Query 011102
Match_columns 493
No_of_seqs 499 out of 2813
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 20:51:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011102.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011102hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.8E-35 6.1E-40 306.4 25.7 187 264-452 27-222 (501)
2 4g26_A Pentatricopeptide repea 100.0 5.8E-35 2E-39 302.5 25.6 203 280-484 7-219 (501)
3 2xpi_A Anaphase-promoting comp 99.9 2.1E-26 7.2E-31 244.0 25.5 361 97-484 94-559 (597)
4 2xpi_A Anaphase-promoting comp 99.9 7.6E-26 2.6E-30 239.7 26.2 299 174-484 279-593 (597)
5 3spa_A Mtrpol, DNA-directed RN 99.9 1.2E-22 4.2E-27 216.8 11.2 136 334-474 126-265 (1134)
6 3spa_A Mtrpol, DNA-directed RN 99.9 8.1E-22 2.8E-26 210.5 11.9 118 367-484 124-245 (1134)
7 1w3b_A UDP-N-acetylglucosamine 99.8 5.9E-18 2E-22 169.3 24.4 293 175-481 75-379 (388)
8 1w3b_A UDP-N-acetylglucosamine 99.8 3.4E-15 1.1E-19 149.2 37.7 295 177-484 43-348 (388)
9 2y4t_A DNAJ homolog subfamily 99.8 1.6E-15 5.5E-20 154.3 35.6 298 170-481 29-369 (450)
10 2y4t_A DNAJ homolog subfamily 99.7 1.3E-14 4.6E-19 147.4 33.9 273 198-485 28-339 (450)
11 3ieg_A DNAJ homolog subfamily 99.6 8.5E-12 2.9E-16 121.8 38.2 295 175-483 11-348 (359)
12 3hym_B Cell division cycle pro 99.6 6.8E-13 2.3E-17 128.4 29.8 273 198-482 24-311 (330)
13 1fch_A Peroxisomal targeting s 99.6 7.6E-13 2.6E-17 130.5 26.8 276 181-465 39-355 (368)
14 3mkr_A Coatomer subunit epsilo 99.6 1.2E-12 4.2E-17 125.8 26.6 255 203-476 6-269 (291)
15 1b89_A Protein (clathrin heavy 99.6 1.2E-14 4.1E-19 144.8 11.3 248 179-463 15-266 (449)
16 1b89_A Protein (clathrin heavy 99.6 2.9E-14 1E-18 142.0 13.9 219 209-467 16-234 (449)
17 4eqf_A PEX5-related protein; a 99.6 1.1E-12 3.9E-17 129.5 25.4 259 198-465 67-352 (365)
18 3cv0_A Peroxisome targeting si 99.5 2.7E-12 9.3E-17 123.9 27.0 258 198-466 23-312 (327)
19 3hym_B Cell division cycle pro 99.5 8.4E-12 2.9E-16 120.6 28.8 272 176-457 31-322 (330)
20 2gw1_A Mitochondrial precursor 99.5 7.2E-12 2.5E-16 129.1 30.0 197 265-468 239-443 (514)
21 2gw1_A Mitochondrial precursor 99.5 3.1E-12 1.1E-16 131.9 27.1 188 275-469 201-401 (514)
22 3ieg_A DNAJ homolog subfamily 99.5 2.3E-10 7.9E-15 111.5 35.6 270 199-483 6-314 (359)
23 1fch_A Peroxisomal targeting s 99.4 1.1E-11 3.6E-16 122.2 23.1 257 205-469 34-314 (368)
24 2ho1_A Type 4 fimbrial biogene 99.4 4.6E-11 1.6E-15 111.1 25.5 211 263-481 37-248 (252)
25 3fp2_A TPR repeat-containing p 99.4 6.5E-11 2.2E-15 122.8 29.1 282 175-469 33-407 (537)
26 2vq2_A PILW, putative fimbrial 99.4 1.1E-10 3.8E-15 105.9 27.1 214 262-482 7-222 (225)
27 4eqf_A PEX5-related protein; a 99.4 2.2E-11 7.4E-16 120.2 22.0 248 175-430 73-352 (365)
28 3fp2_A TPR repeat-containing p 99.4 2.5E-10 8.6E-15 118.3 31.1 196 266-469 246-491 (537)
29 3mkr_A Coatomer subunit epsilo 99.4 1.1E-10 3.8E-15 112.0 26.3 258 180-461 12-286 (291)
30 3cv0_A Peroxisome targeting si 99.4 3.4E-11 1.2E-15 116.1 22.6 247 176-431 30-312 (327)
31 3uq3_A Heat shock protein STI1 99.4 1.3E-10 4.5E-15 107.9 23.1 235 233-483 6-254 (258)
32 2q7f_A YRRB protein; TPR, prot 99.3 2.8E-10 9.6E-15 104.8 21.6 210 263-481 23-233 (243)
33 2pl2_A Hypothetical conserved 99.3 5.1E-10 1.8E-14 102.3 22.7 198 262-467 4-212 (217)
34 3uq3_A Heat shock protein STI1 99.3 1.1E-09 3.9E-14 101.4 25.4 217 198-433 7-235 (258)
35 1xnf_A Lipoprotein NLPI; TPR, 99.2 1.4E-09 4.7E-14 102.1 22.2 222 208-468 17-243 (275)
36 1ouv_A Conserved hypothetical 99.2 3.2E-08 1.1E-12 93.2 31.4 221 198-470 8-252 (273)
37 3nf1_A KLC 1, kinesin light ch 99.2 4.7E-10 1.6E-14 107.2 18.9 203 265-468 29-306 (311)
38 2ho1_A Type 4 fimbrial biogene 99.2 1.2E-08 3.9E-13 94.7 27.1 200 198-435 39-239 (252)
39 2vq2_A PILW, putative fimbrial 99.2 9.2E-09 3.2E-13 93.1 25.3 200 198-433 10-210 (225)
40 2ooe_A Cleavage stimulation fa 99.2 1.3E-07 4.3E-12 98.5 36.4 163 317-485 304-473 (530)
41 1xnf_A Lipoprotein NLPI; TPR, 99.2 1.5E-09 5.2E-14 101.8 18.9 242 178-463 16-269 (275)
42 1xi4_A Clathrin heavy chain; a 99.2 2.2E-08 7.7E-13 111.0 30.4 247 178-467 1060-1307(1630)
43 1ouv_A Conserved hypothetical 99.2 5.8E-08 2E-12 91.4 29.8 193 262-471 5-217 (273)
44 3u4t_A TPR repeat-containing p 99.1 2.7E-08 9.2E-13 93.2 26.5 237 201-477 8-256 (272)
45 2xm6_A Protein corresponding t 99.1 1.3E-06 4.5E-11 89.7 40.2 145 313-470 273-433 (490)
46 2xm6_A Protein corresponding t 99.1 7.9E-07 2.7E-11 91.4 37.7 271 177-470 89-397 (490)
47 4a1s_A PINS, partner of inscut 99.1 6.3E-09 2.2E-13 104.0 20.0 265 202-469 54-372 (411)
48 2q7f_A YRRB protein; TPR, prot 99.1 1.9E-08 6.6E-13 92.3 21.8 199 198-435 25-223 (243)
49 3ro2_A PINS homolog, G-protein 99.1 7.7E-09 2.6E-13 99.3 19.5 263 204-469 13-332 (338)
50 3sf4_A G-protein-signaling mod 99.1 1.6E-08 5.4E-13 100.4 21.7 264 204-468 17-335 (406)
51 1xi4_A Clathrin heavy chain; a 99.0 8.8E-08 3E-12 106.4 28.7 256 175-461 1113-1376(1630)
52 3as5_A MAMA; tetratricopeptide 99.0 3.8E-08 1.3E-12 85.8 21.1 162 301-468 11-172 (186)
53 2ond_A Cleavage stimulation fa 99.0 1.5E-07 5.1E-12 90.6 27.0 184 279-469 80-270 (308)
54 2pl2_A Hypothetical conserved 99.0 7.4E-08 2.5E-12 87.8 22.8 179 295-483 2-193 (217)
55 3u4t_A TPR repeat-containing p 99.0 1.2E-07 4.2E-12 88.6 24.7 236 175-446 11-261 (272)
56 3nf1_A KLC 1, kinesin light ch 99.0 2.4E-08 8.2E-13 95.2 19.9 234 198-433 29-306 (311)
57 3edt_B KLC 2, kinesin light ch 99.0 6.6E-09 2.3E-13 97.4 15.6 204 263-468 43-280 (283)
58 3vtx_A MAMA; tetratricopeptide 99.0 1.3E-07 4.5E-12 83.1 23.2 165 298-468 5-169 (184)
59 3as5_A MAMA; tetratricopeptide 99.0 5.8E-08 2E-12 84.6 20.5 164 264-433 9-172 (186)
60 3vtx_A MAMA; tetratricopeptide 99.0 2.8E-07 9.4E-12 81.0 23.3 167 262-434 4-170 (184)
61 2h6f_A Protein farnesyltransfe 98.9 2.2E-07 7.4E-12 92.5 24.9 226 199-466 100-344 (382)
62 3sf4_A G-protein-signaling mod 98.9 4.4E-08 1.5E-12 97.1 19.2 281 175-456 17-363 (406)
63 4a1s_A PINS, partner of inscut 98.9 4.1E-08 1.4E-12 98.0 17.6 256 175-433 56-371 (411)
64 1hz4_A MALT regulatory protein 98.9 1.3E-06 4.5E-11 86.0 27.9 262 205-468 23-321 (373)
65 3ro2_A PINS homolog, G-protein 98.9 6.4E-08 2.2E-12 92.8 17.6 258 175-433 13-331 (338)
66 2fo7_A Synthetic consensus TPR 98.9 2.2E-07 7.4E-12 76.1 17.9 129 337-468 3-131 (136)
67 2ond_A Cleavage stimulation fa 98.9 2.9E-06 1E-10 81.4 28.6 214 213-434 33-270 (308)
68 4abn_A Tetratricopeptide repea 98.8 6.3E-08 2.2E-12 99.4 17.4 198 262-466 101-318 (474)
69 2h6f_A Protein farnesyltransfe 98.8 5.2E-07 1.8E-11 89.7 23.1 210 263-483 97-317 (382)
70 3edt_B KLC 2, kinesin light ch 98.8 7.4E-08 2.5E-12 90.1 15.2 224 208-433 13-280 (283)
71 4g1t_A Interferon-induced prot 98.8 1.2E-06 4.2E-11 89.0 24.8 293 176-478 103-469 (472)
72 4abn_A Tetratricopeptide repea 98.8 6.5E-07 2.2E-11 91.8 22.1 184 279-469 84-287 (474)
73 3ulq_A Response regulator aspa 98.8 9.2E-07 3.1E-11 87.6 22.5 234 204-468 111-367 (383)
74 2fo7_A Synthetic consensus TPR 98.7 6.1E-07 2.1E-11 73.3 17.1 96 335-432 35-130 (136)
75 2ooe_A Cleavage stimulation fa 98.7 2.9E-06 1E-10 88.0 24.5 200 262-468 271-491 (530)
76 3mv2_B Coatomer subunit epsilo 98.7 9.5E-06 3.2E-10 77.3 25.4 178 282-468 85-281 (310)
77 4gyw_A UDP-N-acetylglucosamine 98.7 1.3E-06 4.4E-11 94.0 21.7 159 301-466 12-171 (723)
78 3q15_A PSP28, response regulat 98.7 2.9E-06 9.8E-11 84.0 22.3 233 205-468 110-364 (378)
79 4g1t_A Interferon-induced prot 98.7 1.2E-05 4.1E-10 81.6 27.2 292 178-476 62-406 (472)
80 4i17_A Hypothetical protein; T 98.6 6.1E-06 2.1E-10 75.1 21.7 205 262-482 6-220 (228)
81 4gyw_A UDP-N-acetylglucosamine 98.6 2.1E-06 7.2E-11 92.3 21.3 162 263-432 9-172 (723)
82 1qqe_A Vesicular transport pro 98.6 2.4E-06 8.3E-11 81.4 19.5 200 265-467 39-267 (292)
83 3ulq_A Response regulator aspa 98.6 3.4E-06 1.2E-10 83.5 20.9 204 269-476 109-339 (383)
84 4i17_A Hypothetical protein; T 98.6 1.3E-05 4.5E-10 72.8 22.1 188 231-435 6-210 (228)
85 1hz4_A MALT regulatory protein 98.5 1.5E-05 5.1E-10 78.3 23.0 254 178-432 25-320 (373)
86 3e4b_A ALGK; tetratricopeptide 98.5 2.4E-05 8.3E-10 79.5 23.2 338 96-472 12-390 (452)
87 1qqe_A Vesicular transport pro 98.4 8.3E-06 2.8E-10 77.7 17.8 175 278-468 32-227 (292)
88 3q15_A PSP28, response regulat 98.4 2.7E-05 9.3E-10 76.8 21.7 224 177-432 111-363 (378)
89 3u3w_A Transcriptional activat 98.4 4.5E-05 1.5E-09 72.4 21.4 212 218-467 33-264 (293)
90 3qky_A Outer membrane assembly 98.3 3.8E-05 1.3E-09 71.4 19.6 61 409-469 152-224 (261)
91 3qky_A Outer membrane assembly 98.3 3.6E-05 1.2E-09 71.5 19.2 167 263-434 15-224 (261)
92 3u3w_A Transcriptional activat 98.3 0.00014 4.9E-09 68.8 23.7 156 237-395 80-262 (293)
93 3rjv_A Putative SEL1 repeat pr 98.3 6.6E-05 2.3E-09 67.7 20.3 178 281-472 4-200 (212)
94 3mv2_B Coatomer subunit epsilo 98.3 3.5E-05 1.2E-09 73.3 18.5 166 262-435 99-283 (310)
95 2ifu_A Gamma-SNAP; membrane fu 98.3 2.3E-05 7.9E-10 75.1 17.4 166 265-432 38-222 (307)
96 2vsy_A XCC0866; transferase, g 98.3 2.6E-05 8.9E-10 81.6 19.0 154 276-435 2-158 (568)
97 3e4b_A ALGK; tetratricopeptide 98.3 0.00039 1.3E-08 70.5 26.6 267 182-471 53-353 (452)
98 3urz_A Uncharacterized protein 98.2 6E-05 2.1E-09 67.7 18.0 136 340-484 59-199 (208)
99 2yhc_A BAMD, UPF0169 lipoprote 98.2 0.00016 5.5E-09 65.6 20.7 183 265-470 6-214 (225)
100 2ifu_A Gamma-SNAP; membrane fu 98.2 2.5E-05 8.4E-10 74.9 15.7 187 209-397 4-222 (307)
101 1hh8_A P67PHOX, NCF-2, neutrop 98.2 6.6E-05 2.2E-09 67.1 17.7 126 302-434 10-150 (213)
102 2qfc_A PLCR protein; TPR, HTH, 98.2 0.00012 4.1E-09 69.4 20.2 166 264-430 76-262 (293)
103 1na0_A Designed protein CTPR3; 98.2 0.00012 4.1E-09 58.5 16.6 95 336-432 10-104 (125)
104 2yhc_A BAMD, UPF0169 lipoprote 98.2 0.00017 5.9E-09 65.4 19.0 176 232-435 4-214 (225)
105 2qfc_A PLCR protein; TPR, HTH, 98.1 0.00016 5.4E-09 68.6 19.5 167 300-467 77-264 (293)
106 2vsy_A XCC0866; transferase, g 98.1 6.6E-05 2.3E-09 78.5 18.2 134 262-400 22-158 (568)
107 1a17_A Serine/threonine protei 98.1 0.00015 5.1E-09 61.6 17.4 128 337-467 15-144 (166)
108 3gw4_A Uncharacterized protein 98.1 3.4E-05 1.2E-09 68.2 13.6 154 313-468 6-175 (203)
109 1hh8_A P67PHOX, NCF-2, neutrop 98.1 0.00014 4.8E-09 64.9 17.8 129 265-400 8-151 (213)
110 3urz_A Uncharacterized protein 98.1 0.00022 7.4E-09 64.0 18.9 167 269-447 10-197 (208)
111 2r5s_A Uncharacterized protein 98.1 4.1E-05 1.4E-09 66.7 13.6 152 308-466 16-170 (176)
112 3qou_A Protein YBBN; thioredox 98.1 8.8E-05 3E-09 70.3 16.9 154 306-465 125-280 (287)
113 2pzi_A Probable serine/threoni 98.1 2.5E-05 8.6E-10 83.8 14.4 173 274-455 402-583 (681)
114 2r5s_A Uncharacterized protein 98.1 5.5E-05 1.9E-09 65.8 14.1 159 267-432 10-171 (176)
115 4e6h_A MRNA 3'-END-processing 98.1 0.0034 1.2E-07 66.7 30.2 168 313-484 357-550 (679)
116 3qou_A Protein YBBN; thioredox 98.0 0.00017 6E-09 68.3 16.9 162 264-432 118-282 (287)
117 1na0_A Designed protein CTPR3; 98.0 0.00033 1.1E-08 55.8 16.2 96 299-398 10-105 (125)
118 3gw4_A Uncharacterized protein 98.0 5.9E-05 2E-09 66.6 12.6 157 274-432 3-174 (203)
119 3rjv_A Putative SEL1 repeat pr 98.0 0.001 3.4E-08 59.8 20.6 166 261-436 16-199 (212)
120 2vyi_A SGTA protein; chaperone 98.0 0.0003 1E-08 56.6 15.3 117 336-455 13-129 (131)
121 2lni_A Stress-induced-phosphop 97.9 0.00029 9.8E-09 57.1 14.8 117 334-453 15-131 (133)
122 1a17_A Serine/threonine protei 97.9 0.00035 1.2E-08 59.2 15.8 121 306-431 21-143 (166)
123 4e6h_A MRNA 3'-END-processing 97.9 0.00034 1.2E-08 74.4 18.6 203 262-469 342-570 (679)
124 2pzi_A Probable serine/threoni 97.9 0.00016 5.3E-09 77.5 14.8 157 309-475 402-567 (681)
125 1p5q_A FKBP52, FK506-binding p 97.8 0.00062 2.1E-08 66.1 17.5 132 297-431 146-291 (336)
126 4ga2_A E3 SUMO-protein ligase 97.8 0.0002 7E-09 60.5 12.1 108 313-426 11-120 (150)
127 2dba_A Smooth muscle cell asso 97.8 0.00084 2.9E-08 55.5 15.7 97 369-468 27-127 (148)
128 2e2e_A Formate-dependent nitri 97.8 0.00021 7.2E-09 61.8 12.2 116 313-432 24-142 (177)
129 4b4t_Q 26S proteasome regulato 97.8 0.001 3.6E-08 66.2 18.9 194 273-467 14-243 (434)
130 2vyi_A SGTA protein; chaperone 97.8 0.00076 2.6E-08 54.1 14.7 91 304-398 18-108 (131)
131 4f3v_A ESX-1 secretion system 97.8 0.00072 2.5E-08 63.4 15.6 196 275-483 18-249 (282)
132 1elr_A TPR2A-domain of HOP; HO 97.7 0.0012 4.1E-08 53.0 14.9 95 373-468 7-107 (131)
133 4gco_A Protein STI-1; structur 97.7 0.0012 4.1E-08 53.9 14.8 94 373-468 16-109 (126)
134 3ro3_A PINS homolog, G-protein 97.7 0.00033 1.1E-08 58.6 11.7 132 337-468 11-157 (164)
135 3upv_A Heat shock protein STI1 97.7 0.0014 4.6E-08 53.0 14.8 95 372-468 6-100 (126)
136 2lni_A Stress-induced-phosphop 97.7 0.00094 3.2E-08 53.9 13.8 94 265-362 18-111 (133)
137 1elr_A TPR2A-domain of HOP; HO 97.7 0.00084 2.9E-08 53.9 13.4 110 336-448 5-120 (131)
138 2e2e_A Formate-dependent nitri 97.7 0.0004 1.4E-08 60.1 12.1 118 348-468 23-143 (177)
139 1p5q_A FKBP52, FK506-binding p 97.7 0.00099 3.4E-08 64.6 16.1 131 263-397 147-292 (336)
140 4b4t_Q 26S proteasome regulato 97.7 0.0013 4.4E-08 65.6 17.2 213 204-432 12-243 (434)
141 4f3v_A ESX-1 secretion system 97.6 0.0022 7.7E-08 60.1 17.3 130 265-399 104-237 (282)
142 1elw_A TPR1-domain of HOP; HOP 97.6 0.0026 8.9E-08 49.8 15.5 96 371-468 5-100 (118)
143 4gco_A Protein STI-1; structur 97.6 0.0024 8.1E-08 52.1 15.5 96 337-434 15-110 (126)
144 2c2l_A CHIP, carboxy terminus 97.6 0.0029 1E-07 59.5 17.9 191 263-468 4-198 (281)
145 1elw_A TPR1-domain of HOP; HOP 97.6 0.0028 9.7E-08 49.6 15.3 97 336-434 5-101 (118)
146 3q49_B STIP1 homology and U bo 97.6 0.0034 1.2E-07 51.2 16.2 97 334-432 8-104 (137)
147 3dra_A Protein farnesyltransfe 97.6 0.025 8.6E-07 53.8 24.2 186 278-469 84-287 (306)
148 2fbn_A 70 kDa peptidylprolyl i 97.6 0.0017 5.8E-08 57.3 15.1 131 337-469 40-186 (198)
149 4gcn_A Protein STI-1; structur 97.6 0.0017 5.7E-08 53.0 13.6 108 373-483 11-124 (127)
150 3gyz_A Chaperone protein IPGC; 97.6 0.0012 3.9E-08 56.1 12.8 95 337-433 38-132 (151)
151 3q49_B STIP1 homology and U bo 97.6 0.0025 8.5E-08 52.0 14.6 100 367-468 6-105 (137)
152 4ga2_A E3 SUMO-protein ligase 97.5 0.0003 1E-08 59.5 9.0 139 273-419 7-148 (150)
153 3sz7_A HSC70 cochaperone (SGT) 97.5 0.0035 1.2E-07 53.3 15.2 97 335-433 11-107 (164)
154 2dba_A Smooth muscle cell asso 97.5 0.0045 1.5E-07 50.9 15.4 98 334-434 27-128 (148)
155 2kck_A TPR repeat; tetratricop 97.5 0.0012 4E-08 51.4 11.1 98 371-469 7-106 (112)
156 2vgx_A Chaperone SYCD; alterna 97.5 0.0019 6.5E-08 54.3 13.0 95 336-432 22-116 (148)
157 2fbn_A 70 kDa peptidylprolyl i 97.5 0.002 6.9E-08 56.8 13.9 123 264-390 39-176 (198)
158 3gyz_A Chaperone protein IPGC; 97.5 0.0018 6.1E-08 54.9 12.8 92 303-398 41-132 (151)
159 3sz7_A HSC70 cochaperone (SGT) 97.5 0.0022 7.5E-08 54.6 13.6 99 369-469 10-108 (164)
160 3dra_A Protein farnesyltransfe 97.4 0.036 1.2E-06 52.7 23.1 165 277-446 124-299 (306)
161 3ro3_A PINS homolog, G-protein 97.4 0.00079 2.7E-08 56.2 10.4 60 265-325 11-75 (164)
162 2xcb_A PCRH, regulatory protei 97.4 0.0024 8.2E-08 53.0 13.1 95 337-433 20-114 (142)
163 2kck_A TPR repeat; tetratricop 97.4 0.0021 7.2E-08 49.9 11.9 89 343-432 14-104 (112)
164 2vgx_A Chaperone SYCD; alterna 97.4 0.0049 1.7E-07 51.7 14.6 90 304-397 27-116 (148)
165 3upv_A Heat shock protein STI1 97.4 0.007 2.4E-07 48.6 14.8 88 343-432 12-99 (126)
166 4gcn_A Protein STI-1; structur 97.3 0.0056 1.9E-07 49.8 14.0 105 337-444 10-120 (127)
167 2xcb_A PCRH, regulatory protei 97.3 0.0037 1.3E-07 51.8 13.1 87 307-397 27-113 (142)
168 2uy1_A Cleavage stimulation fa 97.3 0.095 3.3E-06 53.4 25.3 142 317-466 197-380 (493)
169 2xev_A YBGF; tetratricopeptide 97.1 0.0099 3.4E-07 47.7 13.4 59 408-468 42-104 (129)
170 3k9i_A BH0479 protein; putativ 97.1 0.0009 3.1E-08 53.6 6.8 83 349-432 4-88 (117)
171 1kt0_A FKBP51, 51 kDa FK506-bi 97.1 0.0063 2.2E-07 61.6 14.5 124 298-425 268-405 (457)
172 2xev_A YBGF; tetratricopeptide 97.1 0.013 4.4E-07 47.0 13.8 90 342-434 9-105 (129)
173 1wao_1 Serine/threonine protei 97.1 0.003 1E-07 64.4 11.7 83 313-398 20-102 (477)
174 1hxi_A PEX5, peroxisome target 97.1 0.0062 2.1E-07 49.1 11.4 88 343-432 25-112 (121)
175 3n71_A Histone lysine methyltr 97.1 0.0038 1.3E-07 63.7 12.2 124 345-468 319-463 (490)
176 3k9i_A BH0479 protein; putativ 97.0 0.0013 4.4E-08 52.6 7.0 87 382-469 2-90 (117)
177 3q7a_A Farnesyltransferase alp 97.0 0.27 9.2E-06 47.4 26.5 201 278-483 104-345 (349)
178 3rkv_A Putative peptidylprolyl 97.0 0.022 7.4E-07 48.1 14.7 62 406-468 64-125 (162)
179 1hxi_A PEX5, peroxisome target 96.9 0.011 3.8E-07 47.5 11.8 93 374-468 21-113 (121)
180 2c2l_A CHIP, carboxy terminus 96.9 0.017 5.7E-07 54.2 14.5 98 334-433 3-100 (281)
181 1kt0_A FKBP51, 51 kDa FK506-bi 96.9 0.011 3.7E-07 59.9 13.6 129 263-398 268-414 (457)
182 1wao_1 Serine/threonine protei 96.8 0.0056 1.9E-07 62.4 11.4 122 269-395 12-135 (477)
183 1ihg_A Cyclophilin 40; ppiase 96.8 0.015 5E-07 57.1 13.8 90 370-461 273-362 (370)
184 3n71_A Histone lysine methyltr 96.8 0.0075 2.6E-07 61.5 11.8 125 308-433 319-463 (490)
185 1klx_A Cysteine rich protein B 96.8 0.025 8.4E-07 46.7 12.9 113 349-472 9-129 (138)
186 3mkq_A Coatomer beta'-subunit; 96.6 0.086 3E-06 56.9 19.2 150 179-361 611-762 (814)
187 2uy1_A Cleavage stimulation fa 96.5 0.21 7.2E-06 50.8 20.1 187 262-468 212-412 (493)
188 1ihg_A Cyclophilin 40; ppiase 96.4 0.029 1E-06 55.0 12.9 137 265-426 225-362 (370)
189 2if4_A ATFKBP42; FKBP-like, al 96.4 0.0091 3.1E-07 57.8 9.1 147 298-468 179-327 (338)
190 3rkv_A Putative peptidylprolyl 96.3 0.064 2.2E-06 45.1 12.9 96 338-434 14-126 (162)
191 2hr2_A Hypothetical protein; a 96.3 0.17 5.8E-06 42.8 14.8 77 407-483 59-150 (159)
192 2l6j_A TPR repeat-containing p 96.2 0.0059 2E-07 47.5 5.1 63 370-433 4-66 (111)
193 1klx_A Cysteine rich protein B 96.2 0.087 3E-06 43.3 12.6 111 277-400 9-127 (138)
194 2if4_A ATFKBP42; FKBP-like, al 96.1 0.015 5.2E-07 56.2 8.4 146 264-433 180-327 (338)
195 2kat_A Uncharacterized protein 96.0 0.041 1.4E-06 43.2 9.5 62 370-432 19-80 (115)
196 3mkq_A Coatomer beta'-subunit; 96.0 0.11 3.7E-06 56.1 15.7 98 274-397 610-708 (814)
197 2hr2_A Hypothetical protein; a 95.9 0.3 1E-05 41.3 14.9 108 338-447 14-149 (159)
198 2l6j_A TPR repeat-containing p 95.9 0.0079 2.7E-07 46.7 4.6 23 373-395 41-63 (111)
199 3dss_A Geranylgeranyl transfer 95.9 1.3 4.5E-05 42.3 21.5 192 275-475 41-271 (331)
200 1na3_A Designed protein CTPR2; 95.8 0.12 4E-06 38.1 11.0 25 408-432 46-70 (91)
201 3q7a_A Farnesyltransferase alp 95.8 1.4 4.9E-05 42.3 21.0 184 265-456 56-258 (349)
202 1dce_A Protein (RAB geranylger 95.7 0.51 1.7E-05 48.9 18.9 129 351-483 89-234 (567)
203 2kat_A Uncharacterized protein 95.7 0.12 4.2E-06 40.4 11.1 79 317-398 3-81 (115)
204 1wy6_A Hypothetical protein ST 95.5 0.78 2.7E-05 37.3 15.2 138 276-437 20-157 (172)
205 1na3_A Designed protein CTPR2; 95.5 0.19 6.5E-06 36.9 11.1 64 335-399 9-72 (91)
206 3ma5_A Tetratricopeptide repea 95.4 0.082 2.8E-06 40.5 8.9 62 335-397 7-68 (100)
207 3ma5_A Tetratricopeptide repea 95.4 0.1 3.6E-06 39.9 9.3 63 369-432 6-68 (100)
208 3qww_A SET and MYND domain-con 95.3 0.13 4.5E-06 51.3 12.1 87 382-468 310-410 (433)
209 3qwp_A SET and MYND domain-con 95.3 0.098 3.4E-06 52.3 11.1 92 377-468 294-399 (429)
210 1dce_A Protein (RAB geranylger 95.2 0.77 2.6E-05 47.5 18.0 175 275-457 41-243 (567)
211 1wy6_A Hypothetical protein ST 95.1 0.82 2.8E-05 37.2 13.5 137 313-472 21-157 (172)
212 3qwp_A SET and MYND domain-con 94.9 0.092 3.1E-06 52.5 9.5 91 342-432 294-398 (429)
213 3qww_A SET and MYND domain-con 94.8 0.16 5.6E-06 50.7 11.1 85 348-432 311-409 (433)
214 3dss_A Geranylgeranyl transfer 94.6 3.3 0.00011 39.5 22.7 181 279-468 90-303 (331)
215 1zu2_A Mitochondrial import re 94.1 0.14 4.9E-06 43.2 7.5 86 345-433 12-119 (158)
216 3mkq_B Coatomer subunit alpha; 93.9 2.2 7.6E-05 36.5 14.7 128 307-466 14-141 (177)
217 3ly7_A Transcriptional activat 93.6 3.3 0.00011 40.0 17.0 74 402-479 274-347 (372)
218 1pc2_A Mitochondria fission pr 93.3 1 3.5E-05 37.6 11.3 79 388-468 16-99 (152)
219 2kc7_A BFR218_protein; tetratr 93.3 0.51 1.7E-05 35.3 9.0 54 344-398 9-63 (99)
220 1zu2_A Mitochondrial import re 93.0 0.3 1E-05 41.1 7.7 95 314-414 17-133 (158)
221 3ly7_A Transcriptional activat 92.2 2.7 9.3E-05 40.6 14.1 74 332-409 274-347 (372)
222 2kc7_A BFR218_protein; tetratr 91.4 0.76 2.6E-05 34.3 7.8 57 377-434 7-64 (99)
223 3mkq_B Coatomer subunit alpha; 90.4 7.7 0.00026 33.1 14.2 98 274-394 16-113 (177)
224 4b4t_P 26S proteasome regulato 90.0 7.8 0.00027 38.5 15.7 230 198-431 58-321 (445)
225 2v5f_A Prolyl 4-hydroxylase su 89.6 2.3 8E-05 32.5 9.2 65 369-433 4-74 (104)
226 2v5f_A Prolyl 4-hydroxylase su 89.0 2.7 9.3E-05 32.1 9.2 71 333-405 3-79 (104)
227 1pc2_A Mitochondria fission pr 88.0 4.4 0.00015 33.7 10.1 80 352-433 15-99 (152)
228 4b4t_P 26S proteasome regulato 87.9 16 0.00054 36.3 16.2 94 339-432 141-245 (445)
229 1v54_E Cytochrome C oxidase po 86.3 5.4 0.00019 30.5 8.7 62 385-448 25-87 (109)
230 3bee_A Putative YFRE protein; 86.3 5.6 0.00019 29.8 9.2 63 369-433 5-71 (93)
231 3u64_A Protein TP_0956; tetrat 84.8 7.6 0.00026 36.1 10.9 88 352-441 180-278 (301)
232 2ff4_A Probable regulatory pro 84.5 4.5 0.00015 39.5 10.0 57 374-431 175-231 (388)
233 3u64_A Protein TP_0956; tetrat 84.3 5.1 0.00018 37.2 9.5 93 316-411 180-283 (301)
234 4gns_B Protein CSD3, chitin bi 83.9 12 0.00043 39.7 13.6 52 415-467 347-398 (754)
235 2ff4_A Probable regulatory pro 83.2 6 0.0002 38.6 10.3 125 262-407 111-247 (388)
236 1nzn_A CGI-135 protein, fissio 81.7 5.6 0.00019 31.9 7.6 23 446-468 80-102 (126)
237 3bee_A Putative YFRE protein; 79.4 17 0.00058 27.0 11.1 48 351-399 25-72 (93)
238 2y69_E Cytochrome C oxidase su 78.7 15 0.00053 29.6 9.1 62 385-448 68-130 (152)
239 2y69_E Cytochrome C oxidase su 78.4 8.3 0.00028 31.2 7.4 64 420-484 68-131 (152)
240 3txn_A 26S proteasome regulato 77.8 53 0.0018 31.8 16.0 166 265-431 21-207 (394)
241 3eiq_C Programmed cell death p 76.2 4.4 0.00015 39.0 6.4 214 265-483 56-296 (358)
242 4h7y_A Dual specificity protei 76.1 25 0.00085 29.1 9.9 54 349-403 74-127 (161)
243 1v54_E Cytochrome C oxidase po 74.6 26 0.0009 26.7 10.9 50 314-364 25-74 (109)
244 1nzn_A CGI-135 protein, fissio 72.7 27 0.00091 27.9 9.2 83 350-434 16-103 (126)
245 1k1a_A B-cell lymphoma 3-encod 72.3 3.2 0.00011 36.7 4.3 187 269-474 12-210 (241)
246 4gns_B Protein CSD3, chitin bi 70.8 24 0.00082 37.5 11.0 128 265-396 250-397 (754)
247 4h7y_A Dual specificity protei 70.6 39 0.0013 27.9 9.8 57 419-476 74-130 (161)
248 2p58_C Putative type III secre 69.8 24 0.00084 26.8 7.7 51 379-435 49-99 (116)
249 4fhn_B Nucleoporin NUP120; pro 67.2 50 0.0017 37.1 13.4 189 269-467 818-1048(1139)
250 2p58_C Putative type III secre 66.5 19 0.00066 27.4 6.5 79 313-400 21-99 (116)
251 2uwj_G Type III export protein 66.0 23 0.0008 26.9 6.9 51 379-435 48-98 (115)
252 4b4t_R RPN7, 26S proteasome re 65.1 57 0.002 31.9 12.0 58 339-396 135-194 (429)
253 2uwj_G Type III export protein 63.3 19 0.00064 27.4 5.9 86 313-408 20-105 (115)
254 4b4t_R RPN7, 26S proteasome re 60.9 58 0.002 31.9 11.2 96 371-468 132-236 (429)
255 1wdy_A 2-5A-dependent ribonucl 59.8 7 0.00024 35.2 4.0 214 237-474 7-247 (285)
256 4fhn_B Nucleoporin NUP120; pro 59.7 1.7E+02 0.0059 32.7 16.0 182 268-453 847-1079(1139)
257 2nsz_A Programmed cell death p 58.9 43 0.0015 26.7 8.1 65 372-437 9-75 (129)
258 2wpv_A GET4, UPF0363 protein Y 58.5 1.2E+02 0.004 28.3 23.2 133 281-432 75-215 (312)
259 2zu6_B Programmed cell death p 58.0 22 0.00076 33.2 7.0 70 407-477 168-239 (307)
260 2wpv_A GET4, UPF0363 protein Y 56.6 1.3E+02 0.0043 28.1 14.2 162 278-460 12-188 (312)
261 3aji_A 26S proteasome non-ATPa 54.0 11 0.00036 33.0 4.0 18 270-287 10-27 (231)
262 3e3v_A Regulatory protein RECX 50.5 1E+02 0.0034 26.0 9.5 113 352-467 50-164 (177)
263 2hyv_A Annexin A2; calcium-bin 50.5 1.6E+02 0.0054 27.3 11.9 192 265-468 63-281 (308)
264 2ion_A PDCD4, programmed cell 50.3 40 0.0014 27.7 6.7 67 372-439 11-79 (152)
265 1zbp_A Hypothetical protein VP 50.2 56 0.0019 29.8 8.1 54 378-432 5-58 (273)
266 3ffl_A Anaphase-promoting comp 49.6 62 0.0021 27.1 7.7 69 292-361 12-89 (167)
267 3o48_A Mitochondria fission 1 47.8 1.1E+02 0.0036 24.6 9.7 73 403-477 38-113 (134)
268 3ltm_A Alpha-REP4; protein eng 47.4 1.3E+02 0.0044 25.4 17.9 17 334-350 125-141 (211)
269 1k1a_A B-cell lymphoma 3-encod 45.4 15 0.00053 32.0 3.7 157 304-474 12-177 (241)
270 3ffl_A Anaphase-promoting comp 45.0 90 0.0031 26.1 8.0 127 330-469 13-151 (167)
271 2d2s_A Exocyst complex compone 44.7 1.3E+02 0.0044 26.7 9.6 90 340-432 23-118 (235)
272 3jxi_A Vanilloid receptor-rela 43.5 4 0.00014 36.7 -0.6 191 269-468 8-250 (260)
273 2ion_A PDCD4, programmed cell 43.5 1.3E+02 0.0046 24.5 9.9 67 337-404 11-79 (152)
274 1zbp_A Hypothetical protein VP 43.2 71 0.0024 29.1 7.6 116 342-468 4-128 (273)
275 3esl_A Checkpoint serine/threo 41.6 1.3E+02 0.0046 25.9 8.8 54 385-438 94-148 (202)
276 3t8k_A Uncharacterized protein 40.4 25 0.00085 29.8 4.1 13 274-286 14-26 (186)
277 3twr_A Tankyrase-2; ankyrin re 40.0 24 0.00082 28.7 3.9 10 313-322 19-28 (165)
278 3t8k_A Uncharacterized protein 39.7 51 0.0017 27.8 6.0 27 343-369 43-69 (186)
279 3lpz_A GET4 (YOR164C homolog); 39.2 2.5E+02 0.0085 26.4 22.5 133 281-432 77-214 (336)
280 1axn_A Annexin III; annexin fa 38.7 2.5E+02 0.0084 26.2 15.2 191 266-468 80-296 (323)
281 1s6c_A KV4 potassium channel-i 38.5 1.6E+02 0.0055 24.0 9.4 66 296-361 36-101 (183)
282 2d2s_A Exocyst complex compone 37.8 1.3E+02 0.0043 26.7 8.5 91 304-398 24-119 (235)
283 3kea_A K1L; tropism, ANK repea 37.4 21 0.00073 32.5 3.4 181 239-442 35-225 (285)
284 2zhj_A Annexin A4; zynogen gra 36.7 2.6E+02 0.009 25.9 15.2 192 265-467 78-294 (322)
285 3l6a_A Eukaryotic translation 36.2 1.1E+02 0.0038 29.2 8.3 26 300-326 14-39 (364)
286 2nsz_A Programmed cell death p 35.8 1.6E+02 0.0055 23.2 11.2 66 338-404 10-77 (129)
287 1dm5_A Annexin XII E105K mutan 35.5 2.7E+02 0.0093 25.7 15.7 191 265-467 73-289 (315)
288 4a1g_A Mitotic checkpoint seri 35.4 86 0.0029 25.8 6.3 53 423-475 83-136 (152)
289 3d5l_A Regulatory protein RECX 35.2 2.2E+02 0.0075 24.8 9.6 53 351-404 92-144 (221)
290 3eu9_A Huntingtin-interacting 35.2 16 0.00056 31.7 2.2 16 450-465 217-232 (240)
291 1wdy_A 2-5A-dependent ribonucl 35.2 17 0.00059 32.5 2.3 247 200-474 6-280 (285)
292 1qsa_A Protein (soluble lytic 34.9 3.9E+02 0.013 27.4 25.5 261 174-468 79-347 (618)
293 3ygs_P Procaspase 9; apoptosis 34.6 98 0.0033 23.1 6.1 63 392-460 26-88 (97)
294 1n00_A Annexin GH1; membrane-b 34.0 2.9E+02 0.0099 25.6 14.4 190 265-467 77-292 (321)
295 3ltj_A Alpharep-4; protein eng 33.9 2E+02 0.0069 23.8 16.5 17 231-247 58-74 (201)
296 2chq_A Replication factor C sm 33.9 2.6E+02 0.009 25.1 16.0 19 468-486 297-315 (319)
297 3ltm_A Alpha-REP4; protein eng 33.5 2.1E+02 0.0072 23.9 16.5 162 202-382 39-200 (211)
298 4fke_A Aminopeptidase N; zinc 32.6 5.1E+02 0.017 28.0 14.0 48 347-397 738-785 (909)
299 1yii_A Annexin A5, annexin V, 32.2 3.1E+02 0.011 25.4 18.2 192 265-467 75-291 (320)
300 3eu9_A Huntingtin-interacting 30.8 14 0.00048 32.2 0.8 16 205-220 15-30 (240)
301 4fke_A Aminopeptidase N; zinc 30.5 5.5E+02 0.019 27.7 19.5 92 338-434 689-787 (909)
302 3txn_A 26S proteasome regulato 30.2 3.8E+02 0.013 25.8 16.8 165 300-467 21-208 (394)
303 2fu4_A Ferric uptake regulatio 30.1 1.4E+02 0.0049 20.9 6.6 32 388-419 35-66 (83)
304 2fu4_A Ferric uptake regulatio 29.8 1.4E+02 0.0047 21.0 6.2 58 396-454 8-66 (83)
305 2xdt_A Endoplasmic reticulum a 29.4 5.7E+02 0.019 27.6 13.6 88 338-434 683-779 (897)
306 2keb_A DNA polymerase subunit 28.9 1.8E+02 0.0063 21.8 7.2 56 424-481 28-88 (101)
307 2fe3_A Peroxide operon regulat 28.7 1.8E+02 0.006 23.3 7.3 11 423-433 39-49 (145)
308 3l6a_A Eukaryotic translation 28.4 1.2E+02 0.0042 28.8 7.1 59 266-328 15-77 (364)
309 1ug3_A EIF4GI, eukaryotic prot 28.4 60 0.002 30.7 4.9 62 301-365 14-76 (339)
310 2wvi_A Mitotic checkpoint seri 28.1 2.1E+02 0.0071 23.8 7.6 52 424-475 79-131 (164)
311 3hra_A Ankyrin repeat family p 27.8 29 0.00099 29.2 2.4 15 390-404 158-172 (201)
312 3ltj_A Alpharep-4; protein eng 27.7 2.6E+02 0.0089 23.1 17.9 109 333-453 88-196 (201)
313 3o48_A Mitochondria fission 1 27.6 2.4E+02 0.008 22.6 9.4 45 353-397 61-105 (134)
314 2ijq_A Hypothetical protein; s 27.1 1.4E+02 0.0048 24.7 6.3 49 349-397 46-102 (161)
315 3eiq_C Programmed cell death p 26.8 4.1E+02 0.014 25.1 10.6 70 337-407 219-290 (358)
316 2keb_A DNA polymerase subunit 26.7 2E+02 0.0069 21.6 7.1 57 388-446 27-88 (101)
317 3utm_A Tankyrase-1; tankyrase, 26.2 1.7E+02 0.0057 26.7 7.8 189 267-474 25-274 (351)
318 1ug3_A EIF4GI, eukaryotic prot 26.1 1.7E+02 0.0059 27.4 7.7 62 266-328 14-75 (339)
319 3c1d_A Protein ORAA, regulator 25.9 2.7E+02 0.0092 22.7 10.6 52 351-404 46-97 (159)
320 2p1h_A APAF-1, apoptotic prote 25.8 1.6E+02 0.0054 21.5 6.0 59 391-457 26-84 (94)
321 1w3w_A Annexin A8; coagulation 25.7 4.1E+02 0.014 24.7 17.9 193 265-467 82-299 (327)
322 3lvg_A Clathrin heavy chain 1; 25.6 3.2 0.00011 41.5 -4.6 103 179-287 66-168 (624)
323 2xig_A Ferric uptake regulatio 25.5 1.9E+02 0.0064 23.4 6.9 14 386-399 42-55 (150)
324 4aez_C MAD3, mitotic spindle c 25.4 1.1E+02 0.0036 27.0 5.5 51 388-438 132-183 (223)
325 1y8m_A FIS1; mitochondria, unk 25.1 2.7E+02 0.0094 22.5 12.8 71 403-475 37-110 (144)
326 2rfa_A Transient receptor pote 25.0 68 0.0023 27.5 4.4 184 269-467 6-221 (232)
327 3aji_A 26S proteasome non-ATPa 24.9 51 0.0017 28.3 3.5 153 303-475 8-167 (231)
328 3hra_A Ankyrin repeat family p 24.7 49 0.0017 27.7 3.3 15 460-474 158-172 (201)
329 1mzb_A Ferric uptake regulatio 24.4 1.8E+02 0.0062 22.9 6.5 61 360-421 8-69 (136)
330 2f8y_A Notch homolog 1, transl 24.4 73 0.0025 27.1 4.5 183 269-474 28-218 (223)
331 3dd4_A KV channel-interacting 24.0 3.4E+02 0.012 23.2 10.0 66 296-361 82-147 (229)
332 1y8m_A FIS1; mitochondria, unk 23.5 2.9E+02 0.01 22.3 12.1 66 333-398 37-105 (144)
333 2ab9_A Pro-SFTI-1; protein, be 23.2 24 0.00083 19.3 0.6 13 2-14 16-28 (31)
334 2ijq_A Hypothetical protein; s 22.9 2.3E+02 0.0079 23.4 6.9 52 381-432 43-102 (161)
335 2pnn_A Transient receptor pote 22.8 33 0.0011 30.8 1.8 188 267-465 14-255 (273)
336 3eyy_A Putative iron uptake re 22.6 1.7E+02 0.0057 23.5 6.0 20 388-407 35-54 (145)
337 2jul_A Calsenilin; EF-hand, ca 22.5 3.9E+02 0.013 23.3 11.1 65 297-361 110-174 (256)
338 3ljn_A Hypothetical protein; a 22.4 41 0.0014 31.6 2.5 212 201-430 22-266 (364)
339 4a1g_A Mitotic checkpoint seri 21.8 1.6E+02 0.0054 24.2 5.6 31 338-368 104-134 (152)
340 3jxi_A Vanilloid receptor-rela 21.5 84 0.0029 27.6 4.3 118 341-463 8-160 (260)
341 1iqp_A RFCS; clamp loader, ext 21.0 4.5E+02 0.016 23.5 12.8 137 350-489 170-326 (327)
342 4g8k_A 2-5A-dependent ribonucl 20.5 65 0.0022 29.8 3.5 14 99-112 34-47 (337)
343 2w57_A Ferric uptake regulatio 20.4 2.1E+02 0.0072 23.1 6.2 61 360-421 7-68 (150)
344 1wty_A Hypothetical protein TT 20.3 1.7E+02 0.0057 22.6 5.3 29 279-309 4-32 (119)
345 1oyz_A Hypothetical protein YI 20.1 4.4E+02 0.015 23.0 21.9 122 333-468 140-262 (280)
346 4ets_A Ferric uptake regulatio 20.0 2.4E+02 0.0081 23.1 6.5 68 386-454 13-83 (162)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.8e-35 Score=306.39 Aligned_cols=187 Identities=12% Similarity=0.134 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHhhcCCCCCC
Q 011102 264 GVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDK---------YMLVMTLLDELGQRDDLNLS 334 (493)
Q Consensus 264 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~---------~~~a~~l~~~m~~~~g~~p~ 334 (493)
.+++.+|++|++.|++++|+++|++|.+.|+.||.+|||+||.+|++. +. +++|.++|++|... |+.||
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~-~~~~~~~~~~~l~~A~~lf~~M~~~-G~~Pd 104 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLA-EAATESSPNPGLSRGFDIFKQMIVD-KVVPN 104 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTC-CCCSSSSCCHHHHHHHHHHHHHHHT-TCCCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhC-CchhhhhhcchHHHHHHHHHHHHHh-CCCCC
Confidence 345566666666666666666666666666666666666666666654 32 45555666666555 56666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011102 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414 (493)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~ 414 (493)
..|||+||++|++.|++++|.++|++|.+.|+.||.+|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011102 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452 (493)
Q Consensus 415 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~ 452 (493)
|++.|++++|.++|++|.+.|+.|+..||++++..|+.
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666555554
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5.8e-35 Score=302.54 Aligned_cols=203 Identities=15% Similarity=0.107 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC--------
Q 011102 280 KLAWKLLMVAKDGGRMLDPS-IYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQK-------- 350 (493)
Q Consensus 280 ~~A~~l~~~m~~~g~~pd~~-t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~-------- 350 (493)
..+..+.+++++.++...+. .++.+|++|++. |++++|+++|++|.+. |+.||..|||+||++|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~-G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~ 84 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKK-GDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNP 84 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcc
Confidence 45667778888888776654 689999999999 9999999999999998 999999999999999998765
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011102 351 -FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFS 429 (493)
Q Consensus 351 -~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~ 429 (493)
+++|.++|++|.+.|+.||.+|||+||++|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|+
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHh
Q 011102 430 KLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484 (493)
Q Consensus 430 ~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~~ 484 (493)
+|.+.|+.||..||++||++|++.|++++|.++|++|.+.|+.|+..||++|+..
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~ 219 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEW 219 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999984
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.95 E-value=2.1e-26 Score=243.96 Aligned_cols=361 Identities=8% Similarity=-0.065 Sum_probs=203.8
Q ss_pred cccchhHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhHHHhhhh---hhhhhhhhccCCchhHHHHHHH
Q 011102 97 IWESEELEAISSLFQGRIPQKPGRLYRERPLPLPLPHRLRPLELPTPKKRVCLAS---SRASICKQVYKNPSFLISLARD 173 (493)
Q Consensus 97 ~~~~~~~~~a~~lf~~m~~g~~p~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~l~~l~~~ 173 (493)
....|+++.|..+|+.|. +..|+..++..+. ..|...|..++|. ......+ .... .....
T Consensus 94 ~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~l~----------~~~~~~g~~~~A~~~~~~~~~~~---~~~~---~~~~l 156 (597)
T 2xpi_A 94 ALMQQQYKCAAFVGEKVL-DITGNPNDAFWLA----------QVYCCTGDYARAKCLLTKEDLYN---RSSA---CRYLA 156 (597)
T ss_dssp HHHTTCHHHHHHHHHHHH-HHHCCHHHHHHHH----------HHHHHTTCHHHHHHHHHHTCGGG---TCHH---HHHHH
T ss_pred HHHccCchHHHHHHHHHH-hhCCCchHHHHHH----------HHHHHcCcHHHHHHHHHHHhccc---cchh---HHHHH
Confidence 445788999999999882 2345556666666 6666666666661 1111011 1111 22334
Q ss_pred HhhccCCCCHHHHHHHHhhh-ccc--------------------CcHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCH
Q 011102 174 IKGLDSHKDVAEVLDKCGRF-LRK--------------------GSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDD 232 (493)
Q Consensus 174 l~~~~~~~~~~~a~~~~~~m-~~~--------------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~ 232 (493)
...+.+.|++++|+++|++. +.. .+|+.++.+|.+.|++++|+++|+.|.+. +.. +.
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~-~~ 234 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV-DAK-CY 234 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT-CH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Cch-hh
Confidence 46677889999999999843 332 27888999999999999999999988754 211 11
Q ss_pred HHHHHH--------------------------------------HHHHHHcCCCchhhhHHHhhcc----CcHHHHHHHH
Q 011102 233 RLLAST--------------------------------------VEVLARHHELKVPFKLENFVSL----ASKGVLEATA 270 (493)
Q Consensus 233 ~t~~~l--------------------------------------i~~~~~~g~~~~~~~l~~~~~~----~~~~~~~~li 270 (493)
..+..+ +.+|.+.|+ ..+++..|..+ .+..+|+.++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE--LRRAEDYLSSINGLEKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHH--HHHHHHHHHTSTTGGGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcch--HHHHHHHHHHhhcCCchHHHHHHHH
Confidence 122211 222222232 12222223322 2444555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC---------------------------------CCCCHHHHHHHHHHHhcCCCCHHH
Q 011102 271 KGFVKGGNLKLAWKLLMVAKDGG---------------------------------RMLDPSIYAKLILELGKNPDKYML 317 (493)
Q Consensus 271 ~~~~~~g~~~~A~~l~~~m~~~g---------------------------------~~pd~~t~~~li~~~~~~~~~~~~ 317 (493)
.+|.+.|++++|.++|++|.+.+ ...+..+|+.+...|.+. |++++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 391 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCV-NKISE 391 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHT-TCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHh-ccHHH
Confidence 55555555555555555554432 122455555566666666 66666
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011102 318 VMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397 (493)
Q Consensus 318 a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~ 397 (493)
|.++|+++.+. ...+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|++|.
