Query 011102
Match_columns 493
No_of_seqs 499 out of 2813
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 08:08:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011102.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011102hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.8E-57 3.9E-62 497.8 34.1 364 99-487 418-801 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 8.1E-56 1.8E-60 484.8 36.3 369 97-487 380-766 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.8E-54 3.9E-59 468.9 32.0 363 97-488 97-507 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 4.2E-54 9E-59 476.5 28.8 372 97-487 131-669 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 2E-50 4.2E-55 447.3 30.0 366 95-486 59-500 (857)
6 PLN03081 pentatricopeptide (PP 100.0 2.1E-49 4.6E-54 429.4 29.3 352 96-472 167-560 (697)
7 PRK11788 tetratricopeptide rep 99.8 4.3E-18 9.4E-23 172.5 33.2 289 178-476 46-354 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.8 4.4E-16 9.5E-21 173.8 34.2 295 175-483 575-879 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.8 7.5E-16 1.6E-20 172.0 36.0 295 176-483 508-812 (899)
10 PRK11788 tetratricopeptide rep 99.8 9.1E-16 2E-20 155.5 33.2 267 205-484 44-324 (389)
11 KOG4422 Uncharacterized conser 99.6 1.8E-12 3.9E-17 123.9 29.2 288 180-470 192-552 (625)
12 KOG4422 Uncharacterized conser 99.6 2.9E-12 6.2E-17 122.5 26.3 216 262-483 206-441 (625)
13 PF13041 PPR_2: PPR repeat fam 99.5 3.4E-14 7.5E-19 98.5 6.4 49 368-416 1-49 (50)
14 PRK15174 Vi polysaccharide exp 99.5 4.9E-10 1.1E-14 120.6 37.4 282 176-469 85-381 (656)
15 PF13041 PPR_2: PPR repeat fam 99.5 1.7E-13 3.6E-18 95.1 6.9 50 333-382 1-50 (50)
16 PRK15174 Vi polysaccharide exp 99.5 8.3E-10 1.8E-14 118.8 37.9 243 178-432 121-379 (656)
17 PF13429 TPR_15: Tetratricopep 99.3 6.8E-11 1.5E-15 114.2 13.1 254 203-467 15-275 (280)
18 KOG4626 O-linked N-acetylgluco 99.2 7.9E-10 1.7E-14 110.5 19.9 346 96-475 125-489 (966)
19 PRK10747 putative protoheme IX 99.2 5.6E-08 1.2E-12 98.6 33.9 272 180-467 97-388 (398)
20 PRK11447 cellulose synthase su 99.2 1.8E-08 3.8E-13 115.8 32.9 346 96-469 278-700 (1157)
21 TIGR02521 type_IV_pilW type IV 99.2 3.1E-08 6.7E-13 91.7 28.2 200 263-468 31-231 (234)
22 TIGR00990 3a0801s09 mitochondr 99.2 3.7E-08 8E-13 106.0 32.6 252 210-469 308-571 (615)
23 TIGR00990 3a0801s09 mitochondr 99.2 1.1E-07 2.3E-12 102.4 36.1 282 176-469 136-496 (615)
24 PRK10049 pgaA outer membrane p 99.2 4.3E-08 9.3E-13 107.7 33.1 292 175-476 91-461 (765)
25 KOG4318 Bicoid mRNA stability 99.2 2.8E-09 6E-14 110.6 20.4 245 192-455 21-286 (1088)
26 PRK11447 cellulose synthase su 99.1 1.4E-07 3.1E-12 108.4 35.5 282 177-468 279-665 (1157)
27 TIGR00540 hemY_coli hemY prote 99.1 2E-07 4.4E-12 95.0 32.7 279 179-467 96-397 (409)
28 KOG4626 O-linked N-acetylgluco 99.1 3.3E-08 7.2E-13 99.1 24.1 280 175-468 124-450 (966)
29 PRK10049 pgaA outer membrane p 99.1 6.9E-07 1.5E-11 98.3 36.9 292 175-476 57-427 (765)
30 COG3071 HemY Uncharacterized e 99.1 1.1E-06 2.3E-11 84.5 32.5 283 180-474 97-395 (400)
31 KOG4318 Bicoid mRNA stability 99.0 5.2E-09 1.1E-13 108.6 14.5 306 151-491 16-358 (1088)
32 PRK14574 hmsH outer membrane p 99.0 4.1E-06 8.9E-11 91.4 36.4 291 176-476 111-484 (822)
33 PRK09782 bacteriophage N4 rece 99.0 1E-05 2.2E-10 90.1 39.0 279 179-468 354-671 (987)
34 PF12854 PPR_1: PPR repeat 99.0 8.3E-10 1.8E-14 69.2 4.1 32 365-396 2-33 (34)
35 KOG1126 DNA-binding cell divis 98.9 3.8E-07 8.3E-12 92.7 24.3 280 181-474 333-625 (638)
36 PF12854 PPR_1: PPR repeat 98.9 1.2E-09 2.7E-14 68.4 4.1 32 400-431 2-33 (34)
37 PF13429 TPR_15: Tetratricopep 98.9 1E-08 2.2E-13 99.0 12.0 247 177-432 18-275 (280)
38 PRK09782 bacteriophage N4 rece 98.9 7.5E-06 1.6E-10 91.2 35.8 189 270-468 516-705 (987)
39 PRK10747 putative protoheme IX 98.9 3.8E-06 8.2E-11 85.3 30.7 273 198-484 84-370 (398)
40 TIGR02521 type_IV_pilW type IV 98.9 2.1E-06 4.4E-11 79.4 25.5 199 198-433 33-231 (234)
41 PRK14574 hmsH outer membrane p 98.9 7.6E-06 1.7E-10 89.3 33.0 285 175-468 76-395 (822)
42 TIGR00540 hemY_coli hemY prote 98.8 8.4E-06 1.8E-10 83.1 30.6 274 198-484 84-379 (409)
43 COG2956 Predicted N-acetylgluc 98.8 2.3E-05 5E-10 73.5 30.2 278 181-468 49-346 (389)
44 KOG2003 TPR repeat-containing 98.8 3.6E-06 7.9E-11 81.8 25.0 268 205-486 428-705 (840)
45 COG2956 Predicted N-acetylgluc 98.7 3.9E-05 8.5E-10 72.0 28.6 265 209-484 48-324 (389)
46 KOG1155 Anaphase-promoting com 98.7 1.9E-05 4.1E-10 77.4 27.5 297 181-487 241-552 (559)
47 PRK12370 invasion protein regu 98.7 1.4E-05 2.9E-10 84.9 27.6 257 198-470 258-536 (553)
48 KOG1126 DNA-binding cell divis 98.7 3.9E-06 8.3E-11 85.6 21.4 259 211-488 334-604 (638)
49 KOG1840 Kinesin light chain [C 98.6 9.3E-06 2E-10 83.1 23.6 232 198-432 201-477 (508)
50 KOG1840 Kinesin light chain [C 98.6 2E-05 4.4E-10 80.7 23.5 245 238-483 205-499 (508)
51 PRK12370 invasion protein regu 98.5 3.7E-05 8.1E-10 81.5 25.7 180 276-468 317-501 (553)
52 KOG2076 RNA polymerase III tra 98.5 6.3E-05 1.4E-09 79.3 25.1 347 98-468 150-554 (895)
53 KOG2076 RNA polymerase III tra 98.5 0.00054 1.2E-08 72.5 31.8 181 176-363 149-344 (895)
54 TIGR00756 PPR pentatricopeptid 98.4 3.4E-07 7.4E-12 57.7 3.9 33 372-404 2-34 (35)
55 PF12569 NARP1: NMDA receptor- 98.4 0.00053 1.1E-08 71.1 28.9 282 177-468 14-333 (517)
56 PRK11189 lipoprotein NlpI; Pro 98.4 0.00026 5.7E-09 68.8 25.3 208 265-485 66-281 (296)
57 TIGR00756 PPR pentatricopeptid 98.4 5.8E-07 1.3E-11 56.6 4.1 33 442-474 2-34 (35)
58 PF12569 NARP1: NMDA receptor- 98.3 0.00057 1.2E-08 70.9 27.1 258 203-473 11-295 (517)
59 PF13812 PPR_3: Pentatricopept 98.3 1E-06 2.3E-11 55.1 3.9 32 372-403 3-34 (34)
60 PF13812 PPR_3: Pentatricopept 98.3 1.2E-06 2.6E-11 54.9 4.1 33 441-473 2-34 (34)
61 KOG2002 TPR-containing nuclear 98.3 0.0002 4.4E-09 76.2 22.2 277 198-483 454-759 (1018)
62 cd05804 StaR_like StaR_like; a 98.3 0.0058 1.3E-07 60.9 32.4 258 205-468 52-335 (355)
63 PF04733 Coatomer_E: Coatomer 98.2 0.00015 3.3E-09 69.8 18.7 150 271-433 110-264 (290)
64 COG3071 HemY Uncharacterized e 98.2 0.0038 8.3E-08 60.6 27.4 272 199-484 85-370 (400)
65 KOG1173 Anaphase-promoting com 98.2 0.0018 3.9E-08 65.4 25.8 272 203-487 251-534 (611)
66 PRK11189 lipoprotein NlpI; Pro 98.2 0.0025 5.4E-08 62.0 26.8 223 209-445 39-275 (296)
67 KOG2003 TPR repeat-containing 98.2 0.0011 2.3E-08 65.1 23.0 268 175-455 427-709 (840)
68 PF01535 PPR: PPR repeat; Int 98.1 2.6E-06 5.6E-11 52.0 3.2 29 372-400 2-30 (31)
69 KOG1155 Anaphase-promoting com 98.1 0.0039 8.4E-08 61.6 25.9 150 313-468 344-494 (559)
70 KOG1129 TPR repeat-containing 98.1 0.00031 6.7E-09 66.2 17.3 226 236-468 227-457 (478)
71 KOG1129 TPR repeat-containing 98.0 0.00031 6.8E-09 66.2 16.6 220 203-432 230-456 (478)
72 KOG3617 WD40 and TPR repeat-co 98.0 0.0006 1.3E-08 71.3 20.2 253 175-489 736-1007(1416)
73 PF01535 PPR: PPR repeat; Int 98.0 4.8E-06 1E-10 50.8 3.1 30 442-471 2-31 (31)
74 PF08579 RPM2: Mitochondrial r 98.0 0.00013 2.7E-09 58.2 11.5 70 382-451 37-115 (120)
75 TIGR03302 OM_YfiO outer membra 98.0 0.0012 2.5E-08 61.8 20.5 185 262-469 32-232 (235)
76 PF08579 RPM2: Mitochondrial r 98.0 0.00015 3.3E-09 57.7 11.3 80 339-418 29-117 (120)
77 cd05804 StaR_like StaR_like; a 98.0 0.014 2.9E-07 58.2 28.4 262 201-469 11-293 (355)
78 KOG1915 Cell cycle control pro 98.0 0.024 5.2E-07 56.4 28.3 282 178-469 152-536 (677)
79 PF10037 MRP-S27: Mitochondria 97.9 0.00014 3E-09 72.9 13.2 123 331-453 62-186 (429)
80 PF10037 MRP-S27: Mitochondria 97.9 0.00018 3.9E-09 72.2 13.4 125 293-418 61-186 (429)
81 TIGR03302 OM_YfiO outer membra 97.9 0.0044 9.6E-08 57.9 22.1 180 231-433 32-231 (235)
82 PF04733 Coatomer_E: Coatomer 97.9 0.0012 2.5E-08 63.8 18.2 215 177-399 45-265 (290)
83 KOG1070 rRNA processing protei 97.9 0.0033 7.1E-08 69.7 22.9 218 262-487 1457-1683(1710)
84 PF06239 ECSIT: Evolutionarily 97.9 0.00029 6.3E-09 63.1 12.2 105 332-455 44-153 (228)
85 COG3063 PilF Tfp pilus assembl 97.8 0.008 1.7E-07 54.4 20.8 208 264-480 36-245 (250)
86 KOG2047 mRNA splicing factor [ 97.8 0.052 1.1E-06 56.0 28.5 197 265-466 389-612 (835)
87 PF06239 ECSIT: Evolutionarily 97.7 0.00047 1E-08 61.8 11.5 105 260-385 44-153 (228)
88 KOG0495 HAT repeat protein [RN 97.7 0.083 1.8E-06 54.7 32.3 263 199-468 553-879 (913)
89 COG3063 PilF Tfp pilus assembl 97.7 0.035 7.5E-07 50.3 24.2 164 263-432 69-234 (250)
90 KOG2047 mRNA splicing factor [ 97.7 0.086 1.9E-06 54.5 32.3 309 175-491 110-600 (835)
91 KOG2002 TPR-containing nuclear 97.7 0.061 1.3E-06 58.0 28.5 200 262-469 269-481 (1018)
92 KOG1070 rRNA processing protei 97.7 0.027 5.9E-07 62.8 26.1 199 198-403 1460-1667(1710)
93 KOG0985 Vesicle coat protein c 97.7 0.013 2.8E-07 63.1 22.9 159 234-420 1106-1264(1666)
94 KOG3616 Selective LIM binding 97.6 0.0028 6.1E-08 65.7 17.0 139 265-428 767-905 (1636)
95 KOG0547 Translocase of outer m 97.6 0.0054 1.2E-07 61.1 17.9 191 269-467 366-564 (606)
96 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0029 6.2E-08 63.3 15.7 122 339-467 173-295 (395)
97 PRK15359 type III secretion sy 97.5 0.0068 1.5E-07 52.0 15.9 92 375-468 29-120 (144)
98 KOG1173 Anaphase-promoting com 97.5 0.093 2E-06 53.5 25.3 264 175-450 252-532 (611)
99 KOG1128 Uncharacterized conser 97.5 0.0058 1.3E-07 63.7 17.2 190 264-468 425-615 (777)
100 TIGR02552 LcrH_SycD type III s 97.5 0.0064 1.4E-07 51.2 15.0 103 373-479 20-122 (135)
101 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.0048 1.1E-07 61.7 15.8 127 262-397 168-295 (395)
102 PF04840 Vps16_C: Vps16, C-ter 97.5 0.074 1.6E-06 52.0 23.7 110 336-465 178-287 (319)
103 KOG0985 Vesicle coat protein c 97.5 0.032 6.9E-07 60.3 22.1 186 206-428 1058-1243(1666)
104 PF09976 TPR_21: Tetratricopep 97.4 0.0074 1.6E-07 51.8 15.0 125 337-465 14-143 (145)
105 PRK04841 transcriptional regul 97.4 0.15 3.2E-06 57.8 29.8 264 205-470 461-761 (903)
106 PRK14720 transcript cleavage f 97.4 0.049 1.1E-06 59.9 24.3 217 198-451 33-268 (906)
107 KOG1128 Uncharacterized conser 97.4 0.012 2.6E-07 61.4 18.3 228 201-451 403-634 (777)
108 PRK10370 formate-dependent nit 97.4 0.011 2.3E-07 53.8 16.2 116 313-432 53-171 (198)
109 KOG3616 Selective LIM binding 97.4 0.015 3.3E-07 60.5 18.4 108 343-463 740-847 (1636)
110 PRK15179 Vi polysaccharide bio 97.4 0.07 1.5E-06 57.7 24.6 129 297-432 85-215 (694)
111 COG5010 TadD Flp pilus assembl 97.4 0.031 6.7E-07 51.6 18.6 154 307-466 75-228 (257)
112 KOG3785 Uncharacterized conser 97.4 0.13 2.9E-06 49.4 22.9 54 412-466 400-454 (557)
113 PRK10370 formate-dependent nit 97.3 0.053 1.2E-06 49.2 19.7 130 348-481 52-184 (198)
114 KOG0495 HAT repeat protein [RN 97.3 0.29 6.3E-06 50.9 32.9 278 198-487 518-799 (913)
115 KOG0547 Translocase of outer m 97.3 0.032 6.9E-07 55.8 18.8 227 209-451 339-578 (606)
116 COG4783 Putative Zn-dependent 97.3 0.029 6.2E-07 56.2 18.4 159 300-483 309-470 (484)
117 PF09976 TPR_21: Tetratricopep 97.3 0.013 2.8E-07 50.3 14.4 126 301-430 15-143 (145)
118 PRK15359 type III secretion sy 97.2 0.024 5.2E-07 48.6 15.8 89 342-432 31-119 (144)
119 TIGR02552 LcrH_SycD type III s 97.2 0.021 4.5E-07 48.0 15.3 97 336-434 18-114 (135)
120 PRK04841 transcriptional regul 97.2 0.5 1.1E-05 53.6 30.9 264 204-468 417-719 (903)
121 KOG3785 Uncharacterized conser 97.2 0.042 9.2E-07 52.7 18.0 193 269-469 291-490 (557)
122 PRK14720 transcript cleavage f 97.2 0.037 7.9E-07 60.8 19.6 196 264-469 32-252 (906)
123 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.02 4.3E-07 46.7 13.8 97 373-469 5-105 (119)
124 KOG1914 mRNA cleavage and poly 97.1 0.081 1.7E-06 53.7 19.7 150 314-468 346-500 (656)
125 KOG1174 Anaphase-promoting com 97.1 0.35 7.5E-06 47.7 28.4 85 401-488 433-518 (564)
126 cd00189 TPR Tetratricopeptide 97.1 0.013 2.8E-07 44.6 11.5 92 374-467 4-95 (100)
127 KOG4340 Uncharacterized conser 97.0 0.17 3.7E-06 47.7 19.6 251 204-466 86-372 (459)
128 KOG4340 Uncharacterized conser 97.0 0.045 9.8E-07 51.4 15.7 194 265-472 12-210 (459)
129 KOG2053 Mitochondrial inherita 97.0 0.5 1.1E-05 50.9 25.0 101 208-317 21-128 (932)
130 PF05843 Suf: Suppressor of fo 97.0 0.015 3.2E-07 56.0 13.2 144 264-415 2-150 (280)
131 KOG3081 Vesicle coat complex C 97.0 0.18 4E-06 46.7 19.1 151 270-433 115-270 (299)
132 COG5010 TadD Flp pilus assembl 97.0 0.1 2.3E-06 48.2 17.6 154 272-431 75-228 (257)
133 PRK15179 Vi polysaccharide bio 97.0 0.076 1.7E-06 57.5 19.6 180 260-453 83-268 (694)
134 cd00189 TPR Tetratricopeptide 96.9 0.019 4.2E-07 43.6 11.4 94 338-433 3-96 (100)
135 PF05843 Suf: Suppressor of fo 96.9 0.036 7.9E-07 53.3 15.2 129 336-468 2-135 (280)
136 PLN02789 farnesyltranstransfer 96.9 0.5 1.1E-05 46.3 24.3 47 316-364 125-171 (320)
137 KOG2376 Signal recognition par 96.8 0.75 1.6E-05 47.4 27.8 308 168-483 13-427 (652)
138 PF12921 ATP13: Mitochondrial 96.8 0.019 4.1E-07 47.8 10.8 54 400-453 47-101 (126)
139 TIGR02795 tol_pal_ybgF tol-pal 96.8 0.064 1.4E-06 43.6 14.2 98 337-434 4-105 (119)
140 PLN02789 farnesyltranstransfer 96.8 0.6 1.3E-05 45.8 25.9 204 204-417 45-267 (320)
141 COG4783 Putative Zn-dependent 96.8 0.061 1.3E-06 53.9 15.5 128 337-469 309-437 (484)
142 PF12921 ATP13: Mitochondrial 96.7 0.019 4.1E-07 47.8 10.3 80 263-343 2-96 (126)
143 KOG3941 Intermediate in Toll s 96.7 0.014 3.1E-07 54.2 9.8 88 333-420 65-173 (406)
144 KOG1125 TPR repeat-containing 96.7 0.32 7E-06 49.8 20.0 246 206-462 295-564 (579)
145 PF12895 Apc3: Anaphase-promot 96.6 0.0054 1.2E-07 47.1 5.8 80 384-465 3-83 (84)
146 CHL00033 ycf3 photosystem I as 96.5 0.069 1.5E-06 47.0 13.3 63 336-398 36-100 (168)
147 KOG3941 Intermediate in Toll s 96.5 0.038 8.1E-07 51.5 11.2 104 365-468 62-187 (406)
148 KOG2376 Signal recognition par 96.5 1.3 2.8E-05 45.7 27.8 130 351-483 357-500 (652)
149 PF12895 Apc3: Anaphase-promot 96.5 0.0071 1.5E-07 46.4 5.7 79 349-430 3-83 (84)
150 PLN03088 SGT1, suppressor of 96.5 0.071 1.5E-06 53.2 14.2 101 343-447 10-110 (356)
151 KOG1156 N-terminal acetyltrans 96.5 1.4 3.1E-05 45.9 29.9 264 198-471 145-470 (700)
152 KOG3081 Vesicle coat complex C 96.4 0.81 1.8E-05 42.6 25.0 173 283-468 93-270 (299)
153 PRK02603 photosystem I assembl 96.3 0.3 6.5E-06 43.1 16.2 84 337-422 37-123 (172)
154 PRK02603 photosystem I assembl 96.2 0.24 5.1E-06 43.8 14.7 129 264-420 36-166 (172)
155 KOG2280 Vacuolar assembly/sort 96.2 0.75 1.6E-05 48.7 19.7 126 318-462 667-792 (829)
156 PF04840 Vps16_C: Vps16, C-ter 96.1 1.2 2.6E-05 43.6 20.4 86 370-465 177-262 (319)
157 KOG3060 Uncharacterized conser 96.1 1.2 2.5E-05 41.3 23.5 185 276-468 25-219 (289)
158 PF14559 TPR_19: Tetratricopep 96.1 0.026 5.6E-07 41.1 6.8 62 417-481 3-64 (68)
159 KOG3617 WD40 and TPR repeat-co 96.1 0.79 1.7E-05 49.0 19.4 212 207-462 811-1057(1416)
160 KOG1915 Cell cycle control pro 96.0 2 4.4E-05 43.3 31.9 81 171-254 111-196 (677)
161 CHL00033 ycf3 photosystem I as 96.0 0.19 4.1E-06 44.2 13.0 113 353-466 17-139 (168)
162 PF14938 SNAP: Soluble NSF att 96.0 1.1 2.4E-05 43.0 19.3 26 265-290 37-62 (282)
163 KOG2053 Mitochondrial inherita 96.0 3.2 6.9E-05 45.1 25.6 216 180-400 22-256 (932)
164 KOG1125 TPR repeat-containing 95.9 0.83 1.8E-05 47.0 18.4 240 177-426 295-563 (579)
165 PRK10153 DNA-binding transcrip 95.9 0.53 1.1E-05 49.4 17.7 63 404-468 419-481 (517)
166 PF14559 TPR_19: Tetratricopep 95.8 0.05 1.1E-06 39.6 7.1 49 348-397 4-52 (68)
167 PLN03088 SGT1, suppressor of 95.8 0.25 5.5E-06 49.3 14.3 101 306-412 10-110 (356)
168 KOG1156 N-terminal acetyltrans 95.8 3.1 6.7E-05 43.6 29.5 193 179-380 53-262 (700)
169 KOG1174 Anaphase-promoting com 95.7 2.5 5.4E-05 41.9 28.4 134 343-482 342-478 (564)
170 PF03704 BTAD: Bacterial trans 95.7 0.091 2E-06 45.0 9.3 72 407-479 64-140 (146)
171 PF13170 DUF4003: Protein of u 95.6 1.8 3.9E-05 41.9 18.9 127 315-444 78-221 (297)
172 KOG1914 mRNA cleavage and poly 95.6 0.9 1.9E-05 46.4 17.0 129 265-397 368-499 (656)
173 PF12688 TPR_5: Tetratrico pep 95.6 0.67 1.5E-05 38.2 13.7 86 344-431 10-101 (120)
174 PF12688 TPR_5: Tetratrico pep 95.4 0.79 1.7E-05 37.8 13.5 55 272-327 10-66 (120)
175 PF03704 BTAD: Bacterial trans 95.1 0.15 3.3E-06 43.6 9.0 68 374-442 66-138 (146)
176 KOG3060 Uncharacterized conser 95.1 2.8 6.1E-05 38.9 18.8 156 313-477 26-189 (289)
177 KOG1538 Uncharacterized conser 95.1 2.6 5.7E-05 44.0 18.5 51 198-252 600-652 (1081)
178 KOG2796 Uncharacterized conser 95.0 3 6.5E-05 38.9 17.5 145 302-451 181-330 (366)
179 smart00299 CLH Clathrin heavy 95.0 1.4 3.1E-05 37.2 14.7 84 340-431 12-95 (140)
180 PRK10866 outer membrane biogen 95.0 3.1 6.7E-05 39.0 18.6 175 270-467 39-239 (243)
181 PF09205 DUF1955: Domain of un 94.9 1.3 2.8E-05 36.8 12.8 139 275-437 14-152 (161)
182 PRK10153 DNA-binding transcrip 94.8 2.7 5.8E-05 44.1 18.8 146 292-444 331-490 (517)
183 PF13432 TPR_16: Tetratricopep 94.8 0.16 3.5E-06 36.5 7.1 55 413-468 5-59 (65)
184 PF13432 TPR_16: Tetratricopep 94.7 0.15 3.3E-06 36.6 6.7 53 344-397 6-58 (65)
185 KOG2041 WD40 repeat protein [G 94.6 5 0.00011 42.5 19.2 260 203-481 743-1063(1189)
186 PRK10803 tol-pal system protei 94.6 0.66 1.4E-05 44.1 12.5 96 336-433 144-245 (263)
187 COG5107 RNA14 Pre-mRNA 3'-end 94.4 3.3 7.1E-05 41.6 16.6 146 264-417 398-547 (660)
188 smart00299 CLH Clathrin heavy 94.3 2.8 6.1E-05 35.3 15.3 124 303-451 12-136 (140)
189 PF13170 DUF4003: Protein of u 94.2 4.5 9.7E-05 39.2 17.4 138 212-376 78-223 (297)
190 PF09205 DUF1955: Domain of un 94.2 2.2 4.8E-05 35.5 12.7 67 405-472 86-152 (161)
191 COG5107 RNA14 Pre-mRNA 3'-end 94.1 1.5 3.4E-05 43.8 13.8 127 335-468 397-530 (660)
192 PRK15363 pathogenicity island 94.0 1.6 3.4E-05 37.7 12.2 88 342-432 42-130 (157)
193 PRK15363 pathogenicity island 93.9 1.1 2.4E-05 38.6 11.1 85 380-467 45-130 (157)
194 PF13424 TPR_12: Tetratricopep 93.8 0.27 5.9E-06 36.7 6.8 60 407-466 7-72 (78)
195 PRK10803 tol-pal system protei 93.7 1.3 2.8E-05 42.1 12.5 98 370-469 143-246 (263)
196 PF13414 TPR_11: TPR repeat; P 93.7 0.44 9.5E-06 34.5 7.6 61 406-467 4-65 (69)
197 KOG2796 Uncharacterized conser 93.7 1.5 3.2E-05 40.9 12.0 143 265-412 179-326 (366)
198 PRK10866 outer membrane biogen 93.4 7 0.00015 36.7 20.1 177 205-432 41-239 (243)
199 PF04053 Coatomer_WDAD: Coatom 93.3 2.7 5.8E-05 43.2 14.9 156 274-465 272-427 (443)
200 PF14938 SNAP: Soluble NSF att 93.3 7.9 0.00017 37.2 23.5 33 182-223 30-62 (282)
201 PF13371 TPR_9: Tetratricopept 93.3 0.72 1.6E-05 33.8 8.2 55 413-468 3-57 (73)
202 PF10300 DUF3808: Protein of u 93.2 5.6 0.00012 41.3 17.2 162 302-467 192-374 (468)
203 KOG4162 Predicted calmodulin-b 93.2 14 0.00031 39.7 28.2 286 177-468 333-782 (799)
204 KOG1127 TPR repeat-containing 93.2 4 8.7E-05 44.9 16.0 160 265-432 494-657 (1238)
205 PF10300 DUF3808: Protein of u 93.2 6.5 0.00014 40.8 17.6 163 266-432 191-374 (468)
206 PF13414 TPR_11: TPR repeat; P 93.1 0.57 1.2E-05 33.9 7.3 58 337-395 5-63 (69)
207 PF13424 TPR_12: Tetratricopep 92.9 0.33 7.2E-06 36.3 5.8 61 371-431 6-72 (78)
208 KOG4162 Predicted calmodulin-b 92.3 19 0.0004 38.8 25.2 201 262-467 322-540 (799)
209 PLN03098 LPA1 LOW PSII ACCUMUL 92.2 2.7 5.9E-05 42.5 12.6 64 334-399 74-141 (453)
210 PF04053 Coatomer_WDAD: Coatom 92.1 4.1 8.9E-05 41.8 14.3 149 179-360 273-427 (443)
211 KOG1920 IkappaB kinase complex 91.9 7.9 0.00017 43.6 16.6 134 267-430 912-1051(1265)
212 KOG1127 TPR repeat-containing 91.8 6 0.00013 43.7 15.2 156 305-468 466-624 (1238)
213 COG4700 Uncharacterized protei 91.7 9.2 0.0002 34.0 16.1 127 331-461 85-214 (251)
214 PLN03098 LPA1 LOW PSII ACCUMUL 91.6 2.9 6.3E-05 42.3 12.1 65 296-364 73-141 (453)
215 KOG0553 TPR repeat-containing 91.6 2.6 5.6E-05 40.1 11.0 96 345-445 91-187 (304)
216 KOG1538 Uncharacterized conser 91.5 3.4 7.4E-05 43.3 12.5 74 313-398 761-845 (1081)
217 KOG2280 Vacuolar assembly/sort 91.3 16 0.00035 39.2 17.4 92 365-466 679-770 (829)
218 PF13371 TPR_9: Tetratricopept 91.3 1.7 3.6E-05 31.8 8.0 53 379-432 4-56 (73)
219 COG4235 Cytochrome c biogenesi 91.2 3.6 7.7E-05 39.2 11.6 99 369-468 155-255 (287)
220 PF13525 YfiO: Outer membrane 91.0 10 0.00022 34.3 14.5 172 272-460 14-198 (203)
221 KOG2297 Predicted translation 91.0 8.8 0.00019 36.6 13.8 147 185-355 185-341 (412)
222 COG3629 DnrI DNA-binding trans 90.7 3.1 6.8E-05 39.6 10.9 79 370-449 153-236 (280)
223 KOG0548 Molecular co-chaperone 90.1 25 0.00054 36.2 25.2 372 92-485 7-469 (539)
224 KOG2041 WD40 repeat protein [G 90.0 30 0.00065 37.0 20.3 267 180-467 747-1084(1189)
225 KOG2114 Vacuolar assembly/sort 90.0 6.5 0.00014 42.5 13.4 175 267-466 338-516 (933)
226 PF07035 Mic1: Colon cancer-as 89.8 13 0.00028 32.5 15.1 33 285-318 16-48 (167)
227 PF13281 DUF4071: Domain of un 89.7 23 0.00051 35.3 19.4 31 439-469 304-334 (374)
228 PF07079 DUF1347: Protein of u 89.6 9.7 0.00021 38.4 13.4 139 274-417 17-179 (549)
229 KOG0553 TPR repeat-containing 89.6 4.8 0.0001 38.3 11.0 99 309-414 92-191 (304)
230 KOG0624 dsRNA-activated protei 89.6 22 0.00047 34.8 24.3 282 175-469 46-370 (504)
231 PF08631 SPO22: Meiosis protei 89.3 21 0.00045 34.2 25.9 231 207-466 4-272 (278)
232 KOG4570 Uncharacterized conser 89.2 3.6 7.8E-05 39.4 9.7 47 350-396 115-161 (418)
233 PF13762 MNE1: Mitochondrial s 89.1 10 0.00022 32.2 11.6 80 373-452 42-127 (145)
234 PF10602 RPN7: 26S proteasome 89.1 5.8 0.00013 35.2 10.8 60 337-396 38-99 (177)
235 COG3898 Uncharacterized membra 88.6 27 0.00059 34.7 23.1 242 208-469 132-392 (531)
236 PF13762 MNE1: Mitochondrial s 88.4 6.3 0.00014 33.5 9.9 95 394-488 26-128 (145)
237 PF07079 DUF1347: Protein of u 88.2 11 0.00024 38.1 12.7 115 264-383 47-180 (549)
238 COG4235 Cytochrome c biogenesi 87.9 26 0.00056 33.5 16.0 157 204-378 110-268 (287)
239 PF13929 mRNA_stabil: mRNA sta 87.6 13 0.00029 35.4 12.5 118 278-395 143-263 (292)
240 KOG4570 Uncharacterized conser 87.6 8.6 0.00019 36.9 11.1 48 385-432 115-162 (418)
241 KOG1920 IkappaB kinase complex 87.2 60 0.0013 37.0 18.7 115 332-466 932-1052(1265)
242 COG3629 DnrI DNA-binding trans 87.2 7.3 0.00016 37.1 10.6 79 335-414 153-236 (280)
243 PF07035 Mic1: Colon cancer-as 87.0 20 0.00044 31.3 15.4 133 320-469 15-149 (167)
244 COG0457 NrfG FOG: TPR repeat [ 86.6 21 0.00046 31.2 25.3 199 266-468 62-264 (291)
245 PF10602 RPN7: 26S proteasome 86.2 11 0.00023 33.5 10.7 97 371-467 37-140 (177)
246 COG1729 Uncharacterized protei 86.2 12 0.00027 35.1 11.4 97 336-433 143-243 (262)
247 PF13929 mRNA_stabil: mRNA sta 85.8 31 0.00067 32.9 13.9 144 338-484 134-287 (292)
248 PF02284 COX5A: Cytochrome c o 85.8 7.2 0.00016 30.8 8.0 59 388-448 28-87 (108)
249 COG4700 Uncharacterized protei 85.2 27 0.00058 31.1 16.1 99 296-398 87-188 (251)
250 PF02259 FAT: FAT domain; Int 84.9 41 0.0009 33.0 16.0 67 403-469 144-213 (352)
251 COG1729 Uncharacterized protei 84.8 14 0.0003 34.8 11.0 98 371-469 143-244 (262)
252 COG4649 Uncharacterized protei 84.7 27 0.00059 30.7 14.3 131 346-476 69-203 (221)
253 KOG2114 Vacuolar assembly/sort 84.6 20 0.00043 39.0 13.2 79 273-360 378-456 (933)
254 PF13525 YfiO: Outer membrane 84.6 31 0.00066 31.2 18.5 152 308-469 15-170 (203)
255 KOG2610 Uncharacterized conser 84.5 42 0.00091 32.7 16.3 202 275-481 115-332 (491)
256 cd00923 Cyt_c_Oxidase_Va Cytoc 84.5 8.9 0.00019 30.0 7.9 62 385-448 22-84 (103)
257 COG3118 Thioredoxin domain-con 84.2 40 0.00087 32.3 17.0 142 308-456 144-288 (304)
258 PF13176 TPR_7: Tetratricopept 84.0 2.7 5.8E-05 26.1 4.3 26 442-467 1-26 (36)
259 PF13512 TPR_18: Tetratricopep 83.9 16 0.00034 31.0 10.0 81 336-417 12-94 (142)
260 PF04184 ST7: ST7 protein; In 83.7 16 0.00034 37.5 11.5 100 375-478 264-365 (539)
261 PRK15331 chaperone protein Sic 83.1 13 0.00028 32.4 9.3 87 345-433 47-133 (165)
262 PF13176 TPR_7: Tetratricopept 82.3 3.2 7E-05 25.7 4.1 26 265-290 1-26 (36)
263 KOG0548 Molecular co-chaperone 82.2 66 0.0014 33.3 20.0 112 271-396 306-418 (539)
264 PF13512 TPR_18: Tetratricopep 82.2 30 0.00065 29.3 11.0 85 299-385 12-97 (142)
265 PF02284 COX5A: Cytochrome c o 81.9 19 0.00042 28.5 8.9 76 407-483 10-87 (108)
266 KOG4555 TPR repeat-containing 81.4 30 0.00066 28.9 10.6 91 344-436 52-146 (175)
267 KOG2297 Predicted translation 80.5 57 0.0012 31.4 13.2 141 253-425 186-341 (412)
268 KOG1585 Protein required for f 80.5 50 0.0011 30.8 15.3 166 279-463 74-250 (308)
269 KOG0276 Vesicle coat complex C 79.7 12 0.00026 39.1 9.2 153 176-361 595-747 (794)
270 cd00923 Cyt_c_Oxidase_Va Cytoc 79.0 18 0.0004 28.3 7.9 64 420-484 22-85 (103)
271 COG0457 NrfG FOG: TPR repeat [ 78.8 44 0.00095 29.1 23.2 192 276-469 36-231 (291)
272 PHA02875 ankyrin repeat protei 78.3 72 0.0016 32.3 14.9 11 181-191 13-23 (413)
273 PRK09687 putative lyase; Provi 78.1 66 0.0014 30.8 30.5 234 231-487 36-279 (280)
274 PRK15331 chaperone protein Sic 78.1 22 0.00047 31.0 9.1 86 309-398 48-133 (165)
275 PF13374 TPR_10: Tetratricopep 77.5 6.4 0.00014 24.7 4.6 27 441-467 3-29 (42)
276 PF00637 Clathrin: Region in C 77.5 0.62 1.3E-05 39.6 -0.5 53 342-394 14-66 (143)
277 KOG1550 Extracellular protein 77.5 1E+02 0.0023 32.8 17.7 184 279-471 228-428 (552)
278 PF04184 ST7: ST7 protein; In 77.4 80 0.0017 32.7 14.0 76 340-415 264-341 (539)
279 PF11838 ERAP1_C: ERAP1-like C 75.7 81 0.0017 30.6 20.1 155 305-465 136-304 (324)
280 PF13428 TPR_14: Tetratricopep 75.3 13 0.00029 24.0 5.7 27 442-468 3-29 (44)
281 PF13428 TPR_14: Tetratricopep 74.9 6.9 0.00015 25.4 4.2 29 265-293 3-31 (44)
282 COG3118 Thioredoxin domain-con 74.9 77 0.0017 30.4 12.5 135 344-483 143-280 (304)
283 PF13374 TPR_10: Tetratricopep 74.8 7.1 0.00015 24.5 4.3 25 372-396 4-28 (42)
284 KOG1550 Extracellular protein 74.7 81 0.0018 33.6 14.4 151 315-470 228-394 (552)
285 KOG0687 26S proteasome regulat 74.0 91 0.002 30.4 13.5 37 374-410 108-148 (393)
286 PRK11906 transcriptional regul 73.3 1.1E+02 0.0025 31.3 14.4 58 369-430 337-397 (458)
287 KOG0276 Vesicle coat complex C 73.3 40 0.00087 35.5 10.9 149 276-466 599-747 (794)
288 PF00637 Clathrin: Region in C 72.9 0.85 1.8E-05 38.7 -0.8 107 375-488 12-138 (143)
289 KOG0624 dsRNA-activated protei 71.7 1.1E+02 0.0023 30.2 22.9 195 270-476 45-257 (504)
290 PF11848 DUF3368: Domain of un 71.2 16 0.00035 24.5 5.3 34 451-484 13-46 (48)
291 KOG2610 Uncharacterized conser 70.5 1.1E+02 0.0024 29.9 15.5 140 262-405 136-283 (491)
292 COG4455 ImpE Protein of avirul 70.4 23 0.00051 32.3 7.6 76 372-449 3-81 (273)
293 KOG0991 Replication factor C, 70.3 93 0.002 28.9 11.7 136 303-450 135-282 (333)
294 KOG0543 FKBP-type peptidyl-pro 70.2 1.1E+02 0.0024 30.7 12.8 21 306-327 216-236 (397)
295 PF09613 HrpB1_HrpK: Bacterial 69.5 75 0.0016 27.6 11.6 50 346-399 21-73 (160)
296 TIGR02508 type_III_yscG type I 69.1 49 0.0011 26.2 8.1 51 379-435 48-98 (115)
297 KOG1585 Protein required for f 68.6 1E+02 0.0023 28.8 12.9 146 265-428 93-250 (308)
298 PF11207 DUF2989: Protein of u 67.0 53 0.0011 29.7 9.1 72 387-459 123-197 (203)
299 KOG0543 FKBP-type peptidyl-pro 66.8 1.2E+02 0.0027 30.3 12.4 138 269-432 214-353 (397)
300 PF08631 SPO22: Meiosis protei 66.7 1.2E+02 0.0026 28.9 24.7 160 265-430 86-271 (278)
301 COG4649 Uncharacterized protei 66.7 93 0.002 27.5 13.8 132 265-399 61-196 (221)
302 PHA02875 ankyrin repeat protei 65.1 50 0.0011 33.5 10.2 79 203-286 6-88 (413)
303 KOG4555 TPR repeat-containing 64.9 84 0.0018 26.4 11.8 91 272-365 52-145 (175)
304 PF11207 DUF2989: Protein of u 64.3 68 0.0015 29.0 9.3 72 316-389 123-197 (203)
305 PF13934 ELYS: Nuclear pore co 63.6 1.2E+02 0.0026 28.0 11.3 44 180-223 91-135 (226)
306 COG2178 Predicted RNA-binding 63.6 75 0.0016 28.5 9.2 89 344-433 38-149 (204)
307 TIGR02508 type_III_yscG type I 62.9 61 0.0013 25.7 7.6 87 314-409 20-106 (115)
308 PF00515 TPR_1: Tetratricopept 62.7 24 0.00052 21.0 4.6 28 441-468 2-29 (34)
309 TIGR02561 HrpB1_HrpK type III 61.9 80 0.0017 27.1 8.8 48 276-328 23-73 (153)
310 COG3947 Response regulator con 61.0 1.6E+02 0.0035 28.3 15.6 71 408-479 282-357 (361)
311 PF11848 DUF3368: Domain of un 60.8 33 0.00072 22.9 5.3 31 417-447 14-44 (48)
312 PF07163 Pex26: Pex26 protein; 60.4 1E+02 0.0022 29.4 10.0 88 339-428 87-181 (309)
313 KOG1130 Predicted G-alpha GTPa 59.8 60 0.0013 32.6 8.8 131 301-432 198-342 (639)
314 PF13281 DUF4071: Domain of un 59.0 2E+02 0.0044 28.8 18.5 162 269-434 147-334 (374)
315 cd08819 CARD_MDA5_2 Caspase ac 58.7 82 0.0018 24.2 7.6 66 389-460 21-86 (88)
316 TIGR03504 FimV_Cterm FimV C-te 57.3 29 0.00062 22.9 4.3 23 446-468 5-27 (44)
317 COG5108 RPO41 Mitochondrial DN 57.1 53 0.0012 35.0 8.3 90 375-467 33-130 (1117)
318 COG4455 ImpE Protein of avirul 57.1 64 0.0014 29.6 7.8 78 337-415 3-82 (273)
319 PF11838 ERAP1_C: ERAP1-like C 56.9 1.9E+02 0.0041 27.9 22.1 118 340-464 134-261 (324)
320 PRK11906 transcriptional regul 56.8 2.4E+02 0.0052 29.0 15.5 148 278-430 273-432 (458)
321 TIGR02561 HrpB1_HrpK type III 56.3 1.3E+02 0.0028 25.8 10.3 63 313-383 24-89 (153)
322 PF00515 TPR_1: Tetratricopept 56.3 31 0.00067 20.5 4.3 26 372-397 3-28 (34)
323 PRK10564 maltose regulon perip 55.9 31 0.00067 33.1 6.0 44 400-443 251-295 (303)
324 PF07163 Pex26: Pex26 protein; 55.2 1.2E+02 0.0027 28.8 9.6 89 268-358 88-181 (309)
325 KOG4077 Cytochrome c oxidase, 55.2 77 0.0017 26.3 7.3 60 386-447 65-125 (149)
326 PF07719 TPR_2: Tetratricopept 55.0 39 0.00084 19.8 4.6 27 442-468 3-29 (34)
327 PF07721 TPR_4: Tetratricopept 54.9 23 0.00049 20.0 3.2 20 445-464 6-25 (26)
328 PF10475 DUF2450: Protein of u 54.8 1.2E+02 0.0027 29.1 10.3 143 334-486 126-276 (291)
329 PF09613 HrpB1_HrpK: Bacterial 54.8 1.4E+02 0.0031 25.8 12.2 17 346-362 55-71 (160)
330 PF02259 FAT: FAT domain; Int 54.6 2.1E+02 0.0046 27.8 20.0 65 334-398 145-212 (352)
331 KOG0687 26S proteasome regulat 53.6 2.3E+02 0.0049 27.8 16.1 135 293-432 65-208 (393)
332 PF11663 Toxin_YhaV: Toxin wit 53.6 12 0.00027 31.2 2.6 33 346-380 106-138 (140)
333 TIGR03504 FimV_Cterm FimV C-te 53.5 25 0.00054 23.1 3.6 25 269-293 5-29 (44)
334 PF10366 Vps39_1: Vacuolar sor 53.2 61 0.0013 26.1 6.6 26 373-398 42-67 (108)
335 PF10579 Rapsyn_N: Rapsyn N-te 53.0 47 0.001 25.0 5.3 46 417-462 18-65 (80)
336 PF13181 TPR_8: Tetratricopept 52.6 44 0.00095 19.7 4.5 27 442-468 3-29 (34)
337 PF11846 DUF3366: Domain of un 52.4 71 0.0015 28.5 7.8 31 402-432 141-171 (193)
338 KOG0991 Replication factor C, 52.2 2E+02 0.0044 26.8 11.0 38 367-405 236-273 (333)
339 KOG1130 Predicted G-alpha GTPa 52.2 78 0.0017 31.8 8.2 96 371-466 196-301 (639)
340 COG3947 Response regulator con 51.6 2.3E+02 0.005 27.3 17.7 101 293-396 222-339 (361)
341 PF11846 DUF3366: Domain of un 51.6 78 0.0017 28.2 7.9 52 417-468 120-172 (193)
342 PRK10564 maltose regulon perip 51.5 27 0.00059 33.5 4.9 43 331-373 252-295 (303)
343 PF13431 TPR_17: Tetratricopep 50.6 18 0.00039 22.1 2.5 22 439-460 12-33 (34)
344 PRK15180 Vi polysaccharide bio 50.6 1.3E+02 0.0028 31.0 9.5 84 347-432 335-418 (831)
345 PF11663 Toxin_YhaV: Toxin wit 49.5 13 0.00029 30.9 2.2 33 381-415 106-138 (140)
346 KOG2063 Vacuolar assembly/sort 49.1 4.2E+02 0.0092 29.9 14.0 115 266-382 507-638 (877)
347 PRK09857 putative transposase; 48.2 1.4E+02 0.0031 28.8 9.4 67 408-475 209-275 (292)
348 PF10366 Vps39_1: Vacuolar sor 47.3 1.1E+02 0.0023 24.6 7.2 26 408-433 42-67 (108)
349 PF10579 Rapsyn_N: Rapsyn N-te 47.2 59 0.0013 24.5 5.1 46 382-427 18-65 (80)
350 KOG4077 Cytochrome c oxidase, 47.1 1.2E+02 0.0026 25.2 7.2 59 281-342 67-125 (149)
351 PF14689 SPOB_a: Sensor_kinase 46.2 58 0.0013 23.1 4.9 22 410-431 28-49 (62)
352 KOG2066 Vacuolar assembly/sort 45.9 4.5E+02 0.0097 29.0 21.5 97 174-275 363-467 (846)
353 PF02847 MA3: MA3 domain; Int 45.3 1E+02 0.0022 24.5 7.0 23 340-362 7-29 (113)
354 KOG4648 Uncharacterized conser 44.8 84 0.0018 30.8 7.0 49 343-393 105-154 (536)
355 KOG2659 LisH motif-containing 44.6 2.4E+02 0.0053 26.0 9.7 99 330-430 21-128 (228)
356 PF14689 SPOB_a: Sensor_kinase 44.5 36 0.00078 24.2 3.6 47 420-468 5-51 (62)
357 COG5187 RPN7 26S proteasome re 44.4 3E+02 0.0065 26.5 14.4 109 322-432 102-219 (412)
358 COG4105 ComL DNA uptake lipopr 44.3 2.8E+02 0.006 26.1 21.4 56 412-468 174-232 (254)
359 PF13934 ELYS: Nuclear pore co 44.3 2.6E+02 0.0057 25.8 10.5 21 376-396 114-134 (226)
360 PF13174 TPR_6: Tetratricopept 43.6 47 0.001 19.2 3.6 23 446-468 6-28 (33)
361 TIGR02397 dnaX_nterm DNA polym 43.5 3.3E+02 0.0071 26.7 15.8 28 375-403 249-276 (355)
362 COG5210 GTPase-activating prot 43.0 2.4E+02 0.0052 29.5 11.0 123 354-483 361-487 (496)
363 PRK14956 DNA polymerase III su 42.7 3.7E+02 0.008 28.1 11.8 37 369-405 247-283 (484)
364 PF10345 Cohesin_load: Cohesin 42.6 4.7E+02 0.01 28.2 18.2 153 338-491 62-239 (608)
365 PF04762 IKI3: IKI3 family; I 41.9 2.8E+02 0.0061 31.7 11.9 129 267-399 698-843 (928)
366 KOG2908 26S proteasome regulat 41.7 1.7E+02 0.0037 28.7 8.5 75 373-447 78-163 (380)
367 PF02847 MA3: MA3 domain; Int 41.1 1.2E+02 0.0025 24.2 6.7 63 373-437 5-69 (113)
368 PRK08691 DNA polymerase III su 40.6 4.6E+02 0.0099 28.8 12.5 83 352-437 181-277 (709)
369 PRK08691 DNA polymerase III su 40.5 3.2E+02 0.007 30.0 11.4 98 280-404 181-279 (709)
370 KOG2659 LisH motif-containing 40.2 3E+02 0.0066 25.4 9.8 98 294-395 22-128 (228)
371 cd00280 TRFH Telomeric Repeat 39.6 2E+02 0.0043 25.7 8.0 14 351-364 85-98 (200)
372 KOG4567 GTPase-activating prot 39.5 1.6E+02 0.0035 28.5 7.9 43 356-398 264-306 (370)
373 COG3898 Uncharacterized membra 39.3 4.2E+02 0.0091 26.8 28.0 286 185-485 71-372 (531)
374 PRK14958 DNA polymerase III su 38.6 4.8E+02 0.01 27.5 12.3 37 288-327 190-226 (509)
375 PRK14958 DNA polymerase III su 38.5 5E+02 0.011 27.4 12.9 78 360-440 190-280 (509)
376 PF09454 Vps23_core: Vps23 cor 38.2 66 0.0014 23.2 4.1 51 403-454 6-56 (65)
377 PF09477 Type_III_YscG: Bacter 37.9 1.8E+02 0.004 23.4 6.7 77 351-434 22-98 (116)
378 KOG2908 26S proteasome regulat 37.8 3.5E+02 0.0077 26.6 10.0 29 452-483 245-273 (380)
379 COG4105 ComL DNA uptake lipopr 37.6 3.5E+02 0.0077 25.4 18.2 70 177-247 44-121 (254)
380 KOG1941 Acetylcholine receptor 37.3 4.4E+02 0.0095 26.4 13.8 47 313-359 136-186 (518)
381 PF11768 DUF3312: Protein of u 37.2 3.9E+02 0.0085 28.1 10.9 61 338-398 411-472 (545)
382 PRK14956 DNA polymerase III su 36.5 5.2E+02 0.011 27.0 13.2 102 316-441 183-284 (484)
383 PF07575 Nucleopor_Nup85: Nup8 35.7 2E+02 0.0043 30.7 9.2 32 417-448 507-538 (566)
384 PF10345 Cohesin_load: Cohesin 35.6 5.9E+02 0.013 27.4 20.2 185 281-467 39-252 (608)
385 KOG0403 Neoplastic transformat 35.5 1.5E+02 0.0033 30.2 7.3 107 374-486 513-627 (645)
386 PLN03025 replication factor C 35.4 4.3E+02 0.0092 25.7 14.9 31 374-405 229-259 (319)
387 cd00280 TRFH Telomeric Repeat 34.6 2.6E+02 0.0057 24.9 7.9 47 315-362 85-138 (200)
388 COG2178 Predicted RNA-binding 34.4 3.5E+02 0.0075 24.4 9.2 107 352-468 20-149 (204)
389 PRK14951 DNA polymerase III su 34.4 4.7E+02 0.01 28.3 11.5 95 380-477 180-287 (618)
390 PHA03100 ankyrin repeat protei 34.4 1.5E+02 0.0033 30.6 7.9 12 463-474 266-277 (480)
391 PF09477 Type_III_YscG: Bacter 34.2 2.5E+02 0.0054 22.7 8.4 78 314-399 21-98 (116)
392 PF03745 DUF309: Domain of unk 33.4 1.5E+02 0.0032 21.1 5.3 15 383-397 12-26 (62)
393 cd08819 CARD_MDA5_2 Caspase ac 33.4 2.3E+02 0.0049 21.9 7.3 67 282-356 21-87 (88)
394 COG0735 Fur Fe2+/Zn2+ uptake r 33.1 2.2E+02 0.0048 24.1 7.4 44 359-403 10-53 (145)
395 PRK07003 DNA polymerase III su 33.1 6.7E+02 0.014 28.0 12.3 84 351-437 180-277 (830)
396 KOG4567 GTPase-activating prot 32.9 2.2E+02 0.0049 27.6 7.7 71 390-465 263-343 (370)
397 PRK07764 DNA polymerase III su 32.9 5.2E+02 0.011 29.1 11.9 29 374-403 252-280 (824)
398 smart00028 TPR Tetratricopepti 32.7 85 0.0018 16.9 3.6 27 442-468 3-29 (34)
399 COG5187 RPN7 26S proteasome re 32.7 4.6E+02 0.01 25.3 12.9 133 331-467 77-219 (412)
400 PRK14971 DNA polymerase III su 32.5 6.8E+02 0.015 27.1 13.9 36 368-404 246-281 (614)
401 COG5108 RPO41 Mitochondrial DN 32.2 2.4E+02 0.0051 30.5 8.4 127 340-476 33-171 (1117)
402 PRK09687 putative lyase; Provi 32.0 4.6E+02 0.01 25.0 26.4 58 368-432 204-261 (280)
403 KOG3807 Predicted membrane pro 31.7 2.2E+02 0.0048 27.8 7.6 49 382-430 287-336 (556)
404 PHA02989 ankyrin repeat protei 31.5 2.4E+02 0.0052 29.4 8.9 16 355-370 88-103 (494)
405 COG5159 RPN6 26S proteasome re 31.3 4.9E+02 0.011 25.1 11.0 128 269-398 9-153 (421)
406 PRK14963 DNA polymerase III su 30.7 5.6E+02 0.012 27.0 11.2 45 280-327 178-223 (504)
407 PF14853 Fis1_TPR_C: Fis1 C-te 30.7 1.6E+02 0.0035 20.2 4.9 36 446-483 7-42 (53)
408 PF10475 DUF2450: Protein of u 29.5 5.1E+02 0.011 24.8 10.6 114 268-394 103-221 (291)
409 PRK12356 glutaminase; Reviewed 29.4 5.5E+02 0.012 25.1 10.4 69 227-303 93-163 (319)
410 smart00638 LPD_N Lipoprotein N 29.3 7.2E+02 0.016 26.5 20.1 199 279-484 291-504 (574)
411 PF04097 Nic96: Nup93/Nic96; 29.3 4.1E+02 0.0089 28.7 10.3 169 270-468 265-455 (613)
412 PRK06645 DNA polymerase III su 29.3 7E+02 0.015 26.3 11.6 86 351-439 189-291 (507)
413 PRK14963 DNA polymerase III su 29.3 6.9E+02 0.015 26.3 12.1 84 352-438 178-274 (504)
414 PRK07764 DNA polymerase III su 29.2 7.1E+02 0.015 28.1 12.2 99 316-438 182-280 (824)
415 COG2909 MalT ATP-dependent tra 29.0 8.7E+02 0.019 27.3 22.6 196 275-470 427-648 (894)
416 PF09454 Vps23_core: Vps23 cor 28.6 89 0.0019 22.5 3.5 49 333-382 6-54 (65)
417 PF12796 Ank_2: Ankyrin repeat 28.5 91 0.002 23.3 3.9 81 345-439 4-86 (89)
418 PF09868 DUF2095: Uncharacteri 28.5 2E+02 0.0044 23.3 5.6 26 340-365 66-91 (128)
419 COG4003 Uncharacterized protei 27.6 1E+02 0.0023 23.2 3.7 26 445-470 36-61 (98)
420 PRK07003 DNA polymerase III su 27.5 9.1E+02 0.02 27.0 15.7 36 368-404 244-279 (830)
421 KOG1464 COP9 signalosome, subu 27.4 5.5E+02 0.012 24.5 16.4 130 267-397 69-218 (440)
422 PRK09857 putative transposase; 27.4 4.1E+02 0.009 25.6 9.0 25 415-439 250-274 (292)
423 PRK11639 zinc uptake transcrip 27.1 3.2E+02 0.007 23.8 7.5 64 359-423 15-78 (169)
424 KOG1498 26S proteasome regulat 26.9 6.7E+02 0.015 25.3 15.3 213 203-449 20-257 (439)
425 KOG0403 Neoplastic transformat 26.7 7.2E+02 0.016 25.6 14.9 63 408-471 512-574 (645)
426 PHA01351 putative minor struct 26.6 8.7E+02 0.019 26.5 23.3 87 201-287 450-537 (1070)
427 PRK14962 DNA polymerase III su 26.4 7.5E+02 0.016 25.7 16.4 33 374-407 248-280 (472)
428 PRK11639 zinc uptake transcrip 26.1 3.2E+02 0.007 23.8 7.3 61 325-387 17-77 (169)
429 PF11817 Foie-gras_1: Foie gra 26.0 3.5E+02 0.0075 25.2 8.1 53 414-466 187-244 (247)
430 cd07229 Pat_TGL3_like Triacylg 25.9 2.4E+02 0.0052 28.5 7.2 126 356-486 100-248 (391)
431 COG4003 Uncharacterized protei 25.4 1.2E+02 0.0026 22.9 3.6 26 340-365 36-61 (98)
432 KOG2066 Vacuolar assembly/sort 24.6 9.9E+02 0.021 26.5 13.5 75 269-351 362-439 (846)
433 PF08311 Mad3_BUB1_I: Mad3/BUB 24.5 4E+02 0.0087 21.9 8.7 59 405-465 65-124 (126)
434 PRK13342 recombination factor 24.1 7.6E+02 0.017 25.0 14.2 121 350-472 152-302 (413)
435 PRK14970 DNA polymerase III su 23.9 7.1E+02 0.015 24.6 11.6 91 352-446 170-274 (367)
436 cd07153 Fur_like Ferric uptake 23.9 1.8E+02 0.0038 23.3 5.0 35 386-420 16-50 (116)
437 PF09670 Cas_Cas02710: CRISPR- 23.4 7.7E+02 0.017 24.8 12.5 15 313-327 145-159 (379)
438 smart00544 MA3 Domain in DAP-5 23.1 3.8E+02 0.0082 21.2 9.0 23 340-362 7-29 (113)
439 PHA02798 ankyrin-like protein; 22.8 4.6E+02 0.0099 27.2 9.1 82 355-439 89-175 (489)
440 PRK15180 Vi polysaccharide bio 22.7 7.5E+02 0.016 25.7 9.7 116 276-397 302-418 (831)
441 COG1466 HolA DNA polymerase II 22.6 6.3E+02 0.014 24.7 9.5 26 451-476 219-244 (334)
442 PRK11619 lytic murein transgly 22.3 1E+03 0.022 25.9 25.5 262 174-467 106-373 (644)
443 COG0735 Fur Fe2+/Zn2+ uptake r 22.3 4.3E+02 0.0093 22.4 7.2 40 330-370 16-55 (145)
444 cd07153 Fur_like Ferric uptake 22.3 1.8E+02 0.004 23.2 4.8 48 340-387 5-52 (116)
445 COG1747 Uncharacterized N-term 22.1 9.4E+02 0.02 25.4 21.9 178 262-449 65-248 (711)
446 PRK06645 DNA polymerase III su 22.1 9.4E+02 0.02 25.3 11.3 46 279-327 189-235 (507)
447 PLN03025 replication factor C 21.7 7.4E+02 0.016 24.0 15.7 46 403-450 223-268 (319)
448 PRK12357 glutaminase; Reviewed 21.7 7.7E+02 0.017 24.2 12.5 70 227-304 97-169 (326)
449 KOG1114 Tripeptidyl peptidase 21.6 1.1E+03 0.023 27.0 11.2 183 162-373 1104-1301(1304)
450 TIGR03184 DNA_S_dndE DNA sulfu 21.6 2E+02 0.0044 23.0 4.6 18 316-333 5-22 (105)
451 PRK07452 DNA polymerase III su 21.5 7.4E+02 0.016 23.9 10.1 79 357-439 139-233 (326)
452 KOG4648 Uncharacterized conser 21.5 5E+02 0.011 25.7 7.9 47 271-320 105-152 (536)
453 KOG2063 Vacuolar assembly/sort 21.0 1.2E+03 0.027 26.3 12.3 183 301-484 507-741 (877)
454 PF08870 DUF1832: Domain of un 21.0 3.8E+02 0.0081 21.7 6.2 87 213-311 6-95 (113)
455 COG2812 DnaX DNA polymerase II 21.0 8.4E+02 0.018 25.7 10.2 48 316-365 181-228 (515)
456 PF08870 DUF1832: Domain of un 21.0 2.1E+02 0.0045 23.2 4.7 35 384-419 62-96 (113)
457 PF12862 Apc5: Anaphase-promot 20.9 3.9E+02 0.0084 20.4 7.4 22 447-468 48-69 (94)
458 KOG1524 WD40 repeat-containing 20.6 4.7E+02 0.01 27.5 7.9 55 300-362 575-629 (737)
459 COG2976 Uncharacterized protei 20.5 6.4E+02 0.014 22.8 13.5 129 232-368 54-192 (207)
460 PF01475 FUR: Ferric uptake re 20.4 1.8E+02 0.0039 23.5 4.4 43 340-382 12-54 (120)
461 smart00544 MA3 Domain in DAP-5 20.3 4.4E+02 0.0095 20.8 10.7 24 302-326 6-29 (113)
462 PF09868 DUF2095: Uncharacteri 20.2 1.5E+02 0.0032 24.0 3.5 26 268-293 66-91 (128)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-57 Score=497.79 Aligned_cols=364 Identities=11% Similarity=0.152 Sum_probs=336.5
Q ss_pred cchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhHHHhhh------hhhhhhhhhccCCchhHHHHHH
Q 011102 99 ESEELEAISSLFQGRIPQKPGRLYRERPLPLPLPHRLRPLELPTPKKRVCLA------SSRASICKQVYKNPSFLISLAR 172 (493)
Q Consensus 99 ~~~~~~~a~~lf~~m~~g~~p~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~a------~~~~~~~~~~~~~~~~l~~l~~ 172 (493)
..|.+++|..+|..| +.||.++|+.++ .+|+..+.++.| |...|..|+...+..++
T Consensus 418 ~~g~~~eAl~lf~~M---~~pd~~Tyn~LL----------~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI----- 479 (1060)
T PLN03218 418 KQRAVKEAFRFAKLI---RNPTLSTFNMLM----------SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLI----- 479 (1060)
T ss_pred HCCCHHHHHHHHHHc---CCCCHHHHHHHH----------HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH-----
Confidence 356777888888887 348999999999 999988888777 66777777766555444
Q ss_pred HHhhccCCCCHHHHHHHHhhhcccC------cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC
Q 011102 173 DIKGLDSHKDVAEVLDKCGRFLRKG------SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHH 246 (493)
Q Consensus 173 ~l~~~~~~~~~~~a~~~~~~m~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g 246 (493)
..|++.|++++|.++|++|...+ +||++|.+|++.|++++|+++|++|.+. |+.||..||+++|.+|++.|
T Consensus 480 --~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 480 --STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSG 556 (1060)
T ss_pred --HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCC
Confidence 55667899999999999998654 9999999999999999999999999987 99999999999999999999
Q ss_pred CCchhhhHHHhhc--------cCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHH
Q 011102 247 ELKVPFKLENFVS--------LASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLV 318 (493)
Q Consensus 247 ~~~~~~~l~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a 318 (493)
+++.+..+ |.+ .+|..+|++||.+|++.|++++|.++|++|.+.|+.|+..+||++|.+|++. |++++|
T Consensus 557 ~~deA~~l--f~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~-G~~deA 633 (1060)
T PLN03218 557 AVDRAFDV--LAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK-GDWDFA 633 (1060)
T ss_pred CHHHHHHH--HHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-CCHHHH
Confidence 96665554 433 3578899999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011102 319 MTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398 (493)
Q Consensus 319 ~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~ 398 (493)
.++|++|.+. |+.||..+|+++|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+
T Consensus 634 l~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 634 LSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999998 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHH
Q 011102 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTV 478 (493)
Q Consensus 399 ~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 478 (493)
.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 713 ~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~ty 792 (1060)
T PLN03218 713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMC 792 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhh
Q 011102 479 VELLQIEKE 487 (493)
Q Consensus 479 ~~Ll~~~~~ 487 (493)
++|+.+|+.
T Consensus 793 nsLIglc~~ 801 (1060)
T PLN03218 793 RCITGLCLR 801 (1060)
T ss_pred HHHHHHHHH
Confidence 999998763
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.1e-56 Score=484.80 Aligned_cols=369 Identities=11% Similarity=0.094 Sum_probs=333.2
Q ss_pred cccchhHHHHHhhhcCC-CCCC-CCCCCCCCCCCCCCCCCCCCCCCCChhHHHhhhhh--hhhhhhhccCCchhHHHHHH
Q 011102 97 IWESEELEAISSLFQGR-IPQK-PGRLYRERPLPLPLPHRLRPLELPTPKKRVCLASS--RASICKQVYKNPSFLISLAR 172 (493)
Q Consensus 97 ~~~~~~~~~a~~lf~~m-~~g~-~p~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~l~~l~~ 172 (493)
+++.|++++|.++|++| ..|. +|+..+++.++ .+|+..+.+..|+. +....|+..+++ .
T Consensus 380 l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li----------~~~~~~g~~~eAl~lf~~M~~pd~~Tyn-------~ 442 (1060)
T PLN03218 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFF----------KACKKQRAVKEAFRFAKLIRNPTLSTFN-------M 442 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHH----------HHHHHCCCHHHHHHHHHHcCCCCHHHHH-------H
Confidence 55679999999999999 6553 56666677777 77777777777722 111123433333 3
Q ss_pred HHhhccCCCCHHHHHHHHhhhcccC------cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC
Q 011102 173 DIKGLDSHKDVAEVLDKCGRFLRKG------SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHH 246 (493)
Q Consensus 173 ~l~~~~~~~~~~~a~~~~~~m~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g 246 (493)
.+..+++.+++++|.++|+.|.+.+ +||++|.+|++.|++++|.++|++|.+. |+.||..||+++|.+|++.|
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCc
Confidence 4566778899999999999998765 9999999999999999999999999997 99999999999999999999
Q ss_pred CCchhhhHHHhhcc------CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHhcCCCCHHHH
Q 011102 247 ELKVPFKLENFVSL------ASKGVLEATAKGFVKGGNLKLAWKLLMVAKD--GGRMLDPSIYAKLILELGKNPDKYMLV 318 (493)
Q Consensus 247 ~~~~~~~l~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~pd~~t~~~li~~~~~~~~~~~~a 318 (493)
+++ +++..|..| +|..+||+||.+|++.|++++|.++|++|.+ .|+.||.+||+++|.+|++. |++++|
T Consensus 522 ~~e--eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~-G~ldeA 598 (1060)
T PLN03218 522 QVA--KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA-GQVDRA 598 (1060)
T ss_pred CHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC-CCHHHH
Confidence 955 444556555 6889999999999999999999999999986 68999999999999999999 999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011102 319 MTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398 (493)
Q Consensus 319 ~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~ 398 (493)
.++|++|.+. |+.|+..+||++|.+|++.|++++|.++|++|.+.|+.||.++|++||++|++.|++++|.++|++|.+
T Consensus 599 ~elf~~M~e~-gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 599 KEVYQMIHEY-NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999998 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHH
Q 011102 399 SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTV 478 (493)
Q Consensus 399 ~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 478 (493)
.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhh
Q 011102 479 VELLQIEKE 487 (493)
Q Consensus 479 ~~Ll~~~~~ 487 (493)
++||..|..
T Consensus 758 ~sLL~a~~k 766 (1060)
T PLN03218 758 SILLVASER 766 (1060)
T ss_pred HHHHHHHHH
Confidence 999996543
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-54 Score=468.92 Aligned_cols=363 Identities=12% Similarity=0.065 Sum_probs=324.1
Q ss_pred cccchhHHHHHhhhcCC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCCChhHHHhhh------hhhhhhhhhccCCchhHH
Q 011102 97 IWESEELEAISSLFQGR-IP-QKPGRLYRERPLPLPLPHRLRPLELPTPKKRVCLA------SSRASICKQVYKNPSFLI 168 (493)
Q Consensus 97 ~~~~~~~~~a~~lf~~m-~~-g~~p~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~a------~~~~~~~~~~~~~~~~l~ 168 (493)
+...|++++|..+|+.| .. +..||..+|+.++ .+++..+..+.| |...|+.|+...++.
T Consensus 97 l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll----------~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~--- 163 (697)
T PLN03081 97 LVACGRHREALELFEILEAGCPFTLPASTYDALV----------EACIALKSIRCVKAVYWHVESSGFEPDQYMMNR--- 163 (697)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH----------HHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH---
Confidence 45579999999999999 44 3689999999999 888776665544 666777766554443
Q ss_pred HHHHHHhhccCCCCHHHHHHHHhhhcccC--cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHH-----------
Q 011102 169 SLARDIKGLDSHKDVAEVLDKCGRFLRKG--SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLL----------- 235 (493)
Q Consensus 169 ~l~~~l~~~~~~~~~~~a~~~~~~m~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~----------- 235 (493)
.+..|++.|++++|.++|++|..++ +||++|.+|++.|++++|+++|++|.+. |+.||..||
T Consensus 164 ----Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 164 ----VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred ----HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCC
Confidence 3467788899999999999999877 9999999999999999999999999876 666665554
Q ss_pred ------------------------HHHHHHHHHcCCCchhhhHHHhhcc--CcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011102 236 ------------------------ASTVEVLARHHELKVPFKLENFVSL--ASKGVLEATAKGFVKGGNLKLAWKLLMVA 289 (493)
Q Consensus 236 ------------------------~~li~~~~~~g~~~~~~~l~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m 289 (493)
+++|++|++.|+++.+. ..|..| +|..+||+||.+|++.|++++|+++|++|
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~--~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR--CVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHH--HHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 66677777778754444 446555 47889999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 011102 290 KDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT 369 (493)
Q Consensus 290 ~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 369 (493)
.+.|+.||..||+++|.+|++. |.+++|.+++.+|.+. |+.||..+||+||++|+++|++++|.++|++|. .||
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~-g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRL-ALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhc-cchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999 9999999999999998 999999999999999999999999999999998 789
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHH
Q 011102 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK-EAGFCPTYDIYRDMIR 448 (493)
Q Consensus 370 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~ty~~li~ 448 (493)
+++||+||.+|++.|+.++|+++|++|.+.|+.||.+||+++|.+|++.|++++|.++|+.|. +.|+.|+..+|++||+
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 4799999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHhhhhc
Q 011102 449 IFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKES 488 (493)
Q Consensus 449 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~ 488 (493)
+|++.|++++|.+++++| ++.||..+|++|+..|...
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~ 507 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIH 507 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHc
Confidence 999999999999998876 5899999999999988653
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.2e-54 Score=476.54 Aligned_cols=372 Identities=14% Similarity=0.097 Sum_probs=308.1
Q ss_pred cccchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhHHHhhh------hhhhhhhhhccCCchhHHHH
Q 011102 97 IWESEELEAISSLFQGRIPQKPGRLYRERPLPLPLPHRLRPLELPTPKKRVCLA------SSRASICKQVYKNPSFLISL 170 (493)
Q Consensus 97 ~~~~~~~~~a~~lf~~m~~g~~p~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~a------~~~~~~~~~~~~~~~~l~~l 170 (493)
..+.|+++.|+.+|++| +.||+++||+++ .+|+..|..++| |...|+.|+..+++.++..+
T Consensus 131 ~~~~g~~~~A~~~f~~m---~~~d~~~~n~li----------~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~ 197 (857)
T PLN03077 131 FVRFGELVHAWYVFGKM---PERDLFSWNVLV----------GGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTC 197 (857)
T ss_pred HHhCCChHHHHHHHhcC---CCCCeeEHHHHH----------HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHh
Confidence 35678999999999999 778999999999 999988888777 66778888888887766543
Q ss_pred ----------------------------HHHHhhccCCCCHHHHHHHHhhhcccC--cHHHHHHHHHhCCChHHHHHHHH
Q 011102 171 ----------------------------ARDIKGLDSHKDVAEVLDKCGRFLRKG--SLSFTVRELGHMNLPERALQTFC 220 (493)
Q Consensus 171 ----------------------------~~~l~~~~~~~~~~~a~~~~~~m~~~~--~~~~li~~~~~~g~~~~A~~l~~ 220 (493)
...+..|++.|++++|.++|++|+.++ +||++|.+|++.|++++|+++|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 198 GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred CCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 234688999999999999999998877 99999999999999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhH---------------------------------HHhhcc--CcHHH
Q 011102 221 WAQKQPHLFPDDRLLASTVEVLARHHELKVPFKL---------------------------------ENFVSL--ASKGV 265 (493)
Q Consensus 221 ~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l---------------------------------~~~~~~--~~~~~ 265 (493)
+|.+. |+.||..||+++|.+|++.|+++.++.+ ..|.+| +|..+
T Consensus 278 ~M~~~-g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s 356 (857)
T PLN03077 278 TMREL-SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVS 356 (857)
T ss_pred HHHHc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeee
Confidence 99987 8888888888887777776665544333 223333 36678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 011102 266 LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVG 345 (493)
Q Consensus 266 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~ 345 (493)
||++|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++. |++++|.++++.|.+. |+.|+..+||+||++|
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~-g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL-GDLDVGVKLHELAERK-GLISYVVVANALIEMY 434 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc-chHHHHHHHHHHHHHh-CCCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 8999999999999887 8888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHcC------------------------------C-----------------------------
Q 011102 346 IRLQKFGVVESLFHWFTHSG------------------------------R----------------------------- 366 (493)
Q Consensus 346 ~~~g~~~~A~~l~~~m~~~g------------------------------~----------------------------- 366 (493)
+++|++++|.++|++|.+.+ +
T Consensus 435 ~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 88888888888887775321 1
Q ss_pred ------------------------------------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011102 367 ------------------------------------DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV 410 (493)
Q Consensus 367 ------------------------------------~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~ 410 (493)
.||+++||+||.+|++.|+.++|+++|++|.+.|+.||.+||++
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 45666777778888888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHhhhh
Q 011102 411 VIKLFVALNDISRAIRYFSKLK-EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487 (493)
Q Consensus 411 li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~~~~~ 487 (493)
+|.+|++.|++++|.++|++|. +.|+.|+..+|++|+++|++.|++++|.+++++|. ++||..+|++||..|+.