T Consensus 392 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 392 ARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666665543 12245566666666666666666666666655432 2355566666666666666666666666665
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 011102 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA----GFCPT--YDIYRDMIRIFMASGRLAKCRDVCKEAEMAGF 471 (493)
Q Consensus 398 ~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 471 (493)
+... .+..+|+.+...|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.++|+++.+.+
T Consensus 469 ~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 546 (597)
T 2xpi_A 469 ALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS- 546 (597)
T ss_dssp HHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 4321 24556666666666666666666666666543 44555 5566666666666666666666666665543
Q ss_pred ccCHHHHHHHHHh
Q 011102 472 KLDKQTVVELLQI 484 (493)
Q Consensus 472 ~pd~~t~~~Ll~~ 484 (493)
..+..+|..+..+
T Consensus 547 p~~~~~~~~l~~~ 559 (597)
T 2xpi_A 547 TNDANVHTAIALV 559 (597)
T ss_dssp SCCHHHHHHHHHH
T ss_pred CCChHHHHHHHHH
Confidence 2245555555543
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=7.6e-26 Score=239.70 Aligned_cols=299 Identities=6% Similarity=-0.085 Sum_probs=257.0
Q ss_pred HhhccCCCCHHHHHHHHhhhcc--cC--cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCc
Q 011102 174 IKGLDSHKDVAEVLDKCGRFLR--KG--SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELK 249 (493)
Q Consensus 174 l~~~~~~~~~~~a~~~~~~m~~--~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~ 249 (493)
+..+.+.|++++|.+.|+++.. .+ +|+.++.+|.+.|++++|+++|+.+.+. + ..+..+|+.++.++.+.|+++
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI-D-PYNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCCTTHHHHHHHHHHHTCHH
T ss_pred HHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc-C-cccHHHHHHHHHHHHHhCCHH
Confidence 3566788999999999998876 23 8999999999999999999999999865 3 236678999999999999955
Q ss_pred hhhhHHHhhcc-----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011102 250 VPFKLENFVSL-----ASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDE 324 (493)
Q Consensus 250 ~~~~l~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~ 324 (493)
. ++..+..+ .+..+|+.++.+|.+.|++++|.++|+++.+.. ..+..+|+.++.+|.+. |++++|.++|++
T Consensus 357 ~--A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 432 (597)
T 2xpi_A 357 K--LYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIE-GEHDQAISAYTT 432 (597)
T ss_dssp H--HHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCHHHHHHHHHH
T ss_pred H--HHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 4 44444433 367789999999999999999999999998743 23578999999999999 999999999999
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----C
Q 011102 325 LGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS----N 400 (493)
Q Consensus 325 m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----g 400 (493)
+.+. ...+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|++|.+. +
T Consensus 433 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 509 (597)
T 2xpi_A 433 AARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ 509 (597)
T ss_dssp HHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc
Confidence 9875 34578999999999999999999999999998653 457899999999999999999999999999876 7
Q ss_pred CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC-HHH
Q 011102 401 CLFD--LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD-KQT 477 (493)
Q Consensus 401 i~pd--~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t 477 (493)
..|+ ..+|..+..+|.+.|++++|.++|+++.+.+ ..+..+|..+..+|.+.|++++|.++|+++.+. .|+ ...
T Consensus 510 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~ 586 (597)
T 2xpi_A 510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMA 586 (597)
T ss_dssp CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHH
Confidence 7888 7899999999999999999999999998765 348899999999999999999999999999874 454 445
Q ss_pred HHHHHHh
Q 011102 478 VVELLQI 484 (493)
Q Consensus 478 ~~~Ll~~ 484 (493)
|..|-.+
T Consensus 587 ~~~l~~~ 593 (597)
T 2xpi_A 587 SDLLKRA 593 (597)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 5444443
No 5
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.87 E-value=1.2e-22 Score=216.79 Aligned_cols=136 Identities=13% Similarity=0.138 Sum_probs=98.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011102 334 SQQDCTAIMKVGIRLQKFGVVESLFHWFT---HSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV 410 (493)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~ 410 (493)
-..|||+||++||++|++++|.++|++|. ..|+.||++|||+||+|||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34577777777777777777777777765 347777888888888888888888888888888877777788888888
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC
Q 011102 411 VIKLFVALND-ISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474 (493)
Q Consensus 411 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 474 (493)
||+++|+.|+ .++|.++|++|.+.|+.||.+||++++.++.+.+ +++.++++ ..++.|+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCC
Confidence 8887777776 4677777788877777788888877777666543 33333333 3455554
No 6
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.86 E-value=8.1e-22 Score=210.53 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=110.4
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011102 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEA---SNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIY 443 (493)
Q Consensus 367 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~---~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty 443 (493)
.--..|||+||++||+.|++++|.++|++|.+ .|+.||++|||+||+|||+.|++++|.++|++|.+.|+.||++||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34467999999999999999999999988764 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHCCCccCHHHHHHHHHh
Q 011102 444 RDMIRIFMASGR-LAKCRDVCKEAEMAGFKLDKQTVVELLQI 484 (493)
Q Consensus 444 ~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~t~~~Ll~~ 484 (493)
|+||++||+.|+ .++|.++|++|.+.|+.||.+||++++..
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 999999999998 57899999999999999999999977653
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.80 E-value=5.9e-18 Score=169.33 Aligned_cols=293 Identities=12% Similarity=-0.015 Sum_probs=227.3
Q ss_pred hhccCCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHcCCC
Q 011102 175 KGLDSHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDD-RLLASTVEVLARHHEL 248 (493)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~li~~~~~~g~~ 248 (493)
..+.+.|++++|+..|.++.... .|..+...+.+.|++++|++.|+.+.+. .|+. ..+..+-..+...|++
T Consensus 75 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~ 151 (388)
T 1w3b_A 75 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRL 151 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCH
Confidence 44566788899988888765432 6788888889999999999999888754 3443 3556666677777875
Q ss_pred chhhhHHHhhcc-----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 011102 249 KVPFKLENFVSL-----ASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLD 323 (493)
Q Consensus 249 ~~~~~l~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~ 323 (493)
+.+ +..|... .+..+|+.+...|.+.|++++|.+.|+++.+.. +-+...|..+-..+... |++++|...++
T Consensus 152 ~~A--~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~-~~~~~A~~~~~ 227 (388)
T 1w3b_A 152 EEA--KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEA-RIFDRAVAAYL 227 (388)
T ss_dssp HHH--HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT-TCTTHHHHHHH
T ss_pred HHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 443 3334332 245688889999999999999999999988754 22456777777888888 89999999998
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 011102 324 ELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF 403 (493)
Q Consensus 324 ~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~p 403 (493)
+.... -.-+..++..+...|.+.|++++|.+.|+++.+.. +.+..+|+.+...|.+.|++++|.+.|+++.+.. ..
T Consensus 228 ~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 303 (388)
T 1w3b_A 228 RALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PT 303 (388)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TT
T ss_pred HHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cc
Confidence 87664 12357888899999999999999999999988653 2356789999999999999999999999988753 45
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC-HHHHHHH
Q 011102 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD-KQTVVEL 481 (493)
Q Consensus 404 d~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~L 481 (493)
+..+|+.+...+.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|.+.|+++.+ +.|+ ...|..+
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~l 379 (388)
T 1w3b_A 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 379 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhH
Confidence 77889999999999999999999999988643 34578899999999999999999999999986 4554 3344433
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.77 E-value=3.4e-15 Score=149.19 Aligned_cols=295 Identities=9% Similarity=-0.036 Sum_probs=243.5
Q ss_pred ccCCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHcCCCch
Q 011102 177 LDSHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFP-DDRLLASTVEVLARHHELKV 250 (493)
Q Consensus 177 ~~~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~li~~~~~~g~~~~ 250 (493)
+...++.++|...+....... .|..+...|.+.|++++|++.|+.+.+. .| +..+|..+..++.+.|+++.
T Consensus 43 ~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 43 HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL---KPDFIDGYINLAAALVAAGDMEG 119 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHSCSSH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHcCCHHH
Confidence 455688999998887655433 7899999999999999999999999854 34 45579999999999999776
Q ss_pred hhhHHHhhc----cC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011102 251 PFKLENFVS----LA-SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDEL 325 (493)
Q Consensus 251 ~~~l~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m 325 (493)
+... |.. .| +..++..+-..|.+.|++++|.++|+++.+.. +-+..+|+.+...+.+. |++++|...|+++
T Consensus 120 A~~~--~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a 195 (388)
T 1w3b_A 120 AVQA--YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQ-GEIWLAIHHFEKA 195 (388)
T ss_dssp HHHH--HHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHH--HHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 5543 332 22 44578888899999999999999999998853 23467899999999999 9999999999999
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 011102 326 GQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405 (493)
Q Consensus 326 ~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~ 405 (493)
... -.-+...|..+-..+...|++++|...|++..+.. +-+..+|+.+...|.+.|++++|.+.|+++.+... -+.
T Consensus 196 l~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~ 271 (388)
T 1w3b_A 196 VTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFP 271 (388)
T ss_dssp HHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCH
T ss_pred Hhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCH
Confidence 875 23356788999999999999999999999887652 23588999999999999999999999999988532 246
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHh
Q 011102 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484 (493)
Q Consensus 406 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~~ 484 (493)
.+|..+...+.+.|++++|...|+++.+.. +.+..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+..+
T Consensus 272 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 348 (388)
T 1w3b_A 272 DAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASV 348 (388)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 789999999999999999999999998653 4588999999999999999999999999998642 3346666666553
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.77 E-value=1.6e-15 Score=154.27 Aligned_cols=298 Identities=10% Similarity=0.014 Sum_probs=239.7
Q ss_pred HHHHHhhccCCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 011102 170 LARDIKGLDSHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLAR 244 (493)
Q Consensus 170 l~~~l~~~~~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~ 244 (493)
+......+.+.|++++|+..|.++.... .|..+...|.+.|++++|++.|+.+.+. + ..+..++..+..++.+
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~~~~l~~~~~~ 106 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL-K-MDFTAARLQRGHLLLK 106 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CCcHHHHHHHHHHHHH
Confidence 3333456677899999999999876543 7888889999999999999999999865 2 2357789999999999
Q ss_pred cCCCchhhhHHHhhcc----C-cH---HHHHHHHH------------HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011102 245 HHELKVPFKLENFVSL----A-SK---GVLEATAK------------GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKL 304 (493)
Q Consensus 245 ~g~~~~~~~l~~~~~~----~-~~---~~~~~li~------------~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 304 (493)
.|+++. ++..|... + +. .+|..++. .+.+.|++++|.++|+++.+.. +.+..++..+
T Consensus 107 ~g~~~~--A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 183 (450)
T 2y4t_A 107 QGKLDE--AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELR 183 (450)
T ss_dssp TTCHHH--HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cCCHHH--HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 998554 44444432 2 23 55665544 4899999999999999998753 3467889999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--------
Q 011102 305 ILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTL-------- 376 (493)
Q Consensus 305 i~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l-------- 376 (493)
...|.+. |++++|.++|+++.+. ...+..+|..+...|.+.|++++|.+.|+++.+.. +.+...+..+
T Consensus 184 ~~~~~~~-g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 184 AECFIKE-GEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHT-TCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHH
Confidence 9999999 9999999999998775 23568899999999999999999999999998642 2344555555
Q ss_pred ----HHHHHcCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011102 377 ----IHSRLSEKKCREALTVVWNMEASNCLFD-----LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447 (493)
Q Consensus 377 ----i~~~~~~g~~~~A~~l~~~M~~~gi~pd-----~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li 447 (493)
...|.+.|++++|.+.|+++.+. .|+ ...|..+...+.+.|++++|...++++.+.. +.+...|..+.
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 336 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 88999999999999999999874 355 4578889999999999999999999988653 23689999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCccCHH-HHHHH
Q 011102 448 RIFMASGRLAKCRDVCKEAEMAGFKLDKQ-TVVEL 481 (493)
Q Consensus 448 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~L 481 (493)
.+|...|++++|.+.++++.+ +.|+.. .+..+
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l 369 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQE--HNENDQQIREGL 369 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHH
Confidence 999999999999999999987 556543 44333
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.72 E-value=1.3e-14 Score=147.40 Aligned_cols=273 Identities=10% Similarity=-0.008 Sum_probs=222.8
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhcc-----CcHHHHHHHHHH
Q 011102 198 SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSL-----ASKGVLEATAKG 272 (493)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~-----~~~~~~~~li~~ 272 (493)
.|..+...|.+.|++++|+.+|+.+.+. ...+..+|..+..++...|+++. ++..+... .+..+|..+...
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKA--ALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHH--HHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 6778888999999999999999999864 23478889999999999998544 44444432 256789999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHH------------HhcCCCCHHHHHHHHHHHhhcCCCCCCHH
Q 011102 273 FVKGGNLKLAWKLLMVAKDGGRMLDP----SIYAKLILE------------LGKNPDKYMLVMTLLDELGQRDDLNLSQQ 336 (493)
Q Consensus 273 ~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~li~~------------~~~~~~~~~~a~~l~~~m~~~~g~~p~~~ 336 (493)
|.+.|++++|.+.|+++.+.. |+. ..+..+... +.+. |++++|...|+++... ...+..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~--~~~~~~ 178 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGS-GDYTAAIAFLDKILEV--CVWDAE 178 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCChH
Confidence 999999999999999999854 554 455555443 7888 9999999999999875 345788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHH----
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD-LPAYRVV---- 411 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd-~~ty~~l---- 411 (493)
.+..+..+|.+.|++++|.++|+++.+.. +.+..+|+.+...|...|++++|.+.|+++.+. .|+ ...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHH
Confidence 99999999999999999999999987642 457899999999999999999999999999864 344 3344444
Q ss_pred --------HHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHH
Q 011102 412 --------IKLFVALNDISRAIRYFSKLKEAGFCPT-----YDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTV 478 (493)
Q Consensus 412 --------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 478 (493)
...|.+.|++++|..+|+++.+.. |+ ..+|..+...+.+.|++++|.+.++++.+.. +.+..+|
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~ 332 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 788999999999999999998643 44 4588999999999999999999999987642 2356777
Q ss_pred HHHHHhh
Q 011102 479 VELLQIE 485 (493)
Q Consensus 479 ~~Ll~~~ 485 (493)
..+..++
T Consensus 333 ~~l~~~~ 339 (450)
T 2y4t_A 333 KDRAEAY 339 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.61 E-value=8.5e-12 Score=121.83 Aligned_cols=295 Identities=11% Similarity=0.018 Sum_probs=229.6
Q ss_pred hhccCCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCc
Q 011102 175 KGLDSHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELK 249 (493)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~ 249 (493)
..+...|++++|+..|.+..... .|..+-..+.+.|++++|+..|+.+.+. . .-+...|..+...+...|+++
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~ 88 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL-K-MDFTAARLQRGHLLLKQGKLD 88 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-C-CCcchHHHHHHHHHHHcCChH
Confidence 34556799999999999775543 6777888999999999999999998864 1 225678899999999999855
Q ss_pred hhhhHHHhhc----cC----cHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 011102 250 VPFKLENFVS----LA----SKGVLEAT------------AKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELG 309 (493)
Q Consensus 250 ~~~~l~~~~~----~~----~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 309 (493)
.+. ..+.. .+ +...+..+ ...+...|++++|.++|+++.+.. +.+...+..+...+.
T Consensus 89 ~A~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 165 (359)
T 3ieg_A 89 EAE--DDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFI 165 (359)
T ss_dssp HHH--HHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 444 33332 22 23344444 578899999999999999998754 246778888889999
Q ss_pred cCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH------------HHH
Q 011102 310 KNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYT------------TLI 377 (493)
Q Consensus 310 ~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~------------~li 377 (493)
.. |++++|...+++.... ...+...+..+...|.+.|++++|.+.|++..+.. +.+...+. .+.
T Consensus 166 ~~-~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 166 KE-GEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HT-TCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HC-CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHH
Confidence 99 9999999999999875 34577899999999999999999999999987653 22333333 236
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011102 378 HSRLSEKKCREALTVVWNMEASNCLFDL-----PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452 (493)
Q Consensus 378 ~~~~~~g~~~~A~~l~~~M~~~gi~pd~-----~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~ 452 (493)
..+.+.|++++|.+.++++.+.. |+. ..|..+-..+.+.|++++|...|+...+.. ..+..+|..+...|.+
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 67899999999999999988753 332 234556788999999999999999998653 2378899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCccC-HHHHHHHHH
Q 011102 453 SGRLAKCRDVCKEAEMAGFKLD-KQTVVELLQ 483 (493)
Q Consensus 453 ~g~~~~A~~l~~~m~~~g~~pd-~~t~~~Ll~ 483 (493)
.|++++|.+.|++..+. .|+ ...+..|.+
T Consensus 319 ~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQEH--NENDQQIREGLEK 348 (359)
T ss_dssp TTCHHHHHHHHHHHHTT--CTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--CCCChHHHHHHHH
Confidence 99999999999999874 455 444444444
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.61 E-value=6.8e-13 Score=128.39 Aligned_cols=273 Identities=9% Similarity=-0.093 Sum_probs=202.7
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhc-----cCcHHHHHHHHHH
Q 011102 198 SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVS-----LASKGVLEATAKG 272 (493)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~-----~~~~~~~~~li~~ 272 (493)
.+..+...+...|++++|+++|+.+.+... .+...+..++..+...|+++. ++..+.. ..+..+|..+...
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~~~~~~~~~~~~~--A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDP--FHASCLPVHIGTLVELNKANE--LFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTTTHHHHHHHHHHHTCHHH--HHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CChhhHHHHHHHHHHhhhHHH--HHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 556666677777888888888877765422 223345556666677776433 3332322 1245678888888
Q ss_pred HHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCH
Q 011102 273 FVKGG-NLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKF 351 (493)
Q Consensus 273 ~~~~g-~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~ 351 (493)
+...| ++++|.+.|++..+.. +.+...|..+...+... |++++|.+.+++..+. ...+...+..+...|...|++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVE-SEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhH
Confidence 88899 8999999999988754 23466788888888888 9999999999998765 223456677788899999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHcCCHHH
Q 011102 352 GVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN--------CLFDLPAYRVVIKLFVALNDISR 423 (493)
Q Consensus 352 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g--------i~pd~~ty~~li~~~~~~g~~~~ 423 (493)
++|.+.|++..+.. +.+...|..+...|...|++++|.+.+++..+.. ...+..+|..+...|.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999987553 4467889999999999999999999999876531 13345788889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccC-HHHHHHHH
Q 011102 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLD-KQTVVELL 482 (493)
Q Consensus 424 A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~Ll 482 (493)
|...|++..+..- .+...|..+...|.+.|++++|.+.+++..+ +.|+ ...+..+-
T Consensus 255 A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~ 311 (330)
T 3hym_B 255 ALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLG 311 (330)
T ss_dssp HHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHH
T ss_pred HHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHH
Confidence 9999999886542 3677888899999999999999999998765 4454 44444433
No 13
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.58 E-value=7.6e-13 Score=130.48 Aligned_cols=276 Identities=9% Similarity=-0.055 Sum_probs=210.0
Q ss_pred CCHHHHHH-HHhhhcc---------cCcHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCch
Q 011102 181 KDVAEVLD-KCGRFLR---------KGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKV 250 (493)
Q Consensus 181 ~~~~~a~~-~~~~m~~---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~ 250 (493)
+++++|++ .+.+... ...+..+-..+.+.|++++|+..|+.+.+. ...+..+|..+...+.+.|+++.
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHH
Confidence 55566665 5552221 225777888999999999999999999865 23467788899999999998554
Q ss_pred hhhHHHhhc-----cCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHH---------------HHHHHh
Q 011102 251 PFKLENFVS-----LASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPS-IYAK---------------LILELG 309 (493)
Q Consensus 251 ~~~l~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~---------------li~~~~ 309 (493)
++..+.. ..+..+|..+...|.+.|++++|.+.|+++.+.. |+.. .+.. .+..+.
T Consensus 117 --A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 117 --AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp --HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHH
T ss_pred --HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 4433433 2356789999999999999999999999998864 3221 1111 244444
Q ss_pred cCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 011102 310 KNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA 389 (493)
Q Consensus 310 ~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 389 (493)
.. |++++|...|+++.....-.++..++..+...|.+.|++++|...|++..+.. +.+..+|+.+...|.+.|++++|
T Consensus 193 ~~-~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 SD-SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HH-HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hc-ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 66 89999999999988762222258899999999999999999999999987652 34678999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHHcCCHHHH
Q 011102 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC----------PTYDIYRDMIRIFMASGRLAKC 459 (493)
Q Consensus 390 ~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p~~~ty~~li~~~~~~g~~~~A 459 (493)
.+.|+++.+.. ..+...+..+...|.+.|++++|...|++..+..-. ....+|..+..+|.+.|++++|
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999987753 245788999999999999999999999988743211 1268899999999999999999
Q ss_pred HHHHHH
Q 011102 460 RDVCKE 465 (493)
Q Consensus 460 ~~l~~~ 465 (493)
..++++
T Consensus 350 ~~~~~~ 355 (368)
T 1fch_A 350 GAADAR 355 (368)
T ss_dssp HHHHTT
T ss_pred HHhHHH
Confidence 988763
No 14
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.57 E-value=1.2e-12 Score=125.80 Aligned_cols=255 Identities=7% Similarity=-0.012 Sum_probs=193.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHHcCCCchhhhHHHhhc--cCcHHHHHHHHHHHHhcCC
Q 011102 203 VRELGHMNLPERALQTFCWAQKQPHLFPDD--RLLASTVEVLARHHELKVPFKLENFVS--LASKGVLEATAKGFVKGGN 278 (493)
Q Consensus 203 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~--~t~~~li~~~~~~g~~~~~~~l~~~~~--~~~~~~~~~li~~~~~~g~ 278 (493)
|+-....|++..|+..++... ...|+. .....+..++...|+. ..++..+.. .++..++..+...+.+.|+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~---~~~p~~~~e~~~~l~r~yi~~g~~--~~al~~~~~~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVK---PSSPERDVERDVFLYRAYLAQRKY--GVVLDEIKPSSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSC---CCSHHHHHHHHHHHHHHHHHTTCH--HHHHHHSCTTSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhcc---cCCchhhHHHHHHHHHHHHHCCCH--HHHHHHhcccCChhHHHHHHHHHHHcCCCc
Confidence 445566788888888887653 334443 2445567788888874 444444433 2345578888999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011102 279 LKLAWKLLMVAKDGGRMLDPS-IYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESL 357 (493)
Q Consensus 279 ~~~A~~l~~~m~~~g~~pd~~-t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 357 (493)
.++|++.++++...+..|+.. .+..+-..+.+. |++++|++.++. ..+...+..+...|.+.|++++|.+.
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~-g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD-QNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT-TCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC-CCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999887666544 445555778888 999999999976 35778899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 358 FHWFTHSGRDPTVVMY---TTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434 (493)
Q Consensus 358 ~~~m~~~g~~p~~~ty---~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~ 434 (493)
|+++.+.. |+...+ .+.+..+...|++++|..+|+++.+. ...+...|+.+-.++.+.|++++|...|++..+.
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99998763 553211 23344555669999999999999876 3457888999999999999999999999998865
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCCCccCHH
Q 011102 435 GFCPTYDIYRDMIRIFMASGRLAK-CRDVCKEAEMAGFKLDKQ 476 (493)
Q Consensus 435 g~~p~~~ty~~li~~~~~~g~~~~-A~~l~~~m~~~g~~pd~~ 476 (493)
.- -+..++..++..+...|+.++ +.++++++.+ +.|+..
T Consensus 230 ~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~ 269 (291)
T 3mkr_A 230 DS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHP 269 (291)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCH
T ss_pred CC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCCh
Confidence 42 377889999999999999876 5788888876 345443
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.55 E-value=1.2e-14 Score=144.75 Aligned_cols=248 Identities=8% Similarity=0.027 Sum_probs=108.2
Q ss_pred CCCCHHHHHHHHhhhcccCcHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhh
Q 011102 179 SHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV 258 (493)
Q Consensus 179 ~~~~~~~a~~~~~~m~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~ 258 (493)
+.|++++|.+.+++...+..|+.+..++.+.|++++|++.|... +|..+|..++.++...|+++.+.......
T Consensus 15 ~~~~ld~A~~fae~~~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 45789999999999988889999999999999999999999643 36678899999999989876655532221
Q ss_pred --ccCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHH
Q 011102 259 --SLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQ 336 (493)
Q Consensus 259 --~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~ 336 (493)
..++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|... |.+++|..+|..+ .
T Consensus 88 rk~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~-g~yeeA~~~Y~~a----------~ 149 (449)
T 1b89_A 88 RKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDE-KMYDAAKLLYNNV----------S 149 (449)
T ss_dssp ---------------------CHHHHTTTTT-------CC-----------------CTTTHHHHHHHT----------T
T ss_pred HHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHc-CCHHHHHHHHHHh----------h
Confidence 13345678899999999999999988885 27888999999999999 9999999999877 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~ 416 (493)
.|..+.+++.+.|++++|.+.+.++ .+..+|..++.+|+..|+++.|......+. +.|+. ...++..|.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~--l~~lv~~Ye 218 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQ 218 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHH--HHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhh--HHHHHHHHH
Confidence 5889999999999999999999987 378999999999999999999965544322 33433 556888999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 011102 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS--GRLAKCRDVC 463 (493)
Q Consensus 417 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~--g~~~~A~~l~ 463 (493)
+.|++++|..+++.-.... .-....|+-|--+|++- ++..+.+++|
T Consensus 219 k~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999998877444 45677888887777765 3444444444
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.55 E-value=2.9e-14 Score=141.97 Aligned_cols=219 Identities=10% Similarity=0.093 Sum_probs=51.0
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011102 209 MNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMV 288 (493)
Q Consensus 209 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 288 (493)
.|+.++|.++++.+.. ..+|..+..++.+.|++ .+++..|...+|..+|..++..+...|++++|.+.++.
T Consensus 16 ~~~ld~A~~fae~~~~-------~~vWs~La~A~l~~g~~--~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 16 IGNLDRAYEFAERCNE-------PAVWSQLAKAQLQKGMV--KEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCH--HHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3445555555554421 12445555555555542 23333344444444555555555555555555554443
Q ss_pred HHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011102 289 AKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP 368 (493)
Q Consensus 289 m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 368 (493)
..+. .+++.+.+.++.+|.+. |+++++.++++ .|+..+|+.+.+.|...|++++|...|..+
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Kl-g~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKT-NRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHh--CccchhHHHHHHHHHHh-CCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 3332 23344445555555555 55555444442 133345555555555555555555555543
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011102 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448 (493)
Q Consensus 369 ~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~ 448 (493)
..|..|..++.+.|++++|.+.+.++ -+..+|..++.+|+..|+++.|...... +..+..-...++.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELIN 215 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHH
Confidence 13555555555555555555555544 1445555555555555555555333222 1122222334555
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 011102 449 IFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 449 ~~~~~g~~~~A~~l~~~m~ 467 (493)
.|.+.|++++|..+++...
T Consensus 216 ~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHh
Confidence 5555555555555554443
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.55 E-value=1.1e-12 Score=129.48 Aligned_cols=259 Identities=9% Similarity=-0.101 Sum_probs=193.8
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhc-----cCcHHHHHHHHHH
Q 011102 198 SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVS-----LASKGVLEATAKG 272 (493)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~-----~~~~~~~~~li~~ 272 (493)
.|..+-..+.+.|++++|+++|+.+... ...+..+|..+...+.+.|+++. ++..|.. ..+..+|..+...
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQA--AIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4666666777788888888888877753 12356677777788888777443 3333332 2246688899999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 011102 273 FVKGGNLKLAWKLLMVAKDGGRMLD-----------PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341 (493)
Q Consensus 273 ~~~~g~~~~A~~l~~~m~~~g~~pd-----------~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~l 341 (493)
|.+.|++++|.+.|+++.+.. |+ ...+..+...+.+. |++++|.++|+++.....-..+..++..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDS-SVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CC-HHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 999999999999999998743 32 22334456778888 99999999999998762222368899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011102 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDI 421 (493)
Q Consensus 342 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~ 421 (493)
...|.+.|++++|.+.|++..+.. +.+..+|+.+...|.+.|++++|.+.|+++.+.. .-+..+|..+-..|.+.|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 999999999999999999987653 4468899999999999999999999999987753 23478899999999999999
Q ss_pred HHHHHHHHHHHHCC--C-C--------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011102 422 SRAIRYFSKLKEAG--F-C--------PTYDIYRDMIRIFMASGRLAKCRDVCKE 465 (493)
Q Consensus 422 ~~A~~~~~~m~~~g--~-~--------p~~~ty~~li~~~~~~g~~~~A~~l~~~ 465 (493)
++|...|++..+.. . . .+...|..+-.++...|+.+.|.++.+.
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999887422 1 1 1367899999999999999988877654
No 18
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.54 E-value=2.7e-12 Score=123.93 Aligned_cols=258 Identities=9% Similarity=-0.077 Sum_probs=191.3
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhc-----cCcHHHHHHHHHH
Q 011102 198 SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVS-----LASKGVLEATAKG 272 (493)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~-----~~~~~~~~~li~~ 272 (493)
.|-..-..+.+.|++++|+.+|+.+.+. . .-+..++..+...+.+.|+++. ++..+.. ..+..+|..+...
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~--A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQA-A-PEREEAWRSLGLTQAENEKDGL--AIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 3444455666667777777777766643 1 2255566666666666666433 3222222 1245678888889
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHH------------H-HH--HhcCCCCHHHHHHHHHHHhhcCCCCCCHH
Q 011102 273 FVKGGNLKLAWKLLMVAKDGGRMLDPS-IYAKL------------I-LE--LGKNPDKYMLVMTLLDELGQRDDLNLSQQ 336 (493)
Q Consensus 273 ~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~l------------i-~~--~~~~~~~~~~a~~l~~~m~~~~g~~p~~~ 336 (493)
|.+.|++++|.+.|+++.+.. |+.. .+..+ + .. +... |++++|.+.++++.+. ...+..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~--~~~~~~ 173 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAP-NEYRECRTLLHAALEM--NPNDAQ 173 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSH-HHHHHHHHHHHHHHHH--STTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHc-ccHHHHHHHHHHHHhh--CCCCHH
Confidence 999999999999999998754 3322 22222 0 33 5666 8999999999998875 234788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~ 416 (493)
.+..+...|.+.|++++|.+.|++..+.. +.+..+|..+...|...|++++|.+.|+++.+.. ..+..++..+...|.
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 99999999999999999999999987653 3467889999999999999999999999987753 235788999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 417 ALNDISRAIRYFSKLKEAGFCP-----------TYDIYRDMIRIFMASGRLAKCRDVCKEA 466 (493)
Q Consensus 417 ~~g~~~~A~~~~~~m~~~g~~p-----------~~~ty~~li~~~~~~g~~~~A~~l~~~m 466 (493)
+.|++++|.+.|++..+..-.. +..+|..+..+|.+.|++++|.+++++.
T Consensus 252 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999987543221 4788999999999999999999987654
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.53 E-value=8.4e-12 Score=120.62 Aligned_cols=272 Identities=11% Similarity=-0.051 Sum_probs=216.0
Q ss_pred hccCCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC-CCc
Q 011102 176 GLDSHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHH-ELK 249 (493)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g-~~~ 249 (493)
.+...|++++|++.+.+..... .+..+...+.+.|++++|+.+|+.+.+. -.-+...|..+...+...| +++
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 108 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAVGCYYLMVGHKNE 108 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHHHHHHHHSCSCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhhhhHH
Confidence 3445599999999999876543 6677888999999999999999999864 1235667888888899998 744
Q ss_pred hhhhHHHhhc-----cCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011102 250 VPFKLENFVS-----LASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDE 324 (493)
Q Consensus 250 ~~~~l~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~ 324 (493)
+++..+.. ..+..+|..+...|...|++++|.+.|++..+..- .+...+..+...+... |++++|.+.+++
T Consensus 109 --~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~-~~~~~A~~~~~~ 184 (330)
T 3hym_B 109 --HARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLT-NNSKLAERFFSQ 184 (330)
T ss_dssp --HHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHH-hhHHHHHHHHHH
Confidence 34433432 22456899999999999999999999999988642 2356677788889999 999999999999
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011102 325 LGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSG--------RDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396 (493)
Q Consensus 325 m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M 396 (493)
.... ...+...+..+...|.+.|++++|...|++..+.. ...+..+|..+...|.+.|++++|.+.+++.
T Consensus 185 al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 262 (330)
T 3hym_B 185 ALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262 (330)
T ss_dssp HHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9875 34567889999999999999999999999987531 1344678999999999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCCHH
Q 011102 397 EASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF-MASGRLA 457 (493)
Q Consensus 397 ~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~-~~~g~~~ 457 (493)
.+..- .+...+..+-..|.+.|++++|.+.|++..+.. +.+...+..+..++ ...|+.+
T Consensus 263 ~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 263 LVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 87532 356788999999999999999999999987543 23677788888777 4555543
No 20
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.53 E-value=7.2e-12 Score=129.10 Aligned_cols=197 Identities=11% Similarity=-0.000 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKV 344 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~ 344 (493)
+|..+...+.+.|++++|.++|+++.+.. |+..+|..+...+... |++++|...++.+... ...+...|..+...
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADR-NDSTEYYNYFDKALKL--DSNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTS-SCCTTGGGHHHHHHTT--CTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHC-CCHHHHHHHHHHHhhc--CcCCHHHHHHHHHH
Confidence 45555555666666666666666555543 3344555555555555 5555665555555443 12234455555555
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 011102 345 GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA 424 (493)
Q Consensus 345 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A 424 (493)
|.+.|++++|...|++..+.. +.+...|..+...|...|++++|.++++++.+.. ..+..++..+...|.+.|++++|
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 555555555555555554432 1234455555555555555555555555544321 11234445555555555555555
Q ss_pred HHHHHHHHHCCC-CCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHH
Q 011102 425 IRYFSKLKEAGF-CPT----YDIYRDMIRIFMA---SGRLAKCRDVCKEAEM 468 (493)
Q Consensus 425 ~~~~~~m~~~g~-~p~----~~ty~~li~~~~~---~g~~~~A~~l~~~m~~ 468 (493)
...|+.+.+..- .++ ...|..+...|.. .|++++|.+.+++..+
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 555555442110 011 2244555555555 5555555555555544
No 21
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.52 E-value=3.1e-12 Score=131.89 Aligned_cols=188 Identities=7% Similarity=-0.134 Sum_probs=159.1
Q ss_pred hcCCHHHHHHHHHHHHh-----CCCCC--------CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 011102 275 KGGNLKLAWKLLMVAKD-----GGRML--------DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341 (493)
Q Consensus 275 ~~g~~~~A~~l~~~m~~-----~g~~p--------d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~l 341 (493)
+.|++++|..+|+++.+ ..-.| +..+|..+...+... |++++|...|+++... . |+...+..+
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~-~--~~~~~~~~l 276 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK-NDPLGAHEDIKKAIEL-F--PRVNSYIYM 276 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS-SCHHHHHHHHHHHHHH-C--CCHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhh-C--ccHHHHHHH
Confidence 38999999999999988 32222 345677788889999 9999999999998876 2 348889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011102 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDI 421 (493)
Q Consensus 342 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~ 421 (493)
...|.+.|++++|.+.|++..+.. +.+...|..+...|...|++++|...+++..+... .+...+..+...|.+.|++
T Consensus 277 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 354 (514)
T 2gw1_A 277 ALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKF 354 (514)
T ss_dssp HHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCH
Confidence 999999999999999999988653 34677899999999999999999999999887643 2567888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 422 SRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 422 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
++|..+|+.+.+..- .+..+|..+...|.+.|++++|.+.++++.+.
T Consensus 355 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 355 DDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999986432 35678999999999999999999999998763
No 22
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.48 E-value=2.3e-10 Score=111.53 Aligned_cols=270 Identities=10% Similarity=-0.000 Sum_probs=210.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhc-----cCcHHHHHHHHHHH
Q 011102 199 LSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVS-----LASKGVLEATAKGF 273 (493)
Q Consensus 199 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~-----~~~~~~~~~li~~~ 273 (493)
+..+-..+.+.|++++|++.|+.+... -..+..++..+...+...|+++. ++..+.. ..+..+|..+...|
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~--A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKA--ALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHH--HHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 455667889999999999999999864 22357788899999999998554 4433433 22567899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHH------------HHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHH
Q 011102 274 VKGGNLKLAWKLLMVAKDGGRML----DPSIYAKL------------ILELGKNPDKYMLVMTLLDELGQRDDLNLSQQD 337 (493)
Q Consensus 274 ~~~g~~~~A~~l~~~m~~~g~~p----d~~t~~~l------------i~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~ 337 (493)
.+.|++++|.+.|++..+.. | +...+..+ ...+... |++++|.++++++.+. ...+...
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~--~~~~~~~ 156 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDG-ADYTAAITFLDKILEV--CVWDAEL 156 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHh--CCCchHH
Confidence 99999999999999998854 5 33344433 4677888 9999999999999875 3356788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHH-------
Q 011102 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD-LPAYR------- 409 (493)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd-~~ty~------- 409 (493)
+..+...|.+.|++++|.+.|++..+.. +.+..+|..+...|...|++++|.+.|++..+.. |+ ...+.
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHH
Confidence 9999999999999999999999998653 4578899999999999999999999999987643 33 23232
Q ss_pred -----HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcc-CHHHHH
Q 011102 410 -----VVIKLFVALNDISRAIRYFSKLKEAGFCPTY----DIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL-DKQTVV 479 (493)
Q Consensus 410 -----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~ 479 (493)
.+...+.+.|++++|...+++..+..-. +. ..|..+...|.+.|++++|.+.+++..+. .| +..+|.
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 310 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALK 310 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHH
Confidence 2256689999999999999999864422 22 23556778899999999999999999875 34 455555
Q ss_pred HHHH
Q 011102 480 ELLQ 483 (493)
Q Consensus 480 ~Ll~ 483 (493)
.+-.
T Consensus 311 ~~~~ 314 (359)
T 3ieg_A 311 DRAE 314 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.45 E-value=1.1e-11 Score=122.23 Aligned_cols=257 Identities=10% Similarity=-0.086 Sum_probs=191.7
Q ss_pred HHHhCCChHHHHH-HHHHHHhCCCCCC--CHHHHHHHHHHHHHcCCCchhhhHHHhhc-----cCcHHHHHHHHHHHHhc
Q 011102 205 ELGHMNLPERALQ-TFCWAQKQPHLFP--DDRLLASTVEVLARHHELKVPFKLENFVS-----LASKGVLEATAKGFVKG 276 (493)
Q Consensus 205 ~~~~~g~~~~A~~-l~~~m~~~~g~~p--d~~t~~~li~~~~~~g~~~~~~~l~~~~~-----~~~~~~~~~li~~~~~~ 276 (493)
.+...|++++|++ .|+.......-.| +...+..+...+.+.|+++. ++..+.. ..+..+|..+...|.+.
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN--AVLLFEAAVQQDPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH--HHHHHHHHHHSCTTCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3445688899998 8876553211122 34567788888999998544 4444433 23567899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHH---------------H
Q 011102 277 GNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTA---------------I 341 (493)
Q Consensus 277 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~---------------l 341 (493)
|++++|.+.|+++.+.. +.+..++..+...+... |++++|.+.++.+.... - .+...+.. .
T Consensus 112 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 112 EQELLAISALRRCLELK-PDNQTALMALAVSFTNE-SLQRQACEILRDWLRYT-P-AYAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTS-T-TTGGGCC---------------CT
T ss_pred cCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-c-CcHHHHHHHHHHhhhhcccHHHHH
Confidence 99999999999998864 34678899999999999 99999999999987751 1 11111111 2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011102 342 MKVGIRLQKFGVVESLFHWFTHSGRD-PTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALND 420 (493)
Q Consensus 342 i~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~ 420 (493)
+..+.+.|++++|...|+++.+..-. ++..+|..+...|.+.|++++|.+.|+++.+.. ..+..+|..+...|.+.|+
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCC
Confidence 44445899999999999999865322 158899999999999999999999999987753 2357889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 421 ISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 421 ~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
+++|...|++..+.. +.+...|..+...|.+.|++++|.+.|++..+.
T Consensus 267 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 267 SEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999988653 246788999999999999999999999998763
No 24
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.44 E-value=4.6e-11 Score=111.13 Aligned_cols=211 Identities=11% Similarity=-0.044 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 011102 263 KGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIM 342 (493)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li 342 (493)
..+|..+...|...|++++|.+.|+++.+.. ..+..++..+...+... |++++|.+.++++.+. ...+...+..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~--~~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTE-MEPKLADEEYRKALAS--DSRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH--CcCcHHHHHHHH
Confidence 4568888899999999999999999988753 33677888888899999 9999999999998775 234678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011102 343 KVGIRLQKFGVVESLFHWFTHSGRDP-TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDI 421 (493)
Q Consensus 343 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~ 421 (493)
..|.+.|++++|.++|++..+.+..| +...|..+...|...|++++|.+.|++..+.. ..+...+..+...|.+.|++
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999998644455 56788889999999999999999999987753 23578889999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHH
Q 011102 422 SRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVEL 481 (493)
Q Consensus 422 ~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~L 481 (493)
++|..+|+...+..- .+...+..+...+.+.|++++|.++++++.+. .|+...+..+
T Consensus 192 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~ 248 (252)
T 2ho1_A 192 VPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHH
T ss_pred HHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHH
Confidence 999999999886432 46788899999999999999999999999874 4555444433
No 25
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.43 E-value=6.5e-11 Score=122.82 Aligned_cols=282 Identities=8% Similarity=-0.049 Sum_probs=208.6
Q ss_pred hhccCCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCc
Q 011102 175 KGLDSHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELK 249 (493)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~ 249 (493)
..+.+.|++++|+..|.+....+ .|..+...|.+.|++++|++.|+.+.+. . ..+..++..+..++...|+++
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI-K-PDHSKALLRRASANESLGNFT 110 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-CchHHHHHHHHHHHHHcCCHH
Confidence 44556677777777777665432 6677777888888888888888887754 2 225667777777777777744
Q ss_pred hhhhHHHhhccC---c---------------------------------------HH-----------------------
Q 011102 250 VPFKLENFVSLA---S---------------------------------------KG----------------------- 264 (493)
Q Consensus 250 ~~~~l~~~~~~~---~---------------------------------------~~----------------------- 264 (493)
.+.. .|..+. + ..
T Consensus 111 ~A~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (537)
T 3fp2_A 111 DAMF--DLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188 (537)
T ss_dssp HHHH--HHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS
T ss_pred HHHH--HHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc
Confidence 4332 221110 0 00
Q ss_pred -------HHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCC--------HHHHHHHHHHHhcCCCCHHHHHHH
Q 011102 265 -------VLEATAKGFVK--------GGNLKLAWKLLMVAKDGGRMLD--------PSIYAKLILELGKNPDKYMLVMTL 321 (493)
Q Consensus 265 -------~~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~pd--------~~t~~~li~~~~~~~~~~~~a~~l 321 (493)
....+...+.. .|++++|..+|+++.+.. |+ ..+|..+-..+... |++++|...
T Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~ 265 (537)
T 3fp2_A 189 YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLK-NNLLDAQVL 265 (537)
T ss_dssp SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhc-ccHHHHHHH
Confidence 11222222221 247899999999988754 44 23456666777888 999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 011102 322 LDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401 (493)
Q Consensus 322 ~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi 401 (493)
|++.... .|+...|..+...|.+.|++++|.+.|++..+.. +.+..+|..+...|...|++++|.+.|++..+..-
T Consensus 266 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 341 (537)
T 3fp2_A 266 LQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341 (537)
T ss_dssp HHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 9999875 3668889999999999999999999999987653 34678899999999999999999999999887532
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 402 ~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
-+...|..+...|.+.|++++|..+|++..+.. ..+...|..+...|...|++++|.+.|+++.+.
T Consensus 342 -~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 342 -ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp -TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 245788899999999999999999999998654 235678899999999999999999999998753
No 26
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.43 E-value=1.1e-10 Score=105.91 Aligned_cols=214 Identities=10% Similarity=-0.083 Sum_probs=177.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 011102 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341 (493)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~l 341 (493)
+..+|..+...+...|++++|.+.|+++.+.. +.+...|..+...+... |++++|.+.+++.... ...+...+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~--~~~~~~~~~~l 82 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYL-KVNDKAQESFRQALSI--KPDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc-CChHHHHHHHHHHHHh--CCCChHHHHHH
Confidence 34568888999999999999999999988753 23577888888999999 9999999999998775 23467889999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 011102 342 MKVGIRL-QKFGVVESLFHWFTHSGRDPT-VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALN 419 (493)
Q Consensus 342 i~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g 419 (493)
...|... |++++|.+.|+++.+.+..|+ ...|..+...|...|++++|.+.++++.+... .+...+..+...+.+.|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcC
Confidence 9999999 999999999999987433444 67889999999999999999999999877532 34788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 011102 420 DISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482 (493)
Q Consensus 420 ~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll 482 (493)
++++|..+|++..+..-..+...+..+...+...|+.++|..+++.+.+. .|+...+..++
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l 222 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTVL 222 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHh
Confidence 99999999999886543247778888888999999999999999998753 46555554443
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.41 E-value=2.2e-11 Score=120.19 Aligned_cols=248 Identities=8% Similarity=-0.066 Sum_probs=192.3
Q ss_pred hhccCCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCc
Q 011102 175 KGLDSHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELK 249 (493)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~ 249 (493)
..+.+.|++++|+..|.+..... .|..+...|.+.|++++|++.|+.+... . ..+..+|..+...+.+.|+++
T Consensus 73 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~~~~l~~~~~~~g~~~ 150 (365)
T 4eqf_A 73 LKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL-Q-PNNLKALMALAVSYTNTSHQQ 150 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHccccHH
Confidence 34456699999999999876543 7888999999999999999999999864 2 235778999999999999855
Q ss_pred hhhhHHHhhccC----c-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhcCCC
Q 011102 250 VPFKLENFVSLA----S-----------KGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRM-LDPSIYAKLILELGKNPD 313 (493)
Q Consensus 250 ~~~~l~~~~~~~----~-----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~li~~~~~~~~ 313 (493)
. ++..+.... + ..++..+...|.+.|++++|.++|+++.+..-. ++..+|..+...|.+. |
T Consensus 151 ~--A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~-g 227 (365)
T 4eqf_A 151 D--ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS-G 227 (365)
T ss_dssp H--HHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH-T
T ss_pred H--HHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC-C
Confidence 4 443343321 1 123445688999999999999999999986422 2688999999999999 9
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 011102 314 KYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVV 393 (493)
Q Consensus 314 ~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 393 (493)
++++|.+.|++..+. ...+..+|+.+...|.+.|++++|.+.|++..+.. +.+..+|..+...|.+.|++++|.+.|
T Consensus 228 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 304 (365)
T 4eqf_A 228 EFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNF 304 (365)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999998875 33468899999999999999999999999987652 335889999999999999999999999
Q ss_pred HHHHHCC---CC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011102 394 WNMEASN---CL--------FDLPAYRVVIKLFVALNDISRAIRYFSK 430 (493)
Q Consensus 394 ~~M~~~g---i~--------pd~~ty~~li~~~~~~g~~~~A~~~~~~ 430 (493)
+++.+.. .. .+...|..+-.++...|+.+.|.++.+.
T Consensus 305 ~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 305 LTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9987532 11 1357889999999999999998887654
No 28
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.40 E-value=2.5e-10 Score=118.34 Aligned_cols=196 Identities=12% Similarity=0.030 Sum_probs=98.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 011102 266 LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVG 345 (493)
Q Consensus 266 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~ 345 (493)
|..+-..+...|++++|.+.|++..+.. |+..+|..+-..+... |++++|...+++.... ...+..+|..+...|
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 320 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADK-ENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMY 320 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCS-SCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHh-cCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHH
Confidence 4444444555555555555555555432 4444444444455555 5555555555554443 112344455555555
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-------
Q 011102 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL------- 418 (493)
Q Consensus 346 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~------- 418 (493)
.+.|++++|.+.|++..+.. +.+...|..+...|...|++++|.+.++++.+.. ..+...+..+...|.+.
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHH
Confidence 55555555555555544332 1123444455555555555555555555544331 11223444444444444
Q ss_pred -------------------------------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011102 419 -------------------------------------------NDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455 (493)
Q Consensus 419 -------------------------------------------g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~ 455 (493)
|++++|...|+...+.. ..+...|..+...|.+.|+
T Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc
Confidence 55555555555554332 1245666667777777777
Q ss_pred HHHHHHHHHHHHHC
Q 011102 456 LAKCRDVCKEAEMA 469 (493)
Q Consensus 456 ~~~A~~l~~~m~~~ 469 (493)
+++|.+.|++..+.
T Consensus 478 ~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 478 IDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777776653
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.40 E-value=1.1e-10 Score=112.03 Aligned_cols=258 Identities=14% Similarity=0.056 Sum_probs=183.3
Q ss_pred CCCHHHHHHHHhhhcccC------cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhh
Q 011102 180 HKDVAEVLDKCGRFLRKG------SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFK 253 (493)
Q Consensus 180 ~~~~~~a~~~~~~m~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~ 253 (493)
.|....|+.......... ..-.+..+|...|+++.|+..++. .-.|+..++..+...+...++ ..++
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~~~--~~~A 84 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASHSR--RDAI 84 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCSTT--HHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCCCc--HHHH
Confidence 477777777766543332 223456788888888888876643 234566677888888887776 4444
Q ss_pred HHHhhcc------C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 011102 254 LENFVSL------A-SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELG 326 (493)
Q Consensus 254 l~~~~~~------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~ 326 (493)
+..+..+ | +...+..+-..|.+.|++++|++.|++ ..+...+..+...+.+. |++++|.+.|+.+.
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~-g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKL-DRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
Confidence 4444331 3 445667777888999999999999987 46788888889999999 99999999999988
Q ss_pred hcCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 011102 327 QRDDLNLSQQDC---TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF 403 (493)
Q Consensus 327 ~~~g~~p~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~p 403 (493)
+. .|+.... ..++..+...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++|.+.|++..+.. +-
T Consensus 158 ~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 158 DQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred hh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 75 2553221 22334444558899999999999876 35688889999999999999999999999977643 23
Q ss_pred CHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011102 404 DLPAYRVVIKLFVALNDISR-AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRD 461 (493)
Q Consensus 404 d~~ty~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 461 (493)
+..++..++..+...|+.++ +.++++++.+.. |+... +.+...+.+.++++..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHH
Confidence 56788889999999999876 578888887543 43322 3334445555555543
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.40 E-value=3.4e-11 Score=116.14 Aligned_cols=247 Identities=9% Similarity=-0.071 Sum_probs=194.4
Q ss_pred hccCCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCch
Q 011102 176 GLDSHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKV 250 (493)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~ 250 (493)
.+...|++++|+..+.+..... .|..+...+.+.|++++|++.|+.+... ...+..++..+...+...|+++.
T Consensus 30 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~ 107 (327)
T 3cv0_A 30 SMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNANA 107 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 4456789999999999776543 6777888999999999999999999864 23367788899999999998554
Q ss_pred hhhHHHhhcc----C-cHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 011102 251 PFKLENFVSL----A-SKGVLEAT--------------AK-GFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK 310 (493)
Q Consensus 251 ~~~l~~~~~~----~-~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~ 310 (493)
+. ..+... + +...+..+ .. .+...|++++|.+.++++.+.. +.+..++..+...+.+
T Consensus 108 A~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 184 (327)
T 3cv0_A 108 AL--ASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNL 184 (327)
T ss_dssp HH--HHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 43 333321 1 11122222 22 3778899999999999998764 2367888999999999
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 011102 311 NPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390 (493)
Q Consensus 311 ~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 390 (493)
. |++++|.+.+++..+. ...+...+..+...|.+.|++++|.+.|++..+.. +.+..+|..+...|.+.|++++|.
T Consensus 185 ~-~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 185 S-NNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp T-TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred h-ccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 9 9999999999998875 23467889999999999999999999999987653 346888999999999999999999
Q ss_pred HHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 391 TVVWNMEASNCLF-----------DLPAYRVVIKLFVALNDISRAIRYFSKL 431 (493)
Q Consensus 391 ~l~~~M~~~gi~p-----------d~~ty~~li~~~~~~g~~~~A~~~~~~m 431 (493)
+.+++..+..... +..+|..+...+.+.|+.++|..+++..
T Consensus 261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999987643221 4678999999999999999999998643
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.3e-10 Score=107.88 Aligned_cols=235 Identities=11% Similarity=-0.011 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHHcCCCchhhhHHHhhcc----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC----HHHHH
Q 011102 233 RLLASTVEVLARHHELKVPFKLENFVSL----ASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGG--RMLD----PSIYA 302 (493)
Q Consensus 233 ~t~~~li~~~~~~g~~~~~~~l~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd----~~t~~ 302 (493)
..|..+-..+...|+++.+... +... .+..+|..+...|...|++++|.+.|++..+.. ..++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEH--YNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH--HHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHH--HHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 4566777777777875443332 2211 456678888888888888888888888776632 1122 46777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 011102 303 KLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS 382 (493)
Q Consensus 303 ~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~ 382 (493)
.+...+.+. |++++|...|++.... .|+. ..+.+.|++++|.+.+++..... +.+...|..+...+..
T Consensus 84 ~l~~~~~~~-~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 84 RIGNAYHKL-GDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-ccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 777788888 8888888888887764 2342 34666777888888888877542 2345778899999999
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011102 383 EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDV 462 (493)
Q Consensus 383 ~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 462 (493)
.|++++|.+.+++..+..- .+..+|..+...|.+.|++++|...|++..+.. ..+...|..+...|.+.|++++|.+.
T Consensus 152 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999887532 367889999999999999999999999998654 23588899999999999999999999
Q ss_pred HHHHHHCC----CccCHHHHHHHHH
Q 011102 463 CKEAEMAG----FKLDKQTVVELLQ 483 (493)
Q Consensus 463 ~~~m~~~g----~~pd~~t~~~Ll~ 483 (493)
+++..+.. ..|+......++.
T Consensus 230 ~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 230 LDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHhChhhcCCCchHHHHHHHH
Confidence 99987642 2366655544444
No 32
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.31 E-value=2.8e-10 Score=104.80 Aligned_cols=210 Identities=10% Similarity=-0.022 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 011102 263 KGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIM 342 (493)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li 342 (493)
..+|..+...+.+.|++++|..+|+++.+.. ..+...+..+...+... |++++|.+.+++..+. ...+...+..+.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~--~~~~~~~~~~la 98 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSV-NELERALAFYDKALEL--DSSAATAYYGAG 98 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence 3457778888899999999999999998753 23577888888889999 9999999999998775 234678889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 011102 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422 (493)
Q Consensus 343 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~ 422 (493)
..|.+.|++++|.+.|++..+.. +.+...|..+...|.+.|++++|.+.++++.+.. ..+...+..+...+.+.|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999987654 3467889999999999999999999999987653 236778889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcc-CHHHHHHH
Q 011102 423 RAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKL-DKQTVVEL 481 (493)
Q Consensus 423 ~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~L 481 (493)
+|...|++..+..- .+..+|..+...|.+.|++++|.+.+++..+. .| +...+..+
T Consensus 177 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~ 233 (243)
T 2q7f_A 177 EALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchHHHHHHH
Confidence 99999999886542 36788999999999999999999999999874 34 34444433
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.30 E-value=5.1e-10 Score=102.30 Aligned_cols=198 Identities=10% Similarity=-0.035 Sum_probs=155.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 011102 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341 (493)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~l 341 (493)
+...|..+-..+.+.|++++|...|++..+.. +-+...|..+-..+.+. |++++|...+++..+. -.-+...+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKL-GLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 34567778888999999999999999998754 23567788888889999 9999999999998775 22356788888
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011102 342 MKVGIRL-----------QKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV 410 (493)
Q Consensus 342 i~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~ 410 (493)
-..|.+. |++++|...|++..+.. +-+...|..+-..|...|++++|++.|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 8999999 99999999999987652 2357889999999999999999999999998877 78889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 411 VIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 411 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
+-..|...|++++|...|+...+..- -+...+..+...+.+.|++++|.+.|++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999986542 367888899999999999999999988754
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.30 E-value=1.1e-09 Score=101.43 Aligned_cols=217 Identities=10% Similarity=0.002 Sum_probs=175.0
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhcc----Cc--------HHH
Q 011102 198 SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSL----AS--------KGV 265 (493)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~----~~--------~~~ 265 (493)
.|..+-..+.+.|++++|++.|+.+.+. . .+..+|..+...+...|+++.+. ..+... ++ ..+
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~~~~~~~~~~~~~~~~A~--~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWEL-H--KDITYLNNRAAAEYEKGEYETAI--STLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-S--CCTHHHHHHHHHHHHTTCHHHHH--HHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-h--ccHHHHHHHHHHHHHcccHHHHH--HHHHHHHHhCcccccchHHHHHH
Confidence 4556667888889999999999988876 4 67788888888888888854433 333221 11 467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 011102 266 LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVG 345 (493)
Q Consensus 266 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~ 345 (493)
|..+...|.+.|++++|.+.|++..+.. |+..+ +.+. |++++|...++.+... ...+...+..+...|
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~-------~~~~-~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTADI-------LTKL-RNAEKELKKAEAEAYV--NPEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHH-------HHHH-HHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--chhHH-------HHHH-hHHHHHHHHHHHHHHc--CcchHHHHHHHHHHH
Confidence 8999999999999999999999998843 56433 4455 8899999999998765 223456788889999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011102 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAI 425 (493)
Q Consensus 346 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~ 425 (493)
.+.|++++|.+.|++..+.. +.+...|..+...|.+.|++++|.+.|++..+.. ..+...|..+-..|.+.|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999987653 3468899999999999999999999999987753 235788999999999999999999
Q ss_pred HHHHHHHH
Q 011102 426 RYFSKLKE 433 (493)
Q Consensus 426 ~~~~~m~~ 433 (493)
..|+...+
T Consensus 228 ~~~~~a~~ 235 (258)
T 3uq3_A 228 ETLDAART 235 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998774
No 35
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.23 E-value=1.4e-09 Score=102.11 Aligned_cols=222 Identities=10% Similarity=-0.036 Sum_probs=97.2
Q ss_pred hCCChHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcCCHHHHHHH
Q 011102 208 HMNLPERALQTFCWAQKQPHLFP--DDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKL 285 (493)
Q Consensus 208 ~~g~~~~A~~l~~~m~~~~g~~p--d~~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 285 (493)
..|++++|++.|+.+.+.....+ +..+|..+...+... |++++|.+.
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------------------~~~~~A~~~ 65 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL-------------------------------GLRALARND 65 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT-------------------------------TCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHc-------------------------------ccHHHHHHH
Confidence 45778899999998886511111 223344444444444 444444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011102 286 LMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSG 365 (493)
Q Consensus 286 ~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 365 (493)
|++..+.. +.+..+|..+...+... |++++|...|++.... ...+...+..+...|.+.|++++|.+.|+++.+.
T Consensus 66 ~~~al~~~-~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~- 140 (275)
T 1xnf_A 66 FSQALAIR-PDMPEVFNYLGIYLTQA-GNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD- 140 (275)
T ss_dssp HHHHHHHC-CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-
Confidence 44444422 11334444444444444 4455555554444432 1112344444444444555555555555444432
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C-CHHH
Q 011102 366 RDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC--P-TYDI 442 (493)
Q Consensus 366 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p-~~~t 442 (493)
.|+...+...+..+...|+.++|...+.+..... .++...+ .++..+...++.++|...++...+.... | +..+
T Consensus 141 -~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (275)
T 1xnf_A 141 -DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSET 217 (275)
T ss_dssp -CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred -CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHH
Confidence 2222222223333333444555555444433321 1121222 2333344444444444444444321110 0 1234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 443 YRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 443 y~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
|..+...|.+.|++++|.+.|++..+
T Consensus 218 ~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 218 NFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444445555555555555554443
No 36
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.22 E-value=3.2e-08 Score=93.17 Aligned_cols=221 Identities=12% Similarity=-0.052 Sum_probs=177.1
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHh--
Q 011102 198 SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVK-- 275 (493)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~-- 275 (493)
.+..+-..|.+.|++++|++.|+...+. + + ...+..+-..|..
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~---~-------------------------------~~a~~~lg~~~~~g~ 52 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDL-K---E-------------------------------NSGCFNLGVLYYQGQ 52 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT-T---C-------------------------------HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC-C---C-------------------------------HHHHHHHHHHHHcCC
Confidence 3444555666777777777777766642 1 1 1233344455555
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----CCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH--
Q 011102 276 --GGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK----NPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR-- 347 (493)
Q Consensus 276 --~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~----~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~-- 347 (493)
.+++++|.+.|++..+.+ +...+..+-..|.. . +++++|...|++..+. + +...+..+-..|.+
T Consensus 53 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 53 GVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVS-QNTNKALQYYSKACDL-K---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCS
T ss_pred CcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcc-cCHHHHHHHHHHHHHc-C---CccHHHHHHHHHHcCC
Confidence 788999999999998876 77788888788887 8 9999999999998876 3 77888888889998
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----
Q 011102 348 --LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS----EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA---- 417 (493)
Q Consensus 348 --~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~---- 417 (493)
.+++++|.+.|++..+.+ +...+..+-..|.. .++.++|.+.|++..+.+ +...+..+-..|.+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSS
T ss_pred CcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 999999999999988765 67778888888887 899999999999988764 46778888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 011102 418 LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA----SGRLAKCRDVCKEAEMAG 470 (493)
Q Consensus 418 ~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g 470 (493)
.+++++|...|+...+.+ +...+..+-..|.+ .+++++|.+.|++..+.|
T Consensus 199 ~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 199 TKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 999999999999988765 36677888888888 899999999999998865
No 37
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=4.7e-10 Score=107.18 Aligned_cols=203 Identities=11% Similarity=0.050 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhc------CCC
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDG-------GRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQR------DDL 331 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~------~g~ 331 (493)
+|..+...|...|++++|..+|+++.+. .......++..+-..|... |++++|...+++.... ...
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-NKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4555555666666666666666555542 1112233445555555555 6666666666554432 111
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----
Q 011102 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHS------GRDP-TVVMYTTLIHSRLSEKKCREALTVVWNMEAS----- 399 (493)
Q Consensus 332 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----- 399 (493)
......+..+...|...|++++|.+.|++..+. +-.| ....|..+...|...|++++|.+.++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 122344555555666666666666666555432 1112 2344555556666666666666666655442
Q ss_pred -CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------------------------------------------
Q 011102 400 -NCLFD-LPAYRVVIKLFVALNDISRAIRYFSKLKEA------------------------------------------- 434 (493)
Q Consensus 400 -gi~pd-~~ty~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------------------- 434 (493)
+-.|+ ..++..+...|.+.|++++|..+|++..+.
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 11121 234555555566666666666666555431
Q ss_pred -----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 435 -----GFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 435 -----g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
.-..+..+|..+...|.+.|++++|.++|++..+
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1123456788999999999999999999998764
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.21 E-value=1.2e-08 Score=94.66 Aligned_cols=200 Identities=15% Similarity=-0.018 Sum_probs=160.0
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcC
Q 011102 198 SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGG 277 (493)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g 277 (493)
.|..+...+...|++++|++.|+.+... .|+ +..+|..+...|.+.|
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~------------------------------~~~~~~~la~~~~~~~ 85 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEI---DPS------------------------------SADAHAALAVVFQTEM 85 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHH---CTT------------------------------CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc---CCC------------------------------hHHHHHHHHHHHHHcC
Confidence 5666777788888888888888877653 111 2235666777788889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 011102 278 NLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNL-SQQDCTAIMKVGIRLQKFGVVES 356 (493)
Q Consensus 278 ~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~ 356 (493)
++++|.+.|+++.+.. ..+...|..+...+... |++++|.++++++... +..| +...+..+...|.+.|++++|.+
T Consensus 86 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 86 EPKLADEEYRKALASD-SRNARVLNNYGGFLYEQ-KRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHH-hHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999888754 23677888888889999 9999999999998773 3445 45678888899999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 011102 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435 (493)
Q Consensus 357 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g 435 (493)
.|++..+.. +.+...|..+...|...|++++|.+.++++.+.. ..+...+..+...+.+.|+.++|.++++.+.+..
T Consensus 163 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 163 YFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999987653 3467889999999999999999999999987643 2466778888899999999999999999988653
No 39
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.20 E-value=9.2e-09 Score=93.06 Aligned_cols=200 Identities=11% Similarity=-0.050 Sum_probs=123.1
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcC
Q 011102 198 SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGG 277 (493)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g 277 (493)
.|..+...+...|++++|++.|+.+.+. . ..+.. +|..+...|...|
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~-------------------------------~~~~l~~~~~~~~ 56 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKS-D-PKNEL-------------------------------AWLVRAEIYQYLK 56 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHH-------------------------------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHh-C-ccchH-------------------------------HHHHHHHHHHHcC
Confidence 4566677788888888888888877653 1 11222 3444555556666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 011102 278 NLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS-QQDCTAIMKVGIRLQKFGVVES 356 (493)
Q Consensus 278 ~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~ 356 (493)
++++|.+.|+++.+.. ..+..++..+...+....|++++|...++++... +..|+ ...+..+...|.+.|++++|.+
T Consensus 57 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 57 VNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666665532 1244455555555544425667777777766652 22232 4556666667777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 357 LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433 (493)
Q Consensus 357 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 433 (493)
.|++..+.. +.+...|..+...|.+.|++++|.+.++++.+..-..+...+..+...+.+.|+.++|..+++.+.+
T Consensus 135 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 135 YLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 777665442 2246666777777777777777777777765542213555666666666777777777777777654
No 40
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.18 E-value=1.3e-07 Score=98.45 Aligned_cols=163 Identities=10% Similarity=0.034 Sum_probs=115.5
Q ss_pred HHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHH
Q 011102 317 LVMTLLDELGQRDDLNL-SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT--VVMYTTLIHSRLSEKKCREALTVV 393 (493)
Q Consensus 317 ~a~~l~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~ 393 (493)
+|..+|++..+. +.| +...|..+...+.+.|++++|..+|++..+. .|+ ...|...+..+.+.|+.++|.++|
T Consensus 304 ~A~~~~~~Al~~--~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 304 EAANIYERAIST--LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHTTT--TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777777777652 233 4777888888888888888888888888764 453 357888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-C
Q 011102 394 WNMEASNCLFDLPAYRVVIK-LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG-F 471 (493)
Q Consensus 394 ~~M~~~gi~pd~~ty~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~ 471 (493)
++..+..- .+...|..... .+...|+.++|..+|+...+.. .-+...|..+++.+.+.|+.++|..+|++....+ .
T Consensus 380 ~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 380 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 88776421 12222222221 2336889999999999877532 2257888899999999999999999999988764 3
Q ss_pred ccC--HHHHHHHHHhh
Q 011102 472 KLD--KQTVVELLQIE 485 (493)
Q Consensus 472 ~pd--~~t~~~Ll~~~ 485 (493)
.|+ ...|...++.+
T Consensus 458 ~~~~~~~lw~~~~~~e 473 (530)
T 2ooe_A 458 PPEKSGEIWARFLAFE 473 (530)
T ss_dssp CGGGCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 343 44676666653
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.16 E-value=1.5e-09 Score=101.82 Aligned_cols=242 Identities=11% Similarity=0.007 Sum_probs=177.5
Q ss_pred cCCCCHHHHHHHHhhhccc---------CcHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCC
Q 011102 178 DSHKDVAEVLDKCGRFLRK---------GSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHEL 248 (493)
Q Consensus 178 ~~~~~~~~a~~~~~~m~~~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~ 248 (493)
...+++++|+..+.+.... ..|..+...|...|++++|+..|+.+... .|+
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~----------------- 75 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI---RPD----------------- 75 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCC-----------------
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc---CCC-----------------
Confidence 3457778888888866653 16777888999999999999999988754 122
Q ss_pred chhhhHHHhhccCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 011102 249 KVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQR 328 (493)
Q Consensus 249 ~~~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~ 328 (493)
+..+|..+...|.+.|++++|.+.|++..+.. +.+..+|..+...+.+. |++++|...|+++.+.
T Consensus 76 -------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 76 -------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYG-GRDKLAQDDLLAFYQD 140 (275)
T ss_dssp -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred -------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHh-ccHHHHHHHHHHHHHh
Confidence 22345566777888888999999999888753 22567888888899999 9999999999998765
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC--C-CH
Q 011102 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCL--F-DL 405 (493)
Q Consensus 329 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~--p-d~ 405 (493)
.|+.......+..+.+.|++++|...|++..... .++...|+ ++..+...++.++|.+.+.+..+.... | +.
T Consensus 141 ---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 215 (275)
T 1xnf_A 141 ---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLS 215 (275)
T ss_dssp ---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred ---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhccccccccccc
Confidence 3554555556666677899999999998776543 34444444 777788888899999999887654211 1 14
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011102 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVC 463 (493)
Q Consensus 406 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 463 (493)
.+|..+-..|.+.|++++|...|++..+.. |+. +.....++...|++++|.+-+
T Consensus 216 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 216 ETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 778888999999999999999999998653 422 333455677888888887765
No 42
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.16 E-value=2.2e-08 Score=111.05 Aligned_cols=247 Identities=11% Similarity=0.098 Sum_probs=171.9
Q ss_pred cCCCCHHHHHHHHhhhcccCcHHHHHHHHH-hCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHH
Q 011102 178 DSHKDVAEVLDKCGRFLRKGSLSFTVRELG-HMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLEN 256 (493)
Q Consensus 178 ~~~~~~~~a~~~~~~m~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~ 256 (493)
...+.+++|..+|++.. .+...+..+. +.|++++|.++.+... +..+|..+-.++.+.|+ ..+|+..
T Consensus 1060 i~lglyEEAf~IYkKa~---~~~~A~~VLie~i~nldrAiE~Aervn-------~p~vWsqLAKAql~~G~--~kEAIds 1127 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD---VNTSAVQVLIEHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGM--VKEAIDS 1127 (1630)
T ss_pred HhCCCHHHHHHHHHHcC---CHHHHHHHHHHHHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCC--HHHHHHH
Confidence 34577777777777643 2222223222 5667777777776442 35567777777777777 5566666
Q ss_pred hhccCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHH
Q 011102 257 FVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQ 336 (493)
Q Consensus 257 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~ 336 (493)
|..-.+...|.-++..|.+.|++++|.+.|...++.. +++...+.+..+|++. +++++...+. . .++..
T Consensus 1128 YiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl-~rleele~fI----~----~~n~a 1196 (1630)
T 1xi4_A 1128 YIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKT-NRLAELEEFI----N----GPNNA 1196 (1630)
T ss_pred HHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhh-cCHHHHHHHH----h----CCCHH
Confidence 7777777777778888888888888888887666544 3433344577777887 7777533332 2 24556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~ 416 (493)
.|..+-+.|...|++++|..+|... ..|..+...|++.|++++|.+.+++. -+..+|.-+-.+|.
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence 6667777788888888888888763 36888888888888888888888765 35577777777787
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 417 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
..|++..|...... +..+...+..++.-|.+.|.+++|..+++.-.
T Consensus 1262 e~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred hhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77877777776543 33466778899999999999999999997665
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.16 E-value=5.8e-08 Score=91.39 Aligned_cols=193 Identities=10% Similarity=-0.016 Sum_probs=167.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----CCCCHHHHHHHHHHHhhcCCCCCCHHH
Q 011102 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK----NPDKYMLVMTLLDELGQRDDLNLSQQD 337 (493)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~----~~~~~~~a~~l~~~m~~~~g~~p~~~~ 337 (493)
+..++..+-..|.+.|++++|.+.|++..+.+ +...+..+-..|.. . +++++|...|++..+. + +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~-~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVE-KNLKKAASFYAKACDL-N---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHT-T---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcC-CCHHHHHHHHHHHHHC-C---CHHH
Confidence 34566777888899999999999999999843 56677777778887 8 9999999999999876 4 7888
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011102 338 CTAIMKVGIR----LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS----EKKCREALTVVWNMEASNCLFDLPAYR 409 (493)
Q Consensus 338 ~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~M~~~gi~pd~~ty~ 409 (493)
+..+-..|.. .+++++|.+.|++..+.+ +..++..+-..|.. .++.++|++.|++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 8999999999 999999999999998765 78889999999999 999999999999998876 567778
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCC
Q 011102 410 VVIKLFVA----LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA----SGRLAKCRDVCKEAEMAGF 471 (493)
Q Consensus 410 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 471 (493)
.+-..|.. .++.++|...|++..+.+ +...+..+-..|.. .+++++|.+.|++..+.+-
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 88888888 999999999999998764 56788888899999 9999999999999988753
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.14 E-value=2.7e-08 Score=93.20 Aligned_cols=237 Identities=11% Similarity=-0.047 Sum_probs=171.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcCCHH
Q 011102 201 FTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLK 280 (493)
Q Consensus 201 ~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g~~~ 280 (493)
..-..+.+.|++++|+..|+...+. .|+ +..+|..+...|.+.|+++
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~---~p~------------------------------~~~~~~~l~~~~~~~~~~~ 54 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAK---KYN------------------------------SPYIYNRRAVCYYELAKYD 54 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHT---TCC------------------------------CSTTHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh---CCC------------------------------cHHHHHHHHHHHHHHhhHH
Confidence 3455677888899999998888754 222 1113445666777888899
Q ss_pred HHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011102 281 LAWKLLMVAKDGGRMLD--PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLF 358 (493)
Q Consensus 281 ~A~~l~~~m~~~g~~pd--~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 358 (493)
+|.+.|++..+.+-.++ ..+|..+-..+... |++++|...|+...+. ..-+...|..+...|.+.|++++|.+.|
T Consensus 55 ~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 131 (272)
T 3u4t_A 55 LAQKDIETYFSKVNATKAKSADFEYYGKILMKK-GQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYM 131 (272)
T ss_dssp HHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 99999998888442222 33477788888888 9999999999988765 2235578888899999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC
Q 011102 359 HWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALND---ISRAIRYFSKLKEAG 435 (493)
Q Consensus 359 ~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~---~~~A~~~~~~m~~~g 435 (493)
++..+. .+.+...|..+...+...+++++|.+.|++..+..- .+...+..+-..+...|+ .++|...|++..+..
T Consensus 132 ~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 132 EKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp GGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred HHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 887755 234566677776344445699999999998876421 235677777778888887 788888888776321
Q ss_pred -CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHH
Q 011102 436 -FCPT------YDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477 (493)
Q Consensus 436 -~~p~------~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 477 (493)
-.|+ ...|..+-..|.+.|++++|.+.|++..+. .|+...
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 256 (272)
T 3u4t_A 210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNKK 256 (272)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHH
Confidence 1233 257888888999999999999999999874 454443
No 45
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.12 E-value=1.3e-06 Score=89.73 Aligned_cols=145 Identities=9% Similarity=0.018 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---
Q 011102 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRL-----QKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK--- 384 (493)
Q Consensus 313 ~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g--- 384 (493)
++.++|...|+...+. | +...+..+-..|... ++.++|...|++..+.| +...+..|-..|...|
T Consensus 273 ~d~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~ 345 (490)
T 2xm6_A 273 KEPLKALEWYRKSAEQ-G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEE 345 (490)
T ss_dssp CCHHHHHHHHHHHHTT-T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHH
T ss_pred CCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcc
Confidence 4444444444444332 1 233333344444443 44445555444444332 2333444444444333
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCH
Q 011102 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVA----LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA----SGRL 456 (493)
Q Consensus 385 ~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~ 456 (493)
+.++|.+.|++..+.| +...+..|-..|.. .++.++|..+|+...+.| +...+..|-..|.+ .++.
T Consensus 346 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 346 EHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred cHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 4444555554444432 33344444444444 445555555555544433 23444444444444 4555
Q ss_pred HHHHHHHHHHHHCC
Q 011102 457 AKCRDVCKEAEMAG 470 (493)
Q Consensus 457 ~~A~~l~~~m~~~g 470 (493)
++|.+.|++..+.|
T Consensus 420 ~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 420 VQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC
Confidence 55555555554433
No 46
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.10 E-value=7.9e-07 Score=91.40 Aligned_cols=271 Identities=11% Similarity=0.002 Sum_probs=217.0
Q ss_pred ccCCCCHHHHHHHHhhhcccC---cHHHHHHHHHh----CCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH----c
Q 011102 177 LDSHKDVAEVLDKCGRFLRKG---SLSFTVRELGH----MNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLAR----H 245 (493)
Q Consensus 177 ~~~~~~~~~a~~~~~~m~~~~---~~~~li~~~~~----~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~----~ 245 (493)
.+..++.++|+..|.+..+.+ .+..+-..|.. .+++++|++.|+...+. | +...+..+-..|.. .
T Consensus 89 ~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 89 EGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-G---RDSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCC
Confidence 344789999999999877766 45556667777 88999999999999876 5 56667777777766 3
Q ss_pred CCCchhhhHHHhhc---cCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----CCCC
Q 011102 246 HELKVPFKLENFVS---LASKGVLEATAKGFVK----GGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGK----NPDK 314 (493)
Q Consensus 246 g~~~~~~~l~~~~~---~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~----~~~~ 314 (493)
++ ..+++..|.. ..+...+..|-..|.+ .++.++|.+.|++..+.| +...+..+-..|.. . ++
T Consensus 165 ~d--~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~-~~ 238 (490)
T 2xm6_A 165 RD--YVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVT-QD 238 (490)
T ss_dssp CC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC-CC
T ss_pred CC--HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC-CC
Confidence 44 5555554543 3467788888888888 899999999999999876 66777777777765 5 89
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-----CC
Q 011102 315 YMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR----LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE-----KK 385 (493)
Q Consensus 315 ~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~-----g~ 385 (493)
+++|..+|+...+. + +...+..+-..|.. .++.++|.+.|++..+.| +...+..|-..|... ++
T Consensus 239 ~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQ-G---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp HHHHHHHHHHHHTT-T---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCC
T ss_pred HHHHHHHHHHHHHC-C---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCC
Confidence 99999999998776 2 45677777777877 899999999999988654 566777888888877 89
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 011102 386 CREALTVVWNMEASNCLFDLPAYRVVIKLFVALN---DISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA----SGRLAK 458 (493)
Q Consensus 386 ~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~ 458 (493)
.++|.+.|++..+.| +...+..+-..|.+.| +.++|.++|+...+.| +...+..|-..|.. .+++++
T Consensus 312 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 385 (490)
T 2xm6_A 312 REQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQ 385 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 999999999998875 4566777777777766 8899999999998874 67788888888988 899999
Q ss_pred HHHHHHHHHHCC
Q 011102 459 CRDVCKEAEMAG 470 (493)
Q Consensus 459 A~~l~~~m~~~g 470 (493)
|.+.|++..+.|
T Consensus 386 A~~~~~~A~~~~ 397 (490)
T 2xm6_A 386 AAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999999876
No 47
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.08 E-value=6.3e-09 Score=103.98 Aligned_cols=265 Identities=11% Similarity=-0.038 Sum_probs=182.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHHcCCCchhhhHH-----Hhhcc----CcHHHHHH
Q 011102 202 TVRELGHMNLPERALQTFCWAQKQPHLFPDD----RLLASTVEVLARHHELKVPFKLE-----NFVSL----ASKGVLEA 268 (493)
Q Consensus 202 li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~----~t~~~li~~~~~~g~~~~~~~l~-----~~~~~----~~~~~~~~ 268 (493)
+-..+.+.|++++|++.|+.+.+. .-. +. ..|..+...+...|+++.+.... ..... ....+|..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~-~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQA-GTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHh-ccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 344566677777777777777653 111 22 35666666666667644333221 11111 12346888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhcCCCC-----------------HHHHHHHHHHHh
Q 011102 269 TAKGFVKGGNLKLAWKLLMVAKDG----GRML-DPSIYAKLILELGKNPDK-----------------YMLVMTLLDELG 326 (493)
Q Consensus 269 li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~t~~~li~~~~~~~~~-----------------~~~a~~l~~~m~ 326 (493)
+...|...|++++|.+.|++..+. +-.+ ...++..+-..|... |+ +++|.+.+++..
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK-GKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc-CcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 889999999999999999887653 1111 234667777788888 88 899998888754
Q ss_pred hc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011102 327 QR----DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGR-DPT----VVMYTTLIHSRLSEKKCREALTVVWNME 397 (493)
Q Consensus 327 ~~----~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~ty~~li~~~~~~g~~~~A~~l~~~M~ 397 (493)
.. +........+..+-..|...|++++|.+.|++..+..- .++ ..+|..+...|...|++++|.+.+++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 32 01111234778888899999999999999998764210 112 3478899999999999999999999876
Q ss_pred HCC----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 398 ASN----CL-FDLPAYRVVIKLFVALNDISRAIRYFSKLKEA----GF-CPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 398 ~~g----i~-pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
+.. -. ....++..+-..|...|++++|..+|++..+. +- .....+|..+...|.+.|++++|.+.+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 531 11 11467788888999999999999999987632 11 1124578889999999999999999999987
Q ss_pred HC
Q 011102 468 MA 469 (493)
Q Consensus 468 ~~ 469 (493)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.07 E-value=1.9e-08 Score=92.29 Aligned_cols=199 Identities=10% Similarity=-0.047 Sum_probs=141.7
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcC
Q 011102 198 SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGG 277 (493)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g 277 (493)
.|..+-..+.+.|++++|+..|+.+.+. .|+ +..+|..+...|.+.|
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~~~------------------------------~~~~~~~la~~~~~~~ 71 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEE---NKE------------------------------DAIPYINFANLLSSVN 71 (243)
T ss_dssp -----------------CCTTHHHHHTT---CTT------------------------------CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHh---Ccc------------------------------cHHHHHHHHHHHHHcC
Confidence 5555556666677777777777766542 121 2345556677777888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011102 278 NLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESL 357 (493)
Q Consensus 278 ~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 357 (493)
++++|.+.|++..+.. ..+..++..+...+... |++++|.+.++++.+. ...+...+..+...|.+.|++++|.+.
T Consensus 72 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~ 147 (243)
T 2q7f_A 72 ELERALAFYDKALELD-SSAATAYYGAGNVYVVK-EMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPY 147 (243)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHh-ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 8899999998887753 23567788888888888 9999999999988765 234677888888899999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 011102 358 FHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435 (493)
Q Consensus 358 ~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g 435 (493)
|++..+.. +.+...|..+...|.+.|++++|.+.|+++.+.. ..+..++..+...|.+.|++++|.+.|++..+..
T Consensus 148 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 148 LQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99887653 3467788889999999999999999999877653 2356788888999999999999999999887643
No 49
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.07 E-value=7.7e-09 Score=99.33 Aligned_cols=263 Identities=11% Similarity=-0.023 Sum_probs=180.0
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHcCCCchhhhHHH-----hhccC----cHHHHHHHH
Q 011102 204 RELGHMNLPERALQTFCWAQKQPHLFPD----DRLLASTVEVLARHHELKVPFKLEN-----FVSLA----SKGVLEATA 270 (493)
Q Consensus 204 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd----~~t~~~li~~~~~~g~~~~~~~l~~-----~~~~~----~~~~~~~li 270 (493)
..+.+.|++++|+..|+.+.+. .- .+ ...+..+...+...|+++.+..... ..... ...++..+.
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~-~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQV-GT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhh-Cc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 3556677777777777776653 11 12 2455666666666676433322211 11111 234678888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhcCCCC--------------------HHHHHHHHHHH
Q 011102 271 KGFVKGGNLKLAWKLLMVAKDGGR-MLD----PSIYAKLILELGKNPDK--------------------YMLVMTLLDEL 325 (493)
Q Consensus 271 ~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~li~~~~~~~~~--------------------~~~a~~l~~~m 325 (493)
..|...|++++|.+.+++..+..- .++ ..++..+-..+... |+ +++|.+.+++.
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK-GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc-CcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 899999999999999988765210 122 33667777778888 88 89998888875
Q ss_pred hhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011102 326 GQR----DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHS----GRDP-TVVMYTTLIHSRLSEKKCREALTVVWNM 396 (493)
Q Consensus 326 ~~~----~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M 396 (493)
... +........+..+...|...|++++|.+.|++..+. +..+ ...+|..+...|...|++++|.+.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 432 011112346778888999999999999999887532 1111 1347888999999999999999999987
Q ss_pred HHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 397 EAS----NCLFD-LPAYRVVIKLFVALNDISRAIRYFSKLKEA----GFC-PTYDIYRDMIRIFMASGRLAKCRDVCKEA 466 (493)
Q Consensus 397 ~~~----gi~pd-~~ty~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~ty~~li~~~~~~g~~~~A~~l~~~m 466 (493)
.+. +-.+. ..++..+-..|...|++++|...+++..+. +-. ....+|..+...|.+.|++++|.+.+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 642 11111 456778888899999999999999987632 111 12457888999999999999999999998
Q ss_pred HHC
Q 011102 467 EMA 469 (493)
Q Consensus 467 ~~~ 469 (493)
.+.
T Consensus 330 ~~~ 332 (338)
T 3ro2_A 330 LEI 332 (338)
T ss_dssp HHC
T ss_pred HHH
Confidence 753
No 50
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.05 E-value=1.6e-08 Score=100.40 Aligned_cols=264 Identities=10% Similarity=-0.072 Sum_probs=176.9
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHHcCCCchhhhHH-----HhhccC----cHHHHHHHHHH
Q 011102 204 RELGHMNLPERALQTFCWAQKQPHLFPD--DRLLASTVEVLARHHELKVPFKLE-----NFVSLA----SKGVLEATAKG 272 (493)
Q Consensus 204 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd--~~t~~~li~~~~~~g~~~~~~~l~-----~~~~~~----~~~~~~~li~~ 272 (493)
..+.+.|++++|+..|+.......-.++ ..+|..+...+...|+++.+.... ...... ...+|..+...
T Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 96 (406)
T 3sf4_A 17 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 96 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3556666777777777666643111111 234555666666666643322211 111111 23467788888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhcCCCC--------------------HHHHHHHHHHHhh
Q 011102 273 FVKGGNLKLAWKLLMVAKDGGR-MLD----PSIYAKLILELGKNPDK--------------------YMLVMTLLDELGQ 327 (493)
Q Consensus 273 ~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~li~~~~~~~~~--------------------~~~a~~l~~~m~~ 327 (493)
|...|++++|...+++..+..- .++ ..++..+-..|... |+ +++|...+++...
T Consensus 97 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 175 (406)
T 3sf4_A 97 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK-GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS 175 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-HHTCC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc-CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999987765210 012 33667777778888 88 8999888887543
Q ss_pred c---CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011102 328 R---DDLNL-SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSG-RDPT----VVMYTTLIHSRLSEKKCREALTVVWNMEA 398 (493)
Q Consensus 328 ~---~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~M~~ 398 (493)
. .+-.+ ...++..+-..|...|++++|.+.|++..+.. -.++ ..+|..+...|...|++++|.+.+++..+
T Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 255 (406)
T 3sf4_A 176 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 255 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2 11111 23467888889999999999999998876321 0122 34788899999999999999999998764
Q ss_pred C----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 399 S----NCLFD-LPAYRVVIKLFVALNDISRAIRYFSKLKEA----GFCP-TYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 399 ~----gi~pd-~~ty~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
. +-.+. ..++..+-..|.+.|++++|...|++..+. +-.+ ...+|..+...|...|++++|.+.+++..+
T Consensus 256 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 256 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 21111 457788888899999999999999987632 1111 156788889999999999999999988754
No 51
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.05 E-value=8.8e-08 Score=106.40 Aligned_cols=256 Identities=11% Similarity=0.056 Sum_probs=186.8
Q ss_pred hhccCCCCHHHHHHHHhhhcccCcHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhH
Q 011102 175 KGLDSHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKL 254 (493)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l 254 (493)
.++...|++.+|++.|.+..+...|.-++..|.+.|++++|++.|....+. . ++....+.++.+|++.++++ ++
T Consensus 1113 KAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~-~--~e~~Idt~LafaYAKl~rle---el 1186 (1630)
T 1xi4_A 1113 KAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-A--RESYVETELIFALAKTNRLA---EL 1186 (1630)
T ss_pred HHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-c--ccccccHHHHHHHHhhcCHH---HH
Confidence 345667888888888887766668888888888888888888888876653 2 33333445888888887643 35
Q ss_pred HHhhccCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC
Q 011102 255 ENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS 334 (493)
Q Consensus 255 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~ 334 (493)
..|...++...|..+-+.|...|++++|..+|... ..|..+...|++. |++++|.+.+.+. -+
T Consensus 1187 e~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkL-ge~q~AIEaarKA-------~n 1249 (1630)
T 1xi4_A 1187 EEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHL-GEYQAAVDGARKA-------NS 1249 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHh-CCHHHHHHHHHHh-------CC
Confidence 55666666666777888888889999998888874 3788888888888 8888888888766 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011102 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414 (493)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~ 414 (493)
..+|.-+-.+|...|++..|......+ ..+...+..++.-|-+.|.+++|+.+++.-.... .-....|+-+-..
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiL 1323 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHH
Confidence 578888888888888888888776543 3456667799999999999999999997654332 2223345444444
Q ss_pred HHH--cCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcCCHHHHHH
Q 011102 415 FVA--LNDISRAIRYFSKLKEAGFCP------TYDIYRDMIRIFMASGRLAKCRD 461 (493)
Q Consensus 415 ~~~--~g~~~~A~~~~~~m~~~g~~p------~~~ty~~li~~~~~~g~~~~A~~ 461 (493)
|++ -+++.++.++|..=. .+.| +...|.-++-.|.+.|+++.|..
T Consensus 1324 yaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1324 YSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 444 456666776665322 2222 56779999999999999999984
No 52
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.04 E-value=3.8e-08 Score=85.85 Aligned_cols=162 Identities=13% Similarity=0.062 Sum_probs=99.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011102 301 YAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSR 380 (493)
Q Consensus 301 ~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~ 380 (493)
|..+...+... |++++|...++++... ...+...+..+...|.+.|++++|.+.|++..+.. +.+...|..+...|
T Consensus 11 ~~~~~~~~~~~-~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 11 YRDKGISHAKA-GRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHH-TCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34444455555 6666666666655443 12345556666666666666666666666655432 23455666666666
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011102 381 LSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460 (493)
Q Consensus 381 ~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 460 (493)
...|++++|.+.++++.+.. ..+...+..+...+.+.|++++|..++++..+.. ..+...|..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 66677777777666665542 2345566666677777777777777777766443 235666777777777777777777
Q ss_pred HHHHHHHH
Q 011102 461 DVCKEAEM 468 (493)
Q Consensus 461 ~l~~~m~~ 468 (493)
+.+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777654
No 53
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.03 E-value=1.5e-07 Score=90.61 Aligned_cols=184 Identities=15% Similarity=0.035 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC-HH-HHHHHHHHHHHcCCHHHHH
Q 011102 279 LKLAWKLLMVAKDGGRML-DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS-QQ-DCTAIMKVGIRLQKFGVVE 355 (493)
Q Consensus 279 ~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~-~~-~~~~li~~~~~~g~~~~A~ 355 (493)
.++|..+|++..+. +.| +...|..+...+.+. |++++|.++|++..+. .|+ .. .|..+...+.+.|++++|.
T Consensus 80 ~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~ 154 (308)
T 2ond_A 80 SDEAANIYERAIST-LLKKNMLLYFAYADYEESR-MKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp HHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred hHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhc---cccCccHHHHHHHHHHHHhcCHHHHH
Confidence 38899999888873 124 455788888888888 8999999999988764 343 33 7888888888999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 356 SLFHWFTHSGRDPTVVMYTTLIHSR-LSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434 (493)
Q Consensus 356 ~l~~~m~~~g~~p~~~ty~~li~~~-~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~ 434 (493)
.+|++..+.. +.+...|....... ...|+.++|.++|++..+.. .-+...|..++..+.+.|+.++|..+|++..+.
T Consensus 155 ~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 155 MIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999887653 23344454333332 23689999999999876642 125677888888888999999999999998876
Q ss_pred C-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 435 G-FCP--TYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 435 g-~~p--~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
. +.| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 454 4678888888888899999999999888763
No 54
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.01 E-value=7.4e-08 Score=87.77 Aligned_cols=179 Identities=13% Similarity=0.043 Sum_probs=149.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011102 295 MLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYT 374 (493)
Q Consensus 295 ~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~ 374 (493)
+++...+..+-..+.+. |++++|...|++..+. -.-+...+..+-..|.+.|++++|...|++..+.. +-+...|.
T Consensus 2 p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~ 77 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYAL-GRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYM 77 (217)
T ss_dssp --CCHHHHHHHHHHHHT-TCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 35667788888888999 9999999999998765 23467788899999999999999999999987653 34678899
Q ss_pred HHHHHHHcC-----------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 011102 375 TLIHSRLSE-----------KKCREALTVVWNMEASNCLF-DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442 (493)
Q Consensus 375 ~li~~~~~~-----------g~~~~A~~l~~~M~~~gi~p-d~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 442 (493)
.+-..|.+. |++++|+..|++..+. .| +...+..+-..|...|++++|...|++..+.. .+...
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~ 153 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEI 153 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHH
Confidence 999999999 9999999999998775 34 46778888889999999999999999999777 68999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCcc-CHHHHHHHHH
Q 011102 443 YRDMIRIFMASGRLAKCRDVCKEAEMAGFKL-DKQTVVELLQ 483 (493)
Q Consensus 443 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~Ll~ 483 (493)
|..+-..|...|++++|...|++..+. .| +...+..+-.
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~ 193 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYAS 193 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 999999999999999999999999874 44 3444444433
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.01 E-value=1.2e-07 Score=88.60 Aligned_cols=236 Identities=9% Similarity=-0.027 Sum_probs=171.9
Q ss_pred hhccCCCCHHHHHHHHhhhcccC-----cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCc
Q 011102 175 KGLDSHKDVAEVLDKCGRFLRKG-----SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELK 249 (493)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~ 249 (493)
..+...|++++|+..+.+..... .|..+...|.+.|++++|++.|+..... +-.|+.
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~----------------- 72 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKA----------------- 72 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTC-----------------
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhH-----------------
Confidence 34567799999999999765543 7888888999999999999999999864 322221
Q ss_pred hhhhHHHhhccCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcC
Q 011102 250 VPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD 329 (493)
Q Consensus 250 ~~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~ 329 (493)
...+|..+...|.+.|++++|.+.|++..+.. +-+..+|..+-..|... |++++|...|++..+.
T Consensus 73 ------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~- 137 (272)
T 3u4t_A 73 ------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNK-GNFPLAIQYMEKQIRP- 137 (272)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHT-TCHHHHHHHHGGGCCS-
T ss_pred ------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc-cCHHHHHHHHHHHhhc-
Confidence 22345567777888888999999998888753 22456788888888888 9999999999888764
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHC-CCCCC-
Q 011102 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK---CREALTVVWNMEAS-NCLFD- 404 (493)
Q Consensus 330 g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~---~~~A~~l~~~M~~~-gi~pd- 404 (493)
..-+...|..+...+...+++++|.+.|++..+.. +.+...|..+...+...|+ .++|...+++..+. .-.|+
T Consensus 138 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 215 (272)
T 3u4t_A 138 -TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215 (272)
T ss_dssp -SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGG
T ss_pred -CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccccc
Confidence 23345566666624445569999999999887652 2346777778888888887 77788888876653 12233
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011102 405 -----LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446 (493)
Q Consensus 405 -----~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~l 446 (493)
..+|..+-..|.+.|++++|.+.|++..+..- -|...+..+
T Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l 261 (272)
T 3u4t_A 216 YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP-TNKKAIDGL 261 (272)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-cHHHHHHHh
Confidence 25677788889999999999999999886441 234444443
No 56
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.00 E-value=2.4e-08 Score=95.15 Aligned_cols=234 Identities=14% Similarity=-0.042 Sum_probs=133.8
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHhCC------CCCCCHHHHHHHHHHHHHcCCCchhhhHH-----Hhhcc------
Q 011102 198 SLSFTVRELGHMNLPERALQTFCWAQKQP------HLFPDDRLLASTVEVLARHHELKVPFKLE-----NFVSL------ 260 (493)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~------g~~pd~~t~~~li~~~~~~g~~~~~~~l~-----~~~~~------ 260 (493)
.|..+...|...|++++|+.+|+.+.+.. .......++..+...+...|+++.+.... .+...
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 45666778888999999999998887520 11123345666777777777754433221 11111
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhc-----
Q 011102 261 ASKGVLEATAKGFVKGGNLKLAWKLLMVAKDG------GRML-DPSIYAKLILELGKNPDKYMLVMTLLDELGQR----- 328 (493)
Q Consensus 261 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~----- 328 (493)
....+|..+...|...|++++|.+.|++..+. +-.| ...++..+-..+... |++++|.+++++....
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ-GKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHh
Confidence 12335777777777788888888877777653 2222 233456666667777 7788888777776542
Q ss_pred -CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCC-------HHHHHHHHHHHHcCCCHHHHHHHH
Q 011102 329 -DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHS-------GRDPT-------VVMYTTLIHSRLSEKKCREALTVV 393 (493)
Q Consensus 329 -~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~-------~~ty~~li~~~~~~g~~~~A~~l~ 393 (493)
........++..+...|.+.|++++|.+.|++..+. ...+. ...+..+...+...+.+.+|...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 111112345667777777778888888777776642 11111 111222223333334444444455
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 394 WNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433 (493)
Q Consensus 394 ~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 433 (493)
...... -..+..++..+...|.+.|++++|.++|++..+
T Consensus 268 ~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 268 KACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444332 122456788899999999999999999998763
No 57
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.00 E-value=6.6e-09 Score=97.40 Aligned_cols=204 Identities=14% Similarity=0.027 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhc------C
Q 011102 263 KGVLEATAKGFVKGGNLKLAWKLLMVAKDG------GRML-DPSIYAKLILELGKNPDKYMLVMTLLDELGQR------D 329 (493)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~------~ 329 (493)
..+|..+...|...|++++|...|++..+. +-.| ...+|..+-..|... |++++|.+.+.+.... .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHcCC
Confidence 346777888888888888888888877653 2222 234566777777777 8888888888876543 0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC---
Q 011102 330 DLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHS------GRDP-TVVMYTTLIHSRLSEKKCREALTVVWNMEAS--- 399 (493)
Q Consensus 330 g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~--- 399 (493)
.-......+..+...|...|++++|.+.|++..+. +-.| ...++..+...|...|++++|.+.+++..+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11223456777777888888888888888877653 1122 3466777788888888888888888876542
Q ss_pred ----CCCCCHH-HHHHHHHHHHHcCCH------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 400 ----NCLFDLP-AYRVVIKLFVALNDI------SRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 400 ----gi~pd~~-ty~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
...+... .|..+-..+...+.. ..+...++.... .......+|..+...|.+.|++++|.+++++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122222 222222222222222 222222211110 1112345788899999999999999999998764
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.00 E-value=1.3e-07 Score=83.10 Aligned_cols=165 Identities=11% Similarity=0.030 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011102 298 PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI 377 (493)
Q Consensus 298 ~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 377 (493)
+..|..+=..|.+. |++++|++.|++..+. -.-+...+..+...|.+.|++++|...+....... .-+...+..+-
T Consensus 5 ~~iy~~lG~~~~~~-g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 5 TTIYMDIGDKKRTK-GDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 33444444444444 4555555555444332 11233444444555555555555555555443321 22334444444
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 011102 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457 (493)
Q Consensus 378 ~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 457 (493)
..+...+++++|.+.+.+..+.. .-+...+..+-..|.+.|++++|.+.|++..+..- -+..+|..+-..|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHH
Confidence 55555555555555555544321 12344455555555666666666666665554321 24555666666666666666
Q ss_pred HHHHHHHHHHH
Q 011102 458 KCRDVCKEAEM 468 (493)
Q Consensus 458 ~A~~l~~~m~~ 468 (493)
+|.+.|++..+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66666666554
No 59
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.99 E-value=5.8e-08 Score=84.61 Aligned_cols=164 Identities=14% Similarity=0.027 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 011102 264 GVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMK 343 (493)
Q Consensus 264 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~ 343 (493)
..|..+...+...|++++|.+.|+++.+.. +.+..++..+...+... |++++|...+++..+. ...+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 84 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKT-GAVDRGTELLERSLAD--APDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 356778888999999999999999887643 23677888888899999 9999999999998775 2346788889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 011102 344 VGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISR 423 (493)
Q Consensus 344 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~ 423 (493)
.|...|++++|.+.|++..+.. +.+...|..+...|...|++++|.+.+++..+.. ..+...+..+...+.+.|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999987653 4577889999999999999999999999987753 3457889999999999999999
Q ss_pred HHHHHHHHHH
Q 011102 424 AIRYFSKLKE 433 (493)
Q Consensus 424 A~~~~~~m~~ 433 (493)
|...++...+
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.95 E-value=2.8e-07 Score=81.02 Aligned_cols=167 Identities=10% Similarity=-0.055 Sum_probs=141.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 011102 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341 (493)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~l 341 (493)
+..+|..+-..|.+.|++++|++.|++..+.. +-+..+|..+-..|.+. |++++|...+...... ..-+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~-~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDI-GLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 45678899999999999999999999988754 23567888888899999 9999999999998775 33456778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011102 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDI 421 (493)
Q Consensus 342 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~ 421 (493)
...+...++++.|.+.+.+..+.. +-+...+..+-..|.+.|++++|++.|++..+.. +-+..+|..+-..|.+.|++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 889999999999999999887543 3467889999999999999999999999987753 23567889999999999999
Q ss_pred HHHHHHHHHHHHC
Q 011102 422 SRAIRYFSKLKEA 434 (493)
Q Consensus 422 ~~A~~~~~~m~~~ 434 (493)
++|.+.|++..+.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998763
No 61
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.95 E-value=2.2e-07 Score=92.48 Aligned_cols=226 Identities=7% Similarity=-0.038 Sum_probs=153.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcCC
Q 011102 199 LSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGN 278 (493)
Q Consensus 199 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g~ 278 (493)
|+.+-..+.+.|++++|++.|+..... .|+. ..+|+.+-..+.+.|+
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l---~P~~------------------------------~~a~~~~g~~l~~~g~ 146 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIEL---NAAN------------------------------YTVWHFRRVLLKSLQK 146 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHH---CTTC------------------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHh---CccC------------------------------HHHHHHHHHHHHHccc
Confidence 444556778889999999999988753 3432 1233344445555665
Q ss_pred -HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011102 279 -LKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESL 357 (493)
Q Consensus 279 -~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 357 (493)
+++|+..|++..+.. .-+...|+.+-..+.+. |++++|+..|+++... -.-+...|..+-.++.+.|++++|+..
T Consensus 147 d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~-g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~ 222 (382)
T 2h6f_A 147 DLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWL-RDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQY 222 (382)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHH
Confidence 788888888777743 12456677777777777 7888888888877664 223567777777888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHc-CCCHHHH-----HHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC--CHHHHHHHH
Q 011102 358 FHWFTHSGRDPTVVMYTTLIHSRLS-EKKCREA-----LTVVWNMEASNCLF-DLPAYRVVIKLFVALN--DISRAIRYF 428 (493)
Q Consensus 358 ~~~m~~~g~~p~~~ty~~li~~~~~-~g~~~~A-----~~l~~~M~~~gi~p-d~~ty~~li~~~~~~g--~~~~A~~~~ 428 (493)
|+++.+.. .-+...|+.+-..|.+ .|..++| ++.|++..+. .| +...|+.+-..+.+.| ++++|.+.+
T Consensus 223 ~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~ 299 (382)
T 2h6f_A 223 VDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQL 299 (382)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHH
Confidence 88877553 2356777877777777 5554666 4667665553 34 3556777777777777 577888877
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHH
Q 011102 429 SKLKEAGFCPTYDIYRDMIRIFMASG---------RLAKCRDVCKEA 466 (493)
Q Consensus 429 ~~m~~~g~~p~~~ty~~li~~~~~~g---------~~~~A~~l~~~m 466 (493)
.++ + .-..+...+..+.+.|.+.| .+++|.++++++
T Consensus 300 ~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 300 LDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHh-c-cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 776 2 22345667777888887764 257888888887
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.93 E-value=4.4e-08 Score=97.14 Aligned_cols=281 Identities=11% Similarity=-0.041 Sum_probs=198.8
Q ss_pred hhccCCCCHHHHHHHHhhhcccC---------cHHHHHHHHHhCCChHHHHHHHHHHHhC---CCCCC-CHHHHHHHHHH
Q 011102 175 KGLDSHKDVAEVLDKCGRFLRKG---------SLSFTVRELGHMNLPERALQTFCWAQKQ---PHLFP-DDRLLASTVEV 241 (493)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~---~g~~p-d~~t~~~li~~ 241 (493)
..+...|+.++|+..|.+..... .|..+-..|...|++++|+..|+..... .+-.| ...++..+...
T Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 96 (406)
T 3sf4_A 17 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 96 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 44566799999999998665432 4667778999999999999999876532 12222 23467778888
Q ss_pred HHHcCCCchhhhH-----HHhhccCc----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHhC
Q 011102 242 LARHHELKVPFKL-----ENFVSLAS----KGVLEATAKGFVKGGN--------------------LKLAWKLLMVAKDG 292 (493)
Q Consensus 242 ~~~~g~~~~~~~l-----~~~~~~~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~~~ 292 (493)
+...|+++.+... .......+ ..++..+...|...|+ +++|.+.+++..+.
T Consensus 97 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 176 (406)
T 3sf4_A 97 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL 176 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 8888985544332 11112222 3378889999999999 99999999876542
Q ss_pred ----CCCCC-HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 293 ----GRMLD-PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS----QQDCTAIMKVGIRLQKFGVVESLFHWFTH 363 (493)
Q Consensus 293 ----g~~pd-~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 363 (493)
+-.|. ..++..+-..+... |++++|...+++......-.++ ..++..+...|...|++++|...|++..+
T Consensus 177 ~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 255 (406)
T 3sf4_A 177 VTALGDRAAQGRAFGNLGNTHYLL-GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 255 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHH-TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 21111 33567777888888 9999999999987543111122 33788888999999999999999998753
Q ss_pred c----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 364 S----GRDPT-VVMYTTLIHSRLSEKKCREALTVVWNMEAS----NCLFD-LPAYRVVIKLFVALNDISRAIRYFSKLKE 433 (493)
Q Consensus 364 ~----g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----gi~pd-~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 433 (493)
. +..+. ..++..+...|...|++++|.+.+++..+. +-.+. ..++..+-..|.+.|++++|...|++..+
T Consensus 256 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 256 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 11111 567889999999999999999999987653 11111 45778888889999999999999998652
Q ss_pred ----CCCC-CCHHHHHHHHHHHHHcCCH
Q 011102 434 ----AGFC-PTYDIYRDMIRIFMASGRL 456 (493)
Q Consensus 434 ----~g~~-p~~~ty~~li~~~~~~g~~ 456 (493)
.+-. ....++..+...+...|+.
T Consensus 336 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 336 ISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 2221 1245677777788777765
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.89 E-value=4.1e-08 Score=97.98 Aligned_cols=256 Identities=10% Similarity=-0.064 Sum_probs=186.4
Q ss_pred hhccCCCCHHHHHHHHhhhcccC---------cHHHHHHHHHhCCChHHHHHHHHHHHhCC---CCCC-CHHHHHHHHHH
Q 011102 175 KGLDSHKDVAEVLDKCGRFLRKG---------SLSFTVRELGHMNLPERALQTFCWAQKQP---HLFP-DDRLLASTVEV 241 (493)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~~---g~~p-d~~t~~~li~~ 241 (493)
..+...|++++|+..|.+..... .|..+-..|...|++++|++.|+...... +-.| ...++..+-..
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 45567799999999998765532 46677788999999999999998876421 1112 33467778888
Q ss_pred HHHcCCCchhhhHHHhhc-------cC----cHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHhC-
Q 011102 242 LARHHELKVPFKLENFVS-------LA----SKGVLEATAKGFVKGGN-----------------LKLAWKLLMVAKDG- 292 (493)
Q Consensus 242 ~~~~g~~~~~~~l~~~~~-------~~----~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~~~- 292 (493)
+...|+++.+.. .+.. .. ...+|..+...|...|+ +++|.+.+++..+.
T Consensus 136 ~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 136 LKVMGRFDEAAI--CCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHTTCHHHHHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHH--HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 888898554433 2322 11 23378889999999999 99999999876542
Q ss_pred ---CCCC-CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011102 293 ---GRML-DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS----QQDCTAIMKVGIRLQKFGVVESLFHWFTHS 364 (493)
Q Consensus 293 ---g~~p-d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 364 (493)
+-.+ ...++..+-..|... |++++|...+++..+...-..+ ...+..+...|...|++++|.+.|++..+.
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLL-GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1111 224677777888899 9999999999987553100112 237788889999999999999999887642
Q ss_pred CC-CC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 365 GR-DP----TVVMYTTLIHSRLSEKKCREALTVVWNMEAS----NCLF-DLPAYRVVIKLFVALNDISRAIRYFSKLKE 433 (493)
Q Consensus 365 g~-~p----~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----gi~p-d~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 433 (493)
.. .. ...+|..+...|...|++++|.+.+++..+. +-.+ ...+|..+-..|.+.|+.++|..+|++..+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 11 2567889999999999999999999987653 1111 134778888999999999999999998764
No 64
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.88 E-value=1.3e-06 Score=85.97 Aligned_cols=262 Identities=11% Similarity=-0.063 Sum_probs=171.2
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCCHH----HHHHHHHHHHHcCCCchhhhHH-----HhhccCc----HHHHHHHHH
Q 011102 205 ELGHMNLPERALQTFCWAQKQPHLFPDDR----LLASTVEVLARHHELKVPFKLE-----NFVSLAS----KGVLEATAK 271 (493)
Q Consensus 205 ~~~~~g~~~~A~~l~~~m~~~~g~~pd~~----t~~~li~~~~~~g~~~~~~~l~-----~~~~~~~----~~~~~~li~ 271 (493)
.+...|++++|...++....... ..+.. +++.+-..+...|+++.+.... ......+ ..+++.+-.
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 44567777778777777665421 11222 3444455566667644333221 1111112 124567778
Q ss_pred HHHhcCCHHHHHHHHHHHHhC----CCC--CC-HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcC-CCCC--CHHHHHHH
Q 011102 272 GFVKGGNLKLAWKLLMVAKDG----GRM--LD-PSIYAKLILELGKNPDKYMLVMTLLDELGQRD-DLNL--SQQDCTAI 341 (493)
Q Consensus 272 ~~~~~g~~~~A~~l~~~m~~~----g~~--pd-~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~-g~~p--~~~~~~~l 341 (493)
.+...|++++|.+.+++..+. +-. |. ..++..+-..+... |++++|...+++..... ...+ ....|..+
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW-ARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 888999999999999887652 222 22 33555666778888 99999999999875431 1111 24567788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHH-----HHHHHHHcCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHH
Q 011102 342 MKVGIRLQKFGVVESLFHWFTHSGRDPT-VVMYT-----TLIHSRLSEKKCREALTVVWNMEASNCLF---DLPAYRVVI 412 (493)
Q Consensus 342 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~-----~li~~~~~~g~~~~A~~l~~~M~~~gi~p---d~~ty~~li 412 (493)
-..+...|++++|...+++.....-.++ ...+. ..+..+...|+.++|...+++.......+ ....+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 8889999999999999998764321211 11222 23344779999999999999876543211 133567778
Q ss_pred HHHHHcCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 413 KLFVALNDISRAIRYFSKLKE----AGFCPTY-DIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 413 ~~~~~~g~~~~A~~~~~~m~~----~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
..+...|+.++|...++.... .|..++. ..+..+-.++...|+.++|...+++...