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~ 669 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRI 669 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH
Confidence 8888888888888888888887 67888888888888888888888888888888874 78888888888887754
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-50 Score=447.26 Aligned_cols=366 Identities=13% Similarity=0.097 Sum_probs=307.5
Q ss_pred CccccchhHHHHHhhhcCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCChhHHHhhh------hhhhhhhhhccCCchhH
Q 011102 95 DFIWESEELEAISSLFQGR-IPQKPGRLYRERPLPLPLPHRLRPLELPTPKKRVCLA------SSRASICKQVYKNPSFL 167 (493)
Q Consensus 95 ~~~~~~~~~~~a~~lf~~m-~~g~~p~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~a------~~~~~~~~~~~~~~~~l 167 (493)
..++..|++++|..+|+.| ..|.+|+..+|..++ .++...+.+..| +...+..++..
T Consensus 59 ~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------ 122 (857)
T PLN03077 59 RALCSHGQLEQALKLLESMQELRVPVDEDAYVALF----------RLCEWKRAVEEGSRVCSRALSSHPSLGVR------ 122 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHH----------HHHhhCCCHHHHHHHHHHHHHcCCCCCch------
Confidence 3577789999999999999 888999999999998 766655554444 22233322221
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHhhhcccC--cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHH----
Q 011102 168 ISLARDIKGLDSHKDVAEVLDKCGRFLRKG--SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEV---- 241 (493)
Q Consensus 168 ~~l~~~l~~~~~~~~~~~a~~~~~~m~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~---- 241 (493)
.....+..|++.|+++.|+++|++|..++ +||++|.+|++.|++++|+++|++|... |+.||.+||+++|++
T Consensus 123 -~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~ 200 (857)
T PLN03077 123 -LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGI 200 (857)
T ss_pred -HHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCc
Confidence 12234577889999999999999998887 9999999999999999999999999987 999988887655555
Q ss_pred -------------------------------HHHcCCCchhhhHHHhhccC--cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011102 242 -------------------------------LARHHELKVPFKLENFVSLA--SKGVLEATAKGFVKGGNLKLAWKLLMV 288 (493)
Q Consensus 242 -------------------------------~~~~g~~~~~~~l~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~ 288 (493)
|++.|+++. +...|.+|+ |..+||+||.+|++.|++++|+++|++
T Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~--A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 201 PDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS--ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred cchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHH--HHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 455555333 334465554 778999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011102 289 AKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP 368 (493)
Q Consensus 289 m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 368 (493)
|.+.|+.||..||+++|.+|++. |+++.|.+++..|.+. |+.||..+||+||++|+++|++++|.++|++|. .|
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~-g~~~~a~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~ 352 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELL-GDERLGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TK 352 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhc-CChHHHHHHHHHHHHh-CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CC
Confidence 99999999999999999999999 9999999999999998 899999999999999999999999999999997 78
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011102 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448 (493)
Q Consensus 369 ~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~ 448 (493)
|.++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++++.|.+.|+.|+..+||+||+
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHH------------------------------CCCccCHHHHHHHHHhhh
Q 011102 449 IFMASGRLAKCRDVCKEAEM------------------------------AGFKLDKQTVVELLQIEK 486 (493)
Q Consensus 449 ~~~~~g~~~~A~~l~~~m~~------------------------------~g~~pd~~t~~~Ll~~~~ 486 (493)
+|++.|++++|.++|++|.+ .++.||..||+++|..|.
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACA 500 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHh
Confidence 88888877777777766643 256788888888887653
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-49 Score=429.37 Aligned_cols=352 Identities=12% Similarity=0.045 Sum_probs=318.9
Q ss_pred ccccchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhHHHhhh------hhhhhhhhhccCCchhHHH
Q 011102 96 FIWESEELEAISSLFQGRIPQKPGRLYRERPLPLPLPHRLRPLELPTPKKRVCLA------SSRASICKQVYKNPSFLIS 169 (493)
Q Consensus 96 ~~~~~~~~~~a~~lf~~m~~g~~p~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~a------~~~~~~~~~~~~~~~~l~~ 169 (493)
...+.|+++.|..+|++| +.||.++||+++ .+|+..|..++| |...|..|+..++..++..
T Consensus 167 ~y~k~g~~~~A~~lf~~m---~~~~~~t~n~li----------~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a 233 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEM---PERNLASWGTII----------GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233 (697)
T ss_pred HHhcCCCHHHHHHHHhcC---CCCCeeeHHHHH----------HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHH
Confidence 355689999999999999 679999999999 999999988887 6677777777666555433
Q ss_pred HH----------------------------HHHhhccCCCCHHHHHHHHhhhcccC--cHHHHHHHHHhCCChHHHHHHH
Q 011102 170 LA----------------------------RDIKGLDSHKDVAEVLDKCGRFLRKG--SLSFTVRELGHMNLPERALQTF 219 (493)
Q Consensus 170 l~----------------------------~~l~~~~~~~~~~~a~~~~~~m~~~~--~~~~li~~~~~~g~~~~A~~l~ 219 (493)
++ ..+..|+++|++++|.++|++|..++ +||++|.+|++.|++++|+++|
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 22 24688999999999999999998887 9999999999999999999999
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhc----cCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011102 220 CWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVS----LASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRM 295 (493)
Q Consensus 220 ~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 295 (493)
++|.+. |+.||..||+++|.+|++.|+++.++.++.... .++..+||+||++|+++|++++|.++|++|.+
T Consensus 314 ~~M~~~-g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---- 388 (697)
T PLN03081 314 YEMRDS-GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---- 388 (697)
T ss_pred HHHHHc-CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----
Confidence 999987 999999999999999999999887777644322 45778999999999999999999999999975
Q ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHH
Q 011102 296 LDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTH-SGRDPTVVMYT 374 (493)
Q Consensus 296 pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~ty~ 374 (493)
||.++||+||.+|++. |+.++|.++|++|.+. |+.||..||+++|++|++.|++++|.++|+.|.+ .|+.|+..+|+
T Consensus 389 ~d~~t~n~lI~~y~~~-G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 389 KNLISWNALIAGYGNH-GRGTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred CCeeeHHHHHHHHHHc-CCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence 8999999999999999 9999999999999998 9999999999999999999999999999999975 69999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHc
Q 011102 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP-TYDIYRDMIRIFMAS 453 (493)
Q Consensus 375 ~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~ 453 (493)
+||++|++.|++++|.+++++| ++.||..+|++||.+|++.|+++.|..+++++.+ +.| +..+|+.|++.|++.
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhC
Confidence 9999999999999999999876 6789999999999999999999999999999864 445 467999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCc
Q 011102 454 GRLAKCRDVCKEAEMAGFK 472 (493)
Q Consensus 454 g~~~~A~~l~~~m~~~g~~ 472 (493)
|++++|.+++++|.+.|+.
T Consensus 542 G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 542 GRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred CCHHHHHHHHHHHHHcCCc
Confidence 9999999999999999975
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=4.3e-18 Score=172.51 Aligned_cols=289 Identities=9% Similarity=0.012 Sum_probs=236.9
Q ss_pred cCCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHcCCCc
Q 011102 178 DSHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPD---DRLLASTVEVLARHHELK 249 (493)
Q Consensus 178 ~~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd---~~t~~~li~~~~~~g~~~ 249 (493)
...++.++|+..|.++...+ .+..+...+.+.|++++|..+++.+... +..++ ..++..+...+.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 45688999999999887654 6778888999999999999999999875 32222 246788899999999855
Q ss_pred hhhhHHHhhcc-----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhcCCCCHHHHHH
Q 011102 250 VPFKLENFVSL-----ASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDP----SIYAKLILELGKNPDKYMLVMT 320 (493)
Q Consensus 250 ~~~~l~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~li~~~~~~~~~~~~a~~ 320 (493)
.+. ..|..+ .+..+++.++..|.+.|++++|.+.++.+.+.+-.++. ..|..+...+.+. |++++|..
T Consensus 125 ~A~--~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~ 201 (389)
T PRK11788 125 RAE--ELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR-GDLDAARA 201 (389)
T ss_pred HHH--HHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC-CCHHHHHH
Confidence 544 334433 35668999999999999999999999999986643322 2345666778888 99999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 011102 321 LLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN 400 (493)
Q Consensus 321 l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g 400 (493)
.|+++.+. ...+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|++.|+.++|.+.++++.+.
T Consensus 202 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 202 LLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 99999765 223466788888999999999999999999987643333567899999999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCccCHH
Q 011102 401 CLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA---SGRLAKCRDVCKEAEMAGFKLDKQ 476 (493)
Q Consensus 401 i~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~ 476 (493)
.|+...+..+...+.+.|++++|..+|+++.+. .|+..+++.++..+.. .|+.+++..++++|.+.++.|+..
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 477777899999999999999999999998865 5999999999998885 569999999999999988887765
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.78 E-value=4.4e-16 Score=173.84 Aligned_cols=295 Identities=10% Similarity=0.005 Sum_probs=217.5
Q ss_pred hhccCCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCc
Q 011102 175 KGLDSHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELK 249 (493)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~ 249 (493)
..+...|+.++|+..+..+.... .|..+...|.+.|++++|++.|+.+.+. . ..+...+..+..++.+.|+++
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~ 652 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL-Q-PDSALALLLLADAYAVMKNYA 652 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-CCChHHHHHHHHHHHHcCCHH
Confidence 44556677777777777665432 6777777777888888888888777653 1 224556777777777777744
Q ss_pred hhhhHHHhhc-----cCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011102 250 VPFKLENFVS-----LASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDE 324 (493)
Q Consensus 250 ~~~~l~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~ 324 (493)
.+. ..+.. ..+..+|..+...+.+.|++++|.++++.+.+.+ ..+...+..+...+.+. |++++|.+.|+.
T Consensus 653 ~A~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~ 728 (899)
T TIGR02917 653 KAI--TSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQ-KDYPAAIQAYRK 728 (899)
T ss_pred HHH--HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHC-CCHHHHHHHHHH
Confidence 333 33322 1245677888888888888888888888887765 34566777777778888 888888888888
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 011102 325 LGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404 (493)
Q Consensus 325 m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd 404 (493)
+... .|+..++..+..++.+.|++++|.+.++.+.+.. +.+...++.+...|.+.|++++|.+.|+++.+.. ..+
T Consensus 729 ~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~ 803 (899)
T TIGR02917 729 ALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDN 803 (899)
T ss_pred HHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCC
Confidence 7664 3555677778888888888888888888877643 4567888888888888899999999888887764 356
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 011102 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483 (493)
Q Consensus 405 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~ 483 (493)
...++.+...+.+.|+ ++|..++++..+... -+..++..+...+...|++++|.++++++.+.+.. |..++..+..
T Consensus 804 ~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 879 (899)
T TIGR02917 804 AVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLAL 879 (899)
T ss_pred HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHH
Confidence 7788888888888888 778888888875432 25566778888889999999999999999987654 7777766665
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.77 E-value=7.5e-16 Score=171.95 Aligned_cols=295 Identities=8% Similarity=-0.036 Sum_probs=207.1
Q ss_pred hccCCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCch
Q 011102 176 GLDSHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKV 250 (493)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~ 250 (493)
.+...|+.++|.+.+.++.... .+..+...+.+.|+.++|..+|+.+... ...+...+..+...+.+.|+++.
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHH
Confidence 3455677788887777665432 5666777777788888888888777653 22345566777777777777443
Q ss_pred hhhHHHhhcc-----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011102 251 PFKLENFVSL-----ASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDEL 325 (493)
Q Consensus 251 ~~~l~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m 325 (493)
+ +..+..+ .+..+|..+...|.+.|++++|...|+++.+.. +.+...+..+...+.+. |++++|...++.+
T Consensus 586 A--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~ 661 (899)
T TIGR02917 586 A--LAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVM-KNYAKAITSLKRA 661 (899)
T ss_pred H--HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 3 3333322 245677888888888888888888888877643 23455677777777777 8888888888877
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 011102 326 GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405 (493)
Q Consensus 326 ~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~ 405 (493)
... ...+..++..+...+.+.|++++|.++++.+.+.+ ..+...+..+...+.+.|++++|.+.|+.+.+.+ |+.
T Consensus 662 ~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 736 (899)
T TIGR02917 662 LEL--KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSS 736 (899)
T ss_pred Hhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCc
Confidence 654 23456777788888888888888888888887654 4466677777788888888888888888877653 444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 011102 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483 (493)
Q Consensus 406 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~ 483 (493)
.++..+..++.+.|++++|.+.++.+.+.. ..+...+..+...|.+.|++++|.++|+++.+.. +.+..++..+..
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~ 812 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAW 812 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 667777788888888888888888877543 3467777778888888888888888888887653 345555555544
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.77 E-value=9.1e-16 Score=155.50 Aligned_cols=267 Identities=13% Similarity=0.150 Sum_probs=218.1
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCCchhhhHHHhhcc---C------cHHHHHHHHHHHH
Q 011102 205 ELGHMNLPERALQTFCWAQKQPHLFP-DDRLLASTVEVLARHHELKVPFKLENFVSL---A------SKGVLEATAKGFV 274 (493)
Q Consensus 205 ~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~li~~~~~~g~~~~~~~l~~~~~~---~------~~~~~~~li~~~~ 274 (493)
.+...|++++|++.|..+.+. .| +..++..+...+.+.|+++.+... +..+ + ...++..+...|.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~--~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV---DPETVELHLALGNLFRRRGEVDRAIRI--HQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCcHHHHHHH--HHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 456789999999999999864 34 455788899999999986544433 3322 1 1246889999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHHcCC
Q 011102 275 KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS----QQDCTAIMKVGIRLQK 350 (493)
Q Consensus 275 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~----~~~~~~li~~~~~~g~ 350 (493)
+.|++++|.++|+++.+.. ..+..+++.+...+.+. |++++|.+.++.+.+. +-.++ ...|..+...+.+.|+
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQE-KDWQKAIDVAERLEKL-GGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHh-chHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999998753 34677899999999999 9999999999999876 32222 2245667788899999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011102 351 FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430 (493)
Q Consensus 351 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~ 430 (493)
+++|...|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.+..+|++.|++++|...+++
T Consensus 196 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998653 3356788889999999999999999999998764333356789999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHh
Q 011102 431 LKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484 (493)
Q Consensus 431 m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~~ 484 (493)
+.+. .|+...+..+...+.+.|++++|.++++++.+. .|+..++..++..
T Consensus 275 ~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~ 324 (389)
T PRK11788 275 ALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDY 324 (389)
T ss_pred HHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHH
Confidence 9875 477777899999999999999999999998875 7999999988763
No 11
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=1.8e-12 Score=123.88 Aligned_cols=288 Identities=12% Similarity=0.074 Sum_probs=206.6
Q ss_pred CCCHHHHHHHHhhhcccC-cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhh
Q 011102 180 HKDVAEVLDKCGRFLRKG-SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV 258 (493)
Q Consensus 180 ~~~~~~a~~~~~~m~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~ 258 (493)
.|++.+ -.|+..++.+ +|+++|.++|+--..+.|.+++++.... ..+.+..+||.+|.+-+-...-+....+....
T Consensus 192 ~G~vAd--L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqk 268 (625)
T KOG4422|consen 192 SGAVAD--LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSYSVGKKLVAEMISQK 268 (625)
T ss_pred cccHHH--HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHhhccHHHHHHHHHhh
Confidence 466655 3455555444 9999999999999999999999999886 78889999999998876554423333333334
Q ss_pred ccCcHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhc-C--CC
Q 011102 259 SLASKGVLEATAKGFVKGGNLKL----AWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQR-D--DL 331 (493)
Q Consensus 259 ~~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~-~--g~ 331 (493)
--||..|||+++...++.|+++. |.+++.+|++.|+.|...+|..+|.-+++.++....|..++.++... . .+
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 45799999999999999998765 57889999999999999999999999999944445555555555432 0 22
Q ss_pred CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 011102 332 NL----SQQDCTAIMKVGIRLQKFGVVESLFHWFTHS----GRDPTV---VMYTTLIHSRLSEKKCREALTVVWNMEASN 400 (493)
Q Consensus 332 ~p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~---~ty~~li~~~~~~g~~~~A~~l~~~M~~~g 400 (493)
+| |...|...|+.|.+..+.+.|.++-.-+... -+.|+. +-|.-+....|+....+.-++.++.|.-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 32 4556778888888888888888876655421 122332 235566677777777777777777777666
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------------------CCC-----------------------
Q 011102 401 CLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG-------------------FCP----------------------- 438 (493)
Q Consensus 401 i~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g-------------------~~p----------------------- 438 (493)
.-|+..+...++++.--.|.++-.-++|.+|+..| ..|
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~ 508 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAY 508 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777776666666665444 112
Q ss_pred ------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 011102 439 ------------TYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470 (493)
Q Consensus 439 ------------~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 470 (493)
.....+.+.-.+.|.|+.++|.++|....+++
T Consensus 509 e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 509 ESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 22235556666788899999999988885544
No 12
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=2.9e-12 Score=122.53 Aligned_cols=216 Identities=14% Similarity=0.183 Sum_probs=157.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 011102 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341 (493)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~l 341 (493)
...+|.+||.|+||-...+.|.+++++-.....+.+..+||.+|.+-+-..| .+++.+|... .+.||..|+|++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-----K~Lv~EMisq-km~Pnl~TfNal 279 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-----KKLVAEMISQ-KMTPNLFTFNAL 279 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-----HHHHHHHHHh-hcCCchHhHHHH
Confidence 4568999999999999999999999999998899999999999987655522 6888999988 899999999999
Q ss_pred HHHHHHcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH-HHHHHHHHHH----CCCCC----CHHHH
Q 011102 342 MKVGIRLQKFGV----VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE-ALTVVWNMEA----SNCLF----DLPAY 408 (493)
Q Consensus 342 i~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~-A~~l~~~M~~----~gi~p----d~~ty 408 (493)
+++..+.|+++. |.+++.+|++-|+.|...+|.-+|.-+++.++..+ |..++.++.. +.++| |..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998765 56888999999999999999999999999988644 5555555443 22333 33445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC---C-CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHH
Q 011102 409 RVVIKLFVALNDISRAIRYFSKLKEA---G-FCPTY---DIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVEL 481 (493)
Q Consensus 409 ~~li~~~~~~g~~~~A~~~~~~m~~~---g-~~p~~---~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~L 481 (493)
...+..|.+..+.+.|.++-.-+... . +.|+. .-|.-+....|.....+.-...++.|.-+-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 66666677777777776665544411 1 11221 12445555555655666666666666555555555555555
Q ss_pred HH
Q 011102 482 LQ 483 (493)
Q Consensus 482 l~ 483 (493)
++
T Consensus 440 lr 441 (625)
T KOG4422|consen 440 LR 441 (625)
T ss_pred HH
Confidence 55
No 13
>PF13041 PPR_2: PPR repeat family
Probab=99.51 E-value=3.4e-14 Score=98.54 Aligned_cols=49 Identities=31% Similarity=0.372 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011102 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416 (493)
Q Consensus 368 p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~ 416 (493)
||+++||+||++|++.|++++|+++|++|++.|+.||..||+++|++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.47 E-value=4.9e-10 Score=120.59 Aligned_cols=282 Identities=10% Similarity=0.003 Sum_probs=210.0
Q ss_pred hccCCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCCc
Q 011102 176 GLDSHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFP-DDRLLASTVEVLARHHELK 249 (493)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~li~~~~~~g~~~ 249 (493)
.....|+.++|...+++..... .|..+-..+.+.|++++|++.|+.+... .| +...+..+..++...|+.+
T Consensus 85 ~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l---~P~~~~a~~~la~~l~~~g~~~ 161 (656)
T PRK15174 85 SPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA---FSGNSQIFALHLRTLVLMDKEL 161 (656)
T ss_pred hHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCChH
Confidence 3445899999999998776543 6777778889999999999999998753 34 4556788888888989866
Q ss_pred hhhhHHH-h-hccC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 011102 250 VPFKLEN-F-VSLA-SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELG 326 (493)
Q Consensus 250 ~~~~l~~-~-~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~ 326 (493)
.+..... . ...+ +...+..+ ..+.+.|++++|..+++.+.+..-.++...+..+...+.+. |++++|...++...
T Consensus 162 eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~-g~~~eA~~~~~~al 239 (656)
T PRK15174 162 QAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV-GKYQEAIQTGESAL 239 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC-CCHHHHHHHHHHHH
Confidence 5444321 1 1122 23334333 34788899999999999887764334455555566778888 99999999999987
Q ss_pred hcCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 011102 327 QRDDLNLSQQDCTAIMKVGIRLQKFGV----VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCL 402 (493)
Q Consensus 327 ~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~ 402 (493)
.. -.-+...+..+-..|.+.|++++ |...|++..+.. +.+...+..+...+.+.|++++|...+++..+..
T Consensus 240 ~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-- 314 (656)
T PRK15174 240 AR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-- 314 (656)
T ss_pred hc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--
Confidence 65 23456777888889999999886 789998887542 3356788999999999999999999999987653
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 403 FD-LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI-YRDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 403 pd-~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-y~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
|+ ...+..+-..+.+.|++++|...|+.+.+.. |+... +..+..++...|+.++|.+.|++..+.
T Consensus 315 P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 315 PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44 4566777888999999999999999888643 55433 334566788999999999999998764
No 15
>PF13041 PPR_2: PPR repeat family
Probab=99.46 E-value=1.7e-13 Score=95.07 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 011102 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS 382 (493)
Q Consensus 333 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~ 382 (493)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||++||++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999985
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.45 E-value=8.3e-10 Score=118.80 Aligned_cols=243 Identities=11% Similarity=-0.044 Sum_probs=109.2
Q ss_pred cCCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhh
Q 011102 178 DSHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPF 252 (493)
Q Consensus 178 ~~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~ 252 (493)
...|+.++|+..+.+..... .+..+...+...|++++|...++.+... .-. +...+..+ ..+.+.|+++.+
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-~P~-~~~a~~~~-~~l~~~g~~~eA- 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE-VPP-RGDMIATC-LSFLNKSRLPED- 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-CCC-CHHHHHHH-HHHHHcCCHHHH-
Confidence 34455555555555443321 4444555555555555555555544432 111 11112111 224444443222
Q ss_pred hHHHhhc------cCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHH----HHHHH
Q 011102 253 KLENFVS------LASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYML----VMTLL 322 (493)
Q Consensus 253 ~l~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~----a~~l~ 322 (493)
+..+.. ..+...+..+...+.+.|++++|...|++..+.. .-+...+..+-..+.+. |++++ |...|
T Consensus 197 -~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~-G~~~eA~~~A~~~~ 273 (656)
T PRK15174 197 -HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQS-GRSREAKLQAAEHW 273 (656)
T ss_pred -HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc-CCchhhHHHHHHHH
Confidence 222221 1112223333445555555555555555555432 12233444444455555 55543 45555
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 011102 323 DELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCL 402 (493)
Q Consensus 323 ~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~ 402 (493)
++.... -.-+...+..+...+.+.|++++|...+++..+.. +-+...+..+...|.+.|++++|.+.++++.+. .
T Consensus 274 ~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~ 348 (656)
T PRK15174 274 RHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--K 348 (656)
T ss_pred HHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 554432 11233455555555555555555555555554331 112334444555555555555555555555443 2
Q ss_pred CCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 403 FDLPA-YRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 403 pd~~t-y~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
|+... +..+..++...|+.++|...|+...
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33222 2223344555555555555555554
No 17
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.25 E-value=6.8e-11 Score=114.23 Aligned_cols=254 Identities=15% Similarity=0.066 Sum_probs=111.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHH-HHHHcCCCchhhhHHHhhccC-----cHHHHHHHHHHHHhc
Q 011102 203 VRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVE-VLARHHELKVPFKLENFVSLA-----SKGVLEATAKGFVKG 276 (493)
Q Consensus 203 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~-~~~~~g~~~~~~~l~~~~~~~-----~~~~~~~li~~~~~~ 276 (493)
-..+.+.|++++|++++...... ...|+...|-.++. ..-..++++.+. ..+..+. +...+..++.. ...
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~a~La~~~~~~~~A~--~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQK-IAPPDDPEYWRLLADLAWSLGDYDEAI--EAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc-ccccccccccccccccccccccccccc--ccccccccccccccccccccccc-ccc
Confidence 34566778888888888544322 21344444433333 333345433333 3333322 33356667776 688
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011102 277 GNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356 (493)
Q Consensus 277 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 356 (493)
+++++|.+++++..+.. +++..+...+..+.+. ++++++.++++..........+...|..+...+.+.|+.++|++
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRL-GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp -----------------------------H-HHHT-T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHH-hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999998776543 6777788888889898 99999999999987654566788889999999999999999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 011102 357 LFHWFTHSGRDP-TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435 (493)
Q Consensus 357 l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g 435 (493)
.|++..+. .| |....+.++..+...|+.+++.+++....+.. ..|...+..+-.+|...|+.++|..+|++.....
T Consensus 168 ~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 168 DYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 99998765 56 47788999999999999999999998877653 4455667888999999999999999999988643
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 436 FCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 436 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
+.|......+.+++...|+.++|.++..+..
T Consensus 245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -TT-HHHHHHHHHHHT----------------
T ss_pred -ccccccccccccccccccccccccccccccc
Confidence 2377778899999999999999999887654
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.24 E-value=7.9e-10 Score=110.49 Aligned_cols=346 Identities=14% Similarity=0.068 Sum_probs=248.5
Q ss_pred ccccchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhHHHhhh----hhhhhhhhhccCCchhHHHHH
Q 011102 96 FIWESEELEAISSLFQGRIPQKPGRLYRERPLPLPLPHRLRPLELPTPKKRVCLA----SSRASICKQVYKNPSFLISLA 171 (493)
Q Consensus 96 ~~~~~~~~~~a~~lf~~m~~g~~p~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~l~~l~ 171 (493)
+.-+.|++++|..++..+..-.+.++..|.-+. .++...+....| ...-...|+.....+.+-.+.
T Consensus 125 ~~kerg~~~~al~~y~~aiel~p~fida~inla----------~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELKPKFIDAYINLA----------AALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcCchhhHHHhhHH----------HHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 455589999999999998444555666776666 555555555544 111122232222222222222
Q ss_pred HHHhhccCCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHc
Q 011102 172 RDIKGLDSHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDR-LLASTVEVLARH 245 (493)
Q Consensus 172 ~~l~~~~~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~li~~~~~~ 245 (493)
...|++.+|...+.+..... .|+.|=..+-..|+.-.|++-|++..+- .|+-- .|-.|=..|...
T Consensus 195 ------ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP~f~dAYiNLGnV~ke~ 265 (966)
T KOG4626|consen 195 ------KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DPNFLDAYINLGNVYKEA 265 (966)
T ss_pred ------HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC---CCcchHHHhhHHHHHHHH
Confidence 23578888888877655543 7888888889999999999999988743 44322 455566666666
Q ss_pred CCCchhhhHHHhhc----cC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcCCCCHHHHH
Q 011102 246 HELKVPFKLENFVS----LA-SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLD-PSIYAKLILELGKNPDKYMLVM 319 (493)
Q Consensus 246 g~~~~~~~l~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~~~~~~~a~ 319 (493)
+.++.+ +..|.. -+ ..++|..|...|-..|.+|.|+..+++..+. .|+ +..|+.|-.++-.. |++.+|.
T Consensus 266 ~~~d~A--vs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~-G~V~ea~ 340 (966)
T KOG4626|consen 266 RIFDRA--VSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDK-GSVTEAV 340 (966)
T ss_pred hcchHH--HHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhc-cchHHHH
Confidence 665443 333322 22 4456777778888999999999999988874 355 56899999999999 9999999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011102 320 TLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT-VVMYTTLIHSRLSEKKCREALTVVWNMEA 398 (493)
Q Consensus 320 ~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M~~ 398 (493)
+.+.....- ..--....+.|-+.|...|++++|..+|..-.+- .|. ...+|.|-..|-+.|++++|+.-+++..+
T Consensus 341 ~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 341 DCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred HHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence 999987764 2223457788899999999999999999876642 444 46688999999999999999999998765
Q ss_pred CCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCH
Q 011102 399 SNCLFDL-PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT-YDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475 (493)
Q Consensus 399 ~gi~pd~-~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 475 (493)
|+|+. ..|+.+=..|-..|+++.|.+.+.+.... .|. ...++.|-..|-.+|++.+|..-+++..+ ++||.
T Consensus 417 --I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 417 --IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred --cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 67775 57888888888999999999998887653 344 35678888899999999999999988775 56664
No 19
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.23 E-value=5.6e-08 Score=98.62 Aligned_cols=272 Identities=10% Similarity=0.025 Sum_probs=205.2
Q ss_pred CCCHHHHHHHHhhhcccC---cHHHHH--HHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHH--HHHHHHHHcCCCchhh
Q 011102 180 HKDVAEVLDKCGRFLRKG---SLSFTV--RELGHMNLPERALQTFCWAQKQPHLFPDDRLLA--STVEVLARHHELKVPF 252 (493)
Q Consensus 180 ~~~~~~a~~~~~~m~~~~---~~~~li--~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~--~li~~~~~~g~~~~~~ 252 (493)
.|++..|.+......+.. ..+.++ .+..+.|+++.|.+.|..+.+. .||...+. .....+...|+.+.+.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 589999998888765542 333333 3447899999999999999754 55654333 3355677778855444
Q ss_pred hHHHhhc-----cCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhcCCCCHHHHHH
Q 011102 253 KLENFVS-----LASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDP-------SIYAKLILELGKNPDKYMLVMT 320 (493)
Q Consensus 253 ~l~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~li~~~~~~~~~~~~a~~ 320 (493)
. .+.. ..+......+...|.+.|++++|.+++..+.+.+..++. .+|..++...... .+.+...+
T Consensus 174 ~--~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~-~~~~~l~~ 250 (398)
T PRK10747 174 H--GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD-QGSEGLKR 250 (398)
T ss_pred H--HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHH
Confidence 3 3332 235678899999999999999999999999998765333 1334444444455 55677777
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 011102 321 LLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN 400 (493)
Q Consensus 321 l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g 400 (493)
+++.+-+. ...+......+...+.+.|+.++|.+++++..+. .||.. -.++.+....++.+++++..+...+.
T Consensus 251 ~w~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~- 323 (398)
T PRK10747 251 WWKNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ- 323 (398)
T ss_pred HHHhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhh-
Confidence 77777543 4457888899999999999999999999998764 45542 23455666779999999999998765
Q ss_pred CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 401 CLFDL-PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 401 i~pd~-~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
.||. ..+.++=..|.+.|++++|.+.|+...+. .|+..+|..+...+.+.|+.++|.+++++-.
T Consensus 324 -~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 324 -HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3544 45778888899999999999999999864 5999999999999999999999999998764
No 20
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.22 E-value=1.8e-08 Score=115.81 Aligned_cols=346 Identities=13% Similarity=0.014 Sum_probs=215.4
Q ss_pred ccccchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhHHHhhh---hhhhh-hhhhccCCc---hhHH
Q 011102 96 FIWESEELEAISSLFQGRIPQKPGRLYRERPLPLPLPHRLRPLELPTPKKRVCLA---SSRAS-ICKQVYKNP---SFLI 168 (493)
Q Consensus 96 ~~~~~~~~~~a~~lf~~m~~g~~p~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~a---~~~~~-~~~~~~~~~---~~l~ 168 (493)
.....|+++.|...|+......+.+...+..+. ..+...++.++| +.+.- ..|+..... .++.
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg----------~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALG----------QAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH----------HHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 345678999999999887222222333343444 444444555555 11111 112111000 0110
Q ss_pred -----HHHHHHhhccCCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC-CHHHHHH
Q 011102 169 -----SLARDIKGLDSHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFP-DDRLLAS 237 (493)
Q Consensus 169 -----~l~~~l~~~~~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~ 237 (493)
.....-..+.+.+++++|+..+.+..... .+..+-..+...|++++|++.|+...+. .| +...+..
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~---~p~~~~a~~~ 424 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM---DPGNTNAVRG 424 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 00111134557899999999999776543 5566777899999999999999999854 23 3445555
Q ss_pred HHHHHHHcCCCchhhhHHHhhccCc--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHH
Q 011102 238 TVEVLARHHELKVPFKLENFVSLAS--------------KGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLD-PSIYA 302 (493)
Q Consensus 238 li~~~~~~g~~~~~~~l~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~ 302 (493)
+...+.. ++ ..+++..+...+. ...+..+...+...|++++|.+.|++..+.. |+ ...+.
T Consensus 425 L~~l~~~-~~--~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~ 499 (1157)
T PRK11447 425 LANLYRQ-QS--PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTY 499 (1157)
T ss_pred HHHHHHh-cC--HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 5555533 33 2333332322211 1134455566777788888888887777643 43 34455
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHH-------------------------------------------
Q 011102 303 KLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCT------------------------------------------- 339 (493)
Q Consensus 303 ~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~------------------------------------------- 339 (493)
.+-..|.+. |++++|...++++.+... -+...+.
T Consensus 500 ~LA~~~~~~-G~~~~A~~~l~~al~~~P--~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 500 RLAQDLRQA-GQRSQADALMRRLAQQKP--NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHH
Confidence 566667777 777777777777654311 1111111
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 011102 340 -AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL 418 (493)
Q Consensus 340 -~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~ 418 (493)
.+...+...|+.++|.++++. .+.+...+..+-..+.+.|+.++|++.|++..+.. .-+...+..+...|...
T Consensus 577 l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 577 LETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQ 650 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 123345555666666666551 24455667778888999999999999999987753 23567888899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 419 NDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 419 g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
|+.++|.+.++...+.. ..+..++..+..++...|++++|.++++.+...
T Consensus 651 g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 651 GDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 99999999999876432 124556677788888999999999999998764
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.20 E-value=3.1e-08 Score=91.74 Aligned_cols=200 Identities=13% Similarity=0.004 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 011102 263 KGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIM 342 (493)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li 342 (493)
...+..+...|...|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.+++..+. ...+...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~--~~~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQL-GELEKAEDSFRRALTL--NPNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh--CCCCHHHHHHHH
Confidence 4567888899999999999999999988754 23456777788888888 9999999999998765 234566788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011102 343 KVGIRLQKFGVVESLFHWFTHSGRD-PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDI 421 (493)
Q Consensus 343 ~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~ 421 (493)
..|...|++++|.+.|++....... .....+..+...+...|+.++|.+.+.+..+..- .+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCH
Confidence 9999999999999999998764322 2445677788899999999999999999876532 2456788888999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 422 SRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 422 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
++|..++++..+. ...+...+..+...+...|+.++|..+++.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999998866 345677778888999999999999999888764
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.20 E-value=3.7e-08 Score=105.95 Aligned_cols=252 Identities=12% Similarity=-0.049 Sum_probs=191.9
Q ss_pred CChHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCCchhhhHHHhhc----cC-cHHHHHHHHHHHHhcCCHHHHH
Q 011102 210 NLPERALQTFCWAQKQPHLFPD-DRLLASTVEVLARHHELKVPFKLENFVS----LA-SKGVLEATAKGFVKGGNLKLAW 283 (493)
Q Consensus 210 g~~~~A~~l~~~m~~~~g~~pd-~~t~~~li~~~~~~g~~~~~~~l~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~ 283 (493)
+++++|++.|+.........|+ ...|..+-..+...|+++. ++..+.. -+ ....|..+...+...|++++|.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~e--A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLE--ALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 6788999999999875223443 3457777777778888544 4443433 22 3457888889999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 284 KLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTH 363 (493)
Q Consensus 284 ~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 363 (493)
..|++..+.. +-+..+|..+-..+... |++++|...|++.... ...+...+..+...+.+.|++++|+..|++..+
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~-g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 461 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIK-GEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK 461 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999988753 23467888888888898 9999999999998765 223566777888899999999999999999875
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-----CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 011102 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF-----DL-PAYRVVIKLFVALNDISRAIRYFSKLKEAGFC 437 (493)
Q Consensus 364 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~p-----d~-~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 437 (493)
. .+-+...|+.+-..+...|++++|.+.|++..+..-.. +. ..++..+..+...|++++|.+++++......
T Consensus 462 ~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p- 539 (615)
T TIGR00990 462 N-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP- 539 (615)
T ss_pred h-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-
Confidence 4 23457889999999999999999999999977642211 11 1122223334457999999999999876542
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 438 PTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 438 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
-+...+..+...+.+.|++++|.+.|++..+.
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34567899999999999999999999998764
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.20 E-value=1.1e-07 Score=102.44 Aligned_cols=282 Identities=9% Similarity=-0.070 Sum_probs=202.3
Q ss_pred hccCCCCHHHHHHHHhhhccc----CcHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCCch
Q 011102 176 GLDSHKDVAEVLDKCGRFLRK----GSLSFTVRELGHMNLPERALQTFCWAQKQPHLFP-DDRLLASTVEVLARHHELKV 250 (493)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~li~~~~~~g~~~~ 250 (493)
.+-+.+++++|+..|.+.... ..|..+-.+|.+.|++++|++.+...... .| +...|..+-.++...|+++.
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l---~p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL---DPDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHH
Confidence 345567777777777754432 25666666777778888888888777643 33 34466666677777776443
Q ss_pred hhhHHHhhc----------------------------------cC-cHHHHHHH--------------------------
Q 011102 251 PFKLENFVS----------------------------------LA-SKGVLEAT-------------------------- 269 (493)
Q Consensus 251 ~~~l~~~~~----------------------------------~~-~~~~~~~l-------------------------- 269 (493)
+. ..+.. .+ +...+..+
T Consensus 213 A~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (615)
T TIGR00990 213 AL--LDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEET 290 (615)
T ss_pred HH--HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccc
Confidence 32 11100 00 00000000
Q ss_pred ----HHHH------HhcCCHHHHHHHHHHHHhCC-CCCC-HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC-HH
Q 011102 270 ----AKGF------VKGGNLKLAWKLLMVAKDGG-RMLD-PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS-QQ 336 (493)
Q Consensus 270 ----i~~~------~~~g~~~~A~~l~~~m~~~g-~~pd-~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~-~~ 336 (493)
+..+ ...+++++|.+.|++..+.+ ..|+ ...|+.+-..+... |++++|+..++..... .|+ ..
T Consensus 291 ~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~-g~~~eA~~~~~kal~l---~P~~~~ 366 (615)
T TIGR00990 291 GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK-GKHLEALADLSKSIEL---DPRVTQ 366 (615)
T ss_pred ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc---CCCcHH
Confidence 0000 12367899999999998865 3343 44677777777888 9999999999998764 344 55
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~ 416 (493)
.|..+...+...|++++|...|++..+.. +-+...|..+...|...|++++|...|++..+..- .+...+..+-..+.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHH
Confidence 78888889999999999999999987652 34578899999999999999999999999876531 24567777888899
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 417 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
+.|++++|...|++..+.. .-+...|+.+-..+...|++++|.+.|++..+.
T Consensus 445 ~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 9999999999999987542 235778899999999999999999999998764
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.19 E-value=4.3e-08 Score=107.75 Aligned_cols=292 Identities=10% Similarity=-0.017 Sum_probs=171.0
Q ss_pred hhccCCCCHHHHHHHHhhhcccC----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCCc
Q 011102 175 KGLDSHKDVAEVLDKCGRFLRKG----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFP-DDRLLASTVEVLARHHELK 249 (493)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~li~~~~~~g~~~ 249 (493)
..+...++.++|+..+++..... .+..+-..+...|+.++|+..++.+.+. .| +...+..+..++...+..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~---~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPR---APQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCChH
Confidence 34566799999999888765432 2666677888999999999999999854 34 3334455555555555432
Q ss_pred hhh--------------------------------------------hHHHhhccC-------cH-HHH----HHHHHHH
Q 011102 250 VPF--------------------------------------------KLENFVSLA-------SK-GVL----EATAKGF 273 (493)
Q Consensus 250 ~~~--------------------------------------------~l~~~~~~~-------~~-~~~----~~li~~~ 273 (493)
.+. ++..+..+. +. ..+ ...+..+
T Consensus 168 ~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 168 PALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 111 111111100 00 000 0112234
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCC--CCHHHHHHHHHHHHHcCC
Q 011102 274 VKGGNLKLAWKLLMVAKDGGRM-LDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN--LSQQDCTAIMKVGIRLQK 350 (493)
Q Consensus 274 ~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~--p~~~~~~~li~~~~~~g~ 350 (493)
...|+.++|...|+.+.+.+-. |+-.- ..+-..|... |++++|+..|+++....... ........+..++.+.|+
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~-~~la~~yl~~-g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQ-RWVASAYLKL-HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHH-HHHHHHHHhc-CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 4557777777777777766521 32211 1134456666 77777777777765431111 112345555566777777
Q ss_pred HHHHHHHHHHHHHcC-----------CCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011102 351 FGVVESLFHWFTHSG-----------RDPT---VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416 (493)
Q Consensus 351 ~~~A~~l~~~m~~~g-----------~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~ 416 (493)
+++|.++++.+.+.. -.|+ ...+..+...+...|+.++|+++++++.... .-+...+..+...+.
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 777777777776431 1122 2244556667777777777777777766542 223456666667777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHH
Q 011102 417 ALNDISRAIRYFSKLKEAGFCPT-YDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476 (493)
Q Consensus 417 ~~g~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 476 (493)
..|+.++|++.+++..+.. || ...+-.+...+.+.|++++|+.+++++.+ ..|+..
T Consensus 405 ~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~ 461 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDP 461 (765)
T ss_pred hcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCH
Confidence 7777777777777766533 43 44555555667777777777777777765 344443
No 25
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.17 E-value=2.8e-09 Score=110.59 Aligned_cols=245 Identities=13% Similarity=0.081 Sum_probs=154.4
Q ss_pred hhcccCcHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHH
Q 011102 192 RFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAK 271 (493)
Q Consensus 192 ~m~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~ 271 (493)
..+.+.+|..+|..||..|+.+.|- +|..|+-+ ....+...|+.++.+-...++.+-++ .+...||+.|..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ 91 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLK 91 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHH
Confidence 3444557888888888888888777 88877765 56667777888887777777755444 455668888888
Q ss_pred HHHhcCCHHHHHHHHHHHHh-------CCCCCCHHHH--------------HHHHHHHhcCCCCHHHHHHHHHHHhhcCC
Q 011102 272 GFVKGGNLKLAWKLLMVAKD-------GGRMLDPSIY--------------AKLILELGKNPDKYMLVMTLLDELGQRDD 330 (493)
Q Consensus 272 ~~~~~g~~~~A~~l~~~m~~-------~g~~pd~~t~--------------~~li~~~~~~~~~~~~a~~l~~~m~~~~g 330 (493)
+|...|++..-..+=+.|.. .|+.--..-+ ...|.-..-. |.|+.+++++..+-....
T Consensus 92 ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~e-glwaqllkll~~~Pvsa~ 170 (1088)
T KOG4318|consen 92 AYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLE-GLWAQLLKLLAKVPVSAW 170 (1088)
T ss_pred HHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHH-HHHHHHHHHHhhCCcccc
Confidence 88888887552222111221 2211111111 1122222223 445555555544432212
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011102 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV 410 (493)
Q Consensus 331 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~ 410 (493)
..|..+ +|.-+... ..-.+++.+..+...-.|+..+|.++++.-.-+|+++.|..++.+|++.|+..+..-|-.
T Consensus 171 ~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp 244 (1088)
T KOG4318|consen 171 NAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP 244 (1088)
T ss_pred cchHHH----HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence 222222 12222222 223334443333221258888888888888888888889999888988888888887888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011102 411 VIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455 (493)
Q Consensus 411 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~ 455 (493)
||-+ .++...+..++..|.+.|+.|+..||...+-.+..+|.
T Consensus 245 Ll~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 245 LLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8777 78888888888888888888888888888877777665
No 26
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.14 E-value=1.4e-07 Score=108.43 Aligned_cols=282 Identities=10% Similarity=-0.033 Sum_probs=186.1
Q ss_pred ccCCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHH------------H
Q 011102 177 LDSHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLAST------------V 239 (493)
Q Consensus 177 ~~~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~l------------i 239 (493)
+...|++++|+..|++..... .+..+-..|.+.|++++|++.|+...+...-.++...|..+ -
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 345789999999998765543 66777789999999999999999988642222222222222 2
Q ss_pred HHHHHcCCCchhhhHHHhhcc-----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH--------
Q 011102 240 EVLARHHELKVPFKLENFVSL-----ASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLD-PSIYAKLI-------- 305 (493)
Q Consensus 240 ~~~~~~g~~~~~~~l~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li-------- 305 (493)
..+.+.|+++ +++..|.+. .+...+..+-..+.+.|++++|++.|++..+.. |+ ...+..+.
T Consensus 359 ~~~~~~g~~~--eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 359 DAALKANNLA--QAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHCCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCH
Confidence 3455667644 444434332 245577788899999999999999999988743 33 22332222
Q ss_pred ----------------------------------HHHhcCCCCHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHcCC
Q 011102 306 ----------------------------------LELGKNPDKYMLVMTLLDELGQRDDLNL-SQQDCTAIMKVGIRLQK 350 (493)
Q Consensus 306 ----------------------------------~~~~~~~~~~~~a~~l~~~m~~~~g~~p-~~~~~~~li~~~~~~g~ 350 (493)
..+... |++++|.+.|++..+. .| +...+..+...|.+.|+
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~-g~~~eA~~~~~~Al~~---~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQ-GKWAQAAELQRQRLAL---DPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHC-CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCC
Confidence 223455 7888888888887664 24 45566778888899999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-------------------------------
Q 011102 351 FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS------------------------------- 399 (493)
Q Consensus 351 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~------------------------------- 399 (493)
+++|...|++..+.. +-+...+..+...+...|+.++|+..++.+...
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999876532 112332322222333444444444444332111
Q ss_pred --------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 400 --------NCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 400 --------gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
....+...+..+-..+.+.|+.++|...|++..+..- .+...+..+...|...|++++|.+.++...+
T Consensus 590 ~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 590 AEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 0123344556677778889999999999998886542 3677888899999999999999999997765
No 27
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.14 E-value=2e-07 Score=94.99 Aligned_cols=279 Identities=11% Similarity=0.010 Sum_probs=192.1
Q ss_pred CCCCHHHHHHHHhhhcccC---cHHHHH--HHHHhCCChHHHHHHHHHHHhCCCCCCCHH--HHHHHHHHHHHcCCCchh
Q 011102 179 SHKDVAEVLDKCGRFLRKG---SLSFTV--RELGHMNLPERALQTFCWAQKQPHLFPDDR--LLASTVEVLARHHELKVP 251 (493)
Q Consensus 179 ~~~~~~~a~~~~~~m~~~~---~~~~li--~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~--t~~~li~~~~~~g~~~~~ 251 (493)
..|++..|.+.+.+..+.. ..+.++ .+..+.|+.+.|.+.|....+. .|+.. ..-.....+...|+++.+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4699999999888665542 334443 4677789999999999998754 24432 333346667778885544
Q ss_pred hhHHHhhc-----cCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---hcCCCCHHHHHHHHH
Q 011102 252 FKLENFVS-----LASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILEL---GKNPDKYMLVMTLLD 323 (493)
Q Consensus 252 ~~l~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~---~~~~~~~~~a~~l~~ 323 (493)
. ..+.. ..+..++..+...|.+.|++++|.+++..+.+.+..++......-..++ ... +..+++.+.+.
T Consensus 173 l--~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~-~~~~~~~~~L~ 249 (409)
T TIGR00540 173 R--HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE-AMADEGIDGLL 249 (409)
T ss_pred H--HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH-HHHhcCHHHHH
Confidence 4 33333 2356688899999999999999999999999987543332211111111 211 12222223333
Q ss_pred HHhhcC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011102 324 ELGQRD--DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVM---YTTLIHSRLSEKKCREALTVVWNMEA 398 (493)
Q Consensus 324 ~m~~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---y~~li~~~~~~g~~~~A~~l~~~M~~ 398 (493)
.+.... ....+...+..+...+...|+.++|.+++++..+. .||... .....-.....++.+++.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 333320 12247888999999999999999999999998865 344432 12222333445788889999988665
Q ss_pred CCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 399 SNCLFDLP---AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 399 ~gi~pd~~---ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
. .|+.. ...++=..|.+.|++++|.+.|+........||...+..+...+.+.|+.++|.+++++-.
T Consensus 328 ~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 328 N--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred h--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 45544 3446667789999999999999965555567999999999999999999999999999753
No 28
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.10 E-value=3.3e-08 Score=99.12 Aligned_cols=280 Identities=13% Similarity=0.022 Sum_probs=170.4
Q ss_pred hhccCCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH-cCCC
Q 011102 175 KGLDSHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLAR-HHEL 248 (493)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~-~g~~ 248 (493)
+.+...|++++|+..++.+.+.. .|..+-.+|...|+.+.|.+.|.+.. .+.|+.+...+-+.-+-+ .|++
T Consensus 124 N~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~al---qlnP~l~ca~s~lgnLlka~Grl 200 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEAL---QLNPDLYCARSDLGNLLKAEGRL 200 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHH---hcCcchhhhhcchhHHHHhhccc
Confidence 45666799999999999877654 78888999999999999999999887 457777665443333333 4554
Q ss_pred chhhhHHHh--hccC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhcC-------------
Q 011102 249 KVPFKLENF--VSLA-SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDP-SIYAKLILELGKN------------- 311 (493)
Q Consensus 249 ~~~~~l~~~--~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~li~~~~~~------------- 311 (493)
+.+.+-..- ..-+ =...|+.|-..+-..|+...|+.-|++..+. .|+- ..|-.|-..|...
T Consensus 201 ~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 201 EEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRA 278 (966)
T ss_pred chhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHH
Confidence 444432111 1111 1234666666666677777777777666553 2331 2333333333333
Q ss_pred --------------------CCCHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-C
Q 011102 312 --------------------PDKYMLVMTLLDELGQRDDLNLS-QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP-T 369 (493)
Q Consensus 312 --------------------~~~~~~a~~l~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~ 369 (493)
.|.++.|+..+++.... .|+ ...|+.|-+++-..|++.+|++.|++-... .| -
T Consensus 279 l~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~---~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~h 353 (966)
T KOG4626|consen 279 LNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL---QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNH 353 (966)
T ss_pred HhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc---CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCcc
Confidence 05555555555554332 233 345666666666667777777777665533 23 2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 011102 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL-PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTY-DIYRDMI 447 (493)
Q Consensus 370 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~-~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ty~~li 447 (493)
..+.|.|-..|...|++++|..+|....+ +.|.. ..+|.|-..|-++|++++|...+++... |.|+. ..|+.+=
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmG 429 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMG 429 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcc
Confidence 34566666677777777777777666544 23432 3566666677777777777777766653 44543 4566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 011102 448 RIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 448 ~~~~~~g~~~~A~~l~~~m~~ 468 (493)
..|-..|+++.|...+.+...
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHh
Confidence 667777777777776666554
No 29
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.10 E-value=6.9e-07 Score=98.31 Aligned_cols=292 Identities=13% Similarity=0.013 Sum_probs=196.5
Q ss_pred hhccCCCCHHHHHHHHhhhccc-----CcHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCc
Q 011102 175 KGLDSHKDVAEVLDKCGRFLRK-----GSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELK 249 (493)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~ 249 (493)
..+...+++.+|...|.+.... ..+..+...+...|+.++|+..++...+. ...+.. +..+..++...|+.
T Consensus 57 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~- 132 (765)
T PRK10049 57 VAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRH- 132 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCH-
Confidence 3456679999999999975433 25667778899999999999999999864 222444 77777788888884
Q ss_pred hhhhHHHhhc----cC-cHHHHHHHHHHHHhcCCHHHHH-----------------------------------------
Q 011102 250 VPFKLENFVS----LA-SKGVLEATAKGFVKGGNLKLAW----------------------------------------- 283 (493)
Q Consensus 250 ~~~~l~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~----------------------------------------- 283 (493)
.+++..+.. -| +...+..+...+.+.|..++|+
T Consensus 133 -~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ 211 (765)
T PRK10049 133 -WDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAI 211 (765)
T ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHH
Confidence 444443432 22 3344445555555555555444
Q ss_pred -----HHHHHHHhC-CCCCCHH-HHH----HHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHH
Q 011102 284 -----KLLMVAKDG-GRMLDPS-IYA----KLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFG 352 (493)
Q Consensus 284 -----~l~~~m~~~-g~~pd~~-t~~----~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 352 (493)
+.++.+.+. ...|+.. .+. ..+..+... |++++|...|+.+.+.+.-.|+... -.+...|...|+++
T Consensus 212 ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~-g~~~eA~~~~~~ll~~~~~~P~~a~-~~la~~yl~~g~~e 289 (765)
T PRK10049 212 ADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR-DRYKDVISEYQRLKAEGQIIPPWAQ-RWVASAYLKLHQPE 289 (765)
T ss_pred HHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh-hhHHHHHHHHHHhhccCCCCCHHHH-HHHHHHHHhcCCcH
Confidence 444444432 1122221 111 113345666 8899999999998876222243221 22466889999999
Q ss_pred HHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHH
Q 011102 353 VVESLFHWFTHSGRDP---TVVMYTTLIHSRLSEKKCREALTVVWNMEASN-----------CLFDL---PAYRVVIKLF 415 (493)
Q Consensus 353 ~A~~l~~~m~~~g~~p---~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g-----------i~pd~---~ty~~li~~~ 415 (493)
+|+.+|+++.+..-.. ....+..|..++...|++++|.++++.+.+.. -.|+. ..+..+...+
T Consensus 290 ~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l 369 (765)
T PRK10049 290 KAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVA 369 (765)
T ss_pred HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHH
Confidence 9999999886542111 13456677778899999999999999987642 11332 3455667788
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHH
Q 011102 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476 (493)
Q Consensus 416 ~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 476 (493)
...|++++|.++++++.... +-+...+..+...+...|++++|++.+++..+ +.||..
T Consensus 370 ~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~ 427 (765)
T PRK10049 370 KYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNI 427 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCh
Confidence 89999999999999987543 34577788889999999999999999998876 457653
No 30
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.09 E-value=1.1e-06 Score=84.54 Aligned_cols=283 Identities=11% Similarity=0.086 Sum_probs=218.5
Q ss_pred CCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhh-h
Q 011102 180 HKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPF-K 253 (493)
Q Consensus 180 ~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~-~ 253 (493)
.|++..|.+...+-.+.+ .|-.-..+--+.|+.+.|-+.+.+.-+. .-.++...+-+........|+...+. .
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-AGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 689999988887644433 4444556778889999999999998765 33455566777777788888765443 2
Q ss_pred HHHhhcc--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHhcCCCCHHHHHHHHHH
Q 011102 254 LENFVSL--ASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPS-------IYAKLILELGKNPDKYMLVMTLLDE 324 (493)
Q Consensus 254 l~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------t~~~li~~~~~~~~~~~~a~~l~~~ 324 (493)
+....+| ....+.......|.+.|++.....++..|.+.|+--|+. +|+.++.-.... +..+.-...|+.
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~-~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD-NGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHh
Confidence 3334443 366788999999999999999999999999999776653 688888888888 777777777877
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHCCCCC
Q 011102 325 LGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM-EASNCLF 403 (493)
Q Consensus 325 m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M-~~~gi~p 403 (493)
.-.+ .+-++..-.+++.-+.++|+.++|.++..+-.+++..|+.. ..-.+.+-++...-.+..+.- ...+-.|
T Consensus 255 ~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 7664 55667777888999999999999999999998888888732 234556677777777777663 4556666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC
Q 011102 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474 (493)
Q Consensus 404 d~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 474 (493)
-.+.+|=..|.+.+.|.+|...|+.-.+ ..|+..+|+.+-++|.+.|+.++|.++.++-...-.+|+
T Consensus 329 --~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 329 --LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred --hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 5577777889999999999999996554 459999999999999999999999999988764434443
No 31
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.01 E-value=5.2e-09 Score=108.60 Aligned_cols=306 Identities=12% Similarity=-0.005 Sum_probs=180.6
Q ss_pred hhhhhhhhhccCCchhHHHHHHHHhhccCCCCHHHHHHHHhhhccc------CcHHHHHHHHHhCCChHHHHHHHHHHHh
Q 011102 151 SSRASICKQVYKNPSFLISLARDIKGLDSHKDVAEVLDKCGRFLRK------GSLSFTVRELGHMNLPERALQTFCWAQK 224 (493)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~~~~m~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~ 224 (493)
+...|+.|+..+|.+++ .+|+..|+++.|- .|.-|.-+ +.|+.++.+..+.++.+.+.
T Consensus 16 ~e~~gi~PnRvtyqsLi-------arYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------- 79 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLI-------ARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------- 79 (1088)
T ss_pred HHHhcCCCchhhHHHHH-------HHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------
Confidence 44556666555444333 4455556666665 55543322 36677777666666654443
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCchhhhHHH----hhcc--C----cHH---------------HHHHHHHHHHhcCCH
Q 011102 225 QPHLFPDDRLLASTVEVLARHHELKVPFKLEN----FVSL--A----SKG---------------VLEATAKGFVKGGNL 279 (493)
Q Consensus 225 ~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~----~~~~--~----~~~---------------~~~~li~~~~~~g~~ 279 (493)
.|-..||..+..+|...|++..-+..+. .... + ... --...|.-..-.|.+
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglw 155 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLW 155 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHH
Confidence 4556677777777777776533221111 0000 0 000 012333444445666
Q ss_pred HHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011102 280 KLAWKLLMVAKDGGRM-LDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLF 358 (493)
Q Consensus 280 ~~A~~l~~~m~~~g~~-pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 358 (493)
+.+++++..|...... |..+ .|.-+... +.-..++....+.-.+ .|+..+|.++++.-.-+|+++.|..++
T Consensus 156 aqllkll~~~Pvsa~~~p~~v----fLrqnv~~---ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNAPFQV----FLRQNVVD---NTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHhhCCcccccchHHH----HHHHhccC---CchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 6666666555432211 2111 24444443 2334444444433323 699999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 011102 359 HWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP 438 (493)
Q Consensus 359 ~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 438 (493)
.+|++.|+..+.+-|-.||-| .++..-+..++..|++.|+.|+..|+..-+..+.++|....+....+. +.| .
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~--~hg--~ 300 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQL--AHG--F 300 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccch--hhh--h
Confidence 999999999999988888887 888999999999999999999999999999888887664333222110 111 1
Q ss_pred CHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHCCCccCHHHHHHHHHhhhhccCC
Q 011102 439 TYDIYRDMIRIFMASGRLAK-----CRDVCKEAEMAGFKLDKQTVVELLQIEKESRIG 491 (493)
Q Consensus 439 ~~~ty~~li~~~~~~g~~~~-----A~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~r~g 491 (493)
+...+..+..+.....+.+. ....+.+..-.|+.-...+|...+++-.+++.|
T Consensus 301 tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e 358 (1088)
T KOG4318|consen 301 TAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGE 358 (1088)
T ss_pred hHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCc
Confidence 22233444443222222221 222233333346666667788777766566655
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.98 E-value=4.1e-06 Score=91.37 Aligned_cols=291 Identities=12% Similarity=0.034 Sum_probs=189.0
Q ss_pred hccCCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCch
Q 011102 176 GLDSHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKV 250 (493)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~ 250 (493)
.+...++.++|+++++++.... .+..++..+...++.++|++.++.+... .|+...+.. .++...+..+.
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~--layL~~~~~~~ 185 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMT--LSYLNRATDRN 185 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHH--HHHHHHhcchH
Confidence 4556688889999988776654 5666777888889999999998888744 455555533 34444333233
Q ss_pred hhhHHHhhcc----C-cHHHHHHHHHHHHhcCCHHHHHHHHH--------------------------------------
Q 011102 251 PFKLENFVSL----A-SKGVLEATAKGFVKGGNLKLAWKLLM-------------------------------------- 287 (493)
Q Consensus 251 ~~~l~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~l~~-------------------------------------- 287 (493)
.+++..+.++ | +...+.-++....+.|-...|+++..
T Consensus 186 ~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 186 YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 3466555543 2 34455555555555555444443333
Q ss_pred ----------HHHh-CCCCCCH-HHH-H---HHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCH
Q 011102 288 ----------VAKD-GGRMLDP-SIY-A---KLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKF 351 (493)
Q Consensus 288 ----------~m~~-~g~~pd~-~t~-~---~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~ 351 (493)
.+.. .+-.|.. .-| . =.+-++.+. +++.++++.++.+... +......+--++.++|...+++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r-~r~~~vi~~y~~l~~~-~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVR-HQTADLIKEYEAMEAE-GYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHh-hhHHHHHHHHHHhhhc-CCCCCHHHHHHHHHHHHhcCCc
Confidence 2221 1111221 111 1 233455666 7888888888888876 5554556777888888888899
Q ss_pred HHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHH
Q 011102 352 GVVESLFHWFTHSG-----RDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC-------------LFDLP-AYRVVI 412 (493)
Q Consensus 352 ~~A~~l~~~m~~~g-----~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi-------------~pd~~-ty~~li 412 (493)
++|+.+|+...... ..++......|..+|...+++++|..+++.+.+.-- .||-. .+..++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 99999988875432 233455567888888889999999999988876311 12222 234456
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHH
Q 011102 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476 (493)
Q Consensus 413 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 476 (493)
..+...|++.+|++.++++.... +-|......+-+.+...|...+|++.++.... +.|+..
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~ 484 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSL 484 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccH
Confidence 66788888999999998886443 34777788888888888888888888866554 356543
No 33
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.96 E-value=1e-05 Score=90.08 Aligned_cols=279 Identities=14% Similarity=0.090 Sum_probs=146.5
Q ss_pred CCCCHHHHHHHHhhhccc--CcHHHH---HHHHHhCCChHHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHHcCCCchhh
Q 011102 179 SHKDVAEVLDKCGRFLRK--GSLSFT---VRELGHMNLPERALQTFCWAQK-QPHLFPDDRLLASTVEVLARHHELKVPF 252 (493)
Q Consensus 179 ~~~~~~~a~~~~~~m~~~--~~~~~l---i~~~~~~g~~~~A~~l~~~m~~-~~g~~pd~~t~~~li~~~~~~g~~~~~~ 252 (493)
..+...++...+..|... +.-..+ --...+.|+.++|.++|+.... ...-.++.....-++..+.+.+.+....
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 335555555556555544 222222 2244678888899998887765 2223334445557777777765532211
Q ss_pred hHHH------------------------------hhccC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 011102 253 KLEN------------------------------FVSLA---SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPS 299 (493)
Q Consensus 253 ~l~~------------------------------~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 299 (493)
.+.. ...++ +...|..+-..+.. ++.++|...|.+..... |+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchH
Confidence 1100 00111 23345555555554 56666777665555432 5533
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011102 300 IYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHS 379 (493)
Q Consensus 300 t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~ 379 (493)
....+...+... |++++|...|+.+... .|+...+..+...+.+.|+.++|...|++..+.. ..+...+..+...
T Consensus 511 ~~L~lA~al~~~-Gr~eeAi~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~ 585 (987)
T PRK09782 511 QHRAVAYQAYQV-EDYATALAAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQ 585 (987)
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 322222333455 6777777777665432 2333344455555666666666666666665442 1222222233333
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 011102 380 RLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKC 459 (493)
Q Consensus 380 ~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 459 (493)
+.+.|++++|...+++..+. .|+...|..+-..+.+.|+.++|...|++..+..- -+...++.+-..+...|++++|
T Consensus 586 l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 34446666666666665543 34555566666666666666666666666554331 1344455555566666666666
Q ss_pred HHHHHHHHH
Q 011102 460 RDVCKEAEM 468 (493)
Q Consensus 460 ~~l~~~m~~ 468 (493)
.+.+++..+
T Consensus 663 i~~l~~AL~ 671 (987)
T PRK09782 663 REMLERAHK 671 (987)
T ss_pred HHHHHHHHH
Confidence 666666554
No 34
>PF12854 PPR_1: PPR repeat
Probab=98.96 E-value=8.3e-10 Score=69.17 Aligned_cols=32 Identities=34% Similarity=0.505 Sum_probs=14.2
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011102 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396 (493)
Q Consensus 365 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M 396 (493)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.94 E-value=3.8e-07 Score=92.72 Aligned_cols=280 Identities=14% Similarity=0.024 Sum_probs=207.0
Q ss_pred CCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHcCCCc-hhhh
Q 011102 181 KDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPH-LFPDDRLLASTVEVLARHHELK-VPFK 253 (493)
Q Consensus 181 ~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g-~~pd~~t~~~li~~~~~~g~~~-~~~~ 253 (493)
-...+|+..|.+.+... ...-+=.+|...++.++|.++|+...+... ..-+..+|.+++--+-+.-.+. .++
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq- 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ- 411 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH-
Confidence 45678888888744332 223445588899999999999999986533 2336678888886654432211 111
Q ss_pred HHHhhccC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCC
Q 011102 254 LENFVSLA-SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRML-DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331 (493)
Q Consensus 254 l~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~ 331 (493)
......+ ...+|.++-+.|.-.++.+.|++.|++..+. .| ...+|+-+=+.+... ..+|.|...|....
T Consensus 412 -~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~-ee~d~a~~~fr~Al----- 482 (638)
T KOG1126|consen 412 -DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIAT-EEFDKAMKSFRKAL----- 482 (638)
T ss_pred -HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhh-HHHHhHHHHHHhhh-----
Confidence 1133333 5679999999999999999999999999884 35 567888887888888 89999999998764
Q ss_pred CCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011102 332 NLSQQDCTAI---MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAY 408 (493)
Q Consensus 332 ~p~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty 408 (493)
..|...||++ --.|.|.++++.|+-.|++..+-+ +-+.+....+...+-+.|+.++|++++++.....-+ |...-
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 4577777765 568899999999999999877432 336677778888899999999999999998765432 22222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC
Q 011102 409 RVVIKLFVALNDISRAIRYFSKLKEAGFCP-TYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474 (493)
Q Consensus 409 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 474 (493)
---...+...++.++|+..++++++. .| +...|-.+-..|-+.|+.+.|+.-|--|.+..-++.
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 23344556678999999999999864 35 456678888999999999999998888876543333
No 36
>PF12854 PPR_1: PPR repeat
Probab=98.93 E-value=1.2e-09 Score=68.39 Aligned_cols=32 Identities=19% Similarity=0.454 Sum_probs=17.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 400 NCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431 (493)
Q Consensus 400 gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m 431 (493)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.91 E-value=1e-08 Score=99.02 Aligned_cols=247 Identities=9% Similarity=0.002 Sum_probs=109.9
Q ss_pred ccCCCCHHHHHHHHhhh-ccc-----C-cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCc
Q 011102 177 LDSHKDVAEVLDKCGRF-LRK-----G-SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELK 249 (493)
Q Consensus 177 ~~~~~~~~~a~~~~~~m-~~~-----~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~ 249 (493)
+-+.|++++|++++.+. ... . .|..+-...-..++.+.|++.++.+... +-. +...+..++.. ...++.+
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-~~~-~~~~~~~l~~l-~~~~~~~ 94 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-DKA-NPQDYERLIQL-LQDGDPE 94 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc-ccccccccccc-ccccccc
Confidence 44568889999988532 111 1 3444444555678899999999999865 322 34456666666 5666655
Q ss_pred hhhhH--HHhhccCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 011102 250 VPFKL--ENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGG-RMLDPSIYAKLILELGKNPDKYMLVMTLLDELG 326 (493)
Q Consensus 250 ~~~~l--~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~ 326 (493)
.+..+ ..+....+...+..++..+.+.++++++.++++...... ...+...|..+-..+.+. |+.++|.+.+++..
T Consensus 95 ~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~-G~~~~A~~~~~~al 173 (280)
T PF13429_consen 95 EALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL-GDPDKALRDYRKAL 173 (280)
T ss_dssp -----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 44432 234445566678889999999999999999999987643 346777788888888898 99999999999988
Q ss_pred hcCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 011102 327 QRDDLNL-SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405 (493)
Q Consensus 327 ~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~ 405 (493)
+. .| |....+.++..+...|+.+++.++++...+.. ..|...|..+..+|...|+.++|+..|++..+.. +-|.
T Consensus 174 ~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 174 EL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred Hc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 75 35 47788899999999999999999998887654 4455568899999999999999999999977632 2367
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 406 PAYRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 406 ~ty~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
.....+.+++...|+.++|.++..+..
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 778888899999999999999887654
No 38
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.91 E-value=7.5e-06 Score=91.16 Aligned_cols=189 Identities=6% Similarity=-0.129 Sum_probs=129.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC
Q 011102 270 AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQ 349 (493)
Q Consensus 270 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g 349 (493)
...+.+.|++++|...|+++... .|+...+..+...+.+. |+.++|.+.++...+. . ..+...+..+...+.+.|
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~-Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAA-GNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHC-CCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCC
Confidence 33445778888888888876553 34444555555666777 7888888888877654 2 122222333333444558
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 011102 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD-LPAYRVVIKLFVALNDISRAIRYF 428 (493)
Q Consensus 350 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd-~~ty~~li~~~~~~g~~~~A~~~~ 428 (493)
++++|...|++..+. .|+...|..+-..+.+.|+.++|++.+++..+. .|+ ...++.+-..+...|+.++|...|
T Consensus 591 r~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 591 QPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888877654 466777888888888888888888888887664 343 445566666788888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 429 SKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 429 ~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
+...+..- -+...+..+-.++...|++++|+..+++..+
T Consensus 667 ~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 667 ERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 87775432 2556677788888888888888888888765
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.90 E-value=3.8e-06 Score=85.30 Aligned_cols=273 Identities=8% Similarity=-0.015 Sum_probs=192.6
Q ss_pred cHHHHHHHHHh--CCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhc----cCcHHHHH--HH
Q 011102 198 SLSFTVRELGH--MNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVS----LASKGVLE--AT 269 (493)
Q Consensus 198 ~~~~li~~~~~--~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~----~~~~~~~~--~l 269 (493)
.+..+..++.. .|+++.|.+.+....+. .-.| ...|.....+..+.|+.+.+... +.. .++...+- ..
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~-~~~p-~l~~llaA~aA~~~g~~~~A~~~--l~~A~~~~~~~~~~~~l~~ 159 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADH-AEQP-VVNYLLAAEAAQQRGDEARANQH--LERAAELADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-ccch-HHHHHHHHHHHHHCCCHHHHHHH--HHHHHhcCCcchHHHHHHH
Confidence 34444444433 59999999888876543 1112 22343334444677775544433 332 23333322 33
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCH------HHHHHHHH
Q 011102 270 AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQ------QDCTAIMK 343 (493)
Q Consensus 270 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~------~~~~~li~ 343 (493)
...+...|+++.|.+.++++.+.. +-++..+..+...|.+. |+|++|.+++..+.+.....+.. ..|..++.
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~-gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRT-GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 678889999999999999998866 23566778889999999 99999999999999873332221 23444455
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 011102 344 VGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423 (493)
Q Consensus 344 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~ 423 (493)
...+..+.+...++++.+.+. .+.+......+..++...|+.++|.+++++..+. .||.. -.++.+....++.++
T Consensus 238 ~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~ 312 (398)
T PRK10747 238 QAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQ 312 (398)
T ss_pred HHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHH
Confidence 555556667777777776432 2457788899999999999999999999998774 44542 234555567799999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHh
Q 011102 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484 (493)
Q Consensus 424 A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~~ 484 (493)
+.+..+...+..- -|...+.++-..+.+.|++++|.+.|+...+ ..|+..+|..|-.+
T Consensus 313 al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~ 370 (398)
T PRK10747 313 LEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADA 370 (398)
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHH
Confidence 9999999886542 3556678899999999999999999999987 57999987777664
No 40
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.87 E-value=2.1e-06 Score=79.42 Aligned_cols=199 Identities=14% Similarity=0.011 Sum_probs=150.5
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcC
Q 011102 198 SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGG 277 (493)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g 277 (493)
.+..+...|...|++++|.+.|+...+. .|+ +...+..+...|...|
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~---~p~------------------------------~~~~~~~la~~~~~~~ 79 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEH---DPD------------------------------DYLAYLALALYYQQLG 79 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---Ccc------------------------------cHHHHHHHHHHHHHcC
Confidence 5666677788888888888888877643 122 1234455667777888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011102 278 NLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESL 357 (493)
Q Consensus 278 ~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 357 (493)
++++|.+.+++..+.. ..+...+..+...+... |++++|.+.+++.............+..+...+.+.|++++|...
T Consensus 80 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 80 ELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQ-GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 8999999998887754 23456677777788888 899999999999876522233455677778888999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433 (493)
Q Consensus 358 ~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 433 (493)
|++..+.. +.+...+..+...+...|++++|.+.+++..+. ...+...+..+...+...|+.++|..+++.+..