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 889999999999999988752 3322233 2666777888999999999999888754
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.87 E-value=6.4e-08 Score=92.79 Aligned_cols=258 Identities=11% Similarity=-0.036 Sum_probs=184.8
Q ss_pred hhccCCCCHHHHHHHHhhhcccC---------cHHHHHHHHHhCCChHHHHHHHHHHHhCC---CCCC-CHHHHHHHHHH
Q 011102 175 KGLDSHKDVAEVLDKCGRFLRKG---------SLSFTVRELGHMNLPERALQTFCWAQKQP---HLFP-DDRLLASTVEV 241 (493)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~~---g~~p-d~~t~~~li~~ 241 (493)
..+...|++++|+..+++..... .|..+-..|...|++++|++.|+...... +-.| ...++..+...
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 34556799999999998765432 56677788999999999999998865321 1111 24467778888
Q ss_pred HHHcCCCchhhhH-----HHhhccCc----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHhC
Q 011102 242 LARHHELKVPFKL-----ENFVSLAS----KGVLEATAKGFVKGGN--------------------LKLAWKLLMVAKDG 292 (493)
Q Consensus 242 ~~~~g~~~~~~~l-----~~~~~~~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~~~ 292 (493)
+...|+++.+... .......+ ..++..+...|...|+ +++|.+.+++..+.
T Consensus 93 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 93 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 8888986544332 11222222 2378889999999999 99999999876542
Q ss_pred ----CCCC-CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 293 ----GRML-DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS----QQDCTAIMKVGIRLQKFGVVESLFHWFTH 363 (493)
Q Consensus 293 ----g~~p-d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 363 (493)
+-.+ ...++..+-..+... |++++|.+.+++......-..+ ...+..+...|.+.|++++|.+.|++..+
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 173 VTALGDRAAQGRAFGNLGNTHYLL-GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 133567777788888 9999999999987543101112 33788888999999999999999998753
Q ss_pred cCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 364 SGR-DPT----VVMYTTLIHSRLSEKKCREALTVVWNMEAS----NCLF-DLPAYRVVIKLFVALNDISRAIRYFSKLKE 433 (493)
Q Consensus 364 ~g~-~p~----~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----gi~p-d~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 433 (493)
... ..+ ..++..+...|...|++++|.+.+++..+. +-.+ ...++..+-..|.+.|++++|...|++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 210 112 567888999999999999999999987643 1111 134677888999999999999999998874
No 66
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.85 E-value=2.2e-07 Score=76.08 Aligned_cols=129 Identities=9% Similarity=0.068 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~ 416 (493)
.|..+...|.+.|++++|..+|+++.+.. +.+...|..+...+...|++++|.++++++.+.+ ..+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45666777777888888888888776543 3356777777778888888888888888776643 234567777777888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 417 ALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 417 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
..|++++|.++++++.+... .+...|..+...+.+.|++++|.+.++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 88888888888888775432 3567777788888888888888888888765
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.85 E-value=2.9e-06 Score=81.44 Aligned_cols=214 Identities=7% Similarity=-0.061 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-------HcCCCc-----hhhhHHHhhc-----cC-cHHHHHHHHHHHH
Q 011102 213 ERALQTFCWAQKQPHLFPDDRLLASTVEVLA-------RHHELK-----VPFKLENFVS-----LA-SKGVLEATAKGFV 274 (493)
Q Consensus 213 ~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~-------~~g~~~-----~~~~l~~~~~-----~~-~~~~~~~li~~~~ 274 (493)
++|+.+|+..... ..-+...|..+...+. +.|+++ ..++...|.. .+ +...|..+...+.
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 5667777776643 1224455666555554 235541 1223222221 12 4457888888999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH-HcCCH
Q 011102 275 KGGNLKLAWKLLMVAKDGGRMLD-PS-IYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGI-RLQKF 351 (493)
Q Consensus 275 ~~g~~~~A~~l~~~m~~~g~~pd-~~-t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~-~~g~~ 351 (493)
+.|++++|.++|++..+. .|+ .. .|..+...+.+. |++++|..+|++..+.. ..+...|........ ..|++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRA-EGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHH-HCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCH
Confidence 999999999999999984 454 33 788888888888 99999999999988752 233444543333322 26999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 011102 352 GVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN-CLF--DLPAYRVVIKLFVALNDISRAIRYF 428 (493)
Q Consensus 352 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g-i~p--d~~ty~~li~~~~~~g~~~~A~~~~ 428 (493)
++|.++|+...+.. +-+...|..++..+.+.|+.++|..+|++..+.. +.| ....|..++..+.+.|+.++|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999886542 3367889999999999999999999999998863 455 4678899999999999999999999
Q ss_pred HHHHHC
Q 011102 429 SKLKEA 434 (493)
Q Consensus 429 ~~m~~~ 434 (493)
+++.+.
T Consensus 265 ~~a~~~ 270 (308)
T 2ond_A 265 KRRFTA 270 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998753
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.85 E-value=6.3e-08 Score=99.41 Aligned_cols=198 Identities=12% Similarity=-0.085 Sum_probs=157.5
Q ss_pred cHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 011102 262 SKGVLEATAKGFVKGGNL-KLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTA 340 (493)
Q Consensus 262 ~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~ 340 (493)
+...|..+-..|...|++ ++|++.|++..+.. +-+...|..+-..|.+. |++++|.+.|++..+. .|+...+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~---~p~~~~~~~ 175 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKK-GDVTSAHTCFSGALTH---CKNKVSLQN 175 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTT---CCCHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh---CCCHHHHHH
Confidence 345566677778888888 89999998887753 12467888888888888 8999999999988764 477788888
Q ss_pred HHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHHCCCC-
Q 011102 341 IMKVGIRL---------QKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE--------KKCREALTVVWNMEASNCL- 402 (493)
Q Consensus 341 li~~~~~~---------g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~--------g~~~~A~~l~~~M~~~gi~- 402 (493)
+-..|... |++++|.+.|++..+.. +-+...|..+-..|... |++++|++.|++..+..-.
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 88888888 99999999999887653 34578888999999888 8999999999998774210
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 403 -FDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466 (493)
Q Consensus 403 -pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 466 (493)
-+...|..+-..|.+.|++++|.+.|++..+..- -+...+..+...+...|++++|.+.+.++
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2778899999999999999999999999876542 25667888888899999999988765443
No 69
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.83 E-value=5.2e-07 Score=89.69 Aligned_cols=210 Identities=9% Similarity=-0.032 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhhcCCCCCCHHHHHH
Q 011102 263 KGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRML-DPSIYAKLILELGKNPDK-YMLVMTLLDELGQRDDLNLSQQDCTA 340 (493)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~~~~-~~~a~~l~~~m~~~~g~~p~~~~~~~ 340 (493)
..+|+.+-..+.+.|++++|++.|++..+.. | +...|+.+-..+... |+ +++|+..|++.... -.-+...|+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~-g~d~~eAl~~~~~al~l--~P~~~~a~~~ 171 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSL-QKDLHEEMNYITAIIEE--QPKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHH--CCCCHHHHHH
Confidence 3467778888899999999999999998854 5 467788888889999 86 99999999999875 2346788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cC
Q 011102 341 IMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA-LN 419 (493)
Q Consensus 341 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~-~g 419 (493)
+-..|.+.|++++|+..|++..+.. .-+...|..+-.++.+.|++++|++.|+++.+... -+...|+.+-..+.+ .|
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999988653 34788999999999999999999999999987643 367889999889998 67
Q ss_pred CHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCcc-CHHHHHHHHH
Q 011102 420 DISRA-----IRYFSKLKEAGFCPTYDIYRDMIRIFMASG--RLAKCRDVCKEAEMAGFKL-DKQTVVELLQ 483 (493)
Q Consensus 420 ~~~~A-----~~~~~~m~~~g~~p~~~ty~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p-d~~t~~~Ll~ 483 (493)
..++| ...|++..+..- -+...|+.+-..|.+.| ++++|.+.+.++ + ..| +...+..|..
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~ 317 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVD 317 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHH
Confidence 65777 478888775432 25778888888899888 689999999888 2 344 4455555544
No 70
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.81 E-value=7.4e-08 Score=90.15 Aligned_cols=224 Identities=13% Similarity=-0.051 Sum_probs=142.3
Q ss_pred hCCChHHHHHHHHHHHhCC------CCCCCHHHHHHHHHHHHHcCCCchhhhHH-----Hhhc------cCcHHHHHHHH
Q 011102 208 HMNLPERALQTFCWAQKQP------HLFPDDRLLASTVEVLARHHELKVPFKLE-----NFVS------LASKGVLEATA 270 (493)
Q Consensus 208 ~~g~~~~A~~l~~~m~~~~------g~~pd~~t~~~li~~~~~~g~~~~~~~l~-----~~~~------~~~~~~~~~li 270 (493)
..|++++|+++|++..+.. .......++..+...+...|+++.+.... .... .....+|..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 3455555555555444310 11224557888888999999865544331 1111 11334789999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhc------CCCCCCHHH
Q 011102 271 KGFVKGGNLKLAWKLLMVAKDG------GRML-DPSIYAKLILELGKNPDKYMLVMTLLDELGQR------DDLNLSQQD 337 (493)
Q Consensus 271 ~~~~~~g~~~~A~~l~~~m~~~------g~~p-d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~------~g~~p~~~~ 337 (493)
..|...|++++|.+.|++..+. .-.| ...+|..+-..|... |++++|...+++.... +.......+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQ-GKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999999998764 1112 345677888889999 9999999999998653 111223567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHcCCCH------HHHHHHHHHHHHCCCCC
Q 011102 338 CTAIMKVGIRLQKFGVVESLFHWFTHS-------GRDPT-VVMYTTLIHSRLSEKKC------REALTVVWNMEASNCLF 403 (493)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~-~~ty~~li~~~~~~g~~------~~A~~l~~~M~~~gi~p 403 (493)
+..+...|.+.|++++|.+.|++..+. ...+. ...|..+...+...+.. .++...+..... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999988753 11222 22333333333333322 222222222111 1112
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKE 433 (493)
Q Consensus 404 d~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 433 (493)
...++..+-..|.+.|++++|..+|++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345788888999999999999999998764
No 71
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.79 E-value=1.2e-06 Score=88.97 Aligned_cols=293 Identities=10% Similarity=-0.074 Sum_probs=147.4
Q ss_pred hccCCCCHHHHHHHHhhhccc-------------CcHHHHHHHHHh--CCChHHHHHHHHHHHhCCCCCCC-HHHHHHHH
Q 011102 176 GLDSHKDVAEVLDKCGRFLRK-------------GSLSFTVRELGH--MNLPERALQTFCWAQKQPHLFPD-DRLLASTV 239 (493)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~-------------~~~~~li~~~~~--~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~li 239 (493)
.+...|+.++|...+++...- .+|+..-.++.+ .+++++|++.|+...+. .|+ ...+..+.
T Consensus 103 ~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~---~p~~~~~~~~~~ 179 (472)
T 4g1t_A 103 VYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK---KPKNPEFTSGLA 179 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---STTCHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 344556777776666543211 023322223333 34567777777776643 233 23333333
Q ss_pred HHH---HHcCCCchhhhHHHhhc-----cCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011102 240 EVL---ARHHELKVPFKLENFVS-----LASKGVLEATAKGFVK----GGNLKLAWKLLMVAKDGGRMLDPSIYAKLILE 307 (493)
Q Consensus 240 ~~~---~~~g~~~~~~~l~~~~~-----~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~ 307 (493)
.++ ...++.+ +++..+.. ..+..++..+...+.. .|+.++|.+++++..... +.+..++..+-..
T Consensus 180 ~~~~~l~~~~~~~--~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~ 256 (472)
T 4g1t_A 180 IASYRLDNWPPSQ--NAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKF 256 (472)
T ss_dssp HHHHHHHHSCCCC--CTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHhcCchHHH--HHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHH
Confidence 332 2333322 22222221 1234445444444433 356677777777766643 2345566777777
Q ss_pred HhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH-------------------cCCHHHHHHHHHHHHHcCCCC
Q 011102 308 LGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR-------------------LQKFGVVESLFHWFTHSGRDP 368 (493)
Q Consensus 308 ~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p 368 (493)
|... |++++|...+++..+. ..-+..++..+-..|.. .+..++|...|++..+.. +.
T Consensus 257 ~~~~-~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~ 332 (472)
T 4g1t_A 257 YRRK-DEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DN 332 (472)
T ss_dssp HHHT-TCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TT
T ss_pred HHHc-CchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cc
Confidence 7777 8888888888877654 12234445444444322 123456666666655432 23
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHHCC----------
Q 011102 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP--AYRVVIK-LFVALNDISRAIRYFSKLKEAG---------- 435 (493)
Q Consensus 369 ~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~--ty~~li~-~~~~~g~~~~A~~~~~~m~~~g---------- 435 (493)
+..+|..+-..|...|++++|.+.|++..+....+... .+..+-. .+...|+.++|...|++..+..
T Consensus 333 ~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~ 412 (472)
T 4g1t_A 333 LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK 412 (472)
T ss_dssp TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 34557777888888888888888888877654333221 1222211 2346788888888877655321
Q ss_pred -------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CccCHHHH
Q 011102 436 -------------FCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAG-FKLDKQTV 478 (493)
Q Consensus 436 -------------~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~ 478 (493)
-+.+..+|..|-..|...|++++|.+.|++..+.| ..|+..+|
T Consensus 413 ~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 413 DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 12245677888888888888888888888887654 34554443
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.77 E-value=6.5e-07 Score=91.81 Aligned_cols=184 Identities=7% Similarity=-0.012 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCH-HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011102 279 LKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKY-MLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESL 357 (493)
Q Consensus 279 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~-~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 357 (493)
++++++.+++..... ..+...|..+-..+... |++ ++|.+.|++..+. -.-+...|..+-..|.+.|++++|.+.
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~-g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVT-PDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSS-SSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhc-cccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 677777887766543 24677888888888998 999 9999999998775 223578999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcC---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CC
Q 011102 358 FHWFTHSGRDPTVVMYTTLIHSRLSE---------KKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL--------ND 420 (493)
Q Consensus 358 ~~~m~~~g~~p~~~ty~~li~~~~~~---------g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~--------g~ 420 (493)
|++..+. .|+...|..+-..|... |++++|.+.|++..+..- -+...|..+-.+|... |+
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccch
Confidence 9998866 57789999999999999 999999999999877532 3577888898999988 99
Q ss_pred HHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 421 ISRAIRYFSKLKEAGFC--PTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 421 ~~~A~~~~~~m~~~g~~--p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
+++|...|++..+..-. -+...|..+-..|...|++++|.+.|++..+.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999865310 37889999999999999999999999998764
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.77 E-value=9.2e-07 Score=87.63 Aligned_cols=234 Identities=9% Similarity=-0.030 Sum_probs=159.8
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcCCHHHHH
Q 011102 204 RELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAW 283 (493)
Q Consensus 204 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 283 (493)
..+...|++++|++.|+.......-.+|... ...+|..+-..|...|++++|.
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------------------~a~~~~~lg~~~~~~~~~~~A~ 163 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIE---------------------------KAEFFFKMSESYYYMKQTYFSM 163 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH---------------------------HHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHH---------------------------HHHHHHHHHHHHHHcCCHHHHH
Confidence 4567889999999999998754111222110 1234556666777778888888
Q ss_pred HHHHHHHhCCC-CC-----CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHHcCCHHH
Q 011102 284 KLLMVAKDGGR-ML-----DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS----QQDCTAIMKVGIRLQKFGV 353 (493)
Q Consensus 284 ~l~~~m~~~g~-~p-----d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~ 353 (493)
..+++..+.-- .+ ...+++.+-..|... |++++|...|++......-..+ ..++..+-..|...|++++
T Consensus 164 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 164 DYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDL-KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp HHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 87777654210 01 134566677778888 8999999888876542100112 2367788888999999999
Q ss_pred HHHHHHHHHHc----CC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCC---H
Q 011102 354 VESLFHWFTHS----GR-DPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS----NCLFDLPAYRVVIKLFVALND---I 421 (493)
Q Consensus 354 A~~l~~~m~~~----g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----gi~pd~~ty~~li~~~~~~g~---~ 421 (493)
|.+.|++..+. +. .....++..+-..|.+.|++++|.+.+++..+. +-......+..+-..|...|+ +
T Consensus 243 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 322 (383)
T 3ulq_A 243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322 (383)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999887651 33 334677888999999999999999999886543 111122335666677788888 7
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 422 SRAIRYFSKLKEAGFCPT-YDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 422 ~~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
++|..++++. +..|+ ...+..+-..|...|++++|.+.+++..+
T Consensus 323 ~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 323 QGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777665 33333 34677788899999999999999988764
No 74
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.74 E-value=6.1e-07 Score=73.30 Aligned_cols=96 Identities=9% Similarity=0.051 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011102 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414 (493)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~ 414 (493)
...+..+...+...|++++|..+|+++.+.+ +.+...|..+...+...|++++|.+.++++.+.. ..+...+..+...
T Consensus 35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 112 (136)
T 2fo7_A 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNA 112 (136)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3344444444444444444444444443322 2233444445555555555555555555544332 1233444455555
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 011102 415 FVALNDISRAIRYFSKLK 432 (493)
Q Consensus 415 ~~~~g~~~~A~~~~~~m~ 432 (493)
+.+.|++++|...|+++.
T Consensus 113 ~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 113 YYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHTTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHH
Confidence 555555555555555544
No 75
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.70 E-value=2.9e-06 Score=88.04 Aligned_cols=200 Identities=15% Similarity=0.051 Sum_probs=157.4
Q ss_pred cHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 011102 262 SKGVLEATAKGFVK-------GGNLK-------LAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQ 327 (493)
Q Consensus 262 ~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~ 327 (493)
+...|..+...+.+ .|+++ +|.++|++..+.-.+-+...|..+...+.+. |++++|..+|+...+
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~-g~~~~A~~~~~~al~ 349 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR-MKYEKVHSIYNRLLA 349 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc-CCHHHHHHHHHHHhC
Confidence 56678878777775 79987 8999999988632333578889999999999 999999999999987
Q ss_pred cCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHCCCCC-
Q 011102 328 RDDLNLS--QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIH-SRLSEKKCREALTVVWNMEASNCLF- 403 (493)
Q Consensus 328 ~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~-~~~~~g~~~~A~~l~~~M~~~gi~p- 403 (493)
. .|+ ...|...+..+.+.|++++|.++|++..+..- .+...|..... -+...|+.++|..+|++..+. .|
T Consensus 350 ~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~ 423 (530)
T 2ooe_A 350 I---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGD 423 (530)
T ss_dssp S---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTT
T ss_pred c---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCC
Confidence 5 343 35899999999999999999999999876421 12222222221 233689999999999987764 24
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 404 DLPAYRVVIKLFVALNDISRAIRYFSKLKEAG-FCP--TYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 404 d~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
+...|..++..+.+.|+.++|..+|++....+ ..| ....|...+......|+.+.+.++++++.+
T Consensus 424 ~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 424 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57889999999999999999999999998763 233 256898889988999999999999998875
No 76
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.68 E-value=9.5e-06 Score=77.31 Aligned_cols=178 Identities=10% Similarity=0.008 Sum_probs=99.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011102 282 AWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDL-NLSQQDCTAIMKVGIRLQKFGVVESLFHW 360 (493)
Q Consensus 282 A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 360 (493)
|+..|++..+.+ .++..++..+-..+... |++++|++++.+.... +- .-+...+..++..|.+.|+.+.|.+.+++
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~-g~~eeAL~~l~~~i~~-~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAIL-GDLDKSLETCVEGIDN-DEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTS-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHhcc-CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 556666655544 34455544555566666 7777777777665433 21 12445566666777777777777777777
Q ss_pred HHHcCCCC-----CHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 361 FTHSGRDP-----TVVMYTTLIHSRLS----EKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431 (493)
Q Consensus 361 m~~~g~~p-----~~~ty~~li~~~~~----~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m 431 (493)
|.+. .| +-.+..-|..++.. .++..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7543 44 23444444444222 23677777777776543 244333344445667777777777777655
Q ss_pred HHC-----CC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 432 KEA-----GF----CPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 432 ~~~-----g~----~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
.+. +. .-|..+.-.+|......|+ +|.++++++.+
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 421 10 2244555344444444555 66677777665
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.68 E-value=1.3e-06 Score=93.96 Aligned_cols=159 Identities=9% Similarity=-0.047 Sum_probs=69.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011102 301 YAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSR 380 (493)
Q Consensus 301 ~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~ 380 (493)
|+.+=..|.+. |++++|++.|++..+. -.-+...|+.+-.+|.+.|++++|++.|++..+.. +-+...|+.+-..|
T Consensus 12 l~nLG~~~~~~-G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 12 LNNLANIKREQ-GNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33343444444 4444444444443332 01123344444444444444444444444443321 11234444444444
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 011102 381 LSEKKCREALTVVWNMEASNCLF-DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKC 459 (493)
Q Consensus 381 ~~~g~~~~A~~l~~~M~~~gi~p-d~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 459 (493)
.+.|++++|++.|++..+. .| +...|+.+-..|.+.|++++|.+.|++..+..- -+...|..+...|...|++++|
T Consensus 88 ~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHHH
Confidence 4445555555444444332 12 233444444555555555555555554443221 1334445555555555555555
Q ss_pred HHHHHHH
Q 011102 460 RDVCKEA 466 (493)
Q Consensus 460 ~~l~~~m 466 (493)
.+.+++.
T Consensus 165 ~~~~~ka 171 (723)
T 4gyw_A 165 DERMKKL 171 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444444
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.67 E-value=2.9e-06 Score=83.97 Aligned_cols=233 Identities=11% Similarity=0.004 Sum_probs=159.6
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcCCHHHHHH
Q 011102 205 ELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWK 284 (493)
Q Consensus 205 ~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 284 (493)
.+...|++++|+..|+.......-.+|.. ....+|..+-..|...|+++.|..
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------~~a~~~~~lg~~y~~~~~~~~A~~ 162 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDI---------------------------EKAEFHFKVAEAYYHMKQTHVSMY 162 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHH---------------------------HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChH---------------------------HHHHHHHHHHHHHHHcCCcHHHHH
Confidence 45678999999999998875411112211 012345667777788888888888
Q ss_pred HHHHHHhC----CC-CC-CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcC---CCC-CCHHHHHHHHHHHHHcCCHHHH
Q 011102 285 LLMVAKDG----GR-ML-DPSIYAKLILELGKNPDKYMLVMTLLDELGQRD---DLN-LSQQDCTAIMKVGIRLQKFGVV 354 (493)
Q Consensus 285 l~~~m~~~----g~-~p-d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~---g~~-p~~~~~~~li~~~~~~g~~~~A 354 (493)
.+++..+. +- .+ ...+++.+-..|... |++++|.+.|++..... +-. ....+++.+-..|...|++++|
T Consensus 163 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A 241 (378)
T 3q15_A 163 HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF-KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMA 241 (378)
T ss_dssp HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 88776542 11 11 134566777778888 89999998888765420 111 1234677788889999999999
Q ss_pred HHHHHHHHH----cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCC---HHH
Q 011102 355 ESLFHWFTH----SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN----CLFDLPAYRVVIKLFVALND---ISR 423 (493)
Q Consensus 355 ~~l~~~m~~----~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g----i~pd~~ty~~li~~~~~~g~---~~~ 423 (493)
.+.|++..+ .+.+....++..+-..|.+.|+.++|.+.+++..+.. -......+..+-..|...|+ +++
T Consensus 242 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~ 321 (378)
T 3q15_A 242 VEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHD 321 (378)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 999988765 1223336788889999999999999999999876531 22223455566666777788 777
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 424 AIRYFSKLKEAGFCPT-YDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 424 A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
|..++++. +..|+ ...+..+-..|...|++++|.+.|++..+
T Consensus 322 al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 322 LLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777662 22232 34566788889999999999999988753
No 79
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.66 E-value=1.2e-05 Score=81.59 Aligned_cols=292 Identities=10% Similarity=-0.095 Sum_probs=180.5
Q ss_pred cCCCCHHHHHHHHhhhcc-----------cC---cHHHHHHHHHhCCChHHHHHHHHHHHhC----CC-CCC-CHHHHHH
Q 011102 178 DSHKDVAEVLDKCGRFLR-----------KG---SLSFTVRELGHMNLPERALQTFCWAQKQ----PH-LFP-DDRLLAS 237 (493)
Q Consensus 178 ~~~~~~~~a~~~~~~m~~-----------~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~----~g-~~p-d~~t~~~ 237 (493)
...|+.++|++.|.+..+ .. +|+.+-..|...|++++|...|+..... .+ ..+ ...++..
T Consensus 62 ~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~ 141 (472)
T 4g1t_A 62 HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHH
Confidence 446888888888874322 11 5677777888889999998888887642 01 112 2345555
Q ss_pred HHHHHHHcCCCchhhhHHHhhcc----C-cHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 011102 238 TVEVLARHHELKVPFKLENFVSL----A-SKGVLEATAKG---FVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELG 309 (493)
Q Consensus 238 li~~~~~~g~~~~~~~l~~~~~~----~-~~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 309 (493)
.-.++.+.|.-+..+++..|... | +...+..+... +...++.++|++.|++..+.. +.+..++..+-..+.
T Consensus 142 ~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~ 220 (472)
T 4g1t_A 142 EGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLH 220 (472)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHH
Confidence 55556665554455565555431 2 33344444333 445677778888888777643 123445554444443
Q ss_pred cC---CCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---
Q 011102 310 KN---PDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE--- 383 (493)
Q Consensus 310 ~~---~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~--- 383 (493)
.. .+++++|.+++++.... -..+...+..+-..|.+.|++++|.+.|++..+.. +-+..+|..+-..|...
T Consensus 221 ~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~ 297 (472)
T 4g1t_A 221 KMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQ 297 (472)
T ss_dssp HCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHH
Confidence 32 25677888888887664 23456778888888889999999999988876542 23456677666666432
Q ss_pred ----------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHH
Q 011102 384 ----------------KKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYD--IYRD 445 (493)
Q Consensus 384 ----------------g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--ty~~ 445 (493)
+..++|...+++..+... .+..++..+-..|.+.|++++|...|++..+....+... .+..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~ 376 (472)
T 4g1t_A 298 VMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLR 376 (472)
T ss_dssp HHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 224566667766554321 233457777888899999999999999888655433221 1222
Q ss_pred HHH-HHHHcCCHHHHHHHHHHHHHCCCccCHH
Q 011102 446 MIR-IFMASGRLAKCRDVCKEAEMAGFKLDKQ 476 (493)
Q Consensus 446 li~-~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 476 (493)
+.. .+...|+.++|.+.|++..+ +.|+..
T Consensus 377 ~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~ 406 (472)
T 4g1t_A 377 YGNFQLYQMKCEDKAIHHFIEGVK--INQKSR 406 (472)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHH--SCCCCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh--cCcccH
Confidence 222 23467889999999988876 455544
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.63 E-value=6.1e-06 Score=75.07 Aligned_cols=205 Identities=9% Similarity=-0.057 Sum_probs=149.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 011102 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341 (493)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~l 341 (493)
+...|...-..+.+.|++++|.+.|++..+..-.++...+..+-..+... |++++|...|++..+. -.-+...|..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNI-KKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh-hcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 44677778888999999999999999998876446777777788888888 9999999999998764 22356678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHH
Q 011102 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTV-------VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD---LPAYRVV 411 (493)
Q Consensus 342 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd---~~ty~~l 411 (493)
-..|.+.|++++|.+.|++..+.. +.+. ..|..+-..+...|++++|.+.|++..+. .|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 899999999999999999887642 2233 45778888888999999999999988764 565 3456666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 011102 412 IKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELL 482 (493)
Q Consensus 412 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll 482 (493)
-..|...| ..+++++...+- .+...|..... ...+.+++|...+++..+. .|+......++
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l 220 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLAS-SNKEKYASEKA--KADAAFKKAVDYLGEAVTL--SPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 66665443 444555554432 24555554443 3456789999999998874 56554444443
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.62 E-value=2.1e-06 Score=92.28 Aligned_cols=162 Identities=12% Similarity=-0.036 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 011102 263 KGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLD-PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341 (493)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~l 341 (493)
..+|+.|-..|.+.|++++|++.|++..+.. |+ ..+|+.+-..|.+. |++++|++.|++..+. -.-+...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~-g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQ-GKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 4578889999999999999999999998853 54 67888898999999 9999999999998764 12347789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q 011102 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF-DLPAYRVVIKLFVALND 420 (493)
Q Consensus 342 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~p-d~~ty~~li~~~~~~g~ 420 (493)
-.+|.+.|++++|++.|++..+.. +-+...|+.+-..|.+.|++++|++.|++..+. .| +...|..+...|...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhccc
Confidence 999999999999999999987642 336789999999999999999999999998764 35 46789999999999999
Q ss_pred HHHHHHHHHHHH
Q 011102 421 ISRAIRYFSKLK 432 (493)
Q Consensus 421 ~~~A~~~~~~m~ 432 (493)
+++|.+.+++..
T Consensus 161 ~~~A~~~~~kal 172 (723)
T 4gyw_A 161 WTDYDERMKKLV 172 (723)
T ss_dssp CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888765
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.62 E-value=2.4e-06 Score=81.43 Aligned_cols=200 Identities=11% Similarity=-0.010 Sum_probs=143.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC----H
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDG----GRMLD-PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS----Q 335 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~----~ 335 (493)
.|+.....|...|++++|.+.|++..+. |-.++ ..+|+.+-..|.+. |++++|+..+++......-..+ .
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG-GNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3455567788899999999999877653 32222 45788888899999 9999999999876543100011 3
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----
Q 011102 336 QDCTAIMKVGIRL-QKFGVVESLFHWFTHS----GRDPT-VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL---- 405 (493)
Q Consensus 336 ~~~~~li~~~~~~-g~~~~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~---- 405 (493)
.+++.+-..|... |++++|...|++..+. +-... ..+|+.+...|.+.|++++|+..|++..+.......
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5788888999996 9999999999987642 11111 356889999999999999999999998875433222
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 011102 406 --PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTY------DIYRDMIRIFM--ASGRLAKCRDVCKEAE 467 (493)
Q Consensus 406 --~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~ty~~li~~~~--~~g~~~~A~~l~~~m~ 467 (493)
..|..+...+...|++++|...|++..+ +.|+. ..+..++.+|. ..+++++|.+.|+.+.
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 2567777889999999999999998763 22332 23445666664 4567888888887764
No 83
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.61 E-value=3.4e-06 Score=83.48 Aligned_cols=204 Identities=12% Similarity=0.015 Sum_probs=148.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC-----HHHH
Q 011102 269 TAKGFVKGGNLKLAWKLLMVAKDGG-RMLD----PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS-----QQDC 338 (493)
Q Consensus 269 li~~~~~~g~~~~A~~l~~~m~~~g-~~pd----~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~-----~~~~ 338 (493)
.-..+...|++++|.+.|++..+.- -.+| ..+|..+-..|... |++++|...+.+......-.++ ..++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM-KQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 4456778999999999999998741 1133 34677777888888 9999999999986543111122 3477
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CC-CCCHHHH
Q 011102 339 TAIMKVGIRLQKFGVVESLFHWFTHS----GRDP-TVVMYTTLIHSRLSEKKCREALTVVWNMEAS----NC-LFDLPAY 408 (493)
Q Consensus 339 ~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----gi-~pd~~ty 408 (493)
+.+-..|...|++++|.+.|++..+. +-.+ ...+|+.+-..|...|++++|.+.+++..+. +- .-...++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 88889999999999999999887632 1111 1247888999999999999999999987662 33 3345678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCccCHH
Q 011102 409 RVVIKLFVALNDISRAIRYFSKLKEA----GFCPTYDIYRDMIRIFMASGR---LAKCRDVCKEAEMAGFKLDKQ 476 (493)
Q Consensus 409 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~ty~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd~~ 476 (493)
..+-..|.+.|++++|...+++..+. +-......+..+-..|...|+ +++|..++++. +..|+..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~ 339 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLE 339 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHH
Confidence 88899999999999999999987632 222223345677778888898 77777777665 4444443
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.56 E-value=1.3e-05 Score=72.79 Aligned_cols=188 Identities=10% Similarity=-0.054 Sum_probs=135.7
Q ss_pred CHHHHHHHHHHHHHcCCCchhhhHHHhhc----c--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHH
Q 011102 231 DDRLLASTVEVLARHHELKVPFKLENFVS----L--ASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLD-PSIYAK 303 (493)
Q Consensus 231 d~~t~~~li~~~~~~g~~~~~~~l~~~~~----~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ 303 (493)
|...+...-..+.+.|+++. ++..|.. . .+..++..+...|.+.|++++|.+.|++..+.. |+ ...|..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~ 81 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAV--AFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIG 81 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHH--HHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHH
Confidence 56777778888888898544 4433332 2 455666668999999999999999999998854 54 557778
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHH
Q 011102 304 LILELGKNPDKYMLVMTLLDELGQRDDLNLSQ-------QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT---VVMY 373 (493)
Q Consensus 304 li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~ty 373 (493)
+-..+... |++++|...+++..+.. .-+. ..|..+-..+.+.|++++|.+.|++..+. .|+ ...|
T Consensus 82 l~~~~~~~-~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 156 (228)
T 4i17_A 82 KSAAYRDM-KNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDAL 156 (228)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHH
T ss_pred HHHHHHHc-ccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHH
Confidence 88889999 99999999999987751 2234 45777778889999999999999998754 565 4667
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 011102 374 TTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435 (493)
Q Consensus 374 ~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g 435 (493)
..+-..|...| ..+++++...+- .+...|..... ...+.+++|...|++..+..
T Consensus 157 ~~l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 157 YSLGVLFYNNG-----ADVLRKATPLAS-SNKEKYASEKA--KADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence 77777775543 444555554432 33455555443 34566899999999887643
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.53 E-value=1.5e-05 Score=78.29 Aligned_cols=254 Identities=10% Similarity=-0.062 Sum_probs=170.5
Q ss_pred cCCCCHHHHHHHHhhhccc----C------cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHH
Q 011102 178 DSHKDVAEVLDKCGRFLRK----G------SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDD----RLLASTVEVLA 243 (493)
Q Consensus 178 ~~~~~~~~a~~~~~~m~~~----~------~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~----~t~~~li~~~~ 243 (493)
...|++++|...+.+.... + .++.+-..+...|++++|.+.+++......-..+. .++..+-..+.
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3468888888887754322 1 34455567888999999999998876421111222 23556667778
Q ss_pred HcCCCchhhhHH-----Hhhcc-----C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--C--CHHHHHHHHHHH
Q 011102 244 RHHELKVPFKLE-----NFVSL-----A-SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRM--L--DPSIYAKLILEL 308 (493)
Q Consensus 244 ~~g~~~~~~~l~-----~~~~~-----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--d~~t~~~li~~~ 308 (493)
..|+++.+.... ..... + ...++..+-..+...|++++|...+++..+..-. + ...+|..+-..+
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 888865443321 11111 1 2235677888899999999999999988764321 1 235677777788
Q ss_pred hcCCCCHHHHHHHHHHHhhcC-CCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHH
Q 011102 309 GKNPDKYMLVMTLLDELGQRD-DLNLSQQDCT----AIMKVGIRLQKFGVVESLFHWFTHSGRDP---TVVMYTTLIHSR 380 (493)
Q Consensus 309 ~~~~~~~~~a~~l~~~m~~~~-g~~p~~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~ty~~li~~~ 380 (493)
... |++++|...+++..... .......... .....+...|++++|...+++.......+ ....+..+...+
T Consensus 185 ~~~-g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 185 LAR-GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHH-TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHc-CCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 888 99999999999875431 1111112111 23345789999999999998876432211 134577888999
Q ss_pred HcCCCHHHHHHHHHHHHHC----CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 381 LSEKKCREALTVVWNMEAS----NCLFDLP-AYRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 381 ~~~g~~~~A~~l~~~M~~~----gi~pd~~-ty~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
...|+.++|.+.+++.... |..++.. .+..+-.++...|+.++|...+++..
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999987542 3323332 56666778899999999999998876
No 86
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.46 E-value=2.4e-05 Score=79.49 Aligned_cols=338 Identities=9% Similarity=-0.037 Sum_probs=206.1
Q ss_pred ccccchhHHHHHhhhcCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCChhHHH---hhh---hhhhhhhhhccCCchhHH
Q 011102 96 FIWESEELEAISSLFQGR-IPQKPGRLYRERPLPLPLPHRLRPLELPTPKKRV---CLA---SSRASICKQVYKNPSFLI 168 (493)
Q Consensus 96 ~~~~~~~~~~a~~lf~~m-~~g~~p~~~t~~~l~~~~~~~~~~~~~~~~~~~~---~~a---~~~~~~~~~~~~~~~~l~ 168 (493)
..+..|+++.|..+|... ..| +...+..|. ..|...+.. .+| ..++. .. .+....
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg----------~~y~~~g~~~d~~~A~~~~~~A~-~~----~~~A~~ 73 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLA----------DIQVGTRDPAQIKQAEATYRAAA-DT----SPRAQA 73 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------------------CHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHH----------HHHHccCCCCCHHHHHHHHHHHH-hC----CHHHHH
Confidence 456689999999999887 433 344444555 555444554 455 11111 11 122222
Q ss_pred HHHHHHhhccC--CCCHHHHHHHHhhhcccC---cHHHHHHHHHhCCChHH---HHHHHHHHHhCCCCCCCHHHHHHHHH
Q 011102 169 SLARDIKGLDS--HKDVAEVLDKCGRFLRKG---SLSFTVRELGHMNLPER---ALQTFCWAQKQPHLFPDDRLLASTVE 240 (493)
Q Consensus 169 ~l~~~l~~~~~--~~~~~~a~~~~~~m~~~~---~~~~li~~~~~~g~~~~---A~~l~~~m~~~~g~~pd~~t~~~li~ 240 (493)
.+...+..... .++.++|+..+.+....+ .+..+-..|...+..++ +.+.+...... |. ...+..+-.
T Consensus 74 ~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-g~---~~a~~~Lg~ 149 (452)
T 3e4b_A 74 RLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-GY---PEAGLAQVL 149 (452)
T ss_dssp HHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-TC---TTHHHHHHH
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-CC---HHHHHHHHH
Confidence 33332222211 247889999988776655 66666667766665444 44444444433 32 234455556
Q ss_pred HHHHcCCCchhhh----HHHhhccCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcC--
Q 011102 241 VLARHHELKVPFK----LENFVSLASKGVLEATAKGFVKGG---NLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKN-- 311 (493)
Q Consensus 241 ~~~~~g~~~~~~~----l~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~-- 311 (493)
.+...+.++.+.. +..-....+...+..|-..|.+.| +.++|++.|++..+.|. ++...+..+-..|...
T Consensus 150 ~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 150 LYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATL 228 (452)
T ss_dssp HHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGG
T ss_pred HHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC
Confidence 6666665332221 111112234447888888999999 99999999999999883 3444334444444221
Q ss_pred -CCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---
Q 011102 312 -PDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKV-G--IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK--- 384 (493)
Q Consensus 312 -~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g--- 384 (493)
.++.++|...|+... . | +...+..+-.. | ...+++++|.+.|++..+.| +...+..|-..|. .|
T Consensus 229 ~~~d~~~A~~~~~~aa-~-g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA-P-G---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp SSCCHHHHHHHHHHHG-G-G---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCHHHHHHHHHHHc-C-C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 168999999999987 3 3 34455555554 3 45899999999999988776 6777777777777 45
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cC
Q 011102 385 --KCREALTVVWNMEASNCLFDLPAYRVVIKLFVA----LNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA----SG 454 (493)
Q Consensus 385 --~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g 454 (493)
+.++|.+.|++.. . -+...+..|=..|.. ..+.++|..+|+.-.+.|.. + .+..|-..|.. ..
T Consensus 300 ~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN-S--ADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp CCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT-T--HHHHHHHHHHSCTTBCC
T ss_pred CCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH-H--HHHHHHHHHHhCCCCCC
Confidence 9999999999876 3 355666666666655 34999999999999887752 3 34444445543 45
Q ss_pred CHHHHHHHHHHHHHCCCc
Q 011102 455 RLAKCRDVCKEAEMAGFK 472 (493)
Q Consensus 455 ~~~~A~~l~~~m~~~g~~ 472 (493)
+.++|...|+...+.|..
T Consensus 373 d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp CHHHHHHHHHHHHTTCCH
T ss_pred CHHHHHHHHHHHHHCCCH
Confidence 899999999998887754
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.44 E-value=8.3e-06 Score=77.67 Aligned_cols=175 Identities=9% Similarity=-0.089 Sum_probs=132.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhc---CCCCCC-HHHHHHHHHHHHHcCCHHH
Q 011102 278 NLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQR---DDLNLS-QQDCTAIMKVGIRLQKFGV 353 (493)
Q Consensus 278 ~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~---~g~~p~-~~~~~~li~~~~~~g~~~~ 353 (493)
++++|...|++. ...|... |++++|.+.|.+.... .|-.++ ..+|+.+-..|.+.|++++
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLR-KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHT-TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 488898888876 2346667 9999999999876442 121111 4688999999999999999
Q ss_pred HHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHH
Q 011102 354 VESLFHWFTHS----GRDP-TVVMYTTLIHSRLSE-KKCREALTVVWNMEAS----NCLFD-LPAYRVVIKLFVALNDIS 422 (493)
Q Consensus 354 A~~l~~~m~~~----g~~p-~~~ty~~li~~~~~~-g~~~~A~~l~~~M~~~----gi~pd-~~ty~~li~~~~~~g~~~ 422 (493)
|...|++..+. |-.. -..+|+.+-..|... |++++|++.|++..+. +-.+. ..+|+.+-..|.+.|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 99999876532 2111 145788999999996 9999999999987653 11111 356888889999999999
Q ss_pred HHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 423 RAIRYFSKLKEAGFCPTY------DIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 423 ~A~~~~~~m~~~g~~p~~------~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
+|...|++..+....... ..|..+..++...|++++|...|++..+
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999865433221 2577788889999999999999999764
No 88
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.42 E-value=2.7e-05 Score=76.84 Aligned_cols=224 Identities=8% Similarity=-0.039 Sum_probs=157.1
Q ss_pred ccCCCCHHHHHHHHhhhccc-----------CcHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc
Q 011102 177 LDSHKDVAEVLDKCGRFLRK-----------GSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARH 245 (493)
Q Consensus 177 ~~~~~~~~~a~~~~~~m~~~-----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~ 245 (493)
+...|+.++|+..+.+.... ..+..+-..|...|+++.|+..+....... -+.
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~----------------~~~ 174 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY----------------QNH 174 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------HTS
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH----------------HhC
Confidence 34579999999999865432 166677778899999999999998776420 000
Q ss_pred CCCchhhhHHHhhccCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhcCCCCHHHHHH
Q 011102 246 HELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDG----GRML-DPSIYAKLILELGKNPDKYMLVMT 320 (493)
Q Consensus 246 g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~t~~~li~~~~~~~~~~~~a~~ 320 (493)
+.... ....+++.+-..|...|++++|.+.|++..+. |-.+ ...++..+-..|... |++++|.+
T Consensus 175 ~~~~~----------~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-~~~~~A~~ 243 (378)
T 3q15_A 175 PLYSI----------RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS-GDDQMAVE 243 (378)
T ss_dssp TTCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHH
T ss_pred CCchh----------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-CCHHHHHH
Confidence 10000 11235667778888889999998888877652 2111 123566677778888 99999999
Q ss_pred HHHHHhh-----cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHcCCC---HHH
Q 011102 321 LLDELGQ-----RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHS----GRDPTVVMYTTLIHSRLSEKK---CRE 388 (493)
Q Consensus 321 l~~~m~~-----~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~ty~~li~~~~~~g~---~~~ 388 (493)
.+++... . . .....++..+-..|.+.|++++|...|++..+. +-......++.+-..|...++ ..+
T Consensus 244 ~~~~al~~~~~~~-~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~ 321 (378)
T 3q15_A 244 HFQKAAKVSREKV-P-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHD 321 (378)
T ss_dssp HHHHHHHHHHHHC-G-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHHHHHhhC-C-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 9988765 3 1 222667888889999999999999999987653 222234556777777777888 777
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 389 ALTVVWNMEASNCLFDL-PAYRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 389 A~~l~~~M~~~gi~pd~-~ty~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
|+..+++ .+..|+. ..+..+-..|.+.|+.++|...|++..
T Consensus 322 al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 322 LLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8777776 3333333 356677788999999999999998875
No 89
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.38 E-value=4.5e-05 Score=72.43 Aligned_cols=212 Identities=10% Similarity=-0.021 Sum_probs=98.8
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhccCcHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 011102 218 TFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKG---VLEATAKGFVKGGNLKLAWKLLMVAKDGG- 293 (493)
Q Consensus 218 l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g- 293 (493)
.+..+.. +...|+..+...+...+.-. . ..+.......+.. .+...+..+.+.|++++|.+++++..+..
T Consensus 33 ~~s~~e~-g~~~~~~~~l~~i~~~l~~~----~-~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~ 106 (293)
T 3u3w_A 33 EVSRIES-GAVYPSMDILQGIAAKLQIP----I-IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEE 106 (293)
T ss_dssp HHHHHHT-TSCCCCHHHHHHHHHHHTCC----T-HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHC-CCCCCCHHHHHHHHHHhCcC----H-HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccc
Confidence 3444443 24567777666666655421 1 1221111111122 23333556666777777777777666532
Q ss_pred CCCCHH----HHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011102 294 RMLDPS----IYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS----QQDCTAIMKVGIRLQKFGVVESLFHWFTHSG 365 (493)
Q Consensus 294 ~~pd~~----t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 365 (493)
..|+.. .+..+...+... +++++|...|++......-..+ ..+|+.+-..|...|++++|...|++..+.
T Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~- 184 (293)
T 3u3w_A 107 YHPEFQQFLQWQYYVAAYVLKK-VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ- 184 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred CChHHHHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-
Confidence 112211 112233333333 5556666655555442111111 123444444444555555555544444310
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCCCC
Q 011102 366 RDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS-NCLFDL-PAYRVVIKLFVALNDISRAIRYFSKLK----EAGFCPT 439 (493)
Q Consensus 366 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~-gi~pd~-~ty~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~ 439 (493)
+ .+. +..+.. .+|..+-..|.+.|++++|..++++.. +.+..+.
T Consensus 185 ---------------------------~---~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 185 ---------------------------L---EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp ---------------------------H---HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred ---------------------------H---HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 0 011 111111 245556666666666666666666544 2222222
Q ss_pred -HHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 011102 440 -YDIYRDMIRIFMASG-RLAKCRDVCKEAE 467 (493)
Q Consensus 440 -~~ty~~li~~~~~~g-~~~~A~~l~~~m~ 467 (493)
..+|..+-.+|.+.| ++++|.+.+++..
T Consensus 235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 456666666677777 3577776666654
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.34 E-value=3.8e-05 Score=71.39 Aligned_cols=61 Identities=13% Similarity=0.107 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHC
Q 011102 409 RVVIKLFVALNDISRAIRYFSKLKEAGFC-P-TYDIYRDMIRIFMAS----------GRLAKCRDVCKEAEMA 469 (493)
Q Consensus 409 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~ty~~li~~~~~~----------g~~~~A~~l~~~m~~~ 469 (493)
..+-..|.+.|++++|...|+...+..-. + ....+..+..+|... |++++|.+.|++..+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 45567788999999999999998854311 1 245677778888766 8999999999999864
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.33 E-value=3.6e-05 Score=71.54 Aligned_cols=167 Identities=12% Similarity=0.025 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC-HHH
Q 011102 263 KGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLD----PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS-QQD 337 (493)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~-~~~ 337 (493)
...+-.+...+.+.|++++|...|+++.+.. |+ ...+..+-..|.+. |++++|...|+...+...-.+. ...
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQN-KEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3455566777888999999999999998754 43 56777777888888 9999999999998775211222 445
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCC-HHHH-----------------HHHHHHHHcCCCHHHHHH
Q 011102 338 CTAIMKVGIR--------LQKFGVVESLFHWFTHSGRDPT-VVMY-----------------TTLIHSRLSEKKCREALT 391 (493)
Q Consensus 338 ~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~-~~ty-----------------~~li~~~~~~g~~~~A~~ 391 (493)
+..+-.+|.+ .|++++|...|++..+.. |+ ...+ ..+-..|.+.|++++|..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 6677778888 899999999999987652 32 2223 456778999999999999
Q ss_pred HHHHHHHCCCC-C-CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHC
Q 011102 392 VVWNMEASNCL-F-DLPAYRVVIKLFVAL----------NDISRAIRYFSKLKEA 434 (493)
Q Consensus 392 l~~~M~~~gi~-p-d~~ty~~li~~~~~~----------g~~~~A~~~~~~m~~~ 434 (493)
.|++..+..-. + ....+..+..+|.+. |++++|...|+...+.
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 99998765321 1 234667777777765 8999999999998854
No 92
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.33 E-value=0.00014 Score=68.85 Aligned_cols=156 Identities=9% Similarity=-0.104 Sum_probs=94.5
Q ss_pred HHHHHHHHcCCCchhhhHHHhhcc-------Cc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHH
Q 011102 237 STVEVLARHHELKVPFKLENFVSL-------AS----KGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRM-LD----PSI 300 (493)
Q Consensus 237 ~li~~~~~~g~~~~~~~l~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~t 300 (493)
..+..+.+.|+++.+..+ +... ++ ...+..+...+...|++++|+..|++..+.... .+ ..+
T Consensus 80 ~~i~~~~~~~~y~~a~~~--~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNK--VWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHTTCHHHHHHH--HHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH--HHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 346677888885544433 3221 11 113455777788889999999999999984322 33 236
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhhc----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCC-H
Q 011102 301 YAKLILELGKNPDKYMLVMTLLDELGQR----DDLNLS-QQDCTAIMKVGIRLQKFGVVESLFHWFTH----SGRDPT-V 370 (493)
Q Consensus 301 ~~~li~~~~~~~~~~~~a~~l~~~m~~~----~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~ 370 (493)
|+.+-..|... |++++|...|++..+. ++..+. ..+|..+...|.+.|++++|.+.+++..+ .+..+. .
T Consensus 158 ~~~lg~~y~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 158 ENAIANIYAEN-GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 88888899999 9999999999988642 011111 22556666667777777777776665442 111121 3
Q ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHH
Q 011102 371 VMYTTLIHSRLSEKK-CREALTVVWN 395 (493)
Q Consensus 371 ~ty~~li~~~~~~g~-~~~A~~l~~~ 395 (493)
.+|..+-..|.+.|+ .++|.+.+++
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 444444455555552 3555544443
No 93
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.33 E-value=6.6e-05 Score=67.69 Aligned_cols=178 Identities=12% Similarity=0.052 Sum_probs=116.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC----CHHHHHH
Q 011102 281 LAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQ----KFGVVES 356 (493)
Q Consensus 281 ~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~ 356 (493)
+|.+.|++..+.| ++..+..+-..|... +++++|...|+...+. | +...+..|-..|.. + +.++|.+
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~-~~~~~A~~~~~~a~~~-g---~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSS-GDYQKAEYWAQKAAAQ-G---DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHT-T---CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 4566666666654 566666666666666 7777777777776654 2 45555556555655 5 6777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHH
Q 011102 357 LFHWFTHSGRDPTVVMYTTLIHSRLS----EKKCREALTVVWNMEASNCL-FDLPAYRVVIKLFVA----LNDISRAIRY 427 (493)
Q Consensus 357 l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~M~~~gi~-pd~~ty~~li~~~~~----~g~~~~A~~~ 427 (493)
.|++..+.| +..++..|-..|.. .++.++|.+.|++..+.|.. -+...+..|=..|.. .++.++|..+
T Consensus 75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 777776543 55666666666666 67788888888877665431 014566666666766 6778888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHCCCc
Q 011102 428 FSKLKEAGFCPTYDIYRDMIRIFMAS-G-----RLAKCRDVCKEAEMAGFK 472 (493)
Q Consensus 428 ~~~m~~~g~~p~~~ty~~li~~~~~~-g-----~~~~A~~l~~~m~~~g~~ 472 (493)
|+.-.+.+ .+...+..|-..|... | +.++|.+.|+...+.|..
T Consensus 152 ~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 152 FKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 88877652 2334555566666543 2 788888888888777744
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.31 E-value=3.5e-05 Score=73.35 Aligned_cols=166 Identities=13% Similarity=-0.000 Sum_probs=124.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCC-----CH
Q 011102 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRM-LDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNL-----SQ 335 (493)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p-----~~ 335 (493)
+..++..+..++...|++++|++++.+-...|-. -+...+..++..+.+. |+.+.|.+.+++|.+. .| +.
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~-~r~d~A~k~l~~~~~~---~~d~~~~~d 174 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLN-NNVSTASTIFDNYTNA---IEDTVSGDN 174 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH---SCHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhc---Cccccccch
Confidence 4445567888899999999999999988766531 2556777888999999 9999999999999765 45 35
Q ss_pred HHHHHHHHHHH--HcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----CC---CC
Q 011102 336 QDCTAIMKVGI--RLQ--KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS-----NC---LF 403 (493)
Q Consensus 336 ~~~~~li~~~~--~~g--~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~-----gi---~p 403 (493)
.+...+..++. ..| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+. +. .|
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p 252 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL 252 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCC
Confidence 56666666633 334 899999999999755 466445556666899999999999999876542 11 23
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 011102 404 -DLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435 (493)
Q Consensus 404 -d~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g 435 (493)
|..+...+|......|+ +|.++++++++..
T Consensus 253 ~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 253 YKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 45666567766666787 8999999998654
No 95
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.30 E-value=2.3e-05 Score=75.12 Aligned_cols=166 Identities=8% Similarity=-0.018 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhc---CCCCC-CH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRML-D----PSIYAKLILELGKNPDKYMLVMTLLDELGQR---DDLNL-SQ 335 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d----~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~---~g~~p-~~ 335 (493)
.|+.....|...|++++|.+.|.+..+..... + ..+|+.+-..|.+. |++++|...|++.... .|-.. -.
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDL-QRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35555555666666666666666555422110 1 22455555555555 6666666666654322 01000 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCCH-
Q 011102 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHS----GRDP-TVVMYTTLIHSRLSEKKCREALTVVWNMEAS----NCLFDL- 405 (493)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----gi~pd~- 405 (493)
.+++.+-..|.+ |++++|++.|++..+. |-.. ...+|+.+-..|.+.|++++|++.|++..+. +..++.
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 344455555555 6666666666554321 1100 1244555566666666666666666655431 111111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 406 PAYRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 406 ~ty~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
.++..+...+...|++++|...|++..
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 134444445555566666666666555
No 96
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.29 E-value=2.6e-05 Score=81.60 Aligned_cols=154 Identities=8% Similarity=-0.143 Sum_probs=100.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011102 276 GGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVE 355 (493)
Q Consensus 276 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 355 (493)
.|++++|.+.|++..+.. .-+...|..+-..+.+. |++++|.+.+++..+. -.-+...|..+-..|.+.|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGM-GDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 467888888888776643 12356777777777787 8888888888887664 2235667778888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHH
Q 011102 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL---NDISRAIRYFSKLK 432 (493)
Q Consensus 356 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~---g~~~~A~~~~~~m~ 432 (493)
+.|++..+.. +-+...|..+-..|.+.|++++|.+.+++..+..- -+...+..+...+... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 8888876542 33567788888888888888888888888766421 2456777778888888 88888888888877
Q ss_pred HCC
Q 011102 433 EAG 435 (493)
Q Consensus 433 ~~g 435 (493)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 544
No 97
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.27 E-value=0.00039 Score=70.49 Aligned_cols=267 Identities=12% Similarity=-0.013 Sum_probs=170.1
Q ss_pred CHHHHHHHHhhhcccC--cHHHHHHHHHhCC-----ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCch-hhh
Q 011102 182 DVAEVLDKCGRFLRKG--SLSFTVRELGHMN-----LPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKV-PFK 253 (493)
Q Consensus 182 ~~~~a~~~~~~m~~~~--~~~~li~~~~~~g-----~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~-~~~ 253 (493)
+..+|+..|.+..+.. .+..+-..+...| +.++|++.|+...+. |.. + .+..+-..|...+..+. .++
T Consensus 53 d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~-g~~-~--A~~~Lg~~y~~~~~~~~~~~a 128 (452)
T 3e4b_A 53 QIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN-GEG-N--TLIPLAMLYLQYPHSFPNVNA 128 (452)
T ss_dssp ------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT-TCS-S--CHHHHHHHHHHCGGGCTTCCH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC-CCH-H--HHHHHHHHHHhCCCCCCCHHH
Confidence 4488888888655442 4444444344554 778999999998876 533 2 45556666655544222 222
Q ss_pred HHHh---hccCcHHHHHHHHHHHHhcCCHH----HHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCC---CHHHHHHHHH
Q 011102 254 LENF---VSLASKGVLEATAKGFVKGGNLK----LAWKLLMVAKDGGRMLDPSIYAKLILELGKNPD---KYMLVMTLLD 323 (493)
Q Consensus 254 l~~~---~~~~~~~~~~~li~~~~~~g~~~----~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~---~~~~a~~l~~ 323 (493)
+..+ ....+...+..|-..|...+.++ .+..+++.... .++..+..|-..|.+. | +.++|++.|+
T Consensus 129 ~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~-g~~~~~~~A~~~~~ 203 (452)
T 3e4b_A 129 QQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKK-QQPEQQAELLKQME 203 (452)
T ss_dssp HHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHc-CCcccHHHHHHHHH
Confidence 2222 22334556777778888877544 44444444333 2333777777788887 8 9999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HcCCCHHHHHHHHHHH
Q 011102 324 ELGQRDDLNLSQQDCTAIMKVGIRL----QKFGVVESLFHWFTHSGRDPTVVMYTTLIHS-R--LSEKKCREALTVVWNM 396 (493)
Q Consensus 324 ~m~~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~-~--~~~g~~~~A~~l~~~M 396 (493)
...+. | .++...+..+-..|... +++++|.+.|++.. .| +...+..|-.. | ...++.++|.+.|++.
T Consensus 204 ~aa~~-g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~A 277 (452)
T 3e4b_A 204 AGVSR-G-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNG 277 (452)
T ss_dssp HHHHT-T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHH
T ss_pred HHHHC-C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 98876 3 35555556666666554 78999999999987 33 44555555555 3 4589999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 011102 397 EASNCLFDLPAYRVVIKLFVALN-----DISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA----SGRLAKCRDVCKEAE 467 (493)
Q Consensus 397 ~~~gi~pd~~ty~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~ 467 (493)
.+.| +...+..|=..|. .| +.++|.++|+.-. . -+...+..|-..|.. ..++++|.+.|+...
T Consensus 278 a~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 349 (452)
T 3e4b_A 278 RAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAA 349 (452)
T ss_dssp HHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 8877 5666776766666 55 9999999999877 3 356666667666665 349999999999988
Q ss_pred HCCC
Q 011102 468 MAGF 471 (493)
Q Consensus 468 ~~g~ 471 (493)
+.|.
T Consensus 350 ~~g~ 353 (452)
T 3e4b_A 350 RNGQ 353 (452)
T ss_dssp TTTC
T ss_pred hhCh
Confidence 7764
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.25 E-value=6e-05 Score=67.67 Aligned_cols=136 Identities=10% Similarity=0.025 Sum_probs=84.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHc
Q 011102 340 AIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF-DLPAYRVVIKLFVAL 418 (493)
Q Consensus 340 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~p-d~~ty~~li~~~~~~ 418 (493)
.+-..|.+.|++++|...|++..+.. +-+...|..+-..|...|++++|.+.|++..+. .| +..+|..+-..|...
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 36667777788888888887776542 235677777778888888888888888877664 23 345666666665544
Q ss_pred CC--HHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHh
Q 011102 419 ND--ISRAIRYFSKLKEAGFCPTYDI--YRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484 (493)
Q Consensus 419 g~--~~~A~~~~~~m~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~~ 484 (493)
|+ .+.+...++... .|+... +..+-.++...|++++|...|++..+ +.|+......|.++
T Consensus 136 ~~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~i 199 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHHH
Confidence 43 334444444432 233332 23333445567788888888887764 56777666666554
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.23 E-value=0.00016 Score=65.61 Aligned_cols=183 Identities=13% Similarity=0.014 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCH-HHHHHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRM-LD-PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQ-QDCTAI 341 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd-~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~-~~~~~l 341 (493)
.+-.+...+.+.|++++|...|+++.+..-. |. ...+..+..++.+. |++++|...|++..+...-.+.. ..+-.+
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN-ADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3445566778888888888888888774311 11 34666677788888 88888888888877642111221 133333
Q ss_pred HHHHHH------------------cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 011102 342 MKVGIR------------------LQKFGVVESLFHWFTHSGRDPTV-VMYTTLIHSRLSEKKCREALTVVWNMEASNCL 402 (493)
Q Consensus 342 i~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~ 402 (493)
-.+|.+ .|++++|...|+++.+. .|+. ..+.+. ..+..+...
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~--------------~~l~~~~~~--- 145 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDAT--------------KRLVFLKDR--- 145 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHH--------------HHHHHHHHH---
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHH--------------HHHHHHHHH---
Confidence 333333 24455555555555432 1221 111110 000000000
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 011102 403 FDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT----YDIYRDMIRIFMASGRLAKCRDVCKEAEMAG 470 (493)
Q Consensus 403 pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 470 (493)
-....-.+-..|.+.|++++|...|+.+.+.- |+ ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 146 -~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 146 -LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 00011234556889999999999999988543 33 2568889999999999999999999887753
No 100
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.23 E-value=2.5e-05 Score=74.93 Aligned_cols=187 Identities=12% Similarity=-0.036 Sum_probs=101.6
Q ss_pred CCChHHHHHHHHHHHhC-----CCCCCCHH----HHHHHHHHHHHcCCCchhhhH-----HHhhccCc----HHHHHHHH
Q 011102 209 MNLPERALQTFCWAQKQ-----PHLFPDDR----LLASTVEVLARHHELKVPFKL-----ENFVSLAS----KGVLEATA 270 (493)
Q Consensus 209 ~g~~~~A~~l~~~m~~~-----~g~~pd~~----t~~~li~~~~~~g~~~~~~~l-----~~~~~~~~----~~~~~~li 270 (493)
.|++++|.+++++..+. .+..+|.. .|......|...|+++.+... ..+....+ ..+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777777665531 01123422 355555566666664332211 11111211 23567777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcC---CCCC-CHHHHHHH
Q 011102 271 KGFVKGGNLKLAWKLLMVAKDGGRML-D----PSIYAKLILELGKNPDKYMLVMTLLDELGQRD---DLNL-SQQDCTAI 341 (493)
Q Consensus 271 ~~~~~~g~~~~A~~l~~~m~~~g~~p-d----~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~---g~~p-~~~~~~~l 341 (493)
..|.+.|++++|...|++..+.-... + ..+++.+-..|. . |++++|+..|++..... +-.. ...+++.+
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME-P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT-T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 77777777777777777666532111 1 123444444443 3 77777777777654420 1000 13456666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011102 342 MKVGIRLQKFGVVESLFHWFTHS----GRDPT-VVMYTTLIHSRLSEKKCREALTVVWNME 397 (493)
Q Consensus 342 i~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M~ 397 (493)
-..|.+.|++++|.+.|++..+. +..++ ...|..+...+...|++++|...|++..
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77777777777777777766532 21111 1255566666666677777777777765
No 101
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.22 E-value=6.6e-05 Score=67.07 Aligned_cols=126 Identities=8% Similarity=-0.031 Sum_probs=76.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011102 302 AKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRL 381 (493)
Q Consensus 302 ~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~ 381 (493)
..+-..+... |++++|...|++.. .|+...|..+...|.+.|++++|.+.|++..+.. +.+...|..+-..|.
T Consensus 10 ~~~g~~~~~~-~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 10 WNEGVLAADK-KDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 3444455566 67777776666542 3456666666667777777777777776665432 334566666666677
Q ss_pred cCCCHHHHHHHHHHHHHCCC--------------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 382 SEKKCREALTVVWNMEASNC--------------LFD-LPAYRVVIKLFVALNDISRAIRYFSKLKEA 434 (493)
Q Consensus 382 ~~g~~~~A~~l~~~M~~~gi--------------~pd-~~ty~~li~~~~~~g~~~~A~~~~~~m~~~ 434 (493)
..|++++|.+.|++..+..- .|+ ...+..+-..|.+.|++++|...|+...+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 77777777777766655321 111 145555666666666666666666666543
No 102
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.21 E-value=0.00012 Score=69.41 Aligned_cols=166 Identities=11% Similarity=-0.023 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHhcCCCCHHHHHHHHHHHhhcC--CCCCC--
Q 011102 264 GVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDP-----SIYAKLILELGKNPDKYMLVMTLLDELGQRD--DLNLS-- 334 (493)
Q Consensus 264 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~--g~~p~-- 334 (493)
..+...+..+...|++++|.+.+++..+..-..+. ..+..+...+... |++++|...+++..... ...+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK-VDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34556777888889999999888877764322111 1122333344555 78888888877765421 11111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---c-CCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC
Q 011102 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTH---S-GRDP--TVVMYTTLIHSRLSEKKCREALTVVWNMEAS----NCLFD 404 (493)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~-g~~p--~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----gi~pd 404 (493)
..+|+.+-..|...|++++|...|++..+ . +..+ ...+|+.+...|.+.|++++|++.+++..+. +....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 34667777777777777777777776541 1 1111 1146666666677777777777666664432 11111
Q ss_pred -HHHHHHHHHHHHHcCCHHHH-HHHHHH
Q 011102 405 -LPAYRVVIKLFVALNDISRA-IRYFSK 430 (493)
Q Consensus 405 -~~ty~~li~~~~~~g~~~~A-~~~~~~ 430 (493)
..+|..+-..|.+.|+.++| ...+++
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 34555555666666666666 444444
No 103
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.17 E-value=0.00012 Score=58.46 Aligned_cols=95 Identities=9% Similarity=0.055 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011102 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415 (493)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~ 415 (493)
..|..+...|.+.|++++|.++|+++.+.. +.+..+|..+...+.+.|++++|..+++++.+.. ..+..++..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444455555555555555555544331 2234444555555555555555555555544321 12334444444445
Q ss_pred HHcCCHHHHHHHHHHHH
Q 011102 416 VALNDISRAIRYFSKLK 432 (493)
Q Consensus 416 ~~~g~~~~A~~~~~~m~ 432 (493)
.+.|++++|...|+++.
T Consensus 88 ~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHH
Confidence 55555555555555444
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.15 E-value=0.00017 Score=65.44 Aligned_cols=176 Identities=10% Similarity=-0.028 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHcCCCchhhhHHHhhcc----Cc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----H
Q 011102 232 DRLLASTVEVLARHHELKVPFKLENFVSL----AS----KGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDP----S 299 (493)
Q Consensus 232 ~~t~~~li~~~~~~g~~~~~~~l~~~~~~----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~ 299 (493)
...+-.+...+.+.|+++ +++..|... |+ ...+..+...|.+.|++++|...|++..+.. |+. .
T Consensus 4 ~~~~~~~a~~~~~~g~~~--~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~ 79 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWR--QAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDY 79 (225)
T ss_dssp HHHHHHHHHHHHHHTCHH--HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHH
T ss_pred HHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHH
Confidence 344555566778888854 444444432 22 2467788899999999999999999998754 432 1
Q ss_pred HHHHHHHHHhc------------------CCCCHHHHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 011102 300 IYAKLILELGK------------------NPDKYMLVMTLLDELGQRDDLNLSQ-QDCTAIMKVGIRLQKFGVVESLFHW 360 (493)
Q Consensus 300 t~~~li~~~~~------------------~~~~~~~a~~l~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~ 360 (493)
.+-.+-..+.+ . |++++|...|+++.+. .|+. ..+.+.. +.+ .+...
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~---~P~~~~a~~a~~----~l~------~~~~~ 145 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDP-QQARAAFSDFSKLVRG---YPNSQYTTDATK----RLV------FLKDR 145 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CC-HHHHHHHHHHHHHHTT---CTTCTTHHHHHH----HHH------HHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCc-HHHHHHHHHHHHHHHH---CcCChhHHHHHH----HHH------HHHHH
Confidence 33333334432 4 7899999999999875 2432 2222111 100 11111
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 011102 361 FTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL----PAYRVVIKLFVALNDISRAIRYFSKLKEAG 435 (493)
Q Consensus 361 m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~----~ty~~li~~~~~~g~~~~A~~~~~~m~~~g 435 (493)
+. ...-.+-..|.+.|++++|...|+++.+. .|+. ..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 146 ~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 146 LA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 11 11234556677888888888888887764 2332 457777888888888888888888877554
No 105
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.15 E-value=0.00016 Score=68.59 Aligned_cols=167 Identities=8% Similarity=0.010 Sum_probs=122.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCC--H
Q 011102 300 IYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQ----QDCTAIMKVGIRLQKFGVVESLFHWFTHSG---RDPT--V 370 (493)
Q Consensus 300 t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~ 370 (493)
.+...+..+... |++++|.+.+.+..+.....++. ..+..+...|...|++++|.+.|++..+.. ..+. .
T Consensus 77 ~l~~~~~~~~~~-~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQ-KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHh-hhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 344556677888 99999999998876652221111 223445566778899999999999876432 1222 4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-
Q 011102 371 VMYTTLIHSRLSEKKCREALTVVWNMEAS-NCLFD-----LPAYRVVIKLFVALNDISRAIRYFSKLKEA----GFCPT- 439 (493)
Q Consensus 371 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~-gi~pd-----~~ty~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~- 439 (493)
.+|+.+-..|...|++++|...|++..+. ...|+ ..+|..+-..|.+.|++++|..++++..+. +....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 58999999999999999999999987631 11122 258888899999999999999999987632 21111
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 011102 440 YDIYRDMIRIFMASGRLAKC-RDVCKEAE 467 (493)
Q Consensus 440 ~~ty~~li~~~~~~g~~~~A-~~l~~~m~ 467 (493)
..+|..+-..|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 67788999999999999999 77677654
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.14 E-value=6.6e-05 Score=78.51 Aligned_cols=134 Identities=8% Similarity=-0.133 Sum_probs=112.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 011102 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341 (493)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~l 341 (493)
+...|..+-..|.+.|++++|.+.|++..+.. .-+...|..+-..|... |++++|.+.+++..+. -.-+...+..+
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~--~p~~~~~~~~l 97 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQ-QRHAEAAVLLQQASDA--APEHPGIALWL 97 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 46688899999999999999999999988854 23467788888888898 9999999999998765 23457788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHCC
Q 011102 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE---KKCREALTVVWNMEASN 400 (493)
Q Consensus 342 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~---g~~~~A~~l~~~M~~~g 400 (493)
-..|.+.|++++|.+.|++..+.. .-+...+..+...+... |+.++|.+.+++..+.+
T Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 98 GHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999999999999999999987653 34577888999999999 99999999999987754
No 107
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.14 E-value=0.00015 Score=61.55 Aligned_cols=128 Identities=8% Similarity=-0.012 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~ 416 (493)
.+..+-..+...|++++|...|++..+.. +.+...|..+...+...|++++|.+.+++..+.. ..+...|..+-..+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 45566667777888888888888766542 3356777788888888888888888888776542 234667777777888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHH
Q 011102 417 ALNDISRAIRYFSKLKEAGFCPTYDIYR--DMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 417 ~~g~~~~A~~~~~~m~~~g~~p~~~ty~--~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
+.|++++|...|++..+..- -+...+. .+...+.+.|++++|.+.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888775432 2344443 33344677788888888877654
No 108
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.13 E-value=3.4e-05 Score=68.20 Aligned_cols=154 Identities=11% Similarity=-0.012 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHcCCCHH
Q 011102 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTH----SGRDP-TVVMYTTLIHSRLSEKKCR 387 (493)
Q Consensus 313 ~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~ty~~li~~~~~~g~~~ 387 (493)
|++++|.++++.+... .......+..+-..|...|++++|...|++..+ .|..+ ...+++.+-..|...|+++
T Consensus 6 g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 6 HDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp -CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 6666666644444322 122345566666666677777777777666543 11111 2355666667777777777
Q ss_pred HHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHHcCCH
Q 011102 388 EALTVVWNMEAS----NCLF--DLPAYRVVIKLFVALNDISRAIRYFSKLKE----AGFC-PTYDIYRDMIRIFMASGRL 456 (493)
Q Consensus 388 ~A~~l~~~M~~~----gi~p--d~~ty~~li~~~~~~g~~~~A~~~~~~m~~----~g~~-p~~~ty~~li~~~~~~g~~ 456 (493)
+|.+.+++..+. +-.| ....+..+-..+...|++++|...+++..+ .+-. .-..++..+-..+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777777765432 2111 123456666677777888888777776552 1111 0123356677777788888
Q ss_pred HHHHHHHHHHHH
Q 011102 457 AKCRDVCKEAEM 468 (493)
Q Consensus 457 ~~A~~l~~~m~~ 468 (493)
++|.+.+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888887777653
No 109
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.13 E-value=0.00014 Score=64.90 Aligned_cols=129 Identities=6% Similarity=-0.140 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKV 344 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~ 344 (493)
.+..+-..+.+.|++++|.+.|++. +.|+...|..+-..+.+. |++++|...|++.... ...+...|..+-..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTIL-KNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 3456677788999999999999876 357889999999999999 9999999999998775 23467889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC--------------CC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 011102 345 GIRLQKFGVVESLFHWFTHSGR--------------DP-TVVMYTTLIHSRLSEKKCREALTVVWNMEASN 400 (493)
Q Consensus 345 ~~~~g~~~~A~~l~~~m~~~g~--------------~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g 400 (493)
|.+.|++++|.+.|++..+..- .| +...|..+-..|.+.|++++|.+.|++..+..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999886421 11 23778899999999999999999999987653
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.13 E-value=0.00022 Score=63.97 Aligned_cols=167 Identities=11% Similarity=-0.030 Sum_probs=119.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHH----------------HHHHHhcCCCCHHHHHHHHHHHhhcCCC
Q 011102 269 TAKGFVKGGNLKLAWKLLMVAKDGGRMLD-PSIYAK----------------LILELGKNPDKYMLVMTLLDELGQRDDL 331 (493)
Q Consensus 269 li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~----------------li~~~~~~~~~~~~a~~l~~~m~~~~g~ 331 (493)
....+.+.|++++|...|++..+.. |+ ...|.. +-..|.+. |++++|...|++..+. -
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~--~ 84 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKN-RNYDKAYLFYKELLQK--A 84 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH--C
Confidence 3345678899999999999988743 43 334555 67778888 9999999999998775 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCCCHHH--
Q 011102 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK--CREALTVVWNMEASNCLFDLPA-- 407 (493)
Q Consensus 332 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~--~~~A~~l~~~M~~~gi~pd~~t-- 407 (493)
.-+...+..+-..|...|++++|...|++..+.. +-+..+|..+-..|...|+ ...+...+.... .|+...
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a 159 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKMQYA 159 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCchhHH
Confidence 3467889999999999999999999999987652 3367888888888876654 344555555442 344433
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011102 408 YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMI 447 (493)
Q Consensus 408 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li 447 (493)
+...-.++...|++++|...|++..+ +.|+......+.
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 33333445668999999999999875 458866554443
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.12 E-value=4.1e-05 Score=66.67 Aligned_cols=152 Identities=8% Similarity=0.034 Sum_probs=68.7
Q ss_pred HhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCCH
Q 011102 308 LGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHS-RLSEKKC 386 (493)
Q Consensus 308 ~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~-~~~~g~~ 386 (493)
+.+. |++++|...|++..+. -.-+...+..+-..|.+.|++++|...|+...+. .|+...+..+... +...+..
T Consensus 16 ~~~~-g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~ 90 (176)
T 2r5s_A 16 LLQQ-GEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQAAE 90 (176)
T ss_dssp HHHT-TCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHc-CCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhccc
Confidence 3344 4555555555443322 1112334444444555555555555555444322 1222211111100 1111112
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011102 387 REALTVVWNMEASNCLF-DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP-TYDIYRDMIRIFMASGRLAKCRDVCK 464 (493)
Q Consensus 387 ~~A~~l~~~M~~~gi~p-d~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~ 464 (493)
.+|.+.+++..+. .| +...+..+-..+...|++++|...|++..+..-.+ +...+..+...|...|+.++|...|+
T Consensus 91 ~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 91 SPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp CHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred chHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 2345555554432 23 24555555556666666666666666655433211 23455556666666666666666655
Q ss_pred HH
Q 011102 465 EA 466 (493)
Q Consensus 465 ~m 466 (493)
+.
T Consensus 169 ~a 170 (176)
T 2r5s_A 169 RQ 170 (176)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.11 E-value=8.8e-05 Score=70.34 Aligned_cols=154 Identities=12% Similarity=0.037 Sum_probs=66.1
Q ss_pred HHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHcCC
Q 011102 306 LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI-HSRLSEK 384 (493)
Q Consensus 306 ~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li-~~~~~~g 384 (493)
..+.+. |++++|.+.|++.... -.-+...+..+...|.+.|++++|..+|++.... .|+........ ..+.+.+
T Consensus 125 ~~~~~~-g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 125 MQLMQE-SNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQA 199 (287)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHH
T ss_pred HHHHhC-CCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhc
Confidence 333444 4555555555444332 1112334444444455555555555555444322 23322111111 1233344
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011102 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC-PTYDIYRDMIRIFMASGRLAKCRDVC 463 (493)
Q Consensus 385 ~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~ty~~li~~~~~~g~~~~A~~l~ 463 (493)
+.++|.+.+++..+.. .-+...+..+-..|...|++++|...|.+.....-. .+...+..+...|...|+.++|...+
T Consensus 200 ~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 200 ADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp TSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 4444444444443321 123344444555555555555555555555432211 11344555555555555555555544
Q ss_pred HH
Q 011102 464 KE 465 (493)
Q Consensus 464 ~~ 465 (493)
++
T Consensus 279 r~ 280 (287)
T 3qou_A 279 RR 280 (287)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 113
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.11 E-value=2.5e-05 Score=83.75 Aligned_cols=173 Identities=9% Similarity=-0.074 Sum_probs=137.5
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 011102 274 VKGGNLKLAWKLLMVAK--------DGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVG 345 (493)
Q Consensus 274 ~~~g~~~~A~~l~~~m~--------~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~ 345 (493)
...|++++|++.|++.. +. -..+...|..+-..+.+. |++++|.+.|++..+. -.-+...|..+-.+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDL-GDVAKATRKLDDLAER--VGWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhc-CCHHHHHHHHHHHhcc--CcchHHHHHHHHHHH
Confidence 78899999999999988 32 123456777888888999 9999999999998765 223677888899999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011102 346 IRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAI 425 (493)
Q Consensus 346 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~ 425 (493)
.+.|++++|.+.|++..+.. +-+...|..+-..|.+.|++++ ++.|++..+..- -+...|..+-.++.+.|++++|.
T Consensus 478 ~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999987652 2356888999999999999999 999999876532 25678899999999999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 011102 426 RYFSKLKEAGFCPT-YDIYRDMIRIFMASGR 455 (493)
Q Consensus 426 ~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~ 455 (493)
+.|++..+. .|+ ...|..+..++...|+
T Consensus 555 ~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 999987653 355 5667777777766554
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.10 E-value=5.5e-05 Score=65.85 Aligned_cols=159 Identities=13% Similarity=0.057 Sum_probs=116.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH-H
Q 011102 267 EATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKV-G 345 (493)
Q Consensus 267 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~-~ 345 (493)
..+...+.+.|++++|...|++..+.. +-+...+..+-..+.+. |++++|...++..... .|+...+..+... +
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~-g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLET-KQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHT-TCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHC-CCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 345567788899999999998766532 12456777888888888 9999999999987654 2344333322111 2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHH
Q 011102 346 IRLQKFGVVESLFHWFTHSGRDP-TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF-DLPAYRVVIKLFVALNDISR 423 (493)
Q Consensus 346 ~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~p-d~~ty~~li~~~~~~g~~~~ 423 (493)
.+.+...+|...|++..+. .| +...+..+-..+...|++++|.+.|+++.+..-.+ +...+..+...+...|+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 2333344578888887654 44 57888999999999999999999999988764332 35678889999999999999
Q ss_pred HHHHHHHHH
Q 011102 424 AIRYFSKLK 432 (493)
Q Consensus 424 A~~~~~~m~ 432 (493)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 115
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.10 E-value=0.0034 Score=66.70 Aligned_cols=168 Identities=10% Similarity=0.005 Sum_probs=100.8
Q ss_pred CCHHHHH-HHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCCC------------H
Q 011102 313 DKYMLVM-TLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSG---------RDPT------------V 370 (493)
Q Consensus 313 ~~~~~a~-~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------~~p~------------~ 370 (493)
|+.++|. ++|+..... +..+...|-..+...-+.|++++|.++|+.+.... -.|+ .
T Consensus 357 ~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 434 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT 434 (679)
T ss_dssp SCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence 3344554 555555432 33345556666667777788888888887776431 0132 2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011102 371 VMYTTLIHSRLSEKKCREALTVVWNMEAS-N-CLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448 (493)
Q Consensus 371 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~-g-i~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~ 448 (493)
..|...+....+.|..+.|.++|.+..+. + ..+......+.+.-.+ .++.+.|.++|+...+. +.-+...|...++
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHH
Confidence 35777777777777788888888877665 2 2233333333333222 34578888888877654 3335555667777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCcc--CHHHHHHHHHh
Q 011102 449 IFMASGRLAKCRDVCKEAEMAGFKL--DKQTVVELLQI 484 (493)
Q Consensus 449 ~~~~~g~~~~A~~l~~~m~~~g~~p--d~~t~~~Ll~~ 484 (493)
-....|+.+.|..+|+......-.+ ....|...++.
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~f 550 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFF 550 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 7777788888888888776543322 33456666665
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.02 E-value=0.00017 Score=68.25 Aligned_cols=162 Identities=11% Similarity=-0.023 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 011102 264 GVLEATAKGFVKGGNLKLAWKLLMVAKDGGRML-DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIM 342 (493)
Q Consensus 264 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li 342 (493)
..+..+...+.+.|++++|...|++..+.. | +...+..+-..+.+. |++++|...++..... .|+........
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~-g~~~~A~~~l~~~~~~---~p~~~~~~~~~ 191 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIAL-NRSEDAEAVLXTIPLQ---DQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHT-TCHHHHHHHHTTSCGG---GCSHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHC-CCHHHHHHHHHhCchh---hcchHHHHHHH
Confidence 345567777889999999999999988753 4 556778888889999 9999999999988654 35554333332
Q ss_pred -HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCC
Q 011102 343 -KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCL-FDLPAYRVVIKLFVALND 420 (493)
Q Consensus 343 -~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~-pd~~ty~~li~~~~~~g~ 420 (493)
..+.+.++.++|.+.|++..+.. +.+...+..+-..|...|++++|++.|.++.+..-. .+...+..+...|...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 34677788889999998877653 456888999999999999999999999998875322 236789999999999999
Q ss_pred HHHHHHHHHHHH
Q 011102 421 ISRAIRYFSKLK 432 (493)
Q Consensus 421 ~~~A~~~~~~m~ 432 (493)
.++|...|++-.
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 999998887654
No 117
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.01 E-value=0.00033 Score=55.79 Aligned_cols=96 Identities=6% Similarity=-0.047 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011102 299 SIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIH 378 (493)
Q Consensus 299 ~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~ 378 (493)
..|..+...+... |++++|.++++++... ...+...+..+...|.+.|++++|..+|+++.+.. +.+..++..+..
T Consensus 10 ~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 10 EAWYNLGNAYYKQ-GDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 3444445555555 5556666555555443 12244555555566666666666666666655432 234555666666
Q ss_pred HHHcCCCHHHHHHHHHHHHH
Q 011102 379 SRLSEKKCREALTVVWNMEA 398 (493)
Q Consensus 379 ~~~~~g~~~~A~~l~~~M~~ 398 (493)
.|...|++++|.+.|+++.+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 66666666666666666554
No 118
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.01 E-value=5.9e-05 Score=66.58 Aligned_cols=157 Identities=10% Similarity=-0.047 Sum_probs=109.5
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhc---CCCC-CCHHHHHHHHHHHHHcC
Q 011102 274 VKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQR---DDLN-LSQQDCTAIMKVGIRLQ 349 (493)
Q Consensus 274 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~---~g~~-p~~~~~~~li~~~~~~g 349 (493)
...|++++|.++++..... ......++..+-..+... |++++|...+++.... .+.. .....+..+-..|...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFM-DRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 4578999999965555432 123456777777788888 9999999999886551 1111 22456777888999999
Q ss_pred CHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHc
Q 011102 350 KFGVVESLFHWFTHS----GRDP--TVVMYTTLIHSRLSEKKCREALTVVWNMEAS----NCLF-DLPAYRVVIKLFVAL 418 (493)
Q Consensus 350 ~~~~A~~l~~~m~~~----g~~p--~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----gi~p-d~~ty~~li~~~~~~ 418 (493)
++++|.+.|++..+. +-.+ ....++.+-..+...|++++|.+.+++..+. +-.. -..++..+-..+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999999876542 2122 2456888889999999999999999986532 2111 123457777889999
Q ss_pred CCHHHHHHHHHHHH
Q 011102 419 NDISRAIRYFSKLK 432 (493)
Q Consensus 419 g~~~~A~~~~~~m~ 432 (493)
|++++|.+.+++..
T Consensus 161 g~~~~A~~~~~~al 174 (203)
T 3gw4_A 161 KNLLEAQQHWLRAR 174 (203)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999887765
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.99 E-value=0.001 Score=59.76 Aligned_cols=166 Identities=14% Similarity=0.029 Sum_probs=122.9
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCC---CHHHHHHHHHHHhhcCCCCCCHHH
Q 011102 261 ASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPD---KYMLVMTLLDELGQRDDLNLSQQD 337 (493)
Q Consensus 261 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~---~~~~a~~l~~~m~~~~g~~p~~~~ 337 (493)
.+...+..|-..|...+++++|.+.|++..+.| +...+..|=..|... | +.++|.+.|+...+. | +...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~~-g~~~~~~~A~~~~~~A~~~-g---~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIRN-PQQADYPQARQLAEKAVEA-G---SKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTSS-TTSCCHHHHHHHHHHHHHT-T---CHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHC-C---CHHH
Confidence 455566677777778899999999999988876 566666665555552 3 789999999988765 3 5667
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011102 338 CTAIMKVGIR----LQKFGVVESLFHWFTHSGRD-PTVVMYTTLIHSRLS----EKKCREALTVVWNMEASNCLFDLPAY 408 (493)
Q Consensus 338 ~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~-p~~~ty~~li~~~~~----~g~~~~A~~l~~~M~~~gi~pd~~ty 408 (493)
+..|-..|.. .+++++|.+.|++..+.|.. .+..++..|-..|.. .++.++|.+.|++..+.+ .+...+
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~ 165 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAE 165 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHH
Confidence 7777777776 78899999999988765432 126777888888887 788999999999987762 234456
Q ss_pred HHHHHHHHHc-C-----CHHHHHHHHHHHHHCCC
Q 011102 409 RVVIKLFVAL-N-----DISRAIRYFSKLKEAGF 436 (493)
Q Consensus 409 ~~li~~~~~~-g-----~~~~A~~~~~~m~~~g~ 436 (493)
..|-..|.+. | +.++|..+|+.-.+.|.
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 6666666553 3 89999999988887764
No 120
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.97 E-value=0.0003 Score=56.61 Aligned_cols=117 Identities=9% Similarity=0.004 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011102 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415 (493)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~ 415 (493)
..+..+...+...|++++|.+.|++..+.. +.+...|..+...+...|++++|.+.+++..+.. ..+...+..+-..|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 345555556666666666666666655432 2245556666666666666666666666655432 12345555556666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011102 416 VALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR 455 (493)
Q Consensus 416 ~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~ 455 (493)
.+.|++++|...|++..+..- .+...+..+...+.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 666666666666666554321 244555555555555554
No 121
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.95 E-value=0.00029 Score=57.11 Aligned_cols=117 Identities=9% Similarity=-0.005 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011102 334 SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413 (493)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~ 413 (493)
+...|..+...+.+.|++++|.+.|++..+.. +.+...|..+...|...|++++|.+.+++..+.. ..+...+..+-.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34456666666667777777777776665432 2255666666666666777777777766655532 124455666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 011102 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453 (493)
Q Consensus 414 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 453 (493)
.+.+.|++++|.+.|++..+..- -+...+..+...+.+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHh
Confidence 66666666666666666654321 1233444444444443
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.94 E-value=0.00035 Score=59.16 Aligned_cols=121 Identities=13% Similarity=-0.047 Sum_probs=57.5
Q ss_pred HHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 011102 306 LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK 385 (493)
Q Consensus 306 ~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 385 (493)
..+... |++++|...|+..... ...+...+..+...|.+.|++++|.+.|++..+.. +.+...|..+...+...|+
T Consensus 21 ~~~~~~-~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~ 96 (166)
T 1a17_A 21 NDYFKA-KDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 96 (166)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHc-cCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcc
Confidence 334444 4555555555444332 11234444555555555555555555555544331 2234455555555555666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHH
Q 011102 386 CREALTVVWNMEASNCLFDLPAY--RVVIKLFVALNDISRAIRYFSKL 431 (493)
Q Consensus 386 ~~~A~~l~~~M~~~gi~pd~~ty--~~li~~~~~~g~~~~A~~~~~~m 431 (493)
+++|.+.|++..+..- -+...+ -.....+.+.|++++|...+...
T Consensus 97 ~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 97 FRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666655544321 122222 22223345556666666665543
No 123
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.92 E-value=0.00034 Score=74.38 Aligned_cols=203 Identities=14% Similarity=0.015 Sum_probs=153.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcC---------CC
Q 011102 262 SKGVLEATAKGFVKGGNLKLAW-KLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD---------DL 331 (493)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~---------g~ 331 (493)
...+|-..+..+-+.|+.++|. ++|++.... ++.+...|-..+...-+. |+++.|.++|+.+.... +.
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~-~~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELN-TKIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 4456777777777889999997 999998863 344555666777778888 89999999999987530 11
Q ss_pred CCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011102 332 NLS------------QQDCTAIMKVGIRLQKFGVVESLFHWFTHS-G-RDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397 (493)
Q Consensus 332 ~p~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~ 397 (493)
|+ ..+|...+....+.|.++.|..+|....+. + ..+.+....+.|.-.+ .++.+.|.++|+...
T Consensus 420 -p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~L 497 (679)
T 4e6h_A 420 -PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGL 497 (679)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHH
T ss_pred -CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 32 346888888888999999999999998765 2 3344555555554322 356999999999977
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 398 ASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP--TYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 398 ~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
+. +.-+...+...++.....|+.+.|..+|+........+ ....|...++--.+.|+.+.+.++.+++.+.
T Consensus 498 k~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 498 KY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 65 33355566788888889999999999999988654321 4567999999889999999999999999875
No 124
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.86 E-value=0.00016 Score=77.55 Aligned_cols=157 Identities=6% Similarity=-0.100 Sum_probs=130.5
Q ss_pred hcCCCCHHHHHHHHHHHh--------hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011102 309 GKNPDKYMLVMTLLDELG--------QRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSR 380 (493)
Q Consensus 309 ~~~~~~~~~a~~l~~~m~--------~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~ 380 (493)
... |++++|++.+++.. +. -..+...+..+-..|.+.|++++|.+.|++..+.. .-+...|..+-..|
T Consensus 402 ~~~-~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVL-SQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTT-CCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred ccc-cCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHH
Confidence 556 89999999999987 32 23356778888899999999999999999987642 34678899999999
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 011102 381 LSEKKCREALTVVWNMEASNCLF-DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKC 459 (493)
Q Consensus 381 ~~~g~~~~A~~l~~~M~~~gi~p-d~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 459 (493)
...|++++|.+.|++..+.. | +...|..+-..|.+.|++++ .+.|++..+..- -+...|..+-.+|.+.|++++|
T Consensus 478 ~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999987653 4 45778888899999999999 999999886543 2677899999999999999999
Q ss_pred HHHHHHHHHCCCccCH
Q 011102 460 RDVCKEAEMAGFKLDK 475 (493)
Q Consensus 460 ~~l~~~m~~~g~~pd~ 475 (493)
.+.|++..+ +.|+.
T Consensus 554 ~~~~~~al~--l~P~~ 567 (681)
T 2pzi_A 554 VRTLDEVPP--TSRHF 567 (681)
T ss_dssp HHHHHTSCT--TSTTH
T ss_pred HHHHHhhcc--cCccc
Confidence 999998765 45654
No 125
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.84 E-value=0.00062 Score=66.06 Aligned_cols=132 Identities=8% Similarity=-0.046 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS-------------QQDCTAIMKVGIRLQKFGVVESLFHWFTH 363 (493)
Q Consensus 297 d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 363 (493)
+...|..+-..|.+. |++++|...|++......-.++ ...|..+-.+|.+.|++++|...|++..+
T Consensus 146 ~a~~~~~~g~~~~~~-g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKE-GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355677777777888 8888888888887664111110 35566666666666666666666666554
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHH
Q 011102 364 SGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRA-IRYFSKL 431 (493)
Q Consensus 364 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A-~~~~~~m 431 (493)
.. +.+...|..+-.+|...|++++|.+.|++..+..- -+...+..+-..+.+.|+.++| ..+|+.|
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 22455566666666666666666666665554321 1344555555555555555555 2344444
No 126
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.82 E-value=0.0002 Score=60.52 Aligned_cols=108 Identities=5% Similarity=-0.095 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 011102 313 DKYMLVMTLLDELGQRDDLNLS-QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALT 391 (493)
Q Consensus 313 ~~~~~a~~l~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 391 (493)
|++++|++.+...... .|+ ...+-.+-..|.+.|++++|.+.|++..+.. +-+..+|..+-..|.+.|++++|..
T Consensus 11 ~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 11 ADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 4455555555544322 111 1223344455555555555555555554331 2244555555555555555555555
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 011102 392 VVWNMEASNCLF-DLPAYRVVIKLFVALNDISRAIR 426 (493)
Q Consensus 392 l~~~M~~~gi~p-d~~ty~~li~~~~~~g~~~~A~~ 426 (493)
.|++..+. .| +...|..+-..|.+.|+.++|.+
T Consensus 87 ~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 87 CYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 55554442 22 23445555555555555544433
No 127
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=0.00084 Score=55.48 Aligned_cols=97 Identities=13% Similarity=-0.078 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011102 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD----LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444 (493)
Q Consensus 369 ~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd----~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~ 444 (493)
+...|..+...+...|++++|.+.|++..+. .|+ ...|..+-..|.+.|++++|...++...+..- .+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHH
Confidence 4555666666666666666666666665543 344 45566666666777777777777776664321 2456666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 445 DMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 445 ~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
.+..+|...|++++|.+.|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677777777777777777777665
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.81 E-value=0.00021 Score=61.84 Aligned_cols=116 Identities=7% Similarity=0.030 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCCH--HHH
Q 011102 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHS-RLSEKKC--REA 389 (493)
Q Consensus 313 ~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~-~~~~g~~--~~A 389 (493)
|++++|...++..... -..+...|..+-..|...|++++|...|++..+.. +.+...|..+... |...|++ ++|
T Consensus 24 ~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ---CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred cCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 4444454444444332 11233444444445555555555555554443321 1233344444444 3444444 455
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 390 LTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 390 ~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
...+++..+..- -+...+..+-..|...|++++|...|+...
T Consensus 101 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 101 RAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 544444443211 123334444444444444444444444444
No 129
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.001 Score=66.21 Aligned_cols=194 Identities=8% Similarity=-0.047 Sum_probs=99.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHH
Q 011102 273 FVKGGNLKLAWKLLMVAKDGGRMLD----------------PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQ 336 (493)
Q Consensus 273 ~~~~g~~~~A~~l~~~m~~~g~~pd----------------~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~ 336 (493)
+.+.|++++|++.|....+..-... ...+..+...|.+. |++++|.+.+.......+-.++..
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~-~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTM-GAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHccchH
Confidence 4556666666666666655321111 11245556666666 666766666665543211111111
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CC--CC
Q 011102 337 ----DCTAIMKVGIRLQKFGVVESLFHWFTH----SGRDPT-VVMYTTLIHSRLSEKKCREALTVVWNMEAS--NC--LF 403 (493)
Q Consensus 337 ----~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~--gi--~p 403 (493)
+.+.+-..+...|+.+.|.+++..... .+..+. ..++..|...|...|++++|..++++.... +. .+
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 112222222334566666666655432 222222 345566666666677777777666665432 11 11
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCC-C-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 404 D-LPAYRVVIKLFVALNDISRAIRYFSKLKE--AGFC-P-T--YDIYRDMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 404 d-~~ty~~li~~~~~~g~~~~A~~~~~~m~~--~g~~-p-~--~~ty~~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
. ..+|..+...|...|++++|..+++.... ..+. | . ...|..+...+...|++++|...|.+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1 23566666667777777777776665541 1111 1 1 2344555555566667777666655553
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.79 E-value=0.00076 Score=54.11 Aligned_cols=91 Identities=9% Similarity=-0.132 Sum_probs=40.7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 011102 304 LILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE 383 (493)
Q Consensus 304 li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 383 (493)
+...+... |++++|...|++.... ...+...+..+...|...|++++|.+.|++..+.. +.+...|..+...|.+.
T Consensus 18 ~~~~~~~~-~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 18 EGNEQMKV-ENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHc-cCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHh
Confidence 33334444 4444444444444332 11233444444444445555555555554444321 12344444555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 011102 384 KKCREALTVVWNMEA 398 (493)
Q Consensus 384 g~~~~A~~l~~~M~~ 398 (493)
|++++|.+.|++..+
T Consensus 94 ~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 94 NKHVEAVAYYKKALE 108 (131)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 555555555555443
No 131
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.75 E-value=0.00072 Score=63.44 Aligned_cols=196 Identities=7% Similarity=-0.094 Sum_probs=134.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH-------HHHhcCCCCHHHHHHHHHHHhhcCCCCCC------------
Q 011102 275 KGGNLKLAWKLLMVAKDGGRMLD-PSIYAKLI-------LELGKNPDKYMLVMTLLDELGQRDDLNLS------------ 334 (493)
Q Consensus 275 ~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li-------~~~~~~~~~~~~a~~l~~~m~~~~g~~p~------------ 334 (493)
..++.+.|.+.|.+..+.. |+ ...|..++ ..+... ++..+++..+..-. ++.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~-~r~~~a~~~~~~~l---~l~p~~l~a~~~~~g~y 91 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRA-WYSRRNFGQLSGSV---QISMSTLNARIAIGGLY 91 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHH-HHTGGGTTHHHHTT---TCCGGGGCCEEECCTTT
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHH-HHHHHHHHHHHHHh---cCChhhhhhhhccCCcc
Confidence 6899999999999998853 43 45666553 222222 22233333222221 22221
Q ss_pred ----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 011102 335 ----------QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404 (493)
Q Consensus 335 ----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd 404 (493)
...+-.....+...|++++|.++|+.+... .|+......+-..+.+.+++++|+..|+...+. |+
T Consensus 92 ~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d 166 (282)
T 4f3v_A 92 GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PD 166 (282)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SC
T ss_pred cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CC
Confidence 223345667888999999999999988754 354446666667899999999999999855432 32
Q ss_pred H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHH
Q 011102 405 L----PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT--YDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTV 478 (493)
Q Consensus 405 ~----~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 478 (493)
. ..+..+=.++.+.|++++|+..|++.......|. .......-.++.+.|+.++|..+|+++... .|+...+
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~ 244 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVA 244 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHH
Confidence 2 3566667789999999999999999885444354 335566777788999999999999999874 5665555
Q ss_pred HHHHH
Q 011102 479 VELLQ 483 (493)
Q Consensus 479 ~~Ll~ 483 (493)
..|..
T Consensus 245 ~aL~~ 249 (282)
T 4f3v_A 245 AALKD 249 (282)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 55543
No 132
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.72 E-value=0.0012 Score=52.98 Aligned_cols=95 Identities=9% Similarity=0.059 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 011102 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGF--CPT----YDIYRDM 446 (493)
Q Consensus 373 y~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~ty~~l 446 (493)
|..+...+...|++++|...|++..+.. ..+...+..+-..|...|++++|...|++..+..- .++ ..+|..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3334444444444444444444433321 12333444444444445555555554444432110 111 3444555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 011102 447 IRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 447 i~~~~~~g~~~~A~~l~~~m~~ 468 (493)
...|.+.|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 5555555555555555555544
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.72 E-value=0.0012 Score=53.91 Aligned_cols=94 Identities=10% Similarity=-0.019 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011102 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMA 452 (493)
Q Consensus 373 y~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~ 452 (493)
|.-.-..|.+.|++++|++.|++..+.. .-+...|..+-.+|.+.|++++|...|+...+..- .+...|..+-.+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHH
Confidence 3334444444555555555554443321 12334444444555555555555555555443221 134445555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 011102 453 SGRLAKCRDVCKEAEM 468 (493)
Q Consensus 453 ~g~~~~A~~l~~~m~~ 468 (493)
.|++++|.+.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555544
No 134
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.71 E-value=0.00033 Score=58.59 Aligned_cols=132 Identities=10% Similarity=-0.048 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHH
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGR-DPT----VVMYTTLIHSRLSEKKCREALTVVWNMEAS----NCLF-DLP 406 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----gi~p-d~~ 406 (493)
++..+-..|...|++++|.+.|++..+..- .++ ..++..+-..|...|++++|.+.+++..+. +-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455666677777777777777776543210 111 246777777888888888888888776542 1111 134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 407 AYRVVIKLFVALNDISRAIRYFSKLKE----AGFCP-TYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 407 ty~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
.+..+-..+...|++++|...+++..+ .+..+ ...++..+...|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566677778888888888888887652 22111 135677788888899999999999888654
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.0014 Score=53.03 Aligned_cols=95 Identities=14% Similarity=0.002 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011102 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFM 451 (493)
Q Consensus 372 ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~ 451 (493)
.|..+-..+.+.|++++|.+.|++..+.. ..+...|..+-.+|.+.|++++|...|++..+..- -+...|..+-.+|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 34445555556666666666666554432 12345566666666666666666666666554331 24555666666666
Q ss_pred HcCCHHHHHHHHHHHHH
Q 011102 452 ASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 452 ~~g~~~~A~~l~~~m~~ 468 (493)
..|++++|.+.|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 66666666666666654
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.69 E-value=0.00094 Score=53.94 Aligned_cols=94 Identities=12% Similarity=0.036 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKV 344 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~ 344 (493)
.|..+...+.+.|++++|.+.|++..+.. ..+...+..+-..+... |++++|...+++..+. ...+...+..+...
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 93 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKL-LEFQLALKDCEECIQL--EPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTT-TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 44445555555555555555555544432 11334444444444444 5555555555544432 11233344444444
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 011102 345 GIRLQKFGVVESLFHWFT 362 (493)
Q Consensus 345 ~~~~g~~~~A~~l~~~m~ 362 (493)
|.+.|++++|.+.|++..
T Consensus 94 ~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 444444444444444443
No 137
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.69 E-value=0.00084 Score=53.91 Aligned_cols=110 Identities=9% Similarity=0.051 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 011102 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC--LFD----LPAYR 409 (493)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi--~pd----~~ty~ 409 (493)
..|..+...+...|++++|...|++..+.. +.+...|..+...|...|++++|...+++..+... .++ ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666777777777777777765442 33566677777777777777777777777654321 122 55666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011102 410 VVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448 (493)
Q Consensus 410 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~ 448 (493)
.+-..|.+.|++++|.+.|+...+.. |+...+..+-.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 77777778888888888887777543 45544444433
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.68 E-value=0.0004 Score=60.05 Aligned_cols=118 Identities=6% Similarity=-0.054 Sum_probs=52.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCH--HHH
Q 011102 348 LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL-FVALNDI--SRA 424 (493)
Q Consensus 348 ~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~-~~~~g~~--~~A 424 (493)
.|++++|...|++..+.. +.+...|..+-..|...|++++|...|++..+..- .+...+..+-.. +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHHH
Confidence 344455555554443321 22344455555555555555555555555443211 123334444444 4445554 555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 425 ~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
...|+...+..- -+...|..+...|...|++++|.+.|++..+
T Consensus 101 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555555443321 1334444455555555555555555555444
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.68 E-value=0.00099 Score=64.60 Aligned_cols=131 Identities=9% Similarity=-0.029 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 011102 263 KGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLD--------------PSIYAKLILELGKNPDKYMLVMTLLDELGQR 328 (493)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--------------~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~ 328 (493)
...|..+-..|.+.|++++|...|++..+..-... ...|..+-..|.+. |++++|+..+++..+.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL-QAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence 34677788888999999999999999887542211 47888888899999 9999999999998875
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Q 011102 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREA-LTVVWNME 397 (493)
Q Consensus 329 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A-~~l~~~M~ 397 (493)
-.-+...|..+-.+|.+.|++++|...|++..+.. +-+...+..+...+.+.|+.++| ..++..|.
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23467889999999999999999999999987652 33677889999999999999988 45666664
No 140
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.0013 Score=65.57 Aligned_cols=213 Identities=9% Similarity=-0.002 Sum_probs=138.3
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcCCHHHHH
Q 011102 204 RELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAW 283 (493)
Q Consensus 204 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 283 (493)
..+.+.|++++|++.|....+...-..+... ..+.. ..... .....+..|...|.+.|++++|.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~---------~~~~~--~~~~~-----~~~~al~~l~~~y~~~~~~~~a~ 75 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAA---------GASVD--DKRRN-----EQETSILELGQLYVTMGAKDKLR 75 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSS---------SSSBC--SHHHH-----HHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHH---------HHHHH--HHHhh-----hHHHHHHHHHHHHHHCCCHHHHH
Confidence 3567789999999999998875222111100 00000 00000 01124567888999999999999
Q ss_pred HHHHHHHhC-CCCCCH---HHHHHHHHHHhcCCCCHHHHHHHHHHHhhc---CCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 011102 284 KLLMVAKDG-GRMLDP---SIYAKLILELGKNPDKYMLVMTLLDELGQR---DDLNLS-QQDCTAIMKVGIRLQKFGVVE 355 (493)
Q Consensus 284 ~l~~~m~~~-g~~pd~---~t~~~li~~~~~~~~~~~~a~~l~~~m~~~---~g~~p~-~~~~~~li~~~~~~g~~~~A~ 355 (493)
+.+..+... +-.++. ......+..+....|..++|..++...... .+..+. ..++..+...|...|++++|.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 155 (434)
T 4b4t_Q 76 EFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSL 155 (434)
T ss_dssp HHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHH
Confidence 999877542 111222 233455666666668899999888875431 122232 457788889999999999999
Q ss_pred HHHHHHHHc--CC--CC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCCHHHH
Q 011102 356 SLFHWFTHS--GR--DP-TVVMYTTLIHSRLSEKKCREALTVVWNMEAS----NCLFD--LPAYRVVIKLFVALNDISRA 424 (493)
Q Consensus 356 ~l~~~m~~~--g~--~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----gi~pd--~~ty~~li~~~~~~g~~~~A 424 (493)
.++++.... +. .+ .+..|..++..|...|++++|..++++.... +..+. ...|..+...+...|++++|
T Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A 235 (434)
T 4b4t_Q 156 ALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTA 235 (434)
T ss_dssp HHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHH
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999887542 11 12 2467889999999999999999999886542 22111 24566666777888999999
Q ss_pred HHHHHHHH
Q 011102 425 IRYFSKLK 432 (493)
Q Consensus 425 ~~~~~~m~ 432 (493)
...|.+..
T Consensus 236 ~~~~~~a~ 243 (434)
T 4b4t_Q 236 FSYFFESF 243 (434)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877664
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.65 E-value=0.0022 Score=60.06 Aligned_cols=130 Identities=15% Similarity=0.051 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC--HHHHHHHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS--QQDCTAIM 342 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~--~~~~~~li 342 (493)
.+-.+...+...|++++|.++|+.+...+ |+....-.+-..+.+. ++|++|+..|+..... . .|. ...+..+-
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~-~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG 178 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAA-ERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHG 178 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHT-TCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHc-CCHHHHHHHHHHhhcc-C-CcccHHHHHHHHH
Confidence 34556677888899999999998877654 5544433444466777 8888888888755432 0 111 23566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 011102 343 KVGIRLQKFGVVESLFHWFTHSGRDPT--VVMYTTLIHSRLSEKKCREALTVVWNMEAS 399 (493)
Q Consensus 343 ~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~M~~~ 399 (493)
.++.+.|++++|++.|++.......|. .......-.++.+.|+.++|..+|+++...