T Consensus 158 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 158 LTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99887643 234667888889999999999999999998776 334567777788888899999999998887764
No 41
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.86 E-value=7.6e-06 Score=89.31 Aligned_cols=285 Identities=12% Similarity=-0.001 Sum_probs=181.5
Q ss_pred hhccCCCCHHHHHHHHhhhcccC---cHHHH--HHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCc
Q 011102 175 KGLDSHKDVAEVLDKCGRFLRKG---SLSFT--VRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELK 249 (493)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~~---~~~~l--i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~ 249 (493)
..+...|+.++|+..+++...+. .+..+ ...|...|++++|+++|+.+.+...- |...+..++..+...++
T Consensus 76 ~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~--n~~~l~gLa~~y~~~~q-- 151 (822)
T PRK14574 76 QIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT--NPDLISGMIMTQADAGR-- 151 (822)
T ss_pred HHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhhcCC--
Confidence 33445588888888888766543 22223 34667778888888888888764211 33445566667777776
Q ss_pred hhhhHHHhhc----cCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011102 250 VPFKLENFVS----LASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRML-DPSIYAKLILELGKNPDKYMLVMTLLDE 324 (493)
Q Consensus 250 ~~~~l~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~~~~~~~a~~l~~~ 324 (493)
..+++..+.. .++...+-.++..+...++..+|++.++++.+.. | +...+..++.++.+. |-...|.++..+
T Consensus 152 ~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~-~~~~~a~~l~~~ 228 (822)
T PRK14574 152 GGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRN-RIVEPALRLAKE 228 (822)
T ss_pred HHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc-CCcHHHHHHHHh
Confidence 4444444433 2233344444444444555656888888888764 5 455667777788888 777777766655
Q ss_pred HhhcCCCCCCHHHH------HHHHHHH-----HHcCC---HHHHHHHHHHHHH-cCCCCCH-----HHHHHHHHHHHcCC
Q 011102 325 LGQRDDLNLSQQDC------TAIMKVG-----IRLQK---FGVVESLFHWFTH-SGRDPTV-----VMYTTLIHSRLSEK 384 (493)
Q Consensus 325 m~~~~g~~p~~~~~------~~li~~~-----~~~g~---~~~A~~l~~~m~~-~g~~p~~-----~ty~~li~~~~~~g 384 (493)
-..- +.+...-+ ..+|..- ....+ .+.|+.-++.+.. .+-.|.. ...-=.+-++...|
T Consensus 229 ~p~~--f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~ 306 (822)
T PRK14574 229 NPNL--VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRH 306 (822)
T ss_pred Cccc--cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhh
Confidence 3221 22221111 1111100 01122 3445555555443 2233432 22234556788899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHH
Q 011102 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG-----FCPTYDIYRDMIRIFMASGRLAKC 459 (493)
Q Consensus 385 ~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~ty~~li~~~~~~g~~~~A 459 (493)
++.++.+.++.|...|...-..+--++-++|...++.++|..+|+.+.... ..++......|.-+|...+++++|
T Consensus 307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A 386 (822)
T PRK14574 307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA 386 (822)
T ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence 999999999999998865444577889999999999999999999987432 233555568899999999999999
Q ss_pred HHHHHHHHH
Q 011102 460 RDVCKEAEM 468 (493)
Q Consensus 460 ~~l~~~m~~ 468 (493)
..+++++.+
T Consensus 387 ~~~l~~~~~ 395 (822)
T PRK14574 387 YQFAVNYSE 395 (822)
T ss_pred HHHHHHHHh
Confidence 999999987
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.83 E-value=8.4e-06 Score=83.13 Aligned_cols=274 Identities=10% Similarity=0.011 Sum_probs=185.9
Q ss_pred cHHHHHHHHH--hCCChHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHcCCCchhhhHHHhhc----cCcHH--HHHH
Q 011102 198 SLSFTVRELG--HMNLPERALQTFCWAQKQPHLFPDD-RLLASTVEVLARHHELKVPFKLENFVS----LASKG--VLEA 268 (493)
Q Consensus 198 ~~~~li~~~~--~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~li~~~~~~g~~~~~~~l~~~~~----~~~~~--~~~~ 268 (493)
.+..+..++. ..|+++.|.+.+....+. .|+. ..+-....+....|+.+.+... +.. .++.. +.-+
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~--l~~a~~~~p~~~l~~~~~ 158 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQH--LEEAAELAGNDNILVEIA 158 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHH--HHHHHHhCCcCchHHHHH
Confidence 4555666553 479999999999887654 3443 3334445566677875444433 322 23332 3334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHH-HHHHHH--
Q 011102 269 TAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCT-AIMKVG-- 345 (493)
Q Consensus 269 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~-~li~~~-- 345 (493)
....+...|+++.|.+.++.+.+.. +-+...+..+...+.+. |++++|.+++..+.+. ++. +...+. .-..++
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~-~d~~~a~~~l~~l~k~-~~~-~~~~~~~l~~~a~~~ 234 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRS-GAWQALDDIIDNMAKA-GLF-DDEEFADLEQKAEIG 234 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHc-CCC-CHHHHHHHHHHHHHH
Confidence 5778888999999999999999976 22556788888999999 9999999999999987 443 333332 112222
Q ss_pred -HHcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHc
Q 011102 346 -IRLQKFGVVESLFHWFTHSGR---DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPA---YRVVIKLFVAL 418 (493)
Q Consensus 346 -~~~g~~~~A~~l~~~m~~~g~---~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~t---y~~li~~~~~~ 418 (493)
...+..+++.+.+..+.+..- +.+...+..+...+...|+.++|.+++++..+. .||... ...........
T Consensus 235 ~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 235 LLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred HHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCC
Confidence 233333333445555554321 137888999999999999999999999998875 344432 12222223445
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHh
Q 011102 419 NDISRAIRYFSKLKEAGFCPTY---DIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484 (493)
Q Consensus 419 g~~~~A~~~~~~m~~~g~~p~~---~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~~ 484 (493)
++.+.+.+.++...+. .|+. ....++-..+.+.|++++|.+.|+........||..++..+-.+
T Consensus 313 ~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~l 379 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADA 379 (409)
T ss_pred CChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHH
Confidence 7888888888877643 2443 45568888899999999999999965555568999888777664
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.83 E-value=2.3e-05 Score=73.54 Aligned_cols=278 Identities=14% Similarity=0.088 Sum_probs=127.0
Q ss_pred CCHHHHHHHHhhhcccC--cHH---HHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHH--HHHHHHHHHcCCCchhhh
Q 011102 181 KDVAEVLDKCGRFLRKG--SLS---FTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLL--ASTVEVLARHHELKVPFK 253 (493)
Q Consensus 181 ~~~~~a~~~~~~m~~~~--~~~---~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~--~~li~~~~~~g~~~~~~~ 253 (493)
.+.+.|.+.|-+|.+.+ +|. +|=+.|-+.|.+|.|+++-+...+.++..-+...+ --|-.-|-+.|-+|.++.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 44456666666665544 332 33345556666666666666666553333332221 123333445555555444
Q ss_pred HHHhhccCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHhcCCCCHHHHHHHHHH
Q 011102 254 LENFVSLAS-----KGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI----YAKLILELGKNPDKYMLVMTLLDE 324 (493)
Q Consensus 254 l~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t----~~~li~~~~~~~~~~~~a~~l~~~ 324 (493)
+ |....+ ....-.|+..|-+..+|++|.++-+++.+.|-.+..+- |--+-..+... .+++.|..++.+
T Consensus 129 ~--f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~-~~~d~A~~~l~k 205 (389)
T COG2956 129 I--FNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS-SDVDRARELLKK 205 (389)
T ss_pred H--HHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh-hhHHHHHHHHHH
Confidence 4 322222 22345555666666666666666655555442222211 11111122222 455555555555
Q ss_pred HhhcCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 011102 325 LGQRDDLNLSQQDCT-AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF 403 (493)
Q Consensus 325 m~~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~p 403 (493)
..+. .|+.+--+ .+-+.+...|+++.|.+.++...+....--..+-..|..+|...|+.++....+.++.+..-.+
T Consensus 206 Alqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 206 ALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 4433 12222222 2234555556666666666665554333333444555566666666666666665555442222
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH
Q 011102 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA---SGRLAKCRDVCKEAEM 468 (493)
Q Consensus 404 d~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~---~g~~~~A~~l~~~m~~ 468 (493)
+. -..+-.--....-.+.|..++.+-... +|+...+.-+|+.-.. .|+..+-+.+++.|..
T Consensus 283 ~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DA--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cH--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 22 122222222222234444443333322 2566666666555432 2334444555555543
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=3.6e-06 Score=81.80 Aligned_cols=268 Identities=15% Similarity=0.068 Sum_probs=182.3
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH----HcCCCchhhhHHHhhccCcHHHHHHHH-----HHHHh
Q 011102 205 ELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLA----RHHELKVPFKLENFVSLASKGVLEATA-----KGFVK 275 (493)
Q Consensus 205 ~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~----~~g~~~~~~~l~~~~~~~~~~~~~~li-----~~~~~ 275 (493)
.|.++|+++.|++++.-..++ |..|-++...-+| -.|.-+.+.+-.--..-.+..-||.-. +.-..
T Consensus 428 ~~lk~~d~~~aieilkv~~~k-----dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKK-----DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFA 502 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhc-----cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeee
Confidence 578899999999999988876 3333332222222 112212222221111112222233221 11234
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011102 276 GGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVE 355 (493)
Q Consensus 276 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 355 (493)
+|++++|.+.|++.....-.-....||+=+. +-.. |++++|++.|-.+..- +.-+..+.-.+-+.|--..+...|.
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt-~e~~-~~ldeald~f~klh~i--l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLT-AEAL-GNLDEALDCFLKLHAI--LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhccc-HHHh-cCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 6899999999999887543223333443332 3344 8899999999877543 3345667777788888888899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 011102 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435 (493)
Q Consensus 356 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g 435 (493)
+++-+.. .-++-|....+-|-.-|-+.|+-..|.+.+-+--. -+.-|..|...|-.-|....-+++|..+|++.. =
T Consensus 579 e~~~q~~-slip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--l 654 (840)
T KOG2003|consen 579 ELLMQAN-SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--L 654 (840)
T ss_pred HHHHHhc-ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--h
Confidence 8886544 22345678888899999999999999887765332 245577888888888888889999999998764 3
Q ss_pred CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHhhh
Q 011102 436 FCPTYDIYRDMIRIFM-ASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEK 486 (493)
Q Consensus 436 ~~p~~~ty~~li~~~~-~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~~~~ 486 (493)
++|+..-|..||..|. +.|++.+|++++++..++ +.-|.....-|+++|.
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~ 705 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAG 705 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhc
Confidence 5799999999988876 679999999999998654 7778888888888753
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.74 E-value=3.9e-05 Score=72.04 Aligned_cols=265 Identities=9% Similarity=0.085 Sum_probs=187.2
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHH-hhccCcH------HHHHHHHHHHHhcCCHHH
Q 011102 209 MNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLEN-FVSLASK------GVLEATAKGFVKGGNLKL 281 (493)
Q Consensus 209 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~-~~~~~~~------~~~~~li~~~~~~g~~~~ 281 (493)
+.+.++|.++|-+|.+. -.-+..+--+|=+.|-+.|..|.+..++. ....||. ...-.|-.-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 46789999999999864 11122234556677888888665555543 2222321 234567777889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCH----HHHHHHHHHHHHcCCHHHHHHH
Q 011102 282 AWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQ----QDCTAIMKVGIRLQKFGVVESL 357 (493)
Q Consensus 282 A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~l 357 (493)
|+.+|..+.+.|. --......|+.-|-+. .+|++|+++-+++.+. +-++.. ..|--+-..+.-..+++.|..+
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~t-reW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIYQAT-REWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 9999999988542 2334567889999999 9999999999988776 333332 2566777778888899999999
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 011102 358 FHWFTHSGRDPTV-VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGF 436 (493)
Q Consensus 358 ~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~ 436 (493)
+.+-.+. .|+. ..--.+-+.+...|++..|.+.++...+.+..--..+...|..+|.+.|+.++...++.++.+...
T Consensus 203 l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 203 LKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 9987654 3433 333345577889999999999999998886555566788999999999999999999999886543
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHh
Q 011102 437 CPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484 (493)
Q Consensus 437 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~~ 484 (493)
.++.. ..|-+.-....-.+.|..++.+-.. -+|+...+..||..
T Consensus 281 g~~~~--l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~ 324 (389)
T COG2956 281 GADAE--LMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDY 324 (389)
T ss_pred CccHH--HHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHh
Confidence 33332 3333333333334455554444333 48999999999874
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.9e-05 Score=77.37 Aligned_cols=297 Identities=12% Similarity=0.004 Sum_probs=212.5
Q ss_pred CCHHHHHHHHhhhcccC-----cHHHHHH-HHHhCCChHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCCc-hhh
Q 011102 181 KDVAEVLDKCGRFLRKG-----SLSFTVR-ELGHMNLPERALQTFCWAQKQPHLFP-DDRLLASTVEVLARHHELK-VPF 252 (493)
Q Consensus 181 ~~~~~a~~~~~~m~~~~-----~~~~li~-~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~li~~~~~~g~~~-~~~ 252 (493)
...++++.......+.| -+-+.+. +.-...+++.|+.+|++..+...... |..+|+.++-.--...++. .++
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 34555555555444444 1122222 34456789999999999998633333 6668888775443322211 122
Q ss_pred hHHHhhccCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCC
Q 011102 253 KLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLD-PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL 331 (493)
Q Consensus 253 ~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~ 331 (493)
.+...+. -...|+.++-+.|+-.++.++|...|+...+.+ |. ...|+-+-+.|... .....|.+-+....+. .
T Consensus 321 ~v~~idK-yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEm-KNt~AAi~sYRrAvdi--~ 394 (559)
T KOG1155|consen 321 NVSNIDK-YRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEM-KNTHAAIESYRRAVDI--N 394 (559)
T ss_pred HHHHhcc-CCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHh-cccHHHHHHHHHHHhc--C
Confidence 1111111 133578888899999999999999999998865 43 45677777889999 8899999999988764 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011102 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVV 411 (493)
Q Consensus 332 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~l 411 (493)
+.|-..|=.|-.+|.-.+...-|+-.|++-.+-. +-|...|.+|-+.|.+.++.++|.+-|......|= .+...|..|
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~L 472 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRL 472 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHH
Confidence 4577788899999999999999999999876432 44889999999999999999999999999887653 366889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHhh
Q 011102 412 IKLFVALNDISRAIRYFSKLKE----AGFCPTY--DIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIE 485 (493)
Q Consensus 412 i~~~~~~g~~~~A~~~~~~m~~----~g~~p~~--~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~~~ 485 (493)
-+.|-+-++..+|...|+.-.+ .|..-+. ..---|..-+.+.+++++|......... | .+...--..|++-+
T Consensus 473 akLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~-~-~~e~eeak~LlRei 550 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK-G-ETECEEAKALLREI 550 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-C-CchHHHHHHHHHHH
Confidence 9999999999999999887653 3443231 2222355567789999999887655543 3 66666777777755
Q ss_pred hh
Q 011102 486 KE 487 (493)
Q Consensus 486 ~~ 487 (493)
+.
T Consensus 551 r~ 552 (559)
T KOG1155|consen 551 RK 552 (559)
T ss_pred HH
Confidence 44
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=98.69 E-value=1.4e-05 Score=84.86 Aligned_cols=257 Identities=8% Similarity=-0.064 Sum_probs=158.8
Q ss_pred cHHHHHHHHHh-----CCChHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHc---CCC----chhhhHHHhhc-----
Q 011102 198 SLSFTVRELGH-----MNLPERALQTFCWAQKQPHLFPDD-RLLASTVEVLARH---HEL----KVPFKLENFVS----- 259 (493)
Q Consensus 198 ~~~~li~~~~~-----~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~li~~~~~~---g~~----~~~~~l~~~~~----- 259 (493)
.|...+.+-.. .+..++|+++|++..+. .|+. ..|..+..++... |.. +..+++..+..
T Consensus 258 a~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 258 STMVYLRGKHELNQYTPYSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred HHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 44455555322 23467999999988753 4543 3454444433322 211 12333333332
Q ss_pred cCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCH-HH
Q 011102 260 LASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLD-PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQ-QD 337 (493)
Q Consensus 260 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~-~~ 337 (493)
..+...|..+-..+...|++++|...|++..+.. |+ ...|..+-..+... |++++|...+++..+. .|+. ..
T Consensus 335 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~-G~~~eAi~~~~~Al~l---~P~~~~~ 408 (553)
T PRK12370 335 HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMA-GQLEEALQTINECLKL---DPTRAAA 408 (553)
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhc---CCCChhh
Confidence 2255677778788888899999999999888764 54 45666777778888 8999999999988764 2432 22
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHH
Q 011102 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPA-YRVVIKLFV 416 (493)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~t-y~~li~~~~ 416 (493)
+..+...+...|++++|...+++..+..-+-+...+..+-..|...|+.++|.+.+.++... .|+..+ .+.+-..|+
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 33344456678889999999888765432224455677778888899999999998886543 344333 344445566
Q ss_pred HcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 011102 417 ALNDISRAIRYFSKLKE-AGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470 (493)
Q Consensus 417 ~~g~~~~A~~~~~~m~~-~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 470 (493)
..| +.|...++.+.+ .+-.+....+..++ |.-.|+-+.+..+ +++.+.|
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhhhHHHHHH-HHhhccc
Confidence 666 477777777662 22333333344444 3444555555444 7776553
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=3.9e-06 Score=85.58 Aligned_cols=259 Identities=14% Similarity=0.027 Sum_probs=186.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhc------cCcHHHHHHHHHHHHhcCCHHHHHH
Q 011102 211 LPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVS------LASKGVLEATAKGFVKGGNLKLAWK 284 (493)
Q Consensus 211 ~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~ 284 (493)
+.++|+..|.....+ +.-+..+..-+-.+|-..++.+.+++++.... ..+..+|.+.+-.+-+. -++.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 467899999885533 22233555666777777777666666533222 23566888888765432 2233
Q ss_pred HHH-HHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 285 LLM-VAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNL-SQQDCTAIMKVGIRLQKFGVVESLFHWFT 362 (493)
Q Consensus 285 l~~-~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 362 (493)
.+. ++.+ --+-.+.||-++-++|.-. ++++.|++.|++..+- .| ...+|+.+-+-+.....+|.|...|+.-.
T Consensus 408 ~Laq~Li~-~~~~sPesWca~GNcfSLQ-kdh~~Aik~f~RAiQl---dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 408 YLAQDLID-TDPNSPESWCALGNCFSLQ-KDHDTAIKCFKRAIQL---DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHHHh-hCCCCcHHHHHhcchhhhh-hHHHHHHHHHHHhhcc---CCccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 332 2222 1234788999999999999 9999999999998763 45 67888988888899999999999999877
Q ss_pred HcCCCCCHHHHHH---HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 011102 363 HSGRDPTVVMYTT---LIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT 439 (493)
Q Consensus 363 ~~g~~p~~~ty~~---li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 439 (493)
..|...||+ |--.|.+.++++.|+--|+...+-+- -+.+....+-..+-+.|+.|+|+++|++.....-+ |
T Consensus 483 ----~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n 556 (638)
T KOG1126|consen 483 ----GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-N 556 (638)
T ss_pred ----cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-C
Confidence 667766665 56789999999999999998776432 24555666667788999999999999998865544 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHH-Hhhhhc
Q 011102 440 YDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL-QIEKES 488 (493)
Q Consensus 440 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll-~~~~~~ 488 (493)
..+---....+...+++++|+..++++++ +.|+..+--.|+ +.|++-
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRL 604 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHH
Confidence 33333355667788999999999999987 677766655444 566553
No 49
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.64 E-value=9.3e-06 Score=83.13 Aligned_cols=232 Identities=15% Similarity=0.035 Sum_probs=128.6
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHhC----CC-CCCCHHH-HHHHHHHHHHcCCCchhhhHHHhhccC----------
Q 011102 198 SLSFTVRELGHMNLPERALQTFCWAQKQ----PH-LFPDDRL-LASTVEVLARHHELKVPFKLENFVSLA---------- 261 (493)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----~g-~~pd~~t-~~~li~~~~~~g~~~~~~~l~~~~~~~---------- 261 (493)
+...+-..|...|+++.|..++.+..+. .| ..|+..+ .+.+-..|...++++. ++..|.+..
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~e--Av~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDE--AVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHHHHhcCCC
Confidence 3344666777777777777777665532 12 1233322 2224445555565333 333233221
Q ss_pred ---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-CCHHH-HHHHHHHHhcCCCCHHHHHHHHHHHhhcC--
Q 011102 262 ---SKGVLEATAKGFVKGGNLKLAWKLLMVAKD-----GGRM-LDPSI-YAKLILELGKNPDKYMLVMTLLDELGQRD-- 329 (493)
Q Consensus 262 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~-pd~~t-~~~li~~~~~~~~~~~~a~~l~~~m~~~~-- 329 (493)
-..+++.|-..|.+.|++++|...++...+ .|.. |.+.+ ++.+...|+.. +++++|..+++...+..
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~-~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSM-NEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHh
Confidence 123577788888888888888777765533 2221 22222 44555566666 88888888877543320
Q ss_pred CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011102 330 DLNLS----QQDCTAIMKVGIRLQKFGVVESLFHWFTHS-----G-RDP-TVVMYTTLIHSRLSEKKCREALTVVWNMEA 398 (493)
Q Consensus 330 g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~ 398 (493)
-+.++ ..+|+.|-..|-+.|++++|+++|++.... | ..+ .-..+|-|-..|.+.++.++|.++|.+-..
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 12222 236777777777788888887777765431 1 112 234566666677777777777777665322
Q ss_pred ----CCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 399 ----SNC-LFDL-PAYRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 399 ----~gi-~pd~-~ty~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
.|. .||+ .+|..|...|...|++++|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 221 1222 456666666666666666666655443
No 50
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.56 E-value=2e-05 Score=80.71 Aligned_cols=245 Identities=13% Similarity=0.058 Sum_probs=169.9
Q ss_pred HHHHHHHcCCCchhhhHHHhh----------ccCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HH
Q 011102 238 TVEVLARHHELKVPFKLENFV----------SLASKG-VLEATAKGFVKGGNLKLAWKLLMVAKDG-----G-RMLD-PS 299 (493)
Q Consensus 238 li~~~~~~g~~~~~~~l~~~~----------~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~pd-~~ 299 (493)
+...|...|+++.+..+.... ..+... ..+.+-..|...+++++|..+|+++..- | ..|. ..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 777888888877766553211 111222 3456777889999999999999998752 2 1122 23
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhh----cCCCC-CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCC-
Q 011102 300 IYAKLILELGKNPDKYMLVMTLLDELGQ----RDDLN-LSQQ-DCTAIMKVGIRLQKFGVVESLFHWFTH---SGRDPT- 369 (493)
Q Consensus 300 t~~~li~~~~~~~~~~~~a~~l~~~m~~----~~g~~-p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~- 369 (493)
+++.|=..|++. |++++|...+++..+ ..|.. |.+. -++.+...|+..+++++|..+++.-.+ .-..++
T Consensus 285 ~l~nLa~ly~~~-GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 285 TLNNLAVLYYKQ-GKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 566666689999 999999888876532 11222 2222 456778888999999999999986542 112222
Q ss_pred ---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH----HCC
Q 011102 370 ---VVMYTTLIHSRLSEKKCREALTVVWNMEAS----NC--LFD-LPAYRVVIKLFVALNDISRAIRYFSKLK----EAG 435 (493)
Q Consensus 370 ---~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----gi--~pd-~~ty~~li~~~~~~g~~~~A~~~~~~m~----~~g 435 (493)
.-+|+.|-..|...|++++|.+++++..+. +- .+. -..++-|-..|.+.++.++|.++|.+-. ..|
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 357999999999999999999999987542 11 222 3567778888999999999999998654 333
Q ss_pred CC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------CCCccCHHHHHHHHH
Q 011102 436 FC-PT-YDIYRDMIRIFMASGRLAKCRDVCKEAEM------AGFKLDKQTVVELLQ 483 (493)
Q Consensus 436 ~~-p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~------~g~~pd~~t~~~Ll~ 483 (493)
.. |+ ..+|..|...|.+.|++++|.++.+.... ....|+.........
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLA 499 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhh
Confidence 21 23 46789999999999999999999887752 235566555554443
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=98.54 E-value=3.7e-05 Score=81.54 Aligned_cols=180 Identities=10% Similarity=-0.037 Sum_probs=135.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHcCCHHH
Q 011102 276 GGNLKLAWKLLMVAKDGGRML-DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNL-SQQDCTAIMKVGIRLQKFGV 353 (493)
Q Consensus 276 ~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~ 353 (493)
.+++++|...+++..+.. | +...+..+-..+... |++++|...|++..+. .| +...+..+-..|...|++++
T Consensus 317 ~~~~~~A~~~~~~Al~ld--P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~G~~~e 390 (553)
T PRK12370 317 QNAMIKAKEHAIKATELD--HNNPQALGLLGLINTIH-SEYIVGSLLFKQANLL---SPISADIKYYYGWNLFMAGQLEE 390 (553)
T ss_pred chHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHH
Confidence 355899999999998864 4 556676766677788 9999999999998765 34 45677888889999999999
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 354 VESLFHWFTHSGRDPTV-VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD-LPAYRVVIKLFVALNDISRAIRYFSKL 431 (493)
Q Consensus 354 A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd-~~ty~~li~~~~~~g~~~~A~~~~~~m 431 (493)
|...|++..+. .|+. ..+..+...+...|++++|.+.+++..+.. .|+ ...+..+-..+...|+.++|...+.++
T Consensus 391 Ai~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 391 ALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 99999998765 3432 233445556777899999999999987653 243 445667777888999999999999987
Q ss_pred HHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 432 KEAGFCPT-YDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 432 ~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
... .|+ ....+.+...|+..| ++|...++.+.+
T Consensus 468 ~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 468 STQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred hhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 643 233 344556666777777 578887777754
No 52
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.49 E-value=6.3e-05 Score=79.33 Aligned_cols=347 Identities=14% Similarity=0.112 Sum_probs=235.5
Q ss_pred ccchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhHHHhhh----hhhhhhhhhccCCchhHHHHHHH
Q 011102 98 WESEELEAISSLFQGRIPQKPGRLYRERPLPLPLPHRLRPLELPTPKKRVCLA----SSRASICKQVYKNPSFLISLARD 173 (493)
Q Consensus 98 ~~~~~~~~a~~lf~~m~~g~~p~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~l~~l~~~ 173 (493)
+-.|+++.|..++.+...+.+.+...|-.|. ..|...|+..++ +..+...|..+ .+ +.+.
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~----------~IyEqrGd~eK~l~~~llAAHL~p~d~---e~---W~~l 213 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLG----------EIYEQRGDIEKALNFWLLAAHLNPKDY---EL---WKRL 213 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHH----------HHHHHcccHHHHHHHHHHHHhcCCCCh---HH---HHHH
Confidence 3359999999999999777777888888888 778888887777 44455554433 22 2222
Q ss_pred HhhccCCCCHHHHHHHHhhhcccC--cHHHH---HHHHHhCCChHHHHHHHHHHHhCCCCCCCHH-HHHH----HHHHHH
Q 011102 174 IKGLDSHKDVAEVLDKCGRFLRKG--SLSFT---VRELGHMNLPERALQTFCWAQKQPHLFPDDR-LLAS----TVEVLA 243 (493)
Q Consensus 174 l~~~~~~~~~~~a~~~~~~m~~~~--~~~~l---i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~----li~~~~ 243 (493)
-....+.|.+..|.-.|.+.+... .|-.+ +..|-+.|+...|.+-|.++....+ |+.. -+-. +++.+-
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p--~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP--PVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC--chhHHHHHHHHHHHHHHHH
Confidence 233455688888888888766543 34333 5578889999999999999975422 2222 2222 334444
Q ss_pred HcCCCchhhhHHHhhc-------cCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---------------
Q 011102 244 RHHELKVPFKLENFVS-------LASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIY--------------- 301 (493)
Q Consensus 244 ~~g~~~~~~~l~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~--------------- 301 (493)
..++ ...++..+.. ..+...+|+++..|.+...++.|......+......+|..-|
T Consensus 292 ~~~~--~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 292 THNE--RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred HhhH--HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 4444 2333333222 123346899999999999999999999888874444444333
Q ss_pred -------H----HHHHHHhcCCCCHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011102 302 -------A----KLILELGKNPDKYMLVMTLLDELGQRDD--LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP 368 (493)
Q Consensus 302 -------~----~li~~~~~~~~~~~~a~~l~~~m~~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 368 (493)
. -++-++... +..+....+....... . +.-++..|.-+-.+|...|++.+|.++|..+...-.--
T Consensus 370 ~~~~~s~~l~v~rl~icL~~L-~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~ 447 (895)
T KOG2076|consen 370 VGKELSYDLRVIRLMICLVHL-KERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ 447 (895)
T ss_pred CCCCCCccchhHhHhhhhhcc-cccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc
Confidence 1 122333343 4444555555555444 4 33455678889999999999999999999998776666
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH--------HCCCCCC
Q 011102 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL-PAYRVVIKLFVALNDISRAIRYFSKLK--------EAGFCPT 439 (493)
Q Consensus 369 ~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~-~ty~~li~~~~~~g~~~~A~~~~~~m~--------~~g~~p~ 439 (493)
+...|--+-..|...|..++|.+.++..... .||. -.-.+|-..+-+.|+.++|.+.++.|. ..+..|+
T Consensus 448 ~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e 525 (895)
T KOG2076|consen 448 NAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPE 525 (895)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHH
Confidence 7888999999999999999999999987764 3443 233345556788999999999999865 2334556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 440 YDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 440 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
...---..+.|...|+.++=..+-.+|..
T Consensus 526 ~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 526 RRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 66666677788889998886666666653
No 53
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.49 E-value=0.00054 Score=72.53 Aligned_cols=181 Identities=11% Similarity=0.034 Sum_probs=106.6
Q ss_pred hccCCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCCc
Q 011102 176 GLDSHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFP-DDRLLASTVEVLARHHELK 249 (493)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~li~~~~~~g~~~ 249 (493)
.+++ |++++|.+++.+..+.+ .|-+|-..|-+.|+.++|+..+-..- .+.| |...|..+-......|.++
T Consensus 149 lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA---HL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA---HLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHH---hcCCCChHHHHHHHHHHHhcccHH
Confidence 4444 99999999999888776 78889999999999999988865554 3333 5556777777777777644
Q ss_pred hhhhHHHhhc-----cCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHhcCCCCHHHHHH
Q 011102 250 VPFKLENFVS-----LASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIY----AKLILELGKNPDKYMLVMT 320 (493)
Q Consensus 250 ~~~~l~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~----~~li~~~~~~~~~~~~a~~ 320 (493)
. +...|.+ ..+...+--=+..|-+.|+...|+.-|.++.+..-..|..-+ -.++..+... ++.+.|.+
T Consensus 225 q--A~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~-~~~e~a~~ 301 (895)
T KOG2076|consen 225 Q--ARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH-NERERAAK 301 (895)
T ss_pred H--HHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh-hHHHHHHH
Confidence 3 3332322 112222223344566667777777777666664321111111 1233444444 44466666
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 321 LLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTH 363 (493)
Q Consensus 321 l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 363 (493)
.++......+-..+..+++++...|.+...++.|......+..
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 5555444323334444556666666666666666666655554
No 54
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.41 E-value=3.4e-07 Score=57.67 Aligned_cols=33 Identities=27% Similarity=0.257 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 011102 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404 (493)
Q Consensus 372 ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd 404 (493)
+||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 55
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.39 E-value=0.00053 Score=71.13 Aligned_cols=282 Identities=16% Similarity=0.098 Sum_probs=185.6
Q ss_pred ccCCCCHHHHHHHHhhhcc----cC-cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHH-HHHHHHHcCCC--
Q 011102 177 LDSHKDVAEVLDKCGRFLR----KG-SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLAS-TVEVLARHHEL-- 248 (493)
Q Consensus 177 ~~~~~~~~~a~~~~~~m~~----~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~-li~~~~~~g~~-- 248 (493)
+...|+.++|++.+..-.. +. .....-..|.+.|+.++|..+|..+.++ .||...|-. +..+++-...+
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHhhhccccc
Confidence 3456999999999875332 22 4456677889999999999999999865 567776554 44444333221
Q ss_pred -chhhhHHHhhccCcHH----HHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHH
Q 011102 249 -KVPFKLENFVSLASKG----VLEATAKGFVKGGNL-KLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLL 322 (493)
Q Consensus 249 -~~~~~l~~~~~~~~~~----~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~ 322 (493)
+.......|.+..... ..-.+.-.+.....+ ..+...+..+...|++ .+|+.|-.-|... .+..-..+++
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~-~K~~~i~~l~ 166 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDP-EKAAIIESLV 166 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcCh-hHHHHHHHHH
Confidence 1222223333322111 111111111121222 3455666777888854 3455555556555 6666666666
Q ss_pred HHHhhc----CC---------CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCH
Q 011102 323 DELGQR----DD---------LNLSQQDC--TAIMKVGIRLQKFGVVESLFHWFTHSGRDPT-VVMYTTLIHSRLSEKKC 386 (493)
Q Consensus 323 ~~m~~~----~g---------~~p~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~ 386 (493)
...... +. -.|+...| .-+-..|-..|++++|++..++-.+. .|+ +.-|.+--..|-+.|++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCH
Confidence 665432 11 13444444 45566788999999999999988765 676 56788888999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHHcCCHHH
Q 011102 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYD------IY--RDMIRIFMASGRLAK 458 (493)
Q Consensus 387 ~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------ty--~~li~~~~~~g~~~~ 458 (493)
.+|.+.+++.++... -|...=+-....+.++|++++|.+++......+..|-.. .| .-.-.+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999988654 466676778888999999999999999988666543322 22 345567889999999
Q ss_pred HHHHHHHHHH
Q 011102 459 CRDVCKEAEM 468 (493)
Q Consensus 459 A~~l~~~m~~ 468 (493)
|++-|....+
T Consensus 324 ALk~~~~v~k 333 (517)
T PF12569_consen 324 ALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHH
Confidence 9887666543
No 56
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.38 E-value=0.00026 Score=68.82 Aligned_cols=208 Identities=12% Similarity=0.004 Sum_probs=133.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCC-CHHHHHHHHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNL-SQQDCTAIMK 343 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p-~~~~~~~li~ 343 (493)
.|..+-..|.+.|+.++|...|++..+.. +-+...|+.+-..+... |++++|.+.|+...+. .| +...|..+..
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~Al~l---~P~~~~a~~~lg~ 140 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQA-GNFDAAYEAFDSVLEL---DPTYNYAYLNRGI 140 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 35556667788888899988888887754 23467788888888888 8999999988888753 34 3566777778
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 011102 344 VGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423 (493)
Q Consensus 344 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~ 423 (493)
++...|++++|.+.|+...+. .|+-.........+...++.++|.+.|.+.... ..|+...+ .+. ....|++++
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~~--~~~lg~~~~ 214 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NIV--EFYLGKISE 214 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HHH--HHHccCCCH
Confidence 888889999999999887754 343221222222234567889999888765432 22332221 222 223455544
Q ss_pred HHHHHHHHHHC-CCC----C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHH-HHHhh
Q 011102 424 AIRYFSKLKEA-GFC----P-TYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVE-LLQIE 485 (493)
Q Consensus 424 A~~~~~~m~~~-g~~----p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~-Ll~~~ 485 (493)
+ +.++.+.+. ... | ....|..+-..+.+.|++++|...|++..+.+ .||.+-+.. ++.+.
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRYALLELA 281 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHHHHHHHH
Confidence 4 344444421 111 1 23568888888889999999999999888654 335555443 44443
No 57
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.36 E-value=5.8e-07 Score=56.57 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC
Q 011102 442 IYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474 (493)
Q Consensus 442 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 474 (493)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 58
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.32 E-value=0.00057 Score=70.89 Aligned_cols=258 Identities=12% Similarity=0.080 Sum_probs=178.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHcCCCchhhhH--HHhhccCcHHH-HHHHHHHHHhc--
Q 011102 203 VRELGHMNLPERALQTFCWAQKQPHLFPDDR-LLASTVEVLARHHELKVPFKL--ENFVSLASKGV-LEATAKGFVKG-- 276 (493)
Q Consensus 203 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~li~~~~~~g~~~~~~~l--~~~~~~~~~~~-~~~li~~~~~~-- 276 (493)
...+...|++++|++.++.-. ...+|.. .+......+.+.|+.+.++.. ..+..-|+... |..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~---~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNE---KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhh---hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc
Confidence 345678899999999998755 3345554 456677778888886665544 22344555554 44444444222
Q ss_pred ---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHH-HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHH
Q 011102 277 ---GNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYM-LVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFG 352 (493)
Q Consensus 277 ---g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~-~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 352 (493)
...+...++|+++...- |.......+.-.+... ..+. .+...+..+..+ |+. .+|+.|-.-|....+.+
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g-~~F~~~~~~yl~~~l~K-gvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEG-DEFKERLDEYLRPQLRK-GVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCH-HHHHHHHHHHHHHHHhc-CCc---hHHHHHHHHHcChhHHH
Confidence 25677788888876643 5444444443333332 2332 334445555555 652 36777777777666677
Q ss_pred HHHHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 011102 353 VVESLFHWFTHS----G----------RDPTV--VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD-LPAYRVVIKLF 415 (493)
Q Consensus 353 ~A~~l~~~m~~~----g----------~~p~~--~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd-~~ty~~li~~~ 415 (493)
-..+++..+... | -.|+. ++|.-+-+.|-..|+.++|++.+++..++ .|+ +..|.+--..+
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Karil 238 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 777777766532 1 23444 45577788899999999999999998876 466 45777888889
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcc
Q 011102 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473 (493)
Q Consensus 416 ~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 473 (493)
-+.|++++|.+.++...+.... |...=+-.+..+.++|++++|.+++....+.+..|
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 9999999999999999877765 88888889999999999999999999988777544
No 59
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.28 E-value=1e-06 Score=55.12 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=13.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 011102 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLF 403 (493)
Q Consensus 372 ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~p 403 (493)
+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444433
No 60
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.27 E-value=1.2e-06 Score=54.86 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcc
Q 011102 441 DIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL 473 (493)
Q Consensus 441 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 473 (493)
.||+++|++|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666655
No 61
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.25 E-value=0.0002 Score=76.22 Aligned_cols=277 Identities=12% Similarity=0.041 Sum_probs=184.0
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHhCC--CCCCCHH-------HHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHH
Q 011102 198 SLSFTVRELGHMNLPERALQTFCWAQKQP--HLFPDDR-------LLASTVEVLARHHELKVPFKLENFVSLASKGVLEA 268 (493)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~--g~~pd~~-------t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~ 268 (493)
..|.+-......|.+++|...|....... ...+|.. -||. -..+-..++.+.++.+ |.... .-+-.
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl-arl~E~l~~~~~A~e~--Yk~Il--kehp~ 528 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL-ARLLEELHDTEVAEEM--YKSIL--KEHPG 528 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH-HHHHHhhhhhhHHHHH--HHHHH--HHCch
Confidence 56777777788888888888888876431 1233331 1221 1111122233333332 22110 01223
Q ss_pred HHHHHHhc-------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 011102 269 TAKGFVKG-------GNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341 (493)
Q Consensus 269 li~~~~~~-------g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~l 341 (493)
.|++|.+. +...+|...+.+..+.. .-++..++-+=.-+.+. ..|..|..-|..........+|..+.-+|
T Consensus 529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k-~~~~~a~k~f~~i~~~~~~~~D~YsliaL 606 (1018)
T KOG2002|consen 529 YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKK-SEWKPAKKKFETILKKTSTKTDAYSLIAL 606 (1018)
T ss_pred hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhh-hhhcccccHHHHHHhhhccCCchhHHHHh
Confidence 45555555 56677888887766532 22333443333355666 77888888777766554555777766666
Q ss_pred HHHHHH------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011102 342 MKVGIR------------LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409 (493)
Q Consensus 342 i~~~~~------------~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~ 409 (493)
-+.|.. .+..++|+++|.+..+.. +.|.+.=|-+--.++..|++.+|.++|.+.++... -+.-+|-
T Consensus 607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~l 684 (1018)
T KOG2002|consen 607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWL 684 (1018)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceee
Confidence 665542 345788999999877542 45788888899999999999999999999998754 2334688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 011102 410 VVIKLFVALNDISRAIRYFSKLK-EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483 (493)
Q Consensus 410 ~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~ 483 (493)
.+-+.|...|++..|.++|+.-. ...-.-+......|-.++-+.|.+.+|.+.+.........-...-||..+-
T Consensus 685 Nlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 685 NLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 89999999999999999999755 666666888899999999999999999998777666544444555665543
No 62
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.25 E-value=0.0058 Score=60.89 Aligned_cols=258 Identities=9% Similarity=-0.060 Sum_probs=154.0
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcC----CCchhhh-HHHhhc-cC-cHHHHHHHHHHHHhc
Q 011102 205 ELGHMNLPERALQTFCWAQKQPHLFP-DDRLLASTVEVLARHH----ELKVPFK-LENFVS-LA-SKGVLEATAKGFVKG 276 (493)
Q Consensus 205 ~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~li~~~~~~g----~~~~~~~-l~~~~~-~~-~~~~~~~li~~~~~~ 276 (493)
.+...|++++|.++++...+. .| |...+.. ...+...| ..+.... +..... .+ .......+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD---YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHc
Confidence 556789999999999998754 23 3334432 22222222 2222221 111111 11 222345556678899
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCH--HHHHHHHHHHHHcCCHHHH
Q 011102 277 GNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQ--QDCTAIMKVGIRLQKFGVV 354 (493)
Q Consensus 277 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~--~~~~~li~~~~~~g~~~~A 354 (493)
|++++|.+.+++..+.. +.+...+..+-..+... |++++|...+++........++. ..|-.+...+...|++++|
T Consensus 128 G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~-g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 128 GQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ-GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred CCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc-CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999865 23355667777888888 99999999999877642112333 3455678889999999999
Q ss_pred HHHHHHHHHcCC-CCCHHHH-H--HHHHHHHcCCCHHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 011102 355 ESLFHWFTHSGR-DPTVVMY-T--TLIHSRLSEKKCREALTV--VWNMEASNC--LFDLPAYRVVIKLFVALNDISRAIR 426 (493)
Q Consensus 355 ~~l~~~m~~~g~-~p~~~ty-~--~li~~~~~~g~~~~A~~l--~~~M~~~gi--~pd~~ty~~li~~~~~~g~~~~A~~ 426 (493)
..+|++...... .+..... + .++.-+...|....+.+. +........ ............++...|+.++|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 999999854322 1222211 2 334444444533322222 211111111 1111222356677889999999999
Q ss_pred HHHHHHHCCCC------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 427 YFSKLKEAGFC------P--TYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 427 ~~~~m~~~g~~------p--~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
+++.+...... . .+...-..--++...|+.++|.+++.+...
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99998742221 0 112222223335589999999999888764
No 63
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.20 E-value=0.00015 Score=69.83 Aligned_cols=150 Identities=19% Similarity=0.108 Sum_probs=85.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH----
Q 011102 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGI---- 346 (493)
Q Consensus 271 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~---- 346 (493)
..+...|++++|++++..- -+.......+..|.+. ++++.|.+.++.|.+. ..|.. ...+..++.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~-~R~dlA~k~l~~~~~~---~eD~~-l~qLa~awv~l~~ 178 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKM-NRPDLAEKELKNMQQI---DEDSI-LTQLAEAWVNLAT 178 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHT-T-HHHHHHHHHHHHCC---SCCHH-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHc-CCHHHHHHHHHHHHhc---CCcHH-HHHHHHHHHHHHh
Confidence 3455567777777766532 3455555666677777 7777777777777643 23322 222333222
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHH
Q 011102 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDI-SRAI 425 (493)
Q Consensus 347 ~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~-~~A~ 425 (493)
-..++.+|..+|+++.+ ...++..+.|.+..++...|++++|.+++.+..+..- -|..|...+|......|+. +.+.
T Consensus 179 g~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp TTTCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred CchhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHH
Confidence 22357777777777653 3456666777777777777777777777776544321 2344555566666666666 5566
Q ss_pred HHHHHHHH
Q 011102 426 RYFSKLKE 433 (493)
Q Consensus 426 ~~~~~m~~ 433 (493)
+++..++.
T Consensus 257 ~~l~qL~~ 264 (290)
T PF04733_consen 257 RYLSQLKQ 264 (290)
T ss_dssp HHHHHCHH
T ss_pred HHHHHHHH
Confidence 66666663
No 64
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.18 E-value=0.0038 Score=60.60 Aligned_cols=272 Identities=9% Similarity=-0.018 Sum_probs=198.3
Q ss_pred HHHHHHHHHh--CCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHH-Hhhcc---CcHHHHHHHHHH
Q 011102 199 LSFTVRELGH--MNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLE-NFVSL---ASKGVLEATAKG 272 (493)
Q Consensus 199 ~~~li~~~~~--~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~-~~~~~---~~~~~~~~li~~ 272 (493)
-..+..++.+ .|++..|.++...-.+. +-.| ...|..-..+--..|+.+.+.... ...+. .+.-++-+....
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~-~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarl 162 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAEH-GEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARL 162 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhc-Ccch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 3445555544 69999999999887765 5443 334555566666667755544432 22222 244467778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHH-------HHHHHHHHH
Q 011102 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQ-------DCTAIMKVG 345 (493)
Q Consensus 273 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~-------~~~~li~~~ 345 (493)
....|+.+.|..-++++.+.+- -.+.........|.+. |.|..+..++..|.+. |.--|.. +|+.+++-.
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~-g~~~~ll~~l~~L~ka-~~l~~~e~~~le~~a~~glL~q~ 239 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTP-RHPEVLRLALRAYIRL-GAWQALLAILPKLRKA-GLLSDEEAARLEQQAWEGLLQQA 239 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCc-CChHHHHHHHHHHHHh-ccHHHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999888653 3566778889999999 9999999999999998 6655533 678888877
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011102 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAI 425 (493)
Q Consensus 346 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~ 425 (493)
...+..+.-...|++...+ .+-+...-.+++.-+.+.|+.++|.++..+-.+++..|+.. ..-.+.+-++.+.=.
T Consensus 240 ~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~ 314 (400)
T COG3071 240 RDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLI 314 (400)
T ss_pred hccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHH
Confidence 7777777766677766432 13344445788889999999999999999999888877722 233455666666666
Q ss_pred HHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHh
Q 011102 426 RYFSKLK-EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484 (493)
Q Consensus 426 ~~~~~m~-~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~~ 484 (493)
+..+.-. ..+-.| ..+.+|=..|.+.+.|.+|.+.|+... ...|+..+|+.+-+.
T Consensus 315 k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~ 370 (400)
T COG3071 315 KAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADA 370 (400)
T ss_pred HHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHH
Confidence 6655544 555555 677888899999999999999999655 478999999988764
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.0018 Score=65.41 Aligned_cols=272 Identities=15% Similarity=0.037 Sum_probs=196.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhH--HHhhccC-cHHHHHHHHHHHHhcCCH
Q 011102 203 VRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKL--ENFVSLA-SKGVLEATAKGFVKGGNL 279 (493)
Q Consensus 203 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l--~~~~~~~-~~~~~~~li~~~~~~g~~ 279 (493)
..-+-..+++.+.+++++...+..++.++. +..-|..+...|+...--.+ .....-| ...+|-++--.|--.|+.
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~dpfh~~~--~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKDPFHLPC--LPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhCCCCcch--HHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCc
Confidence 345667889999999999988765666554 45556677777763321111 1112223 445788888888888999
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011102 280 KLAWKLLMVAKDGGRMLD-PSIYAKLILELGKNPDKYMLVMTLLDELGQR-DDLNLSQQDCTAIMKVGIRLQKFGVVESL 357 (493)
Q Consensus 280 ~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~l 357 (493)
.+|.+.|.+..... |. ...|-..-+.|+-. +..++|...+...-+- .|.. -+..|. ---|.+.++++.|.+.
T Consensus 329 seARry~SKat~lD--~~fgpaWl~fghsfa~e-~EhdQAmaaY~tAarl~~G~h-lP~LYl--gmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 329 SEARRYFSKATTLD--PTFGPAWLAFGHSFAGE-GEHDQAMAAYFTAARLMPGCH-LPSLYL--GMEYMRTNNLKLAEKF 402 (611)
T ss_pred HHHHHHHHHHhhcC--ccccHHHHHHhHHhhhc-chHHHHHHHHHHHHHhccCCc-chHHHH--HHHHHHhccHHHHHHH
Confidence 99999998765532 22 12466667788888 8999999887765442 2221 122232 2357788999999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011102 358 FHWFTHSGRDP-TVVMYTTLIHSRLSEKKCREALTVVWNMEAS--NCL----FDLPAYRVVIKLFVALNDISRAIRYFSK 430 (493)
Q Consensus 358 ~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~--gi~----pd~~ty~~li~~~~~~g~~~~A~~~~~~ 430 (493)
|.+-. ++.| |....+-+--.....+.+.+|...|+..... .+. .-..+++.|=++|.+.++.++|...|+.
T Consensus 403 f~~A~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 403 FKQAL--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHH--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 98765 3344 6677777777777788999999999986621 111 2445688888999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHhhhh
Q 011102 431 LKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487 (493)
Q Consensus 431 m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~~~~~ 487 (493)
-....- -|..||.++--.|...|+++.|.+.|.+.. .+.||..+-..+|+.+-+
T Consensus 481 aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 481 ALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 875443 388899999999999999999999999866 589999999999886544
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.17 E-value=0.0025 Score=61.95 Aligned_cols=223 Identities=12% Similarity=0.033 Sum_probs=138.8
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHHcCCCchhhhHHHhhc-----cCcHHHHHHHHHHHHhcCCHHH
Q 011102 209 MNLPERALQTFCWAQKQPHLFPDD--RLLASTVEVLARHHELKVPFKLENFVS-----LASKGVLEATAKGFVKGGNLKL 281 (493)
Q Consensus 209 ~g~~~~A~~l~~~m~~~~g~~pd~--~t~~~li~~~~~~g~~~~~~~l~~~~~-----~~~~~~~~~li~~~~~~g~~~~ 281 (493)
.+..+.++.-+.++.......|+. ..|...-..+.+.|+.+ +++..|.. ..+...|+.+-..|...|++++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~--~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRA--LARNDFSQALALRPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 345566666666666432333332 23444555566666633 33333332 1245678888899999999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011102 282 AWKLLMVAKDGGRMLD-PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHW 360 (493)
Q Consensus 282 A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 360 (493)
|.+.|+...+.. |+ ..+|..+-..+... |++++|.+.|+...+. .|+..........+...++.++|.+.|.+
T Consensus 117 A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~-g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 117 AYEAFDSVLELD--PTYNYAYLNRGIALYYG-GRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999999998743 54 55677777778888 9999999999988764 34433222222234456789999999976
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC---CC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 361 FTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS---NC--LF-DLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434 (493)
Q Consensus 361 m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~---gi--~p-d~~ty~~li~~~~~~g~~~~A~~~~~~m~~~ 434 (493)
.... ..|+...| .+.. ...|+..++ +.+..+.+. .+ .| ...+|..+-..+.+.|+.++|...|++..+.
T Consensus 191 ~~~~-~~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEK-LDKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhh-CCccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5432 23443332 2222 334555444 355555432 11 11 2357888888999999999999999998865
Q ss_pred CCCCCHHHHHH
Q 011102 435 GFCPTYDIYRD 445 (493)
Q Consensus 435 g~~p~~~ty~~ 445 (493)
+. ||.+-+..
T Consensus 266 ~~-~~~~e~~~ 275 (296)
T PRK11189 266 NV-YNFVEHRY 275 (296)
T ss_pred CC-chHHHHHH
Confidence 53 35555544
No 67
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=0.0011 Score=65.09 Aligned_cols=268 Identities=9% Similarity=-0.023 Sum_probs=172.9
Q ss_pred hhccCCCCHHHHHHHHhhhcccC--c-----HHHHHHHHHhC-CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC
Q 011102 175 KGLDSHKDVAEVLDKCGRFLRKG--S-----LSFTVRELGHM-NLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHH 246 (493)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~~--~-----~~~li~~~~~~-g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g 246 (493)
..+.+.|+++.|.+++.....++ + -|.-.--|.+- .++..|.+.-+.........| .....-=+.....|
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~--~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA--AALTNKGNIAFANG 504 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH--HHhhcCCceeeecC
Confidence 56778899999988887665554 1 12222233333 356677776666553311211 11111011112345
Q ss_pred CCchhhhHHHhhccC--cHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHH
Q 011102 247 ELKVPFKLENFVSLA--SKG----VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMT 320 (493)
Q Consensus 247 ~~~~~~~l~~~~~~~--~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~ 320 (493)
+ ..++...|.+-. +.. .||+=+ .+-+.|++++|++.|-++..- +.-+..+.--+-+.|-.. .+..+|++
T Consensus 505 d--~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~l-ed~aqaie 579 (840)
T KOG2003|consen 505 D--LDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELL-EDPAQAIE 579 (840)
T ss_pred c--HHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHh-hCHHHHHH
Confidence 5 455555565532 222 233322 245678899999988776431 112344444455556666 67788888
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 011102 321 LLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN 400 (493)
Q Consensus 321 l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g 400 (493)
++-+.... +.-|....+-|-+.|-+.|+-..|.+.+-+--+ -++-|..+...|-.-|....-+++|...|++.. =
T Consensus 580 ~~~q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--l 654 (840)
T KOG2003|consen 580 LLMQANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--L 654 (840)
T ss_pred HHHHhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--h
Confidence 88766543 666788888889999999999988887755432 234577788888888888888999999998754 3
Q ss_pred CCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011102 401 CLFDLPAYRVVIKLF-VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455 (493)
Q Consensus 401 i~pd~~ty~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~ 455 (493)
+.|+.+-|..+|..| .+.|++..|+++++..- ..+.-|......|+..+...|-
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h-rkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH-RKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HhCccchHHHHHHHHHhccccc
Confidence 679999999888665 56789999999998875 4466688888888888877774
No 68
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.13 E-value=2.6e-06 Score=52.02 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 011102 372 MYTTLIHSRLSEKKCREALTVVWNMEASN 400 (493)
Q Consensus 372 ty~~li~~~~~~g~~~~A~~l~~~M~~~g 400 (493)
|||+||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
No 69
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.0039 Score=61.64 Aligned_cols=150 Identities=8% Similarity=-0.047 Sum_probs=127.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 011102 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392 (493)
Q Consensus 313 ~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 392 (493)
+++++|...|+...+- -+-....|+.+-+-|....+...|.+-++.-.+-. +.|-..|-.|-++|.-.+...=|+-.
T Consensus 344 ~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyY 420 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYY 420 (559)
T ss_pred HhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHH
Confidence 7789999999988764 12345678889999999999999999999877432 56889999999999999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 393 VWNMEASNCLF-DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 393 ~~~M~~~gi~p-d~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
|++..+- +| |...|.+|=++|.+.+++++|.+.|......|-. +...|..|-+.|-+.++.++|...|+.-.+
T Consensus 421 fqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 421 FQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9987764 44 6789999999999999999999999998876643 668899999999999999999888776654
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=0.00031 Score=66.16 Aligned_cols=226 Identities=9% Similarity=-0.018 Sum_probs=149.0
Q ss_pred HHHHHHHHHcCCCchhhhHHH--hhccCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHhcCC
Q 011102 236 ASTVEVLARHHELKVPFKLEN--FVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLI-LELGKNP 312 (493)
Q Consensus 236 ~~li~~~~~~g~~~~~~~l~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li-~~~~~~~ 312 (493)
+-+-++|.+.|....++.-.. ....+-..||--|-..|-+..+.+.|+.+|.+-.+. .|-.+||-.=+ ..+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam- 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM- 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH-
Confidence 446666777776555443321 223445567777788888888888888888776653 36666664332 333344
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 011102 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392 (493)
Q Consensus 313 ~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 392 (493)
+..++|.++++...+. -..++....++-.+|.-.++.+.|++.|+.+.+.|+. +...|+.+--+|.-.+++|-++.-
T Consensus 304 ~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 6677888888777654 2345556666667777778888888888888877764 334455555566667778888877
Q ss_pred HHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 393 VWNMEASNCLFDLP--AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 393 ~~~M~~~gi~pd~~--ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
|.+....--.|+.. .|-.|=......|++..|.+.|+--....-. +...||.|--.-.+.|++++|..+++....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 77766543334432 2333434445677888888888777655432 667788887777899999999999888765
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.00031 Score=66.15 Aligned_cols=220 Identities=13% Similarity=0.016 Sum_probs=89.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhc----cCcHHHH-HHHHHHHHhcC
Q 011102 203 VRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVS----LASKGVL-EATAKGFVKGG 277 (493)
Q Consensus 203 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~----~~~~~~~-~~li~~~~~~g 277 (493)
-+.|.+.|.+.+|...|+.-.++ .|-..||..|-++|.+..+ -..++..|.+ .|-.+|| .-+...+-..+
T Consensus 230 gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQ--P~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 230 GKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQ--PERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhcc--HHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 33444455555555555444433 2223344444444444444 2223322222 2222222 22223333344
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011102 278 NLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESL 357 (493)
Q Consensus 278 ~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 357 (493)
+.++|.+++++..+.. ..++....++-.+|.-. ++.+-|+..+..+.+. |+ -+...|+.+--+|.-.+++|-++.-
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~-~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYD-NNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccC-CChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 4455555554444321 11222333333344444 4445555555554444 33 2333344443344444445555444
Q ss_pred HHHHHHcCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 358 FHWFTHSGRDPTV--VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 358 ~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
|..-...--.|+. ..|-.|-......|++.-|.+-|+-.....- -+...+|.|--.-.+.|++++|..+++..+
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 4443332222222 2233344444444555555555544333221 123344444444444555555555544443
No 72
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.0006 Score=71.33 Aligned_cols=253 Identities=10% Similarity=0.027 Sum_probs=151.9
Q ss_pred hhccCCCCHHHHHHHHhhhcccCcHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhH
Q 011102 175 KGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKL 254 (493)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l 254 (493)
+.|...|+.++|.+...-+.....|..+-+.|.+..+.+-|.-.+-.|....| ++++
T Consensus 736 SfyvtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRg-----------------------aRAl 792 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARG-----------------------ARAL 792 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhh-----------------------HHHH
Confidence 45566677777777777776677777777777777777777766666653312 1122
Q ss_pred HHhhccCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC
Q 011102 255 ENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS 334 (493)
Q Consensus 255 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~ 334 (493)
..-.+.++ .+=.-+.-.-...|.+++|+.+|++-++. . |++-+.+..|.|++|.++-+.=.+ +..
T Consensus 793 R~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------D-LlNKlyQs~g~w~eA~eiAE~~DR---iHL- 857 (1416)
T KOG3617|consen 793 RRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------D-LLNKLYQSQGMWSEAFEIAETKDR---IHL- 857 (1416)
T ss_pred HHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------H-HHHHHHHhcccHHHHHHHHhhccc---eeh-
Confidence 11111111 00001111224567888888888877663 2 344444444888888877543322 222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH-----------HHHc--------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 011102 335 QQDCTAIMKVGIRLQKFGVVESLFHW-----------FTHS--------GRDPTVVMYTTLIHSRLSEKKCREALTVVWN 395 (493)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~l~~~-----------m~~~--------g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 395 (493)
..||-.--.-+-..++++.|++.|++ +.+. .-..|...|..--.-+-..|+++.|+.++..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 22333333333344555555544442 2211 0112333344444445567888888888876
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCH
Q 011102 396 MEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475 (493)
Q Consensus 396 M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 475 (493)
.+. |-++++..|-.|+.++|-++-++-. |....-.|...|-..|++.+|...|-+..
T Consensus 938 A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq-------- 994 (1416)
T KOG3617|consen 938 AKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ-------- 994 (1416)
T ss_pred hhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH--------
Confidence 654 6778888888999999998876642 55556678888999999999999888754
Q ss_pred HHHHHHHHhhhhcc
Q 011102 476 QTVVELLQIEKESR 489 (493)
Q Consensus 476 ~t~~~Ll~~~~~~r 489 (493)
+|+.-|++||++.
T Consensus 995 -afsnAIRlcKEnd 1007 (1416)
T KOG3617|consen 995 -AFSNAIRLCKEND 1007 (1416)
T ss_pred -HHHHHHHHHHhcC
Confidence 6777888888764
No 73
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.03 E-value=4.8e-06 Score=50.79 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 011102 442 IYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471 (493)
Q Consensus 442 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 471 (493)
||++||++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 556666666666666666666666655553
No 74
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.02 E-value=0.00013 Score=58.21 Aligned_cols=70 Identities=9% Similarity=0.195 Sum_probs=30.7
Q ss_pred cCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011102 382 SEKKCREALTVVWNMEASNC-LFDLPAYRVVIKLFVALN--------DISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451 (493)
Q Consensus 382 ~~g~~~~A~~l~~~M~~~gi-~pd~~ty~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 451 (493)
..+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+++.|...+++|+..||+.++..+.
T Consensus 37 ~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 37 ENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred hhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 33444444444444444444 444444444444433322 22333444445554445555555555554443
No 75
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.01 E-value=0.0012 Score=61.84 Aligned_cols=185 Identities=11% Similarity=0.017 Sum_probs=120.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCH-H
Q 011102 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDP----SIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQ-Q 336 (493)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~-~ 336 (493)
....+-.+...+.+.|++++|...|++..... |+. .++..+-..+.+. |++++|...++++.+...-.+.. .
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKS-GDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHCcCCCchHH
Confidence 44567777788889999999999999887743 432 3556677788888 89999999999987652112221 1
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH
Q 011102 337 DCTAIMKVGIRL--------QKFGVVESLFHWFTHSGRDPTV-VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPA 407 (493)
Q Consensus 337 ~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~t 407 (493)
.+..+-.++.+. |+.++|.+.|+.+.+. .|+. ..+..+..... .... .. ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~------~~--------~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR------LA--------GK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH------HH--------HH
Confidence 333344444443 6678888888887654 3432 22222111100 0000 00 01
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 408 YRVVIKLFVALNDISRAIRYFSKLKEAG--FCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 408 y~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
.-.+-..|.+.|+.++|...++...+.. -......+..+..++.+.|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1244456889999999999999988542 1224578889999999999999999999888754
No 76
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.98 E-value=0.00015 Score=57.73 Aligned_cols=80 Identities=15% Similarity=0.270 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 011102 339 TAIMKVGIRLQKFGVVESLFHWFTHSGR-DPTVVMYTTLIHSRLSEK--------KCREALTVVWNMEASNCLFDLPAYR 409 (493)
Q Consensus 339 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~ty~~li~~~~~~g--------~~~~A~~l~~~M~~~gi~pd~~ty~ 409 (493)
...|..+...+++.....+|+.+++.|+ .|++.+||.++.+.++.. ++-+++.+++.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4556666677888888889999988888 889999998888887753 3456788899999999999999999
Q ss_pred HHHHHHHHc
Q 011102 410 VVIKLFVAL 418 (493)
Q Consensus 410 ~li~~~~~~ 418 (493)
.+|..+.+.
T Consensus 109 ivl~~Llkg 117 (120)
T PF08579_consen 109 IVLGSLLKG 117 (120)
T ss_pred HHHHHHHHh
Confidence 999887653
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.96 E-value=0.014 Score=58.24 Aligned_cols=262 Identities=10% Similarity=-0.103 Sum_probs=148.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHH-HHHHHHHcCCCchhhhHHHhhc----cC-cHHHHHH---HHH
Q 011102 201 FTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLAS-TVEVLARHHELKVPFKLENFVS----LA-SKGVLEA---TAK 271 (493)
Q Consensus 201 ~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~-li~~~~~~g~~~~~~~l~~~~~----~~-~~~~~~~---li~ 271 (493)
.+-..+...|+.+.|...+..........++..-... -...+...|+++ +++..+.. .| +...++. ...
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~--~A~~~~~~~l~~~P~~~~a~~~~~~~~~ 88 (355)
T cd05804 11 AAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLP--KALALLEQLLDDYPRDLLALKLHLGAFG 88 (355)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHCCCcHHHHHHhHHHHH
Confidence 3344555567777766666655433122233322211 122234455543 33333322 23 3334442 111
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC
Q 011102 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPS-IYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQK 350 (493)
Q Consensus 272 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 350 (493)
.....+..+.+.+.++. .....|+.. ....+-..+... |++++|.+.+++..+. -..+...+..+-..|...|+
T Consensus 89 ~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~-G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 89 LGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEA-GQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred hcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCC
Confidence 12234555666666654 222334433 333444566777 9999999999998875 23446677888899999999
Q ss_pred HHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHHcCCHHH
Q 011102 351 FGVVESLFHWFTHSGR-DPTV--VMYTTLIHSRLSEKKCREALTVVWNMEASNC-LFDLPAY-R--VVIKLFVALNDISR 423 (493)
Q Consensus 351 ~~~A~~l~~~m~~~g~-~p~~--~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi-~pd~~ty-~--~li~~~~~~g~~~~ 423 (493)
+++|...+++.....- .|+. ..|..+...+...|+.++|.+++++...... .+..... + .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 9999999998775421 2333 3466788899999999999999999854322 2222221 2 33444444554444
Q ss_pred HHHH--HHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 424 AIRY--FSKLKEAGF--CPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 424 A~~~--~~~m~~~g~--~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
+.++ ......... ............++...|+.++|..+++.+...
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4333 211111111 111222235677778899999999999998763
No 78
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=0.024 Score=56.38 Aligned_cols=282 Identities=10% Similarity=0.009 Sum_probs=150.5
Q ss_pred cCCCCHHHHHHHHhhhc----ccCcHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhh
Q 011102 178 DSHKDVAEVLDKCGRFL----RKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFK 253 (493)
Q Consensus 178 ~~~~~~~~a~~~~~~m~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~ 253 (493)
-..|.+..|.++|++.. +...|.+.|+-=.+-..++.|..+++... -+.|++.+|.....-=-+.|....+..
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV---~~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFV---LVHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh---eecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 33578888888888653 34599999998888899999999999887 456888887666555555554332221
Q ss_pred HH-------------------------------------Hh--hccC---------------------------------
Q 011102 254 LE-------------------------------------NF--VSLA--------------------------------- 261 (493)
Q Consensus 254 l~-------------------------------------~~--~~~~--------------------------------- 261 (493)
+. .| +.+|
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 10 00 0011
Q ss_pred ------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHH----H-H---HhcCCCCHHHHH
Q 011102 262 ------------SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPS--IYAKLI----L-E---LGKNPDKYMLVM 319 (493)
Q Consensus 262 ------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~li----~-~---~~~~~~~~~~a~ 319 (493)
|-.+|--.+..--..|+.+...++|+..... ++|-.. -|.--| + + =... .+++.+.
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~-ed~ertr 386 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEA-EDVERTR 386 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHH
Confidence 0012222333333334444444444444432 222100 011000 0 0 0112 3444444
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 011102 320 TLLDELGQRDDLNLSQQDCTAIMKVGI----RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN 395 (493)
Q Consensus 320 ~l~~~m~~~~g~~p~~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 395 (493)
++++...+- +.....||.-+--+|+ +..++..|.+++..-. |..|-.-+|-.-|.-=.+.++++....+++.
T Consensus 387 ~vyq~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 387 QVYQACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 555444432 3334444443333332 3455555555555433 4456666666666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 396 MEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG-FCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 396 M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
..+-+- -|..+|.-.-..=-..|+.+.|..+|+-..+.. +.-....|-+.|+-=...|.+++|..+++.+.+.
T Consensus 463 fle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 463 FLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 655432 244555555555556677777777776665432 2223344555555556677777777777777654
No 79
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.94 E-value=0.00014 Score=72.93 Aligned_cols=123 Identities=12% Similarity=0.018 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011102 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHS--GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAY 408 (493)
Q Consensus 331 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty 408 (493)
...+.....++++.+....+++++..++.+.... ...--..|..++|+.|...|..++|+.++..=...||-||..||
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 4456667777777777777777777777777654 22122233457888888888888888888777777888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 011102 409 RVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453 (493)
Q Consensus 409 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 453 (493)
|.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888887777666666777777666666555
No 80
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.91 E-value=0.00018 Score=72.16 Aligned_cols=125 Identities=11% Similarity=0.060 Sum_probs=84.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 011102 293 GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDD-LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVV 371 (493)
Q Consensus 293 g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 371 (493)
+...+.+....+++.+... .+++++..++......+. ...-..|..++|..|.+.|..++++++++.=...|+-||..
T Consensus 61 ~~~vS~~dld~fvn~~~~~-~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESK-DDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred CCCCcHHHHHHHHhhcCCH-hHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 3445666666677777766 667777777776654421 11223344577777777777777777777777777777777
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 011102 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL 418 (493)
Q Consensus 372 ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~ 418 (493)
|||.||+.+.+.|++..|.++..+|...+...+..|+.--+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777777776666666666666666666554
No 81
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.89 E-value=0.0044 Score=57.89 Aligned_cols=180 Identities=10% Similarity=-0.066 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHHHcCCCchhhhHHHhhc----cCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--H
Q 011102 231 DDRLLASTVEVLARHHELKVPFKLENFVS----LAS----KGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPS--I 300 (493)
Q Consensus 231 d~~t~~~li~~~~~~g~~~~~~~l~~~~~----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t 300 (493)
....+-.....+.+.|+++.+ +..+.. .++ ..++..+...|.+.|++++|...++++.+..-..... +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A--~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEA--IKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 445667777778888885544 333432 222 2367788899999999999999999998754211111 3
Q ss_pred HHHHHHHHhcC-------CCCHHHHHHHHHHHhhcCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 011102 301 YAKLILELGKN-------PDKYMLVMTLLDELGQRDDLNLSQQ-DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVM 372 (493)
Q Consensus 301 ~~~li~~~~~~-------~~~~~~a~~l~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 372 (493)
+..+-..+.+. .|+.++|.+.|+.+... .|+.. .+..+... .. ... ... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~-~~---~~~------~~~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM-DY---LRN------RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH-HH---HHH------HHH--------HH
Confidence 33333334321 15688899999998765 24432 22222111 11 000 000 01
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 373 YTTLIHSRLSEKKCREALTVVWNMEASN--CLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433 (493)
Q Consensus 373 y~~li~~~~~~g~~~~A~~l~~~M~~~g--i~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 433 (493)
.-.+-..|.+.|+.++|...+.+..+.. -......+..+..++.+.|+.++|..+++.+..
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1245566888899999999888877652 112346788888889999999999988888764
No 82
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.89 E-value=0.0012 Score=63.79 Aligned_cols=215 Identities=14% Similarity=0.048 Sum_probs=134.2
Q ss_pred ccCCCCHHHHHHHHhhhcccCc-HHHHHHHHHhC-CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhH
Q 011102 177 LDSHKDVAEVLDKCGRFLRKGS-LSFTVRELGHM-NLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKL 254 (493)
Q Consensus 177 ~~~~~~~~~a~~~~~~m~~~~~-~~~li~~~~~~-g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l 254 (493)
+-..|....++........... --.++..|... .+-+.++.-+.+.... ....+.. +..++.|..-...-+..+++
T Consensus 45 ~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~-~~~~~~~-~~~~~~A~i~~~~~~~~~AL 122 (290)
T PF04733_consen 45 YIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLAD-QAGESNE-IVQLLAATILFHEGDYEEAL 122 (290)
T ss_dssp HHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCT-S---CHH-HHHHHHHHHHCCCCHHHHHH
T ss_pred HHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHh-ccccccH-HHHHHHHHHHHHcCCHHHHH
Confidence 3334556666555543333321 11233444444 3445555555444333 2222222 23344444443333466777
Q ss_pred HHhhccCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh---cCCCCHHHHHHHHHHHhhcCCC
Q 011102 255 ENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELG---KNPDKYMLVMTLLDELGQRDDL 331 (493)
Q Consensus 255 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~---~~~~~~~~a~~l~~~m~~~~g~ 331 (493)
.....-.+.......+..|.+.++++.|.+.++.|.+.. .|... ..+..++. ..++.+.+|.-+|+++... .
T Consensus 123 ~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l-~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~ 197 (290)
T PF04733_consen 123 KLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSIL-TQLAEAWVNLATGGEKYQDAFYIFEELSDK--F 197 (290)
T ss_dssp CCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHH-HHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S
T ss_pred HHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHH-HHHHHHHHHHHhCchhHHHHHHHHHHHHhc--c
Confidence 666666667777889999999999999999999999864 45443 33444332 2225799999999999775 5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHC
Q 011102 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC-REALTVVWNMEAS 399 (493)
Q Consensus 332 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~-~~A~~l~~~M~~~ 399 (493)
.+++.+.|.+..++...|++++|.+++.+..+.. +-|..+...+|......|+. +.+.+.+.+++..
T Consensus 198 ~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 198 GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp --SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 6889999999999999999999999999865432 33455666677777777777 7788899998864
No 83
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.88 E-value=0.0033 Score=69.67 Aligned_cols=218 Identities=13% Similarity=0.036 Sum_probs=167.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHH
Q 011102 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDG-GRML---DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQD 337 (493)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p---d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~ 337 (493)
+...|-.-|......++.++|.+++++.... ++.- -.-.|.++++.-... |.-+...++|++..+. . -.-.+
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y-G~eesl~kVFeRAcqy--c-d~~~V 1532 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY-GTEESLKKVFERACQY--C-DAYTV 1532 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh-CcHHHHHHHHHHHHHh--c-chHHH
Confidence 3446888888899999999999999988753 1111 123577777766666 6678899999998775 2 22457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 011102 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD---LPAYRVVIKL 414 (493)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd---~~ty~~li~~ 414 (493)
|..|...|.+.++.++|-++|+.|.++=- -....|...+..+.+..+-+.|..++.+..+. .|- +....-.+..
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 88999999999999999999999975422 46678999999999999999999999987653 344 2334555566
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHH--HHHHHHHhhhh
Q 011102 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ--TVVELLQIEKE 487 (493)
Q Consensus 415 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~Ll~~~~~ 487 (493)
-.+.|+.+.+..+|+.....--+ -...|+..|+.-.+.|+.+.+..+|++....++.|-.. -|..-|..++.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 67899999999999998854322 45679999999999999999999999999999887543 45666665443
No 84
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.85 E-value=0.00029 Score=63.10 Aligned_cols=105 Identities=10% Similarity=0.134 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 011102 332 NLSQQDCTAIMKVGIRL-----QKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP 406 (493)
Q Consensus 332 ~p~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ 406 (493)
.-|..+|..+|+.|.+. |.++-....+..|.+-|+..|..+|+.||+.+=+. .+- |. .
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg-~fv---------------p~-n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKG-KFV---------------PR-N 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCC-Ccc---------------cc-c
Confidence 45777777777777654 56777777777777777777777777777776652 211 11 0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011102 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455 (493)
Q Consensus 407 ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~ 455 (493)
.+.++..-|- .+-+-|.++++.|...|+.||..|+..|++.+++.+.
T Consensus 107 ~fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111111111 1335567777777777777777777777777766554
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.82 E-value=0.008 Score=54.35 Aligned_cols=208 Identities=12% Similarity=-0.074 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 011102 264 GVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDP-SIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIM 342 (493)
Q Consensus 264 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li 342 (493)
.+.--|--+|.+.|+...|..-+++..+.. |+. .+|..+-..|-+. |..+.|.+-|+..... -.-+..+.|..-
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~-Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG 110 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKL-GENDLADESYRKALSL--APNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHc-CChhhHHHHHHHHHhc--CCCccchhhhhh
Confidence 357778889999999999999999999864 544 4677777778888 9999999999987654 122445677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011102 343 KVGIRLQKFGVVESLFHWFTHSGRDP-TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDI 421 (493)
Q Consensus 343 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~ 421 (493)
.-+|..|++++|...|++-...-.-+ -..||..+.-+..+.|+.+.|.+.|++-.+..-. ...+.-.+-....+.|++
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDY 189 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccc
Confidence 88899999999999998876532111 2467788888888999999999999997765321 234567777888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHH
Q 011102 422 SRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVE 480 (493)
Q Consensus 422 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 480 (493)
-.|..+++.....+. ++..+.-..|..--+.|+.+.|.+.=..+.+ .-|...-|..
T Consensus 190 ~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q~ 245 (250)
T COG3063 190 APARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQT 245 (250)
T ss_pred hHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHh
Confidence 999999999886666 8888888888888899999888877555544 3455544443
No 86
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.80 E-value=0.052 Score=56.03 Aligned_cols=197 Identities=11% Similarity=0.109 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcC---------CCC
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLD---PSIYAKLILELGKNPDKYMLVMTLLDELGQRD---------DLN 332 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~---------g~~ 332 (493)
.|..+.+.|-..|+++.|..+|++..+...+-- ..+|-..-..=.+. .+++.|+++.+.....+ |-.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh-~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH-ENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh-hhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 377788888889999999999998876543211 12232222333344 56777777766554321 111
Q ss_pred C-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 011102 333 L-------SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRD-PTVVM-YTTLIHSRLSEKKCREALTVVWNMEASNCLF 403 (493)
Q Consensus 333 p-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t-y~~li~~~~~~g~~~~A~~l~~~M~~~gi~p 403 (493)
| +...|+..++---..|-++....+|+.+.+..+. |-.+. |..++ -.+.-++++.+++++=...=--|
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfL---Eeh~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFL---EEHKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHH---HhhHHHHHHHHHHHcCCccCCCc
Confidence 1 2224555555555667788888888887754432 22211 11111 22333555555554311111113
Q ss_pred CH-HHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHH
Q 011102 404 DL-PAYRVVIKLFVA---LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF--MASGRLAKCRDVCKEA 466 (493)
Q Consensus 404 d~-~ty~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~--~~~g~~~~A~~l~~~m 466 (493)
++ ..|++-+.-+.+ .-+++.|..+|+...+ |+.|...-+--|+-+= -+.|....|+.++++.