T Consensus 179 ~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 179 VAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 778888888888888887764332253 235566666777788888888888887764
No 142
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.64 E-value=0.0026 Score=49.81 Aligned_cols=96 Identities=11% Similarity=-0.035 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011102 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIF 450 (493)
Q Consensus 371 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~ 450 (493)
..|..+...+...|++++|.+.|++..+.. ..+...+..+-..+.+.|++++|...+++..+..- .+...|..+...|
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 344555555555566666666655554431 12344555555556666666666666666554321 2455566666666
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 011102 451 MASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 451 ~~~g~~~~A~~l~~~m~~ 468 (493)
...|++++|.+.+++..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 666666666666666654
No 143
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.64 E-value=0.0024 Score=52.08 Aligned_cols=96 Identities=9% Similarity=0.032 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~ 416 (493)
.+...-..|.+.|++++|.+.|++..+.. +.+...|..+-.+|.+.|++++|++.|++..+..- .+...|..+-.+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHH
Confidence 44555566777777777777777665432 33566677777777777777777777777655321 23556777777777
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 011102 417 ALNDISRAIRYFSKLKEA 434 (493)
Q Consensus 417 ~~g~~~~A~~~~~~m~~~ 434 (493)
..|++++|.+.|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 777777777777776653
No 144
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.62 E-value=0.0029 Score=59.49 Aligned_cols=191 Identities=8% Similarity=-0.043 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 011102 263 KGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRML-DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAI 341 (493)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~l 341 (493)
...+..+-..+.+.|++++|...|++..+.. | +...|..+-..|.+. |++++|...+++..+. -.-+...+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~--~p~~~~~~~~l 78 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKM-QQPEQALADCRRALEL--DGQSVKAHFFL 78 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3456677888899999999999999988753 4 677888888889999 9999999999998765 23457788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011102 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTV-VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALND 420 (493)
Q Consensus 342 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~ 420 (493)
-.+|.+.|++++|...|++..+.. |+. ..+...+....+ ..++ .-+..........+..... .+..+ ..|+
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~i~~-~l~~l-~~~~ 150 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKK-KRWNSIEERRIHQESELHS-YLTRL-IAAE 150 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHH-HHHHHHHHTCCCCCCHHHH-HHHHH-HHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHH-HHHHHHHHHHHhhhHHHHH-HHHHH-HHHH
Confidence 999999999999999998876431 110 011111111111 1111 1122233333434443333 33333 3688
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHc-CCHHHHHHHHHHHHH
Q 011102 421 ISRAIRYFSKLKEAGFCPTYDIY-RDMIRIFMAS-GRLAKCRDVCKEAEM 468 (493)
Q Consensus 421 ~~~A~~~~~~m~~~g~~p~~~ty-~~li~~~~~~-g~~~~A~~l~~~m~~ 468 (493)
.++|.+.++...+. .|+.... ..+-..+.+. +.+++|.++|.+..+
T Consensus 151 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 151 RERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 89998888876643 4554433 3343334444 678899999988764
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.61 E-value=0.0028 Score=49.59 Aligned_cols=97 Identities=8% Similarity=-0.045 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011102 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415 (493)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~ 415 (493)
..+..+...+...|++++|.+.|++..... +.+...|..+...|...|++++|...+++..+... .+...+..+-..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 445556666667777777777777665432 23556666667777777777777777776655421 2455666666777
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 011102 416 VALNDISRAIRYFSKLKEA 434 (493)
Q Consensus 416 ~~~g~~~~A~~~~~~m~~~ 434 (493)
.+.|++++|.+.|+...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 7777777777777776643
No 146
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.61 E-value=0.0034 Score=51.17 Aligned_cols=97 Identities=12% Similarity=0.016 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011102 334 SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413 (493)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~ 413 (493)
+...|..+-..+.+.|++++|...|+...+.. +.+...|..+...|...|++++|...+++..+..- -+...+..+-.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 34445555555555555555555555544332 22344555555555555555555555555444321 13344455555
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 011102 414 LFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 414 ~~~~~g~~~~A~~~~~~m~ 432 (493)
.|...|++++|...|+...
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5555555555555555444
No 147
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.60 E-value=0.025 Score=53.80 Aligned_cols=186 Identities=8% Similarity=-0.023 Sum_probs=136.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHH---HH----HHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC
Q 011102 278 NLKLAWKLLMVAKDGGRMLDPSIYAK---LI----LELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQK 350 (493)
Q Consensus 278 ~~~~A~~l~~~m~~~g~~pd~~t~~~---li----~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 350 (493)
+++++++.++.+....- -+..+|+. ++ ...... +++++++++++.+.+. -.-+-..|+---..+.+.|.
T Consensus 84 ~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~-~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~ 159 (306)
T 3dra_A 84 NLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNND-FDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDL 159 (306)
T ss_dssp CHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTC-CCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcc
Confidence 78889998888887542 23334543 22 222222 6788999999998875 34577788877778888888
Q ss_pred HH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 011102 351 FG--VVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK------CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422 (493)
Q Consensus 351 ~~--~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~------~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~ 422 (493)
++ ++++.++++.+.. .-|-..|+---..+.+.++ ++++++.++++..... -|...|+-+-..+.+.|+..
T Consensus 160 ~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~ 237 (306)
T 3dra_A 160 HNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSI 237 (306)
T ss_dssp TTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCG
T ss_pred cChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCCh
Confidence 88 9999999998654 4577788877777777776 8899999998877543 47788888888888888744
Q ss_pred H-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 423 R-AIRYFSKLKEAG--FCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 423 ~-A~~~~~~m~~~g--~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
. +..+.+++.+.+ -..+...+..+.+.|.+.|+.++|.++++.+.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 238 TQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp GGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 4 555666665432 1347788999999999999999999999998753
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.60 E-value=0.0017 Score=57.27 Aligned_cols=131 Identities=8% Similarity=-0.144 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC--------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGR-DPT--------------VVMYTTLIHSRLSEKKCREALTVVWNMEASNC 401 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~--------------~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi 401 (493)
.+..+-..+.+.|++++|.+.|++..+..- .|+ ...|..+-.+|.+.|++++|+..+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 445555666677777777777776654311 110 2677777888888888888888888876642
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHC
Q 011102 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR-DVCKEAEMA 469 (493)
Q Consensus 402 ~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~-~l~~~m~~~ 469 (493)
..+...|..+-.+|...|++++|...|++..+..- -+...+..+...+...++.+++. ..+..|...
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC------------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23566777777888888888888888888775432 25666777777777777776666 455555443
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.57 E-value=0.0017 Score=53.01 Aligned_cols=108 Identities=10% Similarity=0.042 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHH
Q 011102 373 YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG--FCPT----YDIYRDM 446 (493)
Q Consensus 373 y~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~ty~~l 446 (493)
+.-|-..+.+.|++++|++.|++..+.. +-+...|+.+-.+|.+.|++++|.+.|+...+.. ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344444555555555555555444321 1123444555555555555555555555443211 1111 1245555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 011102 447 IRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483 (493)
Q Consensus 447 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~ 483 (493)
-.++...|++++|.+.|++..+ ..||..+...|-.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l~~ 124 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKVKE 124 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHHHH
Confidence 5566666777777777766554 3455555444433
No 150
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.56 E-value=0.0012 Score=56.08 Aligned_cols=95 Identities=12% Similarity=-0.057 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~ 416 (493)
.+..+-..+.+.|++++|...|++..+.. +-+...|..+-.+|...|++++|.+.|++..+..- -+...|..+-.+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHH
Confidence 44445555666666666666666655431 22455566666666666666666666666554321 12345555555666
Q ss_pred HcCCHHHHHHHHHHHHH
Q 011102 417 ALNDISRAIRYFSKLKE 433 (493)
Q Consensus 417 ~~g~~~~A~~~~~~m~~ 433 (493)
+.|++++|...|+...+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666554
No 151
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.56 E-value=0.0025 Score=51.99 Aligned_cols=100 Identities=9% Similarity=-0.051 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011102 367 DPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDM 446 (493)
Q Consensus 367 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~l 446 (493)
..+...|..+-..+...|++++|...|++..+..- .+...|..+-..+...|++++|...|+...+..- -+...|..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 45678899999999999999999999999776532 3577889999999999999999999999886542 367889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 011102 447 IRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 447 i~~~~~~g~~~~A~~l~~~m~~ 468 (493)
-.+|...|++++|.+.|++..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999998875
No 152
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.55 E-value=0.0003 Score=59.48 Aligned_cols=139 Identities=4% Similarity=-0.146 Sum_probs=85.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCH
Q 011102 273 FVKGGNLKLAWKLLMVAKDGGRMLD-PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKF 351 (493)
Q Consensus 273 ~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~ 351 (493)
+...|++++|++.++..... .|+ ...+-.+-..|.+. |++++|.+.|++..+. -.-+...|..+-..|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~-~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEA-KEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 34556777777777765442 122 22334455567777 7888888888777654 123566777777778888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 011102 352 GVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV-VWNMEASNCLFD-LPAYRVVIKLFVALN 419 (493)
Q Consensus 352 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l-~~~M~~~gi~pd-~~ty~~li~~~~~~g 419 (493)
++|...|++..+.. +-+...|..+-..|.+.|+.++|.+. +++..+. .|+ ...|...-..+...|
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 88888887766542 22466777777778888877665554 4554442 343 344554444444444
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.49 E-value=0.0035 Score=53.25 Aligned_cols=97 Identities=7% Similarity=-0.051 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011102 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKL 414 (493)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~ 414 (493)
...+..+-..|.+.|++++|.+.|++..+.. +-+...|..+-..|.+.|++++|++.|++..+..- -+...|..+-..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 4456666667777777777777777765442 23566677777777777777777777777665431 235667777777
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 011102 415 FVALNDISRAIRYFSKLKE 433 (493)
Q Consensus 415 ~~~~g~~~~A~~~~~~m~~ 433 (493)
|.+.|++++|...|++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 7777777777777777663
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=0.0045 Score=50.90 Aligned_cols=98 Identities=12% Similarity=0.009 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011102 334 SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT----VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409 (493)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~ 409 (493)
+...+..+...+.+.|++++|.+.|++..+. .|+ ...|..+...|...|++++|.+.+++..+.. ..+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4556666667777777777777777776643 454 5667777777777777777777777765542 12456666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 410 VVIKLFVALNDISRAIRYFSKLKEA 434 (493)
Q Consensus 410 ~li~~~~~~g~~~~A~~~~~~m~~~ 434 (493)
.+-..|...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7777777778888888777777643
No 155
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.48 E-value=0.0012 Score=51.44 Aligned_cols=98 Identities=8% Similarity=-0.020 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 011102 371 VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFC-PTYDIYRDMIRI 449 (493)
Q Consensus 371 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~ty~~li~~ 449 (493)
..|..+...+.+.|++++|...|++..+..- .+...|..+-..+...|++++|...|++..+..-. .+...|..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444555556666666666666666554321 23455556666666666666666666666543210 135566666666
Q ss_pred HHHc-CCHHHHHHHHHHHHHC
Q 011102 450 FMAS-GRLAKCRDVCKEAEMA 469 (493)
Q Consensus 450 ~~~~-g~~~~A~~l~~~m~~~ 469 (493)
|.+. |++++|.+.+++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 6666 6777776666666543
No 156
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.47 E-value=0.0019 Score=54.33 Aligned_cols=95 Identities=5% Similarity=-0.061 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011102 336 QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLF 415 (493)
Q Consensus 336 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~ 415 (493)
..+..+-..+.+.|++++|...|+...... +.+...|..+-.+|...|++++|.+.|++..+..- -+...|..+-.+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 345555666777777777777777765432 23566666677777777777777777777655321 2345566666667
Q ss_pred HHcCCHHHHHHHHHHHH
Q 011102 416 VALNDISRAIRYFSKLK 432 (493)
Q Consensus 416 ~~~g~~~~A~~~~~~m~ 432 (493)
...|++++|...|+...
T Consensus 100 ~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 77777777777776665
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.47 E-value=0.002 Score=56.75 Aligned_cols=123 Identities=10% Similarity=-0.081 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC--------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 011102 264 GVLEATAKGFVKGGNLKLAWKLLMVAKDGGRM-LD--------------PSIYAKLILELGKNPDKYMLVMTLLDELGQR 328 (493)
Q Consensus 264 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd--------------~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~ 328 (493)
..+..+-..+.+.|++++|.+.|++..+..-. |+ ...|..+-..|.+. |++++|+..++.....
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN-KDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHh
Confidence 35677777888889999999999888764211 10 13444444445555 5555555555554443
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 011102 329 DDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREAL 390 (493)
Q Consensus 329 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 390 (493)
-..+...+..+-.+|...|++++|.+.|++..+.. +-+...+..+...+...++.+++.
T Consensus 118 --~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 --DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp --STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred --CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 11234444455555555555555555555543321 123334444444444444443333
No 158
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.47 E-value=0.0018 Score=54.88 Aligned_cols=92 Identities=8% Similarity=-0.096 Sum_probs=44.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 011102 303 KLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLS 382 (493)
Q Consensus 303 ~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~ 382 (493)
.+-..+.+. |++++|...|+..... -.-+...|..+-.+|.+.|++++|.+.|++..+.. +-+...|..+-.+|.+
T Consensus 41 ~lg~~~~~~-g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 41 SYAYDFYNK-GRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 333444444 5555555555554443 11234445555555555555555555555544321 1133444555555555
Q ss_pred CCCHHHHHHHHHHHHH
Q 011102 383 EKKCREALTVVWNMEA 398 (493)
Q Consensus 383 ~g~~~~A~~l~~~M~~ 398 (493)
.|++++|.+.|++..+
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555444
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.46 E-value=0.0022 Score=54.60 Aligned_cols=99 Identities=5% Similarity=-0.092 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011102 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIR 448 (493)
Q Consensus 369 ~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~ 448 (493)
+...|..+-..|.+.|++++|++.|++..+..- -+...|..+-..|.+.|++++|...|++..+..- -+...|..+-.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 456788888999999999999999999876532 2678889999999999999999999999986542 36888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 011102 449 IFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 449 ~~~~~g~~~~A~~l~~~m~~~ 469 (493)
+|.+.|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 160
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.45 E-value=0.036 Score=52.69 Aligned_cols=165 Identities=5% Similarity=-0.060 Sum_probs=106.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC----
Q 011102 277 GNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYM--LVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQK---- 350 (493)
Q Consensus 277 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~--~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~---- 350 (493)
+++++++++++.+.+.. .-+-.+|+.---.+.+. +.++ ++++.++.+.+. . .-|-..|+---..+.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l-~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTF-DLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh-cccChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccchh
Confidence 56778888888777643 23556666555555555 6666 788888887765 2 2456666655555555555
Q ss_pred --HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHH
Q 011102 351 --FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE-ALTVVWNMEASN--CLFDLPAYRVVIKLFVALNDISRAI 425 (493)
Q Consensus 351 --~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~-A~~l~~~M~~~g--i~pd~~ty~~li~~~~~~g~~~~A~ 425 (493)
++++++.+++..... .-|...|+-+-..+.+.|+..+ +.++..+..+.+ -..+...+..+...|.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 778888887776543 4577778877777777776443 445665554432 1346677888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHH
Q 011102 426 RYFSKLKEAGFCPTYDIYRDM 446 (493)
Q Consensus 426 ~~~~~m~~~g~~p~~~ty~~l 446 (493)
++++.+.+.-=+....-|+..
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhccChHHHHHHHHH
Confidence 888888753212234444433
No 161
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.44 E-value=0.00079 Score=56.17 Aligned_cols=60 Identities=10% Similarity=-0.114 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH----HHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRM-LDP----SIYAKLILELGKNPDKYMLVMTLLDEL 325 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~----~t~~~li~~~~~~~~~~~~a~~l~~~m 325 (493)
++..+-..|...|++++|.+.+++..+..-. .+. .++..+-..+... |++++|...+++.
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a 75 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL-GEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 4666667777777777777777766542100 111 2344444445555 5555555555554
No 162
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.43 E-value=0.0024 Score=52.99 Aligned_cols=95 Identities=13% Similarity=-0.015 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFV 416 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~ 416 (493)
.+..+-..+.+.|++++|...|++..... +.+...|..+-..|.+.|++++|...|++..+..- -+...|..+-.+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHH
Confidence 34445566677777777777777766542 23566677777777777777777777777665431 23455666666777
Q ss_pred HcCCHHHHHHHHHHHHH
Q 011102 417 ALNDISRAIRYFSKLKE 433 (493)
Q Consensus 417 ~~g~~~~A~~~~~~m~~ 433 (493)
..|++++|...|+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776653
No 163
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.41 E-value=0.0021 Score=49.88 Aligned_cols=89 Identities=7% Similarity=-0.064 Sum_probs=34.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHc-CC
Q 011102 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCL-FDLPAYRVVIKLFVAL-ND 420 (493)
Q Consensus 343 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~-pd~~ty~~li~~~~~~-g~ 420 (493)
..+.+.|++++|...|++..+.. ..+...|..+-..+...|++++|.+.|++..+..-. .+...+..+-..+.+. |+
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~ 92 (112)
T 2kck_A 14 VLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGK 92 (112)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSC
T ss_pred HHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCC
Confidence 33334444444444444433221 122333444444444444444444444443332100 0233344444444444 44
Q ss_pred HHHHHHHHHHHH
Q 011102 421 ISRAIRYFSKLK 432 (493)
Q Consensus 421 ~~~A~~~~~~m~ 432 (493)
+++|.+.|+...
T Consensus 93 ~~~A~~~~~~~~ 104 (112)
T 2kck_A 93 EVEAEIAEARAK 104 (112)
T ss_dssp SHHHHHHHHHHG
T ss_pred HHHHHHHHHHHh
Confidence 444444444443
No 164
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.39 E-value=0.0049 Score=51.71 Aligned_cols=90 Identities=7% Similarity=-0.032 Sum_probs=40.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 011102 304 LILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE 383 (493)
Q Consensus 304 li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 383 (493)
+-..+.+. |++++|...|+..... -..+...|..+-.+|.+.|++++|...|++..+.. +-+...|..+-.+|...
T Consensus 27 ~g~~~~~~-g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 27 LAFNQYQS-GXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHc-CChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 33344444 4555555555544432 11234444444444555555555555555443321 12334444444455555
Q ss_pred CCHHHHHHHHHHHH
Q 011102 384 KKCREALTVVWNME 397 (493)
Q Consensus 384 g~~~~A~~l~~~M~ 397 (493)
|++++|.+.|+...
T Consensus 103 g~~~~A~~~~~~al 116 (148)
T 2vgx_A 103 GELAEAESGLFLAQ 116 (148)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555554443
No 165
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.007 Score=48.64 Aligned_cols=88 Identities=9% Similarity=-0.005 Sum_probs=35.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 011102 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422 (493)
Q Consensus 343 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~ 422 (493)
..+.+.|++++|...|++..+.. +.+...|..+-.+|.+.|++++|++.+++..+..- -+...|..+-.++...|+++
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~ 89 (126)
T 3upv_A 12 KEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYA 89 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhCHH
Confidence 33444444444444444433221 12334444444444444444444444444333211 12333444444444444444
Q ss_pred HHHHHHHHHH
Q 011102 423 RAIRYFSKLK 432 (493)
Q Consensus 423 ~A~~~~~~m~ 432 (493)
+|...|++..
T Consensus 90 ~A~~~~~~al 99 (126)
T 3upv_A 90 SALETLDAAR 99 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.34 E-value=0.0056 Score=49.78 Aligned_cols=105 Identities=13% Similarity=0.140 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN--CLFD----LPAYRV 410 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g--i~pd----~~ty~~ 410 (493)
.+.-+-..|.+.|++++|++.|++..+.. +-+...|+.+-.+|.+.|++++|++.+++..+.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556667777788888888887766542 2356777777788888888888888877765421 1112 134555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011102 411 VIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYR 444 (493)
Q Consensus 411 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~ 444 (493)
+=..+...|++++|.+.|++-.+. .||..+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 666677888888888888776642 35554433
No 167
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.34 E-value=0.0037 Score=51.79 Aligned_cols=87 Identities=6% Similarity=-0.079 Sum_probs=37.9
Q ss_pred HHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 011102 307 ELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386 (493)
Q Consensus 307 ~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 386 (493)
.+.+. |++++|...|+..... -..+...|..+-.+|.+.|++++|...|+...+.. +-+...|..+-.+|...|++
T Consensus 27 ~~~~~-g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 27 NQYQA-GKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHH-ccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 34444 4445555444444332 11233344444444444455555555444443321 12233344444444444555
Q ss_pred HHHHHHHHHHH
Q 011102 387 REALTVVWNME 397 (493)
Q Consensus 387 ~~A~~l~~~M~ 397 (493)
++|.+.|+...
T Consensus 103 ~~A~~~~~~al 113 (142)
T 2xcb_A 103 DGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55554444433
No 168
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.27 E-value=0.095 Score=53.43 Aligned_cols=142 Identities=6% Similarity=0.005 Sum_probs=75.5
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH------------------------
Q 011102 317 LVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVM------------------------ 372 (493)
Q Consensus 317 ~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t------------------------ 372 (493)
.+..+|+++... ...+...|-..+.-+.+.|+++.|..+|+..... +.+...
T Consensus 197 Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~ 272 (493)
T 2uy1_A 197 RMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLVMDEEAVYGDLKRKYSMG 272 (493)
T ss_dssp HHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHTTCTHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhhcchhHHHHHHHHHHHhh
Confidence 345566665543 3344566666667777788888888888876655 222211
Q ss_pred ----------------HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 373 ----------------YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR--VVIKLFVALNDISRAIRYFSKLKEA 434 (493)
Q Consensus 373 ----------------y~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~--~li~~~~~~g~~~~A~~~~~~m~~~ 434 (493)
|-..+..+.+.+..+.|.++|+.....+ .+...|. +.+...+ .++.+.|..+|+...+.
T Consensus 273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLK 349 (493)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHH
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHH
Confidence 2222222233455666777777662111 1222332 2222222 23577777777766643
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 435 GFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466 (493)
Q Consensus 435 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 466 (493)
- .-+...|...++-..+.|+.+.|..+|+..
T Consensus 350 ~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 350 H-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 112334455566566667777777666664
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.14 E-value=0.0099 Score=47.68 Aligned_cols=59 Identities=12% Similarity=0.044 Sum_probs=27.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 408 YRVVIKLFVALNDISRAIRYFSKLKEAGFCPT----YDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 408 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
+..+-..+.+.|++++|...|+...+.. |+ ...+..+..+|.+.|++++|.+.|++..+
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444555555555554444322 11 33344444455555555555555555543
No 170
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.13 E-value=0.0009 Score=53.56 Aligned_cols=83 Identities=12% Similarity=-0.020 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011102 349 QKFGVVESLFHWFTHSG--RDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIR 426 (493)
Q Consensus 349 g~~~~A~~l~~~m~~~g--~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~ 426 (493)
|++++|+..|++..+.+ -+-+...|..+-..|.+.|++++|.+.|++..+..- -+...+..+-.++.+.|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHHH
Confidence 44444555554444322 111233444444445555555555555554443311 123344444444455555555555
Q ss_pred HHHHHH
Q 011102 427 YFSKLK 432 (493)
Q Consensus 427 ~~~~m~ 432 (493)
.|++..
T Consensus 83 ~~~~al 88 (117)
T 3k9i_A 83 LLLKII 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.12 E-value=0.0063 Score=61.62 Aligned_cols=124 Identities=7% Similarity=-0.094 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011102 298 PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLS-------------QQDCTAIMKVGIRLQKFGVVESLFHWFTHS 364 (493)
Q Consensus 298 ~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 364 (493)
...|..+-..+.+. |++++|...|++..+...-.++ ...|..+-.+|.+.|++++|+..|++..+.
T Consensus 268 a~~~~~~G~~~~~~-g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKG-GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 44566666777777 8888888888877653111111 355666666666666666666666665543
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 011102 365 GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF-DLPAYRVVIKLFVALNDISRAI 425 (493)
Q Consensus 365 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~p-d~~ty~~li~~~~~~g~~~~A~ 425 (493)
. +.+...|..+-.+|...|++++|...|++..+. .| +...+..+-..+.+.|+.++|.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 234556666666666666666666666665543 22 2234555555555555555544
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.11 E-value=0.013 Score=46.98 Aligned_cols=90 Identities=10% Similarity=-0.047 Sum_probs=57.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 011102 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTV---VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD----LPAYRVVIKL 414 (493)
Q Consensus 342 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd----~~ty~~li~~ 414 (493)
-..+.+.|++++|.+.|++..+..-. +. ..+..+-..|.+.|++++|...|++..+.. |+ ...+..+-..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHH
Confidence 34556677777777777776653211 11 356666677777777777777777766542 22 4456666667
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 011102 415 FVALNDISRAIRYFSKLKEA 434 (493)
Q Consensus 415 ~~~~g~~~~A~~~~~~m~~~ 434 (493)
+.+.|++++|...|+...+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777643
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.08 E-value=0.003 Score=64.40 Aligned_cols=83 Identities=11% Similarity=-0.043 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 011102 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392 (493)
Q Consensus 313 ~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 392 (493)
|++++|.+.+++..+. -.-+...|..+-.+|.+.|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++|++.
T Consensus 20 g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~ 96 (477)
T 1wao_1 20 KDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRD 96 (477)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4555555555554433 11234444555555555555555555555544331 12344444445555555555555555
Q ss_pred HHHHHH
Q 011102 393 VWNMEA 398 (493)
Q Consensus 393 ~~~M~~ 398 (493)
|++..+
T Consensus 97 ~~~al~ 102 (477)
T 1wao_1 97 YETVVK 102 (477)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.07 E-value=0.0062 Score=49.08 Aligned_cols=88 Identities=8% Similarity=0.012 Sum_probs=39.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 011102 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDIS 422 (493)
Q Consensus 343 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~ 422 (493)
..+.+.|++++|...|++..+.. +-+...|..+-..+...|++++|+..|++..+..- -+...+..+-..|.+.|+++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 34445555555555555544321 12344444444455555555555555544433211 12334444444444444555
Q ss_pred HHHHHHHHHH
Q 011102 423 RAIRYFSKLK 432 (493)
Q Consensus 423 ~A~~~~~~m~ 432 (493)
+|...|++..
T Consensus 103 ~A~~~~~~al 112 (121)
T 1hxi_A 103 AALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5544444443
No 175
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.06 E-value=0.0038 Score=63.74 Aligned_cols=124 Identities=10% Similarity=-0.101 Sum_probs=81.4
Q ss_pred HHHcCCHHHHHHHHHHHHHc---CCC---C-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----C-CCCCH-HHHHH
Q 011102 345 GIRLQKFGVVESLFHWFTHS---GRD---P-TVVMYTTLIHSRLSEKKCREALTVVWNMEAS-----N-CLFDL-PAYRV 410 (493)
Q Consensus 345 ~~~~g~~~~A~~l~~~m~~~---g~~---p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~-----g-i~pd~-~ty~~ 410 (493)
+...|++++|+.++++..+. -+- | ...+++.|...|...|++++|+.++++..+. | -.|++ .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567778887777665432 111 2 2466788888888888888888877775431 2 12333 56777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH-----HCCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 411 VIKLFVALNDISRAIRYFSKLK-----EAGF-CPT-YDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 411 li~~~~~~g~~~~A~~~~~~m~-----~~g~-~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
|-..|...|++++|..++++.. ..|- .|+ ..+.+.+-.++...|.+++|+.++..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877654 1231 122 33455666777778888888888888865
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.04 E-value=0.0013 Score=52.61 Aligned_cols=87 Identities=10% Similarity=-0.091 Sum_probs=68.7
Q ss_pred cCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 011102 382 SEKKCREALTVVWNMEASNC--LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKC 459 (493)
Q Consensus 382 ~~g~~~~A~~l~~~M~~~gi--~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 459 (493)
..|++++|+..|++..+.+. .-+...+..+-..|.+.|++++|...|++..+..-. +...|..+..+|.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 46889999999999887541 223467888888999999999999999999865432 578888999999999999999
Q ss_pred HHHHHHHHHC
Q 011102 460 RDVCKEAEMA 469 (493)
Q Consensus 460 ~~l~~~m~~~ 469 (493)
.+.+++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 177
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.01 E-value=0.27 Score=47.42 Aligned_cols=201 Identities=6% Similarity=-0.046 Sum_probs=128.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCC-CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHH----
Q 011102 278 NLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPD-KYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFG---- 352 (493)
Q Consensus 278 ~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~-~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~---- 352 (493)
.+++++++++.+.... .-+..+|+.--..+.+..+ +.++++++++.+.+. -.-|-..|+--...+.+.|.++
T Consensus 104 ~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~ 180 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISE 180 (349)
T ss_dssp CHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCH
T ss_pred hHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccch
Confidence 4788888888888754 2244556643333322212 567888888888765 2346667776555555555555
Q ss_pred ----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011102 353 ----VVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK-------CREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDI 421 (493)
Q Consensus 353 ----~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~-------~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~ 421 (493)
++++.++++.+.. .-|...|+-.-..+.+.++ ++++++.++++..... -|...|+-+-..+.+.|+-
T Consensus 181 ~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 181 AQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCC
Confidence 8888888887653 4577888888888877776 6888888888776432 3566777666666665542
Q ss_pred --------------------HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHH
Q 011102 422 --------------------SRAIRYFSKLKEAG-----FCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476 (493)
Q Consensus 422 --------------------~~A~~~~~~m~~~g-----~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 476 (493)
.....+..++...+ -.+.......|.+.|...|+.++|.++++.+.+.-=+....
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~ 338 (349)
T 3q7a_A 259 LVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAG 338 (349)
T ss_dssp SGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred cccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHH
Confidence 33344444443222 13678888999999999999999999999986542233344
Q ss_pred HHHHHHH
Q 011102 477 TVVELLQ 483 (493)
Q Consensus 477 t~~~Ll~ 483 (493)
-|+...+
T Consensus 339 yw~~~~~ 345 (349)
T 3q7a_A 339 YWEFRRR 345 (349)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.98 E-value=0.022 Score=48.07 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 406 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
..|..+-.+|.+.|++++|...++...+.. .-+...|..+-.+|...|++++|.+.|++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 456666666777777777777777666543 12456666677777777777777777776655
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.94 E-value=0.011 Score=47.53 Aligned_cols=93 Identities=9% Similarity=-0.141 Sum_probs=58.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 011102 374 TTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453 (493)
Q Consensus 374 ~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 453 (493)
..+-..+.+.|++++|...|++..+..- -+...|..+-..+...|++++|...|++..+..- -+...|..+-.+|.+.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 3444556667777777777776655321 2455566666666777777777777776664432 1455666666677777
Q ss_pred CCHHHHHHHHHHHHH
Q 011102 454 GRLAKCRDVCKEAEM 468 (493)
Q Consensus 454 g~~~~A~~l~~~m~~ 468 (493)
|++++|.+.+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777776654
No 180
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.91 E-value=0.017 Score=54.19 Aligned_cols=98 Identities=12% Similarity=0.008 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011102 334 SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413 (493)
Q Consensus 334 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~ 413 (493)
+...+..+-..+.+.|++++|...|++..+.. +-+...|..+-..|.+.|++++|.+.+++..+.. .-+...+..+-.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45677788889999999999999999987652 2378889999999999999999999999887642 235678888889
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 011102 414 LFVALNDISRAIRYFSKLKE 433 (493)
Q Consensus 414 ~~~~~g~~~~A~~~~~~m~~ 433 (493)
+|.+.|++++|...|+...+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.86 E-value=0.011 Score=59.87 Aligned_cols=129 Identities=12% Similarity=0.029 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 011102 263 KGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLD----------------PSIYAKLILELGKNPDKYMLVMTLLDELG 326 (493)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----------------~~t~~~li~~~~~~~~~~~~a~~l~~~m~ 326 (493)
...|..+-..|.+.|++++|...|++..+.. |+ ...|..+-.+|.+. |++++|+..+++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-g~~~~A~~~~~~al 344 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKL-REYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHH
Confidence 3468888899999999999999999988743 33 57888888899999 99999999999987
Q ss_pred hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHH-HHHHHHH
Q 011102 327 QRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP-TVVMYTTLIHSRLSEKKCREALT-VVWNMEA 398 (493)
Q Consensus 327 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~-l~~~M~~ 398 (493)
.. -.-+...|..+-.+|.+.|++++|...|++..+. .| +...|..+-..+.+.++.++|.+ ++..|..
T Consensus 345 ~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 345 GL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 75 2346788999999999999999999999998754 34 45678888888888888887764 4555543
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.85 E-value=0.0056 Score=62.39 Aligned_cols=122 Identities=11% Similarity=-0.012 Sum_probs=89.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc
Q 011102 269 TAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRL 348 (493)
Q Consensus 269 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~ 348 (493)
+-..+.+.|++++|.+.|++..+.. .-+..+|..+-..|.+. |++++|.+.+++..+. -.-+...|..+-.+|.+.
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRT-ECYGYALGDATRAIEL--DKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 3345778899999999999998853 22477888899999999 9999999999998875 234677889999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHcCCCHHHHHHHHHH
Q 011102 349 QKFGVVESLFHWFTHSGRDPTVVMYTTLIHS--RLSEKKCREALTVVWN 395 (493)
Q Consensus 349 g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~--~~~~g~~~~A~~l~~~ 395 (493)
|++++|.+.|++..+.. +-+...+..+-.+ +.+.|++++|++++++
T Consensus 88 g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 88 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999987642 1122334444444 7777888888888775
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.82 E-value=0.015 Score=57.12 Aligned_cols=90 Identities=9% Similarity=0.032 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011102 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRI 449 (493)
Q Consensus 370 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~ 449 (493)
...|+.+-.+|.+.|++++|++.+++..+..- -+...|..+-.+|.+.|++++|...|++..+..- -+...+..+-..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 45566666667777777777777776665321 2455666666677777777777777776664321 145555566666
Q ss_pred HHHcCCHHHHHH
Q 011102 450 FMASGRLAKCRD 461 (493)
Q Consensus 450 ~~~~g~~~~A~~ 461 (493)
+.+.++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666555543
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.80 E-value=0.0075 Score=61.50 Aligned_cols=125 Identities=10% Similarity=-0.026 Sum_probs=93.0
Q ss_pred HhcCCCCHHHHHHHHHHHhhc--CCCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCC-CCC-HHHHH
Q 011102 308 LGKNPDKYMLVMTLLDELGQR--DDLN---LS-QQDCTAIMKVGIRLQKFGVVESLFHWFTH-----SGR-DPT-VVMYT 374 (493)
Q Consensus 308 ~~~~~~~~~~a~~l~~~m~~~--~g~~---p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~-~p~-~~ty~ 374 (493)
+-.. |++++|+.++++.... .-+. |+ ..+++.|...|...|++++|+.++++..+ .|- .|+ ..+|+
T Consensus 319 ~~~q-g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 319 ARSE-GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHhC-CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4456 9999999998876432 0122 22 45789999999999999999999988653 222 233 47799
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 375 TLIHSRLSEKKCREALTVVWNMEA-----SNC-LFDL-PAYRVVIKLFVALNDISRAIRYFSKLKE 433 (493)
Q Consensus 375 ~li~~~~~~g~~~~A~~l~~~M~~-----~gi-~pd~-~ty~~li~~~~~~g~~~~A~~~~~~m~~ 433 (493)
.|-..|...|++++|+.++++..+ .|- .|++ .+.+.+-.++...|.+++|+.+|..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998653 232 1333 3456666778888999999999999874
No 185
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.78 E-value=0.025 Score=46.73 Aligned_cols=113 Identities=12% Similarity=-0.008 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 011102 349 QKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVA----LNDISRA 424 (493)
Q Consensus 349 g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~----~g~~~~A 424 (493)
+++++|.+.|++..+.| .++.. |-..|...+.+++|.+.|++..+.| +...+..|=..|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45677777777776666 33333 4455555566777777777776654 45566666666666 6778888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCc
Q 011102 425 IRYFSKLKEAGFCPTYDIYRDMIRIFMA----SGRLAKCRDVCKEAEMAGFK 472 (493)
Q Consensus 425 ~~~~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~ 472 (493)
.++|+.-.+.| +...+..|-..|.. .++.++|.+.|++..+.|..
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 88887777664 45566667677777 77888888888887777643
No 186
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.60 E-value=0.086 Score=56.87 Aligned_cols=150 Identities=15% Similarity=0.071 Sum_probs=89.0
Q ss_pred CCCCHHHHHH-HHhhhcc-cCcHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHH
Q 011102 179 SHKDVAEVLD-KCGRFLR-KGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLEN 256 (493)
Q Consensus 179 ~~~~~~~a~~-~~~~m~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~ 256 (493)
..+++++|.+ .+ .+.+ .+....++..+.+.|.+++|+++.+.-.. -.......|+++ +++..
T Consensus 611 ~~~~~~~a~~~~l-~~i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~-------------~f~~~l~~~~~~--~A~~~ 674 (814)
T 3mkq_A 611 LRGEIEEAIENVL-PNVEGKDSLTKIARFLEGQEYYEEALNISPDQDQ-------------KFELALKVGQLT--LARDL 674 (814)
T ss_dssp HTTCHHHHHHHTG-GGCCCHHHHHHHHHHHHHTTCHHHHHHHCCCHHH-------------HHHHHHHHTCHH--HHHHH
T ss_pred HhCCHHHHHHHHH-hcCCchHHHHHHHHHHHhCCChHHheecCCCcch-------------heehhhhcCCHH--HHHHH
Confidence 3577788777 44 2333 44557777788888888888876632211 012234456643 34444
Q ss_pred hhccCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHH
Q 011102 257 FVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQ 336 (493)
Q Consensus 257 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~ 336 (493)
...+.+...|..|-..+.+.|+++.|.+.|..+.+ |..+...+... ++.+...++-+..... |
T Consensus 675 ~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~-~~~~~~~~~~~~a~~~-~------ 737 (814)
T 3mkq_A 675 LTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSF-NNKEGLVTLAKDAETT-G------ 737 (814)
T ss_dssp HTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHT-TCHHHHHHHHHHHHHT-T------
T ss_pred HHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHc-CCHHHHHHHHHHHHHc-C------
Confidence 66666777888888888888888888888887654 34444444445 5666555554444443 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWF 361 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m 361 (493)
-++....+|.+.|++++|.++|.++
T Consensus 738 ~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1344444555566666666555443
No 187
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.48 E-value=0.21 Score=50.85 Aligned_cols=187 Identities=11% Similarity=0.078 Sum_probs=123.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcC--------CCCC
Q 011102 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRD--------DLNL 333 (493)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~--------g~~p 333 (493)
...+|-..+.-+.+.|+++.|..+|++.... |...........+.+. + +. ++.+.... +..+
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~-~---~~---~~~l~~~~~~~~~~~~~~~~ 281 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDE-E---AV---YGDLKRKYSMGEAESAEKVF 281 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTC-T---HH---HHHHHHHTC----------C
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcch-h---HH---HHHHHHHHHhhccchhhhhc
Confidence 4557777778888999999999999999987 4433222211112122 2 11 22222110 0001
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHH
Q 011102 334 ---SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYT--TLIHSRLSEKKCREALTVVWNMEASNCLFD-LPA 407 (493)
Q Consensus 334 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~--~li~~~~~~g~~~~A~~l~~~M~~~gi~pd-~~t 407 (493)
....|-..+..+.+.+.++.|..+|+.....+ .+...|- +.+...+ .++.+.|.++|+...+.- |+ ...
T Consensus 282 ~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~ 356 (493)
T 2uy1_A 282 SKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLL 356 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHH
Confidence 12456667777777889999999999882222 2333343 4444333 236999999999977642 33 344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 408 YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 408 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
+...++...+.|+.+.|..+|+... -....|...++--...|+.+.+.++++++.+
T Consensus 357 ~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 357 KEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5667777888999999999999973 2577899998888888999999999888864
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.44 E-value=0.029 Score=54.95 Aligned_cols=137 Identities=9% Similarity=-0.065 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKV 344 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~ 344 (493)
.|..+-..+.+.|++++|++.|++..+.- ++. ... ...+++.+ . -..+...|..+-.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~-~~~~~~~~-------~--~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAA-AEDADGAK-------L--QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHH-SCHHHHGG-------G--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccc-cChHHHHH-------H--HHHHHHHHHHHHHH
Confidence 57778888899999999999998876510 000 000 01111110 0 00123455566666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHH
Q 011102 345 GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF-DLPAYRVVIKLFVALNDISR 423 (493)
Q Consensus 345 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~p-d~~ty~~li~~~~~~g~~~~ 423 (493)
|.+.|++++|++.+++..+.. +-+...|..+-.+|...|++++|++.|++..+. .| +...+..+-..+.+.++.++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665432 224566666666666777777777776665543 23 34455555555555666655
Q ss_pred HHH
Q 011102 424 AIR 426 (493)
Q Consensus 424 A~~ 426 (493)
+.+
T Consensus 360 a~k 362 (370)
T 1ihg_A 360 KEK 362 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.43 E-value=0.0091 Score=57.75 Aligned_cols=147 Identities=13% Similarity=-0.058 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011102 298 PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLI 377 (493)
Q Consensus 298 ~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 377 (493)
...+..+-..+.+. |++++|...|++.... .|+... +...|+.+++...+ . ...|+.+-
T Consensus 179 a~~~~~~g~~~~~~-g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla 237 (338)
T 2if4_A 179 ADRRKMDGNSLFKE-EKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHTCSS-SCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHH
Confidence 45566667777888 9999999999987654 244331 12223333333222 1 13677777
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHHcCC
Q 011102 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPT-YDIYRDMIRI-FMASGR 455 (493)
Q Consensus 378 ~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ty~~li~~-~~~~g~ 455 (493)
.+|.+.|++++|+..+++..+.. .-+...|..+-.+|...|++++|...|++..+. .|+ ...+..+... ....+.
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHH
Confidence 88888888888888888776542 135667777888888888888888888877532 232 3334444433 233456
Q ss_pred HHHHHHHHHHHHH
Q 011102 456 LAKCRDVCKEAEM 468 (493)
Q Consensus 456 ~~~A~~l~~~m~~ 468 (493)
.+++.++|..|..
T Consensus 315 ~~~a~~~~~~~l~ 327 (338)
T 2if4_A 315 YQKQKEMYKGIFK 327 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHHhhC
Confidence 6677777777754
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.32 E-value=0.064 Score=45.07 Aligned_cols=96 Identities=9% Similarity=-0.052 Sum_probs=59.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-------C----------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 011102 338 CTAIMKVGIRLQKFGVVESLFHWFTHS-------G----------RDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN 400 (493)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~l~~~m~~~-------g----------~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g 400 (493)
+...-..+.+.|++++|...|.+..+. . -+-+...|..+-.+|.+.|++++|+..+++..+..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 344445555666666666666554432 0 01223566777777777777777777777766542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 401 CLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA 434 (493)
Q Consensus 401 i~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~ 434 (493)
.-+...|..+-.+|...|++++|...|+...+.
T Consensus 94 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 94 -ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 224566777777777777777777777776643
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.25 E-value=0.17 Score=42.78 Aligned_cols=77 Identities=13% Similarity=0.067 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHH-----CCC
Q 011102 407 AYRVVIKLFVALNDISRAIRYFSKLKEA-----GFCPT-YDIY----RDMIRIFMASGRLAKCRDVCKEAEM-----AGF 471 (493)
Q Consensus 407 ty~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-~~ty----~~li~~~~~~g~~~~A~~l~~~m~~-----~g~ 471 (493)
.|+.+-.++.+.|++++|...+++-.+. .+.|+ ...| ...-.++...|++++|++.|++..+ .|+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555555566666666666666655542 12343 3455 6666677777777777777777753 466
Q ss_pred ccCHHHHHHHHH
Q 011102 472 KLDKQTVVELLQ 483 (493)
Q Consensus 472 ~pd~~t~~~Ll~ 483 (493)
.+........+.
T Consensus 139 ~~~~~~~~~~~~ 150 (159)
T 2hr2_A 139 TPGKERMMEVAI 150 (159)
T ss_dssp CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666555554444
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.0059 Score=47.47 Aligned_cols=63 Identities=13% Similarity=0.055 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433 (493)
Q Consensus 370 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 433 (493)
...|..+-..+.+.|++++|.+.|++..+.. ..+...|..+-.+|.+.|++++|...|++..+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3445555555555566666666665554431 12344555555556666666666666665553
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.16 E-value=0.087 Score=43.31 Aligned_cols=111 Identities=9% Similarity=-0.028 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----cCCHH
Q 011102 277 GNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIR----LQKFG 352 (493)
Q Consensus 277 g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~ 352 (493)
++.++|.+.|++..+.| .|+.. +..+...++.+++|.+.|++..+. | +...+..|-..|.. .++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~-----lg~~y~~g~~~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC-----LSLVSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH-----HHHHTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh-----HHHHHHcCCCHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHcCCCCCccHH
Confidence 34566677776666665 22222 222222325566666666666554 2 44555555555555 55666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCC
Q 011102 353 VVESLFHWFTHSGRDPTVVMYTTLIHSRLS----EKKCREALTVVWNMEASN 400 (493)
Q Consensus 353 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~M~~~g 400 (493)
+|.+.|++-.+.| +...+..|-..|.. .++.++|.+.|++..+.|
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666555443 34444555555554 455555555555555544
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.06 E-value=0.015 Score=56.18 Aligned_cols=146 Identities=10% Similarity=-0.041 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 011102 264 GVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMK 343 (493)
Q Consensus 264 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~ 343 (493)
..|..+-..+.+.|++++|...|++..+.. |+... +... ++..++...+ . ...|..+-.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~-~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLY-GKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCC-HHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhc-ccHHHHHHHH---H--------HHHHHHHHH
Confidence 346677788889999999999999877642 44332 2233 4445444322 1 126777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH-HHHcCCH
Q 011102 344 VGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL-PAYRVVIKL-FVALNDI 421 (493)
Q Consensus 344 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~-~ty~~li~~-~~~~g~~ 421 (493)
+|.+.|++++|...|++..+.. +-+...|..+-.+|...|++++|.+.|++..+. .|+. ..+..+-.. ....+..
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHH
Confidence 8889999999999998877542 346788888999999999999999999887643 3443 333333333 2345677
Q ss_pred HHHHHHHHHHHH
Q 011102 422 SRAIRYFSKLKE 433 (493)
Q Consensus 422 ~~A~~~~~~m~~ 433 (493)
+.+..+|..|..
T Consensus 316 ~~a~~~~~~~l~ 327 (338)
T 2if4_A 316 QKQKEMYKGIFK 327 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHHhhC
Confidence 788888888864
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.01 E-value=0.041 Score=43.20 Aligned_cols=62 Identities=13% Similarity=-0.007 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 370 VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 370 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
...|..+-..|...|++++|.+.|++..+..- .+...|..+-..|.+.|++++|...|+...
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444445555555555555544443211 123344444444555555555555554443
No 196
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.98 E-value=0.11 Score=56.08 Aligned_cols=98 Identities=12% Similarity=0.137 Sum_probs=52.0
Q ss_pred HhcCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHH
Q 011102 274 VKGGNLKLAWK-LLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFG 352 (493)
Q Consensus 274 ~~~g~~~~A~~-l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 352 (493)
...+++++|.+ ++..+ ++......++..+.+. |.+++|+++.+.-.. -.......|+++
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~-~~~~~a~~~~~~~~~-------------~f~~~l~~~~~~ 669 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQ-EYYEEALNISPDQDQ-------------KFELALKVGQLT 669 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHT-TCHHHHHHHCCCHHH-------------HHHHHHHHTCHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhC-CChHHheecCCCcch-------------heehhhhcCCHH
Confidence 34566666665 44211 1112224555555555 666666655421111 122334566666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011102 353 VVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397 (493)
Q Consensus 353 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~ 397 (493)
+|+++.+.+ .+...|..|-..+.+.|+++.|.+.|..+.
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 666665433 345566666666666777777766666654
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.95 E-value=0.3 Score=41.26 Aligned_cols=108 Identities=11% Similarity=-0.014 Sum_probs=70.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--------H-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----
Q 011102 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPT--------V-----VMYTTLIHSRLSEKKCREALTVVWNMEAS----- 399 (493)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------~-----~ty~~li~~~~~~g~~~~A~~l~~~M~~~----- 399 (493)
+...-..+.+.|++++|...|++..+. .|+ . ..|+.+-.++.+.|++++|+..+++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 334445566777777777777766543 222 2 37788888888888888888888776653
Q ss_pred CCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCCCHHHHHHHH
Q 011102 400 NCLFDL-PAY----RVVIKLFVALNDISRAIRYFSKLK-----EAGFCPTYDIYRDMI 447 (493)
Q Consensus 400 gi~pd~-~ty----~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~ty~~li 447 (493)
.+.||. ..| ...=.++...|++++|...|++.. ..|+.+......-.|
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 235654 355 666677888888888888888765 355555544444333
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.0079 Score=46.72 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=8.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Q 011102 373 YTTLIHSRLSEKKCREALTVVWN 395 (493)
Q Consensus 373 y~~li~~~~~~g~~~~A~~l~~~ 395 (493)
|..+-.+|.+.|++++|++.+++
T Consensus 41 ~~~lg~~~~~~g~~~~A~~~~~~ 63 (111)
T 2l6j_A 41 YSNKAMALIKLGEYTQAIQMCQQ 63 (111)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH
Confidence 33333333333333333333333
No 199
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=95.86 E-value=1.3 Score=42.26 Aligned_cols=192 Identities=11% Similarity=0.044 Sum_probs=129.8
Q ss_pred hcCCH-HHHHHHHHHHHhCCCCCCHH-HHHH---HHHHHhcCC------CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 011102 275 KGGNL-KLAWKLLMVAKDGGRMLDPS-IYAK---LILELGKNP------DKYMLVMTLLDELGQRDDLNLSQQDCTAIMK 343 (493)
Q Consensus 275 ~~g~~-~~A~~l~~~m~~~g~~pd~~-t~~~---li~~~~~~~------~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~ 343 (493)
+.|.+ ++|+++++.+.... |+-. .|+. ++....+.. ..+++++.+++.+... -.-+..+|+---.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--~PKny~aW~hR~w 116 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCW 116 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 44554 47889998888754 5443 3542 333333210 1167888888888765 3346778887777
Q ss_pred HHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--
Q 011102 344 VGIRLQK--FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK-CREALTVVWNMEASNCLFDLPAYRVVIKLFVAL-- 418 (493)
Q Consensus 344 ~~~~~g~--~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~-~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~-- 418 (493)
.+.+.|+ +++++++++.+.+.. +.|-.+|+----.+...|. ++++++.++++.+... -|...|+..-..+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhh
Confidence 7777774 889999999887653 4577888877777777787 5899999998887654 4666676655554444
Q ss_pred ------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCCCccCH
Q 011102 419 ------------NDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS-----------GRLAKCRDVCKEAEMAGFKLDK 475 (493)
Q Consensus 419 ------------g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~pd~ 475 (493)
+.++++.+++......... |...|+-+-..+.+. +.++++++.++++.+ +.||.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~ 271 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPEN 271 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCccc
Confidence 4578888888888765432 677777555555544 457888888888876 45554
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.84 E-value=0.12 Score=38.05 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=10.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 408 YRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 408 y~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
+..+-..+.+.|++++|...|++..
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 46 WYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333334444444444444444433
No 201
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=95.81 E-value=1.4 Score=42.30 Aligned_cols=184 Identities=10% Similarity=-0.089 Sum_probs=134.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcCCC-CHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLD-PSIYAKLILELGKNPD-KYMLVMTLLDELGQRDDLNLSQQDCTAIM 342 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~~~-~~~~a~~l~~~m~~~~g~~p~~~~~~~li 342 (493)
.++.+-....+.+..++|+++++++.... |+ ..+|+.--..+... + .+++++++++.+... -.-+...|+---
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l-~~~l~eEL~~~~~~L~~--nPKny~aW~hR~ 130 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSL-NKSLEDELRLMNEFAVQ--NLKSYQVWHHRL 130 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 34555555566677789999999998854 54 34566655555566 5 599999999999875 345677888777
Q ss_pred HHHHHc-C-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHH
Q 011102 343 KVGIRL-Q-KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR--------EALTVVWNMEASNCLFDLPAYRVVI 412 (493)
Q Consensus 343 ~~~~~~-g-~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~--------~A~~l~~~M~~~gi~pd~~ty~~li 412 (493)
..+.+. + +.++++++++.+.+.. ..|-.+|+--.-.+.+.|.++ ++++.++++.+... -|...|+---
T Consensus 131 wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~ 208 (349)
T 3q7a_A 131 LLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRW 208 (349)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 777776 7 8899999999998543 457778876555555555555 89999999988654 4777888777
Q ss_pred HHHHHcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011102 413 KLFVALND-------ISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRL 456 (493)
Q Consensus 413 ~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 456 (493)
..+.+.+. ++++++.+++....... |...|+-+-..+.+.|+.
T Consensus 209 ~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 209 YLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCC
Confidence 77777776 78999999988866543 778888777777776654
No 202
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.74 E-value=0.51 Score=48.92 Aligned_cols=129 Identities=6% Similarity=-0.030 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHH
Q 011102 351 FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK--KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALN-DISRAIRY 427 (493)
Q Consensus 351 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g--~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g-~~~~A~~~ 427 (493)
++++++.++.+.+.. +-+..+|+----.+.+.| +++++++.++++.+... -|...|+.---.+.+.| ..+++.+.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHH
Confidence 566666666665432 335556666555566666 55777777777666543 25556665555555666 67777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 011102 428 FSKLKEAGFCPTYDIYRDMIRIFMAS--------------GRLAKCRDVCKEAEMAGFKLDKQTVVELLQ 483 (493)
Q Consensus 428 ~~~m~~~g~~p~~~ty~~li~~~~~~--------------g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~ 483 (493)
++++.+.... |...|+..-..+.+. +.+++|.+.+++..... .-|...|..+--
T Consensus 167 ~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ 234 (567)
T 1dce_A 167 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRW 234 (567)
T ss_dssp HHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHH
T ss_pred HHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHH
Confidence 7777665543 666666666555552 55788888888887642 225556655443
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.70 E-value=0.12 Score=40.35 Aligned_cols=79 Identities=9% Similarity=-0.126 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011102 317 LVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396 (493)
Q Consensus 317 ~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M 396 (493)
+|.+.|++..+. -.-+...+..+-..|.+.|++++|...|++..+.. +.+...|..+-..|...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555555443 12345666777777777777777777777766542 234566777777777777777777777765
Q ss_pred HH
Q 011102 397 EA 398 (493)
Q Consensus 397 ~~ 398 (493)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 204
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.53 E-value=0.78 Score=37.30 Aligned_cols=138 Identities=13% Similarity=0.051 Sum_probs=76.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011102 276 GGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVE 355 (493)
Q Consensus 276 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 355 (493)
.|.+++..++..+.... -+..-||.+|.-.... -+-+...++++.+..-.++ ..+|++....
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~-a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi 81 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLES-IDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVV 81 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHH-CCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchh-hchhHHHHHHHHHhhhcCc--------------HhhhcHHHHH
Confidence 46677777777776664 3556666666666666 5566666666666543221 1334444444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 011102 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435 (493)
Q Consensus 356 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g 435 (493)
..+-.+- .+....+.-++.+...|+-+.-.++..++.. +.+|+....-.+-.||.+.|+..+|.+++.+.-+.|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 4443332 2223345555566666666666666666322 334555555566666666666666666666666665
Q ss_pred CC
Q 011102 436 FC 437 (493)
Q Consensus 436 ~~ 437 (493)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 53
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.52 E-value=0.19 Score=36.85 Aligned_cols=64 Identities=5% Similarity=-0.044 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 011102 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS 399 (493)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~ 399 (493)
...+..+-..|.+.|++++|...|++..+.. +.+...|..+-..|.+.|++++|.+.|++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455556666777777777777777665432 235566677777777777777777777776553
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.44 E-value=0.082 Score=40.52 Aligned_cols=62 Identities=11% Similarity=-0.003 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011102 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397 (493)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~ 397 (493)
...+..+-..|.+.|++++|.+.|++..+.. +-+...|..+-.+|...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555566666666666666666655432 1234455666666666666666666666543
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.36 E-value=0.1 Score=39.90 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 369 ~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
+...|..+-..|.+.|++++|.+.|++..+..- -+...|..+-.+|.+.|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455666666677777777777777776655421 134456666666677777777776666554
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.30 E-value=0.13 Score=51.34 Aligned_cols=87 Identities=15% Similarity=0.111 Sum_probs=62.2
Q ss_pred cCCCHHHHHHHHHHHHHC--C-CCC---C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CCCC-HHHHHHHH
Q 011102 382 SEKKCREALTVVWNMEAS--N-CLF---D-LPAYRVVIKLFVALNDISRAIRYFSKLKE-----AG-FCPT-YDIYRDMI 447 (493)
Q Consensus 382 ~~g~~~~A~~l~~~M~~~--g-i~p---d-~~ty~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~ty~~li 447 (493)
..|++++|+.++++..+. . +-| + ..+++.|-..|...|++++|..++++..+ .| -.|+ ..+|+.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 347788888888875542 1 222 2 35788888888889999998888887652 22 1233 35688888
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 011102 448 RIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 448 ~~~~~~g~~~~A~~l~~~m~~ 468 (493)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 889999999999988887753
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.27 E-value=0.098 Score=52.26 Aligned_cols=92 Identities=13% Similarity=0.034 Sum_probs=65.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHC--C-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CCCC-HHH
Q 011102 377 IHSRLSEKKCREALTVVWNMEAS--N-CLFD----LPAYRVVIKLFVALNDISRAIRYFSKLKE-----AG-FCPT-YDI 442 (493)
Q Consensus 377 i~~~~~~g~~~~A~~l~~~M~~~--g-i~pd----~~ty~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~t 442 (493)
+..+.+.|++++|++++++..+. . +-|+ ..+++.|...|...|++++|..++++..+ .| -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566778888888888877643 1 2222 35788888888889999999888887652 12 2233 356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 443 YRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 443 y~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
|+.|-..|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888889999999999988887753
No 210
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.20 E-value=0.77 Score=47.52 Aligned_cols=175 Identities=9% Similarity=-0.043 Sum_probs=127.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhcCCCC----------HHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 011102 275 KGGNLKLAWKLLMVAKDGGRMLDP-SIYAKLILELGKNPDK----------YMLVMTLLDELGQRDDLNLSQQDCTAIMK 343 (493)
Q Consensus 275 ~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~li~~~~~~~~~----------~~~a~~l~~~m~~~~g~~p~~~~~~~li~ 343 (493)
....-++|++.++++.... |+- ..|+.-=..+... ++ ++++++.++.+.+. -.-+..+|+---.
T Consensus 41 ~~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l-~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w 115 (567)
T 1dce_A 41 AGELDESVLELTSQILGAN--PDFATLWNCRREVLQHL-ETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCW 115 (567)
T ss_dssp TTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH-HTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhc-ccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3445578899999998854 543 4455433333333 33 89999999998875 3456778888888
Q ss_pred HHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--
Q 011102 344 VGIRLQ--KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK-KCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL-- 418 (493)
Q Consensus 344 ~~~~~g--~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g-~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~-- 418 (493)
.+.+.| +++++++.++++.+.. ..|..+|+---..+.+.| ..+++++.++++.+... -|...|+..-..+.+.
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSC
T ss_pred HHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhcc
Confidence 888889 7799999999998754 457888998888888888 89999999999887654 3677777766666553
Q ss_pred ------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 011102 419 ------------NDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457 (493)
Q Consensus 419 ------------g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 457 (493)
+.+++|.++++......- -|...|+.+-..+.+.++.+
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCS
T ss_pred cccccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCcc
Confidence 567899999988875442 26777887777777766643
No 211
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.09 E-value=0.82 Score=37.20 Aligned_cols=137 Identities=6% Similarity=-0.083 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 011102 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392 (493)
Q Consensus 313 ~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 392 (493)
|.+++..++..+.... -+..-||-+|--....-+-+-..++++.+-+ -.|. ...|++.....-
T Consensus 21 G~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 21 GYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHHHH
T ss_pred hhHHHHHHHHHHHcCC----CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHHHH
Confidence 6666666666666554 2444555555444444444444444444421 2222 123333333333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc
Q 011102 393 VWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFK 472 (493)
Q Consensus 393 ~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 472 (493)
+-.+- -+..-+...++.+..+|+-|+-.+++.++.. ..+|+....-.+-.||.+.|+..+|.+++.+..++|++
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33221 2445567788889999999999999999643 44578888889999999999999999999999999986
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.86 E-value=0.092 Score=52.48 Aligned_cols=91 Identities=11% Similarity=-0.083 Sum_probs=61.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----C-CCCCH-HH
Q 011102 342 MKVGIRLQKFGVVESLFHWFTHS---GRDP----TVVMYTTLIHSRLSEKKCREALTVVWNMEAS-----N-CLFDL-PA 407 (493)
Q Consensus 342 i~~~~~~g~~~~A~~l~~~m~~~---g~~p----~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~-----g-i~pd~-~t 407 (493)
+..+.+.|++++|+.++++..+. -+.| ...+++.|...|...|++++|+.++++..+- | -.|++ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44455667777887777776532 1112 2456778888888888888888888776431 2 22333 56
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 408 YRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 408 y~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
|+.|-..|...|++++|..++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7788888888888888888887654
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.80 E-value=0.16 Score=50.67 Aligned_cols=85 Identities=9% Similarity=0.039 Sum_probs=62.5
Q ss_pred cCCHHHHHHHHHHHHH---cCCCC---C-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----C-CCCCH-HHHHHHHH
Q 011102 348 LQKFGVVESLFHWFTH---SGRDP---T-VVMYTTLIHSRLSEKKCREALTVVWNMEAS-----N-CLFDL-PAYRVVIK 413 (493)
Q Consensus 348 ~g~~~~A~~l~~~m~~---~g~~p---~-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~-----g-i~pd~-~ty~~li~ 413 (493)
.|++++|+.++++..+ .-+.| + ..+++.|..+|...|++++|+.++++..+- | -.|++ .+|+.|-.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4678888888877653 21222 2 477888999999999999999888886531 2 22443 56888888
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 011102 414 LFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 414 ~~~~~g~~~~A~~~~~~m~ 432 (493)
.|...|++++|..++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 8999999999999888754
No 214
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=94.59 E-value=3.3 Score=39.48 Aligned_cols=181 Identities=8% Similarity=-0.107 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCC--CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC-HHHHH
Q 011102 279 LKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPD--KYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQK-FGVVE 355 (493)
Q Consensus 279 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~--~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~-~~~A~ 355 (493)
+++++.+++.+.... +-+..+|+.---.+.+. + .+++++++++.+.+. -.-|-..|+---..+.+.|. +++++
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l-~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL-PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhcc-CcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 456666666666532 22455565544444444 3 467777777777665 23456666666666666666 47777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcC--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---
Q 011102 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSE--------------KKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL--- 418 (493)
Q Consensus 356 ~l~~~m~~~g~~p~~~ty~~li~~~~~~--------------g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~--- 418 (493)
+.++++.+.. .-|...|+-.-..+.+. +.++++++.+....... +-|...|+-+--.+.+.
T Consensus 166 ~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 166 AFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCc
Confidence 7777776543 34555565544444333 34667777777765432 12444554333333333
Q ss_pred --------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHH
Q 011102 419 --------NDISRAIRYFSKLKEAGFCPTYDIYRDMIR-----IFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 419 --------g~~~~A~~~~~~m~~~g~~p~~~ty~~li~-----~~~~~g~~~~A~~l~~~m~~ 468 (493)
+.++++.+.++++.+.. ||. .|+.+-. +....|..+++...++++.+
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~--pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELE--PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHC--TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhC--ccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 45778888888887543 443 3432222 22235667777777777765
No 215
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=94.11 E-value=0.14 Score=43.16 Aligned_cols=86 Identities=13% Similarity=-0.024 Sum_probs=47.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH----------HHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 011102 345 GIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC----------REALTVVWNMEASNCLF-DLPAYRVVIK 413 (493)
Q Consensus 345 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~----------~~A~~l~~~M~~~gi~p-d~~ty~~li~ 413 (493)
..+.+.+++|.+.++...+.. +-+...|+.+-.++...+++ ++|+..|++..+. .| +..+|..+=.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ 88 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Confidence 345666777777777765542 33566666666666666554 3555555554443 23 2344555555
Q ss_pred HHHHcC-----------CHHHHHHHHHHHHH
Q 011102 414 LFVALN-----------DISRAIRYFSKLKE 433 (493)
Q Consensus 414 ~~~~~g-----------~~~~A~~~~~~m~~ 433 (493)
+|...| ++++|.+.|++..+
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 555443 45555555554443
No 216
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.93 E-value=2.2 Score=36.46 Aligned_cols=128 Identities=9% Similarity=0.033 Sum_probs=76.6
Q ss_pred HHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 011102 307 ELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKC 386 (493)
Q Consensus 307 ~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 386 (493)
-..+. |+++.|.++.+++ -+...|..|-+...+.|+++-|++.|.... | |..|.--|.-.|+.
T Consensus 14 LAL~l-g~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D---~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 14 LALEY-GNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQH------S---FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHT-TCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------C---HHHHHHHHHHHTCH
T ss_pred HHHhc-CCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------C---HHHHHHHHHHhCCH
Confidence 34455 7777777776554 356777777777777777777777777655 2 34444445556666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 387 REALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA 466 (493)
Q Consensus 387 ~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 466 (493)
++-.++-+.....|- ++.....+.-.|+++++.++|.+. |-.|.... .....|..+.|.++.+++
T Consensus 77 e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 666555554444432 556666666778888888777443 22221111 112246667777776655
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=93.64 E-value=3.3 Score=40.01 Aligned_cols=74 Identities=8% Similarity=-0.012 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHH
Q 011102 402 LFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVV 479 (493)
Q Consensus 402 ~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 479 (493)
..+..+|.++-..+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.+++... +.|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 3456666666666666677777777777777654 6666666666667777777777777776655 456555553
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.33 E-value=1 Score=37.57 Aligned_cols=79 Identities=11% Similarity=-0.035 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 011102 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALN---DISRAIRYFSKLKEAGFCP--TYDIYRDMIRIFMASGRLAKCRDV 462 (493)
Q Consensus 388 ~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~ty~~li~~~~~~g~~~~A~~l 462 (493)
.+.+-|.+..+.|. ++..+--.+--++++.+ +++++..+|++..+.. .| +...+-.|--+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 33344444333333 34444444444444444 4445555555554432 12 122333344444555555555555
Q ss_pred HHHHHH
Q 011102 463 CKEAEM 468 (493)
Q Consensus 463 ~~~m~~ 468 (493)
++.+.+
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555554
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=93.31 E-value=0.51 Score=35.33 Aligned_cols=54 Identities=9% Similarity=-0.090 Sum_probs=28.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011102 344 VGIRLQKFGVVESLFHWFTHSGRDPTVV-MYTTLIHSRLSEKKCREALTVVWNMEA 398 (493)
Q Consensus 344 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~-ty~~li~~~~~~g~~~~A~~l~~~M~~ 398 (493)
.+.+.|++++|.+.|++..+.. +.+.. .|..+-..|...|++++|.+.|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4445556666666665554431 12334 555555555555555555555555544
No 220
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=93.00 E-value=0.3 Score=41.14 Aligned_cols=95 Identities=12% Similarity=-0.038 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 011102 314 KYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQK----------FGVVESLFHWFTHSGRDP-TVVMYTTLIHSRLS 382 (493)
Q Consensus 314 ~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~ 382 (493)
.+++|.+.++...+. -.-+...|+.+-.++...++ +++|+..|++..+. .| +...|+.+-.+|..
T Consensus 17 ~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 17 LFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHH
Confidence 445555555544433 11234444444444444443 34666666665543 33 45566666666666
Q ss_pred C-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011102 383 E-----------KKCREALTVVWNMEASNCLFDLPAYRVVIKL 414 (493)
Q Consensus 383 ~-----------g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~ 414 (493)
. |++++|++.|++..+. .|+...|...+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 5 3778888888776653 5666666555443
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=92.19 E-value=2.7 Score=40.57 Aligned_cols=74 Identities=9% Similarity=-0.203 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011102 332 NLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYR 409 (493)
Q Consensus 332 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~ 409 (493)
..+...|.++-..+...|++++|...+++....+ |+...|..+-..+.-.|+.++|.+.+++.... .|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 4567777777666667788888888888887764 77777777777788888888888888776553 46666654
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=91.42 E-value=0.76 Score=34.29 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=36.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 377 IHSRLSEKKCREALTVVWNMEASNCLFDLP-AYRVVIKLFVALNDISRAIRYFSKLKEA 434 (493)
Q Consensus 377 i~~~~~~g~~~~A~~l~~~M~~~gi~pd~~-ty~~li~~~~~~g~~~~A~~~~~~m~~~ 434 (493)
...+.+.|++++|.+.|++..+..- -+.. .|..+-..|.+.|++++|...|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3456667777777777777665421 2334 5666666677777777777777776644
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.42 E-value=7.7 Score=33.09 Aligned_cols=98 Identities=10% Similarity=0.083 Sum_probs=49.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHH
Q 011102 274 VKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGV 353 (493)
Q Consensus 274 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 353 (493)
.+.|+++.|.++.+++ -+...|..|-...... |+++-|.+.|..... +..+.--|.-.|+.+.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~-gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQ-GNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHT-TCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHc-CChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHH
Confidence 3456666666655544 2455566666666665 666666666655532 2333334444455544
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 011102 354 VESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVW 394 (493)
Q Consensus 354 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~ 394 (493)
-.++-+.-...|- +|.-...+.-.|+++++.++|.
T Consensus 79 L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 79 LSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHH
Confidence 4433333232221 3444444555566666666554
No 224
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.99 E-value=7.8 Score=38.53 Aligned_cols=230 Identities=11% Similarity=0.063 Sum_probs=137.0
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHH----HHHcCCCchhhhHHHhhccC------------
Q 011102 198 SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEV----LARHHELKVPFKLENFVSLA------------ 261 (493)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~----~~~~g~~~~~~~l~~~~~~~------------ 261 (493)
....++..|...|+++...+.+..+.+..|..+... ..+|+. +......+....+.......
T Consensus 58 ~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai--~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~e 135 (445)
T 4b4t_P 58 VLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI--QYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVE 135 (445)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHH--HHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHH
Confidence 456788899999999999888887776656544443 334433 33334333222222221111
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCC---HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhc---CCCCC
Q 011102 262 SKGVLEATAKGFVKGGNLKLAWKLLMVAKD--GGRMLD---PSIYAKLILELGKNPDKYMLVMTLLDELGQR---DDLNL 333 (493)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~pd---~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~---~g~~p 333 (493)
.......|...|-..|++.+|.+++.++.. .|.... ...|-..+..|... +++..|..++...... ....|
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~-~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILK-GDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhhcccCCcH
Confidence 222456788999999999999999999864 232222 23456677788888 9999999999886431 01222
Q ss_pred C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHH-----HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 011102 334 S--QQDCTAIMKVGIRLQKFGVVESLFHWFTHS-GRDPTVVMY-----TTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405 (493)
Q Consensus 334 ~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty-----~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~ 405 (493)
+ ...|...+..+...+++.+|.+.|.+..+. ...-|...+ .+++.... .+....-.+++.......-.++.
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iL-a~~~~~~~~ll~~~~~~~~~~~l 293 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVL-SPYGNLQNDLIHKIQNDNNLKKL 293 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-SSCSSTTHHHHHSHHHHSSCHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHhhccccccc
Confidence 2 235677788888899999999888877531 111222222 22222222 22222222333333332223677
Q ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHH
Q 011102 406 PAYRVVIKLFVALN--DISRAIRYFSKL 431 (493)
Q Consensus 406 ~ty~~li~~~~~~g--~~~~A~~~~~~m 431 (493)
..|..++.+|.... +++.+.+.|...
T Consensus 294 ~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 294 ESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 88999999997753 566666666543
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=89.58 E-value=2.3 Score=32.46 Aligned_cols=65 Identities=12% Similarity=-0.001 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 369 TVVMYTTLIHSRLSEKKCREALTVVWNMEAS------NCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKE 433 (493)
Q Consensus 369 ~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~------gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 433 (493)
+..-+-.|-..+.+.|++..|...|++..+. +-.+....+..+-.+|.+.|+++.|..++++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344455555566666666666666554332 0112334455555555555555555555555543
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=88.99 E-value=2.7 Score=32.06 Aligned_cols=71 Identities=14% Similarity=0.064 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 011102 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHS------GRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405 (493)
Q Consensus 333 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~ 405 (493)
.+...+-.|-..+.+.|+++.|...|+...+. +-.+....|..|..+|.+.|++++|...+++..+. .|+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~ 79 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEH 79 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 45556667777777888888888877765432 11345667788888888888888888888887653 4553
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=88.01 E-value=4.4 Score=33.69 Aligned_cols=80 Identities=11% Similarity=0.050 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHHcCCHHHHHH
Q 011102 352 GVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK---KCREALTVVWNMEASNCLF-D-LPAYRVVIKLFVALNDISRAIR 426 (493)
Q Consensus 352 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g---~~~~A~~l~~~M~~~gi~p-d-~~ty~~li~~~~~~g~~~~A~~ 426 (493)
..+.+-|.+..+.|. ++..+.-.+--++++.. +.+++..+|++..+.. .| + ...+=.|--+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344444544444333 55555555555666655 4456666666655543 12 1 1122223334466666777776
Q ss_pred HHHHHHH
Q 011102 427 YFSKLKE 433 (493)
Q Consensus 427 ~~~~m~~ 433 (493)
+++.+.+
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666664
No 228
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.89 E-value=16 Score=36.30 Aligned_cols=94 Identities=7% Similarity=0.125 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHH----CCCCCCH--HH
Q 011102 339 TAIMKVGIRLQKFGVVESLFHWFTHS--GRDPT---VVMYTTLIHSRLSEKKCREALTVVWNMEA----SNCLFDL--PA 407 (493)
Q Consensus 339 ~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~M~~----~gi~pd~--~t 407 (493)
..|...|-..|++.+|.+++.++... |.... +..|...++.|...+++.+|..++..... ....|+. .-
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45556666666666666666666432 22111 23455556666666666666666665532 1222221 23
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 408 YRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 408 y~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
|...+..+...+++.+|.+.|.+..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4555555556666666666555544
No 229
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.34 E-value=5.4 Score=30.48 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHH
Q 011102 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK-EAGFCPTYDIYRDMIR 448 (493)
Q Consensus 385 ~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~ty~~li~ 448 (493)
+.-++.+-++.+....+.|+.....+.+.+|.+.+++..|.++|+..+ +.|- ...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 455666666666667777777777777888888888888888877776 3332 2345666654
No 230
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=86.26 E-value=5.6 Score=29.76 Aligned_cols=63 Identities=11% Similarity=-0.063 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 369 TVVMYTTLIHSRLSEKK---CREALTVVWNMEASNCLFD-LPAYRVVIKLFVALNDISRAIRYFSKLKE 433 (493)
Q Consensus 369 ~~~ty~~li~~~~~~g~---~~~A~~l~~~M~~~gi~pd-~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 433 (493)
|...+..+-.++...++ .++|..++++..+. .|+ ......+=..+.+.|++++|...|+.+.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44445555555543333 46666666655442 233 23333333445566666666666666654
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=84.78 E-value=7.6 Score=36.06 Aligned_cols=88 Identities=8% Similarity=-0.051 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHH
Q 011102 352 GVVESLFHWFTHSGRDPT---VVMYTTLIHSRLSE-----KKCREALTVVWNMEASNCLFDLPAYRVVIKLFVAL-NDIS 422 (493)
Q Consensus 352 ~~A~~l~~~m~~~g~~p~---~~ty~~li~~~~~~-----g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~-g~~~ 422 (493)
..|...+++..+. .|+ -..|.+|...|.+. |+.++|.+.|++..+.+-.-+..++...-+.++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3444444444332 454 34566666666663 66777777776665532111245555555666663 6667
Q ss_pred HHHHHHHHHHHCCCC--CCHH
Q 011102 423 RAIRYFSKLKEAGFC--PTYD 441 (493)
Q Consensus 423 ~A~~~~~~m~~~g~~--p~~~ 441 (493)
+|.+++++-...... |+..
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHHHHcCCCCCCCChh
Confidence 777776666655544 5543
No 232
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.49 E-value=4.5 Score=39.47 Aligned_cols=57 Identities=9% Similarity=0.193 Sum_probs=25.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 374 TTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431 (493)
Q Consensus 374 ~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m 431 (493)
..++..+...|+.++|...+..+.... .-+...|..+|.++.+.|+..+|.+.|+..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444455555544444443221 124444555555555555555555444443
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=84.31 E-value=5.1 Score=37.21 Aligned_cols=93 Identities=9% Similarity=-0.116 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CCH
Q 011102 316 MLVMTLLDELGQRDDLNLS---QQDCTAIMKVGIR-----LQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSE-KKC 386 (493)
Q Consensus 316 ~~a~~l~~~m~~~~g~~p~---~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~-g~~ 386 (493)
..|..++++..+ +.|+ -..|+.+...|.+ -|+.++|.+.|++-.+..-.-+..++...-..+++. |+.
T Consensus 180 ~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 455555555544 3455 5578888888888 488899999998877653222477778888888885 888
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHH
Q 011102 387 REALTVVWNMEASNCL--FDLPAYRVV 411 (493)
Q Consensus 387 ~~A~~l~~~M~~~gi~--pd~~ty~~l 411 (493)
++|.+.+++....... |+....|.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999988887666 765544443
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.94 E-value=12 Score=39.67 Aligned_cols=52 Identities=10% Similarity=0.123 Sum_probs=37.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 415 FVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 415 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
|...|+++.|+++-+.-...- .-+..||..|..+|...|+++.|+-.++.+.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 556778888888777765432 1246778888888888888888887777763
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.20 E-value=6 Score=38.56 Aligned_cols=125 Identities=18% Similarity=0.068 Sum_probs=80.7
Q ss_pred cHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhC--C-CCCCHHHHHHHHHHHhcCCCCHHHH-HHHHHHHhhcCCCCCC
Q 011102 262 SKGVLEATAKGFV---KGGNLKLAWKLLMVAKDG--G-RMLDPSIYAKLILELGKNPDKYMLV-MTLLDELGQRDDLNLS 334 (493)
Q Consensus 262 ~~~~~~~li~~~~---~~g~~~~A~~l~~~m~~~--g-~~pd~~t~~~li~~~~~~~~~~~~a-~~l~~~m~~~~g~~p~ 334 (493)
|...|..++..-. ..|+.+.|.+.+++.... | .-++.. . ..|-.. ..-++++..
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~-~~w~~~~r~~l~~~~~------- 171 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------D-FQFVEPFATALVEDKV------- 171 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------T-STTHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------c-hhHHHHHHHHHHHHHH-------
Confidence 3444555554332 357888888888877652 3 111110 0 122211 222222221
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 011102 335 QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA-----SNCLFDLPA 407 (493)
Q Consensus 335 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~-----~gi~pd~~t 407 (493)
.....++..+...|+.++|...+..+.... +-+...|-.+|.+|.+.|+..+|++.|++..+ .|+.|...+
T Consensus 172 -~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 172 -LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 134557778888999999998888876432 45788999999999999999999999988754 499998766
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=81.70 E-value=5.6 Score=31.85 Aligned_cols=23 Identities=4% Similarity=-0.191 Sum_probs=12.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 011102 446 MIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 446 li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
|--++.+.|++++|.+.++.+.+
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 44445555555555555555554
No 237
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=79.37 E-value=17 Score=26.99 Aligned_cols=48 Identities=10% Similarity=-0.014 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 011102 351 FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEAS 399 (493)
Q Consensus 351 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~ 399 (493)
.++|..+|++..+.. +-++.....+-..+.+.|++++|.+.|+++.+.
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455555555544321 223444445555555556666666666555543
No 238
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.73 E-value=15 Score=29.62 Aligned_cols=62 Identities=21% Similarity=0.297 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHH
Q 011102 385 KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK-EAGFCPTYDIYRDMIR 448 (493)
Q Consensus 385 ~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~ty~~li~ 448 (493)
+..+..+-++.+....+.|+.....+.+.+|-+.+++..|.++|+..+ +.| +...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 445566666666677778888888888888888888888888888877 333 33456776665
No 239
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.42 E-value=8.3 Score=31.17 Aligned_cols=64 Identities=13% Similarity=0.045 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHh
Q 011102 420 DISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQTVVELLQI 484 (493)
Q Consensus 420 ~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~Ll~~ 484 (493)
+.-+..+-++.+....+.|+.....+.+++|-|.+++..|.++|+-.+.+ +.+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 45567778888889999999999999999999999999999999998754 45556688888873
No 240
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=77.81 E-value=53 Score=31.84 Aligned_cols=166 Identities=10% Similarity=-0.001 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh----cCCCCCCHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDG-GRML---DPSIYAKLILELGKNPDKYMLVMTLLDELGQ----RDDLNLSQQ 336 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p---d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~----~~g~~p~~~ 336 (493)
....|...|.+.|+.++..+++.....- +..| .......+|+.+...++..+.-.++..+..+ ....-....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777778877777777655321 1111 2234567777777766665555555544432 100000111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHHHH
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDP-----TVVMYTTLIHSRLSEKKCREALTVVWNMEAS--NCLFDLPAYR 409 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~--gi~pd~~ty~ 409 (493)
.=.-+..-|...|++.+|.+++.++.+.--.. -+..|-.-++.|...+++.++...+...... .+.++...-
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~- 179 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ- 179 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH-
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH-
Confidence 22356777788888888888877776531111 1244566667777788888888777766532 232333322
Q ss_pred HHHHH-----HH-HcCCHHHHHHHHHHH
Q 011102 410 VVIKL-----FV-ALNDISRAIRYFSKL 431 (493)
Q Consensus 410 ~li~~-----~~-~~g~~~~A~~~~~~m 431 (493)
+.|.. +. ..+++..|...|-+-
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 22222 33 567777777666544
No 241
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=76.22 E-value=4.4 Score=38.95 Aligned_cols=214 Identities=12% Similarity=0.069 Sum_probs=109.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLIL-ELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMK 343 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~-~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~ 343 (493)
...++|.-|...|+.++|...++++......| .....+|. ++-+....-+.+-.++..+.. ++-+.......+..
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~--~~v~~~I~~aLdr~~~erE~~s~LLs~L~~--~~ls~~~i~~gf~~ 131 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKS--GVPVLAVSLALEGKASHREMTSKLLSDLCG--TVMSTNDVEKSFDK 131 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCGGGG--GHHHHHHHHHTTSCHHHHHHHHHHHHTTTT--TSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCchhHH--HHHHHHHHHHhcCChHHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 45788999999999999999999876533322 22223333 333331233445556666552 44444444444443
Q ss_pred HHHHcCCH----HHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHH------HHH---H--CCCC
Q 011102 344 VGIRLQKF----GVVESLFHWF----THSGRDPTVVMYTTLIHSRLSEK--KCREALTVVW------NME---A--SNCL 402 (493)
Q Consensus 344 ~~~~~g~~----~~A~~l~~~m----~~~g~~p~~~ty~~li~~~~~~g--~~~~A~~l~~------~M~---~--~gi~ 402 (493)
.+....++ -.|..++..+ ...++-|-.......-..-+..| -++.|..++. .+. . .|..
T Consensus 132 lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~ 211 (358)
T 3eiq_C 132 LLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQ 211 (358)
T ss_dssp HHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCCCCSSS
T ss_pred HHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCCc
Confidence 33333321 1233333322 22232221111110000000000 0112222211 000 0 1223
Q ss_pred CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCccCHHH
Q 011102 403 FD---LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR--LAKCRDVCKEAEMAGFKLDKQT 477 (493)
Q Consensus 403 pd---~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~t 477 (493)
|. ....+.+|.=|...|+.++|.+.++++....+.+ ...+.++..++-+.++ .+...+++..+.+.|+-+....
T Consensus 212 ~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 212 PVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 32 2346888999999999999999999997433332 4446677777766543 4568888888888887665555
Q ss_pred HHHHHH
Q 011102 478 VVELLQ 483 (493)
Q Consensus 478 ~~~Ll~ 483 (493)
...+.+
T Consensus 291 ~~Gf~~ 296 (358)
T 3eiq_C 291 KRGYER 296 (358)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=76.12 E-value=25 Score=29.11 Aligned_cols=54 Identities=7% Similarity=0.060 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 011102 349 QKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF 403 (493)
Q Consensus 349 g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~p 403 (493)
+++++|.++|+.+...+-+- ...|-.--+--.+.|++.+|.+++......+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 66777777777775542222 5556655566666777777777777777666555
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=74.63 E-value=26 Score=26.74 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011102 314 KYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHS 364 (493)
Q Consensus 314 ~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 364 (493)
+.-++.+-+..+-.. .+-|++....+.+.+|.|.+++..|.++|+.++.+
T Consensus 25 D~~e~rrglN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 444455555555544 56666666666666766666666666666666543
No 244
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=72.72 E-value=27 Score=27.86 Aligned_cols=83 Identities=10% Similarity=0.075 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHHHHCCCCC-CHHHH-HHHHHHHHHcCCHHHH
Q 011102 350 KFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE---ALTVVWNMEASNCLF-DLPAY-RVVIKLFVALNDISRA 424 (493)
Q Consensus 350 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~---A~~l~~~M~~~gi~p-d~~ty-~~li~~~~~~g~~~~A 424 (493)
.+..+.+-|.+-...|. ++..+--.+-.++.+..+..+ +..++++....+ .| +..-| =.|--|+.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34455555555544443 666666666667777766554 777777766653 12 12222 2333567788888888
Q ss_pred HHHHHHHHHC
Q 011102 425 IRYFSKLKEA 434 (493)
Q Consensus 425 ~~~~~~m~~~ 434 (493)
.++++.+.+.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888887753
No 245
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=72.30 E-value=3.2 Score=36.67 Aligned_cols=187 Identities=16% Similarity=0.067 Sum_probs=92.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHH--HHHHHHH
Q 011102 269 TAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI--YAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQD--CTAIMKV 344 (493)
Q Consensus 269 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~--~~~li~~ 344 (493)
.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+.. |..+-+..+++ . |..++... -.+.+..
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~----~-g~~~~~~~~~g~t~l~~ 85 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT-TLPSVVRLLVT----A-GASPMALDRHGQTAAHL 85 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHH----T-TCCTTCCCTTSCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHc-CCHHHHHHHHH----c-CCCccccCCCCCCHHHH
Confidence 45556777888888888887777776554321 11233444445 66554444433 3 33333211 1233444
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHc
Q 011102 345 GIRLQKFGVVESLFHWFTHSGRDP---TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPA---YRVVIKLFVAL 418 (493)
Q Consensus 345 ~~~~g~~~~A~~l~~~m~~~g~~p---~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~t---y~~li~~~~~~ 418 (493)
.++.|+.+-+..+++.....++.+ |...++. +...++.|+.+ +++.+.+.|..++... -.+.+...++.
T Consensus 86 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~ 160 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQE----TVQLLLERGADIDAVDIKSGRSPLIHAVEN 160 (241)
T ss_dssp HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHH----HHHHHHHcCCCcccccccCCCcHHHHHHHc
Confidence 556777766655555432111122 2222233 33334455544 4444445565554322 33455556677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCccC
Q 011102 419 NDISRAIRYFSKLKEAGFCPTYDIY--RDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474 (493)
Q Consensus 419 g~~~~A~~~~~~m~~~g~~p~~~ty--~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 474 (493)
|+.+-+.. +.+.|..++.... .+.+...++.|+.+ +++.+.+.|..|+
T Consensus 161 ~~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 161 NSLSMVQL----LLQHGANVNAQMYSGSSALHSASGRGLLP----LVRTLVRSGADSS 210 (241)
T ss_dssp TCHHHHHH----HHHTTCCTTCBCTTSCBHHHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred CCHHHHHH----HHHcCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHhcCCCCC
Confidence 77664444 4455655543211 12334445667655 3444455666554
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=70.84 E-value=24 Score=37.51 Aligned_cols=128 Identities=13% Similarity=0.136 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHhcCCCCHHHHHHHHHHHhhc-----CCCCC-CH
Q 011102 265 VLEATAKGFVKGGN-LKLAWKLLMVAKDGGRMLDPSI--YAKLILELGKNPDKYMLVMTLLDELGQR-----DDLNL-SQ 335 (493)
Q Consensus 265 ~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~t--~~~li~~~~~~~~~~~~a~~l~~~m~~~-----~g~~p-~~ 335 (493)
.-.+|+..+...|+ .+.|.++|+++.+.. |...+ ...+|..+.+...+--+|.+++.+..+. ....+ +.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 34556666665666 688999999988864 43332 2344444444422334555555544321 01111 11
Q ss_pred H-----HH-HHHH----HHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011102 336 Q-----DC-TAIM----KVGIRLQKFGVVESLFHWFTHSGRDP-TVVMYTTLIHSRLSEKKCREALTVVWNM 396 (493)
Q Consensus 336 ~-----~~-~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M 396 (493)
. .+ ..|+ +-+...|+++.|+++-++-... .| +-.+|-.|..+|...|+++.|+=.++.+
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1 11 1233 3455689999999999887643 55 4789999999999999999999998887
No 247
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=70.65 E-value=39 Score=27.94 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHH
Q 011102 419 NDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQ 476 (493)
Q Consensus 419 g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 476 (493)
+++++|.++|+.+.+.+-+- ...|-...+--.+.|++..|.+++......+-+|...
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 67788888888876433332 5566655555667888888888888888777665443
No 248
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.83 E-value=24 Score=26.82 Aligned_cols=51 Identities=16% Similarity=0.087 Sum_probs=24.3
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 011102 379 SRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435 (493)
Q Consensus 379 ~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g 435 (493)
.+...|++++|..+.+.+ +.||...|-+|-. .|.|..+++...+.+|..+|
T Consensus 49 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 444555555555554432 2455555544422 34455555555554444433
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=67.21 E-value=50 Score=37.09 Aligned_cols=189 Identities=7% Similarity=-0.060 Sum_probs=111.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCC---------------
Q 011102 269 TAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNL--------------- 333 (493)
Q Consensus 269 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p--------------- 333 (493)
++..+.+.+..+.|.++..... -++..--.+-.+|... |++++|.+.|.+... |+..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~-ge~~~A~~~F~kaa~--~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKS-KEAVKAVRCFKTTSL--VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHT-TCHHHHHHHHHTCCC--SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhc-CCHHHHHHHHHHHhh--hhcccchhhhhhccccccc
Confidence 3444445555555554443221 2333222223456677 999999999987532 1211
Q ss_pred --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC-CH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 011102 334 --------SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSG-RDP-TV--VMYTTLIHSRLSEKKCREALTVVWNMEASNC 401 (493)
Q Consensus 334 --------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p-~~--~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi 401 (493)
-..-|.-++.-+-+.|.++.+.++-..-.+.. -.. +. ..|..+.+++...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 12236677788888888888887766544322 222 21 2588899999999999999999988876554
Q ss_pred CCCHHHHHHHHHHHHHcCCHH------------HHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHH
Q 011102 402 LFDLPAYRVVIKLFVALNDIS------------RAIRYFSKLKEAG--FCPTYDIYRDMIRIFMASGRLAKCRDV-CKEA 466 (493)
Q Consensus 402 ~pd~~ty~~li~~~~~~g~~~------------~A~~~~~~m~~~g--~~p~~~ty~~li~~~~~~g~~~~A~~l-~~~m 466 (493)
+ ......||..+|..|.++ +..+++....... +.....-|..|-.-+...|++.+|-.+ |+..
T Consensus 970 r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 970 K--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp C--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 3 455677777777776654 3444443322111 111112356666666778887776554 4444
Q ss_pred H
Q 011102 467 E 467 (493)
Q Consensus 467 ~ 467 (493)
.
T Consensus 1048 ~ 1048 (1139)
T 4fhn_B 1048 S 1048 (1139)
T ss_dssp H
T ss_pred H
Confidence 3
No 250
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=66.45 E-value=19 Score=27.37 Aligned_cols=79 Identities=5% Similarity=-0.105 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 011102 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392 (493)
Q Consensus 313 ~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 392 (493)
...++|..+-+.+... +. ...+--+-+..+...|++++|..+.+.+. .||...|-+|-. .+.|..+++..-
T Consensus 21 H~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 21 HYHEEANCIAEWLHLK-GE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp TCHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 3567777776666655 22 22222233455667777777777766554 777777776644 455666666666
Q ss_pred HHHHHHCC
Q 011102 393 VWNMEASN 400 (493)
Q Consensus 393 ~~~M~~~g 400 (493)
+.++...|
T Consensus 92 L~~la~sg 99 (116)
T 2p58_C 92 LNRLARSQ 99 (116)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 66665554
No 251
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=65.99 E-value=23 Score=26.88 Aligned_cols=51 Identities=16% Similarity=0.051 Sum_probs=23.6
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 011102 379 SRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAG 435 (493)
Q Consensus 379 ~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g 435 (493)
.+...|++++|..+.+.+ +.||...|-+|-. .|.|..+++...+.+|..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344455555555544332 2455555444422 34455555555444444333
No 252
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.11 E-value=57 Score=31.93 Aligned_cols=58 Identities=3% Similarity=-0.134 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011102 339 TAIMKVGIRLQKFGVVESLFHWFTHSG--RDPTVVMYTTLIHSRLSEKKCREALTVVWNM 396 (493)
Q Consensus 339 ~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M 396 (493)
..+-.-|.+.|+++.|.+.|.++...- ..--+..|-.+|..+...+++..|...+.+.
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344445555555555555555554321 1122334444455555555555555555444
No 253
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=63.27 E-value=19 Score=27.40 Aligned_cols=86 Identities=7% Similarity=-0.073 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 011102 313 DKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTV 392 (493)
Q Consensus 313 ~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 392 (493)
...++|..+-+.+... +. ...+--+-+..+...|++++|..+.+.+. .||...|-+|-. .+.|..+++..-
T Consensus 20 H~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 20 HCHEEALCIAEWLERL-GQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp TCHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 3566777776666655 22 22222233455667777777777666554 677777776644 466666777666
Q ss_pred HHHHHHCCCCCCHHHH
Q 011102 393 VWNMEASNCLFDLPAY 408 (493)
Q Consensus 393 ~~~M~~~gi~pd~~ty 408 (493)
+.++...|- |....|
T Consensus 91 L~~la~sg~-p~~q~F 105 (115)
T 2uwj_G 91 LAGLGGSSD-PALADF 105 (115)
T ss_dssp HHHHHTCSS-HHHHHH
T ss_pred HHHHHhCCC-HHHHHH
Confidence 666665543 333333
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.91 E-value=58 Score=31.91 Aligned_cols=96 Identities=9% Similarity=-0.030 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HCCCCCCHH----
Q 011102 371 VMYTTLIHSRLSEKKCREALTVVWNMEAS--NCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK---EAGFCPTYD---- 441 (493)
Q Consensus 371 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~--gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~---- 441 (493)
.++..+-.-|.+.|+.++|.+.+.++... +..--...+-.+|..+...+++..|...+++.. ..+-.|+..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35677889999999999999999999875 333335678889999999999999999998876 333333332
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 442 IYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 442 ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
.|..++ +...+++.+|.+.|-+...
T Consensus 212 ~~~gl~--~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIH--CLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHG--GGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHhChHHHHHHHHHHHhc
Confidence 222222 3457899999998888754
No 255
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=59.76 E-value=7 Score=35.23 Aligned_cols=214 Identities=7% Similarity=-0.050 Sum_probs=94.0
Q ss_pred HHHHHHHHcCCCchhhhHHHhhccCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhc
Q 011102 237 STVEVLARHHELKVPFKLENFVSLAS---KGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPS---IYAKLILELGK 310 (493)
Q Consensus 237 ~li~~~~~~g~~~~~~~l~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---t~~~li~~~~~ 310 (493)
+.+...++.|+++..+.+.......+ ...-.+.+...++.|+.+- ++.+.+.|..++.. -.+. +...+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~-L~~A~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADPVLRKKNGATP-FLLAAI 81 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCH-HHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCCH-HHHHHH
Confidence 44555566676655555433221111 1111234555556666543 34444455544322 1222 222333
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH------------HHH
Q 011102 311 NPDKYMLVMTLLDELGQRDDLNLSQ---QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVM------------YTT 375 (493)
Q Consensus 311 ~~~~~~~a~~l~~~m~~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t------------y~~ 375 (493)
. |..+-+..++ +. |..++. ..++ .+...++.|+.+ +++.+.+.|..++... -.+
T Consensus 82 ~-~~~~~v~~Ll----~~-g~~~~~~~~~g~t-~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t 150 (285)
T 1wdy_A 82 A-GSVKLLKLFL----SK-GADVNECDFYGFT-AFMEAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGAT 150 (285)
T ss_dssp H-TCHHHHHHHH----HT-TCCTTCBCTTCCB-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC
T ss_pred c-CCHHHHHHHH----Hc-CCCCCccCcccCC-HHHHHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCc
Confidence 3 4444333333 33 333332 2222 333445556644 4444455565554321 113
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHH
Q 011102 376 LIHSRLSEKKCREALTVVWNMEASNCLFDL---PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI--YRDMIRIF 450 (493)
Q Consensus 376 li~~~~~~g~~~~A~~l~~~M~~~gi~pd~---~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--y~~li~~~ 450 (493)
.+...++.|+.+-+..+++. .|..++. .-.+. +...+..|......++++.+.+.|..++... -.+.+...
T Consensus 151 ~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A 226 (285)
T 1wdy_A 151 ALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNA-LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 226 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCH-HHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCH-HHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 34444455665444443332 1444332 22223 3333445555555566666777776655432 12344445
Q ss_pred HHcCCHHHHHHHHHHHHH-CCCccC
Q 011102 451 MASGRLAKCRDVCKEAEM-AGFKLD 474 (493)
Q Consensus 451 ~~~g~~~~A~~l~~~m~~-~g~~pd 474 (493)
++.|+.+-+.. +.+ .|..++
T Consensus 227 ~~~~~~~~v~~----Ll~~~g~~~~ 247 (285)
T 1wdy_A 227 VEKKHLGLVQR----LLEQEHIEIN 247 (285)
T ss_dssp HHTTCHHHHHH----HHHSSSCCTT
T ss_pred HHcCCHHHHHH----HHhccCCCcc
Confidence 56666654333 333 455554
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=59.72 E-value=1.7e+02 Score=32.65 Aligned_cols=182 Identities=9% Similarity=-0.001 Sum_probs=111.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------------------CHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 011102 268 ATAKGFVKGGNLKLAWKLLMVAKDGGRML-----------------------DPSIYAKLILELGKNPDKYMLVMTLLDE 324 (493)
Q Consensus 268 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------------------d~~t~~~li~~~~~~~~~~~~a~~l~~~ 324 (493)
.+-..|...|++++|.+.|++... |+.. -..=|..++.-+-+. +.++.+.++-..
T Consensus 847 l~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~-~~~~~vi~fa~l 924 (1139)
T 4fhn_B 847 LKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEE-SAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHT-SCCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 344567789999999999976421 2111 112256777788888 888888877665
Q ss_pred HhhcCCCCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH------------H
Q 011102 325 LGQRDDLNL-S--QQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCRE------------A 389 (493)
Q Consensus 325 m~~~~g~~p-~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~------------A 389 (493)
..+..+-.. + ...|+.+.+++...|++++|...+-.+.....+ ......||..+|..|+.++ .
T Consensus 925 Ai~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~V 1002 (1139)
T 4fhn_B 925 ADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDV 1002 (1139)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHH
T ss_pred HHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHH
Confidence 544312111 1 226889999999999999999999888765443 4567788888887776553 4
Q ss_pred HHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHC----CCC------CCHHHHHHHHHHHHHc
Q 011102 390 LTVVWNMEASN--CLFDLPAYRVVIKLFVALNDISRAIRY-FSKLKEA----GFC------PTYDIYRDMIRIFMAS 453 (493)
Q Consensus 390 ~~l~~~M~~~g--i~pd~~ty~~li~~~~~~g~~~~A~~~-~~~m~~~----g~~------p~~~ty~~li~~~~~~ 453 (493)
.+++..-.+.. ......-|..|-.-+...|++..|-.+ |+..... ... .-...|-++|+++.-.
T Consensus 1003 d~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~~~~~~~~~~~~~~q~~~yL~~INaLslv 1079 (1139)
T 4fhn_B 1003 DNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRYISTTELIGKKERTFIIEHYLIVLNTLELL 1079 (1139)
T ss_dssp HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhcC
Confidence 44443322110 111112356666667778887666554 3333211 111 1135677888887655
No 257
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=58.89 E-value=43 Score=26.66 Aligned_cols=65 Identities=11% Similarity=0.139 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCC
Q 011102 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALND--ISRAIRYFSKLKEAGFC 437 (493)
Q Consensus 372 ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 437 (493)
..+.+|.-|...|+.++|.+.++++..-... ....+.++..++-+.++ .+.+..++..+.+.|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3466777777778888888887777532111 23344555555555432 35566777777666655
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=58.46 E-value=1.2e+02 Score=28.28 Aligned_cols=133 Identities=14% Similarity=0.039 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCC----CCHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHcCCHHHHH
Q 011102 281 LAWKLLMVAKDGGRMLDPSIYAKLILELGKNP----DKYMLVMTLLDELGQRDD-LNLSQQDCTAIMKVGIRLQKFGVVE 355 (493)
Q Consensus 281 ~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~----~~~~~a~~l~~~m~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~ 355 (493)
-|.-+.+...+.++++|......++..+...+ .+.+-..+...+-.+.++ -.-|......+-..|.+.|++.+|+
T Consensus 75 La~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~ 154 (312)
T 2wpv_A 75 LIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAE 154 (312)
T ss_dssp HHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHH
Confidence 34445566666778888877777777765532 122223333333333322 2346777888889999999999998
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSE---KKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 356 ~l~~~m~~~g~~p~~~ty~~li~~~~~~---g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
..|- .|-.-|...|..++.-+... |...++ |...-.++|. |.-.|++..|..+|+...
T Consensus 155 ~H~i----~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 155 RYFM----LGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHH----TSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHH
T ss_pred HHHH----hCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHH
Confidence 8775 11111344455444444333 333222 2222233333 345678888888888765
No 259
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=57.98 E-value=22 Score=33.24 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCccCHHH
Q 011102 407 AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGR--LAKCRDVCKEAEMAGFKLDKQT 477 (493)
Q Consensus 407 ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~t 477 (493)
..+.+|.-|...|+.++|.+.++++....+. ....+.++..++-+.++ .+...+++..+.+.|+-+....
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 3567888888899999999999998633222 23455666666666543 4556778888887776554444
No 260
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=56.61 E-value=1.3e+02 Score=28.07 Aligned_cols=162 Identities=10% Similarity=0.063 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011102 278 NLKLAWKLLMVAKDGGRMLD-PSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVES 356 (493)
Q Consensus 278 ~~~~A~~l~~~m~~~g~~pd-~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 356 (493)
.+++.+.-++.-.+.|---. -.+|.++..-|.+. +++++|.+++..--. .+.+.|+...|-+
T Consensus 12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~-~~~~eAidlL~~ga~----------------~ll~~~Q~~sa~D 74 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRS-KSYEHAIELISQGAL----------------SFLKAKQGGSGTD 74 (312)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH----------------HHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHH----------------HHHHCCCcchHHH
Confidence 35555555555555542111 12556666666666 666666666544322 2345566554444
Q ss_pred ----HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHHcCCHHHHH
Q 011102 357 ----LFHWFTHSGRDPTVVMYTTLIHSRLSEKKCR-EALTVVWNME----ASN--CLFDLPAYRVVIKLFVALNDISRAI 425 (493)
Q Consensus 357 ----l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~-~A~~l~~~M~----~~g--i~pd~~ty~~li~~~~~~g~~~~A~ 425 (493)
+.+-..+.+.++|..+-.-|+.-+..-..-+ .=.++++++. +.| -.-|......+-..|.+.|++.+|.
T Consensus 75 La~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~ 154 (312)
T 2wpv_A 75 LIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAE 154 (312)
T ss_dssp HHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHH
Confidence 4566667788888888777777766643211 2244455543 222 2235566777777788888888877
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHHHHH
Q 011102 426 RYFSKLKEAGFCPTYDIYRDMIRIFMAS---GRLAKCR 460 (493)
Q Consensus 426 ~~~~~m~~~g~~p~~~ty~~li~~~~~~---g~~~~A~ 460 (493)
..| . .|-.-|...|..++.-+... |...++-
T Consensus 155 ~H~---i-~~~~~s~~~~a~~l~~w~~~~~~~~~~e~d 188 (312)
T 2wpv_A 155 RYF---M-LGTHDSMIKYVDLLWDWLCQVDDIEDSTVA 188 (312)
T ss_dssp HHH---H-TSCHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHH---H-hCCCccHHHHHHHHHHHHHhcCCCCcchHH
Confidence 655 3 22212455666555555555 6655543
No 261
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=54.03 E-value=11 Score=32.99 Aligned_cols=18 Identities=11% Similarity=0.117 Sum_probs=8.7
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 011102 270 AKGFVKGGNLKLAWKLLM 287 (493)
Q Consensus 270 i~~~~~~g~~~~A~~l~~ 287 (493)
+...++.|+++....+++
T Consensus 10 l~~A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 10 ICNLAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 334444555555554444
No 262
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=50.54 E-value=1e+02 Score=25.99 Aligned_cols=113 Identities=5% Similarity=0.062 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 352 GVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL 431 (493)
Q Consensus 352 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m 431 (493)
+.+..+++.+.+.|..-|..--.+.+....+.|.+ ....+-.++.++||..+. ....+..+......+.|..+.+.-
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~~~~--I~~al~~~~~~de~e~a~~l~~Kk 126 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGIDDNI--AEDALILYTDKLQVEKGVTLAEKL 126 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCCHHH--HHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCCHHH--HHHHHHhCCchhHHHHHHHHHHHH
Confidence 44556666666666665555555556655544332 234555666777774332 222222221112234455554443
Q ss_pred H-HCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 011102 432 K-EAGFCPTYDIYRDMIRIFMASG-RLAKCRDVCKEAE 467 (493)
Q Consensus 432 ~-~~g~~p~~~ty~~li~~~~~~g-~~~~A~~l~~~m~ 467 (493)
. ...-.++.....-++..+.+.| .++.+..+++++.
T Consensus 127 ~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 127 ANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 2 2111222333445555566666 3444555555543
No 263
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix BUN heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Probab=50.49 E-value=1.6e+02 Score=27.32 Aligned_cols=192 Identities=15% Similarity=0.097 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcC-CCCHHHHHHHHHHHhhcCCCCCC-----HHHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKN-PDKYMLVMTLLDELGQRDDLNLS-----QQDC 338 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~-~~~~~~a~~l~~~m~~~~g~~p~-----~~~~ 338 (493)
-|..++-++...--...|..+.+.|+..| .|..+. |..+|.. +.++....+.|..+-.+ .+.-+ ...|
T Consensus 63 ~fe~~l~~l~~~~~~~DA~~L~~AmkG~G--tde~~L---ieIL~~Rs~~q~~~Ik~aY~~~y~~-~L~~di~se~sG~f 136 (308)
T 2hyv_A 63 HLETVILGLLKTPAQYDASELKASMKGLG--TDEDSL---IEIICSRTNQELQEINRVYKEMYKT-DLEKDIISDTSGDF 136 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHTSTTC--CCHHHH---HHHHHHCCHHHHHHHHHHHHHHHSS-CHHHHHHHTCCHHH
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHhhcCC--CCHHHH---HHHHhcCCHHHHHHHHHHHHHhhCC-CHHHHHhhccCccH
Confidence 45555666665544566777777776655 566554 4433332 23445555555554332 11111 1246
Q ss_pred HHHHHHHHHcCC------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC---
Q 011102 339 TAIMKVGIRLQK------------FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF--- 403 (493)
Q Consensus 339 ~~li~~~~~~g~------------~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~p--- 403 (493)
-.++-++....+ -.+|..+++.+.. +.-.|..++..++..- ...++....+.|+++-...+.-
T Consensus 137 ~~ll~~l~~~~r~~e~~~vd~~~a~~DA~~L~~A~~~-~~Gtde~~li~Il~~R-S~~~L~~i~~~Y~~~~g~~Le~~I~ 214 (308)
T 2hyv_A 137 RKLMVALAKGRRAEDGSVIDYELIDQDARDLYDAGVK-RKGTDVPKWISIMTER-SVPHLQKVFDRYKSYSPYDMLESIR 214 (308)
T ss_dssp HHHHHHHHTCCCCCCCSSCCHHHHHHHHHHHHHTTTT-SSSCCHHHHHHHHHHS-CHHHHHHHHHHHTTTCSSCHHHHHH
T ss_pred HHHHHHHHccccccccCCCCccHHHHHHHHHHHHhhc-cCCCcHHHHHHHHHhC-CHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 667777776655 4466666666432 2335655544444321 1112333333333322111111
Q ss_pred ---CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 404 ---DL---PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 404 ---d~---~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
.- ..+.+++.+. +......|..+++.|...| .|..++..++-.- ..-+.....+-|+++-.