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33 234444433332 2256666666666665 5544332222222111 1335555666666554
No 87
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.73 E-value=0.00047 Score=61.82 Aligned_cols=105 Identities=12% Similarity=0.089 Sum_probs=72.3
Q ss_pred cCcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC
Q 011102 260 LASKGVLEATAKGFVK-----GGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS 334 (493)
Q Consensus 260 ~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~ 334 (493)
..+..+|..+|+.|.+ .|.++-....+..|.+-|+.-|..+|+.||+.+=+. .-. -..+|+.+-..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg-~fv--p~n~fQ~~F~h------ 114 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKG-KFV--PRNFFQAEFMH------ 114 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCC-Ccc--cccHHHHHhcc------
Confidence 3456666677777654 488999999999999999999999999999998764 211 12222222111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 011102 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK 385 (493)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 385 (493)
.-.+.+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 115 ------------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 ------------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 112346677777777777777777777777777776664
No 88
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.72 E-value=0.083 Score=54.74 Aligned_cols=263 Identities=14% Similarity=0.039 Sum_probs=157.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHH--HhhccC-cHHHHHHHHHHHHh
Q 011102 199 LSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLE--NFVSLA-SKGVLEATAKGFVK 275 (493)
Q Consensus 199 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~--~~~~~~-~~~~~~~li~~~~~ 275 (493)
|......=-..|..++-..+|+....+ +.-....|-...+-.-..|++..+..+. .|...+ +..+|-+-+..-..
T Consensus 553 Wlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~e 630 (913)
T KOG0495|consen 553 WLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFE 630 (913)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc
Confidence 333333333344555555555555432 2223333444444444556544444432 233333 55688888888889
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcC--------------------------
Q 011102 276 GGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD-------------------------- 329 (493)
Q Consensus 276 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~-------------------------- 329 (493)
+.+++.|..+|.+.... .|+...|..-+..---. +..++|.+++++..+..
T Consensus 631 n~e~eraR~llakar~~--sgTeRv~mKs~~~er~l-d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~a 707 (913)
T KOG0495|consen 631 NDELERARDLLAKARSI--SGTERVWMKSANLERYL-DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREA 707 (913)
T ss_pred cccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHh-hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999887774 47777776555544444 67788888887766541
Q ss_pred ---C---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----
Q 011102 330 ---D---LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS---- 399 (493)
Q Consensus 330 ---g---~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~---- 399 (493)
| +.-..-.|-.|-+.=-+.|.+-.|..+|+.-.-++ +-|..-|-..|+.-.+.|..+.|..++.+..+.
T Consensus 708 Y~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 708 YLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred HHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 0 01111223333333345566666666666654332 446677888888888888888888777665431
Q ss_pred -------------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 011102 400 -------------------------NCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454 (493)
Q Consensus 400 -------------------------gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 454 (493)
.+.-|....-++-..|....+++.|.+.|.+-.+.+- -+..+|.-+..-+.+.|
T Consensus 787 g~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 787 GLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHG 865 (913)
T ss_pred chhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhC
Confidence 1222333344444556666777888888887775542 25567777888888888
Q ss_pred CHHHHHHHHHHHHH
Q 011102 455 RLAKCRDVCKEAEM 468 (493)
Q Consensus 455 ~~~~A~~l~~~m~~ 468 (493)
.-++-.+++.....
T Consensus 866 ~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 866 TEEDQKEVLKKCET 879 (913)
T ss_pred CHHHHHHHHHHHhc
Confidence 77777777766554
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.72 E-value=0.035 Score=50.34 Aligned_cols=164 Identities=13% Similarity=0.026 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 011102 263 KGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRML-DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341 (493)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~l 341 (493)
..+|..+...|-+.|+.+.|.+-|++..+.. | +..+.|.-=.-+|.. |++++|.+.|++....+...--..+|..+
T Consensus 69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC~q-g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~ 145 (250)
T COG3063 69 YLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLCAQ-GRPEEAMQQFERALADPAYGEPSDTLENL 145 (250)
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHHhC-CChHHHHHHHHHHHhCCCCCCcchhhhhh
Confidence 3456666666666666666666666555532 2 223344444445555 56666666666655554443344455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011102 342 MKVGIRLQKFGVVESLFHWFTHSGRDPT-VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALND 420 (493)
Q Consensus 342 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~ 420 (493)
.-+..+.|+.+.|...|+.-.+. .|+ ..+.-.+-....+.|+...|...++.....+. ++..+.-..|..--..|+
T Consensus 146 G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd 222 (250)
T COG3063 146 GLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGD 222 (250)
T ss_pred HHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhcc
Confidence 55555666666666666555433 221 23344555555566666666666665555444 555555555555555666
Q ss_pred HHHHHHHHHHHH
Q 011102 421 ISRAIRYFSKLK 432 (493)
Q Consensus 421 ~~~A~~~~~~m~ 432 (493)
.+.|-++=..+.
T Consensus 223 ~~~a~~Y~~qL~ 234 (250)
T COG3063 223 RAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHHHHHH
Confidence 555555444443
No 90
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.71 E-value=0.086 Score=54.53 Aligned_cols=309 Identities=15% Similarity=0.172 Sum_probs=168.7
Q ss_pred hhccCCCCHHHHHHHHhhhccc-------CcHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCC
Q 011102 175 KGLDSHKDVAEVLDKCGRFLRK-------GSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHE 247 (493)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~ 247 (493)
..+-+.+++......|++.+.. ..|...|.-....|-++-++.+++...+- .|.. -+-.|.-+++.++
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~---~P~~--~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV---APEA--REEYIEYLAKSDR 184 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc---CHHH--HHHHHHHHHhccc
Confidence 3344566777766666644332 37777777777777777777777766533 3332 3555555666555
Q ss_pred CchhhhH-HH----------------------h---hc--------------------cCcH--HHHHHHHHHHHhcCCH
Q 011102 248 LKVPFKL-EN----------------------F---VS--------------------LASK--GVLEATAKGFVKGGNL 279 (493)
Q Consensus 248 ~~~~~~l-~~----------------------~---~~--------------------~~~~--~~~~~li~~~~~~g~~ 279 (493)
++.+... .. + .. ..|. ..|++|.+.|.+.|.+
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhh
Confidence 4322211 00 0 00 0111 2599999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCC---------------C------CHHHHHHHHHHHhhcC---------
Q 011102 280 KLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP---------------D------KYMLVMTLLDELGQRD--------- 329 (493)
Q Consensus 280 ~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~---------------~------~~~~a~~l~~~m~~~~--------- 329 (493)
+.|..+|++..+.- .+..-|+.+.++|++.. + +++-...-|+.+....
T Consensus 265 ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 265 EKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred HHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 99999999877643 23333444444443210 0 1122222233222210
Q ss_pred ---------------------------------CCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-
Q 011102 330 ---------------------------------DLNLS------QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT- 369 (493)
Q Consensus 330 ---------------------------------g~~p~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~- 369 (493)
.+.|- ...|..+-+-|-..|+++.|..+|++-.+-..+--
T Consensus 343 RQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred hcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 01111 11356777788889999999999998764332211
Q ss_pred --HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC----------CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011102 370 --VVMYTTLIHSRLSEKKCREALTVVWNMEASNC----------LF-------DLPAYRVVIKLFVALNDISRAIRYFSK 430 (493)
Q Consensus 370 --~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi----------~p-------d~~ty~~li~~~~~~g~~~~A~~~~~~ 430 (493)
..+|..--..=.++.+++.|+++++.....-- .| +...|+..++.--..|-++....+++.
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 23344434444556677778877766532110 11 112233333333334444444444444
Q ss_pred HH------------------------------HCCCC----CCH-HHHHHHHHHHHH-c--CCHHHHHHHHHHHHHCCCc
Q 011102 431 LK------------------------------EAGFC----PTY-DIYRDMIRIFMA-S--GRLAKCRDVCKEAEMAGFK 472 (493)
Q Consensus 431 m~------------------------------~~g~~----p~~-~ty~~li~~~~~-~--g~~~~A~~l~~~m~~~g~~ 472 (493)
+. ++|+. |++ ..|++.+.-+.+ - -..+.|..+|++..+ |++
T Consensus 503 iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cp 581 (835)
T KOG2047|consen 503 IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCP 581 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCC
Confidence 43 24442 333 456666555543 2 368999999999998 888
Q ss_pred cCHHHHHHHHHhhhhccCC
Q 011102 473 LDKQTVVELLQIEKESRIG 491 (493)
Q Consensus 473 pd~~t~~~Ll~~~~~~r~g 491 (493)
|...-+-.|+-+--+.+.|
T Consensus 582 p~~aKtiyLlYA~lEEe~G 600 (835)
T KOG2047|consen 582 PEHAKTIYLLYAKLEEEHG 600 (835)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 8777666666543344444
No 91
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.70 E-value=0.061 Score=58.04 Aligned_cols=200 Identities=12% Similarity=0.056 Sum_probs=144.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHH--
Q 011102 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRML--DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQD-- 337 (493)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~-- 337 (493)
+.++.+.|-+.|.-.|+++.++.+...+...-..- -...|--+-.+|-.. |++++|...|.+..+. .+|..+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~-Gd~ekA~~yY~~s~k~---~~d~~~l~ 344 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ-GDFEKAFKYYMESLKA---DNDNFVLP 344 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHcc---CCCCcccc
Confidence 56678999999999999999999999888753111 122355677888888 9999999999887654 344433
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011102 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT-VVMYTTLIHSRLSEK----KCREALTVVWNMEASNCLFDLPAYRVVI 412 (493)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g----~~~~A~~l~~~M~~~gi~pd~~ty~~li 412 (493)
+--+-.+|.+.|+++.|...|+...+. .|| ..+.-+|-.-|+..+ ..++|..++.+-.+.- .-|...|-.+-
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~la 421 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELA 421 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHH
Confidence 446788999999999999999998755 444 455566666666654 4566666666654432 23556666666
Q ss_pred HHHHHcCCHHHHHHHHH----HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 413 KLFVALNDISRAIRYFS----KLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 413 ~~~~~~g~~~~A~~~~~----~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
..+-... ...++.+|. .|...+-.+-....|.+-......|.+++|.+.|+.....
T Consensus 422 ql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 422 QLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 6655544 434466655 3445666678888999999999999999999999998765
No 92
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.68 E-value=0.027 Score=62.80 Aligned_cols=199 Identities=8% Similarity=-0.084 Sum_probs=93.7
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHH-----HHHHHHHHHHHcCCCchhhhHHHhhc----cCcHHHHHH
Q 011102 198 SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDR-----LLASTVEVLARHHELKVPFKLENFVS----LASKGVLEA 268 (493)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-----t~~~li~~~~~~g~~~~~~~l~~~~~----~~~~~~~~~ 268 (493)
.|-.-|....+.++.++|.+++++.... +.+... .|.++++.-.-.|. .+.....|.+ +....+|..
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~t--IN~REeeEKLNiWiA~lNlEn~yG~--eesl~kVFeRAcqycd~~~V~~~ 1535 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKT--INFREEEEKLNIWIAYLNLENAYGT--EESLKKVFERACQYCDAYTVHLK 1535 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhh--CCcchhHHHHHHHHHHHhHHHhhCc--HHHHHHHHHHHHHhcchHHHHHH
Confidence 4555566777777777777777777642 322111 23444433333332 1111122222 112234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc
Q 011102 269 TAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRL 348 (493)
Q Consensus 269 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~ 348 (493)
|...|.+.+.+++|-++|+.|.+. +.-....|......+.+. ++-+.|.+++.+..+.---+--+....-....-.+.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~-ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQ-NEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcc-cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 555555555555555555555543 113444555555555555 555555555555433200000122233333334455
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 011102 349 QKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF 403 (493)
Q Consensus 349 g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~p 403 (493)
|+.+++..+|+.....- +.-...|+..|+.-.++|+.+.+.++|++....++.|
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 55555555555544321 1123345555555555555555555555555554443
No 93
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.013 Score=63.07 Aligned_cols=159 Identities=10% Similarity=0.082 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCC
Q 011102 234 LLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPD 313 (493)
Q Consensus 234 t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~ 313 (493)
.|+.+..|-.+.|. ..+++..|..-.|...|--+|+...+.|.+++-.+.+...++..-.|...+ .||-+|++. +
T Consensus 1106 vWsqlakAQL~~~~--v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt-~ 1180 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGL--VKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKT-N 1180 (1666)
T ss_pred HHHHHHHHHHhcCc--hHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHh-c
Confidence 44555555444444 344455555555555555555555555555555555555554444444332 455555555 5
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 011102 314 KYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVV 393 (493)
Q Consensus 314 ~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 393 (493)
+..+..+++ ..||......+-+-|...|.++.|.-+|.. +.-|.-|-..+...|++..|.+--
T Consensus 1181 rl~elE~fi--------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1181 RLTELEEFI--------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred hHHHHHHHh--------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 544433332 224444444455555555555555544442 233555555555555555555443
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011102 394 WNMEASNCLFDLPAYRVVIKLFVALND 420 (493)
Q Consensus 394 ~~M~~~gi~pd~~ty~~li~~~~~~g~ 420 (493)
++. -+..||--+-.+|...+.
T Consensus 1244 RKA------ns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1244 RKA------NSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred hhc------cchhHHHHHHHHHhchhh
Confidence 322 234455555444444443
No 94
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.64 E-value=0.0028 Score=65.68 Aligned_cols=139 Identities=17% Similarity=0.139 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKV 344 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~ 344 (493)
-|.-+.+.|+..|+++.|.++|-+.- .++-.|..|.+. |+|++|.++-.+.. |-......|-+--.-
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~-~kw~da~kla~e~~---~~e~t~~~yiakaed 833 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKA-GKWEDAFKLAEECH---GPEATISLYIAKAED 833 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcc-ccHHHHHHHHHHhc---CchhHHHHHHHhHHh
Confidence 37777788888888888888876432 356667788888 88888887766542 334455566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 011102 345 GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424 (493)
Q Consensus 345 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A 424 (493)
+-+.|++.+|+++|-.+. .|+. -|..|-+.|..++.+++..+-.-..+ ..|.-.+-.-|-..|++..|
T Consensus 834 ldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaa 901 (1636)
T KOG3616|consen 834 LDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAA 901 (1636)
T ss_pred HHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHH
Confidence 667777777777776655 5654 35667777777777776654321111 12333333444445555555
Q ss_pred HHHH
Q 011102 425 IRYF 428 (493)
Q Consensus 425 ~~~~ 428 (493)
..-|
T Consensus 902 e~~f 905 (1636)
T KOG3616|consen 902 EEHF 905 (1636)
T ss_pred HHHH
Confidence 5444
No 95
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0054 Score=61.08 Aligned_cols=191 Identities=11% Similarity=0.071 Sum_probs=117.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHH
Q 011102 269 TAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNL-SQQDCTAIMKVGIR 347 (493)
Q Consensus 269 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p-~~~~~~~li~~~~~ 347 (493)
+-..|....+.++.++.|++..+..-. ++.+|-.--..+.-. +++++|..=|++...- .| +...|-.+--+..|
T Consensus 366 ~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL-~q~e~A~aDF~Kai~L---~pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 366 RAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLL-QQYEEAIADFQKAISL---DPENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHH-HHHHHHHHHHHHHhhc---ChhhhHHHHHHHHHHHH
Confidence 344455555555555555555543311 122222211112222 4455666555555432 22 34455566666678
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----CCCCCH--HHHHHHHHHHHHcCC
Q 011102 348 LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS-----NCLFDL--PAYRVVIKLFVALND 420 (493)
Q Consensus 348 ~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~-----gi~pd~--~ty~~li~~~~~~g~ 420 (493)
.+++++++..|++-+++ ++--...||-.-..+...+++++|.+.|+...+. ++-.+. ...-+++-.-.+ ++
T Consensus 441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d 518 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-ED 518 (606)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hh
Confidence 88888999999887744 3445677888888888899999999888876542 222222 222233333344 78
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 421 ISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 421 ~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
+..|.++++.-.+..-+ ....|.+|-..-.+.|++++|.++|++-.
T Consensus 519 ~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88888888887765433 45678899999999999999999998864
No 96
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.56 E-value=0.0029 Score=63.32 Aligned_cols=122 Identities=12% Similarity=0.157 Sum_probs=76.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 011102 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL 418 (493)
Q Consensus 339 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~ 418 (493)
.+|+..+...++++.|.++|+++.+.. |++. ..|...+...++-.+|.+++++..+. .+-|......-...|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 445555555666777777777766542 4433 34666666666677777777766543 112444444445556777
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 419 NDISRAIRYFSKLKEAGFCPT-YDIYRDMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 419 g~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
++.+.|..+.++..+.. |+ ..+|..|..+|.+.|++++|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777776532 43 4477777777777777777777777664
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.53 E-value=0.0068 Score=52.03 Aligned_cols=92 Identities=10% Similarity=0.017 Sum_probs=49.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 011102 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454 (493)
Q Consensus 375 ~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 454 (493)
.+-..+...|++++|.+.|+....... .+...|..+-..+.+.|++++|...|+......- .+...+..+-.++.+.|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcC
Confidence 344455555555556555555544321 2344555555555556666666666665554321 24455555555555666
Q ss_pred CHHHHHHHHHHHHH
Q 011102 455 RLAKCRDVCKEAEM 468 (493)
Q Consensus 455 ~~~~A~~l~~~m~~ 468 (493)
+.++|.+.|+...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666655544
No 98
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.093 Score=53.48 Aligned_cols=264 Identities=12% Similarity=0.031 Sum_probs=187.9
Q ss_pred hhccCCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCc
Q 011102 175 KGLDSHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELK 249 (493)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~ 249 (493)
..+-...++.+.+.+++...+.+ .+..=|..+...|+..+-..+=..+.+. ..-...+|-++-.-|--.|+..
T Consensus 252 d~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHHHHHHHhcCcH
Confidence 44455688888888888777765 5566688888899888877777888754 3334567777766666667765
Q ss_pred hhhhHHHhh-ccCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--C-CCCCHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011102 250 VPFKLENFV-SLASK--GVLEATAKGFVKGGNLKLAWKLLMVAKDG--G-RMLDPSIYAKLILELGKNPDKYMLVMTLLD 323 (493)
Q Consensus 250 ~~~~l~~~~-~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g-~~pd~~t~~~li~~~~~~~~~~~~a~~l~~ 323 (493)
.++....-. .+... ..|-.+-+.|+-.|..|.|+..+...-+. | -.|. .|. ---|.+. +..+.|.++|.
T Consensus 330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~--LYl--gmey~~t-~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS--LYL--GMEYMRT-NNLKLAEKFFK 404 (611)
T ss_pred HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH--HHH--HHHHHHh-ccHHHHHHHHH
Confidence 555442211 12222 26888899999999999999988776652 2 1222 222 2246667 88999999998
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011102 324 ELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHS--GRDP----TVVMYTTLIHSRLSEKKCREALTVVWNME 397 (493)
Q Consensus 324 ~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p----~~~ty~~li~~~~~~g~~~~A~~l~~~M~ 397 (493)
+.... ..-|+...+-+--.....+.+.+|...|+.-... .+.+ -.-+++.|-++|.+.++.++|+..++...
T Consensus 405 ~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 405 QALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred HHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 87653 3446677777766777788899999999876521 1111 23457888899999999999999999876
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011102 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450 (493)
Q Consensus 398 ~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~ 450 (493)
.. ..-|..+|.++--.|...|+++.|.+.|.+-. .+.||-.+-+.++..+
T Consensus 483 ~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 483 LL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred Hc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 64 23577888888888999999999999998865 4568877777776644
No 99
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.50 E-value=0.0058 Score=63.65 Aligned_cols=190 Identities=12% Similarity=0.111 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 011102 264 GVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMK 343 (493)
Q Consensus 264 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~ 343 (493)
..|.-+|..|+..|+..+|..+..+-.+ -+||+..|..+.+..... .-+++|.++++....+.. ..++-.
T Consensus 425 emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~-s~yEkawElsn~~sarA~-----r~~~~~-- 494 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP-SLYEKAWELSNYISARAQ-----RSLALL-- 494 (777)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh-HHHHHHHHHhhhhhHHHH-----Hhhccc--
Confidence 4577788888888888888888877776 358888888888877777 778888888876533200 011111
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHH
Q 011102 344 VGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL-PAYRVVIKLFVALNDIS 422 (493)
Q Consensus 344 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~-~ty~~li~~~~~~g~~~ 422 (493)
..+.++++++.+.|+.-.+.. .--..+|-.+=.+..+.+++..|.+-|..-.. ..||- ..||.+-.+|.+.|+-.
T Consensus 495 -~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ 570 (777)
T KOG1128|consen 495 -ILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKK 570 (777)
T ss_pred -cccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhH
Confidence 122677888888887644321 23456677777777778888888888877654 24554 57888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 423 RAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 423 ~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
+|...+.+-.+.. .-+-..|...+-...+.|.+++|.+.+.+|.+
T Consensus 571 ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 571 RAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8888888888766 33556677777777888888888888887754
No 100
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.48 E-value=0.0064 Score=51.23 Aligned_cols=103 Identities=12% Similarity=0.035 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011102 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452 (493)
Q Consensus 373 y~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~ 452 (493)
...+...+...|+.++|.+.|+...+.+ ..+...+..+-..+.+.|++++|..+|+...+.+ ..+...|..+-..|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 4444455555555555555555554432 1234445555555555566666666665554433 2234445555555666
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHHHHH
Q 011102 453 SGRLAKCRDVCKEAEMAGFKLDKQTVV 479 (493)
Q Consensus 453 ~g~~~~A~~l~~~m~~~g~~pd~~t~~ 479 (493)
.|++++|.+.|+...+ +.|+...+.
T Consensus 98 ~g~~~~A~~~~~~al~--~~p~~~~~~ 122 (135)
T TIGR02552 98 LGEPESALKALDLAIE--ICGENPEYS 122 (135)
T ss_pred cCCHHHHHHHHHHHHH--hccccchHH
Confidence 6666666666665554 234444433
No 101
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.46 E-value=0.0048 Score=61.72 Aligned_cols=127 Identities=10% Similarity=0.016 Sum_probs=102.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 011102 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341 (493)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~l 341 (493)
+...-.+|+..+...++++.|.++|+++.+.. |+.. ..+...+... ++-.+|.+++++..+. ..-|......-
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~-~~E~~AI~ll~~aL~~--~p~d~~LL~~Q 240 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLM-NEEVEAIRLLNEALKE--NPQDSELLNLQ 240 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhc-CcHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 33455677788888899999999999999875 6543 3467777777 7889999999998764 33466666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011102 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTV-VMYTTLIHSRLSEKKCREALTVVWNME 397 (493)
Q Consensus 342 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~M~ 397 (493)
...|.+.++.+.|+++.++..+. .|+. .+|..|..+|.+.|++++|+-.++.|-
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77889999999999999999865 6655 599999999999999999999999874
No 102
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.45 E-value=0.074 Score=51.97 Aligned_cols=110 Identities=12% Similarity=0.141 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011102 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415 (493)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~ 415 (493)
.+.+..|.-+...|+...|.++-.+.+ .||..-|-..|.+|+..++|++-.++... .- ..+-|-.++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHH
Confidence 355666788888999999999998887 89999999999999999999998886543 22 347899999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011102 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465 (493)
Q Consensus 416 ~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 465 (493)
.+.|...+|..+...+ ++.--+..|.+.|++.+|.+.--+
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999998772 347778889999999999775433
No 103
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.032 Score=60.26 Aligned_cols=186 Identities=17% Similarity=0.122 Sum_probs=136.3
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcCCHHHHHHH
Q 011102 206 LGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKL 285 (493)
Q Consensus 206 ~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 285 (493)
...++..++|..+|+.... +....+.+|.-... .+++.+.-.......+|+.+..+-.+.|.+.+|.+-
T Consensus 1058 ai~~~LyEEAF~ifkkf~~------n~~A~~VLie~i~~-----ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFDM------NVSAIQVLIENIGS-----LDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred HhhhhHHHHHHHHHHHhcc------cHHHHHHHHHHhhh-----HHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHH
Confidence 3445566777777765432 34445555543332 222332233344567899999999999999999887
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011102 286 LMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSG 365 (493)
Q Consensus 286 ~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 365 (493)
|-+. -|+..|.-+|+...+. |.|++....+...+++ .-.|.+ =+.||-+|++.+++.+-+++..
T Consensus 1127 yika------dDps~y~eVi~~a~~~-~~~edLv~yL~MaRkk-~~E~~i--d~eLi~AyAkt~rl~elE~fi~------ 1190 (1666)
T KOG0985|consen 1127 YIKA------DDPSNYLEVIDVASRT-GKYEDLVKYLLMARKK-VREPYI--DSELIFAYAKTNRLTELEEFIA------ 1190 (1666)
T ss_pred HHhc------CCcHHHHHHHHHHHhc-CcHHHHHHHHHHHHHh-hcCccc--hHHHHHHHHHhchHHHHHHHhc------
Confidence 7643 4788999999999999 9999999998877766 555554 4689999999999988777654
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011102 366 RDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYF 428 (493)
Q Consensus 366 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~ 428 (493)
-||+.....+-+-|...|.++.|.-++. ++..|..|-..+...|++..|.+--
T Consensus 1191 -gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1191 -GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred -CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 7888888888999999999998888876 4556777777777777776665443
No 104
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.44 E-value=0.0074 Score=51.84 Aligned_cols=125 Identities=10% Similarity=0.074 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT---VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL--PAYRVV 411 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~--~ty~~l 411 (493)
.|..++..+ ..++...+...++.+.+.. ..+ ....-.+-..+...|++++|...|+........|+. ...-.|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3566666666666666542 111 122223445666677777777777776665422221 122334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011102 412 IKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465 (493)
Q Consensus 412 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 465 (493)
-..+...|++++|...++......+ ....+...-+.|.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4556677777777777755433222 334455666667777777777777664
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.44 E-value=0.15 Score=57.79 Aligned_cols=264 Identities=10% Similarity=-0.055 Sum_probs=162.8
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHHcCCCchhhhHH-----HhhccCc----HHHHHHHHH
Q 011102 205 ELGHMNLPERALQTFCWAQKQPHLFPDD----RLLASTVEVLARHHELKVPFKLE-----NFVSLAS----KGVLEATAK 271 (493)
Q Consensus 205 ~~~~~g~~~~A~~l~~~m~~~~g~~pd~----~t~~~li~~~~~~g~~~~~~~l~-----~~~~~~~----~~~~~~li~ 271 (493)
.+...|++++|...++....... ..+. ...+.+-..+...|+++.+.... ......+ ..++..+..
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 44578999999999988765211 1122 23344455566678765443321 1111111 124566677
Q ss_pred HHHhcCCHHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcC-CCCCC--HHHHHHH
Q 011102 272 GFVKGGNLKLAWKLLMVAKD----GGRM--L-DPSIYAKLILELGKNPDKYMLVMTLLDELGQRD-DLNLS--QQDCTAI 341 (493)
Q Consensus 272 ~~~~~g~~~~A~~l~~~m~~----~g~~--p-d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~-g~~p~--~~~~~~l 341 (493)
.+...|++++|...+++..+ .|.. + ....+..+-..+... |++++|...+.+..... ...+. ...+..+
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW-ARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 78889999999999887654 2221 1 122344444456667 99999999988764420 11122 3344445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHH-----HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHH
Q 011102 342 MKVGIRLQKFGVVESLFHWFTHSGRD-PTVVMY-----TTLIHSRLSEKKCREALTVVWNMEASNCLFDL---PAYRVVI 412 (493)
Q Consensus 342 i~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~ty-----~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~---~ty~~li 412 (493)
...+...|+.++|.+.+++.....-. .....+ ...+..+...|+.+.|.+.+............ ..+..+-
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 66778899999999999887542111 111111 11234556689999999998775542211111 1234566
Q ss_pred HHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 011102 413 KLFVALNDISRAIRYFSKLKE----AGFCPT-YDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470 (493)
Q Consensus 413 ~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 470 (493)
.++...|+.++|..++++... .|..++ ..+...+-.++.+.|+.++|...+.+..+..
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 778899999999999998763 233322 2456667778889999999999999987643
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.44 E-value=0.049 Score=59.85 Aligned_cols=217 Identities=10% Similarity=-0.006 Sum_probs=138.9
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcC
Q 011102 198 SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGG 277 (493)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g 277 (493)
.|..||..|-..+++++|.++.+...+...-.+...-|..+ .+...++.+.+- .. .+++.+....
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~------------lv-~~l~~~~~~~ 97 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSN------------LL-NLIDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhh------------hh-hhhhhccccc
Confidence 56778888888999999999998666542223333333333 333334322111 11 4566666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011102 278 NLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESL 357 (493)
Q Consensus 278 ~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 357 (493)
++..+.-+...|.+.+ -+...+-.+-.+|-+. |+.++|.++++++.+. . .-|....|-+-..|+.. ++++|+++
T Consensus 98 ~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~-g~~~ka~~~yer~L~~-D-~~n~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 98 KWAIVEHICDKILLYG--ENKLALRTLAEAYAKL-NENKKLKGVWERLVKA-D-RDNPEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred chhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHc-CChHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHh-hHHHHHHH
Confidence 6655555666666643 3444666777777777 8888888888888775 3 45667777777777777 88888887
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH------------------C-CCCCCHHHHHHHHHHHHHc
Q 011102 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA------------------S-NCLFDLPAYRVVIKLFVAL 418 (493)
Q Consensus 358 ~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~------------------~-gi~pd~~ty~~li~~~~~~ 418 (493)
+.+-.+. |...+++.++.++|.++.. . |..--+.++-.+...|-+.
T Consensus 172 ~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~ 236 (906)
T PRK14720 172 LKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKAL 236 (906)
T ss_pred HHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhh
Confidence 7766533 3333444444444444433 2 3333445566666788888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011102 419 NDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451 (493)
Q Consensus 419 g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 451 (493)
.+++++..+++...+..-. |.....-++..|.
T Consensus 237 ~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 237 EDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 9999999999999876544 6666777777776
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.42 E-value=0.012 Score=61.39 Aligned_cols=228 Identities=12% Similarity=0.095 Sum_probs=154.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHH--hhccCcHHHHHHHHHHHHhcCC
Q 011102 201 FTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLEN--FVSLASKGVLEATAKGFVKGGN 278 (493)
Q Consensus 201 ~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~--~~~~~~~~~~~~li~~~~~~g~ 278 (493)
.+-..+...|-...|+.+|+.... |.-+|.+|+..|+...++.+.. ....++...|..+.+......-
T Consensus 403 ~laell~slGitksAl~I~Erlem----------w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLEM----------WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHHH----------HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 345577788888889888887653 4667778888887555554422 2335567778888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011102 279 LKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLF 358 (493)
Q Consensus 279 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 358 (493)
++.|+++++.--.. .-..+-.-.... ++++++.+.|+.-.+.. ..-..+|-.+-.+..+.++++.|.+.|
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~-~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSN-KDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccc-hhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 88888888754322 111111111224 78888888888755441 234557777777778888999999988
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CC
Q 011102 359 HWFTHSGRDP-TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA-GF 436 (493)
Q Consensus 359 ~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~-g~ 436 (493)
..-..- .| +...||.+=.+|.+.|+-.+|...+.+..+-+ .-+...|-.-+....+.|.+++|.+.+..|.+- ..
T Consensus 543 ~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 543 HRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 876632 45 45789999999999999999999999887766 334445666666778889999999988887621 11
Q ss_pred CCCHHHHHHHHHHHH
Q 011102 437 CPTYDIYRDMIRIFM 451 (493)
Q Consensus 437 ~p~~~ty~~li~~~~ 451 (493)
.-|..+-..++.+..
T Consensus 620 ~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 620 YKDDEVLLIIVRTVL 634 (777)
T ss_pred cccchhhHHHHHHHH
Confidence 124444444544443
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.40 E-value=0.011 Score=53.84 Aligned_cols=116 Identities=8% Similarity=0.027 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HcCCC--HHHH
Q 011102 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSR-LSEKK--CREA 389 (493)
Q Consensus 313 ~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~-~~~g~--~~~A 389 (493)
++.+++...++...+. -..|...|..+-..|...|++++|...|++..+.. .-+...+..+-.++ ...|+ .++|
T Consensus 53 ~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 53 QTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred hhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4444444444444332 12344455555555555555555555555544332 12344444444432 34444 2555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 390 ~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
.+++++..+..-. +...+..+-..+.+.|++++|...|+.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555443221 33444444455555555555555555554
No 109
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.39 E-value=0.015 Score=60.53 Aligned_cols=108 Identities=10% Similarity=0.129 Sum_probs=67.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 011102 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422 (493)
Q Consensus 343 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~ 422 (493)
.+-.....+.+|+.+++.++.+.. -.--|.-+.+-|+..|+++.|.++|-+. -.++-.|.+|.++|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 344455667777777777764422 1223666667777788888888877642 12566677788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011102 423 RAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463 (493)
Q Consensus 423 ~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 463 (493)
+|.++-.+. .|-......|-+-..-+-+.|++.+|.+++
T Consensus 809 da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 809 DAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 877775543 343444555655555566666666666554
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.38 E-value=0.07 Score=57.72 Aligned_cols=129 Identities=9% Similarity=-0.047 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011102 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQ-QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTT 375 (493)
Q Consensus 297 d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 375 (493)
+...+-.|-....+. |..++|..+++...+. .||. .....+...+.+.+++++|+..++...... .-+....+.
T Consensus 85 ~~~~~~~La~i~~~~-g~~~ea~~~l~~~~~~---~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAA-HRSDEGLAVWRGIHQR---FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHc-CCcHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 344555555555555 6666666666666543 3443 344455566666666666666666665431 223444555
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 376 LIHSRLSEKKCREALTVVWNMEASNCLFD-LPAYRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 376 li~~~~~~g~~~~A~~l~~~M~~~gi~pd-~~ty~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
+-.++.+.|++++|.++|++.... .|| ..++..+=.++-+.|+.++|...|+...
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556666666666666666666652 222 4556666666666666666666666655
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.38 E-value=0.031 Score=51.58 Aligned_cols=154 Identities=10% Similarity=-0.021 Sum_probs=95.1
Q ss_pred HHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 011102 307 ELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386 (493)
Q Consensus 307 ~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 386 (493)
.+... |+-+....+....... ..-|...-+..+....+.|++.+|...|++... .-++|...||.+--+|-+.|+.
T Consensus 75 a~~~~-G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 75 ALYLR-GDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-LAPTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHhc-ccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-cCCCChhhhhHHHHHHHHccCh
Confidence 33444 4555555555443322 233444555567777777777777777777653 2256777777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466 (493)
Q Consensus 387 ~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 466 (493)
++|..-|.+..+.-. -+...+|.|--.|.-.|+.+.|..++..-...+-. |...-..+.-.....|++++|.++...-
T Consensus 151 ~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 151 DEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred hHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 777777776655422 12345566666666777777777777776655443 4444555666667777777777665443
No 112
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.13 Score=49.45 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=32.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHH
Q 011102 412 IKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR-DMIRIFMASGRLAKCRDVCKEA 466 (493)
Q Consensus 412 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~-~li~~~~~~g~~~~A~~l~~~m 466 (493)
-.+++..|...+|+++|-.+....++ |..+|- .|..+|.+.++.+.|++++-.+
T Consensus 400 AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 400 AQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 35556667777777777666544444 555554 3445666777777776665544
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.32 E-value=0.053 Score=49.21 Aligned_cols=130 Identities=6% Similarity=-0.080 Sum_probs=88.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCC--HHHH
Q 011102 348 LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL-FVALND--ISRA 424 (493)
Q Consensus 348 ~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~-~~~~g~--~~~A 424 (493)
.++.+++...++...+.. +.|...|..|-..|...|+.++|...|++..+..- -|...+..+-.+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455666666666654332 45777888888888888888888888887766432 245555665555 356666 4888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHH
Q 011102 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVEL 481 (493)
Q Consensus 425 ~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~L 481 (493)
.+++++..+..-. +...+..+-..+.+.|++++|...|+++.+. ..|+..-+..+
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~~i 184 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHHHHH
Confidence 8888888765543 6677777778888888888888888888664 34455444433
No 114
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.30 E-value=0.29 Score=50.91 Aligned_cols=278 Identities=13% Similarity=0.024 Sum_probs=168.4
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHH---hhccCcHHHHHHHHHHHH
Q 011102 198 SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLEN---FVSLASKGVLEATAKGFV 274 (493)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~---~~~~~~~~~~~~li~~~~ 274 (493)
+|+.--..|.+.+.++-|..+|...... +.-+...|...+..=-..|..+..+++.. +.-....+.|-....-+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 4555555666666666666666655532 23344445544444444444333333321 111223445555555566
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 011102 275 KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVV 354 (493)
Q Consensus 275 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 354 (493)
..|++..|..++.+.-+..- -+...|-.-+.--..+ ..++.|..+|..... ..|+..+|.--++.-.-.+++++|
T Consensus 596 ~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en-~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFEN-DELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhcc-ccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHH
Confidence 66777777777777766542 2455666666667777 777777777777654 345666666555555666777777
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 355 ESLFHWFTHSGRDPTV-VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433 (493)
Q Consensus 355 ~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 433 (493)
.+++++-.+. -|+- -.|-.+-+.+-+.++++.|.+.+..=.+ .+.-.+..|-.|...=-+.|.+-.|..+++.-.-
T Consensus 671 ~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k-~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 671 LRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK-KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc-cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 7777665533 3443 2344444555555566666555543111 2323344566666666788899999999998876
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHhhhh
Q 011102 434 AGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIEKE 487 (493)
Q Consensus 434 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~~~~~ 487 (493)
++-. |...|-..|..=.+.|..+.|..++.+..+. +.-+...|..-|.+.+.
T Consensus 748 kNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 748 KNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPR 799 (913)
T ss_pred cCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccC
Confidence 5543 7788999999999999999999888777653 55556666666665443
No 115
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.032 Score=55.80 Aligned_cols=227 Identities=12% Similarity=0.040 Sum_probs=156.0
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhc-----cCcHHHHHHHHHHHHhcCCHHHHH
Q 011102 209 MNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVS-----LASKGVLEATAKGFVKGGNLKLAW 283 (493)
Q Consensus 209 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~ 283 (493)
.|+...|.+-|+...+. .-.++. .|.-+-.+|....+- .+-+..|.. ..+..+|..--..+.-.+++++|.
T Consensus 339 ~g~~~~a~~d~~~~I~l-~~~~~~-lyI~~a~~y~d~~~~--~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKL-DPAFNS-LYIKRAAAYADENQS--EKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred cCCchhhhhhHHHHHhc-Ccccch-HHHHHHHHHhhhhcc--HHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 46777888888887754 222222 255555566665552 233333332 225567877777777888999999
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 284 KLLMVAKDGGRMLD-PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFT 362 (493)
Q Consensus 284 ~l~~~m~~~g~~pd-~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 362 (493)
.=|++.++.. |. ...|--+-.+..+. ++++++...|++.+++ +.-.+..||-.-..+...++++.|.+.|+.-.
T Consensus 415 aDF~Kai~L~--pe~~~~~iQl~~a~Yr~-~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 415 ADFQKAISLD--PENAYAYIQLCCALYRQ-HKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHhhcC--hhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 9999988743 33 34555566666788 8999999999999886 66778899999999999999999999999876
Q ss_pred HcCCC-----CCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 011102 363 HSGRD-----PTVV--MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435 (493)
Q Consensus 363 ~~g~~-----p~~~--ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g 435 (493)
+..-. .+.. .--+++-.- -.+++..|.+++....+..-+ ....|-+|-..-.+.|++++|.++|++-..
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~-- 565 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ-- 565 (606)
T ss_pred hhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--
Confidence 43111 1111 111222222 338999999999988765322 346789999999999999999999997652
Q ss_pred CCCCHHHHHHHHHHHH
Q 011102 436 FCPTYDIYRDMIRIFM 451 (493)
Q Consensus 436 ~~p~~~ty~~li~~~~ 451 (493)
-..|-.-++++|.
T Consensus 566 ---lArt~~E~~~a~s 578 (606)
T KOG0547|consen 566 ---LARTESEMVHAYS 578 (606)
T ss_pred ---HHHhHHHHHHHHH
Confidence 1234455555554
No 116
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.27 E-value=0.029 Score=56.18 Aligned_cols=159 Identities=13% Similarity=0.047 Sum_probs=110.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 011102 300 IYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT-VVMYTTLIH 378 (493)
Q Consensus 300 t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~ 378 (493)
-|..-+..| .. |..++|+..++.+... ..-|..-+....+.+.+.++..+|.+.++.+... .|+ ...+-.+-+
T Consensus 309 ~YG~A~~~~-~~-~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~ 382 (484)
T COG4783 309 QYGRALQTY-LA-GQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHH-Hh-cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHH
Confidence 344444333 34 6788888888887764 3334444455677888889999999999888765 566 555667778
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 011102 379 SRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458 (493)
Q Consensus 379 ~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 458 (493)
+|.+.|+..+|..++++-... .+-|...|..|-.+|...|+..+|..-.. ++|...|++++
T Consensus 383 all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~ 443 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQ 443 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHH
Confidence 888889999998888886553 34567788889999999888887766543 34566788888
Q ss_pred HHHHHHHHHHCC--CccCHHHHHHHHH
Q 011102 459 CRDVCKEAEMAG--FKLDKQTVVELLQ 483 (493)
Q Consensus 459 A~~l~~~m~~~g--~~pd~~t~~~Ll~ 483 (493)
|...+....+.. -.|+-.-+...|.
T Consensus 444 A~~~l~~A~~~~~~~~~~~aR~dari~ 470 (484)
T COG4783 444 AIIFLMRASQQVKLGFPDWARADARID 470 (484)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 888777776542 2334333444443
No 117
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.25 E-value=0.013 Score=50.26 Aligned_cols=126 Identities=13% Similarity=0.151 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH
Q 011102 301 YAKLILELGKNPDKYMLVMTLLDELGQRDDLN-LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTV--VMYTTLI 377 (493)
Q Consensus 301 ~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~ty~~li 377 (493)
|..++..+. . ++...+...++.+....+-. ......-.+-..+...|++++|...|++.......|+. ...-.|.
T Consensus 15 y~~~~~~~~-~-~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQALQ-A-GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-C-CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 334444443 3 56666766677766542111 01112223345666777777777777777765533322 2334456
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011102 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430 (493)
Q Consensus 378 ~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~ 430 (493)
..+...|++++|+..++....... ....+...=+.|.+.|+.++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 667777777777777765332222 223344444567777777777777764
No 118
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.24 E-value=0.024 Score=48.58 Aligned_cols=89 Identities=8% Similarity=-0.057 Sum_probs=37.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011102 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDI 421 (493)
Q Consensus 342 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~ 421 (493)
-..+...|++++|...|+...... +.+...|..+-..+.+.|++++|...|+...+.. ..+...+..+-.++...|+.
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 333444444444444444443221 1233444444444444444444444444444321 12333444444444444444
Q ss_pred HHHHHHHHHHH
Q 011102 422 SRAIRYFSKLK 432 (493)
Q Consensus 422 ~~A~~~~~~m~ 432 (493)
++|...|+...
T Consensus 109 ~eAi~~~~~Al 119 (144)
T PRK15359 109 GLAREAFQTAI 119 (144)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.24 E-value=0.021 Score=48.04 Aligned_cols=97 Identities=14% Similarity=0.066 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011102 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415 (493)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~ 415 (493)
.....+...+.+.|++++|.+.|+.....+ +.+...|..+-..|.+.|++++|...++...+.+ ..+...+..+-..|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334455566677777777777777766543 3356667777777777777777777777765543 23445555566677
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 011102 416 VALNDISRAIRYFSKLKEA 434 (493)
Q Consensus 416 ~~~g~~~~A~~~~~~m~~~ 434 (493)
...|+.++|...|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777776653
No 120
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.23 E-value=0.5 Score=53.58 Aligned_cols=264 Identities=11% Similarity=-0.003 Sum_probs=151.7
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCC-----CCCHHHH--HHHHHHHHHcCCCchhhhHHH--hhccC--cH----HHHHH
Q 011102 204 RELGHMNLPERALQTFCWAQKQPHL-----FPDDRLL--ASTVEVLARHHELKVPFKLEN--FVSLA--SK----GVLEA 268 (493)
Q Consensus 204 ~~~~~~g~~~~A~~l~~~m~~~~g~-----~pd~~t~--~~li~~~~~~g~~~~~~~l~~--~~~~~--~~----~~~~~ 268 (493)
..+...|++++|..++........- .++...- ..+-..+...|+++.+..... ....+ +. ...+.
T Consensus 417 ~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 496 (903)
T PRK04841 417 WLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSV 496 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 3445678888888888776542110 1111111 111222345566444333211 11111 11 23456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC---CC--HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhc---CCCC--C-CHHH
Q 011102 269 TAKGFVKGGNLKLAWKLLMVAKDGGRM---LD--PSIYAKLILELGKNPDKYMLVMTLLDELGQR---DDLN--L-SQQD 337 (493)
Q Consensus 269 li~~~~~~g~~~~A~~l~~~m~~~g~~---pd--~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~---~g~~--p-~~~~ 337 (493)
+-..+...|++++|...+++.....-. +. ..++..+-..+... |++++|...+++.... .+.. + ....
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ-GFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 666777899999999998887642111 11 12334444556677 9999999988775432 1211 1 2233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCCHHH--
Q 011102 338 CTAIMKVGIRLQKFGVVESLFHWFTHS--GRDP--TVVMYTTLIHSRLSEKKCREALTVVWNMEAS----NCLFDLPA-- 407 (493)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p--~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----gi~pd~~t-- 407 (493)
+..+-..+...|++++|...+.+.... ...+ ....+..+...+...|+.++|.+.+.+.... +.......
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 445555677789999999998876532 1112 2344555667788899999999988887542 11111101
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 408 YRVVIKLFVALNDISRAIRYFSKLKEAGFCPT---YDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 408 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
-...+..+...|+.+.|..++........... ...+..+..++...|++++|..++++...
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 01123445668899999999877553221111 11234566778899999999999988764
No 121
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.042 Score=52.73 Aligned_cols=193 Identities=9% Similarity=0.068 Sum_probs=126.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHhcCC---CCHHHHHHHHHHHhhcCCCCCCHH-HHHHHHH
Q 011102 269 TAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLIL-ELGKNP---DKYMLVMTLLDELGQRDDLNLSQQ-DCTAIMK 343 (493)
Q Consensus 269 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~-~~~~~~---~~~~~a~~l~~~m~~~~g~~p~~~-~~~~li~ 343 (493)
|+-.|.+.+++.+|..+.+++.- ..|-......++. ++++.. ..+.-|.+.|+-.... +..-|.. --.++-+
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~S-a~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGES-ALECDTIPGRQSMAS 367 (557)
T ss_pred heeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccc-ccccccccchHHHHH
Confidence 44557889999999988776432 2232222222222 233321 3456777777766555 4443332 2234555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHH
Q 011102 344 VGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV-VIKLFVALNDIS 422 (493)
Q Consensus 344 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~-li~~~~~~g~~~ 422 (493)
.+.-..++++.+-.++.++..=..-|.+-|| +.++++..|...+|+++|-......++ |..+|.+ |-++|.+.++.+
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCch
Confidence 5566677889988888888776666777666 578899999999999999877655554 5566655 457789999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 423 RAIRYFSKLKEAGFCPTYDIY-RDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 423 ~A~~~~~~m~~~g~~p~~~ty-~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
.|++++-.+... .+..+. ..+.+-|-+.+.+--|-+.|++++..
T Consensus 446 lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 446 LAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 998888666532 233333 34455677888888888888888763
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.17 E-value=0.037 Score=60.78 Aligned_cols=196 Identities=10% Similarity=-0.023 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHhcCCCCHHHHHHH------------------HHH
Q 011102 264 GVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLIL-ELGKNPDKYMLVMTL------------------LDE 324 (493)
Q Consensus 264 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~-~~~~~~~~~~~a~~l------------------~~~ 324 (493)
..|..|+..|...+++++|.++.+.-.+.. |+...+-.+.. -+.+. ++..++..+ ...
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~-~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~ 108 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSR-RPLNDSNLLNLIDSFSQNLKWAIVEHICDK 108 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhh-cchhhhhhhhhhhhcccccchhHHHHHHHH
Confidence 456677777777777777777777554432 44332211111 22222 334433333 222
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 011102 325 LGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404 (493)
Q Consensus 325 m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd 404 (493)
|... .-+...+-.+..+|-+.|+.++|..+|+++.+.. .-|....|-+-..|+.. ++++|++++.+....-+ |
T Consensus 109 i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~ 181 (906)
T PRK14720 109 ILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--K 181 (906)
T ss_pred HHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--h
Confidence 2221 1223456677888889999999999999998776 56788899999999999 99999999988765411 1
Q ss_pred HHHHHHHHH---HHHH--cCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 405 LPAYRVVIK---LFVA--LNDISRAIRYFSKLK-EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 405 ~~ty~~li~---~~~~--~g~~~~A~~~~~~m~-~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
..-|+.+.. -+|. ..+++.-.++.+.+. ..|..--+.++--+...|-...+|+++.++++...+.
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 222333322 2222 223444444555554 2354555667777788888999999999999999864
No 123
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.13 E-value=0.02 Score=46.66 Aligned_cols=97 Identities=10% Similarity=-0.010 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHH
Q 011102 373 YTTLIHSRLSEKKCREALTVVWNMEASNC--LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG--FCPTYDIYRDMIR 448 (493)
Q Consensus 373 y~~li~~~~~~g~~~~A~~l~~~M~~~gi--~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~ty~~li~ 448 (493)
+-.+...+.+.|++++|.+.|..+.+..- ......+..+...+.+.|++++|...|+.+.... -......+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444555555666666666655544311 0112234445555666666666666666655321 1111334555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 011102 449 IFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 449 ~~~~~g~~~~A~~l~~~m~~~ 469 (493)
++.+.|+.++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 566666666666666666554
No 124
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.11 E-value=0.081 Score=53.65 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=121.5
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHH
Q 011102 314 KYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP-TVVMYTTLIHSRLSEKKCREALTV 392 (493)
Q Consensus 314 ~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l 392 (493)
+.+...+.++++.....++|+ .+|-..|+.-.|..-++.|..+|.+..+.+..+ ++..++++|.-||. ++..-|.++
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrI 423 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRI 423 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHH
Confidence 356666777777665455565 467788888889889999999999999998888 89999999998886 677899999
Q ss_pred HHH-HHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 393 VWN-MEASNCLFDLPA-YRVVIKLFVALNDISRAIRYFSKLKEAGFCPT--YDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 393 ~~~-M~~~gi~pd~~t-y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
|+- |+..| |... -...++-+.+.++-..|..+|++....++.|| ...|..+|+-=...|+...+.++-+++..
T Consensus 424 FeLGLkkf~---d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 424 FELGLKKFG---DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHhcC---CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 986 55543 4333 35677888899999999999999998866655 47899999999999999999999887754
No 125
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.35 Score=47.69 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=63.4
Q ss_pred CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHH
Q 011102 401 CLFDL-PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVV 479 (493)
Q Consensus 401 i~pd~-~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 479 (493)
+.|+- ...+.+-..|...|..+++..+++.-.. ..||...-+.|-+.+...+.+++|++.|......+ +-|..+..
T Consensus 433 ~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d-P~~~~sl~ 509 (564)
T KOG1174|consen 433 INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD-PKSKRTLR 509 (564)
T ss_pred cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-ccchHHHH
Confidence 34543 2345556778889999999999988764 34899999999999999999999999998877643 22566666
Q ss_pred HHHHhhhhc
Q 011102 480 ELLQIEKES 488 (493)
Q Consensus 480 ~Ll~~~~~~ 488 (493)
.|=+++|+.
T Consensus 510 Gl~~lEK~~ 518 (564)
T KOG1174|consen 510 GLRLLEKSD 518 (564)
T ss_pred HHHHHHhcc
Confidence 666666654
No 126
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.06 E-value=0.013 Score=44.57 Aligned_cols=92 Identities=14% Similarity=0.083 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 011102 374 TTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453 (493)
Q Consensus 374 ~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 453 (493)
..+...+...|++++|.+.+++..+..- .+...+..+...+...|++++|.+.|+....... .+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHH
Confidence 3344444555555555555555443311 1223444455555555666666666655544321 1234555555566666
Q ss_pred CCHHHHHHHHHHHH
Q 011102 454 GRLAKCRDVCKEAE 467 (493)
Q Consensus 454 g~~~~A~~l~~~m~ 467 (493)
|++++|.+.++...
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 66666666655544
No 127
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.17 Score=47.66 Aligned_cols=251 Identities=10% Similarity=0.091 Sum_probs=144.9
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH--cCCCchhhhHHHhhccCcHHHHHHHH---HHHHhcCC
Q 011102 204 RELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLAR--HHELKVPFKLENFVSLASKGVLEATA---KGFVKGGN 278 (493)
Q Consensus 204 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~--~g~~~~~~~l~~~~~~~~~~~~~~li---~~~~~~g~ 278 (493)
..+-+.+.+.+|+++...|... |+...-..-+.+-.+ .+++-..+.+ ....+...+-..+| -...+.|+
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsL--veQlp~en~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSL--VEQLPSENEADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHH--HHhccCCCccchhccchheeecccc
Confidence 4556777888888888887643 222221222222222 2333223322 34444333222333 33458899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCC-------------CCHH---------
Q 011102 279 LKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN-------------LSQQ--------- 336 (493)
Q Consensus 279 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~-------------p~~~--------- 336 (493)
.++|.+-|+...+-|=--....||.-+..|.+ ++...|++...++.++ |++ ||+.
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniALaHy~~--~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLALAHYSS--RQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHHHHhh--hhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHH
Confidence 99999999988875433456789988877765 5889999999998876 432 1211
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011102 337 ------DCTAIMKVGIRLQKFGVVESLFHWFT-HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409 (493)
Q Consensus 337 ------~~~~li~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~ 409 (493)
.+|.-...+.+.|+.+.|.+-+-+|. +.....|.+|...+.-.=. .+++.+..+-+.-+.+.+- .-..||.
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFA 314 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFA 314 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHH
Confidence 23333344567899999999999885 2233445565544322111 2333333333333333332 2357999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Q 011102 410 VVIKLFVALNDISRAIRYFSKLKEAGFC-PTYDIYRDMIRIFMAS-GRLAKCRDVCKEA 466 (493)
Q Consensus 410 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~ty~~li~~~~~~-g~~~~A~~l~~~m 466 (493)
.++-.|||..-++.|-+++-+=.....+ .+..-|+ |++++.-. -..++|++-++.+
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999888654322111 2334444 44554433 3456665544443
No 128
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.045 Score=51.35 Aligned_cols=194 Identities=12% Similarity=0.084 Sum_probs=129.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHH-H
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRML-DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI-M 342 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~l-i 342 (493)
-+++.+..+.+..++++|.+++.--.+.. | +....+.+-.+|... .++..|-..++.+... .|...-|-.- -
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~-Q~f~~AA~CYeQL~ql---~P~~~qYrlY~A 85 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRL-QEFALAAECYEQLGQL---HPELEQYRLYQA 85 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh---ChHHHHHHHHHH
Confidence 35667777788888888888887666543 4 555666677777777 7888888888888653 3555544432 3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011102 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSR--LSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALND 420 (493)
Q Consensus 343 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~--~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~ 420 (493)
..+.+.+.+.+|+++...|... |+...=..-+.+- ...+++..+..++++....| +..+.+..-....+.|+
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecccc
Confidence 4566778888888888888742 4444333333332 34567777777777654322 22222333333468899
Q ss_pred HHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc
Q 011102 421 ISRAIRYFSKLK-EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472 (493)
Q Consensus 421 ~~~A~~~~~~m~-~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 472 (493)
.+.|.+-|+... -.|.. ....||.-+..| +.|+++.|+++..++.++|++
T Consensus 160 yEaAvqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 999999988877 45565 456688776655 557888999999998887764
No 129
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.97 E-value=0.5 Score=50.93 Aligned_cols=101 Identities=17% Similarity=0.133 Sum_probs=46.9
Q ss_pred hCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--HcCCCchhhhHHHhhc-----cCcHHHHHHHHHHHHhcCCHH
Q 011102 208 HMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLA--RHHELKVPFKLENFVS-----LASKGVLEATAKGFVKGGNLK 280 (493)
Q Consensus 208 ~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~--~~g~~~~~~~l~~~~~-----~~~~~~~~~li~~~~~~g~~~ 280 (493)
..+++..|+.......++. |+. .|..++.|+. |.|+.+ ++...... ..|..|..++-..|...++.+
T Consensus 21 d~~qfkkal~~~~kllkk~---Pn~-~~a~vLkaLsl~r~gk~~--ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH---PNA-LYAKVLKALSLFRLGKGD--EALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHhcCch--hHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence 4556667777666666542 221 2334444433 223221 12111111 013445555555555555566
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHH
Q 011102 281 LAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYML 317 (493)
Q Consensus 281 ~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~ 317 (493)
+|..+|+...+. .|+..-...+..+|.+. +.+.+
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~-~~yk~ 128 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVRE-KSYKK 128 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHH-HHHHH
Confidence 666666555443 25544445555555555 44433
No 130
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.97 E-value=0.015 Score=55.98 Aligned_cols=144 Identities=10% Similarity=0.019 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 011102 264 GVLEATAKGFVKGGNLKLAWKLLMVAKDGG-RMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIM 342 (493)
Q Consensus 264 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li 342 (493)
.+|-.++...-+.+..+.|..+|.+..+.+ +..+.....++|.-++. ++.+.|..+|+...+. +..+...|..-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~--~d~~~A~~Ife~glk~--f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCN--KDPKRARKIFERGLKK--FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTC--S-HHHHHHHHHHHHHH--HTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHH--CCCCHHHHHHHH
Confidence 368888888888888999999999998654 34555555666655543 4667799999998875 666788888889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011102 343 KVGIRLQKFGVVESLFHWFTHSGRDPTV----VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415 (493)
Q Consensus 343 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~ 415 (493)
+.+.+.|+.+.|..+|+..... .|.. ..|...|+-=.+.|+++.+.++.+++.+. .|+......+++-|
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 9999999999999999988754 3333 48999999888999999999998888764 44544444444433
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.18 Score=46.74 Aligned_cols=151 Identities=18% Similarity=0.149 Sum_probs=102.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH--
Q 011102 270 AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR-- 347 (493)
Q Consensus 270 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~-- 347 (493)
...|++.|++++|++...... ..+... .=+..+.+. .+++-|.+.++.|.+- -+..|.+.|-.+|.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~----~lE~~A--l~VqI~lk~-~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la 183 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE----NLEAAA--LNVQILLKM-HRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLA 183 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc----hHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHh
Confidence 345788889999988887621 123322 223345566 7788899888888764 355666655555544
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHH
Q 011102 348 --LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDI-SRA 424 (493)
Q Consensus 348 --~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~-~~A 424 (493)
.+++.+|.-+|++|.+ ...|+.-+-|-+..++...|++++|..++++...+.-. |..|...+|-.--..|.- +-.
T Consensus 184 ~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred ccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHH
Confidence 4668899999999874 24788888888888899999999999999988776432 344555555544445544 445
Q ss_pred HHHHHHHHH
Q 011102 425 IRYFSKLKE 433 (493)
Q Consensus 425 ~~~~~~m~~ 433 (493)
.+.+..++.
T Consensus 262 ~r~l~QLk~ 270 (299)
T KOG3081|consen 262 ERNLSQLKL 270 (299)
T ss_pred HHHHHHHHh
Confidence 567777764
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.96 E-value=0.1 Score=48.16 Aligned_cols=154 Identities=11% Similarity=-0.009 Sum_probs=89.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCH
Q 011102 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKF 351 (493)
Q Consensus 272 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~ 351 (493)
.+.-.|+-+....+....... -.-|....+..+....+. |++.+|...|.+...- -.+|...|+.+--+|-+.|++
T Consensus 75 a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~-g~~~~A~~~~rkA~~l--~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 75 ALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRN-GNFGEAVSVLRKAARL--APTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHh-cchHHHHHHHHHHhcc--CCCChhhhhHHHHHHHHccCh
Confidence 334444444444444432221 112333444466666666 6777777777666552 456666777777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 352 GVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431 (493)
Q Consensus 352 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m 431 (493)
++|..-|.+..+.-. -+...+|.|--.|.-.|+.++|..++......+- -|...-..+.-.....|++++|.++...-
T Consensus 151 ~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 151 DEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred hHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 777777666554311 1223455666666666777777777777665543 24455566666667777777777665443
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.95 E-value=0.076 Score=57.45 Aligned_cols=180 Identities=7% Similarity=-0.052 Sum_probs=135.8
Q ss_pred cCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC-HHH
Q 011102 260 LASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI-YAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS-QQD 337 (493)
Q Consensus 260 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~-~~~ 337 (493)
|.+...+--|.....+.|..++|+.+|+...+. .||... ...+...+.+. +++++|+...+..... .|+ ...
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~-~~~eeA~~~~~~~l~~---~p~~~~~ 156 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQ-QGIEAGRAEIELYFSG---GSSSARE 156 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHh-ccHHHHHHHHHHHhhc---CCCCHHH
Confidence 456778888999999999999999999999884 587664 45667788888 9999999999998765 354 445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011102 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417 (493)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~ 417 (493)
...+-.++.+.|++++|.++|++.... ..-+..++..+-..+-..|+.++|...|+...+. ..|....|+..+.
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~---- 230 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV---- 230 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH----
Confidence 667778889999999999999999873 2344788999999999999999999999998764 2355566776543
Q ss_pred cCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHHc
Q 011102 418 LNDISRAIRYFSKLKE----AGFCPTYDIYRDMIRIFMAS 453 (493)
Q Consensus 418 ~g~~~~A~~~~~~m~~----~g~~p~~~ty~~li~~~~~~ 453 (493)
++..-..+++++.- .|..........+|.-|.+.
T Consensus 231 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 231 --DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred --HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 44445566666652 23333445556666666544
No 134
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.93 E-value=0.019 Score=43.59 Aligned_cols=94 Identities=14% Similarity=0.050 Sum_probs=60.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011102 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417 (493)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~ 417 (493)
+..+...+...|++++|..+|++..+.. ..+...+..+...+...|++++|.+.++....... .+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHH
Confidence 3445556666777777777777765432 22335566667777777777777777777655432 233466666677777
Q ss_pred cCCHHHHHHHHHHHHH
Q 011102 418 LNDISRAIRYFSKLKE 433 (493)
Q Consensus 418 ~g~~~~A~~~~~~m~~ 433 (493)
.|+.++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777766553
No 135
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.90 E-value=0.036 Score=53.30 Aligned_cols=129 Identities=19% Similarity=0.181 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011102 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSG-RDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414 (493)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~ 414 (493)
.+|..+|...-+.+.++.|..+|.+..+.+ +..+++...++|.-+ ..++.+.|.++|+...+. +.-+..-|..-|+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 355666666666666666666666665332 234444444444322 234455566666665443 33344555666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 415 FVALNDISRAIRYFSKLKEAGFCPTY----DIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 415 ~~~~g~~~~A~~~~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
+.+.|+.+.|..+|++.... + |.. ..|...|+-=.+.|+.+.+.++.+.+.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666533 2 222 3666666666666666666666666654
No 136
>PLN02789 farnesyltranstransferase
Probab=96.89 E-value=0.5 Score=46.32 Aligned_cols=47 Identities=6% Similarity=-0.149 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011102 316 MLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHS 364 (493)
Q Consensus 316 ~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 364 (493)
++++.+++.+.+. -.-|..+|+-....+.+.|++++|++.++++.+.
T Consensus 125 ~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 125 NKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444455444432 1223445555555555555555555555555443
No 137
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.75 Score=47.43 Aligned_cols=308 Identities=12% Similarity=0.071 Sum_probs=177.3
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 011102 168 ISLARDIKGLDSHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVL 242 (493)
Q Consensus 168 ~~l~~~l~~~~~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~ 242 (493)
..+...++.+...+++++|+....+....+ .+..=+-++.+.+++++|+.+.+.-. +..-+.+-+ +=.+|
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~---~~~~~~~~~--fEKAY 87 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG---ALLVINSFF--FEKAY 87 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc---hhhhcchhh--HHHHH
Confidence 466677888999999999999998877663 55555678889999999996654322 111111111 35666
Q ss_pred HHcCCCchhhhHHHhhcc--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-------------------------
Q 011102 243 ARHHELKVPFKLENFVSL--ASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRM------------------------- 295 (493)
Q Consensus 243 ~~~g~~~~~~~l~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~------------------------- 295 (493)
|--..-..++++..+... .+..+...=...+-+.|++++|+.+|+.+.+++..
T Consensus 88 c~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred HHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 654433356666555532 23445555556677889999999999988654421
Q ss_pred --CCHHHHHHHHH---HHhcCCCCHHHHHHHHHHHhhc-------CCCC-----CCHHHH-HHHHHHHHHcCCHHHHHHH
Q 011102 296 --LDPSIYAKLIL---ELGKNPDKYMLVMTLLDELGQR-------DDLN-----LSQQDC-TAIMKVGIRLQKFGVVESL 357 (493)
Q Consensus 296 --pd~~t~~~li~---~~~~~~~~~~~a~~l~~~m~~~-------~g~~-----p~~~~~-~~li~~~~~~g~~~~A~~l 357 (493)
....+|..+.+ .+... |++.+|++++....+- +... -...+. --|--.+-..|+.++|..+
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~-gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIEN-GKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 01224444433 23455 8899999998877211 0111 111111 1334466678999999999
Q ss_pred HHHHHHcCCCCCH----HHHHHHHHHHHcCCCHH-HHHHHHHH----------------------------------H--
Q 011102 358 FHWFTHSGRDPTV----VMYTTLIHSRLSEKKCR-EALTVVWN----------------------------------M-- 396 (493)
Q Consensus 358 ~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~-~A~~l~~~----------------------------------M-- 396 (493)
+....+... +|. +.-|.|+..-....-++ .++..++. |
T Consensus 247 y~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q 325 (652)
T KOG2376|consen 247 YVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQ 325 (652)
T ss_pred HHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 988876543 332 22233322111111011 01110100 0
Q ss_pred -----HH-CCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH----
Q 011102 397 -----EA-SNCLFDLPAYRVVIKLFVA--LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK---- 464 (493)
Q Consensus 397 -----~~-~gi~pd~~ty~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~---- 464 (493)
.. -+..|. ..+.+++..+.+ ......|.+++....+..-.-..+.--+++......|+++.|.+++.
T Consensus 326 ~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 326 VRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 00 122232 334445444322 22456667776666543322234556677888889999999999999
Q ss_pred ----HHHHCCCccCHHHHHHHHH
Q 011102 465 ----EAEMAGFKLDKQTVVELLQ 483 (493)
Q Consensus 465 ----~m~~~g~~pd~~t~~~Ll~ 483 (493)
...+.+..|-.+.+-..+.
T Consensus 405 ~~~ss~~~~~~~P~~V~aiv~l~ 427 (652)
T KOG2376|consen 405 SWKSSILEAKHLPGTVGAIVALY 427 (652)
T ss_pred hhhhhhhhhccChhHHHHHHHHH
Confidence 7777888887777655544
No 138
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.81 E-value=0.019 Score=47.84 Aligned_cols=54 Identities=9% Similarity=0.042 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHc
Q 011102 400 NCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK-EAGFCPTYDIYRDMIRIFMAS 453 (493)
Q Consensus 400 gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~ty~~li~~~~~~ 453 (493)
...|+..+..+++.+|+..|++..|.++.+... ..++..+..+|..|++-....
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 466888888888888888888888888888876 677777788888887765443
No 139
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.81 E-value=0.064 Score=43.58 Aligned_cols=98 Identities=9% Similarity=-0.055 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGR--DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCL--FDLPAYRVVI 412 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~--pd~~ty~~li 412 (493)
++-.+...+.+.|++++|.+.|..+.+..- ......+..+...+.+.|++++|.+.|+......-. .....+..+-
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455566667777777777777654321 111344555667777777777777777776553211 1134455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC
Q 011102 413 KLFVALNDISRAIRYFSKLKEA 434 (493)
Q Consensus 413 ~~~~~~g~~~~A~~~~~~m~~~ 434 (493)
..+.+.|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6667777777777777777654
No 140
>PLN02789 farnesyltranstransferase
Probab=96.79 E-value=0.6 Score=45.77 Aligned_cols=204 Identities=9% Similarity=-0.090 Sum_probs=122.3
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHHcCCCchhhhHHHhhc-----cCcHHHHHHHHHHHHhcC
Q 011102 204 RELGHMNLPERALQTFCWAQKQPHLFPDDRL-LASTVEVLARHHELKVPFKLENFVS-----LASKGVLEATAKGFVKGG 277 (493)
Q Consensus 204 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~~~li~~~~~~g~~~~~~~l~~~~~-----~~~~~~~~~li~~~~~~g 277 (493)
..+...++.++|+.+...+... .|+..+ |+.--..+...|. ...+++..+.. ..+..+|+.---.+.+.|
T Consensus 45 a~l~~~e~serAL~lt~~aI~l---nP~~ytaW~~R~~iL~~L~~-~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRL---NPGNYTVWHFRRLCLEALDA-DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHHcch-hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC
Confidence 3556677889999999988853 555543 4433333444442 13344444332 234557876655566666
Q ss_pred CH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc---CCH-
Q 011102 278 NL--KLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRL---QKF- 351 (493)
Q Consensus 278 ~~--~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~---g~~- 351 (493)
.. ++++.+++++.+.. .-+..+|+..--.+... |+++++++.++.+.+. +. -|...|+-....+.+. |..
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l-~~~~eeL~~~~~~I~~-d~-~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTL-GGWEDELEYCHQLLEE-DV-RNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH-CC-CchhHHHHHHHHHHhcccccccc
Confidence 63 77899998888754 24667888888888888 8999999999999876 33 3556676665555444 222
Q ss_pred ---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011102 352 ---GVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE----KKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417 (493)
Q Consensus 352 ---~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~----g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~ 417 (493)
+++.+...+..... +-|...|+-+-..+... ++..+|.+.+.+..+.++ .+......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 34555554444321 33556676666666653 233456666665444321 234445555555553
No 141
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.75 E-value=0.061 Score=53.89 Aligned_cols=128 Identities=9% Similarity=-0.024 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD-LPAYRVVIKLF 415 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd-~~ty~~li~~~ 415 (493)
-|..-+. +...|++++|+..++.+... .+-|.+-+....+.+.+.++..+|.+.++.+... .|+ ....-.+-.+|
T Consensus 309 ~YG~A~~-~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~al 384 (484)
T COG4783 309 QYGRALQ-TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHH-HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHH
Confidence 3444444 34779999999999998755 2345666667778999999999999999998875 566 34455666889
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 416 ~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
.+.|+..+|.++++...... +-|...|..|-++|...|+..+|..-..++...
T Consensus 385 l~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred HhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 99999999999999987543 458899999999999999999999988887654
No 142
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.74 E-value=0.019 Score=47.81 Aligned_cols=80 Identities=9% Similarity=0.152 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH---------------hCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 011102 263 KGVLEATAKGFVKGGNLKLAWKLLMVAK---------------DGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327 (493)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~A~~l~~~m~---------------~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~ 327 (493)
..++.++|.++++.|+++....+++..- .....|+..+..+++.+|+.+ |++..|+++.+...+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n-~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYN-GDIFSALKLVDFFSR 80 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhc-ccHHHHHHHHHHHHH
Confidence 3456666666666666666666665331 122345555555555555555 555555555555555
Q ss_pred cCCCCCCHHHHHHHHH
Q 011102 328 RDDLNLSQQDCTAIMK 343 (493)
Q Consensus 328 ~~g~~p~~~~~~~li~ 343 (493)
..++..+..+|..|+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLE 96 (126)
T ss_pred HcCCCCCHHHHHHHHH
Confidence 4455555555555544
No 143
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.68 E-value=0.014 Score=54.21 Aligned_cols=88 Identities=14% Similarity=0.107 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC----------------HHHHHH
Q 011102 333 LSQQDCTAIMKVGIRL-----QKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK----------------CREALT 391 (493)
Q Consensus 333 p~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~----------------~~~A~~ 391 (493)
-|..+|-+.+..+... +.++-....++.|.+.|+..|..+|+.||+.+-+..- -+=+.+
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 4555555555555432 5566667777788888888888888888877655432 234678
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011102 392 VVWNMEASNCLFDLPAYRVVIKLFVALND 420 (493)
Q Consensus 392 l~~~M~~~gi~pd~~ty~~li~~~~~~g~ 420 (493)
++++|...|+.||..+-..||++|++.+-
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 88888888888888888888888887764
No 144
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.66 E-value=0.32 Score=49.80 Aligned_cols=246 Identities=13% Similarity=0.039 Sum_probs=161.4
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCC-CchhhhHHHhhcc--CcHHHHHHHHHHHHhcCCHHH
Q 011102 206 LGHMNLPERALQTFCWAQKQPHLFP-DDRLLASTVEVLARHHE-LKVPFKLENFVSL--ASKGVLEATAKGFVKGGNLKL 281 (493)
Q Consensus 206 ~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~li~~~~~~g~-~~~~~~l~~~~~~--~~~~~~~~li~~~~~~g~~~~ 281 (493)
+.+.|+.-+|.-+|+....+ .| +...|-.|=..-...++ .....|+....+. .+....-+|.-.|...|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkq---dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQ---DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhh---ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 46778888888888887765 23 22233322222222221 1122233333332 256677788889999999999
Q ss_pred HHHHHHHHHhCCCC--------CCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHH
Q 011102 282 AWKLLMVAKDGGRM--------LDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGV 353 (493)
Q Consensus 282 A~~l~~~m~~~g~~--------pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 353 (493)
|++.|+.-.....+ ++...-+. ..+... ..+....++|-++....+.++|..+++.|---|--.|++++
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~-~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDS-SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCH-HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 99999887654311 01110000 222333 44566777777776655666777788888888888999999
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 011102 354 VESLFHWFTHSGRDP-TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL--PAYRVVIKLFVALNDISRAIRYFSK 430 (493)
Q Consensus 354 A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~--~ty~~li~~~~~~g~~~~A~~~~~~ 430 (493)
|.+.|+..... +| |...||-|-..++...+..+|..-+.+..+. +|+- +=||. --.|...|.+++|.+.|-+
T Consensus 449 aiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNl-gIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 449 AVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNL-GISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhh-hhhhhhhhhHHHHHHHHHH
Confidence 99999987754 45 6788999999999999999999999998874 5653 23554 4467889999999988875
Q ss_pred HH---HCC------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011102 431 LK---EAG------FCPTYDIYRDMIRIFMASGRLAKCRDV 462 (493)
Q Consensus 431 m~---~~g------~~p~~~ty~~li~~~~~~g~~~~A~~l 462 (493)
.. .++ ..++...|.+|=.++.-.++.|-+.+.
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 44 221 123456788887777777777655443
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.61 E-value=0.0054 Score=47.13 Aligned_cols=80 Identities=13% Similarity=0.088 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011102 384 KKCREALTVVWNMEASNC-LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462 (493)
Q Consensus 384 g~~~~A~~l~~~M~~~gi-~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 462 (493)
|++++|+.+++++.+..- .++...+-.+-.+|.+.|++++|..+++... .+. .+....-.+-.+|.+.|++++|.++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~-~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLK-LDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHT-HHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 455555555555544322 1122233334555555555555555555511 111 1112222334445555555555555
Q ss_pred HHH
Q 011102 463 CKE 465 (493)
Q Consensus 463 ~~~ 465 (493)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 146
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.55 E-value=0.069 Score=47.01 Aligned_cols=63 Identities=8% Similarity=-0.090 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011102 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP--TVVMYTTLIHSRLSEKKCREALTVVWNMEA 398 (493)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~ty~~li~~~~~~g~~~~A~~l~~~M~~ 398 (493)
..|..+...+...|++++|+..|++.......+ ...+|..+-..|...|+.++|++.++...+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555666666666666554332121 123555555666666666666666655544
No 147
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.49 E-value=0.038 Score=51.51 Aligned_cols=104 Identities=13% Similarity=0.077 Sum_probs=82.6
Q ss_pred CCCCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------------HHH
Q 011102 365 GRDPTVVMYTTLIHSRLSE-----KKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALND----------------ISR 423 (493)
Q Consensus 365 g~~p~~~ty~~li~~~~~~-----g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~----------------~~~ 423 (493)
|-+.|..+|-+.+..+... +.++-....++.|++-|+.-|..+|+.||+.+-|..- -+-
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C 141 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNC 141 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhH
Confidence 4467888888888877654 5677777888999999999999999999988765432 245
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 011102 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL-AKCRDVCKEAEM 468 (493)
Q Consensus 424 A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~-~~A~~l~~~m~~ 468 (493)
+.+++++|...|+.||-.+-..||+++++.|.. .+..+++--|.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 789999999999999999999999999988863 445555555543
No 148
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=1.3 Score=45.74 Aligned_cols=130 Identities=13% Similarity=0.156 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 011102 351 FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVW--------NMEASNCLFDLPAYRVVIKLFVALNDIS 422 (493)
Q Consensus 351 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~--------~M~~~gi~pd~~ty~~li~~~~~~g~~~ 422 (493)
...|.+++...-+..-.-..+.--+++.-....|+++.|.+++. ...+.+-.|-.+ .+++..+.+.++-+
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDND 434 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCc
Confidence 44555555554433222224455566677777888888888887 444555555443 44555566666555
Q ss_pred HHHHHHHHHHH----C--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 011102 423 RAIRYFSKLKE----A--GFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483 (493)
Q Consensus 423 ~A~~~~~~m~~----~--g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~ 483 (493)
.|..++.+-.. . +-.--..++.-+..--.+.|+-++|..+++++.+.. .+|..+...++.
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~ 500 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVT 500 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHH
Confidence 55555544331 0 001112233333333456788888888888887642 456666555554
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.48 E-value=0.0071 Score=46.44 Aligned_cols=79 Identities=11% Similarity=0.135 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHH
Q 011102 349 QKFGVVESLFHWFTHSGR-DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL-PAYRVVIKLFVALNDISRAIR 426 (493)
Q Consensus 349 g~~~~A~~l~~~m~~~g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~-~ty~~li~~~~~~g~~~~A~~ 426 (493)
|+++.|+.+|+++.+..- .++...+-.+-.+|.+.|++++|.++++. . ...|+. ...-.+-.+|.+.|++++|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 556666666666654422 11233344456666666666666666655 1 111222 222223444566666666666
Q ss_pred HHHH
Q 011102 427 YFSK 430 (493)
Q Consensus 427 ~~~~ 430 (493)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6553
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.46 E-value=0.071 Score=53.22 Aligned_cols=101 Identities=13% Similarity=0.068 Sum_probs=70.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 011102 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422 (493)
Q Consensus 343 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~ 422 (493)
..+...|++++|+++|++..+.. .-+...|..+-.+|.+.|++++|+..+++..+..- .+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHH
Confidence 45567788888888888877542 23566777777888888888888888888766421 24556777777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH
Q 011102 423 RAIRYFSKLKEAGFCPTYDIYRDMI 447 (493)
Q Consensus 423 ~A~~~~~~m~~~g~~p~~~ty~~li 447 (493)
+|...|++..+.. |+......++
T Consensus 88 eA~~~~~~al~l~--P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASLA--PGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHH
Confidence 8888888877533 4444444343
No 151
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.45 E-value=1.4 Score=45.91 Aligned_cols=264 Identities=17% Similarity=0.128 Sum_probs=168.9
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH------HcCCCchhhhHHHhhc----cCcHHH-H
Q 011102 198 SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLA------RHHELKVPFKLENFVS----LASKGV-L 266 (493)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~------~~g~~~~~~~l~~~~~----~~~~~~-~ 266 (493)
.|..+..++--.|+...|..+.+.......-.|+...|.-....+- +.|. ...++..... ..|... -
T Consensus 145 ~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~--~q~ale~L~~~e~~i~Dkla~~ 222 (700)
T KOG1156|consen 145 SWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGS--LQKALEHLLDNEKQIVDKLAFE 222 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHccc--HHHHHHHHHhhhhHHHHHHHHh
Confidence 7888888888899999999999999875234577777766554443 3343 2333332221 123222 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHhcCCCCHHHHHHHHHHHhhcC----------------
Q 011102 267 EATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLIL-ELGKNPDKYMLVMTLLDELGQRD---------------- 329 (493)
Q Consensus 267 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~-~~~~~~~~~~~a~~l~~~m~~~~---------------- 329 (493)
.+-.+.+.+.+++++|..++..+.... ||-.-|.-.+. ++++..+..+....+|....+..
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~ 300 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNG 300 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCc
Confidence 556677889999999999999999876 88887775544 44334133333335555554421
Q ss_pred -----------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cC----------CCCCHHH--HHHH
Q 011102 330 -----------------DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTH----SG----------RDPTVVM--YTTL 376 (493)
Q Consensus 330 -----------------g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g----------~~p~~~t--y~~l 376 (493)
|+ +.++..+.+-|-.-.+.+-.+++.-.+.. .| -.|.... +-.+
T Consensus 301 eel~~~vdkyL~~~l~Kg~---p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~l 377 (700)
T KOG1156|consen 301 EELKEIVDKYLRPLLSKGV---PSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFL 377 (700)
T ss_pred chhHHHHHHHHHHHhhcCC---CchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHH
Confidence 11 11333444433322222222222222221 11 1455544 4568
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011102 377 IHSRLSEKKCREALTVVWNMEASNCLFDLP-AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455 (493)
Q Consensus 377 i~~~~~~g~~~~A~~l~~~M~~~gi~pd~~-ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~ 455 (493)
+..|-+.|+++.|+..++....+ .|+.+ -|-+=-+.+..+|++++|..++++-.+-.. ||...-.--..-..++.+
T Consensus 378 aqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~ 454 (700)
T KOG1156|consen 378 AQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANE 454 (700)
T ss_pred HHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccc
Confidence 88999999999999999987764 45543 344445789999999999999999886554 466555455566678899
Q ss_pred HHHHHHHHHHHHHCCC
Q 011102 456 LAKCRDVCKEAEMAGF 471 (493)
Q Consensus 456 ~~~A~~l~~~m~~~g~ 471 (493)
.++|.++.....+.|.
T Consensus 455 i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 455 IEEAEEVLSKFTREGF 470 (700)
T ss_pred cHHHHHHHHHhhhccc
Confidence 9999999998888775
No 152
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.81 Score=42.63 Aligned_cols=173 Identities=8% Similarity=0.035 Sum_probs=114.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 283 WKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFT 362 (493)
Q Consensus 283 ~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 362 (493)
.++.+.+......-+...-..-...|+.. +++++|++..+... +......=+..+.|..+++-|.+.+++|.
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~-~~~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHD-GDFDEALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcC-CChHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544333333322333457777 99999999887622 12222333455667888999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 011102 363 HSGRDPTVVMYTTLIHSRLS----EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP 438 (493)
Q Consensus 363 ~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 438 (493)
+- -+-.|.+-|-+++.+ .+++.+|.-+|++|-+ ...|+..+-+....++...|++++|..++++..++.-.
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~- 239 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK- 239 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-
Confidence 32 234556656665554 4679999999999965 46788899999999999999999999999999876654
Q ss_pred CHHHHHHHHHHHHHcCCHH-HHHHHHHHHHH
Q 011102 439 TYDIYRDMIRIFMASGRLA-KCRDVCKEAEM 468 (493)
Q Consensus 439 ~~~ty~~li~~~~~~g~~~-~A~~l~~~m~~ 468 (493)
+..|...+|-.-...|.-. -..+.+.++..
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 4555555555444555543 34455666554
No 153
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.35 E-value=0.3 Score=43.11 Aligned_cols=84 Identities=7% Similarity=-0.094 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT--VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF-DLPAYRVVIK 413 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~p-d~~ty~~li~ 413 (493)
.+..+...|...|++++|...|++..+....+. ...|..+...+.+.|++++|...+.+..+. .| +...+..+-.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 445555566666677777776666654322221 345666666666677777777766665543 23 2334444444
Q ss_pred HHHHcCCHH
Q 011102 414 LFVALNDIS 422 (493)
Q Consensus 414 ~~~~~g~~~ 422 (493)
.|...|+..
T Consensus 115 ~~~~~g~~~ 123 (172)
T PRK02603 115 IYHKRGEKA 123 (172)
T ss_pred HHHHcCChH
Confidence 555555543
No 154
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.19 E-value=0.24 Score=43.78 Aligned_cols=129 Identities=7% Similarity=-0.166 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 011102 264 GVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLD--PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341 (493)
Q Consensus 264 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~l 341 (493)
..|..+...+.+.|++++|...|++..+....+. ...+..+-..+.+. |++++|...+.+.... ..-+...+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASN-GEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 3567777788888999999999998876543332 35667777778888 8999999988887764 12245556666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011102 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALND 420 (493)
Q Consensus 342 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~ 420 (493)
...|...|+...+..-++... ..+++|.+++++.... .|+. |..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~---------------------~~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE---------------------ALFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH---------------------HHHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcCc
Confidence 677777777555444333322 1256667777665542 2332 5555555555443
No 155
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.75 Score=48.69 Aligned_cols=126 Identities=12% Similarity=0.145 Sum_probs=100.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011102 318 VMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397 (493)
Q Consensus 318 a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~ 397 (493)
-+.+.+.+....|......+.+--+.-+...|+..+|.++-.+.+ -||..-|-.=+.+++..++|++-+++-+.++
T Consensus 667 Ll~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk 742 (829)
T KOG2280|consen 667 LLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK 742 (829)
T ss_pred HHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 344455555444444555566777778888999999999999998 8999999999999999999999888877664
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011102 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462 (493)
Q Consensus 398 ~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 462 (493)
. .+-|--.+.+|.+.|+.++|.+++.+.. + +.-.+.+|.+.|++.+|.++
T Consensus 743 s------PIGy~PFVe~c~~~~n~~EA~KYiprv~------~---l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 743 S------PIGYLPFVEACLKQGNKDEAKKYIPRVG------G---LQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred C------CCCchhHHHHHHhcccHHHHhhhhhccC------C---hHHHHHHHHHhccHHHHHHH
Confidence 3 4568889999999999999999997653 1 11578899999999998775
No 156
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.14 E-value=1.2 Score=43.60 Aligned_cols=86 Identities=9% Similarity=0.063 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011102 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449 (493)
Q Consensus 370 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~ 449 (493)
..+.+..|.-+...|+...|.++-.+. +| ||..-|-..|.+++..++|++-.++... . -..+-|..++++
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHH
Confidence 345667788888899999999887765 33 8999999999999999999988876543 1 234779999999
Q ss_pred HHHcCCHHHHHHHHHH
Q 011102 450 FMASGRLAKCRDVCKE 465 (493)
Q Consensus 450 ~~~~g~~~~A~~l~~~ 465 (493)
|.+.|+..+|..++..
T Consensus 247 ~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK 262 (319)
T ss_pred HHHCCCHHHHHHHHHh
Confidence 9999999999998887
No 157
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=1.2 Score=41.33 Aligned_cols=185 Identities=11% Similarity=0.105 Sum_probs=114.3
Q ss_pred cCCHHHHHHHHHHHHh---CC-CCCCHHH-HHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH-HHHHcC
Q 011102 276 GGNLKLAWKLLMVAKD---GG-RMLDPSI-YAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMK-VGIRLQ 349 (493)
Q Consensus 276 ~g~~~~A~~l~~~m~~---~g-~~pd~~t-~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~-~~~~~g 349 (493)
..+.++..+++.+|.. +| ..++..+ |.-++-+.... |+.+.|..+++.+..+ + |...-.-.|=. -+-..|
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~-~~~~lAq~C~~~L~~~--f-p~S~RV~~lkam~lEa~~ 100 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDT-GRDDLAQKCINQLRDR--F-PGSKRVGKLKAMLLEATG 100 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHh--C-CCChhHHHHHHHHHHHhh
Confidence 3556777777766653 33 4455543 44455555566 7778888888887765 3 33222111111 123457
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011102 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429 (493)
Q Consensus 350 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~ 429 (493)
++++|.++++.+.+.. +-|.++|--=+...-..|+--+|++-+.+-.+ .+.-|...|.-+-..|...|++++|.-.++
T Consensus 101 ~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred chhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 7888888888887664 44666666555556666666677777666554 355678888888888888888888888888
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 011102 430 KLKEAGFCPT-YDIYRDMIRIFMASG---RLAKCRDVCKEAEM 468 (493)
Q Consensus 430 ~m~~~g~~p~-~~ty~~li~~~~~~g---~~~~A~~l~~~m~~ 468 (493)
+|.-.. |. ...+..+-+.+--.| +.+-|.++|....+
T Consensus 179 E~ll~~--P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 179 ELLLIQ--PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 887432 33 333344444433332 45667777777665
No 158
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.10 E-value=0.026 Score=41.09 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=32.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHH
Q 011102 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVEL 481 (493)
Q Consensus 417 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~L 481 (493)
+.|++++|.++|+.+....-. |...+-.+..+|.+.|++++|.++++++.. ..||...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHH
Confidence 456666666666665543221 445555566666666666666666666554 24444444433
No 159
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.08 E-value=0.79 Score=49.05 Aligned_cols=212 Identities=12% Similarity=0.122 Sum_probs=124.0
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHH-hhccCcHHHHHHHHHHHHhcCCHHHHHHH
Q 011102 207 GHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLEN-FVSLASKGVLEATAKGFVKGGNLKLAWKL 285 (493)
Q Consensus 207 ~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~l 285 (493)
.+.|..++|+.+|.+-++. ..|=+.|-..|.|+.+-.+.. -++..-..||-.-...+-..++.+.|++.
T Consensus 811 ieLgMlEeA~~lYr~ckR~----------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY----------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH----------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHH
Confidence 4567788888888877754 222233444555444333321 12222334665556666666777777777
Q ss_pred HHHHHhCC-------------------CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 011102 286 LMVAKDGG-------------------RMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGI 346 (493)
Q Consensus 286 ~~~m~~~g-------------------~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~ 346 (493)
|++-..+. .+.|...|... ..|....|+.+.|+.++...+. |-+++...|
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WW-gqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C 949 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWW-GQYLESVGEMDAALSFYSSAKD----------YFSMVRIKC 949 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHH-HHHHhcccchHHHHHHHHHhhh----------hhhheeeEe
Confidence 76432110 11222222222 2333333777777777766543 456777788
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-------
Q 011102 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALN------- 419 (493)
Q Consensus 347 ~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g------- 419 (493)
-.|++++|-++-++ .-|...+--|-+.|-..|++.+|..+|.+.+ +|...|+.|-.++
T Consensus 950 ~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred eccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHH
Confidence 88999999888775 4477778888899999999999999998754 3444444433222
Q ss_pred --------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011102 420 --------DISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462 (493)
Q Consensus 420 --------~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 462 (493)
+.-.|-++|++. |.. +.--+..|-++|.+.+|+++
T Consensus 1015 lal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALel 1057 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALEL 1057 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHH
Confidence 333444555443 211 23344557788888887765
No 160
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.00 E-value=2 Score=43.26 Aligned_cols=81 Identities=14% Similarity=-0.014 Sum_probs=57.2
Q ss_pred HHHHhhccCCCCHHHHHHHHhhhccc----C-cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc
Q 011102 171 ARDIKGLDSHKDVAEVLDKCGRFLRK----G-SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARH 245 (493)
Q Consensus 171 ~~~l~~~~~~~~~~~a~~~~~~m~~~----~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~ 245 (493)
.+....--++..+..|..+|++.... + .|---+..=-..|++..|.++|+.-. ...||...|.+.|+.=.+-
T Consensus 111 lkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~---~w~P~eqaW~sfI~fElRy 187 (677)
T KOG1915|consen 111 LKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWM---EWEPDEQAWLSFIKFELRY 187 (677)
T ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHh
Confidence 33445556677888888888854332 2 33333444445688999999997665 4589999999999998888
Q ss_pred CCCchhhhH
Q 011102 246 HELKVPFKL 254 (493)
Q Consensus 246 g~~~~~~~l 254 (493)
+.++.+..+
T Consensus 188 keieraR~I 196 (677)
T KOG1915|consen 188 KEIERARSI 196 (677)
T ss_pred hHHHHHHHH
Confidence 887766665
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.98 E-value=0.19 Score=44.17 Aligned_cols=113 Identities=13% Similarity=0.058 Sum_probs=80.1
Q ss_pred HHHHHHHHH-HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011102 353 VVESLFHWF-THSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF--DLPAYRVVIKLFVALNDISRAIRYFS 429 (493)
Q Consensus 353 ~A~~l~~~m-~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~p--d~~ty~~li~~~~~~g~~~~A~~~~~ 429 (493)
.+...+..+ ...+..--...|..+...+...|++++|+..|++.......+ ...+|..+-..+.+.|+.++|...++
T Consensus 17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~ 96 (168)
T CHL00033 17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF 96 (168)
T ss_pred cchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334444444 233333345677888888889999999999999987653222 23578888889999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHH-------HcCCHHHHHHHHHHH
Q 011102 430 KLKEAGFCPTYDIYRDMIRIFM-------ASGRLAKCRDVCKEA 466 (493)
Q Consensus 430 ~m~~~g~~p~~~ty~~li~~~~-------~~g~~~~A~~l~~~m 466 (493)
...... +....++..+...+. ..|++++|...+++-
T Consensus 97 ~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 97 QALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 887542 223456666666776 788888776666654
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.97 E-value=1.1 Score=43.04 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAK 290 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~ 290 (493)
.|.-.-+.|-..|++++|.+.|.+..
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHH
Confidence 35556666666677777776666553
No 163
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.95 E-value=3.2 Score=45.09 Aligned_cols=216 Identities=11% Similarity=0.034 Sum_probs=130.0
Q ss_pred CCCHHHHHHHHhhhcccC---cHHHHHHHH--HhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhH
Q 011102 180 HKDVAEVLDKCGRFLRKG---SLSFTVREL--GHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKL 254 (493)
Q Consensus 180 ~~~~~~a~~~~~~m~~~~---~~~~li~~~--~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l 254 (493)
.+++..|+...++...+. .|..++.++ .+.|+.++|..+++..... +.. |..|...+...|-+.++.+ +++
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-~~~-D~~tLq~l~~~y~d~~~~d--~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGL-KGT-DDLTLQFLQNVYRDLGKLD--EAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC-CCC-chHHHHHHHHHHHHHhhhh--HHH
Confidence 466777777777666553 677777765 5789999999998887654 333 8889999999999999854 444
Q ss_pred HHhhc----cCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCC---------HHHHHHH
Q 011102 255 ENFVS----LASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDK---------YMLVMTL 321 (493)
Q Consensus 255 ~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~---------~~~a~~l 321 (493)
+.|.. -|+......+..+|.+.+++.+-.++=-+|.+ ...-....|=++|+-+.+.-.. ..-|...
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 44443 45666667788888888887664444434433 1223444444555544433111 1244555
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 011102 322 LDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLF-HWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN 400 (493)
Q Consensus 322 ~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~-~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g 400 (493)
++.+.+.+|-.-+..-.-.-...+-..|++++|++++ ....+.-..-+...-|--+.-+...++|.+..++-.++...|
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 5555555332222222222234445566677777777 334433333444445566666666777777766666666554
No 164
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.94 E-value=0.83 Score=46.96 Aligned_cols=240 Identities=12% Similarity=0.032 Sum_probs=154.2
Q ss_pred ccCCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHcCCCch
Q 011102 177 LDSHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDD-RLLASTVEVLARHHELKV 250 (493)
Q Consensus 177 ~~~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~li~~~~~~g~~~~ 250 (493)
+-+.|++.+|.-.|+....++ .|--|=..-+.+++-..|+..+++..+ +.|+. ...-.|.-.|...|. .
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~---LdP~NleaLmaLAVSytNeg~--q 369 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE---LDPTNLEALMALAVSYTNEGL--Q 369 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh---cCCccHHHHHHHHHHHhhhhh--H
Confidence 345688999988888665554 676666667777777788888888764 45543 345555555555554 3
Q ss_pred hhhHHHhh---ccCcHHHHHHHH---------HHHHhcCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHhcCCCCHHH
Q 011102 251 PFKLENFV---SLASKGVLEATA---------KGFVKGGNLKLAWKLLMVA-KDGGRMLDPSIYAKLILELGKNPDKYML 317 (493)
Q Consensus 251 ~~~l~~~~---~~~~~~~~~~li---------~~~~~~g~~~~A~~l~~~m-~~~g~~pd~~t~~~li~~~~~~~~~~~~ 317 (493)
..++..+. ...-...|...- ..+.....+....++|-++ .+.+.++|+.....|=--|.-. |.+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls-~efdr 448 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS-GEFDR 448 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc-hHHHH
Confidence 33433222 111111110000 1223333455566666555 4566667888887776677777 99999
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011102 318 VMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT-VVMYTTLIHSRLSEKKCREALTVVWNM 396 (493)
Q Consensus 318 a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M 396 (493)
|...|+..... -.-|...||-|-..++...+.++|..-|++-.+. +|+ +.+..-|--+|...|.+++|.+.|=+.
T Consensus 449 aiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 449 AVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 99999998764 2335678999999999999999999999998765 565 334444555688999999999887664
Q ss_pred ---HHC------CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011102 397 ---EAS------NCLFDLPAYRVVIKLFVALNDISRAIR 426 (493)
Q Consensus 397 ---~~~------gi~pd~~ty~~li~~~~~~g~~~~A~~ 426 (493)
.++ +..++...|.+|=.++.-.++.|.+.+
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 333 122344567766666666666554433
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.88 E-value=0.53 Score=49.37 Aligned_cols=63 Identities=11% Similarity=0.048 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 404 d~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
+...|.++--.....|++++|...+++..+.. |+...|..+-..+...|+.++|.+.+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33555555444445677777777777776544 5667777777777777777777777766654
No 166
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.80 E-value=0.05 Score=39.56 Aligned_cols=49 Identities=10% Similarity=0.007 Sum_probs=19.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011102 348 LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397 (493)
Q Consensus 348 ~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~ 397 (493)
.|++++|.++|++..+.. +-+...+-.+...|.+.|++++|.++++.+.
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444443221 1133333344444444444444444444433
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.78 E-value=0.25 Score=49.27 Aligned_cols=101 Identities=10% Similarity=-0.024 Sum_probs=75.4
Q ss_pred HHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 011102 306 LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK 385 (493)
Q Consensus 306 ~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 385 (493)
..+... |++++|+++|.+..+. -.-+...|..+-.+|.+.|++++|+..++...+.. ..+...|..+-.+|...|+
T Consensus 10 ~~a~~~-~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 10 KEAFVD-DDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHc-CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 344556 8899999999988765 22356677778888889999999999998887642 2356778888888899999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011102 386 CREALTVVWNMEASNCLFDLPAYRVVI 412 (493)
Q Consensus 386 ~~~A~~l~~~M~~~gi~pd~~ty~~li 412 (493)
+++|...|++..+. .|+.......+
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 99999999887764 45555544443
No 168
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.77 E-value=3.1 Score=43.56 Aligned_cols=193 Identities=10% Similarity=0.006 Sum_probs=117.4
Q ss_pred CCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHcCCCchh-
Q 011102 179 SHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPD-DRLLASTVEVLARHHELKVP- 251 (493)
Q Consensus 179 ~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~li~~~~~~g~~~~~- 251 (493)
..|+-++|.+....-.+.+ .|.++=-.+-...++++|+..|...... .|| ...|.-+--.-...++++..
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~---~~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI---EKDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHHHhhhhHH
Confidence 3477777777766544433 4554444445567899999999888743 344 33443332222333333211
Q ss_pred hhH-HHhhc-cCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHH------HhcCCCCHHHHHHHH
Q 011102 252 FKL-ENFVS-LASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGG-RMLDPSIYAKLILE------LGKNPDKYMLVMTLL 322 (493)
Q Consensus 252 ~~l-~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~li~~------~~~~~~~~~~a~~l~ 322 (493)
... ..+.. ......|..+.-++.-.|+...|..++++..+.- -.|+...|.....- ..+. |..++|++-+
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~-g~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEA-GSLQKALEHL 208 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHc-ccHHHHHHHH
Confidence 111 11222 2245578899999999999999999999998765 35777776644332 3455 6677777766
Q ss_pred HHHhhcCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011102 323 DELGQRDDLNLSQQD-CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSR 380 (493)
Q Consensus 323 ~~m~~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~ 380 (493)
..-+.. + .|... --+--+-+.+.+++++|..+|..+... .||.+-|+-.+..+
T Consensus 209 ~~~e~~--i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 209 LDNEKQ--I-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKA 262 (700)
T ss_pred HhhhhH--H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHH
Confidence 655432 2 23222 234456677888888888888888765 67776666554433
No 169
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=2.5 Score=41.92 Aligned_cols=134 Identities=13% Similarity=0.079 Sum_probs=77.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHH-HHcCC
Q 011102 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVV-IKLF-VALND 420 (493)
Q Consensus 343 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~l-i~~~-~~~g~ 420 (493)
..+...|++++|.-.|+.-+... +-+..+|.-|+.+|...|++.+|.-+-+..... +.-+..+.+.+ -..| -...-
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~ 419 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRM 419 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchh
Confidence 45556677777777777654321 235677788888888888777777665553221 11122332222 0111 11122
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 011102 421 ISRAIRYFSKLKEAGFCPTY-DIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482 (493)
Q Consensus 421 ~~~A~~~~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll 482 (493)
-++|.++++.-.. +.|+- ..-+.+...+...|+.+++..+++.-.. ..||...-+.|=
T Consensus 420 rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lg 478 (564)
T KOG1174|consen 420 REKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLG 478 (564)
T ss_pred HHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHH
Confidence 3566666665442 33443 3345666778889999999999988765 466666555443
No 170
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.66 E-value=0.091 Score=44.96 Aligned_cols=72 Identities=19% Similarity=0.245 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCccCHHHHH
Q 011102 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE-----MAGFKLDKQTVV 479 (493)
Q Consensus 407 ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~pd~~t~~ 479 (493)
+...++..+...|++++|.++.+.+....- -|...|..+|.+|...|+..+|.++|+.+. +.|+.|+..|-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 345566666777777777777777775432 366677777888888888877777777764 347777776643
No 171
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.63 E-value=1.8 Score=41.91 Aligned_cols=127 Identities=11% Similarity=0.154 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHcCCC
Q 011102 315 YMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR--LQ----KFGVVESLFHWFTHSGR---DPTVVMYTTLIHSRLSEKK 385 (493)
Q Consensus 315 ~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~--~g----~~~~A~~l~~~m~~~g~---~p~~~ty~~li~~~~~~g~ 385 (493)
+.+...+++.|.+. |++-+..+|-+..-.... .. ...+|..+|+.|++... .++-+.+.+|+.. ...+
T Consensus 78 ~~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 34455555566655 565555555442222222 11 14456666666665421 2344445555443 2222
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcC-C--HHHHHHHHHHHHHCCCCCCHHHHH
Q 011102 386 ----CREALTVVWNMEASNCLFDLP-AYRVVIKLFVALN-D--ISRAIRYFSKLKEAGFCPTYDIYR 444 (493)
Q Consensus 386 ----~~~A~~l~~~M~~~gi~pd~~-ty~~li~~~~~~g-~--~~~A~~~~~~m~~~g~~p~~~ty~ 444 (493)
.++++..++.+.+.|+..+-. -+.+-|-+++... . +..+.++++.+.+.|+++....|.
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccccc
Confidence 244555566665555543321 2222222222211 1 335556666666666666655554
No 172
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.62 E-value=0.9 Score=46.42 Aligned_cols=129 Identities=12% Similarity=0.025 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRML-DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMK 343 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~ 343 (493)
+|...|+.-.+..-++.|..+|.+..+.+..+ ++..++++|.-+|.. +.+-|.++|+-=.+. +.-+..--...++
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk--D~~~AfrIFeLGLkk--f~d~p~yv~~Yld 443 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK--DKETAFRIFELGLKK--FGDSPEYVLKYLD 443 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC--ChhHHHHHHHHHHHh--cCCChHHHHHHHH
Confidence 34555555555555555666666665555555 555555555555543 445555555543332 1122222344455
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011102 344 VGIRLQKFGVVESLFHWFTHSGRDPT--VVMYTTLIHSRLSEKKCREALTVVWNME 397 (493)
Q Consensus 344 ~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~M~ 397 (493)
-+...++-..|..+|+.....+..|| ...|..+|.-=..-|++..+.++-+++.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 55555555555566655555544433 2455556555555566555555555543
No 173
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.60 E-value=0.67 Score=38.19 Aligned_cols=86 Identities=13% Similarity=0.023 Sum_probs=42.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHH-HHHHHHHHHH
Q 011102 344 VGIRLQKFGVVESLFHWFTHSGRDPT--VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD---LPA-YRVVIKLFVA 417 (493)
Q Consensus 344 ~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd---~~t-y~~li~~~~~ 417 (493)
++-..|+.++|..+|++-.+.|.... ...+-.+-++|...|+.++|+.+|++..... |+ ... ...+-.++..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHH
Confidence 34445666666666666555554443 2334445555556666666666666554321 22 111 1111224455
Q ss_pred cCCHHHHHHHHHHH
Q 011102 418 LNDISRAIRYFSKL 431 (493)
Q Consensus 418 ~g~~~~A~~~~~~m 431 (493)
.|+.++|...+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 56666666555443
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.40 E-value=0.79 Score=37.76 Aligned_cols=55 Identities=20% Similarity=0.089 Sum_probs=28.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 011102 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPS--IYAKLILELGKNPDKYMLVMTLLDELGQ 327 (493)
Q Consensus 272 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~li~~~~~~~~~~~~a~~l~~~m~~ 327 (493)
++-..|+.++|..+|++....|...+.. .+-.+-..+-.. |++++|..+|++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L-G~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNL-GRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 3445566666666666666665443321 222333344444 666666666665544
No 175
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.14 E-value=0.15 Score=43.59 Aligned_cols=68 Identities=24% Similarity=0.385 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 011102 374 TTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK-----EAGFCPTYDI 442 (493)
Q Consensus 374 ~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~t 442 (493)
..++..+...|++++|.++...+..... -|...|..+|.+|...|+..+|.++|+.+. +.|+.|+..|
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4444444555555555555555444321 244455555555555555555555555443 3455555443
No 176
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.11 E-value=2.8 Score=38.92 Aligned_cols=156 Identities=11% Similarity=0.103 Sum_probs=116.7
Q ss_pred CCHHHHHHHHHHHhhcC--C-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCC
Q 011102 313 DKYMLVMTLLDELGQRD--D-LNLSQQ-DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTV----VMYTTLIHSRLSEK 384 (493)
Q Consensus 313 ~~~~~a~~l~~~m~~~~--g-~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g 384 (493)
.+.++.++++.++.... | ..++.. .|-.++-+...+|+.+.|..+++.+...- |.. ..+..++ -..|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~l---Ea~~ 100 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLL---EATG 100 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHH---HHhh
Confidence 46788888888876531 3 445543 45666777788999999999999987653 332 2233333 3468
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011102 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCK 464 (493)
Q Consensus 385 ~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~ 464 (493)
++++|+++++...+.. +-|.++|--=|...-..|+--+|.+-+.+..+. +.-|...|.-+-+.|...|++++|.-.++
T Consensus 101 ~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred chhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 8999999999998876 456778877777777778888888888887753 55699999999999999999999999999
Q ss_pred HHHHCCCccCHHH
Q 011102 465 EAEMAGFKLDKQT 477 (493)
Q Consensus 465 ~m~~~g~~pd~~t 477 (493)
+|.- +.|-...
T Consensus 179 E~ll--~~P~n~l 189 (289)
T KOG3060|consen 179 ELLL--IQPFNPL 189 (289)
T ss_pred HHHH--cCCCcHH
Confidence 9975 4454333
No 177
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.09 E-value=2.6 Score=44.03 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=26.7
Q ss_pred cHHHHHHHHHhCCChH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhh
Q 011102 198 SLSFTVRELGHMNLPE--RALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPF 252 (493)
Q Consensus 198 ~~~~li~~~~~~g~~~--~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~ 252 (493)
.+++.=.+|.+-.+.. +-+.=+++|+.+ |-.||..... ..|+-.|++..+.
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~r-ge~P~~iLlA---~~~Ay~gKF~EAA 652 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKR-GETPNDLLLA---DVFAYQGKFHEAA 652 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhc-CCCchHHHHH---HHHHhhhhHHHHH
Confidence 4555556666655433 333334566665 7778765433 3344455544433
No 178
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=3 Score=38.92 Aligned_cols=145 Identities=9% Similarity=0.052 Sum_probs=97.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---
Q 011102 302 AKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIH--- 378 (493)
Q Consensus 302 ~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~--- 378 (493)
+.++..+.-. +.+.-...++++..+. .-..+++....|...-.+.|+.+.|...|++..+..-+.|..+.+.++.
T Consensus 181 y~~~~~llG~-kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 181 YSMANCLLGM-KEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHhcc-hhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455555555 6777777888888776 5566778888888888889999999999998876655666666666654
Q ss_pred --HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011102 379 --SRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451 (493)
Q Consensus 379 --~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 451 (493)
.|.-.+++.+|...+.+.....- -|.+.-|.=--+..-.|+..+|.+.++.|+.. .|...+-++++--++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~nL~ 330 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFNLT 330 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHHHH
Confidence 34445678888888877665421 23333343333333457889999999888754 366666565554443
No 179
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.04 E-value=1.4 Score=37.20 Aligned_cols=84 Identities=11% Similarity=-0.019 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 011102 340 AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALN 419 (493)
Q Consensus 340 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g 419 (493)
.+|..+.+.+........++.+...+. .+...+|.+|..|++.+ ..+.++.+.. ..+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 344444444444445555544444331 34444455555554432 2222233221 112222333555555555
Q ss_pred CHHHHHHHHHHH
Q 011102 420 DISRAIRYFSKL 431 (493)
Q Consensus 420 ~~~~A~~~~~~m 431 (493)
.++++..++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555444
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.03 E-value=3.1 Score=39.03 Aligned_cols=175 Identities=14% Similarity=0.044 Sum_probs=108.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HH---HHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 011102 270 AKGFVKGGNLKLAWKLLMVAKDGGRMLDPS-IY---AKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVG 345 (493)
Q Consensus 270 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~---~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~ 345 (493)
...+.+.|++++|.+.|+++...- |+.. .- -.+..++.+. +++++|...+++..+...-.|+ ..|...+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~-~~y~~A~~~~e~fi~~~P~~~~-~~~a~Y~~g~ 114 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKN-ADLPLAQAAIDRFIRLNPTHPN-IDYVLYMRGL 114 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCcCCCc-hHHHHHHHHH
Confidence 334456789999999999988754 3332 22 1345667788 8999999999888766323333 2444444443
Q ss_pred HH--cC---------------CH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 011102 346 IR--LQ---------------KF---GVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405 (493)
Q Consensus 346 ~~--~g---------------~~---~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~ 405 (493)
+. .+ +. .+|.+. +..+|+-|=...-..+|...+..++.. --.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~---------------~~~li~~yP~S~ya~~A~~rl~~l~~~---la~ 176 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRD---------------FSKLVRGYPNSQYTTDATKRLVFLKDR---LAK 176 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHH---------------HHHHHHHCcCChhHHHHHHHHHHHHHH---HHH
Confidence 31 10 11 122233 334444444445566666655555432 111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 406 PAYRVVIKLFVALNDISRAIRYFSKLKE--AGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 406 ~ty~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
.- -.+..-|.+.|.+..|..-|+.+.+ .+........-.++.+|...|..++|.+....+.
T Consensus 177 ~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11 1455668899999999999999884 2333445666788899999999999988776654
No 181
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.86 E-value=1.3 Score=36.80 Aligned_cols=139 Identities=12% Similarity=0.094 Sum_probs=78.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 011102 275 KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVV 354 (493)
Q Consensus 275 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 354 (493)
-.|.+++..++..+...+ -+..-||.+|.-.... -+-+...+.++.+.+-.++ . .+|++...
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDa-a~C~yvv~~LdsIGkiFDi----s----------~C~NlKrV 75 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDA-ADCDYVVETLDSIGKIFDI----S----------KCGNLKRV 75 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH---HHHHHHHHHHHGGGS-G----G----------G-S-THHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchh-hchhHHHHHHHHHhhhcCc----h----------hhcchHHH
Confidence 357788888888887765 3666777777766666 5666677777777554222 1 22333333
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434 (493)
Q Consensus 355 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~ 434 (493)
...+-.+- .+..-...-++.+...|+-+.-.++..++.+ +-.++....-.+-.||.+.|+..++.+++.+.-+.
T Consensus 76 i~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 76 IECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33322221 1223345566677777777777777777654 33466666677777888888888888888777777
Q ss_pred CCC
Q 011102 435 GFC 437 (493)
Q Consensus 435 g~~ 437 (493)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 764
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.85 E-value=2.7 Score=44.15 Aligned_cols=146 Identities=12% Similarity=0.026 Sum_probs=95.2
Q ss_pred CCCCCCHHHHHHHHHHHhcC----CCCHHHHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHHc--------CCHHHHHHHH
Q 011102 292 GGRMLDPSIYAKLILELGKN----PDKYMLVMTLLDELGQRDDLNLSQ-QDCTAIMKVGIRL--------QKFGVVESLF 358 (493)
Q Consensus 292 ~g~~pd~~t~~~li~~~~~~----~~~~~~a~~l~~~m~~~~g~~p~~-~~~~~li~~~~~~--------g~~~~A~~l~ 358 (493)
.+...|...|...+.+.... .+....|..+|++..+. .|+- ..|..+..+|... .++..+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 44567888888888875442 13467888898888764 3553 3333332323221 1223334444
Q ss_pred HHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 011102 359 HWFTHS-GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC 437 (493)
Q Consensus 359 ~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 437 (493)
...... ....+...|.++--.+...|++++|...+++..+.+ |+...|..+-..+...|+.++|.+.+++-... .
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~ 483 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--R 483 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 432222 233455777777666667799999999999988765 68888999999999999999999999887643 3
Q ss_pred CCHHHHH
Q 011102 438 PTYDIYR 444 (493)
Q Consensus 438 p~~~ty~ 444 (493)
|...||.
T Consensus 484 P~~pt~~ 490 (517)
T PRK10153 484 PGENTLY 490 (517)
T ss_pred CCCchHH
Confidence 5544543
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.83 E-value=0.16 Score=36.48 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=34.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 413 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
..+.+.|++++|...|+...+..- -+...+..+-..+...|++++|..+|++..+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666777777777777665441 2555566666666677777777777776654
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.71 E-value=0.15 Score=36.61 Aligned_cols=53 Identities=9% Similarity=-0.046 Sum_probs=24.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011102 344 VGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397 (493)
Q Consensus 344 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~ 397 (493)
.+.+.|++++|.+.|++..+.. +-+...+..+-..+...|++++|...|++..
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455555555555554332 1133444444445555555555555555443
No 185
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.63 E-value=5 Score=42.47 Aligned_cols=260 Identities=10% Similarity=-0.000 Sum_probs=118.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHcCCCchhhh-H-HHhhccC----cHHHHHHHHHH
Q 011102 203 VRELGHMNLPERALQTFCWAQKQPHLFP----DDRLLASTVEVLARHHELKVPFK-L-ENFVSLA----SKGVLEATAKG 272 (493)
Q Consensus 203 i~~~~~~g~~~~A~~l~~~m~~~~g~~p----d~~t~~~li~~~~~~g~~~~~~~-l-~~~~~~~----~~~~~~~li~~ 272 (493)
|++| -|++++|.++|-+|.++ .+.. ..--|-.+++.+-. |.-+.... + ..+..+. +...|..-...
T Consensus 743 i~~~--~g~feeaek~yld~drr-DLAielr~klgDwfrV~qL~r~-g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 743 ISAF--YGEFEEAEKLYLDADRR-DLAIELRKKLGDWFRVYQLIRN-GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred Hhhh--hcchhHhhhhhhccchh-hhhHHHHHhhhhHHHHHHHHHc-cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 37888999998888765 2211 11123333333222 21111111 1 0111111 22345555566
Q ss_pred HHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 011102 273 FVKGGNLKLAWKLLMVAKDGG--------RMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKV 344 (493)
Q Consensus 273 ~~~~g~~~~A~~l~~~m~~~g--------~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~ 344 (493)
|.++|+.+.-.+.+-....-| ++-|....-.+-.++.+. |.-++|.+.|-+-.. | -+.++.
T Consensus 819 Y~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~sv-GMC~qAV~a~Lr~s~-----p-----kaAv~t 887 (1189)
T KOG2041|consen 819 YSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSV-GMCDQAVEAYLRRSL-----P-----KAAVHT 887 (1189)
T ss_pred HHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhh-chHHHHHHHHHhccC-----c-----HHHHHH
Confidence 666665554443333322211 222222333444555555 555555555433211 1 234455
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--------------HHHHHHHcCCCHHHHHHHHHHHHH----CCCCCCHH
Q 011102 345 GIRLQKFGVVESLFHWFTHSGRDPTVVMYT--------------TLIHSRLSEKKCREALTVVWNMEA----SNCLFDLP 406 (493)
Q Consensus 345 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~--------------~li~~~~~~g~~~~A~~l~~~M~~----~gi~pd~~ 406 (493)
|...+++.+|.++-+... -|.+.|.- --|.-+.++|+.-+|-+++.+|.+ ++.+|-..
T Consensus 888 Cv~LnQW~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~ 963 (1189)
T KOG2041|consen 888 CVELNQWGEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRL 963 (1189)
T ss_pred HHHHHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHH
Confidence 555566666666555443 34333321 123445566777777777777754 23433221
Q ss_pred H----HHHHH-HHH----------HHcCCHHHHHHHHHHHHH---CCCC------CCHHHHHHHHHHHHHcCCHHHHHHH
Q 011102 407 A----YRVVI-KLF----------VALNDISRAIRYFSKLKE---AGFC------PTYDIYRDMIRIFMASGRLAKCRDV 462 (493)
Q Consensus 407 t----y~~li-~~~----------~~~g~~~~A~~~~~~m~~---~g~~------p~~~ty~~li~~~~~~g~~~~A~~l 462 (493)
- ..+|+ .-+ -+.|..++|..++++-.. ..+. ....+|-+|.+--...|.++.|++.
T Consensus 964 KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~T 1043 (1189)
T KOG2041|consen 964 KKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQT 1043 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 1 11211 111 134566666665544321 0011 1233344444555667888888775
Q ss_pred HHHHHH-CCCccCHHHHHHH
Q 011102 463 CKEAEM-AGFKLDKQTVVEL 481 (493)
Q Consensus 463 ~~~m~~-~g~~pd~~t~~~L 481 (493)
--.+.+ ..+-|....|+.|
T Consensus 1044 al~L~DYEd~lpP~eiySll 1063 (1189)
T KOG2041|consen 1044 ALILSDYEDFLPPAEIYSLL 1063 (1189)
T ss_pred HhhhccHhhcCCHHHHHHHH
Confidence 433332 2356666666554
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.62 E-value=0.66 Score=44.06 Aligned_cols=96 Identities=13% Similarity=-0.006 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC--CCCHHHHH
Q 011102 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTV----VMYTTLIHSRLSEKKCREALTVVWNMEASNC--LFDLPAYR 409 (493)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi--~pd~~ty~ 409 (493)
..|...+.-+.+.|++++|...|+.+.+. -|+. ..+-.+-..|...|++++|...|+.+.+.-- ......+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555555566777777777776644 2322 3455666666666777777777666654310 00112223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 410 VVIKLFVALNDISRAIRYFSKLKE 433 (493)
Q Consensus 410 ~li~~~~~~g~~~~A~~~~~~m~~ 433 (493)
.+...+...|+.++|..+|+.+.+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333445566666666666666553
No 187
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.35 E-value=3.3 Score=41.58 Aligned_cols=146 Identities=12% Similarity=0.055 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHH-HHH
Q 011102 264 GVLEATAKGFVKGGNLKLAWKLLMVAKDGG-RMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDC-TAI 341 (493)
Q Consensus 264 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~-~~l 341 (493)
.+|...|+.-.+..-++.|..+|-+..+.| +.+++..++++|.-++.. +...|..+|+-=... + ||...| +-.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~--d~~ta~~ifelGl~~--f-~d~~~y~~ky 472 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG--DRATAYNIFELGLLK--F-PDSTLYKEKY 472 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcC--CcchHHHHHHHHHHh--C-CCchHHHHHH
Confidence 468889999888888999999999999999 778999999999988874 678889999874443 2 444444 566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011102 342 MKVGIRLQKFGVVESLFHWFTHSGRDPT--VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA 417 (493)
Q Consensus 342 i~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~ 417 (493)
+.-+.+.++-+.|..+|+.-.++ +..+ ...|..+|+--..-|++..|..+=+.|.+. .|-..+-....+.|+-
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~i 547 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHhh
Confidence 77888899999999999954321 1122 467899999888999999998888888763 4555555555555543
No 188
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.32 E-value=2.8 Score=35.32 Aligned_cols=124 Identities=10% Similarity=0.106 Sum_probs=59.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 011102 303 KLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS 382 (493)
Q Consensus 303 ~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~ 382 (493)
.+|..+.+. +....+..+++.+... +. .+...+|.+|..|++... ++..+.+.. ..+......+++.|.+
T Consensus 12 ~vv~~~~~~-~~~~~l~~yLe~~~~~-~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 12 EVVELFEKR-NLLEELIPYLESALKL-NS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHhC-CcHHHHHHHHHHHHcc-Cc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 445555555 5566666666665554 32 455566666666665432 233333331 1222223335555555
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011102 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL-NDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451 (493)
Q Consensus 383 ~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 451 (493)
.+.++++.-++..+.. |...+..+.+. ++.+.|.+++.+- -+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 5556666655554422 22222222223 5566666655541 24445655555543
No 189
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.23 E-value=4.5 Score=39.15 Aligned_cols=138 Identities=10% Similarity=0.067 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011102 212 PERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKD 291 (493)
Q Consensus 212 ~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 291 (493)
+++.+++++.|.+. |++-+.++|-+..-.......-+... ....|..+|+.|++
T Consensus 78 ~~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~-------------------------~~~ra~~iy~~mKk 131 (297)
T PF13170_consen 78 FKEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDE-------------------------IIQRAKEIYKEMKK 131 (297)
T ss_pred HHHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHH-------------------------HHHHHHHHHHHHHH
Confidence 34567788888887 89888887776444443322111111 24789999999998
Q ss_pred CC---CCCCHHHHHHHHHHHhcCCC-CHHHHHHHHHHHhhcCCCCCCHH-HHHHHHHHHHHcCC---HHHHHHHHHHHHH
Q 011102 292 GG---RMLDPSIYAKLILELGKNPD-KYMLVMTLLDELGQRDDLNLSQQ-DCTAIMKVGIRLQK---FGVVESLFHWFTH 363 (493)
Q Consensus 292 ~g---~~pd~~t~~~li~~~~~~~~-~~~~a~~l~~~m~~~~g~~p~~~-~~~~li~~~~~~g~---~~~A~~l~~~m~~ 363 (493)
.. ..++...+..++..-..... -.+.+..+++.+.+. |+..+.. -+.+-|-+++.... +..+.++++.+++
T Consensus 132 ~H~fLTs~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~-~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~ 210 (297)
T PF13170_consen 132 KHPFLTSPEDYPFAALLAMTSEDVEELAERMEQCYQKLADA-GFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK 210 (297)
T ss_pred hCccccCccchhHHHHHhcccccHHHHHHHHHHHHHHHHHh-CCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 76 34667778888766222211 135667777777775 5544322 23333333332211 4577788888888
Q ss_pred cCCCCCHHHHHHH
Q 011102 364 SGRDPTVVMYTTL 376 (493)
Q Consensus 364 ~g~~p~~~ty~~l 376 (493)
.|+++....|.++
T Consensus 211 ~~~kik~~~yp~l 223 (297)
T PF13170_consen 211 NGVKIKYMHYPTL 223 (297)
T ss_pred cCCccccccccHH
Confidence 8888777776654
No 190
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.21 E-value=2.2 Score=35.46 Aligned_cols=67 Identities=13% Similarity=0.186 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc
Q 011102 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472 (493)
Q Consensus 405 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 472 (493)
..-....++.+.++|+-|.-.++..++.+ .-+++....-.+-.||.+.|+..++.+++.+..++|++
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34456778888999999999999999875 33477888888999999999999999999999999975
No 191
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.10 E-value=1.5 Score=43.79 Aligned_cols=127 Identities=16% Similarity=0.169 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHCCCCCCHHHH-HHH
Q 011102 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSG-RDPTVVMYTTLIHSRLSEKKCREALTVVWN-MEASNCLFDLPAY-RVV 411 (493)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~l~~~-M~~~gi~pd~~ty-~~l 411 (493)
..+|...|++-.|..-++.|..+|-+..+.| +.+++..|+++|.-+|. |+..-|.++|+- |+. -||...| +-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3467788898889999999999999999988 77999999999998876 677889999986 444 3666554 456
Q ss_pred HHHHHHcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 412 IKLFVALNDISRAIRYFSKLK----EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 412 i~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
+.-+..-++-+.|..+|+.-. +... ...|..+|+-=..-|+...|..+=+.|.+
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~---k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQL---KRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhh---hHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 677788899999999999443 3222 45899999999999999888887777754
No 192
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.02 E-value=1.6 Score=37.67 Aligned_cols=88 Identities=15% Similarity=0.125 Sum_probs=55.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011102 342 MKVGIRLQKFGVVESLFHWFTHSGRDP-TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALND 420 (493)
Q Consensus 342 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~ 420 (493)
-.-+...|++++|..+|+-+... .| +..-|-.|--.+-..|++.+|++.+........ -|...+-.+=.++.+.|+
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCC
Confidence 33445667777777777766533 33 344455555666666777777777777665543 345566666667777777
Q ss_pred HHHHHHHHHHHH
Q 011102 421 ISRAIRYFSKLK 432 (493)
Q Consensus 421 ~~~A~~~~~~m~ 432 (493)
.+.|.+-|+.-.
T Consensus 119 ~~~A~~aF~~Ai 130 (157)
T PRK15363 119 VCYAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHHHH
Confidence 777777776554
No 193
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.90 E-value=1.1 Score=38.60 Aligned_cols=85 Identities=8% Similarity=-0.066 Sum_probs=36.7
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 011102 380 RLSEKKCREALTVVWNMEASNCLFDLP-AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAK 458 (493)
Q Consensus 380 ~~~~g~~~~A~~l~~~M~~~gi~pd~~-ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 458 (493)
+...|++++|.++|+-...- .|... -|-.|=-.|-..|++++|...|........ -|...+-.+-.++...|+.+.
T Consensus 45 ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHH
Confidence 34445555555555443332 12222 222222333334455555555554443332 234444444444555555555
Q ss_pred HHHHHHHHH
Q 011102 459 CRDVCKEAE 467 (493)
Q Consensus 459 A~~l~~~m~ 467 (493)
|.+-|+...
T Consensus 122 A~~aF~~Ai 130 (157)
T PRK15363 122 AIKALKAVV 130 (157)
T ss_pred HHHHHHHHH
Confidence 555554443
No 194
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.84 E-value=0.27 Score=36.74 Aligned_cols=60 Identities=17% Similarity=0.350 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 407 AYRVVIKLFVALNDISRAIRYFSKLKE----AGF-CPT-YDIYRDMIRIFMASGRLAKCRDVCKEA 466 (493)
Q Consensus 407 ty~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m 466 (493)
+|+.+-..|...|++++|...|++..+ .|- .|+ ..+|..+-..|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344455555555555555555554431 110 111 344555555666666666666665554
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.74 E-value=1.3 Score=42.12 Aligned_cols=98 Identities=16% Similarity=0.070 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-C-CCCHHHH
Q 011102 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL----PAYRVVIKLFVALNDISRAIRYFSKLKEAG-F-CPTYDIY 443 (493)
Q Consensus 370 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~----~ty~~li~~~~~~g~~~~A~~~~~~m~~~g-~-~p~~~ty 443 (493)
...|..-+.-+.+.|++++|...|+...+. .|+. ..+-.+-..|...|++++|...|+.+.+.- - ......+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 345666666667789999999999998875 2443 356677788999999999999999998432 1 1123444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 444 RDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 444 ~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
-.+...+...|+.++|.++|++..+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45566778999999999999999864
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.73 E-value=0.44 Score=34.55 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 011102 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG-RLAKCRDVCKEAE 467 (493)
Q Consensus 406 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g-~~~~A~~l~~~m~ 467 (493)
.+|..+=..+.+.|++++|...|++..+..- -+...|..+-.+|.+.| ++++|.+.+++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3445555555666666666666666554331 14445555555566666 4666666655544
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.68 E-value=1.5 Score=40.91 Aligned_cols=143 Identities=10% Similarity=-0.005 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH-
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMK- 343 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~- 343 (493)
+-+.++..+.-.|.+.-.+.++.+.++..-+-++...+.|.+.-.+. |+.+.|...|+..++. .-+.|..+++.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~-GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQI-GDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHH-HhhhhccchhHHHHh
Confidence 44667777777788888888999988877777888888999999999 9999999999988765 34455555555543
Q ss_pred ----HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011102 344 ----VGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412 (493)
Q Consensus 344 ----~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li 412 (493)
.|.-.+++.+|...|+++.... ..|.+.-|.=.-...-.|+..+|.+.++.|.+. .|...+-++++
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 3445677889999998887542 234454554333444468999999999999875 46655555444
No 198
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=93.38 E-value=7 Score=36.66 Aligned_cols=177 Identities=8% Similarity=-0.063 Sum_probs=103.8
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcCCHHHHH
Q 011102 205 ELGHMNLPERALQTFCWAQKQPHLFPDDR-LLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAW 283 (493)
Q Consensus 205 ~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 283 (493)
.+.+.|++++|.+.|+.+... -|+.. .-.+ .--+..+|-+.+++++|.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~---yP~s~~a~~a----------------------------~l~la~ayy~~~~y~~A~ 89 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNR---YPFGPYSQQV----------------------------QLDLIYAYYKNADLPLAQ 89 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCChHHHHH----------------------------HHHHHHHHHhcCCHHHHH
Confidence 445688999999999998864 23221 1111 012566777888899999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhcCC----------------CC---HHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 011102 284 KLLMVAKDGGRMLDPSIYAKLILELGKNP----------------DK---YMLVMTLLDELGQRDDLNLSQQDCTAIMKV 344 (493)
Q Consensus 284 ~l~~~m~~~g~~pd~~t~~~li~~~~~~~----------------~~---~~~a~~l~~~m~~~~g~~p~~~~~~~li~~ 344 (493)
..|++..+.--.-...-|.-.+.|.+... .+ ..+|.+.|+.+ |.-
T Consensus 90 ~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l----------------i~~ 153 (243)
T PRK10866 90 AAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL----------------VRG 153 (243)
T ss_pred HHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH----------------HHH
Confidence 99988887542222334444444443210 01 12333444444 444
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHH
Q 011102 345 GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS--NCLFDLPAYRVVIKLFVALNDIS 422 (493)
Q Consensus 345 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~--gi~pd~~ty~~li~~~~~~g~~~ 422 (493)
|-...-..+|...+..+... =...--.+..-|.+.|.+..|..-|+.+.+. +-.......-.++.+|.+.|..+
T Consensus 154 yP~S~ya~~A~~rl~~l~~~----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~ 229 (243)
T PRK10866 154 YPNSQYTTDATKRLVFLKDR----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNA 229 (243)
T ss_pred CcCChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChH
Confidence 44444455565555444321 0111114455677888888888888888765 34444556677888888888888
Q ss_pred HHHHHHHHHH
Q 011102 423 RAIRYFSKLK 432 (493)
Q Consensus 423 ~A~~~~~~m~ 432 (493)
+|..+...+.
T Consensus 230 ~a~~~~~~l~ 239 (243)
T PRK10866 230 QADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHh
Confidence 8888776654
No 199
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.33 E-value=2.7 Score=43.18 Aligned_cols=156 Identities=12% Similarity=0.144 Sum_probs=97.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHH
Q 011102 274 VKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGV 353 (493)
Q Consensus 274 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 353 (493)
.-.|+++++.++.+.=.-..- ....-.+.++.-+-+. |..+.|+++-..-..+ .+...++|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~-i~~~~~~~i~~fL~~~-G~~e~AL~~~~D~~~r-------------FeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPN-IPKDQGQSIARFLEKK-GYPELALQFVTDPDHR-------------FELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHT-T-HHHHHHHSS-HHHH-------------HHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhccc-CChhHHHHHHHHHHHC-CCHHHHHhhcCChHHH-------------hHHHHhcCCHHH
Confidence 345778887666641111000 1244467777777777 8888888776544332 334557788888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433 (493)
Q Consensus 354 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 433 (493)
|.++-++. .+...|..|-+...+.|+++-|++.|.+... |..|+--|.-.|+.+.-.++.+.-..
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 88776543 3667888888888899999999888887643 67777778888888777777766666
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011102 434 AGFCPTYDIYRDMIRIFMASGRLAKCRDVCKE 465 (493)
Q Consensus 434 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 465 (493)
.|- +|....++.-.|++++..+++.+
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 553 56677777777888887776654
No 200
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=93.33 E-value=7.9 Score=37.16 Aligned_cols=33 Identities=18% Similarity=0.041 Sum_probs=20.7
Q ss_pred CHHHHHHHHhhhcccCcHHHHHHHHHhCCChHHHHHHHHHHH
Q 011102 182 DVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQ 223 (493)
Q Consensus 182 ~~~~a~~~~~~m~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 223 (493)
+.++|.+.| .-.-..|-..|++++|.+.|...-
T Consensus 30 ~~e~Aa~~y---------~~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 30 DYEEAADLY---------EKAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHH---------HHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred CHHHHHHHH---------HHHHHHHHHHhccchhHHHHHHHH
Confidence 555665553 334667777778888877776654
No 201
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.27 E-value=0.72 Score=33.79 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=33.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 413 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
..|.+.+++++|.++++.+....-. +...|...-..+.+.|++++|.+.|+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3456666666666666666654322 444555556666666666666666666664
No 202
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.20 E-value=5.6 Score=41.31 Aligned_cols=162 Identities=14% Similarity=0.108 Sum_probs=87.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHH-----HHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 011102 302 AKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQ-----DCTAIMKVGIR----LQKFGVVESLFHWFTHSGRDPTVVM 372 (493)
Q Consensus 302 ~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~-----~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t 372 (493)
..++...+-. |+-+.+++++.+-.+..++.-... .|..++..++- ....+.|.++++.+.+. -|+..-
T Consensus 192 ~kll~~vGF~-gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFS-GDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHhhcCcC-CcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3455555555 666666666666554433332221 34444443332 34566777777777644 466555
Q ss_pred HHHHH-HHHHcCCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011102 373 YTTLI-HSRLSEKKCREALTVVWNMEASNC---LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448 (493)
Q Consensus 373 y~~li-~~~~~~g~~~~A~~l~~~M~~~gi---~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~ 448 (493)
|...- +.+...|++++|.+.|++...... +.....|--+.-.+.-.++|++|.+.|..+.+.. .....+|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 54443 333445777777777775442110 1112223333344666778888888888887432 123444444433
Q ss_pred HH-HHcCCH-------HHHHHHHHHHH
Q 011102 449 IF-MASGRL-------AKCRDVCKEAE 467 (493)
Q Consensus 449 ~~-~~~g~~-------~~A~~l~~~m~ 467 (493)
+| ...|+. ++|.++|.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 33 345666 77777777764
No 203
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=93.20 E-value=14 Score=39.67 Aligned_cols=286 Identities=11% Similarity=-0.010 Sum_probs=155.8
Q ss_pred ccCCCCHHHHHHHHhhhccc-----CcHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-Hc-CCCc
Q 011102 177 LDSHKDVAEVLDKCGRFLRK-----GSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLA-RH-HELK 249 (493)
Q Consensus 177 ~~~~~~~~~a~~~~~~m~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~-~~-g~~~ 249 (493)
+..+|+++.+.+.|++...- ..|+.+-..|...|.-..|+.+.+.-... .-.|+..+--.++...| +. +..+
T Consensus 333 l~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~-~~~ps~~s~~Lmasklc~e~l~~~e 411 (799)
T KOG4162|consen 333 LSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK-SEQPSDISVLLMASKLCIERLKLVE 411 (799)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc-ccCCCcchHHHHHHHHHHhchhhhh
Confidence 45568888888888854432 37888888888888888888888766543 22244333333332222 21 1110
Q ss_pred h----hh-hHH-------------------------------------------Hhhc-----cCcHHHHHHHHHHHHhc
Q 011102 250 V----PF-KLE-------------------------------------------NFVS-----LASKGVLEATAKGFVKG 276 (493)
Q Consensus 250 ~----~~-~l~-------------------------------------------~~~~-----~~~~~~~~~li~~~~~~ 276 (493)
. +. ++. .+.+ +.|..+---+---|+..
T Consensus 412 egldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~ 491 (799)
T KOG4162|consen 412 EGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQ 491 (799)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 0 00 000 0000 00111111233346777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCC------------------CHHH-
Q 011102 277 GNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNL------------------SQQD- 337 (493)
Q Consensus 277 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p------------------~~~~- 337 (493)
++++.|++..++..+.+-.-+...|.-+.-.+... +++.+|+.+.+......|... ...|
T Consensus 492 R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~-kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~ 570 (799)
T KOG4162|consen 492 RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQ-KRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTC 570 (799)
T ss_pred HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHH
Confidence 88999999999988887677888887777777766 777777777665433212100 0111
Q ss_pred --------------------------------------------------------------------------------
Q 011102 338 -------------------------------------------------------------------------------- 337 (493)
Q Consensus 338 -------------------------------------------------------------------------------- 337 (493)
T Consensus 571 ~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~ 650 (799)
T KOG4162|consen 571 IHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQ 650 (799)
T ss_pred HHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHH
Confidence
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 011102 338 --CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL-PAYRVVIKL 414 (493)
Q Consensus 338 --~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~-~ty~~li~~ 414 (493)
|...-+.+.+.+..++|...+.+.... ..-....|.-.-..+-..|++++|.+.|..... +.||. .+.+++-..
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHH
Confidence 122223333333344443333332211 011222233333344445556666666655443 33443 455666666
Q ss_pred HHHcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 415 FVALNDISRAIR--YFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 415 ~~~~g~~~~A~~--~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
+.+.|+-..|.. ++.++.+.+- -+...|-.+-..+-+.|+.++|.+.|+...+
T Consensus 728 lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 777776666666 7777766553 2666777777777777777777777766543
No 204
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=93.18 E-value=4 Score=44.95 Aligned_cols=160 Identities=9% Similarity=-0.050 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHH--HHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCT--AIM 342 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~--~li 342 (493)
.|..|-..|+..-+...|.+.|+..-+.. .-|...+..+.+.|++. ..|+.|..+.-...+. -..-...+| -.-
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~-~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEE-STWEEAFEICLRAAQK--APAFACKENWVQRG 569 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhcc-ccHHHHHHHHHHHhhh--chHHHHHhhhhhcc
Confidence 46666666666666777777777665532 12334556666777777 6777777662222111 000111111 122
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHHcCC
Q 011102 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK--LFVALND 420 (493)
Q Consensus 343 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~--~~~~~g~ 420 (493)
-.|-+.++...|..-|+.-.+.. +.|...|..|..+|.+.|+...|+++|.+.... .|+. +|.-.-. .-|..|+
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~Gk 645 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGK 645 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhh
Confidence 23445556666666665544221 235666777777777777777777777655432 3432 3332222 2355566
Q ss_pred HHHHHHHHHHHH
Q 011102 421 ISRAIRYFSKLK 432 (493)
Q Consensus 421 ~~~A~~~~~~m~ 432 (493)
..+|...+....
T Consensus 646 Ykeald~l~~ii 657 (1238)
T KOG1127|consen 646 YKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 205
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.16 E-value=6.5 Score=40.83 Aligned_cols=163 Identities=13% Similarity=0.081 Sum_probs=112.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHhcC---CCCHHHHHHHHHHHhhcCCCCCCHH
Q 011102 266 LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDP------SIYAKLILELGKN---PDKYMLVMTLLDELGQRDDLNLSQQ 336 (493)
Q Consensus 266 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~------~t~~~li~~~~~~---~~~~~~a~~l~~~m~~~~g~~p~~~ 336 (493)
+..++....=.|+-+.+++.+.+-.+.+-.-.+ .+|..++..++.. +...+.|.++++.+.++ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 456677777789999999999887664322222 3466666665554 47889999999999876 38877
Q ss_pred HHHHHH-HHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011102 337 DCTAIM-KVGIRLQKFGVVESLFHWFTHSG---RDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412 (493)
Q Consensus 337 ~~~~li-~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li 412 (493)
.|...- ..+...|++++|.+.|++..... -+.....|--+.-.+.-.++|++|.+.|..+.+..- ....+|.-+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHH
Confidence 776553 46677899999999999654211 122344455566678888999999999999987532 2344454444
Q ss_pred HH-HHHcCCH-------HHHHHHHHHHH
Q 011102 413 KL-FVALNDI-------SRAIRYFSKLK 432 (493)
Q Consensus 413 ~~-~~~~g~~-------~~A~~~~~~m~ 432 (493)
.+ +...|+. ++|.++|.+..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 33 3445666 88888888764
No 206
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.09 E-value=0.57 Score=33.94 Aligned_cols=58 Identities=9% Similarity=-0.011 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHH
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK-KCREALTVVWN 395 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g-~~~~A~~l~~~ 395 (493)
+|..+-..+.+.|++++|+..|++..+.. +-+...|..+-.+|.+.| ++++|++.++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 34444444444455555555554443321 113334444444444444 34444444444
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.86 E-value=0.33 Score=36.26 Aligned_cols=61 Identities=18% Similarity=0.136 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 371 VMYTTLIHSRLSEKKCREALTVVWNMEAS----NC-LFD-LPAYRVVIKLFVALNDISRAIRYFSKL 431 (493)
Q Consensus 371 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~----gi-~pd-~~ty~~li~~~~~~g~~~~A~~~~~~m 431 (493)
.+|+.+-..|...|++++|++.|++..+. |- .|+ ..+++.+-..|...|++++|.+++++-
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555666666666666666554322 11 122 345555556666666666666666654
No 208
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=92.32 E-value=19 Score=38.83 Aligned_cols=201 Identities=11% Similarity=0.032 Sum_probs=127.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 011102 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341 (493)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~l 341 (493)
+..+|..|.-+....|+++.+.+.|++....- .-....|+.+-..|... |.-..|..++++-... .-.|+..+--.+
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saa-g~~s~Av~ll~~~~~~-~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAA-GSDSKAVNLLRESLKK-SEQPSDISVLLM 398 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHh-ccchHHHHHHHhhccc-ccCCCcchHHHH
Confidence 55678888888888999999999998776432 22344566666667666 7778888888776543 222433332222
Q ss_pred HH-HH-HHcCCHHHHHHHHHHHHH--cCC--CCCHHHHHHHHHHHHcCC-----------CHHHHHHHHHHHHHC-CCCC
Q 011102 342 MK-VG-IRLQKFGVVESLFHWFTH--SGR--DPTVVMYTTLIHSRLSEK-----------KCREALTVVWNMEAS-NCLF 403 (493)
Q Consensus 342 i~-~~-~~~g~~~~A~~l~~~m~~--~g~--~p~~~ty~~li~~~~~~g-----------~~~~A~~l~~~M~~~-gi~p 403 (493)
+. .| .+.|.++++++.-.+... .|. ......|-.+--+|...- ...++++.+++..+. +-.|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 22 22 233556666655555443 111 122333444443443221 235677778877654 4556
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 404 d~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
++.-|-++= |+-.++++.|.+...+..+-+-.-+...|..|.-.+.-.+++.+|+.+.+...
T Consensus 479 ~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 479 LVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred hHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 666665554 45567889999998888877656688888888888888899999988877654
No 209
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.19 E-value=2.7 Score=42.53 Aligned_cols=64 Identities=8% Similarity=0.015 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 011102 334 SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTV----VMYTTLIHSRLSEKKCREALTVVWNMEAS 399 (493)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~M~~~ 399 (493)
+...++.+-.+|.+.|++++|...|++-.+. .|+. .+|..+-.+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556777777888888888888888775544 4542 35777778888888888888887776663
No 210
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.11 E-value=4.1 Score=41.84 Aligned_cols=149 Identities=21% Similarity=0.174 Sum_probs=96.6
Q ss_pred CCCCHHHHHHHHh------hhcccCcHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhh
Q 011102 179 SHKDVAEVLDKCG------RFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPF 252 (493)
Q Consensus 179 ~~~~~~~a~~~~~------~m~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~ 252 (493)
-.++++++.+... ..+ ++-.+.+++-+-+.|..+.|+++-.+-..+ .+...+.|+++ .
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L~--~ 336 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNLD--I 336 (443)
T ss_dssp HTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-HH--H
T ss_pred HcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCHH--H
Confidence 3577777544433 222 345788899999999999999987654332 23445677744 4
Q ss_pred hHHHhhccCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCC
Q 011102 253 KLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN 332 (493)
Q Consensus 253 ~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~ 332 (493)
|+..-.+..+...|..|-+...+.|+++-|.+.|.+..+ |..|+--|.-. |+.+...++.+....+ |
T Consensus 337 A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~-g~~~~L~kl~~~a~~~-~-- 403 (443)
T PF04053_consen 337 ALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSST-GDREKLSKLAKIAEER-G-- 403 (443)
T ss_dssp HHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHC-T-HHHHHHHHHHHHHT-T--
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHh-CCHHHHHHHHHHHHHc-c--
Confidence 444466677888999999999999999999999987655 56666667777 7777777777766655 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011102 333 LSQQDCTAIMKVGIRLQKFGVVESLFHW 360 (493)
Q Consensus 333 p~~~~~~~li~~~~~~g~~~~A~~l~~~ 360 (493)
-+|....++.-.|++++..+++.+
T Consensus 404 ----~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 ----DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ----CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 256666677777887777776654
No 211
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.91 E-value=7.9 Score=43.55 Aligned_cols=134 Identities=13% Similarity=0.078 Sum_probs=77.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh----cCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 011102 267 EATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELG----KNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIM 342 (493)
Q Consensus 267 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~----~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li 342 (493)
+-.++.--+.|.+++|+.++. ||...+..+..+|+ .. ..+++|--+|+...+. .-.+
T Consensus 912 ~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~-~~~~~Aal~Ye~~Gkl----------ekAl 972 (1265)
T KOG1920|consen 912 PECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREE-LMSDEAALMYERCGKL----------EKAL 972 (1265)
T ss_pred HHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHhccH----------HHHH
Confidence 333344444455555554443 67666665554443 34 5666666666554332 3456
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011102 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVM--YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALND 420 (493)
Q Consensus 343 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~ 420 (493)
.+|-.+|+|++|+.+-.+|.. ..|... --.|+.-+...++.-+|-++..+-.+. +.-.+.-||++..
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~ 1041 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKE 1041 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhH
Confidence 777777888888877777651 112221 256777777778877777777765442 2334455666666
Q ss_pred HHHHHHHHHH
Q 011102 421 ISRAIRYFSK 430 (493)
Q Consensus 421 ~~~A~~~~~~ 430 (493)
|++|.++-..
T Consensus 1042 ~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1042 WEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHh
Confidence 7777665443
No 212
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=91.78 E-value=6 Score=43.66 Aligned_cols=156 Identities=11% Similarity=0.066 Sum_probs=95.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 011102 305 ILELGKNPDKYMLVMTLLDELGQRDDLNLS-QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE 383 (493)
Q Consensus 305 i~~~~~~~~~~~~a~~l~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 383 (493)
+.+|.+. +...|+..|-...+. .++ ...|+.|-..|+..-+...|.+.|++-.+.. .-|...+-.+.+.|++.
T Consensus 466 a~~~~rK--~~~~al~ali~alrl---d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~ 539 (1238)
T KOG1127|consen 466 ALGCMRK--NSALALHALIRALRL---DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEE 539 (1238)
T ss_pred HHHHhhh--hHHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhcc
Confidence 3444443 345555555444332 122 3467888888888878888888888766331 23566777888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011102 384 KKCREALTVVWNMEASNCLFDLPAYRVVIKL--FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461 (493)
Q Consensus 384 g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 461 (493)
.++++|..+.-.--+. -..-...+|.+-.+ |-+.++...|..-|+.-.....+ |...|..+..+|.++|++..|.+
T Consensus 540 ~~we~a~~I~l~~~qk-a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlK 617 (1238)
T KOG1127|consen 540 STWEEAFEICLRAAQK-APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALK 617 (1238)
T ss_pred ccHHHHHHHHHHHhhh-chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHH
Confidence 8888888873222111 11111223333333 55667777777777766644432 66777777778888888888877
Q ss_pred HHHHHHH
Q 011102 462 VCKEAEM 468 (493)
Q Consensus 462 l~~~m~~ 468 (493)
+|.+...
T Consensus 618 vF~kAs~ 624 (1238)
T KOG1127|consen 618 VFTKASL 624 (1238)
T ss_pred hhhhhHh
Confidence 7776653
No 213
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=91.68 E-value=9.2 Score=33.95 Aligned_cols=127 Identities=12% Similarity=0.053 Sum_probs=68.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC---CCCCCHHH
Q 011102 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS---NCLFDLPA 407 (493)
Q Consensus 331 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~---gi~pd~~t 407 (493)
..|++..--.|-.++.+.|+..+|...|++-..--+.-|....-.+-++....++...|...++.+.+. +-.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~-- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG-- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--
Confidence 345555555666666666666666666666654334445555556666666666666666666665543 223332
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011102 408 YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461 (493)
Q Consensus 408 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 461 (493)
.-.+-..|...|+..+|+.-|+...+.---|-...| .-..+.+.|+.++|..
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~a 214 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANA 214 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHH
Confidence 223345566666666666666666543222222222 2223445555554433
No 214
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.61 E-value=2.9 Score=42.31 Aligned_cols=65 Identities=6% Similarity=-0.145 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011102 296 LDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQ----QDCTAIMKVGIRLQKFGVVESLFHWFTHS 364 (493)
Q Consensus 296 pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 364 (493)
.+...|+.+-.+|.+. |++++|+..|++..+. .|+. .+|..+-.+|.+.|++++|++.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~l-GryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSK-GRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566888999999999 9999999999997654 4664 46899999999999999999999998864
No 215
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.58 E-value=2.6 Score=40.06 Aligned_cols=96 Identities=14% Similarity=0.103 Sum_probs=50.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 011102 345 GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD-LPAYRVVIKLFVALNDISR 423 (493)
Q Consensus 345 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd-~~ty~~li~~~~~~g~~~~ 423 (493)
+.+.+++++|+..|.+-.+.. +-|.+-|.-=-.+|++.|.++.|++=.+.... +.|. ..+|..|=.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 445566666666666655331 22445555555666666666666555444332 1222 2355555556666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHH
Q 011102 424 AIRYFSKLKEAGFCPTYDIYRD 445 (493)
Q Consensus 424 A~~~~~~m~~~g~~p~~~ty~~ 445 (493)
|.+.|+.-.+ +.|+-.+|-.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHH
Confidence 6666555443 3455555543
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.51 E-value=3.4 Score=43.26 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-----------HHHHHHHHH
Q 011102 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVM-----------YTTLIHSRL 381 (493)
Q Consensus 313 ~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-----------y~~li~~~~ 381 (493)
..+..|-++|..|... .++++.....+++.+|..+-+...+. .||+.. |---=++|-
T Consensus 761 ~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 761 DSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFH 828 (1081)
T ss_pred cccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHH
Confidence 5556666666666433 34556666667777776666654432 334321 222334555
Q ss_pred cCCCHHHHHHHHHHHHH
Q 011102 382 SEKKCREALTVVWNMEA 398 (493)
Q Consensus 382 ~~g~~~~A~~l~~~M~~ 398 (493)
++|+-.+|.++++++-.
T Consensus 829 kAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 829 KAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HhcchHHHHHHHHHhhh
Confidence 55555666665555543
No 217
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.34 E-value=16 Score=39.17 Aligned_cols=92 Identities=7% Similarity=0.074 Sum_probs=67.7
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011102 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444 (493)
Q Consensus 365 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~ 444 (493)
|..-.--|.+--+.-+...|+..+|.++-.+.+ .||..-|--=+.+++..++|++-+++-+.++. ..-|.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~ 748 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYL 748 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCch
Confidence 333444455556666777788888888777654 38888888888999999999888777766652 34467
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 011102 445 DMIRIFMASGRLAKCRDVCKEA 466 (493)
Q Consensus 445 ~li~~~~~~g~~~~A~~l~~~m 466 (493)
-.+.+|.+.|+.+||.+++...
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhcc
Confidence 7888899999999998887654
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=91.33 E-value=1.7 Score=31.79 Aligned_cols=53 Identities=15% Similarity=0.089 Sum_probs=23.5
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 379 SRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 379 ~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
.|.+.+++++|.++++.+...+- -+...+...-..+.+.|++++|.+.|+...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444555555555554444311 122333333344445555555555555444
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.16 E-value=3.6 Score=39.18 Aligned_cols=99 Identities=7% Similarity=-0.069 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011102 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEAS-NCLFDLPA-YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446 (493)
Q Consensus 369 ~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~-gi~pd~~t-y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~l 446 (493)
|...|-.|-..|.+.|+.+.|..-|....+. |-.|+... |...+..-.....-.++..+|+++....- -|+.+-..|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHHHH
Confidence 4455555555555555555555555544332 22222211 11111111112233445555555553321 133444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 011102 447 IRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 447 i~~~~~~g~~~~A~~l~~~m~~ 468 (493)
-..+...|++.+|...|+.|.+
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHh
Confidence 4455555555555555555554
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=91.00 E-value=10 Score=34.34 Aligned_cols=172 Identities=13% Similarity=0.081 Sum_probs=83.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC
Q 011102 272 GFVKGGNLKLAWKLLMVAKDGGRM--LDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQ 349 (493)
Q Consensus 272 ~~~~~g~~~~A~~l~~~m~~~g~~--pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g 349 (493)
.+.+.|++++|.+.|+.+...--. --....-.+..++.+. |++++|...+++..+...-.| ...+...+.+.+...
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~-~~y~~A~~~~~~fi~~yP~~~-~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQ-GDYEEAIAAYERFIKLYPNSP-KADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHH-TT-T-THHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCc-chhhHHHHHHHHHHH
Confidence 345566777777777776653211 1122333455666666 677777777776655421112 122333333332221
Q ss_pred CHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 011102 350 KFGVVESLFHWFTHSGRDPT-------VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422 (493)
Q Consensus 350 ~~~~A~~l~~~m~~~g~~p~-------~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~ 422 (493)
...... ....| ...+..+|.-|=......+|...+.++.+. --..- -.+-.-|.+.|.+.
T Consensus 92 ~~~~~~---------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e-~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 92 QIPGIL---------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHE-LYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHH-HHHHHHHHCTT-HH
T ss_pred hCccch---------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHcccHH
Confidence 111111 00111 234555666666666666665555554431 00111 12345578888888
Q ss_pred HHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHH
Q 011102 423 RAIRYFSKLKEAGFCPTY----DIYRDMIRIFMASGRLAKCR 460 (493)
Q Consensus 423 ~A~~~~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~A~ 460 (493)
.|..-++.+.+.= |+. ...-.|+.+|-+.|..+.|.
T Consensus 159 aA~~r~~~v~~~y--p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 159 AAIIRFQYVIENY--PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8888888877431 332 34466777788888776443
No 221
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=91.00 E-value=8.8 Score=36.64 Aligned_cols=147 Identities=7% Similarity=0.072 Sum_probs=79.6
Q ss_pred HHHHHHhhhcccCcHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhcc----
Q 011102 185 EVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSL---- 260 (493)
Q Consensus 185 ~a~~~~~~m~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~---- 260 (493)
-+.++|.........|.+|+.+.+.+.-+.-.++ +.|+..+-...-.-+...|--+. ..|.+.
T Consensus 185 F~~~lFk~~~~Ek~i~~lis~Lrkg~md~rLmef---------fPpnkrs~E~Fak~Ft~agL~el----vey~~~q~~~ 251 (412)
T KOG2297|consen 185 FAVKLFKEWLVEKDINDLISSLRKGKMDDRLMEF---------FPPNKRSVEHFAKYFTDAGLKEL----VEYHRNQQSE 251 (412)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhcChHhHHHHh---------cCCcchhHHHHHHHHhHhhHHHH----HHHHHHHHHH
Confidence 3566777777777778888777665543333222 34555555555555555553111 111111
Q ss_pred -CcHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHH----HHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC
Q 011102 261 -ASKGVLEATAKGFVKGGNLKLAWKLL-MVAKDGGRMLDPS----IYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS 334 (493)
Q Consensus 261 -~~~~~~~~li~~~~~~g~~~~A~~l~-~~m~~~g~~pd~~----t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~ 334 (493)
.-...-..|..-..+...+++..... ++|++.++ |++. .|+.+|++---+.+.---|.+.++.
T Consensus 252 ~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------- 320 (412)
T KOG2297|consen 252 GARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------- 320 (412)
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH----------
Confidence 01123345555566666677766655 55666554 5543 5777776654441111222333332
Q ss_pred HHHHHHHHHHHHHcCCHHHHH
Q 011102 335 QQDCTAIMKVGIRLQKFGVVE 355 (493)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~ 355 (493)
..+|..|+.++|..|+.+.++
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 346788888888888877554
No 222
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.71 E-value=3.1 Score=39.58 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCCCHHHHH
Q 011102 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK-----EAGFCPTYDIYR 444 (493)
Q Consensus 370 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~ty~ 444 (493)
..++..++..+...|+.+.+...++++..... -|...|..++.+|.+.|+...|.+.|+.+. +.|+.|-..+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 45555666666666666666666666555432 355566666666666666666666665554 345555555555
Q ss_pred HHHHH
Q 011102 445 DMIRI 449 (493)
Q Consensus 445 ~li~~ 449 (493)
...+.
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44444
No 223
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.09 E-value=25 Score=36.24 Aligned_cols=372 Identities=14% Similarity=0.067 Sum_probs=195.3
Q ss_pred cCCCccccchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhHHHhhhhhhhhhhhhccCCchhHHHHH
Q 011102 92 ADNDFIWESEELEAISSLFQGRIPQKPGRLYRERPLPLPLPHRLRPLELPTPKKRVCLASSRASICKQVYKNPSFLISLA 171 (493)
Q Consensus 92 ~~~~~~~~~~~~~~a~~lf~~m~~g~~p~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~l~~l~ 171 (493)
+.++..+++|+++.|..+|-+-..-.++|.+-|+--. .+|+..+....|+..+.- +..-.|..-.++.
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrs----------aa~a~~~~~~~al~da~k--~~~l~p~w~kgy~ 74 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRS----------AAYASLGSYEKALKDATK--TRRLNPDWAKGYS 74 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchH----------HHHHHHhhHHHHHHHHHH--HHhcCCchhhHHH
Confidence 4566788899999999999887333455887777777 778888887776322111 1111122222333
Q ss_pred HHHhhccCCCCHHHHHHHHhhhcccC-cHHHHHHHHHhCCChHHH-HHHHH----HHHhCCCC-----CCCHHHHHHHHH
Q 011102 172 RDIKGLDSHKDVAEVLDKCGRFLRKG-SLSFTVRELGHMNLPERA-LQTFC----WAQKQPHL-----FPDDRLLASTVE 240 (493)
Q Consensus 172 ~~l~~~~~~~~~~~a~~~~~~m~~~~-~~~~li~~~~~~g~~~~A-~~l~~----~m~~~~g~-----~pd~~t~~~li~ 240 (493)
+.-.++.-.|++++|+..|.+-+..+ +--.|..++...-..+.+ -+.|. ++... +. ......|..++.
T Consensus 75 r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~-~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 75 RKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLA-NLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhh-cChhhhhhhccHHHHHHHH
Confidence 33333444599999999999877765 333334444433322211 11110 11000 00 000111233332
Q ss_pred HHHHcC-----CCc---hhhhHH--------Hhh---------------cc----C---cH----------HHHHHHHHH
Q 011102 241 VLARHH-----ELK---VPFKLE--------NFV---------------SL----A---SK----------GVLEATAKG 272 (493)
Q Consensus 241 ~~~~~g-----~~~---~~~~l~--------~~~---------------~~----~---~~----------~~~~~li~~ 272 (493)
.+-+.. .+. ...++- .+. .+ + +. .-+..+.++
T Consensus 154 ~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgna 233 (539)
T KOG0548|consen 154 IIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNA 233 (539)
T ss_pred HhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHH
Confidence 221110 000 000000 000 00 0 00 025567777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhcCCCCHHHHHHHHHHHhhcCC-----CCCCHHHHHHHHHHHH
Q 011102 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIY-AKLILELGKNPDKYMLVMTLLDELGQRDD-----LNLSQQDCTAIMKVGI 346 (493)
Q Consensus 273 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~~li~~~~~~~~~~~~a~~l~~~m~~~~g-----~~p~~~~~~~li~~~~ 346 (493)
.-+..+++.|.+-+....+.. ...+| +..-.+|... |.+.+....-+.-.+.++ .+.=...+..+-++|.
T Consensus 234 aykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~-~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~ 309 (539)
T KOG0548|consen 234 AYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLER-GKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYT 309 (539)
T ss_pred HHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhc-cHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Confidence 777888888888888777754 33344 3444456666 666555544443333211 0000112223445777
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------------------------HHHHHHcCCCHHHHHHHHHHHHHCCC
Q 011102 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTT-------------------------LIHSRLSEKKCREALTVVWNMEASNC 401 (493)
Q Consensus 347 ~~g~~~~A~~l~~~m~~~g~~p~~~ty~~-------------------------li~~~~~~g~~~~A~~l~~~M~~~gi 401 (493)
+.++++.|...|.+....-..||..+=.. =-+.+.+.|++..|.+-+.++....
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~- 388 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD- 388 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-
Confidence 77888888888887665444454443111 1235567788888998888887765
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHH
Q 011102 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTY-DIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVE 480 (493)
Q Consensus 402 ~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 480 (493)
+-|...|+.---+|.+.|.+..|++=-+.-.+. .|+. .-|.-=-.++.-..++++|.+.|++-.+. .|+..-+..
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~ 464 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAID 464 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHH
Confidence 345678888888888888888887765554443 2322 11211122222334677777777776653 355555544
Q ss_pred HHHhh
Q 011102 481 LLQIE 485 (493)
Q Consensus 481 Ll~~~ 485 (493)
-++-|
T Consensus 465 ~~~rc 469 (539)
T KOG0548|consen 465 GYRRC 469 (539)
T ss_pred HHHHH
Confidence 44444
No 224
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=90.01 E-value=30 Score=36.99 Aligned_cols=267 Identities=12% Similarity=0.021 Sum_probs=144.9
Q ss_pred CCCHHHHHHHHhhhcccCcHHHHHHHHHhCCChHHHHHHHHH----------------HHhCCCCCCCHHHHHHHHHHHH
Q 011102 180 HKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCW----------------AQKQPHLFPDDRLLASTVEVLA 243 (493)
Q Consensus 180 ~~~~~~a~~~~~~m~~~~~~~~li~~~~~~g~~~~A~~l~~~----------------m~~~~g~~pd~~t~~~li~~~~ 243 (493)
-|.+++|.+.+-.+.+++ ..|..+.+.|+|-...++++. |-+. -.+...|......|.
T Consensus 747 ~g~feeaek~yld~drrD---LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~---fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET---FAEMMEWEEAAKYYS 820 (1189)
T ss_pred hcchhHhhhhhhccchhh---hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 488899999888776664 223344444444444444332 1110 112233445555555
Q ss_pred HcCCCch-hhhH---HHhhc-------cC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcC
Q 011102 244 RHHELKV-PFKL---ENFVS-------LA-SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKN 311 (493)
Q Consensus 244 ~~g~~~~-~~~l---~~~~~-------~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~ 311 (493)
..|+.+. .+.+ +.|.+ ++ +....-.+.+++...|.-++|.+.|-+--. | .+.++.|...
T Consensus 821 ~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~L 891 (1189)
T KOG2041|consen 821 YCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVEL 891 (1189)
T ss_pred hccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHH
Confidence 5555321 1111 12222 12 333566778888888888888887754322 2 2345666666
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCCHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCH---
Q 011102 312 PDKYMLVMTLLDELGQRDDLNLSQQDC--------------TAIMKVGIRLQKFGVVESLFHWFTH----SGRDPTV--- 370 (493)
Q Consensus 312 ~~~~~~a~~l~~~m~~~~g~~p~~~~~--------------~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~--- 370 (493)
++|.+|.++-+...- |.+.+. ---|..+.+.|+.-+|-+++.+|.+ ++.++-.
T Consensus 892 -nQW~~avelaq~~~l-----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~Kk 965 (1189)
T KOG2041|consen 892 -NQWGEAVELAQRFQL-----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKK 965 (1189)
T ss_pred -HHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHH
Confidence 788888877654321 111111 1246677788888788888888853 3443322
Q ss_pred -HHHHHHH-HHH----------HcCCCHHHHHHHHHHHHHC---CCC----CCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 011102 371 -VMYTTLI-HSR----------LSEKKCREALTVVWNMEAS---NCL----FDLPAYRVVIKL--FVALNDISRAIRYFS 429 (493)
Q Consensus 371 -~ty~~li-~~~----------~~~g~~~~A~~l~~~M~~~---gi~----pd~~ty~~li~~--~~~~g~~~~A~~~~~ 429 (493)
+...+|+ .-+ -..|..++|.++++.-... .+. -....|.-+|-+ -...|.++.|.+.--
T Consensus 966 lYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal 1045 (1189)
T KOG2041|consen 966 LYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTAL 1045 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHh
Confidence 1122221 111 1246677777766543211 111 123344444444 566789999988766
Q ss_pred HHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 430 KLK-EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 430 ~m~-~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
.+. -..+-|....|+.|.-+-|....+-.+-+.|-+++
T Consensus 1046 ~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1046 ILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred hhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 666 34566888889888777666655555555444444
No 225
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.99 E-value=6.5 Score=42.52 Aligned_cols=175 Identities=13% Similarity=0.055 Sum_probs=90.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----hcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 011102 267 EATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILEL----GKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIM 342 (493)
Q Consensus 267 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~----~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li 342 (493)
..-|+.+++...++.|..+-+. .+ .|..+...++..| .+. |++++|..-+.+-... +.| ..+|
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~K-gdf~~A~~qYI~tI~~--le~-----s~Vi 404 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGK-GDFDEATDQYIETIGF--LEP-----SEVI 404 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHccc--CCh-----HHHH
Confidence 3455566666666666555432 22 2333333444333 233 6777776666555432 333 2345
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 011102 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422 (493)
Q Consensus 343 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~ 422 (493)
.-|-...++.+--..++.+.+.|. -+...-+.||.+|.+.++.++-.++.+.-. .|..- .-.-..+..|-+.+-++
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHHHHHHHHhChHH
Confidence 555555555555666666666664 333444667777777777776666665443 33221 11344555566666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 423 RAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466 (493)
Q Consensus 423 ~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 466 (493)
+|..+-..... +......++ -..|++++|++.+..|
T Consensus 481 ~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 66655444322 222223333 2346666666665554
No 226
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.80 E-value=13 Score=32.52 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=17.3
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHH
Q 011102 285 LLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLV 318 (493)
Q Consensus 285 l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a 318 (493)
.++-+.+.|+.|+...|..+|+.+.+. |++...
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~-~~~~~L 48 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRN-GQFSQL 48 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHH
Confidence 334444555555555555555555555 544333
No 227
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=89.69 E-value=23 Score=35.29 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 439 TYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 439 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
|---+.+++.++.-.|+.++|.+..+.|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4445577788888888888888888888754
No 228
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.61 E-value=9.7 Score=38.45 Aligned_cols=139 Identities=12% Similarity=0.132 Sum_probs=91.5
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 011102 274 VKGGNLKLAWKLLMVAKDGGRMLD------PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR 347 (493)
Q Consensus 274 ~~~g~~~~A~~l~~~m~~~g~~pd------~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~ 347 (493)
-+.+++.+|.++|.+..+..- -+ .+.-+.+|++|... +.+.....+.+..+..|-.+-...|-.+ .+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAffl~--nld~Me~~l~~l~~~~~~s~~l~LF~~L--~~Y~ 91 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFFLN--NLDLMEKQLMELRQQFGKSAYLPLFKAL--VAYK 91 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHHHh--hHHHHHHHHHHHHHhcCCchHHHHHHHH--HHHH
Confidence 467899999999998877532 22 22345778888875 6777777777777653332222222222 2246
Q ss_pred cCCHHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCCHHHHH
Q 011102 348 LQKFGVVESLFHWFTHS--GRDP------------TVVMYTTLIHSRLSEKKCREALTVVWNMEAS----NCLFDLPAYR 409 (493)
Q Consensus 348 ~g~~~~A~~l~~~m~~~--g~~p------------~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----gi~pd~~ty~ 409 (493)
.+.+++|.+.+..-.+. +..| |.+-=+..++++...|++.++..++++|... .+..|..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78888888888766544 3332 2222356777888888888888888887654 3447888888
Q ss_pred HHHHHHHH
Q 011102 410 VVIKLFVA 417 (493)
Q Consensus 410 ~li~~~~~ 417 (493)
.++-.+++
T Consensus 172 ~~vlmlsr 179 (549)
T PF07079_consen 172 RAVLMLSR 179 (549)
T ss_pred HHHHHHhH
Confidence 87777765
No 229
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.60 E-value=4.8 Score=38.28 Aligned_cols=99 Identities=16% Similarity=0.015 Sum_probs=61.4
Q ss_pred hcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHH
Q 011102 309 GKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP-TVVMYTTLIHSRLSEKKCR 387 (493)
Q Consensus 309 ~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~ 387 (493)
.+. +++.+|+..|.+..+- ..-|.+-|.---.+|++.|.++.|++=.+.-... .| -..+|..|=.+|...|+++
T Consensus 92 m~~-~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 92 MKN-KDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHh-hhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 345 6777777777776653 2234555555667777777777776665554422 23 2456777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011102 388 EALTVVWNMEASNCLFDLPAYRVVIKL 414 (493)
Q Consensus 388 ~A~~l~~~M~~~gi~pd~~ty~~li~~ 414 (493)
+|.+.|+...+ +.|+-.+|-.=|..
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 77777765543 46666666554443
No 230
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=89.60 E-value=22 Score=34.76 Aligned_cols=282 Identities=14% Similarity=0.061 Sum_probs=172.4
Q ss_pred hhccCCCCHHHHHHHHhhhcccC--cHHHHHH---HHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHH--HHHHHcCC
Q 011102 175 KGLDSHKDVAEVLDKCGRFLRKG--SLSFTVR---ELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTV--EVLARHHE 247 (493)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~~--~~~~li~---~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li--~~~~~~g~ 247 (493)
+.+...|++.+|+..|....+-+ .|-++.+ .|...|+...|+.=|.... .++||-.. ..+- ..+.+.|.
T Consensus 46 k~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl---elKpDF~~-ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVL---ELKPDFMA-ARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHH---hcCccHHH-HHHHhchhhhhccc
Confidence 34445577888888777655443 6655543 6677777778887777776 34677432 1111 22456676
Q ss_pred CchhhhHHHh--hccCcHH----------------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 011102 248 LKVPFKLENF--VSLASKG----------------VLEATAKGFVKGGNLKLAWKLLMVAKDGGRML-DPSIYAKLILEL 308 (493)
Q Consensus 248 ~~~~~~l~~~--~~~~~~~----------------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~ 308 (493)
++.+++-+.. ...++.. ..-..+..+.-.|+...|+.....+.+- .| |...|..--.+|
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDASLRQARAKCY 199 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhHHHHHHHHHH
Confidence 5554443221 1112111 1234455667788888998888888773 34 344455556677
Q ss_pred hcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH------------
Q 011102 309 GKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTL------------ 376 (493)
Q Consensus 309 ~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l------------ 376 (493)
... |....|+.=++...+- -.-++.++--+-.-+...|+.+.++...++..+. .||--.+-..
T Consensus 200 i~~-~e~k~AI~Dlk~askL--s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 200 IAE-GEPKKAIHDLKQASKL--SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred Hhc-CcHHHHHHHHHHHHhc--cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHH
Confidence 777 8888887666555432 1234444445556677888888888888777643 5654332211
Q ss_pred -HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 011102 377 -IHSRLSEKKCREALTVVWNMEASNCLFDLPA---YRVVIKLFVALNDISRAIRYFSKLKEAGFCPT-YDIYRDMIRIFM 451 (493)
Q Consensus 377 -i~~~~~~g~~~~A~~l~~~M~~~gi~pd~~t---y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~ 451 (493)
+......++|.++++-.+...+..-.-..++ +..+-.++...|++.+|++.-.+..+. .|| +.++.-=..+|.
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHh
Confidence 1233445666666666666444322211223 344556677888999999988888753 354 778877778888
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 011102 452 ASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 452 ~~g~~~~A~~l~~~m~~~ 469 (493)
-...+++|..=|+...+.
T Consensus 353 ~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 353 GDEMYDDAIHDYEKALEL 370 (504)
T ss_pred hhHHHHHHHHHHHHHHhc
Confidence 888888888888777653
No 231
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.30 E-value=21 Score=34.19 Aligned_cols=231 Identities=11% Similarity=-0.038 Sum_probs=124.6
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011102 207 GHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLL 286 (493)
Q Consensus 207 ~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 286 (493)
.+.|+.+.|..++........ ..+......+.. ..||.-...+.+..+++.|...+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~-----------------------~~yn~G~~l~~~~~~~~~a~~wL 59 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELAR-----------------------VCYNIGKSLLSKKDKYEEAVKWL 59 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHH-----------------------HHHHHHHHHHHcCCChHHHHHHH
Confidence 457888888888887765421 112222222222 23444444444443555555555
Q ss_pred HHHHhC--------CCCCCH-----HHHHHHHHHHhcCCCC---HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC
Q 011102 287 MVAKDG--------GRMLDP-----SIYAKLILELGKNPDK---YMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQK 350 (493)
Q Consensus 287 ~~m~~~--------g~~pd~-----~t~~~li~~~~~~~~~---~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 350 (493)
++..+. ...|+. .++..++.+|... +. .++|..+++.+....+-+ ..++-.-|..+.+.++
T Consensus 60 ~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~-~~~~~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~ 136 (278)
T PF08631_consen 60 QRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEW-DTYESVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFD 136 (278)
T ss_pred HHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCC
Confidence 443322 233443 3456677777776 44 456677777776653333 3445455666666899
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHH---HHHc----
Q 011102 351 FGVVESLFHWFTHSGRDPTVVMYTTLIHSR---LSEKKCREALTVVWNMEASNCLFDLP--AYRVVIKL---FVAL---- 418 (493)
Q Consensus 351 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~---~~~g~~~~A~~l~~~M~~~gi~pd~~--ty~~li~~---~~~~---- 418 (493)
.+++.+++..|...-. -....+..++..+ ... ....|...+..+....+.|... .=..++.. ..+.
T Consensus 137 ~~~~~~~L~~mi~~~~-~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~ 214 (278)
T PF08631_consen 137 EEEYEEILMRMIRSVD-HSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLS 214 (278)
T ss_pred hhHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCcccc
Confidence 9999999999986521 1334455555555 333 3456777777776665555553 11112221 1111
Q ss_pred --CCHHHHHHHHHHHH-HCCCCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHH
Q 011102 419 --NDISRAIRYFSKLK-EAGFCPTYDIYRDMIR-------IFMASGRLAKCRDVCKEA 466 (493)
Q Consensus 419 --g~~~~A~~~~~~m~-~~g~~p~~~ty~~li~-------~~~~~g~~~~A~~l~~~m 466 (493)
++++...++++... ..+-+.+..+-.++.. .+.+.+++++|.+.|+--
T Consensus 215 ~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 215 SSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred chhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 12555556666433 2333334444333322 245678999999988743
No 232
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.20 E-value=3.6 Score=39.38 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011102 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396 (493)
Q Consensus 350 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M 396 (493)
+.++++.++..=.+.|+-||.++++.+|+.+.+.++..+|..+.-.|
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34445555444444555555555555555555555555555544443
No 233
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=89.11 E-value=10 Score=32.23 Aligned_cols=80 Identities=13% Similarity=0.181 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCC---C--CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011102 373 YTTLIHSRLSEKKCREALTVVWNMEASN---C--LFDLPAYRVVIKLFVALND-ISRAIRYFSKLKEAGFCPTYDIYRDM 446 (493)
Q Consensus 373 y~~li~~~~~~g~~~~A~~l~~~M~~~g---i--~pd~~ty~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~ty~~l 446 (493)
.|+++.-....+++...+.+++.+..-. + .-|..+|.+++.+.++..- ---+..+|+-|++.+.+++..-|..|
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555555555555554442110 0 1223345555555544443 22334445555555555555555555
Q ss_pred HHHHHH
Q 011102 447 IRIFMA 452 (493)
Q Consensus 447 i~~~~~ 452 (493)
|.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 555444
No 234
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.08 E-value=5.8 Score=35.17 Aligned_cols=60 Identities=5% Similarity=-0.021 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT--VVMYTTLIHSRLSEKKCREALTVVWNM 396 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~M 396 (493)
.+..+.+-|++.|+.+.|.+.|.++.+....+. ...+-.+|....-.+++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344555555555555555555555554433332 223344444444555555555544443
No 235
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=88.65 E-value=27 Score=34.70 Aligned_cols=242 Identities=14% Similarity=-0.007 Sum_probs=142.8
Q ss_pred hCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHH----HHHcCCCchhhhHHHhhc-----cC-cHHHHHHHHHHHHhcC
Q 011102 208 HMNLPERALQTFCWAQKQPHLFPDDRLLASTVEV----LARHHELKVPFKLENFVS-----LA-SKGVLEATAKGFVKGG 277 (493)
Q Consensus 208 ~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~----~~~~g~~~~~~~l~~~~~-----~~-~~~~~~~li~~~~~~g 277 (493)
-.|+.+.|.+-|+.|... ..|--.=+.+ --+.|.-+ +-..|.+ -+ -.-.+.+.+...|..|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d------PEtRllGLRgLyleAqr~Gare---aAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~g 202 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD------PETRLLGLRGLYLEAQRLGARE---AARHYAERAAEKAPQLPWAARATLEARCAAG 202 (531)
T ss_pred hcCchHHHHHHHHHHhcC------hHHHHHhHHHHHHHHHhcccHH---HHHHHHHHHHhhccCCchHHHHHHHHHHhcC
Confidence 368888888888888753 2222221222 22333322 2222222 11 2235788999999999
Q ss_pred CHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHHhc--CCCCHHHHHHHHHHHhhcCCCCCCHHHHH-HHHHHHHHcCCH
Q 011102 278 NLKLAWKLLMVAKDGG-RMLDPSI--YAKLILELGK--NPDKYMLVMTLLDELGQRDDLNLSQQDCT-AIMKVGIRLQKF 351 (493)
Q Consensus 278 ~~~~A~~l~~~m~~~g-~~pd~~t--~~~li~~~~~--~~~~~~~a~~l~~~m~~~~g~~p~~~~~~-~li~~~~~~g~~ 351 (493)
+|+.|+++++.-++.. +.++..- -..|+.+-.. ...+...|...-.+.. .+.||.+--. ..-.+|.+.|++
T Consensus 203 dWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~ 279 (531)
T COG3898 203 DWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNL 279 (531)
T ss_pred ChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccch
Confidence 9999999998776643 4455432 2234433221 1123444444333322 3455544322 234678899999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 011102 352 GVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS-NCLFD-LPAYRVVIKLFVALNDISRAIRYFS 429 (493)
Q Consensus 352 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~-gi~pd-~~ty~~li~~~~~~g~~~~A~~~~~ 429 (493)
.++-.+++.+.+..-.|++. ++..+.+.|+ .+++-+++.+.. .++|| ..+--++..+-...|++..|..--+
T Consensus 280 rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Ae 353 (531)
T COG3898 280 RKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAE 353 (531)
T ss_pred hhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 99999999999876666642 3344455554 333333333221 23444 4566667777888888887776555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHC
Q 011102 430 KLKEAGFCPTYDIYRDMIRIFMAS-GRLAKCRDVCKEAEMA 469 (493)
Q Consensus 430 ~m~~~g~~p~~~ty~~li~~~~~~-g~~~~A~~l~~~m~~~ 469 (493)
.... ..|....|-.|.+.-.-. |+-.++...+-+-.+.
T Consensus 354 aa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 354 AAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 5432 358888888887776544 8888888887777654
No 236
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=88.40 E-value=6.3 Score=33.52 Aligned_cols=95 Identities=6% Similarity=0.049 Sum_probs=73.3
Q ss_pred HHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCC---C--CCCHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 011102 394 WNMEASNCLFDLP--AYRVVIKLFVALNDISRAIRYFSKLKEAG---F--CPTYDIYRDMIRIFMASGR-LAKCRDVCKE 465 (493)
Q Consensus 394 ~~M~~~gi~pd~~--ty~~li~~~~~~g~~~~A~~~~~~m~~~g---~--~p~~~ty~~li~~~~~~g~-~~~A~~l~~~ 465 (493)
..|++.+..++.. ..|+++.-....+.+.....+++.+..-. + .-+-.+|.+++.+.++..- ---+..+|+-
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 3455566666654 46888888888899998888888874110 0 2356679999999977766 4557889999
Q ss_pred HHHCCCccCHHHHHHHHHhhhhc
Q 011102 466 AEMAGFKLDKQTVVELLQIEKES 488 (493)
Q Consensus 466 m~~~g~~pd~~t~~~Ll~~~~~~ 488 (493)
|++.+.+++..-|..||+.|..+
T Consensus 106 Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHHHcC
Confidence 99999999999999999988765
No 237
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=88.23 E-value=11 Score=38.12 Aligned_cols=115 Identities=15% Similarity=0.034 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--hcCCCCHHHHHHHHHHHhhc-CCCCC-------
Q 011102 264 GVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILEL--GKNPDKYMLVMTLLDELGQR-DDLNL------- 333 (493)
Q Consensus 264 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~--~~~~~~~~~a~~l~~~m~~~-~g~~p------- 333 (493)
+.-+-+|++|...+ .+.....+.+..+.- | ...|-.+..++ .+. +.+.+|.+.+..-... .+.++
T Consensus 47 vl~grilnAffl~n-ld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~-k~~~kal~~ls~w~~~~~~~~~~~Ld~ni 121 (549)
T PF07079_consen 47 VLGGRILNAFFLNN-LDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQ-KEYRKALQALSVWKEQIKGTESPWLDTNI 121 (549)
T ss_pred HHhhHHHHHHHHhh-HHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHh-hhHHHHHHHHHHHHhhhcccccchhhhhH
Confidence 34678889988654 666666666665532 3 23344444432 344 7888888887765443 11222
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHcC
Q 011102 334 -----SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSG----RDPTVVMYTTLIHSRLSE 383 (493)
Q Consensus 334 -----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~ty~~li~~~~~~ 383 (493)
|-..=+..++.+.+.|++.++..+++.|...= +..++.+||-++-.+.+.
T Consensus 122 ~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 122 QQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 12223577889999999999999999887644 448999999988777764
No 238
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=87.89 E-value=26 Score=33.51 Aligned_cols=157 Identities=10% Similarity=-0.011 Sum_probs=94.1
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcCCHHHHH
Q 011102 204 RELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAW 283 (493)
Q Consensus 204 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 283 (493)
..|...|-++.+ +..+....--.|+..+...++..+-. +.-....|...|--|-..|.+.|+.+.|.
T Consensus 110 g~y~~vg~~~q~---~~r~~~~~a~~~~~~~~~~l~a~Le~----------~L~~nP~d~egW~~Lg~~ym~~~~~~~A~ 176 (287)
T COG4235 110 GLYQAVGAPEQP---ADRLADPLAQPPAEQEMEALIARLET----------HLQQNPGDAEGWDLLGRAYMALGRASDAL 176 (287)
T ss_pred hhhhhcCCcccc---chhhhcccccCCCcccHHHHHHHHHH----------HHHhCCCCchhHHHHHHHHHHhcchhHHH
Confidence 345555666655 33333331223454445555433221 11233446778999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhc--CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 284 KLLMVAKDGGRMLDPSIYAKLILELGK--NPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWF 361 (493)
Q Consensus 284 ~l~~~m~~~g~~pd~~t~~~li~~~~~--~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 361 (493)
.-|....+.- .+++..+..+-.++.. .+....++.++|+++... -.-|+.+-.-|-..+...|++.+|...|+.|
T Consensus 177 ~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~lLA~~afe~g~~~~A~~~Wq~l 253 (287)
T COG4235 177 LAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALSLLAFAAFEQGDYAEAAAAWQML 253 (287)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 9999887731 1344444444333322 224557888899988764 1234444555556788888999999999888
Q ss_pred HHcCCCCCHHHHHHHHH
Q 011102 362 THSGRDPTVVMYTTLIH 378 (493)
Q Consensus 362 ~~~g~~p~~~ty~~li~ 378 (493)
.+. .|.-..+..+|.
T Consensus 254 L~~--lp~~~~rr~~ie 268 (287)
T COG4235 254 LDL--LPADDPRRSLIE 268 (287)
T ss_pred Hhc--CCCCCchHHHHH
Confidence 865 343344455444
No 239
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.59 E-value=13 Score=35.36 Aligned_cols=118 Identities=9% Similarity=0.039 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhc-CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011102 278 NLKLAWKLLMVAKD-GGRMLDPSIYAKLILELGK-NPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVE 355 (493)
Q Consensus 278 ~~~~A~~l~~~m~~-~g~~pd~~t~~~li~~~~~-~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 355 (493)
.+.+|+++|+...- ..+--|..+...+++.... .......-.++.+-+....+-.++..+...+|..+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666552211 2234455555555555544 211222222333333333244556666666666666666666666
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 011102 356 SLFHWFTHS-GRDPTVVMYTTLIHSRLSEKKCREALTVVWN 395 (493)
Q Consensus 356 ~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 395 (493)
++++.-... +..-|..-|...|+.-...|+..-..+++++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 666655433 4444566666666666666665555555543
No 240
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.59 E-value=8.6 Score=36.92 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 385 ~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
+.++++-++..=.+-|+-||..+++.+|+.+.+.+++.+|.++.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344555555554555555555555555555555555555555544444
No 241
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.19 E-value=60 Score=37.00 Aligned_cols=115 Identities=9% Similarity=0.044 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH-
Q 011102 332 NLSQQDCTAIMKVG----IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP- 406 (493)
Q Consensus 332 ~p~~~~~~~li~~~----~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~- 406 (493)
.|+...+..+..+| ...+.+++|--.|+..-+ ----+.+|-.+|+|.+|+.+..+|... -|..
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHH
Confidence 45555555444443 455667777666654321 123467788888888888888777532 1222
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 407 -AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466 (493)
Q Consensus 407 -ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 466 (493)
+--.|+.-+...++.-+|-++..+.... +.-.+..||+...|++|..+-..-
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 2356777788889888888888776532 344566677888888888765543
No 242
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.17 E-value=7.3 Score=37.14 Aligned_cols=79 Identities=9% Similarity=-0.003 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 011102 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA-----SNCLFDLPAYR 409 (493)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~-----~gi~pd~~ty~ 409 (493)
..++..++..+..+|+.+.+.+.++++.... +-|...|-.||.+|.+.|+...|+..++.+.+ .|+.|-..+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 5678889999999999999999999987542 44788899999999999999999999998865 48999888777
Q ss_pred HHHHH
Q 011102 410 VVIKL 414 (493)
Q Consensus 410 ~li~~ 414 (493)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66555
No 243
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.00 E-value=20 Score=31.34 Aligned_cols=133 Identities=14% Similarity=0.158 Sum_probs=84.9
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHH
Q 011102 320 TLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK--KCREALTVVWNME 397 (493)
Q Consensus 320 ~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g--~~~~A~~l~~~M~ 397 (493)
+.+..+.+. ++.|+...|..+|+.+.+.|++.. +..+...++-+|.......+-.+.... -..-|++++.++.
T Consensus 15 EYirSl~~~-~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 15 EYIRSLNQH-NIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 444445555 788898999999999999988554 455556677777776666665444432 1334445554443
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 398 ~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
. .+..+++.+...|++-+|.++.+..... +......++++-.+.++...-..+++-..++
T Consensus 90 ~--------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 T--------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred h--------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 3677888888899999999888775321 2223355677777777766555555555443
No 244
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=86.64 E-value=21 Score=31.23 Aligned_cols=199 Identities=18% Similarity=0.067 Sum_probs=84.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH-
Q 011102 266 LEATAKGFVKGGNLKLAWKLLMVAKDG-GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMK- 343 (493)
Q Consensus 266 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~- 343 (493)
+......+...+.+..+...+...... ........+......+... +.+..+...+...... ...+ .........
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~ 138 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEAL-GKYEEALELLEKALAL-DPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH-hhHHHHHHHHHHHHcC-CCCc-chHHHHHHHH
Confidence 333444444444444444444444331 1112223333333333333 4445555555544432 1111 111111111
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011102 344 VGIRLQKFGVVESLFHWFTHSGR--DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDI 421 (493)
Q Consensus 344 ~~~~~g~~~~A~~l~~~m~~~g~--~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~ 421 (493)
.+...|+++.|...|.+...... ......+......+...++.++|...+.+............+..+-..+...++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45555555555555555532110 0122333333333445555556665555554432111244455555555555556
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 422 SRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 422 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
+.|...+.......-. ....+..+...+...|..+++...+.+..+
T Consensus 219 ~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666665555532211 123333333333344555555555555443
No 245
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.20 E-value=11 Score=33.52 Aligned_cols=97 Identities=13% Similarity=0.022 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHH---HCCCCCCHHHHHH
Q 011102 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL--PAYRVVIKLFVALNDISRAIRYFSKLK---EAGFCPTYDIYRD 445 (493)
Q Consensus 371 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~--~ty~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~ty~~ 445 (493)
..+..+..-|++.|+.++|++.+.++.+....+.. ..+-.+|......|++..+.....+.. +.|-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 55777788888888888888888888876554443 356777788888888888877776655 3332222222112
Q ss_pred HHHH--HHHcCCHHHHHHHHHHHH
Q 011102 446 MIRI--FMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 446 li~~--~~~~g~~~~A~~l~~~m~ 467 (493)
...| +...|++.+|-++|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 2222 234678888887776654
No 246
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.16 E-value=12 Score=35.13 Aligned_cols=97 Identities=12% Similarity=0.011 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCC-HHHHHHH
Q 011102 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSGR--DPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS-NCLFD-LPAYRVV 411 (493)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~-gi~pd-~~ty~~l 411 (493)
..|+.-++.| +.|++..|...|....+..- .-....+-.|-.++...|+.++|..+|..+.+. +-.|- ..++--|
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3577666654 56668888888877765421 112234566777888888888888888777654 11121 1345555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 011102 412 IKLFVALNDISRAIRYFSKLKE 433 (493)
Q Consensus 412 i~~~~~~g~~~~A~~~~~~m~~ 433 (493)
-....+.|+.++|..+|++..+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 5666777778888887777763
No 247
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.85 E-value=31 Score=32.95 Aligned_cols=144 Identities=10% Similarity=0.102 Sum_probs=100.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHc-CC-CHHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 011102 338 CTAIMKVGIRLQKFGVVESLFHWFTH-SGRDPTVVMYTTLIHSRLS-EK-KCREALTVVWNMEA-SNCLFDLPAYRVVIK 413 (493)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~ty~~li~~~~~-~g-~~~~A~~l~~~M~~-~gi~pd~~ty~~li~ 413 (493)
|..|+. +...+.+|+++|+.... ..+--|...-..|++.... .+ ....-.++.+-+.. .|-.++..+...+|.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555443 23346778888874332 2345567777777777776 22 33334445554443 356788889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHCCCccCHHHHHHHHHh
Q 011102 414 LFVALNDISRAIRYFSKLKEA-GFCPTYDIYRDMIRIFMASGRLAKCRDVCKE-----AEMAGFKLDKQTVVELLQI 484 (493)
Q Consensus 414 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~-----m~~~g~~pd~~t~~~Ll~~ 484 (493)
.+++.+++..-.++++.-... +..-|...|..+|+.....|+..-..++.++ +++.|+..+...-..|-++
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence 999999999999999887744 5666889999999999999999877776655 2455666677666666554
No 248
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.76 E-value=7.2 Score=30.83 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHH
Q 011102 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK-EAGFCPTYDIYRDMIR 448 (493)
Q Consensus 388 ~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~ty~~li~ 448 (493)
+..+-++.+....+.|+.....+.+.+|.+.+++..|.++|+..+ +.|-+ ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455555555556667777777777777777777777777777766 33322 225665554
No 249
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=85.23 E-value=27 Score=31.13 Aligned_cols=99 Identities=9% Similarity=0.009 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHH
Q 011102 296 LDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHS---GRDPTVVM 372 (493)
Q Consensus 296 pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t 372 (493)
|+..---.|-.++.+. |+..+|...|++...- -+.-|....-.+-++....+++..|...++++-+. +-.||.
T Consensus 87 pTvqnr~rLa~al~el-Gr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~-- 162 (251)
T COG4700 87 PTVQNRYRLANALAEL-GRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG-- 162 (251)
T ss_pred hhHHHHHHHHHHHHHh-hhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--
Confidence 3333333444444444 5555555555554432 23344444444445555555555555555554432 122332
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011102 373 YTTLIHSRLSEKKCREALTVVWNMEA 398 (493)
Q Consensus 373 y~~li~~~~~~g~~~~A~~l~~~M~~ 398 (493)
--.+-..|...|+..+|+.-|+....
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 12333445555555555555555444
No 250
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.87 E-value=41 Score=32.96 Aligned_cols=67 Identities=10% Similarity=0.082 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 403 FDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP---TYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 403 pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
....+|..+...+.+.|.++.|...+..+...+... +....-.-.+.+...|+.++|...+++..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345678888889999999999999998887644211 2233344556677888999999988888763
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.79 E-value=14 Score=34.82 Aligned_cols=98 Identities=12% Similarity=0.054 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCH-HHHHHH
Q 011102 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNC--LFDLPAYRVVIKLFVALNDISRAIRYFSKLK-EAGFCPTY-DIYRDM 446 (493)
Q Consensus 371 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi--~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~-~ty~~l 446 (493)
..|+.-++.| +.|++.+|.+.|..-.+..- .-....+=.|-..+...|+.++|..+|..+. +.+-.|-. ..+--|
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3688777755 55679999999999887521 1122345568899999999999999999988 44443433 566677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC
Q 011102 447 IRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 447 i~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
-....+.|+.++|..+|++..+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 77888999999999999999864
No 252
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.69 E-value=27 Score=30.71 Aligned_cols=131 Identities=9% Similarity=-0.029 Sum_probs=66.6
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HH--HHHcCCH
Q 011102 346 IRLQKFGVVESLFHWFTHSGRDPTVV-MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI-KL--FVALNDI 421 (493)
Q Consensus 346 ~~~g~~~~A~~l~~~m~~~g~~p~~~-ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li-~~--~~~~g~~ 421 (493)
++.++.++|+.-|.++.+.|..--.+ .---+-......|+-..|...|++.-...-.|-..-=.+=+ .+ +...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45566666666666666554432111 11111223445666777777777665554444333111111 11 3456666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHH
Q 011102 422 SRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476 (493)
Q Consensus 422 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 476 (493)
++...-.+-+...|-.--...-.+|--+-.+.|++.+|.+.|+.+....-.|-.+
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprni 203 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNI 203 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHH
Confidence 6666665555433322222333445455556777777777777766554455433
No 253
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.62 E-value=20 Score=39.02 Aligned_cols=79 Identities=11% Similarity=0.138 Sum_probs=38.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHH
Q 011102 273 FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFG 352 (493)
Q Consensus 273 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 352 (493)
+.+.|++++|...|-+-... +.| ..+|.-|-.. .++..-..+++.+.+. |+ .+...-+.||++|.|.++.+
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda-q~IknLt~YLe~L~~~-gl-a~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA-QRIKNLTSYLEALHKK-GL-ANSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH-HHHHHHHHHHHHHHHc-cc-ccchhHHHHHHHHHHhcchH
Confidence 34556666665555443321 111 2234444444 4555555555555554 44 23344455666666666655
Q ss_pred HHHHHHHH
Q 011102 353 VVESLFHW 360 (493)
Q Consensus 353 ~A~~l~~~ 360 (493)
.-.++.+.
T Consensus 449 kL~efI~~ 456 (933)
T KOG2114|consen 449 KLTEFISK 456 (933)
T ss_pred HHHHHHhc
Confidence 55544443
No 254
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=84.56 E-value=31 Score=31.21 Aligned_cols=152 Identities=10% Similarity=0.053 Sum_probs=83.1
Q ss_pred HhcCCCCHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 011102 308 LGKNPDKYMLVMTLLDELGQRD-DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386 (493)
Q Consensus 308 ~~~~~~~~~~a~~l~~~m~~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 386 (493)
+... |++.+|.+.|+.+.... +-.--....-.+..++.+.|+++.|...|+++.+.--.-...-+...+.|.+.....
T Consensus 15 ~~~~-g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~ 93 (203)
T PF13525_consen 15 ALQQ-GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI 93 (203)
T ss_dssp HHHC-T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH
T ss_pred HHHC-CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC
Confidence 3344 78899999998887652 112223345566778888899999999998876542221223344444444432222
Q ss_pred HHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011102 387 REALTVVWNMEASNC---LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463 (493)
Q Consensus 387 ~~A~~l~~~M~~~gi---~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 463 (493)
.... +..... .--..+|..+|.-|-......+|...+..+.+.= ...--.+.+-|.+.|.+..|..-+
T Consensus 94 ~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l----a~~e~~ia~~Y~~~~~y~aA~~r~ 164 (203)
T PF13525_consen 94 PGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL----AEHELYIARFYYKRGKYKAAIIRF 164 (203)
T ss_dssp HHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred ccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcccHHHHHHHH
Confidence 2221 000000 0012356667777777777777777666665210 011122556678888888888888
Q ss_pred HHHHHC
Q 011102 464 KEAEMA 469 (493)
Q Consensus 464 ~~m~~~ 469 (493)
+.+.+.
T Consensus 165 ~~v~~~ 170 (203)
T PF13525_consen 165 QYVIEN 170 (203)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887764
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.49 E-value=42 Score=32.74 Aligned_cols=202 Identities=9% Similarity=-0.066 Sum_probs=127.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHH----HHHHHHcCC
Q 011102 275 KGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI----MKVGIRLQK 350 (493)
Q Consensus 275 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~l----i~~~~~~g~ 350 (493)
-.|+..+|...++++.+. .+.|...++-.=++|.-. |+...-...++++... ..+|...|+-+ --++..+|-
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~-G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYN-GNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhc-cchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 357778888888888764 456777888788888888 8888888888888754 45665444433 234457899
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011102 351 FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS---NCLFDLPAYRVVIKLFVALNDISRAIRY 427 (493)
Q Consensus 351 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~---gi~pd~~ty~~li~~~~~~g~~~~A~~~ 427 (493)
+++|++.-++-.+-+ .-|..+-.++-+.+-.+|++.++.++..+-... +-..-...|=..--.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999888765432 456777888889999999999999988765432 1111122233333345666899999999
Q ss_pred HHHHH-HCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHH-----CCCccCHHHHHHH
Q 011102 428 FSKLK-EAGFCPTYDIY---RDMIRIFMASGRLAKCRDVCKEAEM-----AGFKLDKQTVVEL 481 (493)
Q Consensus 428 ~~~m~-~~g~~p~~~ty---~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~~~L 481 (493)
|+.=. ..--+-|.+.- .-+.....+.-.+.+-.++-+.+-. ..+.-|+.||-.+
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l~d~a~~~~d~~~~itt~~~~ 332 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSLTDKAMWYQDWLFDITTIWAL 332 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhhcchhhhhhhhhhhhhHHhhh
Confidence 98654 32223344332 2223333344444444444444432 2445556665544
No 256
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.47 E-value=8.9 Score=30.01 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHH
Q 011102 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK-EAGFCPTYDIYRDMIR 448 (493)
Q Consensus 385 ~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~ty~~li~ 448 (493)
+.-++.+-++.+....+.|+.....+.++||.+.+++..|.++|+..+ +.|. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 444555666666666677777777777777777777777777777666 3332 3445665554
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.24 E-value=40 Score=32.28 Aligned_cols=142 Identities=12% Similarity=0.078 Sum_probs=80.1
Q ss_pred HhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 011102 308 LGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387 (493)
Q Consensus 308 ~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 387 (493)
.... |++.+|..+|+..... ..-+...--.+..+|...|+++.|..+++.+...--.........=|.-+.+.....
T Consensus 144 ~~~~-e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 144 LIEA-EDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhc-cchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3444 7777777777776554 112234445666777788888888888887654322222222223334444444444
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHHcCCH
Q 011102 388 EALTVVWNMEASNCLF-DLPAYRVVIKLFVALNDISRAIRYFSKLK--EAGFCPTYDIYRDMIRIFMASGRL 456 (493)
Q Consensus 388 ~A~~l~~~M~~~gi~p-d~~ty~~li~~~~~~g~~~~A~~~~~~m~--~~g~~p~~~ty~~li~~~~~~g~~ 456 (493)
+..++-.+... .| |...--.+-..+...|+.++|.+.+-.+. +.|.. |...=..|++.+.--|.-
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPA 288 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCC
Confidence 44444444433 25 44444556666777888888877665555 34444 445556666666666633
No 258
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=84.04 E-value=2.7 Score=26.11 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 442 IYRDMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 442 ty~~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
+|+.|-..|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888744
No 259
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=83.95 E-value=16 Score=31.01 Aligned_cols=81 Identities=5% Similarity=-0.101 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011102 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSG--RDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413 (493)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~ 413 (493)
..|+.-...+ +.|++++|.+.|+.+...- -.-....--.|+.+|.+.+++++|...+++..+..-.--.+-|.-.+.
T Consensus 12 ~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 3344433333 5567777777777766431 111234445566677777777777777766555432111234555555
Q ss_pred HHHH
Q 011102 414 LFVA 417 (493)
Q Consensus 414 ~~~~ 417 (493)
|++.
T Consensus 91 gL~~ 94 (142)
T PF13512_consen 91 GLSY 94 (142)
T ss_pred HHHH
Confidence 5544
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=83.66 E-value=16 Score=37.54 Aligned_cols=100 Identities=14% Similarity=0.104 Sum_probs=54.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHH
Q 011102 375 TLIHSRLSEKKCREALTVVWNMEASN-CLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGF-CPTYDIYRDMIRIFMA 452 (493)
Q Consensus 375 ~li~~~~~~g~~~~A~~l~~~M~~~g-i~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~ty~~li~~~~~ 452 (493)
-|-..+-+.|+.++|.+.|.+|.+.. ..-+....-.||.++...+...++..++.+..+... +--..+|+..+-.+-.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 34555556788888888888776532 222334566777888888888888887777643222 1123445543332222
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHHHH
Q 011102 453 SGRLAKCRDVCKEAEMAGFKLDKQTV 478 (493)
Q Consensus 453 ~g~~~~A~~l~~~m~~~g~~pd~~t~ 478 (493)
.|+-- --+...++|+.|....-
T Consensus 344 v~d~f----s~e~a~rRGls~ae~~a 365 (539)
T PF04184_consen 344 VGDKF----SPEAASRRGLSPAEMNA 365 (539)
T ss_pred hcccc----CchhhhhcCCChhHHHH
Confidence 22211 01223456776666553
No 261
>PRK15331 chaperone protein SicA; Provisional
Probab=83.14 E-value=13 Score=32.39 Aligned_cols=87 Identities=10% Similarity=-0.025 Sum_probs=55.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 011102 345 GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424 (493)
Q Consensus 345 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A 424 (493)
+...|++++|..+|.-+...+. -|..-|..|-.++-..+++++|...|...-..+. -|...+--.=.+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 3467888888888887765321 2333355565666667788888888877554332 2222233444567777888888
Q ss_pred HHHHHHHHH
Q 011102 425 IRYFSKLKE 433 (493)
Q Consensus 425 ~~~~~~m~~ 433 (493)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888877765
No 262
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=82.27 E-value=3.2 Score=25.72 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAK 290 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~ 290 (493)
+|+.|-..|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677788888888888888887743
No 263
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=82.21 E-value=66 Score=33.31 Aligned_cols=112 Identities=11% Similarity=-0.002 Sum_probs=52.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHH-HHHHHHHHHHcC
Q 011102 271 KGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQD-CTAIMKVGIRLQ 349 (493)
Q Consensus 271 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~-~~~li~~~~~~g 349 (493)
++|.+.++.+.|...|.+.......||..+= . ...++++...+... -+.|.... .-.--+.+.+.|
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~---------l-k~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSK---------L-KEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHH---------H-HHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhcc
Confidence 3555567777777777776554444443321 1 12222222222221 11222110 001133444556
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011102 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396 (493)
Q Consensus 350 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M 396 (493)
++..|...|.++.... +-|...|...--+|.+.|.+..|++=-+.-
T Consensus 373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ 418 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKC 418 (539)
T ss_pred CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666666666655443 335555666666666666665555544433
No 264
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=82.19 E-value=30 Score=29.34 Aligned_cols=85 Identities=12% Similarity=0.135 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011102 299 SIYAKLILELGKNPDKYMLVMTLLDELGQRDDL-NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI 377 (493)
Q Consensus 299 ~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 377 (493)
..|+.-...+- . |++++|.+.|+.+..+.-. .-....--.++.+|.+.|++++|...++.+.+..-.---+-|-..+
T Consensus 12 ~ly~~a~~~l~-~-~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 12 ELYQEAQEALQ-K-GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHH-h-CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 34444444433 3 7888888888888775211 1234455677888889999999998888887654333335566666
Q ss_pred HHHHcCCC
Q 011102 378 HSRLSEKK 385 (493)
Q Consensus 378 ~~~~~~g~ 385 (493)
.|++.-..
T Consensus 90 ~gL~~~~~ 97 (142)
T PF13512_consen 90 RGLSYYEQ 97 (142)
T ss_pred HHHHHHHH
Confidence 66665443
No 265
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.86 E-value=19 Score=28.50 Aligned_cols=76 Identities=14% Similarity=0.103 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 011102 407 AYRVVIKLFVALNDI--SRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483 (493)
Q Consensus 407 ty~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~ 483 (493)
.|++=...|....+. -+..+-++.+....+.|+.....+.+.+|-|.+++..|.++|+-.+.+ +.+....|..+++
T Consensus 10 eF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 10 EFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 344444445544433 366777888888999999999999999999999999999999998754 2333338888887
No 266
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=81.43 E-value=30 Score=28.89 Aligned_cols=91 Identities=13% Similarity=0.000 Sum_probs=63.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHH---HHHHHcC
Q 011102 344 VGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS-NCLFDLPAYRVVI---KLFVALN 419 (493)
Q Consensus 344 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~-gi~pd~~ty~~li---~~~~~~g 419 (493)
+++..|+++.|++.|.+-... .+-....||.--+++.-.|+.++|++=+++..+. |-+ ......+.+ ..|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 567889999999999876532 1346678999999999999999999888887654 333 222222222 3366778
Q ss_pred CHHHHHHHHHHHHHCCC
Q 011102 420 DISRAIRYFSKLKEAGF 436 (493)
Q Consensus 420 ~~~~A~~~~~~m~~~g~ 436 (493)
+.+.|..=|+.-.+-|-
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 88888888877665553
No 267
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=80.53 E-value=57 Score=31.43 Aligned_cols=141 Identities=7% Similarity=0.020 Sum_probs=68.9
Q ss_pred hHHHhhccCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCC----------CCHHHHHHHH
Q 011102 253 KLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNP----------DKYMLVMTLL 322 (493)
Q Consensus 253 ~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~----------~~~~~a~~l~ 322 (493)
++..|.........|.+|..+.+.+.-+.-+++| +|+..+-...-..+...+ .....|.+-+
T Consensus 186 ~~~lFk~~~~Ek~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~agL~elvey~~~q~~~~a~kEl 257 (412)
T KOG2297|consen 186 AVKLFKEWLVEKDINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEGARKEL 257 (412)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344554444555677777777777666555554 355444333333333320 1222222111
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHcCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011102 323 DELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLF-HWFTHSGRDPTV----VMYTTLIHSRLSEKKCREALTVVWNME 397 (493)
Q Consensus 323 ~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~-~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~M~ 397 (493)
+ ..|.+-..+...+++..... ++|++..+ |+. +.|.++|++---+ +-.++..+-.
T Consensus 258 q---------------~~L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWn----Kkeelva~qa 317 (412)
T KOG2297|consen 258 Q---------------KELQEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWN----KKEELVAEQA 317 (412)
T ss_pred H---------------HHHHHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhc----hHHHHHHHHH
Confidence 1 12222233334455555444 45665554 444 3466666654433 3333322211
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011102 398 ASNCLFDLPAYRVVIKLFVALNDISRAI 425 (493)
Q Consensus 398 ~~gi~pd~~ty~~li~~~~~~g~~~~A~ 425 (493)
- --..+|.-|+.++|..|+.+.++
T Consensus 318 l----rhlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 318 L----RHLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred H----HHHHhhhHHHHHHhcCChHHHHH
Confidence 1 12457899999999999876553
No 268
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.46 E-value=50 Score=30.80 Aligned_cols=166 Identities=11% Similarity=0.059 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhc-CCCCCCH--HHHHHHHHHHHHcCCHHHHH
Q 011102 279 LKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQR-DDLNLSQ--QDCTAIMKVGIRLQKFGVVE 355 (493)
Q Consensus 279 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~-~g~~p~~--~~~~~li~~~~~~g~~~~A~ 355 (493)
.+.|.-+.++|.+.. --..-|+.-...|..+ |..+.|-..++..-+. .++.|+. ..|..-+...-..++...|.
T Consensus 74 yEqaamLake~~kls--Evvdl~eKAs~lY~E~-GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~ 150 (308)
T KOG1585|consen 74 YEQAAMLAKELSKLS--EVVDLYEKASELYVEC-GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF 150 (308)
T ss_pred HHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHh-CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 344555555554421 1122355566666666 6666655555543211 1244442 23333333333333333333
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 011102 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS----NCLFDL-PAYRVVIKLFVALNDISRAIRYFSK 430 (493)
Q Consensus 356 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----gi~pd~-~ty~~li~~~~~~g~~~~A~~~~~~ 430 (493)
+++ ...-..|.+..++++|-..|.+-... .--++. ..|.+.|-.+....++..|.+.++.
T Consensus 151 el~---------------gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 151 ELY---------------GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHH---------------HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 333 33445566777777766555432211 111222 2355666667777899999999987
Q ss_pred HH---HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011102 431 LK---EAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463 (493)
Q Consensus 431 m~---~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 463 (493)
-. ...-.-+..+...||.+| ..|+.+++.+++
T Consensus 216 ~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 216 CSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred hhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 43 222234677888899888 558888877653
No 269
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.67 E-value=12 Score=39.09 Aligned_cols=153 Identities=17% Similarity=0.114 Sum_probs=98.0
Q ss_pred hccCCCCHHHHHHHHhhhcccCcHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHH
Q 011102 176 GLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLE 255 (493)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~ 255 (493)
.+.-.++++.|-.++...+ +..-+.+.+-+-+.|..++|+++--+ ||.. | ....+.|+++.+..+
T Consensus 595 t~vmrrd~~~a~~vLp~I~-k~~rt~va~Fle~~g~~e~AL~~s~D--------~d~r-F----elal~lgrl~iA~~l- 659 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIP-KEIRTKVAHFLESQGMKEQALELSTD--------PDQR-F----ELALKLGRLDIAFDL- 659 (794)
T ss_pred HHhhhccccccccccccCc-hhhhhhHHhHhhhccchHhhhhcCCC--------hhhh-h----hhhhhcCcHHHHHHH-
Confidence 3444577777777766666 56677788888888888888776321 2211 1 222345654443333
Q ss_pred HhhccCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCH
Q 011102 256 NFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQ 335 (493)
Q Consensus 256 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~ 335 (493)
-.+..+..-|..|-++..+.|++..|.+.|....+ |..|+-.+... |+.+....+-...++. |.
T Consensus 660 -a~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~-g~~~~l~~la~~~~~~-g~---- 723 (794)
T KOG0276|consen 660 -AVEANSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSS-GNAEGLAVLASLAKKQ-GK---- 723 (794)
T ss_pred -HHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhc-CChhHHHHHHHHHHhh-cc----
Confidence 44555667788888888889999999888887665 45666666666 6655555555555544 32
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 336 QDCTAIMKVGIRLQKFGVVESLFHWF 361 (493)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~l~~~m 361 (493)
.|...-+|...|+++++.+++.+-
T Consensus 724 --~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 --NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred --cchHHHHHHHcCCHHHHHHHHHhc
Confidence 244455667778888888777643
No 270
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.97 E-value=18 Score=28.31 Aligned_cols=64 Identities=14% Similarity=0.056 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHh
Q 011102 420 DISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484 (493)
Q Consensus 420 ~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~~ 484 (493)
+.-++.+-++.+....+.|+...-.+-+++|-|.+++..|.++|+-.+.+ +..+..+|..+++-
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHH
Confidence 55677888888889999999999999999999999999999999988733 22256688888873
No 271
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=78.79 E-value=44 Score=29.12 Aligned_cols=192 Identities=16% Similarity=0.022 Sum_probs=136.3
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 011102 276 GGNLKLAWKLLMVAKDGGRM-LDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVV 354 (493)
Q Consensus 276 ~g~~~~A~~l~~~m~~~g~~-pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 354 (493)
.+....+...+......... .....+......+... +.+..+...+...............+......+...++...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKL-GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEA 114 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHc-ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHH
Confidence 45566666666666654422 1356677777788888 889999888888764202334566777777888888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 355 ESLFHWFTHSGRDPTVVMYTTLIH-SRLSEKKCREALTVVWNMEASNC--LFDLPAYRVVIKLFVALNDISRAIRYFSKL 431 (493)
Q Consensus 355 ~~l~~~m~~~g~~p~~~ty~~li~-~~~~~g~~~~A~~l~~~M~~~gi--~pd~~ty~~li~~~~~~g~~~~A~~~~~~m 431 (493)
.+.+.........+. ........ .+...|++++|...+.+.....- ......+......+...++.+.|...+...
T Consensus 115 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 115 LELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 999999886544431 22233333 78999999999999999855211 123444555555578899999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 432 KEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 432 ~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
...........+..+-..+...+++++|...+......
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence 85432214677888889999999999999999988764
No 272
>PHA02875 ankyrin repeat protein; Provisional
Probab=78.34 E-value=72 Score=32.30 Aligned_cols=11 Identities=0% Similarity=-0.164 Sum_probs=5.1
Q ss_pred CCHHHHHHHHh
Q 011102 181 KDVAEVLDKCG 191 (493)
Q Consensus 181 ~~~~~a~~~~~ 191 (493)
|+++.+..+++
T Consensus 13 g~~~iv~~Ll~ 23 (413)
T PHA02875 13 GELDIARRLLD 23 (413)
T ss_pred CCHHHHHHHHH
Confidence 55544444443
No 273
>PRK09687 putative lyase; Provisional
Probab=78.14 E-value=66 Score=30.84 Aligned_cols=234 Identities=13% Similarity=-0.048 Sum_probs=137.4
Q ss_pred CHHHHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011102 231 DDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGN----LKLAWKLLMVAKDGGRMLDPSIYAKLIL 306 (493)
Q Consensus 231 d~~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~pd~~t~~~li~ 306 (493)
|.......+.++...|.-+....+.....-.+...=...+.++++.|+ .+++..++..+... .+|..+-...+.
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~ 113 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAIN 113 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 333444444444444432222222222222233333445556666665 34677777766332 267666666666
Q ss_pred HHhcCCCC-----HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011102 307 ELGKNPDK-----YMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRL 381 (493)
Q Consensus 307 ~~~~~~~~-----~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~ 381 (493)
+++.. +. ...+.+.+...... ++..+--..+.++++.|+. +|...+-.+.+ .+|...=..-+.++.
T Consensus 114 aLG~~-~~~~~~~~~~a~~~l~~~~~D----~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A~~aLg 184 (280)
T PRK09687 114 ATGHR-CKKNPLYSPKIVEQSQITAFD----KSTNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWAAFALN 184 (280)
T ss_pred HHhcc-cccccccchHHHHHHHHHhhC----CCHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHHHHHHh
Confidence 66665 32 12344444444333 3556666778888888874 55555555543 455555566666777
Q ss_pred cCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011102 382 SEK-KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460 (493)
Q Consensus 382 ~~g-~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 460 (493)
+.+ .-..+...+..+... +|...-...+.++++.|+ ..|...+-...+.+. ..-..+.+++..|.. +|.
T Consensus 185 ~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~ 254 (280)
T PRK09687 185 SNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLL 254 (280)
T ss_pred cCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHH
Confidence 653 245666666666643 677778888899999888 456666655555432 234688889999985 688
Q ss_pred HHHHHHHHCCCccCHHHHHHHHHhhhh
Q 011102 461 DVCKEAEMAGFKLDKQTVVELLQIEKE 487 (493)
Q Consensus 461 ~l~~~m~~~g~~pd~~t~~~Ll~~~~~ 487 (493)
..+..+.+. .||..+-...+..|++
T Consensus 255 p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 255 PVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 888888753 3477776666666553
No 274
>PRK15331 chaperone protein SicA; Provisional
Probab=78.07 E-value=22 Score=30.99 Aligned_cols=86 Identities=10% Similarity=-0.057 Sum_probs=51.5
Q ss_pred hcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 011102 309 GKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE 388 (493)
Q Consensus 309 ~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 388 (493)
... |++++|..+|.-+..- +. -+..-|..|-.++-..+++++|...|...-..+. -|...+--+-..|...|+.+.
T Consensus 48 y~~-Gk~~eA~~~F~~L~~~-d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 48 YNQ-GRLDEAETFFRFLCIY-DF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHC-CCHHHHHHHHHHHHHh-Cc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 445 7788888888776554 11 2233344555555566778888887776543321 222333344566677778888
Q ss_pred HHHHHHHHHH
Q 011102 389 ALTVVWNMEA 398 (493)
Q Consensus 389 A~~l~~~M~~ 398 (493)
|.+.|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 8887776655
No 275
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.53 E-value=6.4 Score=24.71 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 441 DIYRDMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 441 ~ty~~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
.+++.|-..|...|++++|.+++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 467778888888888888888887765
No 276
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.47 E-value=0.62 Score=39.55 Aligned_cols=53 Identities=6% Similarity=-0.012 Sum_probs=26.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 011102 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVW 394 (493)
Q Consensus 342 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~ 394 (493)
|+.+.+.+.++....+++.+...+..-+....|.++..|++.+..++.+++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444445555555555555544444445555555555555555555555554
No 277
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.46 E-value=1e+02 Score=32.76 Aligned_cols=184 Identities=12% Similarity=0.086 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHH-HHHHH-HhcCCCCHHHHHHHHHHHhh-------cCCCCCCHHHHHHHHHHHHHcC
Q 011102 279 LKLAWKLLMVAKDGGRMLDPSIYA-KLILE-LGKNPDKYMLVMTLLDELGQ-------RDDLNLSQQDCTAIMKVGIRLQ 349 (493)
Q Consensus 279 ~~~A~~l~~~m~~~g~~pd~~t~~-~li~~-~~~~~~~~~~a~~l~~~m~~-------~~g~~p~~~~~~~li~~~~~~g 349 (493)
...|.++++...+.|..-...... ....+ ++.. .+.+.|...|+.... + | +.....-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~-~d~e~a~~~l~~aa~~~~~~a~~-~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVT-QDLESAIEYLKLAAESFKKAATK-G---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhcccccc-ccHHHHHHHHHHHHHHHHHHHhh-c---CCccccHHHHHHhcCC
Confidence 345666666665555211111111 11222 3444 566666666666544 2 2 2223334444444422
Q ss_pred -----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HcCCH
Q 011102 350 -----KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS-EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV--ALNDI 421 (493)
Q Consensus 350 -----~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~-~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~--~~g~~ 421 (493)
+.+.|..+|..--+.|. |+....-..+.-... ..+...|.++|...-+.|.. +..-+-+++.... -..+.
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNL 380 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCH
Confidence 45557777766665553 444333333322222 24566777777777666652 2222222222222 33366
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 011102 422 SRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471 (493)
Q Consensus 422 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 471 (493)
+.|..+++...+.|. |-..---..+..+.. ++++.+.-.+..+.+.|.
T Consensus 381 ~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 777777777666662 221111222233333 555555555555555443
No 278
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=77.43 E-value=80 Score=32.65 Aligned_cols=76 Identities=8% Similarity=0.038 Sum_probs=46.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHH
Q 011102 340 AIMKVGIRLQKFGVVESLFHWFTHSG-RDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC-LFDLPAYRVVIKLF 415 (493)
Q Consensus 340 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi-~pd~~ty~~li~~~ 415 (493)
.+-.++.+.|+.++|.+.|.+|.+.. ..-+......||.++...+...++..++.+-.+... +--...|+..+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 34455567788888888888876432 112334556788888888888888888877543222 11235566655433
No 279
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=75.69 E-value=81 Score=30.58 Aligned_cols=155 Identities=11% Similarity=0.101 Sum_probs=87.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHhhcCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011102 305 ILELGKNPDKYMLVMTLLDELGQRDDL---NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRL 381 (493)
Q Consensus 305 i~~~~~~~~~~~~a~~l~~~m~~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~ 381 (493)
+...|..++...+|.+.|++....+.- ..+...-..++....+.|..+.-..+++.... ..+...-..++.+++
T Consensus 136 ~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa 212 (324)
T PF11838_consen 136 LSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALA 212 (324)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHT
T ss_pred HHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhh
Confidence 444442224567888888887764222 45666667777777888887666666666653 346777889999999
Q ss_pred cCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCH--HHHHHHHH----HHHHCCCCCCHHHHHHHHHHHHH--
Q 011102 382 SEKKCREALTVVWNMEASN-CLFDLPAYRVVIKLFVALNDI--SRAIRYFS----KLKEAGFCPTYDIYRDMIRIFMA-- 452 (493)
Q Consensus 382 ~~g~~~~A~~l~~~M~~~g-i~pd~~ty~~li~~~~~~g~~--~~A~~~~~----~m~~~g~~p~~~ty~~li~~~~~-- 452 (493)
...+.+...++++.....+ +++.. ...++.++...+.. +.+.+++. .+. ..+..+......++..+..
T Consensus 213 ~~~d~~~~~~~l~~~l~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~-~~~~~~~~~~~~~~~~~~~~~ 289 (324)
T PF11838_consen 213 CSPDPELLKRLLDLLLSNDKVRSQD--IRYVLAGLASSNPVGRDLAWEFFKENWDAII-KKFGTNSSALSRVIKSFAGNF 289 (324)
T ss_dssp T-S-HHHHHHHHHHHHCTSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHH-CHC-TTSHCCHHHHHCCCTT-
T ss_pred ccCCHHHHHHHHHHHcCCcccccHH--HHHHHHHHhcCChhhHHHHHHHHHHHHHHHH-HHhcCCChHHHHHHHHHhccC
Confidence 9999888888888887754 55444 34455555534433 66666654 333 2222222244555555433
Q ss_pred --cCCHHHHHHHHHH
Q 011102 453 --SGRLAKCRDVCKE 465 (493)
Q Consensus 453 --~g~~~~A~~l~~~ 465 (493)
....++..++|+.
T Consensus 290 ~t~~~~~~~~~f~~~ 304 (324)
T PF11838_consen 290 STEEQLDELEEFFED 304 (324)
T ss_dssp -SHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhh
Confidence 3344444444443
No 280
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=75.29 E-value=13 Score=24.00 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 442 IYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 442 ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
+|..+-..|.+.|++++|.++|++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666666666666666655
No 281
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=74.86 E-value=6.9 Score=25.42 Aligned_cols=29 Identities=24% Similarity=0.097 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGG 293 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 293 (493)
+|..+-..|.+.|++++|.++|++..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 46677888888999999999998888753
No 282
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.85 E-value=77 Score=30.40 Aligned_cols=135 Identities=13% Similarity=0.093 Sum_probs=88.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 011102 344 VGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423 (493)
Q Consensus 344 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~ 423 (493)
.....|++.+|..+|+.....-- -+...--.|..+|...|+.+.|..++..+-..--.........=|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 44567899999999998775421 22445567889999999999999999987654222222333334555556665555
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCccCHHHHHHHHH
Q 011102 424 AIRYFSKLKEAGFCP-TYDIYRDMIRIFMASGRLAKCRDVCKEAEMA--GFKLDKQTVVELLQ 483 (493)
Q Consensus 424 A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~Ll~ 483 (493)
...+-...-.. | |...--.+-..|...|+.++|++.+=.+.++ |+. |...-..|+.
T Consensus 222 ~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle 280 (304)
T COG3118 222 IQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLE 280 (304)
T ss_pred HHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHH
Confidence 55555555432 5 6666677888899999999999876666543 333 3333344444
No 283
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.84 E-value=7.1 Score=24.49 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Q 011102 372 MYTTLIHSRLSEKKCREALTVVWNM 396 (493)
Q Consensus 372 ty~~li~~~~~~g~~~~A~~l~~~M 396 (493)
+++.|-..|...|++++|++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4455555555555555555555543
No 284
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.67 E-value=81 Score=33.59 Aligned_cols=151 Identities=13% Similarity=-0.034 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHcCC--
Q 011102 315 YMLVMTLLDELGQRDDLNLSQQDCTAIMKV-GIRLQKFGVVESLFHWFTH-------SGRDPTVVMYTTLIHSRLSEK-- 384 (493)
Q Consensus 315 ~~~a~~l~~~m~~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~-------~g~~p~~~ty~~li~~~~~~g-- 384 (493)
...|..+++.....+.+.+-...-.....+ ++...+++.|...|+...+ .| +....+-+-..|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 467888888877763332222222333445 6678899999999999876 55 2334555666666643
Q ss_pred ---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HcCCHHH
Q 011102 385 ---KCREALTVVWNMEASNCLFDLPAYRVVIKLFVA-LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM--ASGRLAK 458 (493)
Q Consensus 385 ---~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~--~~g~~~~ 458 (493)
+.+.|+.++...-+.|. |+...+-..+.-... ..+...|.++|..-...|.. +..-+-+++.... ...+.+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence 66779999998888776 666665555544444 45678999999988887764 3333333332222 3346788
Q ss_pred HHHHHHHHHHCC
Q 011102 459 CRDVCKEAEMAG 470 (493)
Q Consensus 459 A~~l~~~m~~~g 470 (493)
|..+++...++|
T Consensus 383 A~~~~k~aA~~g 394 (552)
T KOG1550|consen 383 AFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHcc
Confidence 888888888777
No 285
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=74.02 E-value=91 Score=30.38 Aligned_cols=37 Identities=11% Similarity=0.022 Sum_probs=16.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH----CCCCCCHHHHHH
Q 011102 374 TTLIHSRLSEKKCREALTVVWNMEA----SNCLFDLPAYRV 410 (493)
Q Consensus 374 ~~li~~~~~~g~~~~A~~l~~~M~~----~gi~pd~~ty~~ 410 (493)
-..-.-||+.|+-+.|++.+.+-.+ .|.+.|++-+.+
T Consensus 108 ~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~i 148 (393)
T KOG0687|consen 108 LRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKI 148 (393)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHH
Confidence 3334445555555555554444322 244445444433
No 286
>PRK11906 transcriptional regulator; Provisional
Probab=73.35 E-value=1.1e+02 Score=31.26 Aligned_cols=58 Identities=10% Similarity=0.024 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHH
Q 011102 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL---PAYRVVIKLFVALNDISRAIRYFSK 430 (493)
Q Consensus 369 ~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~---~ty~~li~~~~~~g~~~~A~~~~~~ 430 (493)
|...-..+-.++.-.++.+.|..+|++.... .||. ..|..++. .-+|+.++|.+.+++
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~--~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVH--FHNEKIEEARICIDK 397 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHH--HHcCCHHHHHHHHHH
Confidence 4444444444444444455555555554432 2332 22222222 224555555555555
No 287
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.31 E-value=40 Score=35.48 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=81.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011102 276 GGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVE 355 (493)
Q Consensus 276 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 355 (493)
.|+++.|-.++-... ...-+.+.+-+.+. |-.++|+++--. || .-| ....+.|+++.|.
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~-g~~e~AL~~s~D--------~d-~rF----elal~lgrl~iA~ 657 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQ-GMKEQALELSTD--------PD-QRF----ELALKLGRLDIAF 657 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhc-cchHhhhhcCCC--------hh-hhh----hhhhhcCcHHHHH
Confidence 456666555443321 22334455555555 666666644211 11 111 1223556777776
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 011102 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435 (493)
Q Consensus 356 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g 435 (493)
++-.+.. +..-|..|-++....|++..|.+.|...+. |..|+-.+...|+-+.-..+-..-++.|
T Consensus 658 ~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 658 DLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 6665533 455677777777777777777777765432 5566666666666655555544444444
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 436 FCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466 (493)
Q Consensus 436 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 466 (493)
.. |.-.-+|...|+++++.+++.+-
T Consensus 723 ~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 KN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred cc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 32 44445556667777776665543
No 288
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=72.86 E-value=0.85 Score=38.70 Aligned_cols=107 Identities=9% Similarity=0.098 Sum_probs=68.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 011102 375 TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454 (493)
Q Consensus 375 ~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 454 (493)
.+|+.+.+.+....+..+++.+...+..-+....+.++..|++.+..++..++++.... + -...+++.|-+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~--y-----d~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN--Y-----DLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS--S------CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc--c-----CHHHHHHHHHhcc
Confidence 35677778889999999999999877667788999999999999988888888762211 1 2233444444444
Q ss_pred CHHHHHHHHHHHHH-------------C-------CCccCHHHHHHHHHhhhhc
Q 011102 455 RLAKCRDVCKEAEM-------------A-------GFKLDKQTVVELLQIEKES 488 (493)
Q Consensus 455 ~~~~A~~l~~~m~~-------------~-------g~~pd~~t~~~Ll~~~~~~ 488 (493)
.+++|..++.++.. - .-.+|...|..+++.|-..
T Consensus 85 l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~ 138 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDS 138 (143)
T ss_dssp SHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTS
T ss_pred hHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 45444444443321 0 1124567777777765443
No 289
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=71.68 E-value=1.1e+02 Score=30.19 Aligned_cols=195 Identities=13% Similarity=0.115 Sum_probs=109.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHH-HHHHHH
Q 011102 270 AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLIL---ELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCT-AIMKVG 345 (493)
Q Consensus 270 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~---~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~-~li~~~ 345 (493)
-+.+...|++..|+.-|....+ -|+..|-++.. .|... |+-.-|+.=+....+ .+||-..-. .--..+
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAm-Gksk~al~Dl~rVle---lKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAM-GKSKAALQDLSRVLE---LKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhh-cCCccchhhHHHHHh---cCccHHHHHHHhchhh
Confidence 3444556667777777766655 34445544432 34444 444555555555443 345522111 112345
Q ss_pred HHcCCHHHHHHHHHHHHHcCCC----CCHH--------H--HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011102 346 IRLQKFGVVESLFHWFTHSGRD----PTVV--------M--YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVV 411 (493)
Q Consensus 346 ~~~g~~~~A~~l~~~m~~~g~~----p~~~--------t--y~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~l 411 (493)
.+.|.+++|..=|+...+..-. -+.. . ....+..+.-.|+...|+.....+.+-. ..|...|..-
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~R 195 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQAR 195 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHH
Confidence 5677777777777776644211 0111 1 1233445566778888888877776643 3566777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHH
Q 011102 412 IKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476 (493)
Q Consensus 412 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 476 (493)
-.+|...|++..|..=++...+.. .-|..++--+-..+-..|+.+.++....+-.+ +.||..
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 778888888877765554443222 13444555556666677877777777776654 455554
No 290
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=71.23 E-value=16 Score=24.49 Aligned_cols=34 Identities=18% Similarity=0.416 Sum_probs=23.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHh
Q 011102 451 MASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484 (493)
Q Consensus 451 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~~ 484 (493)
-+.|-..++..++++|.+.|+.-+...|..+++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 3556667777777777777777777777776654
No 291
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.47 E-value=1.1e+02 Score=29.94 Aligned_cols=140 Identities=10% Similarity=-0.127 Sum_probs=89.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH--HHhcCCCCHHHHHHHHHHHhhcCCCCCCHHH
Q 011102 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDP--SIYAKLIL--ELGKNPDKYMLVMTLLDELGQRDDLNLSQQD 337 (493)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~li~--~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~ 337 (493)
|...++-.=++|.-.|+.+.-...+++..-. ..+|. .+|-.=|- ++... |-+++|++.-++..+- -.-|.-.
T Consensus 136 Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~-g~y~dAEk~A~ralqi--N~~D~Wa 211 (491)
T KOG2610|consen 136 DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEEC-GIYDDAEKQADRALQI--NRFDCWA 211 (491)
T ss_pred hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHh-ccchhHHHHHHhhccC--CCcchHH
Confidence 5567788888999999999999888887653 22444 33332233 33456 8999999888877654 2345566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHCCCCCCH
Q 011102 338 CTAIMKVGIRLQKFGVVESLFHWFTHS---GRDPTVVMYTTLIHSRLSEKKCREALTVVWN-MEASNCLFDL 405 (493)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~-M~~~gi~pd~ 405 (493)
-.++-+.+--.|++.++.++..+-... +--.-..-|=-..-.+...+.++.|+++|+. |...--+-|.
T Consensus 212 ~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 212 SHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 678888888899999999887664321 1101111121222234556899999999986 5443333344
No 292
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.43 E-value=23 Score=32.30 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HCCCCCCHHHHHHHHH
Q 011102 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLF-DLPAYRVVIKLFVALNDISRAIRYFSKLK--EAGFCPTYDIYRDMIR 448 (493)
Q Consensus 372 ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~p-d~~ty~~li~~~~~~g~~~~A~~~~~~m~--~~g~~p~~~ty~~li~ 448 (493)
|.+.-|+.+.+.+.+.+|+.+..+-.+. +| |.-+-..++..||-.|+|++|..-++-.- +....+-..+|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3455667777788888888877765443 23 34455567778888888888876666544 2233345566666665
Q ss_pred H
Q 011102 449 I 449 (493)
Q Consensus 449 ~ 449 (493)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 3
No 293
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=70.27 E-value=93 Score=28.93 Aligned_cols=136 Identities=11% Similarity=0.120 Sum_probs=77.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 011102 303 KLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS 382 (493)
Q Consensus 303 ~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~ 382 (493)
-.|..|++. -++..|...++++.+ | ..+ ...|--|.|..+.+--.++.+-.+..++.-+.....++| +..
T Consensus 135 RtMEiyS~t-tRFalaCN~s~KIiE-----P-IQS-RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta 204 (333)
T KOG0991|consen 135 RTMEIYSNT-TRFALACNQSEKIIE-----P-IQS-RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTA 204 (333)
T ss_pred HHHHHHccc-chhhhhhcchhhhhh-----h-HHh-hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhc
Confidence 345566665 555555555544432 1 111 223334555555555555555556666665555555554 356
Q ss_pred CCCHHHHHHHHHHHHHC-CC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011102 383 EKKCREALTVVWNMEAS-NC-----------LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450 (493)
Q Consensus 383 ~g~~~~A~~l~~~M~~~-gi-----------~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~ 450 (493)
.|++..|+.-++.-... |. .|.......++..|. .+++++|.+++.++-+.|+.|... -+.+...+
T Consensus 205 ~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 205 QGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred cchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 78888888887765432 22 245555556666554 467888888888888888876544 33444443
No 294
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=70.24 E-value=1.1e+02 Score=30.68 Aligned_cols=21 Identities=19% Similarity=0.072 Sum_probs=16.3
Q ss_pred HHHhcCCCCHHHHHHHHHHHhh
Q 011102 306 LELGKNPDKYMLVMTLLDELGQ 327 (493)
Q Consensus 306 ~~~~~~~~~~~~a~~l~~~m~~ 327 (493)
+.|.+. |++..|...|+....
T Consensus 216 n~~fK~-gk~~~A~~~Yerav~ 236 (397)
T KOG0543|consen 216 NVLFKE-GKFKLAKKRYERAVS 236 (397)
T ss_pred hHHHhh-chHHHHHHHHHHHHH
Confidence 577888 889999888877543
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=69.53 E-value=75 Score=27.55 Aligned_cols=50 Identities=16% Similarity=0.292 Sum_probs=29.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 011102 346 IRLQKFGVVESLFHWFTHSGRDPT---VVMYTTLIHSRLSEKKCREALTVVWNMEAS 399 (493)
Q Consensus 346 ~~~g~~~~A~~l~~~m~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~M~~~ 399 (493)
.+.++.+++..+++.|... .|. ..++-..+ +.+.|+|.+|..+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc
Confidence 4556677777777776543 333 23333333 35667777777777776554
No 296
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.10 E-value=49 Score=26.23 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=22.8
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 011102 379 SRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435 (493)
Q Consensus 379 ~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g 435 (493)
.+...|++++|..+.+.+ +.||...|-+|-. .+.|..+.+..-+.+|..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344455555555554433 3455554444422 24444444444444444333
No 297
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.57 E-value=1e+02 Score=28.81 Aligned_cols=146 Identities=16% Similarity=0.057 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhc----CCCCCCHHHHHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQR----DDLNLSQQDCTA 340 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~----~g~~p~~~~~~~ 340 (493)
.|+--+.+|..+|..+.|-..+++.-+. .++ .+.++|++++++-..- +..+.-...|..
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~----------------len-v~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKA----------------LEN-VKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhc-CCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 5777888888888888887777765441 112 3444555554432211 011112223444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHH
Q 011102 341 IMKVGIRLQKFGVVESLFHWFTHS----GRDPTV-VMYTTLIHSRLSEKKCREALTVVWNMEASN---CLFDLPAYRVVI 412 (493)
Q Consensus 341 li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~M~~~g---i~pd~~ty~~li 412 (493)
+-..|.+..++++|-..|.+-... .--++. ..|-+.|-.|.-..++..|.+.+++--+-+ -.-|..+...||
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 455666777777766555433211 011222 235566666777778999999998744432 123556788888
Q ss_pred HHHHHcCCHHHHHHHH
Q 011102 413 KLFVALNDISRAIRYF 428 (493)
Q Consensus 413 ~~~~~~g~~~~A~~~~ 428 (493)
.+|- .|+.+++.++.
T Consensus 236 ~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 236 TAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHhc-cCCHHHHHHHH
Confidence 8874 57777776654
No 298
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=67.05 E-value=53 Score=29.67 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 011102 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK---EAGFCPTYDIYRDMIRIFMASGRLAKC 459 (493)
Q Consensus 387 ~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~ty~~li~~~~~~g~~~~A 459 (493)
++|.+.|-.+...+..-|...--.|-.-|. ..+.+++..++.+.. ..+-.+|...+.+|+..|-+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444443333322222222222 344455555544443 122244555555555555555555554
No 299
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=66.76 E-value=1.2e+02 Score=30.30 Aligned_cols=138 Identities=11% Similarity=-0.019 Sum_probs=83.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc
Q 011102 269 TAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRL 348 (493)
Q Consensus 269 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~ 348 (493)
--+.|.+.|++..|..-|+..... | .|.+. -+.++.... .. .-...++-+.-+|.|.
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~------------l-~~~~~-~~~ee~~~~-~~--------~k~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF------------L-EYRRS-FDEEEQKKA-EA--------LKLACHLNLAACYLKL 270 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH------------h-hcccc-CCHHHHHHH-HH--------HHHHHhhHHHHHHHhh
Confidence 345788999999999998876541 0 11111 111222111 11 1233566677778888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCH-HHHHH
Q 011102 349 QKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV-ALNDI-SRAIR 426 (493)
Q Consensus 349 g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~-~~g~~-~~A~~ 426 (493)
+++..|++.-+.-.+.+ ++|+-..--=-.+|...|+++.|...|+.+.+. .|+-...+.=|..|. +.... +...+
T Consensus 271 ~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk 347 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKK 347 (397)
T ss_pred hhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887766543 455555445556777788888999988888764 566555554444443 33333 33466
Q ss_pred HHHHHH
Q 011102 427 YFSKLK 432 (493)
Q Consensus 427 ~~~~m~ 432 (493)
+|..|.
T Consensus 348 ~y~~mF 353 (397)
T KOG0543|consen 348 MYANMF 353 (397)
T ss_pred HHHHHh
Confidence 777775
No 300
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=66.72 E-value=1.2e+02 Score=28.90 Aligned_cols=160 Identities=11% Similarity=0.074 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 011102 265 VLEATAKGFVKGGNL---KLAWKLLMVAKDGGRMLD-PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTA 340 (493)
Q Consensus 265 ~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~ 340 (493)
+...++.+|...+.. ++|.++++.+.... |+ +.+|---|..+.+. ++.+++.+.+..|... +......+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~-~~~~~~~~~L~~mi~~--~~~~e~~~~~ 160 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKS-FDEEEYEEILMRMIRS--VDHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhcc-CChhHHHHHHHHHHHh--cccccchHHH
Confidence 556677777766654 45666777775533 23 34444455666666 8889999999999876 3323445555
Q ss_pred HHHHH---HHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHH---HHHcCC------CHHHHHHHHHHHHHC-CCCCCH
Q 011102 341 IMKVG---IRLQKFGVVESLFHWFTHSGRDPTVVMY--TTLIH---SRLSEK------KCREALTVVWNMEAS-NCLFDL 405 (493)
Q Consensus 341 li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~~ty--~~li~---~~~~~g------~~~~A~~l~~~M~~~-gi~pd~ 405 (493)
+++.+ .... ...|...++.+....+.|....| -.++. ...+.+ +.+...++++...+. +.+.+.
T Consensus 161 ~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 161 ILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 55555 3333 45677777777655555554311 11111 112211 255555666644332 334444
Q ss_pred HHHHHHH-------HHHHHcCCHHHHHHHHHH
Q 011102 406 PAYRVVI-------KLFVALNDISRAIRYFSK 430 (493)
Q Consensus 406 ~ty~~li-------~~~~~~g~~~~A~~~~~~ 430 (493)
.+-++++ ..+.+++++++|.++|+-
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 4444443 336678899999999874
No 301
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.66 E-value=93 Score=27.52 Aligned_cols=132 Identities=11% Similarity=0.019 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHH-HHHHHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYA-KLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQ-DCTAIM 342 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~-~~~~li 342 (493)
.|-+-++ +++.+..++|+.-|.++.+.|..-=++.-. -.-....+. |+...|...|+++-.. .-.|-.. ....|=
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~k-gdta~AV~aFdeia~d-t~~P~~~rd~ARlr 137 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQK-GDTAAAVAAFDEIAAD-TSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhc-ccHHHHHHHHHHHhcc-CCCcchhhHHHHHH
Confidence 4444443 456677888888888888866442222211 111223455 7778888888887655 2223322 222222
Q ss_pred HH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 011102 343 KV--GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS 399 (493)
Q Consensus 343 ~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~ 399 (493)
.+ +...|.++......+-+...|-.--...=.+|--+-.+.|++.+|.+.|..+...
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 22 2345666666666665554443333333445555556666777777776665544
No 302
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.14 E-value=50 Score=33.47 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=37.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCCHHH--HHHHHHHHHHcCCCchhhhHHHhhccCcHH--HHHHHHHHHHhcCC
Q 011102 203 VRELGHMNLPERALQTFCWAQKQPHLFPDDRL--LASTVEVLARHHELKVPFKLENFVSLASKG--VLEATAKGFVKGGN 278 (493)
Q Consensus 203 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t--~~~li~~~~~~g~~~~~~~l~~~~~~~~~~--~~~~li~~~~~~g~ 278 (493)
+...++.|+.+-+..+++ . |..|+... ..+.+...++.|+.+..+.+......++.. ...+.+...++.|+
T Consensus 6 L~~A~~~g~~~iv~~Ll~----~-g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 6 LCDAILFGELDIARRLLD----I-GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHHHHhCCHHHHHHHHH----C-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 445556677665555543 3 66665432 233444555666655555443333322211 11234445556666
Q ss_pred HHHHHHHH
Q 011102 279 LKLAWKLL 286 (493)
Q Consensus 279 ~~~A~~l~ 286 (493)
.+.+..++
T Consensus 81 ~~~v~~Ll 88 (413)
T PHA02875 81 VKAVEELL 88 (413)
T ss_pred HHHHHHHH
Confidence 65544443
No 303
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=64.86 E-value=84 Score=26.37 Aligned_cols=91 Identities=15% Similarity=0.041 Sum_probs=58.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHH---HHHHHHc
Q 011102 272 GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI---MKVGIRL 348 (493)
Q Consensus 272 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~l---i~~~~~~ 348 (493)
+.+..|+++.|++.|.+.... .+-....||.--.++--. |+.++|+.=+.+..+-.|-+ +...+.+. -..|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq-~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQ-GDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHc-CChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 456778888888888877663 223566788777777777 78888887777665542332 22223222 3456667
Q ss_pred CCHHHHHHHHHHHHHcC
Q 011102 349 QKFGVVESLFHWFTHSG 365 (493)
Q Consensus 349 g~~~~A~~l~~~m~~~g 365 (493)
|+-+.|..=|+.--+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 77777777777665554
No 304
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=64.27 E-value=68 Score=28.99 Aligned_cols=72 Identities=7% Similarity=-0.087 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHcCCCHHHH
Q 011102 316 MLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTH---SGRDPTVVMYTTLIHSRLSEKKCREA 389 (493)
Q Consensus 316 ~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~ty~~li~~~~~~g~~~~A 389 (493)
+.|.+.|-.+... +.- +....-..+..|.-..+.++|..++....+ .+-.+|...+.+|.+.|.+.|+.+.|
T Consensus 123 ~~A~~~fL~~E~~-~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGT-PEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCC-CCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4555555555554 222 222223333333334555555555555432 12244555555555555555555554
No 305
>PF13934 ELYS: Nuclear pore complex assembly
Probab=63.57 E-value=1.2e+02 Score=28.03 Aligned_cols=44 Identities=18% Similarity=0.056 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHhhhcccCcH-HHHHHHHHhCCChHHHHHHHHHHH
Q 011102 180 HKDVAEVLDKCGRFLRKGSL-SFTVRELGHMNLPERALQTFCWAQ 223 (493)
Q Consensus 180 ~~~~~~a~~~~~~m~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~ 223 (493)
.+++++|++.+-...-...| .-+|.++...|+.+.|+.+++.+.
T Consensus 91 ~~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~ 135 (226)
T PF13934_consen 91 HGDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAVG 135 (226)
T ss_pred hHhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcC
Confidence 37777777777654333333 367777777888888888887764
No 306
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=63.56 E-value=75 Score=28.47 Aligned_cols=89 Identities=10% Similarity=0.023 Sum_probs=47.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHH-HHHcCCC--HHHHHHHHHHHHHCCCCCCHH----HHHHHHHH
Q 011102 344 VGIRLQKFGVVESLFHWFTHS--GRDPTVVMYTTLIH-SRLSEKK--CREALTVVWNMEASNCLFDLP----AYRVVIKL 414 (493)
Q Consensus 344 ~~~~~g~~~~A~~l~~~m~~~--g~~p~~~ty~~li~-~~~~~g~--~~~A~~l~~~M~~~gi~pd~~----ty~~li~~ 414 (493)
.....|++++|..-++++.+. .++.-...|.-+.. ++|..+. +.+|.-++.-.... ..|... .+-.-|.|
T Consensus 38 ~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~-~~ps~~EL~V~~~~YilG 116 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG-RLPSPEELGVPPIAYILG 116 (204)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC-CCCCHHHcCCCHHHHHHH
Confidence 344556666666666655431 12223344566665 6666653 45666666555443 333322 12222333
Q ss_pred --------------HHHcCCHHHHHHHHHHHHH
Q 011102 415 --------------FVALNDISRAIRYFSKLKE 433 (493)
Q Consensus 415 --------------~~~~g~~~~A~~~~~~m~~ 433 (493)
..+.|+++.|.++++-|.+
T Consensus 117 l~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 117 LADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 2357888888888887763
No 307
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=62.87 E-value=61 Score=25.70 Aligned_cols=87 Identities=10% Similarity=-0.053 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 011102 314 KYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVV 393 (493)
Q Consensus 314 ~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 393 (493)
..++|..+-+.+... +-. ...+--+-+..+...|++++|..+.+.+. .||...|-+|-. .+.|..+++..-+
T Consensus 20 cHqEA~tIAdwL~~~-~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLK-GES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcC-Cch-HHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHH
Confidence 456777776666554 211 22233333456677788888888877663 788888877754 4666667666666
Q ss_pred HHHHHCCCCCCHHHHH
Q 011102 394 WNMEASNCLFDLPAYR 409 (493)
Q Consensus 394 ~~M~~~gi~pd~~ty~ 409 (493)
.+|...|- |...+|.
T Consensus 92 ~rla~sg~-p~lq~Fa 106 (115)
T TIGR02508 92 NRLAASGD-PRLQTFV 106 (115)
T ss_pred HHHHhCCC-HHHHHHH
Confidence 67766553 4444443
No 308
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=62.75 E-value=24 Score=20.97 Aligned_cols=28 Identities=11% Similarity=0.224 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 441 DIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 441 ~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
.+|..+-..|...|++++|++.|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4677777888888888888888888765
No 309
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=61.89 E-value=80 Score=27.06 Aligned_cols=48 Identities=15% Similarity=0.055 Sum_probs=23.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 011102 276 GGNLKLAWKLLMVAKDGGRMLDPS---IYAKLILELGKNPDKYMLVMTLLDELGQR 328 (493)
Q Consensus 276 ~g~~~~A~~l~~~m~~~g~~pd~~---t~~~li~~~~~~~~~~~~a~~l~~~m~~~ 328 (493)
.++.+++..+++.|.-. .|+.. +|-..| +... |+|.+|.++|.++.+.
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l--~i~r-g~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWL--LIAR-GNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHH--HHHc-CCHHHHHHHHHhhhcc
Confidence 45566666666655542 23322 222222 2233 5566666666666554
No 310
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=60.96 E-value=1.6e+02 Score=28.34 Aligned_cols=71 Identities=8% Similarity=0.066 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCccCHHHHH
Q 011102 408 YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE-----MAGFKLDKQTVV 479 (493)
Q Consensus 408 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~pd~~t~~ 479 (493)
++.+-..|..+|.+.+|.++-+...... +.+...|-.|+..|+..|+--.|.+-++.|. +.|+..|...+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 4555577888888888888887776443 2356667788888888888767766666663 347777666553
No 311
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=60.78 E-value=33 Score=22.92 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=15.7
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011102 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447 (493)
Q Consensus 417 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li 447 (493)
+.|.++++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4444555555555555555555555444443
No 312
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.36 E-value=1e+02 Score=29.38 Aligned_cols=88 Identities=16% Similarity=0.143 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011102 339 TAIMKVGIRLQKFGVVESLFHWFTH--SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416 (493)
Q Consensus 339 ~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~ 416 (493)
..=|.+++..+++.+++...-+--+ ..++|.+. -.-|--|.+.|....+.++-..-.+.--.-+...|.++...|.
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 3447788888888777654433221 23334443 3334456777888877777777665432333445777766654
Q ss_pred H-----cCCHHHHHHHH
Q 011102 417 A-----LNDISRAIRYF 428 (493)
Q Consensus 417 ~-----~g~~~~A~~~~ 428 (493)
. .|.+++|+++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 4 57888887776
No 313
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=59.77 E-value=60 Score=32.60 Aligned_cols=131 Identities=15% Similarity=0.053 Sum_probs=85.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHh----hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HcC-CCCCHH
Q 011102 301 YAKLILELGKNPDKYMLVMTLLDELG----QRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFT----HSG-RDPTVV 371 (493)
Q Consensus 301 ~~~li~~~~~~~~~~~~a~~l~~~m~----~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g-~~p~~~ 371 (493)
|..|-..|.-. |+++.|+...+.-. +-+.-..-...++.+-+++.-.|+++.|.+.|+.-. +.| -.....
T Consensus 198 ~GnLGNTyYlL-Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 198 YGNLGNTYYLL-GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hcccCceeeee-ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 44444444555 88888887766421 111112233467788888889999999998887543 222 123456
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 372 MYTTLIHSRLSEKKCREALTVVWNMEA----S-NCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 372 ty~~li~~~~~~g~~~~A~~l~~~M~~----~-gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
++-+|-++|.-..++++|+..+.+-.. . ...-....|-+|-.+|...|..++|+.+.+.-+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 788888889888899999888775321 1 122234567788888888888888887766443
No 314
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=59.03 E-value=2e+02 Score=28.83 Aligned_cols=162 Identities=10% Similarity=-0.014 Sum_probs=81.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHhc---CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 011102 269 TAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYA---KLILELGK---NPDKYMLVMTLLDELGQRDDLNLSQQDCTAIM 342 (493)
Q Consensus 269 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~---~li~~~~~---~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li 342 (493)
++-+|....+++...++.+.|...-...-..+-+ ...-++-+ . |+.++|++++..+... .-.++..+|..+-
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~-gdre~Al~il~~~l~~-~~~~~~d~~gL~G 224 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKP-GDREKALQILLPVLES-DENPDPDTLGLLG 224 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccC-CCHHHHHHHHHHHHhc-cCCCChHHHHHHH
Confidence 3334666666677777777666541000000000 11112223 3 6667777776663333 3345555555444
Q ss_pred HHHHH---------cCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHcCC-CHHHHHHHH---H-HHHHCCC---C
Q 011102 343 KVGIR---------LQKFGVVESLFHWFTHSGRDPTVVM---YTTLIHSRLSEK-KCREALTVV---W-NMEASNC---L 402 (493)
Q Consensus 343 ~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~~t---y~~li~~~~~~g-~~~~A~~l~---~-~M~~~gi---~ 402 (493)
..|-. ....++|...|.+--+. .||.++ +-+|+....... .-.+..++- . ...++|. .
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 43321 11255666666543322 344322 333433333211 112233332 2 2223342 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 403 FDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434 (493)
Q Consensus 403 pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~ 434 (493)
.|---+.+++.++.-.|+.++|.+..+.|...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 45566788999999999999999999999865
No 315
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.73 E-value=82 Score=24.23 Aligned_cols=66 Identities=6% Similarity=-0.038 Sum_probs=33.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011102 389 ALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460 (493)
Q Consensus 389 A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 460 (493)
+.++++.+.+.|+ .+......+-.+-...|+.+.|.++++.+. .|-. -|...+.++-..|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEG----WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCchhhhh
Confidence 3445555555554 223333333333334566666666666665 4422 4566666666666554443
No 316
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=57.33 E-value=29 Score=22.85 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=12.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 011102 446 MIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 446 li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555554
No 317
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=57.10 E-value=53 Score=35.02 Aligned_cols=90 Identities=10% Similarity=0.031 Sum_probs=58.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHH------HHHHHHHHHHCCCCCCHHHHHHH
Q 011102 375 TLIHSRLSEKKCREALTVVWNMEAS--NCLFDLPAYRVVIKLFVALNDISR------AIRYFSKLKEAGFCPTYDIYRDM 446 (493)
Q Consensus 375 ~li~~~~~~g~~~~A~~l~~~M~~~--gi~pd~~ty~~li~~~~~~g~~~~------A~~~~~~m~~~g~~p~~~ty~~l 446 (493)
+|+.+|..+|++..+.++++..... |-+.=...||..|+-+.+.|.++- |.++++ ..-+.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq---~a~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQ---QARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHH---HhhcCCcchHHHHH
Confidence 7888889999998888888887654 333445678888888888886532 223322 33355678888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 011102 447 IRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 447 i~~~~~~g~~~~A~~l~~~m~ 467 (493)
+++-..--.-.-..-++.+..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 877655333333444444444
No 318
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=57.07 E-value=64 Score=29.62 Aligned_cols=78 Identities=9% Similarity=-0.090 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS--NCLFDLPAYRVVIKL 414 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~--gi~pd~~ty~~li~~ 414 (493)
|.+.-|+.+.+.+.+.+|+....+=.+.. +-|.-+=..+++-||-.|+|++|..=++-.-+. ...+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44566788899999999999987765442 335666778999999999999999776655432 334556788888876
Q ss_pred H
Q 011102 415 F 415 (493)
Q Consensus 415 ~ 415 (493)
-
T Consensus 82 e 82 (273)
T COG4455 82 E 82 (273)
T ss_pred H
Confidence 3
No 319
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=56.87 E-value=1.9e+02 Score=27.90 Aligned_cols=118 Identities=10% Similarity=0.020 Sum_probs=74.3
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011102 340 AIMKVGIRLQK---FGVVESLFHWFTHSGR----DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412 (493)
Q Consensus 340 ~li~~~~~~g~---~~~A~~l~~~m~~~g~----~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li 412 (493)
.++...| |+ .++|.+.|++....+. ..+...-.+++....+.|..++-..+++..... .+..--..++
T Consensus 134 ~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l 208 (324)
T PF11838_consen 134 LLLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLL 208 (324)
T ss_dssp HHHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHH
T ss_pred HHHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHH
Confidence 4455555 44 6788999998876422 345556677888888888866655666555543 4677889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCH--HHHHHHHH
Q 011102 413 KLFVALNDISRAIRYFSKLKEAG-FCPTYDIYRDMIRIFMASGRL--AKCRDVCK 464 (493)
Q Consensus 413 ~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~ty~~li~~~~~~g~~--~~A~~l~~ 464 (493)
.+++...+.+...++++.....+ +.+.. . ..++.++...+.. +.+++.+.
T Consensus 209 ~aLa~~~d~~~~~~~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 209 SALACSPDPELLKRLLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHTT-S-HHHHHHHHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HhhhccCCHHHHHHHHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHH
Confidence 99999999999999999988754 54433 3 4455555534443 55655543
No 320
>PRK11906 transcriptional regulator; Provisional
Probab=56.80 E-value=2.4e+02 Score=29.02 Aligned_cols=148 Identities=11% Similarity=0.048 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHh-CCCCCCHH-HH-----HHHHH---HHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 011102 278 NLKLAWKLLMVAKD-GGRMLDPS-IY-----AKLIL---ELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR 347 (493)
Q Consensus 278 ~~~~A~~l~~~m~~-~g~~pd~~-t~-----~~li~---~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~ 347 (493)
..+.|+.+|.+... ..+.|+-. .| ..+.. ++........+|.++-+...+.. .-|......+-.++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHh
Confidence 35678888988872 23445533 22 22222 22221245567777777666542 2466666666666677
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011102 348 LQKFGVVESLFHWFTHSGRDPTV-VMYTTLIHSRLSEKKCREALTVVWNMEAS-NCLFDLPAYRVVIKLFVALNDISRAI 425 (493)
Q Consensus 348 ~g~~~~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~M~~~-gi~pd~~ty~~li~~~~~~g~~~~A~ 425 (493)
.|+++.|..+|++-... .||. .+|...--.+.-+|+.++|.+.+++..+. -.+.-.....-.|+.|+..+ +++|.
T Consensus 351 ~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~ 427 (458)
T PRK11906 351 SGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNI 427 (458)
T ss_pred hcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhH
Confidence 88899999999987654 5543 34444444456679999999999984443 22222333444455777665 67777
Q ss_pred HHHHH
Q 011102 426 RYFSK 430 (493)
Q Consensus 426 ~~~~~ 430 (493)
+++-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 77654
No 321
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=56.32 E-value=1.3e+02 Score=25.80 Aligned_cols=63 Identities=11% Similarity=0.038 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 011102 313 DKYMLVMTLLDELGQRDDLNLSQ---QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE 383 (493)
Q Consensus 313 ~~~~~a~~l~~~m~~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 383 (493)
++.+++..+++.|.- +.|+. .++...| +...|++++|.++|++..+.+.. ..|..-+.++|-.
T Consensus 24 ~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~---~p~~kAL~A~CL~ 89 (153)
T TIGR02561 24 ADPYDAQAMLDALRV---LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGA---PPYGKALLALCLN 89 (153)
T ss_pred CCHHHHHHHHHHHHH---hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCC---chHHHHHHHHHHH
Confidence 666777777776643 23332 2333333 34566777777777776654322 1344444444443
No 322
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=56.27 E-value=31 Score=20.48 Aligned_cols=26 Identities=19% Similarity=0.082 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011102 372 MYTTLIHSRLSEKKCREALTVVWNME 397 (493)
Q Consensus 372 ty~~li~~~~~~g~~~~A~~l~~~M~ 397 (493)
+|..+-..|...|++++|++.|++..
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 34444445555555555555555443
No 323
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=55.87 E-value=31 Score=33.13 Aligned_cols=44 Identities=18% Similarity=0.312 Sum_probs=29.6
Q ss_pred CCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011102 400 NCLFDLPA-YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIY 443 (493)
Q Consensus 400 gi~pd~~t-y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty 443 (493)
-+.||..+ |+.-|..-.+.||+++|+++++|-+..|+.--..||
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 45566655 467777777777777777777777777766444444
No 324
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=55.19 E-value=1.2e+02 Score=28.85 Aligned_cols=89 Identities=15% Similarity=0.128 Sum_probs=57.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 011102 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR 347 (493)
Q Consensus 268 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~ 347 (493)
.=|.+++..++|.+++...-+--+.--+.-+......|--|.|. +....+.++-..-.+.++ .-+...|.++..-|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv-~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKV-QEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHH
Confidence 45788888899988888765554433233344455556667777 777777777666555422 2233347776665554
Q ss_pred -----cCCHHHHHHHH
Q 011102 348 -----LQKFGVVESLF 358 (493)
Q Consensus 348 -----~g~~~~A~~l~ 358 (493)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 58888888876
No 325
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=55.19 E-value=77 Score=26.29 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHH
Q 011102 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK-EAGFCPTYDIYRDMI 447 (493)
Q Consensus 386 ~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~ty~~li 447 (493)
..+..+-++......+.|+......-+.+|.+.+++..|.++|+-.+ +.|- -...|-.++
T Consensus 65 ~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~--~k~~Y~y~v 125 (149)
T KOG4077|consen 65 GWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGA--QKQVYPYYV 125 (149)
T ss_pred HHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccc--HHHHHHHHH
Confidence 44566666666677788888888888888888888888888888877 3332 222455444
No 326
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=55.05 E-value=39 Score=19.81 Aligned_cols=27 Identities=7% Similarity=0.092 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 442 IYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 442 ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
.|..+-..|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456677778888888888888888764
No 327
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=54.94 E-value=23 Score=20.01 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=11.2
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 011102 445 DMIRIFMASGRLAKCRDVCK 464 (493)
Q Consensus 445 ~li~~~~~~g~~~~A~~l~~ 464 (493)
.+-.++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455556666666665554
No 328
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=54.78 E-value=1.2e+02 Score=29.14 Aligned_cols=143 Identities=13% Similarity=0.111 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----CCCCCHHHH
Q 011102 334 SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS-----NCLFDLPAY 408 (493)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~-----gi~pd~~ty 408 (493)
....-...|..+...|++..|+++..+..+.- . ....|+++=+ -..++++-.....++.+. -...|...|
T Consensus 126 ~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~---L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y 200 (291)
T PF10475_consen 126 TVQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRH---LSSQLQETLELIEEQLDSDLSKVCQDFDPDKY 200 (291)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 45555677778888888888888888776420 0 0011111100 012344444444444332 124678888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCHH-HHHHHHHHHHHCCCccCHHHHHHHHHhh
Q 011102 409 RVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS--GRLA-KCRDVCKEAEMAGFKLDKQTVVELLQIE 485 (493)
Q Consensus 409 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~--g~~~-~A~~l~~~m~~~g~~pd~~t~~~Ll~~~ 485 (493)
..++.||.-.|+...+.+-+..--...+. ..+.. ++..+... +..+ ...--|++|.+. -|....-.+|+++|
T Consensus 201 ~~v~~AY~lLgk~~~~~dkl~~~f~~~i~--~~~~~-vv~~~~~~~~~~~~~~~~~~y~~lC~~--v~~~~~~~cl~~l~ 275 (291)
T PF10475_consen 201 SKVQEAYQLLGKTQSAMDKLQMHFTSAIH--STTFS-VVRSYVEQSESSEERSSKMSYKDLCKQ--VPSDQFIPCLLELL 275 (291)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHhccccccccccCCHHHHHhh--CCHHHHHHHHHHHH
Confidence 88999988888776655555444333322 22333 33334332 1111 112236666543 44555667777766
Q ss_pred h
Q 011102 486 K 486 (493)
Q Consensus 486 ~ 486 (493)
+
T Consensus 276 ~ 276 (291)
T PF10475_consen 276 E 276 (291)
T ss_pred H
Confidence 4
No 329
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=54.75 E-value=1.4e+02 Score=25.84 Aligned_cols=17 Identities=12% Similarity=0.030 Sum_probs=8.8
Q ss_pred HHcCCHHHHHHHHHHHH
Q 011102 346 IRLQKFGVVESLFHWFT 362 (493)
Q Consensus 346 ~~~g~~~~A~~l~~~m~ 362 (493)
.+.|++.+|.++|+++.
T Consensus 55 i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELE 71 (160)
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 34455555555555544
No 330
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=54.58 E-value=2.1e+02 Score=27.79 Aligned_cols=65 Identities=8% Similarity=0.064 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011102 334 SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP---TVVMYTTLIHSRLSEKKCREALTVVWNMEA 398 (493)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~ty~~li~~~~~~g~~~~A~~l~~~M~~ 398 (493)
...+|..+...+.+.|.++.|...+..+...+... +....-.-.+-+-..|+..+|...+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666777777777777777777766533111 222233334555566777777777766655
No 331
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=53.64 E-value=2.3e+02 Score=27.79 Aligned_cols=135 Identities=8% Similarity=0.013 Sum_probs=80.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCC
Q 011102 293 GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFT----HSGRDP 368 (493)
Q Consensus 293 g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p 368 (493)
.++.|..-++++..+= . .++++..+..+...+..|-.--...+-..-.-||+.|+.+.|++.+.+-- ..|.+.
T Consensus 65 ~i~~D~~~l~~m~~~n--e-eki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~ki 141 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKAN--E-EKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKI 141 (393)
T ss_pred ceeccHHHHHHHHHhh--H-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccch
Confidence 3455555555554321 1 23344444444444332222223345566678999999999999887654 358888
Q ss_pred CHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 369 TVVMYTTLIHSRLS-EKKCREALTVVWNMEASNCLFDL----PAYRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 369 ~~~ty~~li~~~~~-~g~~~~A~~l~~~M~~~gi~pd~----~ty~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
|++-|.+=+.-+.. ..-+.+-++..+.|.+.|...+. .+|..+-. ....++.+|-.+|-+-.
T Consensus 142 DVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~--msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 142 DVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYC--MSVRNFKEAADLFLDSV 208 (393)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHH--HHHHhHHHHHHHHHHHc
Confidence 98877765544333 33355666666677777876664 35555533 34457888888887655
No 332
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=53.58 E-value=12 Score=31.16 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=24.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011102 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSR 380 (493)
Q Consensus 346 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~ 380 (493)
.+.|.-.+|..+|.+|.+.|-.||- |+.|+...
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456667788888888888888874 67776643
No 333
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=53.54 E-value=25 Score=23.13 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=20.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 011102 269 TAKGFVKGGNLKLAWKLLMVAKDGG 293 (493)
Q Consensus 269 li~~~~~~g~~~~A~~l~~~m~~~g 293 (493)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5678888888899988888887654
No 334
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.16 E-value=61 Score=26.05 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=21.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011102 373 YTTLIHSRLSEKKCREALTVVWNMEA 398 (493)
Q Consensus 373 y~~li~~~~~~g~~~~A~~l~~~M~~ 398 (493)
|..|+.-|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 78888888888888888888887766
No 335
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=52.96 E-value=47 Score=24.99 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=25.3
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 011102 417 ALNDISRAIRYFSKLKEAGFCPT--YDIYRDMIRIFMASGRLAKCRDV 462 (493)
Q Consensus 417 ~~g~~~~A~~~~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l 462 (493)
...+-++|+..|....+.-..+. ..++..|+.+|+..|+++++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666665553322221 23456666667776766666553
No 336
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=52.58 E-value=44 Score=19.70 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 442 IYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 442 ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
+|..+-..|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677778888888888888877654
No 337
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.37 E-value=71 Score=28.48 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 402 ~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
.|+..+|..++.++...|+.++|.++..++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555555555554
No 338
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=52.23 E-value=2e+02 Score=26.81 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 011102 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405 (493)
Q Consensus 367 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~ 405 (493)
.|.....-.++..|. .+++++|.+++.++.+.|..|..
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 344444444444333 24555555555555555555543
No 339
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=52.18 E-value=78 Score=31.84 Aligned_cols=96 Identities=10% Similarity=-0.049 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HCCC-CCCH
Q 011102 371 VMYTTLIHSRLSEKKCREALTVVWNME----ASNCL-FDLPAYRVVIKLFVALNDISRAIRYFSKLK----EAGF-CPTY 440 (493)
Q Consensus 371 ~ty~~li~~~~~~g~~~~A~~l~~~M~----~~gi~-pd~~ty~~li~~~~~~g~~~~A~~~~~~m~----~~g~-~p~~ 440 (493)
..|..|-+.|.-.|+++.|....+.=. +-|=+ .-...++.|-+++.-.|+++.|.+.|+.-. +-|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456777777777888888887665421 22221 223467777777888888888887776533 1111 1123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 441 DIYRDMIRIFMASGRLAKCRDVCKEA 466 (493)
Q Consensus 441 ~ty~~li~~~~~~g~~~~A~~l~~~m 466 (493)
.+.-+|-++|.-..++++|..++.+-
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666665543
No 340
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=51.63 E-value=2.3e+02 Score=27.31 Aligned_cols=101 Identities=11% Similarity=-0.080 Sum_probs=52.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC-------------HH----HHHHHHHHHHHcCCHHHHH
Q 011102 293 GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS-------------QQ----DCTAIMKVGIRLQKFGVVE 355 (493)
Q Consensus 293 g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~-------------~~----~~~~li~~~~~~g~~~~A~ 355 (493)
+++.|..-|-+.+...-.....++++.++....+. +.-|+ .. +++..-..|..+|.+.+|.
T Consensus 222 ~~k~Dv~e~es~~rqi~~inltide~kelv~~ykg--dyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi 299 (361)
T COG3947 222 LPKYDVQEYESLARQIEAINLTIDELKELVGQYKG--DYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAI 299 (361)
T ss_pred CccccHHHHHHHhhhhhccccCHHHHHHHHHHhcC--CcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 35556666666666555543556666666666543 22222 11 2233334555666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011102 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396 (493)
Q Consensus 356 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M 396 (493)
++-+...... +.+...|-.||..|+..|+--.|.+-++.|
T Consensus 300 ~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 300 QLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 6655544221 234455556666666666644444444444
No 341
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.56 E-value=78 Score=28.22 Aligned_cols=52 Identities=13% Similarity=0.053 Sum_probs=38.6
Q ss_pred HcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 417 ALNDISRAIRYFSKLK-EAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 417 ~~g~~~~A~~~~~~m~-~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
..++.+......+... .....|+..+|..++.++...|+.++|.++.+++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444443333 233469999999999999999999999999999875
No 342
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.50 E-value=27 Score=33.48 Aligned_cols=43 Identities=7% Similarity=0.073 Sum_probs=26.3
Q ss_pred CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 011102 331 LNLSQQD-CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMY 373 (493)
Q Consensus 331 ~~p~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 373 (493)
+.||..+ |+..|..-.+.|++++|+.+++|-++.|..--..+|
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4455444 456677777777777777777777766664444333
No 343
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=50.61 E-value=18 Score=22.07 Aligned_cols=22 Identities=9% Similarity=0.440 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHH
Q 011102 439 TYDIYRDMIRIFMASGRLAKCR 460 (493)
Q Consensus 439 ~~~ty~~li~~~~~~g~~~~A~ 460 (493)
|...|+.+-..|...|++++|.
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4566666666666666666664
No 344
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=50.59 E-value=1.3e+02 Score=30.96 Aligned_cols=84 Identities=14% Similarity=0.042 Sum_probs=38.2
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011102 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426 (493)
Q Consensus 347 ~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~ 426 (493)
..|+++.+...+...... +.-...+-.+++....+.|++++|+.+-+.|....|.-. ......-..--..|-+|++.-
T Consensus 335 ~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~-ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 335 HLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDE-EVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCCh-hheeeecccHHHHhHHHHHHH
Confidence 445555555555443211 122334455555555556666666665555555444311 111111111223344555555
Q ss_pred HHHHHH
Q 011102 427 YFSKLK 432 (493)
Q Consensus 427 ~~~~m~ 432 (493)
.|+.+.
T Consensus 413 ~wk~~~ 418 (831)
T PRK15180 413 YWKRVL 418 (831)
T ss_pred HHHHHh
Confidence 555554
No 345
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=49.49 E-value=13 Score=30.95 Aligned_cols=33 Identities=15% Similarity=0.020 Sum_probs=24.3
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011102 381 LSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415 (493)
Q Consensus 381 ~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~ 415 (493)
...|.-.+|..+|..|.+.|-.||. |+.|+...
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446667788888888888888875 77776653
No 346
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.07 E-value=4.2e+02 Score=29.87 Aligned_cols=115 Identities=16% Similarity=0.069 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhcCCCCH--HHHHHHHHHHhhcCCCCCCHHHHH-
Q 011102 266 LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLD---PSIYAKLILELGKNPDKY--MLVMTLLDELGQRDDLNLSQQDCT- 339 (493)
Q Consensus 266 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~li~~~~~~~~~~--~~a~~l~~~m~~~~g~~p~~~~~~- 339 (493)
|..|+..|...|+.++|+++|.+..+.--.-| ..-+-.++.-+.+. +.- +.+++.-++..+. .-.-....++
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l-~~~~~~Li~~y~~wvl~~-~p~~gi~Ift~ 584 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKL-GAENLDLILEYADWVLNK-NPEAGIQIFTS 584 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHh-cccchhHHHHHhhhhhcc-Cchhheeeeec
Confidence 78889999999999999999988876320001 11122233333333 222 3344443333332 1000011111
Q ss_pred -----------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 011102 340 -----------AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS 382 (493)
Q Consensus 340 -----------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~ 382 (493)
--+-.|.+....+-+...++.+....-.++..-.|.++.-|+.
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1234556667777778888887766666677777777777765
No 347
>PRK09857 putative transposase; Provisional
Probab=48.24 E-value=1.4e+02 Score=28.79 Aligned_cols=67 Identities=12% Similarity=0.125 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCH
Q 011102 408 YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475 (493)
Q Consensus 408 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 475 (493)
+..++.-..+.|+.++..++++.+.+. +.......-++.+-+...|.-+++.++-.+|...|+.++.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~ 275 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLAD 275 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 344555545566666666666666543 2223333445556666666667778888888888877664
No 348
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.32 E-value=1.1e+02 Score=24.62 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 408 YRVVIKLFVALNDISRAIRYFSKLKE 433 (493)
Q Consensus 408 y~~li~~~~~~g~~~~A~~~~~~m~~ 433 (493)
|..|+.-|...|..++|.+++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 78888888888888888888888775
No 349
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=47.24 E-value=59 Score=24.49 Aligned_cols=46 Identities=7% Similarity=0.026 Sum_probs=26.0
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHH
Q 011102 382 SEKKCREALTVVWNMEASNCLFDL--PAYRVVIKLFVALNDISRAIRY 427 (493)
Q Consensus 382 ~~g~~~~A~~l~~~M~~~gi~pd~--~ty~~li~~~~~~g~~~~A~~~ 427 (493)
...+.++|+..|....+.-..|.. .++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666665544322221 3556666777777766666554
No 350
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=47.10 E-value=1.2e+02 Score=25.17 Aligned_cols=59 Identities=10% Similarity=0.085 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 011102 281 LAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIM 342 (493)
Q Consensus 281 ~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li 342 (493)
+..+-++......+.|++.....-+.+|-+. +++..|.++|+.++.+ +.+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRv-NDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRV-NDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHh-ccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 4455556666677778888888888888887 8888888888877664 333333454443
No 351
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=46.25 E-value=58 Score=23.11 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=9.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 011102 410 VVIKLFVALNDISRAIRYFSKL 431 (493)
Q Consensus 410 ~li~~~~~~g~~~~A~~~~~~m 431 (493)
-+|.||...|++++|.++++++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444444444444444
No 352
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.93 E-value=4.5e+02 Score=28.98 Aligned_cols=97 Identities=14% Similarity=-0.067 Sum_probs=59.8
Q ss_pred HhhccCCCCHHHHHHHHhhhccc-------CcHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC
Q 011102 174 IKGLDSHKDVAEVLDKCGRFLRK-------GSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHH 246 (493)
Q Consensus 174 l~~~~~~~~~~~a~~~~~~m~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g 246 (493)
++++.+.+..++|++.-+.-... ..+-..|.+|.-.|+.++|-.+.-.|... +..-|.--+.-+...+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN-----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc-----hHHHHHHHHHHhcccc
Confidence 44555567778887776643322 26778889999999999999888888754 5566776676677666
Q ss_pred CCchhhhH-HHhhccCcHHHHHHHHHHHHh
Q 011102 247 ELKVPFKL-ENFVSLASKGVLEATAKGFVK 275 (493)
Q Consensus 247 ~~~~~~~l-~~~~~~~~~~~~~~li~~~~~ 275 (493)
+....-++ =....-.+..+|..++..|..
T Consensus 438 ~l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 54321111 000111133467777766665
No 353
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=45.28 E-value=1e+02 Score=24.53 Aligned_cols=23 Identities=4% Similarity=-0.078 Sum_probs=12.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 011102 340 AIMKVGIRLQKFGVVESLFHWFT 362 (493)
Q Consensus 340 ~li~~~~~~g~~~~A~~l~~~m~ 362 (493)
.+|..|...|+.++|...+.++.
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHhC
Confidence 44455555566666666666553
No 354
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=44.79 E-value=84 Score=30.81 Aligned_cols=49 Identities=12% Similarity=0.005 Sum_probs=27.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHH
Q 011102 343 KVGIRLQKFGVVESLFHWFTHSGRDP-TVVMYTTLIHSRLSEKKCREALTVV 393 (493)
Q Consensus 343 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~ 393 (493)
+-|.+.|++++|...|..-.. +.| |.++|..-..+|.+..++..|+.=-
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhH
Confidence 456666666666666654332 234 5666666666666666665544433
No 355
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=44.56 E-value=2.4e+02 Score=25.97 Aligned_cols=99 Identities=12% Similarity=0.145 Sum_probs=53.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHH--HHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 011102 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP---TVVMYT--TLIHSRLSEKKCREALTVVWNMEASNCLFD 404 (493)
Q Consensus 330 g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~ty~--~li~~~~~~g~~~~A~~l~~~M~~~gi~pd 404 (493)
.+.++...+|.||--|.-...+.+|-+.|.. +.|+.| |..+++ .-|......|++++|.+..+.....-+.-|
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 3556666666665555444444555555542 344444 333332 456667777888888777777654333333
Q ss_pred HHHHHHHHHH----HHHcCCHHHHHHHHHH
Q 011102 405 LPAYRVVIKL----FVALNDISRAIRYFSK 430 (493)
Q Consensus 405 ~~ty~~li~~----~~~~g~~~~A~~~~~~ 430 (493)
...|-.|..- ..+.|..++|.++.+.
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3222222211 3566667777666654
No 356
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=44.50 E-value=36 Score=24.19 Aligned_cols=47 Identities=11% Similarity=0.158 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 420 DISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 420 ~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
.+++..++++.+.... =|..---.+|.+|...|++++|.++++++.+
T Consensus 5 ~~~~~~~~~~~lR~~R--HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQR--HDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455555555554210 1333345689999999999999999998864
No 357
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=44.45 E-value=3e+02 Score=26.53 Aligned_cols=109 Identities=11% Similarity=0.085 Sum_probs=66.2
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCCCHHHHHHHHH-HHHcCCCHHHHHHHHHHH
Q 011102 322 LDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFT----HSGRDPTVVMYTTLIH-SRLSEKKCREALTVVWNM 396 (493)
Q Consensus 322 ~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p~~~ty~~li~-~~~~~g~~~~A~~l~~~M 396 (493)
+++.+...|-.-....+-.+-.-||+.++.+.+.+..++.. ..|.+.|+.-.-+-+. .|....-+++-++..+.|
T Consensus 102 i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~ 181 (412)
T COG5187 102 IREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDI 181 (412)
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 33333333333445567777888999999888887776643 3577777754443332 233333467888888888
Q ss_pred HHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 397 EASNCLFDL----PAYRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 397 ~~~gi~pd~----~ty~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
.++|...+. .+|-.+-.. ...++.+|-.+|.+..
T Consensus 182 iEkGgDWeRrNRyK~Y~Gi~~m--~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 182 IEKGGDWERRNRYKVYKGIFKM--MRRNFKEAAILLSDIL 219 (412)
T ss_pred HHhCCCHHhhhhHHHHHHHHHH--HHHhhHHHHHHHHHHh
Confidence 888876654 344443332 2346777777776654
No 358
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=44.27 E-value=2.8e+02 Score=26.11 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=40.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 412 IKLFVALNDISRAIRYFSKLKEAGFCPT---YDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 412 i~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
-+-|.+.|.+..|..-+++|.+. .+-+ ....-.|..+|-..|-.++|.+.-+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 35588999999999999999865 3222 23455677888889988888887655543
No 359
>PF13934 ELYS: Nuclear pore complex assembly
Probab=44.25 E-value=2.6e+02 Score=25.78 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=11.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHH
Q 011102 376 LIHSRLSEKKCREALTVVWNM 396 (493)
Q Consensus 376 li~~~~~~g~~~~A~~l~~~M 396 (493)
+|.++...|+.+.|+.++..+
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 445555555555555555543
No 360
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=43.59 E-value=47 Score=19.23 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=16.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 011102 446 MIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 446 li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
+-.++.+.|++++|.+.|+++.+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 44556677788888888777764
No 361
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=43.50 E-value=3.3e+02 Score=26.72 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=19.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 011102 375 TLIHSRLSEKKCREALTVVWNMEASNCLF 403 (493)
Q Consensus 375 ~li~~~~~~g~~~~A~~l~~~M~~~gi~p 403 (493)
.++++... |+..+|.++++++.+.|..|
T Consensus 249 ~l~~ai~~-~~~~~a~~~~~~l~~~~~~~ 276 (355)
T TIGR02397 249 ELLEAILN-KDTAEALKILDEILESGVDP 276 (355)
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHcCCCH
Confidence 35555543 77888888888887777654
No 362
>COG5210 GTPase-activating protein [General function prediction only]
Probab=42.97 E-value=2.4e+02 Score=29.53 Aligned_cols=123 Identities=9% Similarity=-0.017 Sum_probs=75.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 011102 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA----LNDISRAIRYFS 429 (493)
Q Consensus 354 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~----~g~~~~A~~~~~ 429 (493)
.-+++..|.+.|+.....++..++..+.+.-.++.|.++++-+.-.|+.-....+.+++..... ...-..-..++.
T Consensus 361 ~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 440 (496)
T COG5210 361 DPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKLLRDKLLKLDSDELLDLLLK 440 (496)
T ss_pred HHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhccCchhHHHHHHH
Confidence 3477888888899999999999999999999999999999988887776555555544443221 111111222222
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 011102 430 KLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483 (493)
Q Consensus 430 ~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~ 483 (493)
..... +....+ .-..-.+.+...+.....+.+.+.++.|+. |...+.
T Consensus 441 ~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~i~p~~--~~~~~~ 487 (496)
T COG5210 441 QLFLH---SGKEAW--SSILKFRHGTDRDILLFIEDLLKKDITPTR--YRSELR 487 (496)
T ss_pred hhhhh---hhhhhh--hhhHHhhhhhhhhHHHHHHhhhhcccCchh--hhHHHH
Confidence 22110 111111 222234455566677777777788899987 444443
No 363
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.66 E-value=3.7e+02 Score=28.06 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 011102 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405 (493)
Q Consensus 369 ~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~ 405 (493)
+...+..++.+....+....|+.++++|.+.|..|..
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 4455556666666555566777788887777776543
No 364
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=42.62 E-value=4.7e+02 Score=28.23 Aligned_cols=153 Identities=10% Similarity=0.059 Sum_probs=81.8
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCCHHH
Q 011102 338 CTAIMKVGI-RLQKFGVVESLFHWFTHSGRDPTVV-----MYTTLIHSRLSEKKCREALTVVWNMEAS----NCLFDLPA 407 (493)
Q Consensus 338 ~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~-----ty~~li~~~~~~g~~~~A~~l~~~M~~~----gi~pd~~t 407 (493)
+--+...|. ...++++|+..+.+-...--.++.. +-..++..|.+.+... |...+++..+. +..+-...
T Consensus 62 ~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~ 140 (608)
T PF10345_consen 62 RLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYA 140 (608)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHH
Confidence 334444444 5566777777777553322222221 2234556666666555 77777665432 22233333
Q ss_pred HHHH-HHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHCCC---------c
Q 011102 408 YRVV-IKLFVALNDISRAIRYFSKLKEA---GFCPTYDIYRDMIRIFM--ASGRLAKCRDVCKEAEMAGF---------K 472 (493)
Q Consensus 408 y~~l-i~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~ty~~li~~~~--~~g~~~~A~~l~~~m~~~g~---------~ 472 (493)
|.-+ +..+...++...|.+.++.+... ...|-...+-.++.+.. +.+..+++.+.++++..... .
T Consensus 141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~ 220 (608)
T PF10345_consen 141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHI 220 (608)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCc
Confidence 4443 33333347888888888777621 23344555555666654 34556677777776643222 3
Q ss_pred cCHHHHHHHHHhhhhccCC
Q 011102 473 LDKQTVVELLQIEKESRIG 491 (493)
Q Consensus 473 pd~~t~~~Ll~~~~~~r~g 491 (493)
|-..+|..++++|-.-+.|
T Consensus 221 ~qL~~~~lll~l~~~l~~~ 239 (608)
T PF10345_consen 221 PQLKALFLLLDLCCSLQQG 239 (608)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 4566777777766555444
No 365
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=41.90 E-value=2.8e+02 Score=31.69 Aligned_cols=129 Identities=11% Similarity=0.078 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHH--
Q 011102 267 EATAKGFVKGGNLKLAWKLLMVAK-DGG--RMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI-- 341 (493)
Q Consensus 267 ~~li~~~~~~g~~~~A~~l~~~m~-~~g--~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~l-- 341 (493)
=+.|.-+...+++.+|..+.+.=+ +.+ ..-++..|-.=+..+.+.-++.+..-.++.++.+. ++.- ..|...
T Consensus 698 L~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~E-Dvt~--tmY~~~~~ 774 (928)
T PF04762_consen 698 LAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNE-DVTK--TMYKDTYP 774 (928)
T ss_pred HHHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccc-cccc--cccccccc
Confidence 345556667778877765543211 111 11344555555555555545555555555555543 2211 111111
Q ss_pred ----------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHC
Q 011102 342 ----------MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK--KCREALTVVWNMEAS 399 (493)
Q Consensus 342 ----------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g--~~~~A~~l~~~M~~~ 399 (493)
.......+++....+.+.+-.+. ..-...-...+|.+|++.+ ++++|+.++.++++.
T Consensus 775 ~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 775 PSSEAQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred cccccccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 11222333444444444332221 1222334568888898888 899999999988875
No 366
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=41.67 E-value=1.7e+02 Score=28.71 Aligned_cols=75 Identities=16% Similarity=0.167 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 011102 373 YTTLIHSRLSEKKCREALTVVWNMEAS---NCLFDLPAYR--VVIKLFVALNDISRAIRYFSKLKE-----AGFCPTYDI 442 (493)
Q Consensus 373 y~~li~~~~~~g~~~~A~~l~~~M~~~---gi~pd~~ty~--~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t 442 (493)
.-.++...-+.++.++|++.++++.+. --.||.+.|. .....+...|+++++.+++++.++ .|+.|++.+
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 344555556666888888888888653 2346666554 344556677888888888887776 666665543
Q ss_pred -HHHHH
Q 011102 443 -YRDMI 447 (493)
Q Consensus 443 -y~~li 447 (493)
|..+-
T Consensus 158 ~fY~ls 163 (380)
T KOG2908|consen 158 SFYSLS 163 (380)
T ss_pred hHHHHH
Confidence 44333
No 367
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=41.13 E-value=1.2e+02 Score=24.16 Aligned_cols=63 Identities=10% Similarity=0.097 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCC
Q 011102 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL--NDISRAIRYFSKLKEAGFC 437 (493)
Q Consensus 373 y~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~--g~~~~A~~~~~~m~~~g~~ 437 (493)
-..+|..|...|+.++|..-+.++..... -......+|..+... ..-+.+..++..+.+.+..
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el~~~~~--~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKELKLPSQ--HHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTT-GGG--HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCcc--HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 35667788888999999999988643211 122233444444433 2334455666666666554
No 368
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=40.58 E-value=4.6e+02 Score=28.84 Aligned_cols=83 Identities=10% Similarity=-0.005 Sum_probs=50.0
Q ss_pred HHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC---CC----------CCHHHHHHHHHHHHH
Q 011102 352 GVVESLFHWF-THSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN---CL----------FDLPAYRVVIKLFVA 417 (493)
Q Consensus 352 ~~A~~l~~~m-~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g---i~----------pd~~ty~~li~~~~~ 417 (493)
++....+... ...|+..+......|+... .|++..|+.+++++...| |. .+......|++++.+
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~ 258 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN 258 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc
Confidence 4444555443 4568888877777777654 589999999998865532 11 122223334444443
Q ss_pred cCCHHHHHHHHHHHHHCCCC
Q 011102 418 LNDISRAIRYFSKLKEAGFC 437 (493)
Q Consensus 418 ~g~~~~A~~~~~~m~~~g~~ 437 (493)
++...++.++++|...|+.
T Consensus 259 -~d~~~al~~l~~L~~~G~d 277 (709)
T PRK08691 259 -QDGAALLAKAQEMAACAVG 277 (709)
T ss_pred -CCHHHHHHHHHHHHHhCCC
Confidence 6666666666666666654
No 369
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=40.49 E-value=3.2e+02 Score=29.95 Aligned_cols=98 Identities=16% Similarity=0.090 Sum_probs=51.7
Q ss_pred HHHHHHHH-HHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011102 280 KLAWKLLM-VAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLF 358 (493)
Q Consensus 280 ~~A~~l~~-~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 358 (493)
++..+.+. .+.+.|+..+......++... . |++..++.+++.+... |- |.+. .+..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~-GslRdAlnLLDqaia~-g~-----------------g~It--~e~V 237 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--A-GSMRDALSLLDQAIAL-GS-----------------GKVA--ENDV 237 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--C-CCHHHHHHHHHHHHHh-cC-----------------CCcC--HHHH
Confidence 34444443 334457777776666665544 3 6777777777665432 10 1111 0111
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 011102 359 HWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404 (493)
Q Consensus 359 ~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd 404 (493)
..|. | ..+......|++++.. ++..++++++++|...|+.+.
T Consensus 238 ~~lL--G-~~d~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 238 RQMI--G-AVDKQYLYELLTGIIN-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHHH--c-ccCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 1111 1 1233344555555555 777888888888887777554
No 370
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=40.21 E-value=3e+02 Score=25.38 Aligned_cols=98 Identities=10% Similarity=0.059 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCC---CHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011102 294 RMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNL---SQQDCT--AIMKVGIRLQKFGVVESLFHWFTHSGRDP 368 (493)
Q Consensus 294 ~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p---~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p 368 (493)
+.++..-+|.||--|.-. ..+.+|-+.|..-. |+.+ |..+++ .-|....+.|++++|.+..+.+...-+.-
T Consensus 22 ~~~~~~d~n~LVmnylv~-eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~ 97 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVH-EGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDT 97 (228)
T ss_pred cCcchhhHHHHHHHHHHh-ccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHcc
Confidence 456667778887777766 55666665554432 4444 444443 55778899999999999999886444444
Q ss_pred CHHHHHHHH----HHHHcCCCHHHHHHHHHH
Q 011102 369 TVVMYTTLI----HSRLSEKKCREALTVVWN 395 (493)
Q Consensus 369 ~~~ty~~li----~~~~~~g~~~~A~~l~~~ 395 (493)
|...+--|. -=+.|.|..++|++.++.
T Consensus 98 n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 98 NRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 532222222 124566777777777664
No 371
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=39.60 E-value=2e+02 Score=25.66 Aligned_cols=14 Identities=0% Similarity=-0.028 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHc
Q 011102 351 FGVVESLFHWFTHS 364 (493)
Q Consensus 351 ~~~A~~l~~~m~~~ 364 (493)
++.|+.+|+.+.+.
T Consensus 85 LESAl~v~~~I~~E 98 (200)
T cd00280 85 LESALMVLESIEKE 98 (200)
T ss_pred HHHHHHHHHHHHHh
Confidence 45566666665543
No 372
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=39.46 E-value=1.6e+02 Score=28.47 Aligned_cols=43 Identities=7% Similarity=0.059 Sum_probs=23.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011102 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398 (493)
Q Consensus 356 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~ 398 (493)
++|+.|++.++.|.-+++-.+---+.+.=.+.+.+.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4555555555555555555555555555555555555555543
No 373
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=39.33 E-value=4.2e+02 Score=26.77 Aligned_cols=286 Identities=11% Similarity=0.013 Sum_probs=172.7
Q ss_pred HHHHHHhhhcccCcHHHHHHHHHh--CCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhccC-
Q 011102 185 EVLDKCGRFLRKGSLSFTVRELGH--MNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLA- 261 (493)
Q Consensus 185 ~a~~~~~~m~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~~- 261 (493)
.+.+.|....+...|.+|=.++.. .|+-..|.++-.+..+ -+.-|...+..++.+-...-.-+...+-..|+.|.
T Consensus 71 t~~Ryfr~rKRdrgyqALStGliAagAGda~lARkmt~~~~~--llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~ 148 (531)
T COG3898 71 TARRYFRERKRDRGYQALSTGLIAAGAGDASLARKMTARASK--LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD 148 (531)
T ss_pred HHHHHHHHHHhhhHHHHHhhhhhhhccCchHHHHHHHHHHHh--hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 344555555555678888777755 4677788877766553 35567777777777765543223455556677664
Q ss_pred cHHH----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHH
Q 011102 262 SKGV----LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLD-PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQ 336 (493)
Q Consensus 262 ~~~~----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~ 336 (493)
+..+ .-.|.-.--+.|..+.|.+.-+..-..- |. .-.+.+.+...|.. |+|+.|+++.+.-+...-+.+++.
T Consensus 149 dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~-gdWd~AlkLvd~~~~~~vie~~~a 225 (531)
T COG3898 149 DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAA-GDWDGALKLVDAQRAAKVIEKDVA 225 (531)
T ss_pred ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhc-CChHHHHHHHHHHHHHHhhchhhH
Confidence 2222 2222223346788888888777665532 33 34677899999999 999999999998766545666655
Q ss_pred HH--HHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011102 337 DC--TAIMKVGIR---LQKFGVVESLFHWFTHSGRDPTVVMYT-TLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV 410 (493)
Q Consensus 337 ~~--~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~ty~-~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~ 410 (493)
-- ..|+.+-.. ..+...|...-.+ ...+.||.+--. .--.+|.+.|+..++-.+++.+.+..-.|++.
T Consensus 226 eR~rAvLLtAkA~s~ldadp~~Ar~~A~~--a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia---- 299 (531)
T COG3898 226 ERSRAVLLTAKAMSLLDADPASARDDALE--ANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA---- 299 (531)
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHH--HhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----
Confidence 32 233332211 1223344433332 334466654332 33478899999999999999999887667652
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH-HCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHhh
Q 011102 411 VIKLFVALNDISRAIRYFSKLK-EAGFCP-TYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQIE 485 (493)
Q Consensus 411 li~~~~~~g~~~~A~~~~~~m~-~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~~~ 485 (493)
.+.-+.+.|+.. ..-++..+ -..++| |..+--++..+-...|++..|..--+.... ..|....|-.|-+++
T Consensus 300 ~lY~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIe 372 (531)
T COG3898 300 LLYVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIE 372 (531)
T ss_pred HHHHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHH
Confidence 233445666532 22222222 111223 455666777888888988877654444332 577777777776653
No 374
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.60 E-value=4.8e+02 Score=27.47 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=22.1
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 011102 288 VAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327 (493)
Q Consensus 288 ~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~ 327 (493)
.+.+.|+..+......++... . |+...|..+++....
T Consensus 190 il~~egi~~~~~al~~ia~~s--~-GslR~al~lLdq~ia 226 (509)
T PRK14958 190 LLKEENVEFENAALDLLARAA--N-GSVRDALSLLDQSIA 226 (509)
T ss_pred HHHHcCCCCCHHHHHHHHHHc--C-CcHHHHHHHHHHHHh
Confidence 344567766666655554442 3 677777777766543
No 375
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.51 E-value=5e+02 Score=27.37 Aligned_cols=78 Identities=13% Similarity=0.113 Sum_probs=46.0
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC---CC----------CCHHHHHHHHHHHHHcCCHHHHHH
Q 011102 360 WFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN---CL----------FDLPAYRVVIKLFVALNDISRAIR 426 (493)
Q Consensus 360 ~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g---i~----------pd~~ty~~li~~~~~~g~~~~A~~ 426 (493)
.+.+.|+..+......++.. ..|++..|+.++++....| +. ++....-.+++++. .|+.+.+..
T Consensus 190 il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l~ 266 (509)
T PRK14958 190 LLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLLG 266 (509)
T ss_pred HHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHH
Confidence 34567887777766666554 3588999999998765443 11 11222233333333 366666677
Q ss_pred HHHHHHHCCCCCCH
Q 011102 427 YFSKLKEAGFCPTY 440 (493)
Q Consensus 427 ~~~~m~~~g~~p~~ 440 (493)
++++|.+.|..|..
T Consensus 267 ~~~~l~~~g~~~~~ 280 (509)
T PRK14958 267 CVTRLVEQGVDFSN 280 (509)
T ss_pred HHHHHHHcCCCHHH
Confidence 77777666665543
No 376
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=38.16 E-value=66 Score=23.19 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 011102 403 FDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454 (493)
Q Consensus 403 pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 454 (493)
|+...++-+++.+++-.-++++...+.+....|. .+..+|---+..+++..
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666665 35556655555555543
No 377
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=37.90 E-value=1.8e+02 Score=23.40 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011102 351 FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430 (493)
Q Consensus 351 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~ 430 (493)
.++|..+.+.+...+. -..+.--+-+..+.+.|++++|+..= .....||...|-+|- -.+.|.-+++...+.+
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~----~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLP----QCHCYPDLEPWAALC--AWKLGLASALESRLTR 94 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHH----TTS--GGGHHHHHHH--HHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhc----ccCCCccHHHHHHHH--HHhhccHHHHHHHHHH
Confidence 4455555555544332 11111222233445555555551111 122345555554442 2355555555555555
Q ss_pred HHHC
Q 011102 431 LKEA 434 (493)
Q Consensus 431 m~~~ 434 (493)
+..+
T Consensus 95 la~~ 98 (116)
T PF09477_consen 95 LASS 98 (116)
T ss_dssp HCT-
T ss_pred HHhC
Confidence 5433
No 378
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=37.79 E-value=3.5e+02 Score=26.62 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=15.8
Q ss_pred HcCCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 011102 452 ASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483 (493)
Q Consensus 452 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~ 483 (493)
+.|++..-.++... .|-.|+...+..++.
T Consensus 245 n~Gdl~~f~~l~~~---~~~~p~L~~~e~~L~ 273 (380)
T KOG2908|consen 245 NSGDLKRFESLKGV---WGKQPDLASNEDFLL 273 (380)
T ss_pred ccCCHHHHHHHHHH---hccCchHHHHHHHHH
Confidence 55666554443332 234777777666554
No 379
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=37.64 E-value=3.5e+02 Score=25.43 Aligned_cols=70 Identities=9% Similarity=-0.114 Sum_probs=49.7
Q ss_pred ccCCCCHHHHHHHHhhhcccC--------cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCC
Q 011102 177 LDSHKDVAEVLDKCGRFLRKG--------SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHE 247 (493)
Q Consensus 177 ~~~~~~~~~a~~~~~~m~~~~--------~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~ 247 (493)
.-..|++.+|.+.|+.+..+. +--.++-++-+.++.++|+..+++..+..+-.||. -|...|.+++..-.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~ 121 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQ 121 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhcc
Confidence 345688888988888877664 22345667788888999999988888775666653 57777777774433
No 380
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=37.33 E-value=4.4e+02 Score=26.37 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011102 313 DKYMLVMTLLDELGQR----DDLNLSQQDCTAIMKVGIRLQKFGVVESLFH 359 (493)
Q Consensus 313 ~~~~~a~~l~~~m~~~----~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 359 (493)
+.++++++-|+...+- ++-.....+|-.|-.-|.+..++++|.-+..
T Consensus 136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~ 186 (518)
T KOG1941|consen 136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPC 186 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhH
Confidence 4555555555543221 1111223355555555555555555554443
No 381
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=37.18 E-value=3.9e+02 Score=28.12 Aligned_cols=61 Identities=7% Similarity=0.027 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011102 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGR-DPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398 (493)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~ 398 (493)
...++.-|.+.+++++|..++..|.=.-. .---.+.+.+.+.+.+..--.+.+..++.+..
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 34567778888888888888887741110 01123344555666666545555555555543
No 382
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.50 E-value=5.2e+02 Score=27.00 Aligned_cols=102 Identities=10% Similarity=0.041 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 011102 316 MLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN 395 (493)
Q Consensus 316 ~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 395 (493)
++..+.++......|+..+......+.. .-.|++..|+.++++....+ ...+++..+. +++
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~-------------~~l-- 243 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFT--DSKLTGVKIR-------------KMI-- 243 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhC--CCCcCHHHHH-------------HHh--
Confidence 3444444444333366666555544443 23477777777776654221 1112222221 111
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 011102 396 MEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYD 441 (493)
Q Consensus 396 M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 441 (493)
|. .+...+..++.+....+....|..++++|.+.|..|...
T Consensus 244 ----g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 244 ----GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred ----CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 33 355566666666666666677888888888887765444
No 383
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=35.65 E-value=2e+02 Score=30.74 Aligned_cols=32 Identities=13% Similarity=0.017 Sum_probs=0.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011102 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448 (493)
Q Consensus 417 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~ 448 (493)
+.|++.+|.+.+-.+.+.++.|...-...|.+
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp --------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 34666777776666666666666655554444
No 384
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=35.63 E-value=5.9e+02 Score=27.42 Aligned_cols=185 Identities=10% Similarity=0.016 Sum_probs=100.2
Q ss_pred HHHHHHHHHHh-CCCCCCHH--HHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHH-----HHHHHHHHHHHcCCHH
Q 011102 281 LAWKLLMVAKD-GGRMLDPS--IYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQ-----DCTAIMKVGIRLQKFG 352 (493)
Q Consensus 281 ~A~~l~~~m~~-~g~~pd~~--t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~-----~~~~li~~~~~~g~~~ 352 (493)
.|++.++-..+ ..+.|... ++--+...+......+++|...+.+.... --+++.. ....++..|.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l-~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILL-CERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 45555555553 22333222 23334444444336777887777765332 1112211 1234456666666555
Q ss_pred HHHHHHHHHHHc----CCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHH--HcCCHH
Q 011102 353 VVESLFHWFTHS----GRDPTVVMYTTL-IHSRLSEKKCREALTVVWNMEAS---NCLFDLPAYRVVIKLFV--ALNDIS 422 (493)
Q Consensus 353 ~A~~l~~~m~~~----g~~p~~~ty~~l-i~~~~~~g~~~~A~~l~~~M~~~---gi~pd~~ty~~li~~~~--~~g~~~ 422 (493)
|....++..+. +..+-...|.-+ +.-+...++...|.+.++.+... ...|-...+-.++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 77777765432 222333444444 33333347888888888877643 23344555556666644 345556
Q ss_pred HHHHHHHHHHHCC---------CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 011102 423 RAIRYFSKLKEAG---------FCPTYDIYRDMIRIFM--ASGRLAKCRDVCKEAE 467 (493)
Q Consensus 423 ~A~~~~~~m~~~g---------~~p~~~ty~~li~~~~--~~g~~~~A~~l~~~m~ 467 (493)
++.+..+++.... -.|-..+|..+++.++ ..|+++.+...++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6777776664211 1345677888888766 5677777777666664
No 385
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=35.53 E-value=1.5e+02 Score=30.24 Aligned_cols=107 Identities=8% Similarity=0.064 Sum_probs=58.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 011102 374 TTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453 (493)
Q Consensus 374 ~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 453 (493)
..|+.-|...|+..+|.+.++++-- -+---.+.+-+++.+.-+.|+-...+.++++.-..|+. |-+-|-.+|.|.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgm-PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI----T~nQMtkGf~RV 587 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGM-PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI----TTNQMTKGFERV 587 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCC-CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce----eHHHhhhhhhhh
Confidence 3566667777777777776665421 11123456677777777777766666666666655543 566666666654
Q ss_pred CC--------HHHHHHHHHHHHHCCCccCHHHHHHHHHhhh
Q 011102 454 GR--------LAKCRDVCKEAEMAGFKLDKQTVVELLQIEK 486 (493)
Q Consensus 454 g~--------~~~A~~l~~~m~~~g~~pd~~t~~~Ll~~~~ 486 (493)
.+ +-.|.+.|+...+.+.+ +.+.|.-|-.+|.
T Consensus 588 ~dsl~DlsLDvPna~ekf~~~Ve~~~~-~G~i~~~l~~~~~ 627 (645)
T KOG0403|consen 588 YDSLPDLSLDVPNAYEKFERYVEECFQ-NGIISKQLRDLCP 627 (645)
T ss_pred hccCcccccCCCcHHHHHHHHHHHHHH-cCchhHHhhhcch
Confidence 32 33455555555443332 1233444444443
No 386
>PLN03025 replication factor C subunit; Provisional
Probab=35.41 E-value=4.3e+02 Score=25.69 Aligned_cols=31 Identities=10% Similarity=-0.008 Sum_probs=17.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 011102 374 TTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405 (493)
Q Consensus 374 ~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~ 405 (493)
..++++.. .++.++|...+.+|...|..|..
T Consensus 229 ~~~i~~~~-~~~~~~a~~~l~~ll~~g~~~~~ 259 (319)
T PLN03025 229 KNIVRNCL-KGKFDDACDGLKQLYDLGYSPTD 259 (319)
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHH
Confidence 33343333 35666666666666666666543
No 387
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.60 E-value=2.6e+02 Score=24.93 Aligned_cols=47 Identities=9% Similarity=0.052 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhcCCCCCC-HH------HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 315 YMLVMTLLDELGQRDDLNLS-QQ------DCTAIMKVGIRLQKFGVVESLFHWFT 362 (493)
Q Consensus 315 ~~~a~~l~~~m~~~~g~~p~-~~------~~~~li~~~~~~g~~~~A~~l~~~m~ 362 (493)
.+.|+.+|+.+.+... .|. .. .--..+-.|.+.|.+++|.+++++..
T Consensus 85 LESAl~v~~~I~~E~~-~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 85 LESALMVLESIEKEFS-LPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHh
Confidence 5778888887776521 111 00 11123344555555555555555554
No 388
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=34.43 E-value=3.5e+02 Score=24.38 Aligned_cols=107 Identities=15% Similarity=0.026 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH-HHHHcCC--HHHHHH
Q 011102 352 GVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS--NCLFDLPAYRVVIK-LFVALND--ISRAIR 426 (493)
Q Consensus 352 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~--gi~pd~~ty~~li~-~~~~~g~--~~~A~~ 426 (493)
++++++-.++. -+....-.....|++++|.+-++++.+. .++--...|..+.. ++|..+. +-+|.-
T Consensus 20 EE~l~lsRei~---------r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 20 EEALKLSREIV---------RLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHH
Confidence 45666655554 3455555566778899888888877543 22222345666665 5666653 556666
Q ss_pred HHHHHHHCCCCCCHH----HHHHHHHHH--------------HHcCCHHHHHHHHHHHHH
Q 011102 427 YFSKLKEAGFCPTYD----IYRDMIRIF--------------MASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 427 ~~~~m~~~g~~p~~~----ty~~li~~~--------------~~~g~~~~A~~l~~~m~~ 468 (493)
++.-+.+.++ |... .+-..|.|. .+.|+++.|.+.++-|.+
T Consensus 91 l~~~l~~~~~-ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 91 LYSILKDGRL-PSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHhcCCC-CCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666654433 3322 112222222 467899999999998875
No 389
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.40 E-value=4.7e+02 Score=28.35 Aligned_cols=95 Identities=12% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-------------CCHHHHHHH
Q 011102 380 RLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC-------------PTYDIYRDM 446 (493)
Q Consensus 380 ~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------------p~~~ty~~l 446 (493)
+-....-+-...+-+.+.+.|+..+......++. ...|++..|..+++.....|-. ++......+
T Consensus 180 f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~L 257 (618)
T PRK14951 180 LRPMAPETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRL 257 (618)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHH
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCccCHHH
Q 011102 447 IRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477 (493)
Q Consensus 447 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 477 (493)
++++.. |+...+++++++|.+.|..|....
T Consensus 258 ldaL~~-~d~~~al~~l~~l~~~G~~~~~il 287 (618)
T PRK14951 258 IDALAQ-GDGRTVVETADELRLNGLSAASTL 287 (618)
T ss_pred HHHHHc-CCHHHHHHHHHHHHHcCCCHHHHH
No 390
>PHA03100 ankyrin repeat protein; Provisional
Probab=34.36 E-value=1.5e+02 Score=30.58 Aligned_cols=12 Identities=17% Similarity=-0.072 Sum_probs=5.1
Q ss_pred HHHHHHCCCccC
Q 011102 463 CKEAEMAGFKLD 474 (493)
Q Consensus 463 ~~~m~~~g~~pd 474 (493)
++.+.+.|..|+
T Consensus 266 v~~Ll~~gad~n 277 (480)
T PHA03100 266 VKYLLDLGANPN 277 (480)
T ss_pred HHHHHHcCCCCC
Confidence 333444444443
No 391
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=34.18 E-value=2.5e+02 Score=22.65 Aligned_cols=78 Identities=10% Similarity=-0.017 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 011102 314 KYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVV 393 (493)
Q Consensus 314 ~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 393 (493)
.+++|..+.+.+...++ -...+--+-+..+.+.|++++|+..= .....||...|-+|-. .+.|..+++..-+
T Consensus 21 cH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~ALl~~----~~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEALLLP----QCHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHHHHHH----TTS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHHHhc----ccCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 45555555555554411 12222223334455555555552111 1122455555544432 3455555555555
Q ss_pred HHHHHC
Q 011102 394 WNMEAS 399 (493)
Q Consensus 394 ~~M~~~ 399 (493)
.++...
T Consensus 93 ~rla~~ 98 (116)
T PF09477_consen 93 TRLASS 98 (116)
T ss_dssp HHHCT-
T ss_pred HHHHhC
Confidence 554443
No 392
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=33.41 E-value=1.5e+02 Score=21.11 Aligned_cols=15 Identities=20% Similarity=-0.004 Sum_probs=6.5
Q ss_pred CCCHHHHHHHHHHHH
Q 011102 383 EKKCREALTVVWNME 397 (493)
Q Consensus 383 ~g~~~~A~~l~~~M~ 397 (493)
.|++-+|-++++++-
T Consensus 12 ~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 12 AGDFFEAHEVLEELW 26 (62)
T ss_dssp TT-HHHHHHHHHHHC
T ss_pred CCCHHHhHHHHHHHH
Confidence 344444444444443
No 393
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=33.35 E-value=2.3e+02 Score=21.88 Aligned_cols=67 Identities=6% Similarity=-0.033 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011102 282 AWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356 (493)
Q Consensus 282 A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 356 (493)
+.++++.+.+.|+ .+..-...+-.+-... |+.+.|.+++..+. + | | ..|..+++++...|.-+-|.+
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~-g~~~~ar~LL~~L~-r-g--~--~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENH-GNESGARELLKRIV-Q-K--E--GWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhcccc-CcHHHHHHHHHHhc-c-C--C--cHHHHHHHHHHHcCchhhhhc
Confidence 4456666666663 2333333333332334 77788888888776 4 1 2 356777777777777655543
No 394
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=33.13 E-value=2.2e+02 Score=24.13 Aligned_cols=44 Identities=9% Similarity=-0.028 Sum_probs=18.7
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 011102 359 HWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF 403 (493)
Q Consensus 359 ~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~p 403 (493)
+.+++.|++++.. =-.+++.+...++.-.|.++++++.+.+...
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~i 53 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGI 53 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCC
Confidence 3334444443322 1233444444444455555555555444333
No 395
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=33.08 E-value=6.7e+02 Score=28.05 Aligned_cols=84 Identities=11% Similarity=0.046 Sum_probs=48.5
Q ss_pred HHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC---CC----------CCHHHHHHHHHHHH
Q 011102 351 FGVVESLFHWF-THSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN---CL----------FDLPAYRVVIKLFV 416 (493)
Q Consensus 351 ~~~A~~l~~~m-~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g---i~----------pd~~ty~~li~~~~ 416 (493)
.++..+.+..+ ...|+.-+......+.+ ...|++.+|+.++++....+ +. +|...+..+++++.
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~ 257 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALA 257 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34556666665 34677767666555544 44789999999988755432 11 22222333344333
Q ss_pred HcCCHHHHHHHHHHHHHCCCC
Q 011102 417 ALNDISRAIRYFSKLKEAGFC 437 (493)
Q Consensus 417 ~~g~~~~A~~~~~~m~~~g~~ 437 (493)
.|+..+++.++++|...|+.
T Consensus 258 -~~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 258 -AGDGPEILAVADEMALRSLS 277 (830)
T ss_pred -cCCHHHHHHHHHHHHHhCCC
Confidence 36666666666666666654
No 396
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=32.91 E-value=2.2e+02 Score=27.58 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=51.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----------cCCHHHH
Q 011102 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA----------SGRLAKC 459 (493)
Q Consensus 390 ~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----------~g~~~~A 459 (493)
.++++.|++.++.|.-.+|.-+.-.+.+.=.+.+...+|+.+.. |..-|..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 46777777888888888888777777777788888888888774 33336666666654 4777777
Q ss_pred HHHHHH
Q 011102 460 RDVCKE 465 (493)
Q Consensus 460 ~~l~~~ 465 (493)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 777665
No 397
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=32.88 E-value=5.2e+02 Score=29.11 Aligned_cols=29 Identities=3% Similarity=-0.155 Sum_probs=21.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 011102 374 TTLIHSRLSEKKCREALTVVWNMEASNCLF 403 (493)
Q Consensus 374 ~~li~~~~~~g~~~~A~~l~~~M~~~gi~p 403 (493)
..+++++. .++...++.+++++.+.|..|
T Consensus 252 ~~lidAL~-~~D~a~al~~l~~Li~~G~dp 280 (824)
T PRK07764 252 DEAVDALA-AGDGAALFGTVDRVIEAGHDP 280 (824)
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHcCCCH
Confidence 34555555 477888999999988887753
No 398
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=32.67 E-value=85 Score=16.88 Aligned_cols=27 Identities=7% Similarity=0.118 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 442 IYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 442 ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
.|..+-..+...|++++|...++...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 456667777788888888888877654
No 399
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=32.65 E-value=4.6e+02 Score=25.29 Aligned_cols=133 Identities=6% Similarity=0.094 Sum_probs=79.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH----HCCCCCCH
Q 011102 331 LNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTH-SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME----ASNCLFDL 405 (493)
Q Consensus 331 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~----~~gi~pd~ 405 (493)
++.|..-+|+|+.- +..++++--+-.++..+ .|-.--...|-.+-.-||+.++.+.+.+...+.. ..|.+.|+
T Consensus 77 ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv 154 (412)
T COG5187 77 IKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDV 154 (412)
T ss_pred eehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhh
Confidence 44566666666542 12223333233333332 2344456778888899999999999998877643 34777776
Q ss_pred HHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 406 PAYRVVIK-LFVALNDISRAIRYFSKLKEAGFCPTY----DIYRDMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 406 ~ty~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
...-+=+. .|....-+++-++..+.|.++|...+. .+|--+.. ....++.+|-.++-+..
T Consensus 155 ~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~--m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 155 FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFK--MMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHH--HHHHhhHHHHHHHHHHh
Confidence 44332222 244445567888888899988876544 23433322 23346777877776654
No 400
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.49 E-value=6.8e+02 Score=27.13 Aligned_cols=36 Identities=14% Similarity=0.031 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 011102 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404 (493)
Q Consensus 368 p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd 404 (493)
.+...+-.|+++... ++..+|+.+++++...|..|.
T Consensus 246 ~~~~~iF~L~dai~~-~~~~~al~ll~~Ll~~g~~~~ 281 (614)
T PRK14971 246 LDYDYYFRLTDALLA-GKVSDSLLLFDEILNKGFDGS 281 (614)
T ss_pred CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 344444455555544 688888889888888887664
No 401
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=32.22 E-value=2.4e+02 Score=30.47 Aligned_cols=127 Identities=11% Similarity=0.113 Sum_probs=84.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHcCCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 011102 340 AIMKVGIRLQKFGVVESLFHWFTH--SGRDPTVVMYTTLIHSRLSEKKCR------EALTVVWNMEASNCLFDLPAYRVV 411 (493)
Q Consensus 340 ~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~ty~~li~~~~~~g~~~------~A~~l~~~M~~~gi~pd~~ty~~l 411 (493)
+|+.+|...|++-.+.++++.+.. +|-+.=.-.||.-|+...+.|.++ .|.++++.. .+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 899999999999999999999874 455556778999999999999754 344444443 466789999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH--HCCCccCHH
Q 011102 412 IKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS--GRLAKCRDVCKEAE--MAGFKLDKQ 476 (493)
Q Consensus 412 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~--g~~~~A~~l~~~m~--~~g~~pd~~ 476 (493)
+.+-..--.-....-++.++... +-|-+++.+... =..++..-+++++. -.++.|+..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~~-------s~ngv~di~~~~~v~s~~ev~limd~l~i~~~n~~ps~l 171 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIHR-------SANGVIDILMHESVFSPEEVKLIMDQLNIPINNFTPSQL 171 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHHh-------hhhhHHHHHhhhccCCHHHHHHHHHhcCCCCCCCCcchh
Confidence 88876644444555556555532 223344444332 24555555555542 234455543
No 402
>PRK09687 putative lyase; Provisional
Probab=31.98 E-value=4.6e+02 Score=25.05 Aligned_cols=58 Identities=14% Similarity=0.048 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 368 p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
+|...-...+.++.+.|+. .|...+-+..+.+. .....+.+++..|.- +|...+..+.
T Consensus 204 ~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 3444444455555555442 33333333332211 122444555555553 4555555444
No 403
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=31.73 E-value=2.2e+02 Score=27.85 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=21.0
Q ss_pred cCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011102 382 SEKKCREALTVVWNMEAS-NCLFDLPAYRVVIKLFVALNDISRAIRYFSK 430 (493)
Q Consensus 382 ~~g~~~~A~~l~~~M~~~-gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~ 430 (493)
+.|+..+|.+.|+++.+. .+.--......||.+|....-+.+...++-+
T Consensus 287 klGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446666666666553332 1111111223455555554444444444433
No 404
>PHA02989 ankyrin repeat protein; Provisional
Probab=31.52 E-value=2.4e+02 Score=29.42 Aligned_cols=16 Identities=13% Similarity=0.273 Sum_probs=8.8
Q ss_pred HHHHHHHHHcCCCCCH
Q 011102 355 ESLFHWFTHSGRDPTV 370 (493)
Q Consensus 355 ~~l~~~m~~~g~~p~~ 370 (493)
.++.+.+.+.|..+|.
T Consensus 88 ~~iv~~Ll~~Gadin~ 103 (494)
T PHA02989 88 KKIVKLLLKFGADINL 103 (494)
T ss_pred HHHHHHHHHCCCCCCC
Confidence 4455555566655543
No 405
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=31.30 E-value=4.9e+02 Score=25.12 Aligned_cols=128 Identities=10% Similarity=-0.010 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-------HHHHHHhcCCCCHHHHHHHHHH----HhhcCCCCCCHHH
Q 011102 269 TAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYA-------KLILELGKNPDKYMLVMTLLDE----LGQRDDLNLSQQD 337 (493)
Q Consensus 269 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-------~li~~~~~~~~~~~~a~~l~~~----m~~~~g~~p~~~~ 337 (493)
+.+-..+.+++++|...+.+....|+..|..+.| -+..-|... |++...-++... |..- .-.-.+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~-g~~~~l~~~i~~sre~m~~f-tk~k~~Ki 86 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSK-GDYCSLGDTITSSREAMEDF-TKPKITKI 86 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhc-CCcchHHHHHHhhHHHHHHh-cchhHHHH
Q ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHH-----HHHHHHHHcCCCHHHHHHHHHHHHH
Q 011102 338 CTAIMKVGIRLQK-FGVVESLFHWFTHSGRDPTVVMY-----TTLIHSRLSEKKCREALTVVWNMEA 398 (493)
Q Consensus 338 ~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~ty-----~~li~~~~~~g~~~~A~~l~~~M~~ 398 (493)
..+||..+-...+ ++....+.....+....-..... .-+|..+.+.|++.+|+.+.+....
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
No 406
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.74 E-value=5.6e+02 Score=26.96 Aligned_cols=45 Identities=16% Similarity=0.050 Sum_probs=24.3
Q ss_pred HHHHHHHHH-HHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 011102 280 KLAWKLLMV-AKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327 (493)
Q Consensus 280 ~~A~~l~~~-m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~ 327 (493)
++..+.+.. +.+.|+..+......++... . |++..+...++.+..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~-GdlR~aln~Lekl~~ 223 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLA--D-GAMRDAESLLERLLA 223 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--C-CCHHHHHHHHHHHHh
Confidence 344444433 34456666666555554333 2 667777776666543
No 407
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=30.67 E-value=1.6e+02 Score=20.17 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=21.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 011102 446 MIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483 (493)
Q Consensus 446 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~ 483 (493)
+--|+.+.|++++|.+..+.+.+ +.|+-.-...|-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHH
Confidence 34456677777777777777665 4666655555544
No 408
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=29.54 E-value=5.1e+02 Score=24.83 Aligned_cols=114 Identities=17% Similarity=0.084 Sum_probs=71.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 011102 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR 347 (493)
Q Consensus 268 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~ 347 (493)
.++..+.+..++....+.+..++ ....-...|..+... |++..|+++..+..+. .. +...|+++=+.-
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~-~dy~~Al~li~~~~~~--l~-~l~~~~c~~~L~-- 170 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEE-GDYPGALDLIEECQQL--LE-ELKGYSCVRHLS-- 170 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHH--HH-hcccchHHHHHh--
Confidence 46677777777777777777775 355566788889999 9999999999887654 10 111122111111
Q ss_pred cCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 011102 348 LQKFGVVESLFHWFTHS-----GRDPTVVMYTTLIHSRLSEKKCREALTVVW 394 (493)
Q Consensus 348 ~g~~~~A~~l~~~m~~~-----g~~p~~~ty~~li~~~~~~g~~~~A~~l~~ 394 (493)
.++++-....+++.+. -..-|...|..++.||.-.|+...+.+=+.
T Consensus 171 -~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 171 -SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 1233333333333221 125788899999999999998776654443
No 409
>PRK12356 glutaminase; Reviewed
Probab=29.43 E-value=5.5e+02 Score=25.13 Aligned_cols=69 Identities=10% Similarity=0.039 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhccCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 011102 227 HLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKG--VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAK 303 (493)
Q Consensus 227 g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 303 (493)
|+.|+-..||+++..-...|. -.+.|.|.+ +-.+||.+-....+++..+++++++-...+..|..+|.+
T Consensus 93 G~EPSG~~FNsi~~Le~~~g~--------P~NPmINAGAI~~~sll~g~~~~~~~~~il~~~~~~ag~~l~~de~v~~S 163 (319)
T PRK12356 93 GADPTGLPFNSVIAIELHGGK--------PLNPLVNAGAIATTSLVPGANSDERWQRILDGQQRFAGRELALSDEVYQS 163 (319)
T ss_pred CCCCCCCCcchHHHhhccCCC--------CCCccccHHHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCccCHHHHHH
Confidence 788888888888755444343 144555554 234455542222334555666666665556777777654
No 410
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=29.34 E-value=7.2e+02 Score=26.46 Aligned_cols=199 Identities=8% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011102 279 LKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLF 358 (493)
Q Consensus 279 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 358 (493)
.+...++.+.....--.+....|..|+..+-.. ..++..+++.++.. .. ...+..++++....|-.....-+.
T Consensus 291 ~~~l~~L~~~~~~~~~~~~~~~f~~lv~~lR~~--~~e~l~~l~~~~~~-~~----~~~r~~~~Dal~~~GT~~a~~~i~ 363 (574)
T smart00638 291 VEVLKHLVQDIASDVQEPAAAKFLRLVRLLRTL--SEEQLEQLWRQLYE-KK----KKARRIFLDAVAQAGTPPALKFIK 363 (574)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhC--CHHHHHHHHHHHHh-CC----HHHHHHHHHHHHhcCCHHHHHHHH
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCC-------HHH
Q 011102 359 HWFTHSGRDP-TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL-------PAYRVVIKLFVALND-------ISR 423 (493)
Q Consensus 359 ~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~-------~ty~~li~~~~~~g~-------~~~ 423 (493)
+.+....+.+ .....-..+-...+.-..+-...+++-+....+.+.. .+|.++++-+|.... -+-
T Consensus 364 ~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~ 443 (574)
T smart00638 364 QWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEEL 443 (574)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHH
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHh
Q 011102 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484 (493)
Q Consensus 424 A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~~ 484 (493)
...+.+.+.+.--.-|..--...|.+++..|...-...+-.-+....-.|...-..++..+
T Consensus 444 ~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Al 504 (574)
T smart00638 444 LKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILAL 504 (574)
T ss_pred HHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHH
No 411
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=29.32 E-value=4.1e+02 Score=28.73 Aligned_cols=169 Identities=10% Similarity=-0.009 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc-
Q 011102 270 AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRL- 348 (493)
Q Consensus 270 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~- 348 (493)
...+.-.|+++.|.+.+-. ..+...|.+.+...+.-|+-. +-..... ..+.....-.|...-+..||..|++.
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL-~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLL-RVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT----------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCC-CCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC---------------CCCCHHHHHHH
Q 011102 349 --QKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN---------------CLFDLPAYRVV 411 (493)
Q Consensus 349 --g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g---------------i~pd~~ty~~l 411 (493)
.+..+|.+.|--+....-+-....+...+.-+.-..+ +-..++-.+...| +..+..-...+
T Consensus 339 ~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletr--ef~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i 416 (613)
T PF04097_consen 339 EITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETR--EFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREI 416 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH----HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHH
T ss_pred hccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccC--CHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHH
Q ss_pred HHH----HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 412 IKL----FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 412 i~~----~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
+.. +-..|++++|..+|+... +++.|.+++.+...
T Consensus 417 ~~~~A~~~e~~g~~~dAi~Ly~La~----------------------~~d~vl~lln~~Ls 455 (613)
T PF04097_consen 417 IEQAAREAEERGRFEDAILLYHLAE----------------------EYDKVLSLLNRLLS 455 (613)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHTT-----------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHh----------------------hHHHHHHHHHHHHH
No 412
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=29.28 E-value=7e+02 Score=26.28 Aligned_cols=86 Identities=13% Similarity=0.191 Sum_probs=52.7
Q ss_pred HHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC------CC----------CCHHHHHHHHH
Q 011102 351 FGVVESLFHWF-THSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN------CL----------FDLPAYRVVIK 413 (493)
Q Consensus 351 ~~~A~~l~~~m-~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g------i~----------pd~~ty~~li~ 413 (493)
.++..+.+... .+.|+..+......++. ...|++..|+.+++.+...+ +. ++....-.|++
T Consensus 189 ~~el~~~L~~i~~~egi~ie~eAL~~Ia~--~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ 266 (507)
T PRK06645 189 FEEIFKLLEYITKQENLKTDIEALRIIAY--KSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVE 266 (507)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHH
Confidence 34445555443 45787777777666665 34689999999998874421 11 22222333444
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC
Q 011102 414 LFVALNDISRAIRYFSKLKEAGFCPT 439 (493)
Q Consensus 414 ~~~~~g~~~~A~~~~~~m~~~g~~p~ 439 (493)
+.. .|+.+.|..+++++...|..|.
T Consensus 267 ai~-~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 267 YII-HRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred HHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 444 3777788888888877776543
No 413
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.26 E-value=6.9e+02 Score=26.26 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=50.2
Q ss_pred HHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH------------HHHHHHHHHHHc
Q 011102 352 GVVESLFHW-FTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP------------AYRVVIKLFVAL 418 (493)
Q Consensus 352 ~~A~~l~~~-m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~------------ty~~li~~~~~~ 418 (493)
++..+.+.. +.+.|+..+......++... .|++..|..+++.+...+-..+.. ....+++++ ..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~ 254 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQ 254 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-Hc
Confidence 444555544 44578877777666666533 588999998888866543221211 122334444 44
Q ss_pred CCHHHHHHHHHHHHHCCCCC
Q 011102 419 NDISRAIRYFSKLKEAGFCP 438 (493)
Q Consensus 419 g~~~~A~~~~~~m~~~g~~p 438 (493)
++.++|..++++|...|..|
T Consensus 255 ~d~~~Al~~l~~Ll~~G~~~ 274 (504)
T PRK14963 255 GDAAEALSGAAQLYRDGFAA 274 (504)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 67777777777777766543
No 414
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=29.21 E-value=7.1e+02 Score=28.08 Aligned_cols=99 Identities=14% Similarity=0.205 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 011102 316 MLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWN 395 (493)
Q Consensus 316 ~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 395 (493)
++..+++.++.+..|+..+......++... .|++..++.+++++.. +.....+++. .+.+++
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia-~~~~~~IT~e-------------~V~all-- 243 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLA-GAGPEGVTYE-------------RAVALL-- 243 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHh-hcCCCCCCHH-------------HHHHHh--
Confidence 344444444433335655555555444433 3566666666665542 1111222222 222222
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 011102 396 MEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP 438 (493)
Q Consensus 396 M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 438 (493)
|. .+......++++.. .++...++.+++++.+.|..|
T Consensus 244 ----g~-~~~~~I~~lidAL~-~~D~a~al~~l~~Li~~G~dp 280 (824)
T PRK07764 244 ----GV-TDSALIDEAVDALA-AGDGAALFGTVDRVIEAGHDP 280 (824)
T ss_pred ----cC-CCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCH
Confidence 11 23334445666665 577888999999999888753
No 415
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=28.98 E-value=8.7e+02 Score=27.31 Aligned_cols=196 Identities=10% Similarity=-0.049 Sum_probs=111.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC----CH---HHHHHHHHHHhcCCCCHHHHHHHHHHHhhc---CCCCCCHHHHHHHHHH
Q 011102 275 KGGNLKLAWKLLMVAKDGGRML----DP---SIYAKLILELGKNPDKYMLVMTLLDELGQR---DDLNLSQQDCTAIMKV 344 (493)
Q Consensus 275 ~~g~~~~A~~l~~~m~~~g~~p----d~---~t~~~li~~~~~~~~~~~~a~~l~~~m~~~---~g~~p~~~~~~~li~~ 344 (493)
-..++++|..++.+....--.| .. ..|+.+-.-.....|+.++|.++-+..... .-..+..+.+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 4578888888888776532222 22 245555444444447888888887765543 1233456677777888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHH--HHHcCCC--HHHHHHHHHHHHHC--CCC----CCHHHHHHH
Q 011102 345 GIRLQKFGVVESLFHWFTHSGRDPTVVM---YTTLIH--SRLSEKK--CREALTVVWNMEAS--NCL----FDLPAYRVV 411 (493)
Q Consensus 345 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t---y~~li~--~~~~~g~--~~~A~~l~~~M~~~--gi~----pd~~ty~~l 411 (493)
..-.|++++|..+..+-.+.--.-++.. |..++. .+-..|+ ..+.+..|...... +-+ +-..++.-+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 8888999999888776654322333333 333322 2344553 23333334433322 111 223456666
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCC
Q 011102 412 IKLFVAL-NDISRAIRYFSKLKEAGFCPTYDIYR--DMIRIFMASGRLAKCRDVCKEAEMAG 470 (493)
Q Consensus 412 i~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~ty~--~li~~~~~~g~~~~A~~l~~~m~~~g 470 (493)
+.++.+. +...+|..-++--......|-...+. .|+..+...|+.++|...++++....
T Consensus 587 l~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 587 LRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 6666552 22233333333333444444444343 67888889999999999999987643
No 416
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=28.60 E-value=89 Score=22.51 Aligned_cols=49 Identities=4% Similarity=-0.049 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 011102 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS 382 (493)
Q Consensus 333 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~ 382 (493)
|....++.++..+++..-++++...+++..+.|. .+..+|---++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3344455555555555555555555555554443 344444444444444
No 417
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=28.55 E-value=91 Score=23.30 Aligned_cols=81 Identities=11% Similarity=0.093 Sum_probs=36.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHH
Q 011102 345 GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP--AYRVVIKLFVALNDIS 422 (493)
Q Consensus 345 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~--ty~~li~~~~~~g~~~ 422 (493)
.++.|+++-...++ +.|...+. -++.+.-.+..|+. ++++.+.+.|..++.. .-.+.+...+..|+.+
T Consensus 4 A~~~~~~~~~~~ll----~~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 73 (89)
T PF12796_consen 4 AAQNGNLEILKFLL----EKGADINL--GNTALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHYAAENGNLE 73 (89)
T ss_dssp HHHTTTHHHHHHHH----HTTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHH
T ss_pred HHHcCCHHHHHHHH----HCcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHHHHHcCCHH
Confidence 44556654444333 34444444 22344444555654 3444444456555543 1122333344455543
Q ss_pred HHHHHHHHHHHCCCCCC
Q 011102 423 RAIRYFSKLKEAGFCPT 439 (493)
Q Consensus 423 ~A~~~~~~m~~~g~~p~ 439 (493)
+++.+.+.|..++
T Consensus 74 ----~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 74 ----IVKLLLEHGADVN 86 (89)
T ss_dssp ----HHHHHHHTTT-TT
T ss_pred ----HHHHHHHcCCCCC
Confidence 4444455565554
No 418
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=28.47 E-value=2e+02 Score=23.28 Aligned_cols=26 Identities=8% Similarity=0.142 Sum_probs=18.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011102 340 AIMKVGIRLQKFGVVESLFHWFTHSG 365 (493)
Q Consensus 340 ~li~~~~~~g~~~~A~~l~~~m~~~g 365 (493)
++|+-+.+|...++|+++.+.|.+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 35566667777777777777777665
No 419
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.57 E-value=1e+02 Score=23.22 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=22.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC
Q 011102 445 DMIRIFMASGRLAKCRDVCKEAEMAG 470 (493)
Q Consensus 445 ~li~~~~~~g~~~~A~~l~~~m~~~g 470 (493)
++++-+.++.-.++|+++++-|.++|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 56677888889999999999999988
No 420
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=27.51 E-value=9.1e+02 Score=27.05 Aligned_cols=36 Identities=17% Similarity=0.117 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 011102 368 PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404 (493)
Q Consensus 368 p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd 404 (493)
.|...+..+++.+.. |+..+++.++++|...|+.+.
T Consensus 244 ~d~~~i~~ll~aL~~-~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 244 LDQTYMVRLLDALAA-GDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 333345555554444 778888888888877776543
No 421
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.45 E-value=5.5e+02 Score=24.51 Aligned_cols=130 Identities=9% Similarity=0.030 Sum_probs=65.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHhcCCCCHHHHHHHHHHH----hhcCCCCCCHHH
Q 011102 267 EATAKGFVKGGNLKLAWKLLMVAKDG---GR--MLDPSIYAKLILELGKNPDKYMLVMTLLDEL----GQRDDLNLSQQD 337 (493)
Q Consensus 267 ~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m----~~~~g~~p~~~~ 337 (493)
--+|..+.+.|++++.++.+.+|... .+ .-+..+.|++++-.+.. ...+...++++.- +...+-..--.|
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS-~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS-KNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 44667777777777777777776431 11 12344566666655544 4444444443321 111000111112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011102 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGR-----------DPTVVMYTTLIHSRLSEKKCREALTVVWNME 397 (493)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----------~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~ 397 (493)
-+-|-..|...|.+....+++.++...-- .-=...|..=|+.|....+-.+-..++++..
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 23444455555566666666666543210 1113446666677776666666666666543
No 422
>PRK09857 putative transposase; Provisional
Probab=27.42 E-value=4.1e+02 Score=25.59 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=12.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC
Q 011102 415 FVALNDISRAIRYFSKLKEAGFCPT 439 (493)
Q Consensus 415 ~~~~g~~~~A~~~~~~m~~~g~~p~ 439 (493)
+.+.|.-+++.++..+|...|+.++
T Consensus 250 L~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 250 LRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3333333455555666665565433
No 423
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.06 E-value=3.2e+02 Score=23.81 Aligned_cols=64 Identities=5% Similarity=-0.018 Sum_probs=46.6
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 011102 359 HWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423 (493)
Q Consensus 359 ~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~ 423 (493)
+.+++.|+..+..=- .++..+...++.-.|.++++.+.+.+...+..|.=-.|..+...|-+.+
T Consensus 15 ~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 15 KLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 335667877766543 5555555667777899999999998887888776667788888886644
No 424
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=26.93 E-value=6.7e+02 Score=25.32 Aligned_cols=213 Identities=14% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCCHHH----HHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcCC
Q 011102 203 VRELGHMNLPERALQTFCWAQKQPHLFPDDRL----LASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGN 278 (493)
Q Consensus 203 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t----~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g~ 278 (493)
+..++ .++.+.|++-+-...++....-|..+ +..+++.|...++|+.--.. +....-+.|+
T Consensus 20 ~~~la-~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~--------------i~~Lskkrgq 84 (439)
T KOG1498|consen 20 ANNLA-QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQ--------------IRLLSKKRGQ 84 (439)
T ss_pred hhhhh-hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHH--------------HHHHHHHhhH
Q ss_pred HHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011102 279 LKLAWK--LLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356 (493)
Q Consensus 279 ~~~A~~--l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 356 (493)
...|.. +.+.|.-..-.||..|--.+|..+-.- .+-++|-+.++. ..-..|..-+-.+|++++|..
T Consensus 85 lk~ai~~Mvq~~~~y~~~~~d~~~k~~li~tLr~V-----tegkIyvEvERa-------rlTk~L~~ike~~Gdi~~Aa~ 152 (439)
T KOG1498|consen 85 LKQAIQSMVQQAMTYIDGTPDLETKIKLIETLRTV-----TEGKIYVEVERA-------RLTKMLAKIKEEQGDIAEAAD 152 (439)
T ss_pred HHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHh-----hcCceEEeehHH-------HHHHHHHHHHHHcCCHHHHHH
Q ss_pred HHHHHHHcCCCCCHHHHHHH------------HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH------HHHHHHHHHHc
Q 011102 357 LFHWFTHSGRDPTVVMYTTL------------IHSRLSEKKCREALTVVWNMEASNCLFDLPA------YRVVIKLFVAL 418 (493)
Q Consensus 357 l~~~m~~~g~~p~~~ty~~l------------i~~~~~~g~~~~A~~l~~~M~~~gi~pd~~t------y~~li~~~~~~ 418 (493)
++.+.. +.||+++ ++-|.-.+++-.|.-+-+.+..+=+.-+... |+.+|....+.
T Consensus 153 il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~ 225 (439)
T KOG1498|consen 153 ILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHD 225 (439)
T ss_pred HHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccc
Q ss_pred CCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHH
Q 011102 419 NDISRAIRYFSKLK-EAGFCPTYDIYRDMIRI 449 (493)
Q Consensus 419 g~~~~A~~~~~~m~-~~g~~p~~~ty~~li~~ 449 (493)
+.+=.+.+.++... ...++-|..-|.-.+.+
T Consensus 226 ~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~ 257 (439)
T KOG1498|consen 226 RAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRS 257 (439)
T ss_pred cchhhHHHHHHHHhcccccccChhhhhhhhhh
No 425
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=26.70 E-value=7.2e+02 Score=25.62 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 011102 408 YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471 (493)
Q Consensus 408 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 471 (493)
...|+.-|.-.|++.+|.+.++++----+ -..+.|.+++.+.-+.|+-+.-+.++++.-+.|+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfF-hHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFF-HHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 56789999999999999999988642111 2467799999999999998888888887766553
No 426
>PHA01351 putative minor structural protein
Probab=26.57 E-value=8.7e+02 Score=26.50 Aligned_cols=87 Identities=13% Similarity=0.075 Sum_probs=55.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhccC-cHHHHHHHHHHHHhcCCH
Q 011102 201 FTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLA-SKGVLEATAKGFVKGGNL 279 (493)
Q Consensus 201 ~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~~-~~~~~~~li~~~~~~g~~ 279 (493)
++-..+-..|-+++...+|+.|..+..+--+....-..+...++.|=++..+.-..+.... +...-..++..+.+.-..
T Consensus 450 t~~~lfkel~~p~~v~~~f~~mi~qsqliq~nqll~~~l~sl~skGi~DqkkIke~LKa~gfnks~~d~~L~~~~n~a~i 529 (1070)
T PHA01351 450 TIAKLFKDLGYPEEVRTVFDTMITQSQLIQTNQLLLRQLQQIVSLGIFDQKKIKEELKANKFNEQVALQILESELQFAQL 529 (1070)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcccccHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 3444666778899999999999976322222222233455567778777766555555433 444455677777777677
Q ss_pred HHHHHHHH
Q 011102 280 KLAWKLLM 287 (493)
Q Consensus 280 ~~A~~l~~ 287 (493)
+..+++++
T Consensus 530 esqIK~LQ 537 (1070)
T PHA01351 530 QNQLKEYQ 537 (1070)
T ss_pred HHHHHHHH
Confidence 77777666
No 427
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.39 E-value=7.5e+02 Score=25.74 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=20.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH
Q 011102 374 TTLIHSRLSEKKCREALTVVWNMEASNCLFDLPA 407 (493)
Q Consensus 374 ~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~t 407 (493)
..++++. +.++.++|+.++.+|...|..|....
T Consensus 248 ~~li~si-~~~d~~~Al~~l~~ll~~Gedp~~i~ 280 (472)
T PRK14962 248 RDYINAI-FNGDVKRVFTVLDDVYYSGKDYEVLI 280 (472)
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 3344433 34677777777777777776665543
No 428
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.07 E-value=3.2e+02 Score=23.82 Aligned_cols=61 Identities=10% Similarity=0.042 Sum_probs=43.1
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 011102 325 LGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387 (493)
Q Consensus 325 m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 387 (493)
++.. |++.+..-. +++..+...++.-.|.++++.+.+.+...+..|-.--|+.+.+.|-+.
T Consensus 17 L~~~-GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQR-NVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHc-CCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3444 777776654 455555556777789999999999888778777666667777777543
No 429
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.04 E-value=3.5e+02 Score=25.25 Aligned_cols=53 Identities=11% Similarity=0.223 Sum_probs=26.3
Q ss_pred HHHHcCCHHHHHHHHHHHH----HCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 414 LFVALNDISRAIRYFSKLK----EAG-FCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466 (493)
Q Consensus 414 ~~~~~g~~~~A~~~~~~m~----~~g-~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 466 (493)
-|.+.|++++|.++|+.+. +.| ..+...+...+..++.+.|+.++...+.=+|
T Consensus 187 ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 187 EYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3555566666666665553 111 1223334445555555666666655554333
No 430
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=25.94 E-value=2.4e+02 Score=28.48 Aligned_cols=126 Identities=12% Similarity=0.079 Sum_probs=64.7
Q ss_pred HHHHHHHHcCCCCCHHH---HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--H--HHHHcCCHHHHHHHH
Q 011102 356 SLFHWFTHSGRDPTVVM---YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI--K--LFVALNDISRAIRYF 428 (493)
Q Consensus 356 ~l~~~m~~~g~~p~~~t---y~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li--~--~~~~~g~~~~A~~~~ 428 (493)
-+++.+.+.|+.|++++ -.+++.++...+..++..+++... . .|...+...- . ++...+..+.-...+
T Consensus 100 Gv~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~~~---~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 174 (391)
T cd07229 100 GVVKALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFLDGD---G--IDLSAFNRLRGKKSLGYSGYGWLGTLGRRI 174 (391)
T ss_pred HHHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHhcc---c--hhhhhhhhhccccccccccccccchHHHHH
Confidence 35566677777877643 566777776666666666666531 0 1111111100 0 111111222233344
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------HHCCCccCHHHHHHHHHhhh
Q 011102 429 SKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA----------------EMAGFKLDKQTVVELLQIEK 486 (493)
Q Consensus 429 ~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m----------------~~~g~~pd~~t~~~Ll~~~~ 486 (493)
+.+...|.-.|...+.-.++.+...-.++||.+--... ...--.||...|+++.-.|.
T Consensus 175 ~r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a 248 (391)
T cd07229 175 QRLLREGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNA 248 (391)
T ss_pred HHHHcCCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcC
Confidence 44455565566666666666655555566665321111 11113688888888876543
No 431
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.35 E-value=1.2e+02 Score=22.89 Aligned_cols=26 Identities=8% Similarity=0.170 Sum_probs=23.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011102 340 AIMKVGIRLQKFGVVESLFHWFTHSG 365 (493)
Q Consensus 340 ~li~~~~~~g~~~~A~~l~~~m~~~g 365 (493)
++++-+.+|.-.++|+++.+-|.+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 56788889999999999999999877
No 432
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.60 E-value=9.9e+02 Score=26.50 Aligned_cols=75 Identities=11% Similarity=-0.022 Sum_probs=42.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 011102 269 TAKGFVKGGNLKLAWKLLMVAKDGGRML---DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVG 345 (493)
Q Consensus 269 li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~ 345 (493)
=|+-+.+.+.+++|+++-+.-. |..| -...+...|..+.-. |++++|-.+.-.|... +..-|--.+.-+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~-~~y~~Aas~~p~m~gn-----~~~eWe~~V~~f 433 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFE-GKYDEAASLCPKMLGN-----NAAEWELWVFKF 433 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhc-chHHHHHhhhHHHhcc-----hHHHHHHHHHHh
Confidence 3556666777777776655432 3333 234556677777666 7777777666666543 344444444444
Q ss_pred HHcCCH
Q 011102 346 IRLQKF 351 (493)
Q Consensus 346 ~~~g~~ 351 (493)
...++.
T Consensus 434 ~e~~~l 439 (846)
T KOG2066|consen 434 AELDQL 439 (846)
T ss_pred cccccc
Confidence 444443
No 433
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=24.50 E-value=4e+02 Score=21.91 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011102 405 LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT-YDIYRDMIRIFMASGRLAKCRDVCKE 465 (493)
Q Consensus 405 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~ 465 (493)
..-|--+--.|++.-+ ++.++|+.|..+|+--. ..-|......+...|++++|.++|+.
T Consensus 65 D~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 65 DERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp -HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3444444444554333 78888888887666433 44567777777788888888888764
No 434
>PRK13342 recombination factor protein RarA; Reviewed
Probab=24.10 E-value=7.6e+02 Score=25.01 Aligned_cols=121 Identities=19% Similarity=0.129 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHc---CC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHH------------------HHCCCCCCHHH
Q 011102 350 KFGVVESLFHWFTHS---GR-DPTVVMYTTLIHSRLSEKKCREALTVVWNM------------------EASNCLFDLPA 407 (493)
Q Consensus 350 ~~~~A~~l~~~m~~~---g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~M------------------~~~gi~pd~~t 407 (493)
..++...++...... |+ ..+......++... .|+..+++.+++.. .......+...
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~ 229 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDE 229 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccH
Q ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCc
Q 011102 408 YRVVIKLFVAL---NDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG-----RLAKCRDVCKEAEMAGFK 472 (493)
Q Consensus 408 y~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~ 472 (493)
+-.++.++.+. ++.+.|..++..|.+.|..|....-..++.++-..| ...-|...++....-|+.
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
No 435
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.94 E-value=7.1e+02 Score=24.61 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=53.3
Q ss_pred HHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC---CCCC----------CHHHHHHHHHHHHH
Q 011102 352 GVVESLFH-WFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS---NCLF----------DLPAYRVVIKLFVA 417 (493)
Q Consensus 352 ~~A~~l~~-~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~---gi~p----------d~~ty~~li~~~~~ 417 (493)
++....+. ...+.|+..+......++.. ..|+...|...++.+... ++.. ...+.-.++++. .
T Consensus 170 ~~l~~~l~~~~~~~g~~i~~~al~~l~~~--~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~l~~ai-~ 246 (367)
T PRK14970 170 KDIKEHLAGIAVKEGIKFEDDALHIIAQK--ADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYINVTDLI-L 246 (367)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHHHHHHH-H
Confidence 34444443 34567877777777777663 347899999988886531 1111 111122244444 3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011102 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDM 446 (493)
Q Consensus 418 ~g~~~~A~~~~~~m~~~g~~p~~~ty~~l 446 (493)
.|+..+|..+++.+...|..| ......+
T Consensus 247 ~~~~~~a~~~~~~l~~~~~~~-~~il~~l 274 (367)
T PRK14970 247 ENKIPELLLAFNEILRKGFDG-HHFIAGL 274 (367)
T ss_pred cCCHHHHHHHHHHHHHcCCCH-HHHHHHH
Confidence 478888888888888777665 3333333
No 436
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.86 E-value=1.8e+02 Score=23.25 Aligned_cols=35 Identities=9% Similarity=-0.028 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011102 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALND 420 (493)
Q Consensus 386 ~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~ 420 (493)
.-.|.++++.+.+.+...+..|.--.|+.+...|-
T Consensus 16 ~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 16 HLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred CCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33444444444444433444443334444444443
No 437
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=23.36 E-value=7.7e+02 Score=24.77 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=7.6
Q ss_pred CCHHHHHHHHHHHhh
Q 011102 313 DKYMLVMTLLDELGQ 327 (493)
Q Consensus 313 ~~~~~a~~l~~~m~~ 327 (493)
+++..|.++|+++..
T Consensus 145 ~~y~aA~~~l~~l~~ 159 (379)
T PF09670_consen 145 YDYGAAARILEELLR 159 (379)
T ss_pred CCHHHHHHHHHHHHH
Confidence 455555555555444
No 438
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=23.13 E-value=3.8e+02 Score=21.16 Aligned_cols=23 Identities=4% Similarity=-0.127 Sum_probs=12.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 011102 340 AIMKVGIRLQKFGVVESLFHWFT 362 (493)
Q Consensus 340 ~li~~~~~~g~~~~A~~l~~~m~ 362 (493)
.+|.-|...|++++|.+-+.++.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC
Confidence 34455555555555555555554
No 439
>PHA02798 ankyrin-like protein; Provisional
Probab=22.79 E-value=4.6e+02 Score=27.24 Aligned_cols=82 Identities=17% Similarity=0.106 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCCCCHHH---HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHH
Q 011102 355 ESLFHWFTHSGRDPTVVM---YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPA--YRVVIKLFVALNDISRAIRYFS 429 (493)
Q Consensus 355 ~~l~~~m~~~g~~p~~~t---y~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~t--y~~li~~~~~~g~~~~A~~~~~ 429 (493)
.++.+.+.+.|..+|... .+.|..+ +..+.. .-.++++.+.+.|..++... ..+.+..+++.|.- .-.++.+
T Consensus 89 ~~iv~~Ll~~GadiN~~d~~G~TpLh~a-~~~~~~-~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~-~~~~vv~ 165 (489)
T PHA02798 89 LDIVKILIENGADINKKNSDGETPLYCL-LSNGYI-NNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHH-IDIEIIK 165 (489)
T ss_pred HHHHHHHHHCCCCCCCCCCCcCcHHHHH-HHcCCc-ChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCc-chHHHHH
Confidence 556666666666655432 2333322 222221 22344444455565554332 12334444444430 1122333
Q ss_pred HHHHCCCCCC
Q 011102 430 KLKEAGFCPT 439 (493)
Q Consensus 430 ~m~~~g~~p~ 439 (493)
.+.+.|..++
T Consensus 166 ~Ll~~gadin 175 (489)
T PHA02798 166 LLLEKGVDIN 175 (489)
T ss_pred HHHHhCCCcc
Confidence 4445555444
No 440
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=22.71 E-value=7.5e+02 Score=25.73 Aligned_cols=116 Identities=9% Similarity=0.009 Sum_probs=70.0
Q ss_pred cCCHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 011102 276 GGNLKLA-WKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVV 354 (493)
Q Consensus 276 ~g~~~~A-~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 354 (493)
.|++-.| .+++..+...--.|+.+...+.|- ... |.++.+.+.+...... +.....+-.+++...-+.|++++|
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~--~~l-g~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIF--SHL-GYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHH--HHh-hhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHH
Confidence 4555444 445566665555566665555443 334 7778888887776553 555667778888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011102 355 ESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397 (493)
Q Consensus 355 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~ 397 (493)
..+-..|....++-..+ ...-.-..-..|-+++++..|++..
T Consensus 377 ~s~a~~~l~~eie~~ei-~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEV-LTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHHHhccccCChhh-eeeecccHHHHhHHHHHHHHHHHHh
Confidence 88888777554432211 1111112223456677777776654
No 441
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=22.59 E-value=6.3e+02 Score=24.74 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=18.7
Q ss_pred HHcCCHHHHHHHHHHHHHCCCccCHH
Q 011102 451 MASGRLAKCRDVCKEAEMAGFKLDKQ 476 (493)
Q Consensus 451 ~~~g~~~~A~~l~~~m~~~g~~pd~~ 476 (493)
...|+..+|..+++++...|..|=..
T Consensus 219 il~g~~~~a~~~l~~L~~~ge~p~~i 244 (334)
T COG1466 219 LLKGDVKKALRLLRDLLLEGEEPLKL 244 (334)
T ss_pred HHCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 34578888888888888877766433
No 442
>PRK11619 lytic murein transglycosylase; Provisional
Probab=22.34 E-value=1e+03 Score=25.91 Aligned_cols=262 Identities=10% Similarity=-0.002 Sum_probs=116.7
Q ss_pred HhhccCCCCHHHHHHHHhhhcccC-cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhh
Q 011102 174 IKGLDSHKDVAEVLDKCGRFLRKG-SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPF 252 (493)
Q Consensus 174 l~~~~~~~~~~~a~~~~~~m~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~ 252 (493)
+..+.+.++....+..+...+... .-.....+....|+.++|......+=......|+ ..+.+++.+.+.|.+....
T Consensus 106 l~~La~~~~w~~~~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~--~cd~l~~~~~~~g~lt~~d 183 (644)
T PRK11619 106 VNELARREDWRGLLAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPN--ACDKLFSVWQQSGKQDPLA 183 (644)
T ss_pred HHHHHHccCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCh--HHHHHHHHHHHcCCCCHHH
Confidence 344556677777777443333322 3345566777778877776666555333233343 5688888888877765444
Q ss_pred hHHHhhccCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCC
Q 011102 253 KLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN 332 (493)
Q Consensus 253 ~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~ 332 (493)
....+ ......|+...|..+...+ .++...+.....+..+.+ ..+..++.. +.
T Consensus 184 ~w~R~-------------~~al~~~~~~lA~~l~~~l-----~~~~~~~a~a~~al~~~p---~~~~~~~~~------~~ 236 (644)
T PRK11619 184 YLERI-------------RLAMKAGNTGLVTYLAKQL-----PADYQTIASALIKLQNDP---NTVETFART------TG 236 (644)
T ss_pred HHHHH-------------HHHHHCCCHHHHHHHHHhc-----ChhHHHHHHHHHHHHHCH---HHHHHHhhc------cC
Confidence 33222 2223345555554444433 122222221222222221 112111111 11
Q ss_pred CCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHc-CCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH
Q 011102 333 LSQQDCTAIMKVGIR--LQKFGVVESLFHWFTHS-GRDPTV--VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPA 407 (493)
Q Consensus 333 p~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~-g~~p~~--~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~t 407 (493)
++...-..++.++.+ ..+.+.|..++...... +..+.. ..+..+....+..+...+|.+.++...... .|...
T Consensus 237 ~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~ 314 (644)
T PRK11619 237 PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSL 314 (644)
T ss_pred CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHH
Confidence 222111111222221 23346666666665322 222211 223334333333322445544444332211 13333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 408 YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 408 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
...-+..-.+.++++.+...+..|....-. ...-.--+-.++...|+.++|...|+...
T Consensus 315 ~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 315 LERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 333344444666776666666666432111 11222234444455677777777766653
No 443
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.30 E-value=4.3e+02 Score=22.38 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 011102 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTV 370 (493)
Q Consensus 330 g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 370 (493)
|++++.. =-.++..+...++.-.|.++++++.+.+...+.
T Consensus 16 glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~isl 55 (145)
T COG0735 16 GLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISL 55 (145)
T ss_pred CCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCH
Confidence 5554433 234445555555556666666666655544443
No 444
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=22.28 E-value=1.8e+02 Score=23.18 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=33.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 011102 340 AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR 387 (493)
Q Consensus 340 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 387 (493)
.++..+...+..-.|.++++.+.+.+...+..|---.|+.+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 456666666677778888888888777677766666666666666543
No 445
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=22.14 E-value=9.4e+02 Score=25.36 Aligned_cols=178 Identities=11% Similarity=-0.023 Sum_probs=96.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 011102 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341 (493)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~l 341 (493)
|....-++++.|..+..+.-...+-.+|...| -+-..|-.++..|..+ .-++...+|+++.+. . -|.+....-
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en--~n~~l~~lWer~ve~-d--fnDvv~~Re 137 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN--GNEQLYSLWERLVEY-D--FNDVVIGRE 137 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc--CchhhHHHHHHHHHh-c--chhHHHHHH
Confidence 33444566666666666666666666666654 4555566666666665 235566666655543 2 233333333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 011102 342 MKVGIRLQKFGVVESLFHWFTHSGRDP-----TVVMYTTLIHSRLSEKKCREALTVVWNMEAS-NCLFDLPAYRVVIKLF 415 (493)
Q Consensus 342 i~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~-gi~pd~~ty~~li~~~ 415 (493)
+.-+...++.+.+...|.+....-++. =...|.-|+.- -..+.+..+.+....+.. |..--.+.+.-+-.-|
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 333333366666666666655332211 01233333331 124566666666666543 5555566666677777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011102 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449 (493)
Q Consensus 416 ~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~ 449 (493)
....++++|.+++..+.+..-+ |...-.-+|.-
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 7777777887777766654432 33333344443
No 446
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=22.09 E-value=9.4e+02 Score=25.33 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=28.8
Q ss_pred HHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 011102 279 LKLAWKLLM-VAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327 (493)
Q Consensus 279 ~~~A~~l~~-~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~ 327 (493)
.++..+.++ .+.+.|+..+......+... .. |.+..|..+++.+..
T Consensus 189 ~~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~-GslR~al~~Ldkai~ 235 (507)
T PRK06645 189 FEEIFKLLEYITKQENLKTDIEALRIIAYK--SE-GSARDAVSILDQAAS 235 (507)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cC-CCHHHHHHHHHHHHH
Confidence 344444443 34456777777776665553 23 788888888887643
No 447
>PLN03025 replication factor C subunit; Provisional
Probab=21.73 E-value=7.4e+02 Score=23.99 Aligned_cols=46 Identities=15% Similarity=0.222 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011102 403 FDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450 (493)
Q Consensus 403 pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~ 450 (493)
+.......+++++. .+++++|...+.+|...|..|...... +...+
T Consensus 223 ~~~~~i~~~i~~~~-~~~~~~a~~~l~~ll~~g~~~~~Il~~-l~~~~ 268 (319)
T PLN03025 223 PHPLHVKNIVRNCL-KGKFDDACDGLKQLYDLGYSPTDIITT-LFRVV 268 (319)
T ss_pred CCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHHHHHH-HHHHH
Confidence 33445555666654 588999999999999999987655443 34433
No 448
>PRK12357 glutaminase; Reviewed
Probab=21.69 E-value=7.7e+02 Score=24.19 Aligned_cols=70 Identities=10% Similarity=0.171 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHc-CCCchhhhHHHhhccCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 011102 227 HLFPDDRLLASTVEVLARH-HELKVPFKLENFVSLASKG--VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAK 303 (493)
Q Consensus 227 g~~pd~~t~~~li~~~~~~-g~~~~~~~l~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 303 (493)
|..|+-..||+++..=... |. -.+.|.|.+ +-++||.+-....+++..++.++++-...+..|..+|.+
T Consensus 97 G~EPSG~~FNSi~~Le~~~~g~--------P~NPmINAGAI~~~sll~g~~~~~r~~~il~~~~~lag~~l~~d~~v~~S 168 (326)
T PRK12357 97 DVEPTGDAFNSIIRLEIHKPGK--------PFNPMINAGAITVASLLPGTSVQEKLESLYVLIEKMIGKRPAINEEVFQS 168 (326)
T ss_pred CCCCCCCCcchhhhhhhcCCCC--------CCCCcccHHHHHHHHHhccCCchHHHHHHHHHHHHHhCCCCccCHHHHHH
Confidence 7788888888886433222 22 134455554 345555543334456667777777765566667766654
Q ss_pred H
Q 011102 304 L 304 (493)
Q Consensus 304 l 304 (493)
-
T Consensus 169 E 169 (326)
T PRK12357 169 E 169 (326)
T ss_pred H
Confidence 3
No 449
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=21.63 E-value=1.1e+03 Score=26.99 Aligned_cols=183 Identities=14% Similarity=0.101 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHhhc--------cCCCCHHHHHHHHhhhcccCcHHHHHHHHHhCCChH-HHHHHHHHHHhCCCCCCCH
Q 011102 162 KNPSFLISLARDIKGL--------DSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPE-RALQTFCWAQKQPHLFPDD 232 (493)
Q Consensus 162 ~~~~~l~~l~~~l~~~--------~~~~~~~~a~~~~~~m~~~~~~~~li~~~~~~g~~~-~A~~l~~~m~~~~g~~pd~ 232 (493)
+|++.+..+...+..+ -....+++.++.-+...+.-.-..|..-|+-..+.+ +|..+-..|.++.
T Consensus 1104 ~ypd~lpll~~~l~kl~~~sD~~kE~~~ki~eIl~~A~~Vi~~~D~eaL~~y~~~k~D~r~da~klk~~me~qk------ 1177 (1304)
T KOG1114|consen 1104 SYPDYLPLLEVRLAKLMQKSDAVKETNKKIEEILSAADSVIQEIDTEALARYYALKEDTRPDAVKLKKKMEKQK------ 1177 (1304)
T ss_pred hCcccchHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhcccCCcchHHHHHHHHHHHH------
Q ss_pred HHHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011102 233 RLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGN------LKLAWKLLMVAKDGGRMLDPSIYAKLIL 306 (493)
Q Consensus 233 ~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g~------~~~A~~l~~~m~~~g~~pd~~t~~~li~ 306 (493)
+++|.|+++.|. ....+ ..++++....- .+.-.+.|.++.+.--.-|..++..-..
T Consensus 1178 ---~tli~AL~kKg~--a~ak~-------------e~l~g~~e~daeee~s~ld~~~e~y~el~kw~d~~dsK~~~~a~~ 1239 (1304)
T KOG1114|consen 1178 ---DTLIDALVKKGE--AFAKY-------------EALKGHKEQDAEEELSKLDSYNENYQELLKWLDASDSKVWQIAKK 1239 (1304)
T ss_pred ---HHHHHHHHHhhh--HHhhh-------------hhhcccccccchhhhhhhhhHHHHHHHHHHHhhcCCchheehhHH
Q ss_pred HHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 011102 307 ELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMY 373 (493)
Q Consensus 307 ~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 373 (493)
-+... |++..|.+++.++.+..|-.++...|--++..+...|--..|--+=+.|. .+...+|
T Consensus 1240 ha~~~-~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H~~t~~~~~~~----v~~p~Sy 1301 (1304)
T KOG1114|consen 1240 HAKAL-GQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNHLATFVKNWMR----VPFPYSY 1301 (1304)
T ss_pred HHHHH-HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchHhHHHHhhhee----ccCCccc
No 450
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=21.60 E-value=2e+02 Score=22.99 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhcCCCCC
Q 011102 316 MLVMTLLDELGQRDDLNL 333 (493)
Q Consensus 316 ~~a~~l~~~m~~~~g~~p 333 (493)
++|.+.+.+++...|+.|
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~ 22 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTP 22 (105)
T ss_pred HHHHHHHHHHhcccCCCc
Confidence 456666666666666666
No 451
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=21.54 E-value=7.4e+02 Score=23.93 Aligned_cols=79 Identities=9% Similarity=-0.005 Sum_probs=49.7
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----C--CCC----------CHHHHHHHHHHHHHcCC
Q 011102 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS----N--CLF----------DLPAYRVVIKLFVALND 420 (493)
Q Consensus 357 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----g--i~p----------d~~ty~~li~~~~~~g~ 420 (493)
+-+.+.+.|+..+......|+.... ++...+..-++.+... + |.+ +...|. ++++.. .|+
T Consensus 139 i~~~~~~~g~~i~~~a~~~L~~~~g--~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~~~~if~-l~dai~-~~~ 214 (326)
T PRK07452 139 VERTAQELGVKLTPEAAELLAEAVG--NDSRRLYNELEKLALYAENSTKPISAEEVKALVSNTTQNSLQ-LADALL-QGN 214 (326)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhC--ccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccCcCcHHH-HHHHHH-CCC
Confidence 3455677899989888888888665 4666666666665432 1 111 112233 455544 377
Q ss_pred HHHHHHHHHHHHHCCCCCC
Q 011102 421 ISRAIRYFSKLKEAGFCPT 439 (493)
Q Consensus 421 ~~~A~~~~~~m~~~g~~p~ 439 (493)
..+|.++++.+...|..|-
T Consensus 215 ~~~A~~~l~~L~~~g~~p~ 233 (326)
T PRK07452 215 TGKALALLDDLLDANEPAL 233 (326)
T ss_pred HHHHHHHHHHHHHCCCcHH
Confidence 8888888888887776543
No 452
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=21.46 E-value=5e+02 Score=25.74 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=35.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhcCCCCHHHHHH
Q 011102 271 KGFVKGGNLKLAWKLLMVAKDGGRML-DPSIYAKLILELGKNPDKYMLVMT 320 (493)
Q Consensus 271 ~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~~~~~~~a~~ 320 (493)
+-|.+.|.+++|+..|..-.. +.| ++++|..--.+|.+. .++..|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~-K~FA~AE~ 152 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQ-KSFAQAEE 152 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHH-HHHHHHHH
Confidence 457889999999999987655 346 888888877888887 66665543
No 453
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.02 E-value=1.2e+03 Score=26.34 Aligned_cols=183 Identities=15% Similarity=0.185 Sum_probs=105.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhhcCC-CC-CCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCCCHHHHHH-
Q 011102 301 YAKLILELGKNPDKYMLVMTLLDELGQRDD-LN-LSQQDCTAIMKVGIRLQKF--GVVESLFHWFTHSGRDPTVVMYTT- 375 (493)
Q Consensus 301 ~~~li~~~~~~~~~~~~a~~l~~~m~~~~g-~~-p~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~ty~~- 375 (493)
|..|+.-|... |.+++|+++|.+...... .. --...+--++.-+.+.+.- +-.++.-++..+..-.-....++.
T Consensus 507 y~~Li~LY~~k-g~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 507 YRELIELYATK-GMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred HHHHHHHHHhc-cchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 78899999999 999999999999977421 00 0111233366666666654 555555555443311111111111
Q ss_pred -----------HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--------HHHHHHH-----HHHH
Q 011102 376 -----------LIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALND--------ISRAIRY-----FSKL 431 (493)
Q Consensus 376 -----------li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~--------~~~A~~~-----~~~m 431 (493)
-+-.|......+-+...++.+....-.++..-.+.++.-|+..=+ .++|.+. ...+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 234566667777788888888877667788888888888775322 2233333 1122
Q ss_pred H--HCCCCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------CCCccCHHHHHHHHHh
Q 011102 432 K--EAGFCPTY--------DIYRDMIRIFMASGRLAKCRDVCKEAEM-------------AGFKLDKQTVVELLQI 484 (493)
Q Consensus 432 ~--~~g~~p~~--------~ty~~li~~~~~~g~~~~A~~l~~~m~~-------------~g~~pd~~t~~~Ll~~ 484 (493)
. .....|.. .-|.-.---+.|.|+-++|+.++-.... ....++...|-.+++.
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~ 741 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRI 741 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHH
Confidence 2 23333322 1222222223488999999887655543 1234477777777773
No 454
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=21.01 E-value=3.8e+02 Score=21.74 Aligned_cols=87 Identities=11% Similarity=0.062 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCCchhhhHHH--hhccCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011102 213 ERALQTFCWAQKQPHLFP-DDRLLASTVEVLARHHELKVPFKLEN--FVSLASKGVLEATAKGFVKGGNLKLAWKLLMVA 289 (493)
Q Consensus 213 ~~A~~l~~~m~~~~g~~p-d~~t~~~li~~~~~~g~~~~~~~l~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 289 (493)
++|.+.+...+...|+.| |+..--++...+......+. ..+.. =.++ +..||. |+.+.....+-.+
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~~-~~~~~d~g~e~-~~~t~~---------Ge~~~~~~~ll~q 74 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPSD-EDIKDDSGLEL-NWKTFT---------GEYDDIYEALLKQ 74 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCCC-CccCCCCCeEE-eeeeec---------CchHHHHHHHHHH
Confidence 578888989888889999 76655444444443333211 00000 0001 111221 6666555555544
Q ss_pred HhCCCCCCHHHHHHHHHHHhcC
Q 011102 290 KDGGRMLDPSIYAKLILELGKN 311 (493)
Q Consensus 290 ~~~g~~pd~~t~~~li~~~~~~ 311 (493)
.. |...|...+...+......
T Consensus 75 ~~-g~~~d~~~l~~~~~~Hl~r 95 (113)
T PF08870_consen 75 RY-GPELDDEELPKYFKLHLDR 95 (113)
T ss_pred Hh-CCCCCHHHHHHHHHHHHHH
Confidence 44 5556666666666555544
No 455
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=20.99 E-value=8.4e+02 Score=25.73 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011102 316 MLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSG 365 (493)
Q Consensus 316 ~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 365 (493)
++....++.+....|+..+...+..+.. .-.|.+.+|+.+++++...|
T Consensus 181 ~~I~~~L~~i~~~E~I~~e~~aL~~ia~--~a~Gs~RDalslLDq~i~~~ 228 (515)
T COG2812 181 EEIAKHLAAILDKEGINIEEDALSLIAR--AAEGSLRDALSLLDQAIAFG 228 (515)
T ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHHH--HcCCChhhHHHHHHHHHHcc
Confidence 4555555555544466666555554433 34566777777777777654
No 456
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=20.99 E-value=2.1e+02 Score=23.24 Aligned_cols=35 Identities=9% Similarity=0.013 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 011102 384 KKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALN 419 (493)
Q Consensus 384 g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g 419 (493)
|+.++....+=.+.- |...|...+...+.+....|
T Consensus 62 Ge~~~~~~~ll~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 62 GEYDDIYEALLKQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred CchHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 555544444433333 44445555555555554444
No 457
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=20.91 E-value=3.9e+02 Score=20.45 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=14.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 011102 447 IRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 447 i~~~~~~g~~~~A~~l~~~m~~ 468 (493)
.......|+.++|.+.+++..+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3345567888888887777754
No 458
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=20.62 E-value=4.7e+02 Score=27.46 Aligned_cols=55 Identities=13% Similarity=0.185 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 300 IYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFT 362 (493)
Q Consensus 300 t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 362 (493)
-|-.++..|... ++|++|.++-....+. ..|.++-....+..++.-++..|....
T Consensus 575 py~~iL~e~~ss-sKWeqavRLCrfv~eq-------TMWAtlAa~Av~~~~m~~~EiAYaA~~ 629 (737)
T KOG1524|consen 575 PYPEILHEYLSS-SKWEQAVRLCRFVQEQ-------TMWATLAAVAVRKHQMQISEIAYAAAL 629 (737)
T ss_pred ccHHHHHHHhcc-chHHHHHHHHHhccch-------HHHHHHHHHHHhhccccHHHHHHHHhh
Confidence 355666777777 7888888775544332 345555555555555544444444443
No 459
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.55 E-value=6.4e+02 Score=22.82 Aligned_cols=129 Identities=15% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCchhhhHHHhhccCcHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011102 232 DRLLASTVEVLARHHELKVPFKLENFVSLASKGVL-----EATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLIL 306 (493)
Q Consensus 232 ~~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~ 306 (493)
...|..++.+.- .+..+...++..|..-....+| -.+...+...|++++|..-++.-... |....+..++.
T Consensus 54 S~~Y~~~i~~~~-ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~ 129 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAA 129 (207)
T ss_pred HHHHHHHHHHHh-cCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHH
Q ss_pred -----HHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011102 307 -----ELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP 368 (493)
Q Consensus 307 -----~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 368 (493)
..... |.+++|+.+++..... ++ .......--+.+...|+-++|..-|.+-.+.+-.|
T Consensus 130 lRLArvq~q~-~k~D~AL~~L~t~~~~-~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 130 LRLARVQLQQ-KKADAALKTLDTIKEE-SW--AAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHh-hhHHHHHHHHhccccc-cH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
No 460
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=20.36 E-value=1.8e+02 Score=23.48 Aligned_cols=43 Identities=9% Similarity=0.073 Sum_probs=19.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 011102 340 AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS 382 (493)
Q Consensus 340 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~ 382 (493)
.+++.+...+..-.|.++++.|.+.|...+..|.---|+.+..
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 54 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEE 54 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHH
Confidence 3444444444455555666666555555554443333333333
No 461
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=20.29 E-value=4.4e+02 Score=20.79 Aligned_cols=24 Identities=21% Similarity=-0.010 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHh
Q 011102 302 AKLILELGKNPDKYMLVMTLLDELG 326 (493)
Q Consensus 302 ~~li~~~~~~~~~~~~a~~l~~~m~ 326 (493)
..+|..|... +++++|.+.+.++.
T Consensus 6 ~~~l~ey~~~-~D~~ea~~~l~~L~ 29 (113)
T smart00544 6 FLIIEEYLSS-GDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHhC
Confidence 3456666666 67777777776664
No 462
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=20.22 E-value=1.5e+02 Score=24.04 Aligned_cols=26 Identities=8% Similarity=0.017 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011102 268 ATAKGFVKGGNLKLAWKLLMVAKDGG 293 (493)
Q Consensus 268 ~li~~~~~~g~~~~A~~l~~~m~~~g 293 (493)
++|+.+.++...++|+++++-|.++|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 68888999999999999999999988
Done!