T Consensus 215 ~e~sG~~~~~L~~lv~~~-~~~~~~~A~~L~~A~~g~G--Tde~~lirilv~R-s~~~l~~I~~~Y~~~yg 281 (308)
T 2hyv_A 215 KEVKGDLENAFLNLVQCI-QNKPLYFADRLYDSMKGKG--TRDKVLIRIMVSR-SEVDMLKIRSEFKRKYG 281 (308)
T ss_dssp HHCCHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHSSSS--CCHHHHHHHHHHH-TTTTHHHHHHHHHHHHS
T ss_pred HhcCchHHHHHHHHHhcc-CCCcHHHHHHHHHHhccCC--CCHHHHHHHHHhc-CHHHHHHHHHHHHHHhC
Confidence 11 1222333322 2222335888888887544 4665555444321 22356666666666543
No 264
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=50.33 E-value=40 Score=27.75 Aligned_cols=67 Identities=10% Similarity=0.132 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCC
Q 011102 372 MYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALND--ISRAIRYFSKLKEAGFCPT 439 (493)
Q Consensus 372 ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 439 (493)
..+.+|.-|...|+.++|.+.++++..-... ....+.++..++-+.++ .+.+..++..+.+.|+.+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567888888888888888888887532111 23445556666665432 4566777777777666543
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=50.22 E-value=56 Score=29.77 Aligned_cols=54 Identities=20% Similarity=0.167 Sum_probs=32.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 378 HSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 378 ~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
..+.+.|++++|++...+-.+.. .-|...=..++.-+|-.|+++.|.+-++...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34556667777776666554432 2344555566667777777777766666554
No 266
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=49.55 E-value=62 Score=27.09 Aligned_cols=69 Identities=12% Similarity=-0.073 Sum_probs=36.8
Q ss_pred CCCCCCHHHHH--HHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 292 GGRMLDPSIYA--KLILELGKNPDKYMLVMTLLDELGQRDDLNLSQ-------QDCTAIMKVGIRLQKFGVVESLFHWF 361 (493)
Q Consensus 292 ~g~~pd~~t~~--~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~l~~~m 361 (493)
.|+.|....|+ .-+..+... +.++.|+-+.+.+....+..++. .++..+-+++...|++.+|...|++-
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~-~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAA-GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp ---------CCHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34455444433 335556666 77777777666543322223331 24556667888888888888888774
No 267
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=47.85 E-value=1.1e+02 Score=24.60 Aligned_cols=73 Identities=3% Similarity=-0.059 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCHHH
Q 011102 403 FDLPAYRVVIKLFVALND---ISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDKQT 477 (493)
Q Consensus 403 pd~~ty~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 477 (493)
|+..|--..--++.+..+ ..++..+++++...+-.-....+-.|.-|+.+.|++++|.+..+.+.+ +.|+-.-
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~Q 113 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 113 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCHH
Confidence 444443333344444443 345666777666544211344455566677777777777777777765 4554433
No 268
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=47.44 E-value=1.3e+02 Score=25.40 Aligned_cols=17 Identities=6% Similarity=-0.369 Sum_probs=6.8
Q ss_pred CHHHHHHHHHHHHHcCC
Q 011102 334 SQQDCTAIMKVGIRLQK 350 (493)
Q Consensus 334 ~~~~~~~li~~~~~~g~ 350 (493)
+..+-...+.++++.|.
T Consensus 125 ~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 33333334444444443
No 269
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=45.43 E-value=15 Score=32.01 Aligned_cols=157 Identities=10% Similarity=-0.011 Sum_probs=81.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHH
Q 011102 304 LILELGKNPDKYMLVMTLLDELGQRDDLNLSQQD--CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMY--TTLIHS 379 (493)
Q Consensus 304 li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty--~~li~~ 379 (493)
.+...++. |+.+.+..+++.+.+. +..++... ..+.+...+..|+.+ +++.+.+.|..++.... .+.+..
T Consensus 12 ~L~~A~~~-g~~~~v~~Ll~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~ 85 (241)
T 1k1a_A 12 PLHIAVVQ-GNLPAVHRLVNLFQQG-GRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHL 85 (241)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHhc-CCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHH
Confidence 34455566 8888888888766554 44443221 123445556677765 44555567766654321 234455
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcC
Q 011102 380 RLSEKKCREALTVVWNMEASNCLFDLP--AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI---YRDMIRIFMASG 454 (493)
Q Consensus 380 ~~~~g~~~~A~~l~~~M~~~gi~pd~~--ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---y~~li~~~~~~g 454 (493)
.+..|+.+-+..+++.....++.++.. .-.+.+...+..|+.+- ++.+.+.|..++... -.+.+...++.|
T Consensus 86 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET----VQLLLERGADIDAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHH----HHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHH----HHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence 567788777666666543222222211 11233444456677554 444455565554322 223444556777
Q ss_pred CHHHHHHHHHHHHHCCCccC
Q 011102 455 RLAKCRDVCKEAEMAGFKLD 474 (493)
Q Consensus 455 ~~~~A~~l~~~m~~~g~~pd 474 (493)
+.+-+. .+.+.|..++
T Consensus 162 ~~~~v~----~Ll~~g~~~~ 177 (241)
T 1k1a_A 162 SLSMVQ----LLLQHGANVN 177 (241)
T ss_dssp CHHHHH----HHHHTTCCTT
T ss_pred CHHHHH----HHHHcCCCCC
Confidence 765444 4445565543
No 270
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=45.01 E-value=90 Score=26.08 Aligned_cols=127 Identities=7% Similarity=-0.015 Sum_probs=62.3
Q ss_pred CCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 011102 330 DLNLSQQDCTA--IMKVGIRLQKFGVVESLFHWFTHS-GRDPTV-------VMYTTLIHSRLSEKKCREALTVVWNMEAS 399 (493)
Q Consensus 330 g~~p~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-------~ty~~li~~~~~~g~~~~A~~l~~~M~~~ 399 (493)
|+.|....|+. -+..+...|.++.|+-+.+.+... +..|++ .++..+-+++...|++..|...|++..+.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 44454444433 366777788888888777765432 223442 34566677888888888888888875332
Q ss_pred -CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 400 -NCLFDLP-AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMA 469 (493)
Q Consensus 400 -gi~pd~~-ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 469 (493)
...+... +++.+ ........ ......+...---+-.+|.+.|++++|+.+++.+..+
T Consensus 93 ~k~l~k~~s~~~~~----~~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 93 KKALSKTSKVRPST----GNSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHhcCCCccccc----cccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1112111 11111 00000000 0011122233233667788889999998887775443
No 271
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=44.72 E-value=1.3e+02 Score=26.71 Aligned_cols=90 Identities=8% Similarity=0.086 Sum_probs=51.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--cCCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011102 340 AIMKVGIRLQKFGVVESLFHWFTH--SGRDP----TVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIK 413 (493)
Q Consensus 340 ~li~~~~~~g~~~~A~~l~~~m~~--~g~~p----~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~ 413 (493)
--++.+....++++|.++.++.++ .+.++ +...-...|..-.....-.-+..+.+++.. .++...-...+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 347788888888888888887653 22222 111122233333333333444455555522 445566666677
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 011102 414 LFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 414 ~~~~~g~~~~A~~~~~~m~ 432 (493)
.+.+.|+-++|.++|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 7777888888887776654
No 272
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=43.53 E-value=4 Score=36.69 Aligned_cols=191 Identities=11% Similarity=0.008 Sum_probs=94.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHh--cCCCCHHHHHHHHHHHhhcC--------CC
Q 011102 269 TAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSI-------YAKLILELG--KNPDKYMLVMTLLDELGQRD--------DL 331 (493)
Q Consensus 269 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-------~~~li~~~~--~~~~~~~~a~~l~~~m~~~~--------g~ 331 (493)
.+...++.|+.+....+++.+.+.|..++... ++.|..+.. +. |..+-+..+++.-.... .+
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 86 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSA-GRNDTIPILLDIAEKTGNMREFINSPF 86 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBT-TBCTHHHHHHHHHHHTTCHHHHHTCCB
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhc-CCHHHHHHHHHhcccccchHhhhcccc
Confidence 34455667778877777777777776655333 244544442 45 66666666666532210 00
Q ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH----------------HHHHHHHHHcCCCHHHHHHHHH
Q 011102 332 N-LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVM----------------YTTLIHSRLSEKKCREALTVVW 394 (493)
Q Consensus 332 ~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----------------y~~li~~~~~~g~~~~A~~l~~ 394 (493)
. .|..-+ +.+...+..|+.+-+ +.+.+.|..++... -.+.+...+..|+.+-+.-+++
T Consensus 87 ~~~d~~g~-t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 87 RDVYYRGQ-TALHIAIERRCKHYV----ELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp CCSSEESB-CHHHHHHHTTCHHHH----HHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccCCC-CHHHHHHHcCCHHHH----HHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 0 011112 234445566776644 44455677766543 2244445566677554444433
Q ss_pred HHHHCCCCCCH---HHHHHHHHHHHHcCC-----HHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHHcCCH
Q 011102 395 NMEASNCLFDL---PAYRVVIKLFVALND-----ISRAIRYFSKLKEAGFCP----------TYDIYRDMIRIFMASGRL 456 (493)
Q Consensus 395 ~M~~~gi~pd~---~ty~~li~~~~~~g~-----~~~A~~~~~~m~~~g~~p----------~~~ty~~li~~~~~~g~~ 456 (493)
.. ..|..++. .-.+.|..++. .|+ .+...++++.+.+.|..+ |..-++ -+..-++.|+.
T Consensus 162 ~~-~~ga~~~~~d~~g~TpLh~A~~-~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~t-pL~~A~~~g~~ 238 (260)
T 3jxi_A 162 NG-HKQADLRRQDSRGNTVLHALVA-IADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLS-PLMMAAKTGKI 238 (260)
T ss_dssp CS-SCCCCTTCCCTTSCCHHHHHHH-HCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCC-HHHHHHHTTCH
T ss_pred cc-ccCCCCcccCCCCCcHHHHHHH-hccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCC-HHHHHHHcCCH
Confidence 10 05555543 22344444433 333 222234444555444322 222223 33444677888
Q ss_pred HHHHHHHHHHHH
Q 011102 457 AKCRDVCKEAEM 468 (493)
Q Consensus 457 ~~A~~l~~~m~~ 468 (493)
+-+..+++.-..
T Consensus 239 ~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 239 GIFQHIIRREIA 250 (260)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC
Confidence 777766665543
No 273
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.51 E-value=1.3e+02 Score=24.51 Aligned_cols=67 Identities=9% Similarity=0.036 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCCC
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK--CREALTVVWNMEASNCLFD 404 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~--~~~A~~l~~~M~~~gi~pd 404 (493)
..+.+|.-|...|++++|.+.++++..-. -...+.+.++..++=+.++ .+.+..++..+...|+-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 34667777888888888888888876111 1123445566666666432 4567777777777665443
No 274
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=43.21 E-value=71 Score=29.08 Aligned_cols=116 Identities=8% Similarity=0.039 Sum_probs=79.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcC
Q 011102 342 MKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN--CLFDLPAYRVVIKLFVALN 419 (493)
Q Consensus 342 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g--i~pd~~ty~~li~~~~~~g 419 (493)
+....+.|++++|++....-.+.. +-|...=..|++-+|-.|++++|.+=++...+.. ..|-..+|..+|.+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-----
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-----
Confidence 345678899999999887766542 4577777889999999999999998888776542 23344456666554
Q ss_pred CHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH
Q 011102 420 DISRAIRYFSKLKEAGFCP-----TYDIYRDMIRIFM--ASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 420 ~~~~A~~~~~~m~~~g~~p-----~~~ty~~li~~~~--~~g~~~~A~~l~~~m~~ 468 (493)
+..=.+....+-.| ...-...|++++. ..|+.++|.++-++..+
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 22222333333332 3334567777766 46999999999888765
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=41.64 E-value=1.3e+02 Score=25.93 Aligned_cols=54 Identities=15% Similarity=-0.042 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 011102 385 KCREALTVVWNMEASNCLFD-LPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP 438 (493)
Q Consensus 385 ~~~~A~~l~~~M~~~gi~pd-~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 438 (493)
...++.++|..|..+||--. ..-|...-..+...|++.+|.++|+.=.+.+-+|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35566666666666554333 2334555555556666666666666666555555
No 276
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=40.38 E-value=25 Score=29.83 Aligned_cols=13 Identities=15% Similarity=0.074 Sum_probs=5.9
Q ss_pred HhcCCHHHHHHHH
Q 011102 274 VKGGNLKLAWKLL 286 (493)
Q Consensus 274 ~~~g~~~~A~~l~ 286 (493)
++.|+++....++
T Consensus 14 a~~g~~~~~~~l~ 26 (186)
T 3t8k_A 14 AMLGTYEDFLELF 26 (186)
T ss_dssp HHHSCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3445555543333
No 277
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=40.01 E-value=24 Score=28.69 Aligned_cols=10 Identities=20% Similarity=0.029 Sum_probs=4.2
Q ss_pred CCHHHHHHHH
Q 011102 313 DKYMLVMTLL 322 (493)
Q Consensus 313 ~~~~~a~~l~ 322 (493)
|+.+.+..++
T Consensus 19 g~~~~v~~ll 28 (165)
T 3twr_A 19 GDVETVKKLC 28 (165)
T ss_dssp TCHHHHHHHC
T ss_pred CCHHHHHHHH
Confidence 4444444433
No 278
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=39.74 E-value=51 Score=27.79 Aligned_cols=27 Identities=11% Similarity=0.016 Sum_probs=12.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 011102 343 KVGIRLQKFGVVESLFHWFTHSGRDPT 369 (493)
Q Consensus 343 ~~~~~~g~~~~A~~l~~~m~~~g~~p~ 369 (493)
...+..|+.+.-.++.+.+.+.|..+|
T Consensus 43 h~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 43 YDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 333444444444445555555554443
No 279
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=39.18 E-value=2.5e+02 Score=26.38 Aligned_cols=133 Identities=11% Similarity=0.051 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHH----HHhhcC-CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011102 281 LAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLD----ELGQRD-DLNLSQQDCTAIMKVGIRLQKFGVVE 355 (493)
Q Consensus 281 ~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~----~m~~~~-g~~p~~~~~~~li~~~~~~g~~~~A~ 355 (493)
.|.-+++...+.++++|..+...|+..+...+..-..-..+.+ +-.+.+ .-.-|......+-..|.+.+++.+|+
T Consensus 77 L~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae 156 (336)
T 3lpz_A 77 LAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAE 156 (336)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 3444445555666777777666666666655311111122222 222221 13345666777888999999999998
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 356 SLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLK 432 (493)
Q Consensus 356 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~ 432 (493)
..|- .|-.+....|..++.-+...+... .+|...-.++|. |.-.+++..|..+|+...
T Consensus 157 ~H~i----lg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 157 KHLV----LGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVLP-YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHT----TSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred HHHH----hcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Confidence 8873 244555566655555444443311 223333344444 344567888887776655
No 280
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A
Probab=38.72 E-value=2.5e+02 Score=26.17 Aligned_cols=191 Identities=12% Similarity=-0.007 Sum_probs=88.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcC-CCCHHHHHHHHHHHhhcCCCCCCH-----HHHH
Q 011102 266 LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKN-PDKYMLVMTLLDELGQRDDLNLSQ-----QDCT 339 (493)
Q Consensus 266 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~-~~~~~~a~~l~~~m~~~~g~~p~~-----~~~~ 339 (493)
|..++-++...---..|..+.+.|+..| .|..+. |..++.. +.++....+.|+.+-.+ .+.-+. ..|-
T Consensus 80 fe~~l~~l~~~p~~~DA~~L~~A~kG~G--tde~~l---ieIL~~Rs~~q~~~I~~aY~~~y~~-~Le~di~se~sG~~~ 153 (323)
T 1axn_A 80 FEHLMVALVTPPAVFDAKQLKKSMKGAG--TNEDAL---IEILTTRTSRQMKDISQAYYTVYKK-SLGDDISSETSGDFR 153 (323)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHCSSS--CCHHHH---HHHHHHSCHHHHHHHHHHHHHHHSS-CHHHHHHHHCCHHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhccCC--CCHHHH---hHHhcCCCHHHHHHHHHHHHHhhCc-CHHHHHHHhcCcHHH
Confidence 3334444443322346777777775544 566544 4433332 12344444555544332 121111 1355
Q ss_pred HHHHHHHHcCC-----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH---
Q 011102 340 AIMKVGIRLQK-----------FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDL--- 405 (493)
Q Consensus 340 ~li~~~~~~g~-----------~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~--- 405 (493)
.++-++....+ -.+|..+++.|.. |.-.|..++..++.. ....++....+.|+.+-...+.-++
T Consensus 154 ~ll~~l~~~~R~e~~~vd~~~a~~DA~~L~~A~~~-~~Gtde~~li~Il~t-Rs~~~L~~i~~~Y~~~~g~~Le~~I~~e 231 (323)
T 1axn_A 154 KALLTLADGRRDESLKVDEHLAKQDAQILYKAGEN-RWGTDEDKFTEILCL-RSFPQLKLTFDEYRNISQKDIVDSIKGE 231 (323)
T ss_dssp HHHHHHHTTCSCCCSCCCHHHHHHHHHHHHHHTTT-SSSCCHHHHHHHHHH-SCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHhcccccCCCCCccHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHh-CCHHHHHHHHHHHHHHHCcCHHHHHhHh
Confidence 56666666543 2456677776642 223465554444432 1122344555555555433222111
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 406 ------PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 406 ------~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
..+.+++.+..... ...|..+++.|. |.-.|..++..+|-.- ..-++....+-|+++-.
T Consensus 232 ~sG~~~~~Ll~lv~~~r~~~-~~~A~~L~~A~~--g~GTde~~lirilv~R-s~~~L~~i~~~Y~~~yg 296 (323)
T 1axn_A 232 LSGHFEDLLLAIVNCVRNTP-AFLAERLHRALK--GIGTDEFTLNRIMVSR-SEIDLLDIRTEFKKHYG 296 (323)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHS--SSSCCHHHHHHHHHHH-TTTTHHHHHHHHHHHHS
T ss_pred cCchHHHHHHHHHHhcCCcc-HHHHHHHHHhcc--cCCCCHHHhhhhhhhC-CHHHHHHHHHHHHHHcC
Confidence 12233333322222 235888888885 4446766665554331 22356666666666543
No 281
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=38.51 E-value=1.6e+02 Score=23.96 Aligned_cols=66 Identities=8% Similarity=0.149 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 296 LDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWF 361 (493)
Q Consensus 296 pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 361 (493)
.+..-+..++..+.........+..+|..+...+.-..+..-|..++.........++...+|+.+
T Consensus 36 i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~ 101 (183)
T 1s6c_A 36 VNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLY 101 (183)
T ss_dssp ECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 344444445544433212345555666666443222334444444444333333333444444444
No 282
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.85 E-value=1.3e+02 Score=26.73 Aligned_cols=91 Identities=11% Similarity=0.032 Sum_probs=61.8
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHhhcC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011102 304 LILELGKNPDKYMLVMTLLDELGQRD-DLNL----SQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIH 378 (493)
Q Consensus 304 li~~~~~~~~~~~~a~~l~~~m~~~~-g~~p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~ 378 (493)
-++.+... .++++|.+++++.++.. +++. +...-...|..-.....-.-+..+.+++. . ..+...-...+.
T Consensus 24 eLDv~IA~-r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELAR-LRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHH
T ss_pred HHHHHHHH-HhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHH
Confidence 57888888 89999999999876531 2222 11122333444444444555666666663 3 566777788889
Q ss_pred HHHcCCCHHHHHHHHHHHHH
Q 011102 379 SRLSEKKCREALTVVWNMEA 398 (493)
Q Consensus 379 ~~~~~g~~~~A~~l~~~M~~ 398 (493)
.+.+.|+.++|.++|=+.+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 99999999999999987765
No 283
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=37.41 E-value=21 Score=32.51 Aligned_cols=181 Identities=11% Similarity=-0.000 Sum_probs=79.9
Q ss_pred HHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhcCCCCH
Q 011102 239 VEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPS---IYAKLILELGKNPDKY 315 (493)
Q Consensus 239 i~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---t~~~li~~~~~~~~~~ 315 (493)
+...+..|+.+..+.+.....-.+..--.+.+..-+..|+.+-+ +.+.+.|..++.. -++.| ...+.. |..
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L-~~A~~~-g~~ 108 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTAL-YYAVDS-GNM 108 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHH-HHHHHT-TCH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHH-HHHHHc-CCH
Confidence 34445566655555553332211111123445555566665544 3344456544432 12233 333444 555
Q ss_pred HHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHH
Q 011102 316 MLVMTLLDELGQRDDLNLSQ---QDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVV-MYTTLIHSRLSEKKCREALT 391 (493)
Q Consensus 316 ~~a~~l~~~m~~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-ty~~li~~~~~~g~~~~A~~ 391 (493)
+-+..+++. |..++. .-+.+.+...+..|+.+-+ +.+.+.|..+... .-.+.+...+..|+.+-+.-
T Consensus 109 ~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~ 179 (285)
T 3kea_A 109 QTVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMIL 179 (285)
T ss_dssp HHHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHH
Confidence 544444433 222222 1223445555566665443 3334444333111 22344444556666665555
Q ss_pred HHHHHHHCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 011102 392 VVWNMEASNCLFDLP---AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI 442 (493)
Q Consensus 392 l~~~M~~~gi~pd~~---ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 442 (493)
+++. |..++.. -.+..+...++.|+.+ +.+.+.+.|..++...
T Consensus 180 Ll~~----gad~n~~~~~g~t~~L~~A~~~~~~~----~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 180 LLDY----MTSTNTNNSLLFIPDIKLAIDNKDIE----MLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHH----HHHTCTTCCCBCCTTHHHHHHHTCHH----HHHHHTTSCBCSTTTT
T ss_pred HHHc----CCCCCcccCCCCChHHHHHHHcCCHH----HHHHHHHcCCCCCCCC
Confidence 5543 3223322 2233344445556543 4444556676666554
No 284
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal binding protein, calcium, calcium/phospholipid-binding; 1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A 1i4a_A 1aow_A
Probab=36.69 E-value=2.6e+02 Score=25.93 Aligned_cols=192 Identities=12% Similarity=0.060 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCH-----HHHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQ-----QDCT 339 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~-----~~~~ 339 (493)
-|..++-++...---..|..+.+.|+..| .|..++..++.. +.+.++....+.|+.+-.. .+.-+. ..|-
T Consensus 78 ~fe~~l~~l~~~~~~~DA~~L~~A~kg~G--tde~~lieIL~~--Rs~~ql~~I~~aY~~~y~~-~Le~di~~e~sG~~~ 152 (322)
T 2zhj_A 78 NFEQVILGMMTPTVLYDVQELRRAMKGAG--TDEGCLIEILAS--RNPEEIRRINQTYQQQYGR-SLEEDICSDTSFMFQ 152 (322)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHSSSC--CCHHHHHHHHHH--SCHHHHHHHHHHHHHHHSS-CHHHHHHHHCCHHHH
T ss_pred cHHHHHHHHcCCcHHHHHHHHHHhhhccC--CCHHHHHHHHhc--CCHHHHHHHHHHHHHHhCc-cHHHHHHhhcCchHH
Confidence 46666666666554567888888875544 676655444422 2212444555555544332 121111 1355
Q ss_pred HHHHHHHHcCC-----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH--
Q 011102 340 AIMKVGIRLQK-----------FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP-- 406 (493)
Q Consensus 340 ~li~~~~~~g~-----------~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~-- 406 (493)
.++-++.+..+ -.+|..+++.+. .|.-.|..++..++.. ....++....+.|+++-...+.-++.
T Consensus 153 ~~l~~ll~~~r~e~~~vd~~~a~~dA~~L~~A~~-~~~Gtde~~li~Il~~-Rs~~~L~~i~~~Y~~~~g~~Le~~I~~e 230 (322)
T 2zhj_A 153 RVLVSLTAGGRDEGNYLDDALVKQDAQDLYEAGE-KRWGTDEVKFLSILCS-RNRNHLLHVFDEYKRISQKDIEQSIKSE 230 (322)
T ss_dssp HHHHHHHHCCCCCSCCCCHHHHHHHHHHHHHHTT-TSSSCCHHHHHHHHHH-SCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHhhccccccccCCCHHHHHHHHHHHhhh-cCCCCchHHHhHhHHh-CCHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence 55556666443 235667777653 2333466555544432 11223455555555544332211111
Q ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 407 -------AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 407 -------ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
...+++.+ .+....-.|..+++.|+..| .|..++..+|-.- ..-+.....+-|+++-
T Consensus 231 ~sGd~~~~Llalv~~-~~~~~~~~A~~L~~a~~g~G--tde~~lirilv~R-s~~dl~~i~~~Y~~~y 294 (322)
T 2zhj_A 231 TSGSFEDALLAIVKC-MRNKPAYFAERLYKSMKGLG--TDDSTLIRVMVSR-AEIDMLDIRANFKRLY 294 (322)
T ss_dssp CCHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHSSSS--CCHHHHHHHHHHH-TTTTHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHH-hcCccHHHHHHHHHHhccCC--CCHHHHHHHHHHc-CHHHHHHHHHHHHHHh
Confidence 12222222 22223357888888886544 5666555444321 1245666666666654
No 285
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=36.19 E-value=1.1e+02 Score=29.16 Aligned_cols=26 Identities=8% Similarity=0.052 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 011102 300 IYAKLILELGKNPDKYMLVMTLLDELG 326 (493)
Q Consensus 300 t~~~li~~~~~~~~~~~~a~~l~~~m~ 326 (493)
...++|.-|... |++++|.+.++++.
T Consensus 14 ~~~~ii~EY~~~-~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 14 LTETVVTEYLNS-GNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHH-CCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHhC
Confidence 445677777777 77777777777763
No 286
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.78 E-value=1.6e+02 Score=23.19 Aligned_cols=66 Identities=9% Similarity=0.023 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCCC
Q 011102 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK--CREALTVVWNMEASNCLFD 404 (493)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~--~~~A~~l~~~M~~~gi~pd 404 (493)
.+.+|.-|...|+.++|.+.++++..-. --..+.+.++..++=+.+. .+.+.+++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4667788888888888888888876111 1123445566666666542 4567777877777665443
No 287
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=35.48 E-value=2.7e+02 Score=25.74 Aligned_cols=191 Identities=14% Similarity=0.072 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcC-CCCHHHHHHHHHHHhhcCCCCCCH-----HHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKN-PDKYMLVMTLLDELGQRDDLNLSQ-----QDC 338 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~-~~~~~~a~~l~~~m~~~~g~~p~~-----~~~ 338 (493)
-|..++-+++..-.-.+|..+.+.|+..| .|..+ +|..++.. +.++....+.|+.+-.. .+.-+. ..|
T Consensus 73 ~f~~ll~~l~~~~~~~dA~~L~~A~kg~G--tde~~---lieIL~tRs~~ql~~i~~~Y~~~yg~-~Le~dI~~e~sG~~ 146 (315)
T 1dm5_A 73 NYEAAALALLRKPDEFLAEQLHAAMKGLG--TDKNA---LIDILCTQSNAQIHAIKAAFKLLYKE-DLEKEIISETSGNF 146 (315)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHSSS--CCHHH---HHHHHSSCCHHHHHHHHHHHHHHHSS-CHHHHHHHHCCHHH
T ss_pred cHHHHHHHHccChhHHHHHHHHHHhhcCC--Cchhh---hhhhHhcCCHHHHHHHHHHHHHHhCc-cHHHHHHhccCchH
Confidence 46667777776655677888888886655 56654 44444443 12333334444433222 111111 135
Q ss_pred HHHHHHHHHcCCH-----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-----
Q 011102 339 TAIMKVGIRLQKF-----------GVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCL----- 402 (493)
Q Consensus 339 ~~li~~~~~~g~~-----------~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~----- 402 (493)
-.++-++.++.+. ..|..+++.|... .-.|..+++.++..- ...++....+.|+++-...+.
T Consensus 147 ~~~L~~lv~~~r~~~~~vd~~~a~~dA~~L~~A~~~~-~GTde~~lirIl~~R-s~~~L~~i~~~Y~~~~g~~L~~~I~~ 224 (315)
T 1dm5_A 147 QRLLVSMLQGGRKEDEPVNAAHAAEDAAAIYQAGEGQ-IGTDESRFNAVLATR-SYPQLHQIFHEYSKISNKTILQAIEN 224 (315)
T ss_dssp HHHHHHHHTTCCCTTCCCCHHHHHHHHHHHHHHTTTS-SSCCHHHHHHHHHHS-CHHHHHHHHHHHHHHSSSCHHHHHHH
T ss_pred HHHHHHHHccccCCCCCCCHHHHHHHHHHHHHHhhCc-CCCcHHHHHHHHHhC-CHHHHHHHHHHHHHHhCCCHHHHHhh
Confidence 5555666665442 4577888877642 234665555554321 112233344444333221111
Q ss_pred -CCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 403 -FDLP---AYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 403 -pd~~---ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
.+-. .+.+++. |.+....--|..+.+.|+. .-.|..+...+|-.- ..-+.....+-|+++-
T Consensus 225 e~sGd~~~~Llalv~-~~~~~~~~~A~~L~~am~g--~Gtd~~~Liriiv~r-se~dl~~Ik~~y~~~y 289 (315)
T 1dm5_A 225 EFSGDIKNGLLAIVK-SVENRFAYFAERLHHAMKG--LGTSDKTLIRILVSR-SEIDLANIKETFQAMY 289 (315)
T ss_dssp HCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCT--TCCCHHHHHHHHHHH-TTTTHHHHHHHHHHHH
T ss_pred hcCchHHHHHHHHHH-HhcCchHHHHHHHHHHhhc--CCCCHHHHhHHHHhc-CHHHHHHHHHHHHHHh
Confidence 0111 1222222 2222233457777778764 445666655444331 1235666666666654
No 288
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.38 E-value=86 Score=25.78 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCH
Q 011102 423 RAIRYFSKLKEAGFCPT-YDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475 (493)
Q Consensus 423 ~A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 475 (493)
++.++|..|..+||--. ..-|......+...|++++|.++|+.-.+++-.|-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 36667777766655432 344566666666777777777777777776666643
No 289
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=35.24 E-value=2.2e+02 Score=24.80 Aligned_cols=53 Identities=4% Similarity=-0.080 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 011102 351 FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404 (493)
Q Consensus 351 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd 404 (493)
.+.+..+++.+.+.|..-|..--.+.+....+.+.+ ....+-.++.++||..+
T Consensus 92 ~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~~~ 144 (221)
T 3d5l_A 92 EEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIGES 144 (221)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCCHH
Confidence 345667777777777776665555666666552211 34556677778888544
No 290
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=35.24 E-value=16 Score=31.66 Aligned_cols=16 Identities=0% Similarity=-0.161 Sum_probs=7.2
Q ss_pred HHHcCCHHHHHHHHHH
Q 011102 450 FMASGRLAKCRDVCKE 465 (493)
Q Consensus 450 ~~~~g~~~~A~~l~~~ 465 (493)
.++.|+.+-+..+++.
T Consensus 217 A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 217 AKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHh
Confidence 3444555444444443
No 291
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=35.16 E-value=17 Score=32.53 Aligned_cols=247 Identities=11% Similarity=0.005 Sum_probs=127.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHH---HHHHHHHHHHHcCCCchhhhHHHhhccC---cHHHHHHHHHHH
Q 011102 200 SFTVRELGHMNLPERALQTFCWAQKQPHLFPDDR---LLASTVEVLARHHELKVPFKLENFVSLA---SKGVLEATAKGF 273 (493)
Q Consensus 200 ~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~---t~~~li~~~~~~g~~~~~~~l~~~~~~~---~~~~~~~li~~~ 273 (493)
++.+...++.|+.+....+++ . |..++.. .-.+.+...+..|+.+..+.+......+ +..- .+.+...
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~----~-g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-~t~L~~A 79 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLE----G-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG-ATPFLLA 79 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH----T-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC-CCHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHH----c-CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC-CCHHHHH
Confidence 355667778888776655554 3 4333321 1124555566777766666554332222 2211 2344455
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHH------------HH
Q 011102 274 VKGGNLKLAWKLLMVAKDGGRMLDPS---IYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQ------------DC 338 (493)
Q Consensus 274 ~~~g~~~~A~~l~~~m~~~g~~pd~~---t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~------------~~ 338 (493)
++.|+.+ +++.+.+.|..++.. -++. +...+.. |..+-+..++ +. |..++.. .-
T Consensus 80 ~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~-~~~~~~~~Ll----~~-g~~~~~~~~~~~~~~~~~~~g 148 (285)
T 1wdy_A 80 AIAGSVK----LLKLFLSKGADVNECDFYGFTA-FMEAAVY-GKVKALKFLY----KR-GANVNLRRKTKEDQERLRKGG 148 (285)
T ss_dssp HHHTCHH----HHHHHHHTTCCTTCBCTTCCBH-HHHHHHT-TCHHHHHHHH----HT-TCCTTCCCCCCHHHHHTTCCC
T ss_pred HHcCCHH----HHHHHHHcCCCCCccCcccCCH-HHHHHHh-CCHHHHHHHH----Hh-CCCcccccccHHHHHhhccCC
Confidence 5667665 445555677665432 2233 4444455 6655444443 33 3433321 01
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHH
Q 011102 339 TAIMKVGIRLQKFGVVESLFHWFTHSGRDPTV---VMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPA--YRVVIK 413 (493)
Q Consensus 339 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~t--y~~li~ 413 (493)
.+.+...++.|+.+-+..+++. .|..++. ...+.|..+ +..|......++++.+.+.|..++... -.+.+.
T Consensus 149 ~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~ 224 (285)
T 1wdy_A 149 ATALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224 (285)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 2445556677876655444432 2555433 334444444 445565556677777888888776532 235566
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCccC
Q 011102 414 LFVALNDISRAIRYFSKLKEAGFCPTYDIY--RDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474 (493)
Q Consensus 414 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty--~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 474 (493)
..++.|+.+-+..+++. .|..++.... .+-+..-++.|+.+ +.+.+.+.|..||
T Consensus 225 ~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~l~~A~~~~~~~----i~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLAVELKLKK----IAELLCKRGASTD 280 (285)
T ss_dssp HHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHHSSCSC
T ss_pred HHHHcCCHHHHHHHHhc---cCCCccccCCCCCcHHHHHHHcCcHH----HHHHHHHcCCCCC
Confidence 66777887655444431 5655543221 22334445566654 4445556676665
No 292
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=34.86 E-value=3.9e+02 Score=27.41 Aligned_cols=261 Identities=11% Similarity=0.004 Sum_probs=131.5
Q ss_pred HhhccCCCCHHHHHHHHhhhcccC-cHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhh
Q 011102 174 IKGLDSHKDVAEVLDKCGRFLRKG-SLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPF 252 (493)
Q Consensus 174 l~~~~~~~~~~~a~~~~~~m~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~ 252 (493)
+..+.+.++....+..+...+... .-.....+....|+..+|......+=......|+ .+..++..+.+.|.+....
T Consensus 79 l~~l~~~~~w~~~l~~~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~--~c~~l~~~~~~~g~lt~~~ 156 (618)
T 1qsa_A 79 VNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN--ACDKLFSVWRASGKQDPLA 156 (618)
T ss_dssp HHHHHHTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT--HHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHhCCCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcH--HHHHHHHHHHHCCCCCHHH
Confidence 355556677777777555422111 2233455666677766666666555444234444 4577777777777654433
Q ss_pred hHHHhhccCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCC
Q 011102 253 KLENFVSLASKGVLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLN 332 (493)
Q Consensus 253 ~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~ 332 (493)
.+. =+......|+...|..+...+ .++...+...+.+..+.+..+ ...... +.
T Consensus 157 ~~~-------------R~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~p~~~---~~~~~~------~~ 209 (618)
T 1qsa_A 157 YLE-------------RIRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANNPNTV---LTFART------TG 209 (618)
T ss_dssp HHH-------------HHHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHCGGGH---HHHHHH------SC
T ss_pred HHH-------------HHHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhChHhH---HHHHhc------cC
Confidence 321 123334455555555554432 133322222222333322222 111111 11
Q ss_pred CCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 011102 333 LSQQ---DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMY----TTLIHSRLSEKKCREALTVVWNMEASNCLFDL 405 (493)
Q Consensus 333 p~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty----~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~ 405 (493)
++.. .+...+.-+.+. +.+.|...|....+.+. .+.... ..+...+...+...++...+....... .+.
T Consensus 210 ~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~ 285 (618)
T 1qsa_A 210 ATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QST 285 (618)
T ss_dssp CCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCH
T ss_pred CChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CCh
Confidence 2222 222223334443 67888888887764432 233222 233333334453556666666544432 333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 406 PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 406 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
....-.+..-.+.|+++.|...|+.|...... ...-.--+-.++...|+.++|..+|..+.+
T Consensus 286 ~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 286 SLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 33333444445678888888888887643221 222223344566778888888888888764
No 293
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=34.56 E-value=98 Score=23.07 Aligned_cols=63 Identities=8% Similarity=-0.049 Sum_probs=33.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011102 392 VVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCR 460 (493)
Q Consensus 392 l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 460 (493)
+++.+.+.|+- +......+-. .......+.|.++++.+..+|-. .|..+++++...|+..-|.
T Consensus 26 vld~L~~~~vl-t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~~----Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 26 LWDVLLSRELF-RPHMIEDIQR-AGSGSRRDQARQLIIDLETRGSQ----ALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp THHHHHHTTSS-CHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCTT----HHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHcCCC-CHHHHHHHHh-ccCCChHHHHHHHHHHHHHcChH----HHHHHHHHHHHcCcHHHHH
Confidence 55555555552 3333333222 10124567777777777666543 6677777776656655443
No 294
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=34.01 E-value=2.9e+02 Score=25.63 Aligned_cols=190 Identities=8% Similarity=-0.014 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcC-CCCHHHHHHHHHHHhhcCCCCCCH-----HHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKN-PDKYMLVMTLLDELGQRDDLNLSQ-----QDC 338 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~-~~~~~~a~~l~~~m~~~~g~~p~~-----~~~ 338 (493)
-|-.++-++....-..+|..+.+.|+ |...|..++ |..+|.. +.++....+.|+.+-.. .+.-+. ..|
T Consensus 77 ~f~~ll~~l~~~~~~~dA~~l~~A~k--g~Gtde~~l---ieIL~tRs~~ql~~i~~~Y~~~~g~-~Le~dI~~e~sG~~ 150 (321)
T 1n00_A 77 DFERLVLLWALDPAERDALLANEATK--RWTSSNQVL---MEIACTRSANQLLHARQAYHARYKK-SLEEDVAHHTTGDF 150 (321)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHS--SSCSSCHHH---HHHHHSSCHHHHHHHHHHHHHHHSS-CHHHHHHHHCCHHH
T ss_pred hHHHHHHHHcCChhHHHHHHHHHHhh--ccCCCHHHH---HHHHhcCCHHHHHHHHHHHHHHhCc-cHHHHHHhccCcHH
Confidence 46666666666555677888888884 444666554 4444433 12334444444443322 121111 135
Q ss_pred HHHHHHHHHcCCHH-----------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC----
Q 011102 339 TAIMKVGIRLQKFG-----------VVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLF---- 403 (493)
Q Consensus 339 ~~li~~~~~~g~~~-----------~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~p---- 403 (493)
-.++-++.++.+-+ .|..+++.|...+. .|.. +..++.. ...-++....+.|+++-...+.-
T Consensus 151 ~~~L~~lv~~~r~~~~~vd~~~~~~dA~~L~~A~~g~~g-tde~-lirIl~~-Rs~~~L~~I~~~Y~~~yg~~L~~~I~~ 227 (321)
T 1n00_A 151 HKLLLPLVSSYRYEGEEVNMTLAKTEAKLLHEKISNKAY-SDDD-VIRVLAT-RSKAQINATLNHYKNEYGNDINKDLKA 227 (321)
T ss_dssp HHHHHHHHHCCCCCSCCCCHHHHHHHHHHHHHHHHTTCT-TCHH-HHHHHHH-SCHHHHHHHHHHHHHHHSSCTTGGGCS
T ss_pred HHHHHHHHhcccCCCcCCChhhhHHHHHHHHHHhhCcCC-CcHH-HHHHHHh-CCHHHHHHHHHHHHHHhCccHHHHHhh
Confidence 55666666665433 78899999986443 3443 4444322 11124455555565554332221
Q ss_pred ----CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 404 ----DL-PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 404 ----d~-~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
|. ..+.+++. |.+....--|..+.+.|+..| .|..+...+|-. ...-+.....+-|+++-
T Consensus 228 e~sGd~~~~Ll~iv~-~~~~~~~~~A~~L~~am~g~G--td~~~Liriiv~-rse~dl~~Ik~~y~~~y 292 (321)
T 1n00_A 228 DPKDEFLALLRSTVK-CLVYPEKYFEKVLRLAINRRG--TDEGALTRVVCT-RAEVDLKVIADEYQRRN 292 (321)
T ss_dssp STTCHHHHHHHHHHH-HHHCHHHHHHHHHHHHHTTCC--SCTTHHHHHHHH-HTTTTHHHHHHHHHHHH
T ss_pred hcCchHHHHHHHHHH-HhcCchHHHHHHHHHHhccCC--CCHHHHHHHHHH-cCHHHHHHHHHHHHHHh
Confidence 11 11222222 333333445788888887554 455444444332 12235666666666654
No 295
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=33.89 E-value=2e+02 Score=23.81 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHHHHcCC
Q 011102 231 DDRLLASTVEVLARHHE 247 (493)
Q Consensus 231 d~~t~~~li~~~~~~g~ 247 (493)
|...-...+.++++.+.
T Consensus 58 ~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGD 74 (201)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhhCC
Confidence 33344444444444443
No 296
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=33.88 E-value=2.6e+02 Score=25.11 Aligned_cols=19 Identities=16% Similarity=-0.008 Sum_probs=10.2
Q ss_pred HCCCccCHHHHHHHHHhhh
Q 011102 468 MAGFKLDKQTVVELLQIEK 486 (493)
Q Consensus 468 ~~g~~pd~~t~~~Ll~~~~ 486 (493)
+.|..|....-..+++++.
T Consensus 297 k~~~~~~~~le~l~~~l~~ 315 (319)
T 2chq_A 297 TEGANERIQLDAYLAYLST 315 (319)
T ss_dssp HTTCCHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHH
Confidence 3555555555555555543
No 297
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=33.54 E-value=2.1e+02 Score=23.92 Aligned_cols=162 Identities=13% Similarity=0.008 Sum_probs=87.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcCCHHH
Q 011102 202 TVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGNLKL 281 (493)
Q Consensus 202 li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g~~~~ 281 (493)
.+..+++.|.. .+...+..+... +|...-...+.++++.+.-+....+.....-++..+-...+.++.+.|..+
T Consensus 39 A~~~L~~~~~~-~~~~~L~~~l~~----~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~- 112 (211)
T 3ltm_A 39 AAYALGKIGDE-RAVEPLIKALKD----EDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDER- 112 (211)
T ss_dssp HHHHHHHHCCG-GGHHHHHHHTTC----SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-
T ss_pred HHHHHHHhCCc-cHHHHHHHHHcC----CCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHH-
Confidence 34555555553 334444334332 366666666777777765444444443334445555566666777777643
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 282 AWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWF 361 (493)
Q Consensus 282 A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 361 (493)
+...+..+.+ .++..+-...+.++++. +.. ++...+..+... ++..+-...+.++++.+. .++...+..+
T Consensus 113 ~~~~L~~~l~---d~~~~vr~~a~~aL~~~-~~~-~~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~-~~~~~~L~~~ 182 (211)
T 3ltm_A 113 AVEPLIKALK---DEDWFVRIAAAFALGEI-GDE-RAVEPLIKALKD----EDGWVRQSAADALGEIGG-ERVRAAMEKL 182 (211)
T ss_dssp GHHHHHHHTT---CSSHHHHHHHHHHHHHH-CCG-GGHHHHHHHTTC----SSHHHHHHHHHHHHHHCS-HHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCHHHHHHHHHHHHHc-CCH-HHHHHHHHHHcC----CCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 3444444443 26776666677777776 543 344455555443 566677777778887776 3445555554
Q ss_pred HHcCCCCCHHHHHHHHHHHHc
Q 011102 362 THSGRDPTVVMYTTLIHSRLS 382 (493)
Q Consensus 362 ~~~g~~p~~~ty~~li~~~~~ 382 (493)
.+ .++...=...+.++.+
T Consensus 183 l~---d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 183 AE---TGTGFARKVAVNYLET 200 (211)
T ss_dssp HH---HCCHHHHHHHHHHHHC
T ss_pred Hh---CCCHHHHHHHHHHHHh
Confidence 43 2344333333444433
No 298
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=32.58 E-value=5.1e+02 Score=28.01 Aligned_cols=48 Identities=4% Similarity=-0.193 Sum_probs=22.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011102 347 RLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397 (493)
Q Consensus 347 ~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~ 397 (493)
+.|.-++-..+++..+.. .+..--..++.+++...+.+...++++...
T Consensus 738 ~~g~~~~~~~l~~~~~~~---~~~~ek~~ll~aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 738 AQGGQDQWDFAWGQLQQA---QLVNEADKLRSALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp HHSCHHHHHHHHHHHHHC---CSHHHHHHHHHHHTTCCCHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHcc---CCHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 334444444444444431 222333445555555555555555555443
No 299
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=32.19 E-value=3.1e+02 Score=25.40 Aligned_cols=192 Identities=12% Similarity=0.071 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCH-----HHHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQ-----QDCT 339 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~-----~~~~ 339 (493)
-|..++-++...-.-.+|..+.+.|+.. ..|..++..++.. +.+.++....+.|+.+-.. .+.-+. ..|-
T Consensus 75 ~f~~ll~~l~~~~~~~DA~~L~~A~kg~--Gtde~~lieIL~~--Rs~~ql~~I~~aY~~~y~~-~Le~di~~e~sG~~~ 149 (320)
T 1yii_A 75 KFETLMVSLMRPARIFDAHALKHAIKGA--GTNEKVLTEILAS--RTPAEVQNIKQVYMQEYEA-NLEDKITGETSGHFQ 149 (320)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHSSS--SCCHHHHHHHHHH--SCHHHHHHHHHHHHHHHSS-CHHHHHHHHCCHHHH
T ss_pred hHHHHHHHHccChHHHHHHHHHHHhccC--CCchHHHhHHHhc--CCHHHHHHHHHHHHHhhCc-CHHHHHHhhcCCcHH
Confidence 4666777777666677888888888544 4676655444432 2212344444555544322 121111 1355
Q ss_pred HHHHHHHHcCC-----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--------
Q 011102 340 AIMKVGIRLQK-----------FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASN-------- 400 (493)
Q Consensus 340 ~li~~~~~~g~-----------~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g-------- 400 (493)
.++-++.++.+ -.+|..+++.|.. |.-.|..++..++.. ....++....+.|+++-...
T Consensus 150 ~~l~~l~~~~r~~~~~vd~~~a~~dA~~L~~A~~~-~~Gtde~~li~Il~t-Rs~~~L~~i~~~Y~~~~g~~L~~~I~~e 227 (320)
T 1yii_A 150 RLLVVLLQANRDPDGRVDEALVEKDAQVLFRAGEL-KWGTDEETFITILGT-RSVSHLRRVFDKYMTISGFQIEETIDRE 227 (320)
T ss_dssp HHHHHHHTTCCCCSCCCCHHHHHHHHHHHHHHHHT-TTCSSHHHHHHHHHH-SCHHHHHHHHHHHHHHHSSCHHHHHCCT
T ss_pred HHHHHHHhhccCccccCCchHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHh-CCHHHHHHHHHHHHHHHCcCHHHHHhhh
Confidence 55556666444 1347888888873 233466555555432 11123444555554443221
Q ss_pred CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 401 CLFDL-PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 401 i~pd~-~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
..-|. ....+++. |.+....-.|..+++.|...| .|..++..+|-. ...-+.....+-|+++-
T Consensus 228 ~sGd~~~~Llalv~-~~~~~~~~~A~~L~~a~~g~G--td~~~Lirilv~-Rse~dl~~Ik~~y~~~y 291 (320)
T 1yii_A 228 TSGDLEKLLLAVVK-CIRSVPAYFAETLYYSMKGAG--TDDDTLIRVMVS-RSEIDLLDIRHEFRKNF 291 (320)
T ss_dssp TCCHHHHHHHHHHH-HHHCHHHHHHHHHHHHHSSSS--CCHHHHHHHHHH-HTTTTHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHH-hccCCcHHHHHHHHHhhccCC--CcHHHHHHHHHh-cCHHHHHHHHHHHHHhc
Confidence 11111 12222222 223333447888888887544 566655444432 12345666666666654
No 300
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.76 E-value=14 Score=32.17 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=8.0
Q ss_pred HHHhCCChHHHHHHHH
Q 011102 205 ELGHMNLPERALQTFC 220 (493)
Q Consensus 205 ~~~~~g~~~~A~~l~~ 220 (493)
..++.|+.+....+++
T Consensus 15 ~A~~~g~~~~~~~Ll~ 30 (240)
T 3eu9_A 15 KATQYGIYERCRELVE 30 (240)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHH
Confidence 3455666555444443
No 301
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=30.45 E-value=5.5e+02 Score=27.74 Aligned_cols=92 Identities=8% Similarity=0.011 Sum_probs=60.9
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011102 338 CTAIMKVGIRLQK---FGVVESLFHWFTHSG----RDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRV 410 (493)
Q Consensus 338 ~~~li~~~~~~g~---~~~A~~l~~~m~~~g----~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~ 410 (493)
-..++...|+.|. .++|.+.|++....+ +.||... ++...-.+.|.-++-..+++..+.. .+..--..
T Consensus 689 r~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ 763 (909)
T 4fke_A 689 EINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADK 763 (909)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHH
Confidence 3457788888887 568889998876532 5677542 2333344567766666667766664 23444567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 411 VIKLFVALNDISRAIRYFSKLKEA 434 (493)
Q Consensus 411 li~~~~~~g~~~~A~~~~~~m~~~ 434 (493)
++.+++...+.+...++++.....
T Consensus 764 ll~aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 764 LRSALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHHHHTTCCCHHHHHHHHHHTTCT
T ss_pred HHHHhCCCCCHHHHHHHHHHHhCC
Confidence 888888888888888887776643
No 302
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=30.21 E-value=3.8e+02 Score=25.76 Aligned_cols=165 Identities=10% Similarity=0.010 Sum_probs=103.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHH--
Q 011102 300 IYAKLILELGKNPDKYMLVMTLLDELGQRDDLNL---SQQDCTAIMKVGIRLQK-FGVVESLFHWFTHSGRDPTVVMY-- 373 (493)
Q Consensus 300 t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p---~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~ty-- 373 (493)
....|..-|.+. |+.++..+++.....-.+.-+ .......+|+.+....+ .+.-.++..+..+.... .-.+|
T Consensus 21 ~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 21 GILQQGELYKQE-GKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHH-TCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 345677778888 899999988887754322112 22345677887776533 44444554444321101 11122
Q ss_pred ----HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HCCCCCCHHH
Q 011102 374 ----TTLIHSRLSEKKCREALTVVWNMEASNCLFD-----LPAYRVVIKLFVALNDISRAIRYFSKLK--EAGFCPTYDI 442 (493)
Q Consensus 374 ----~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd-----~~ty~~li~~~~~~g~~~~A~~~~~~m~--~~g~~p~~~t 442 (493)
.-|..-|...|++.+|.+++.++.+.=-..| ...|-.-+..|...|++.++...+..-. ...+.++..+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 3578899999999999999999876411112 2346677788999999999999998765 2233233333
Q ss_pred HHHHHHH-----HH-HcCCHHHHHHHHHHHH
Q 011102 443 YRDMIRI-----FM-ASGRLAKCRDVCKEAE 467 (493)
Q Consensus 443 y~~li~~-----~~-~~g~~~~A~~l~~~m~ 467 (493)
- ..|+. +. ..++|.+|...|-+..
T Consensus 179 ~-a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 Q-GALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp H-HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred H-HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 2 22222 34 6789999988877653
No 303
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=30.10 E-value=1.4e+02 Score=20.90 Aligned_cols=32 Identities=13% Similarity=0.001 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 011102 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALN 419 (493)
Q Consensus 388 ~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g 419 (493)
.+.++++.+.+.+...+..|.--.|..+.+.|
T Consensus 35 s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 35 SAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444444433333444433444444333
No 304
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.79 E-value=1.4e+02 Score=21.01 Aligned_cols=58 Identities=12% Similarity=0.187 Sum_probs=24.5
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 011102 396 MEASNCLFDLPAYRVVIKLFVALN-DISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASG 454 (493)
Q Consensus 396 M~~~gi~pd~~ty~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g 454 (493)
|++.|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|-.-.++.+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344454444333 23334443332 33344455555544443334444444444444444
No 305
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=29.41 E-value=5.7e+02 Score=27.58 Aligned_cols=88 Identities=6% Similarity=-0.017 Sum_probs=57.6
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHc----CCCCCHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011102 338 CTAIMKVGIRLQK---FGVVESLFHWFTHS----GRDPTVVM--YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAY 408 (493)
Q Consensus 338 ~~~li~~~~~~g~---~~~A~~l~~~m~~~----g~~p~~~t--y~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty 408 (493)
-..++...|+.|. +++|.+.|++.... .+.||... |.+-+ |.-++-..+++..++. .+..--
T Consensus 683 r~~~~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~vy~~~~------g~~~~~~~l~~~y~~~---~~~~ek 753 (897)
T 2xdt_A 683 RSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGA------QSTEGWDFLYSKYQFS---LSSTEK 753 (897)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHHT------TSHHHHHHHHHHHTTC---CCHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcCCCCcchhhhEEEEec------CCHHHHHHHHHHHHcc---CCHHHH
Confidence 4566778888888 66888999887654 24555542 33222 5554444455554432 344445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 011102 409 RVVIKLFVALNDISRAIRYFSKLKEA 434 (493)
Q Consensus 409 ~~li~~~~~~g~~~~A~~~~~~m~~~ 434 (493)
+.++.+++...+.....++++...+.
T Consensus 754 ~~ll~aL~c~~~~~~l~~~L~~~~~~ 779 (897)
T 2xdt_A 754 SQIEFALCRTQNKEKLQWLLDESFKG 779 (897)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHC
T ss_pred HHHHHHhccCCCHHHHHHHHHHHhCC
Confidence 77889998889988888888887753
No 306
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=28.90 E-value=1.8e+02 Score=21.78 Aligned_cols=56 Identities=11% Similarity=0.142 Sum_probs=27.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHCCCccCHHHHHHH
Q 011102 424 AIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEA-----EMAGFKLDKQTVVEL 481 (493)
Q Consensus 424 A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m-----~~~g~~pd~~t~~~L 481 (493)
|.++.+++...|+.|+..+..-++..|...+- + |.++.++. ...|..|+..+.+.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 44455555555565555555555555555442 1 22222221 234566665555444
No 307
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.72 E-value=1.8e+02 Score=23.34 Aligned_cols=11 Identities=18% Similarity=0.202 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 011102 423 RAIRYFSKLKE 433 (493)
Q Consensus 423 ~A~~~~~~m~~ 433 (493)
.|.++++.+.+
T Consensus 39 sa~ei~~~l~~ 49 (145)
T 2fe3_A 39 TADDIYKALEG 49 (145)
T ss_dssp CHHHHHHHHGG
T ss_pred CHHHHHHHHHH
Confidence 34444444433
No 308
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=28.39 E-value=1.2e+02 Score=28.85 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 011102 266 LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLD----PSIYAKLILELGKNPDKYMLVMTLLDELGQR 328 (493)
Q Consensus 266 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~ 328 (493)
-.++|.-|...|++++|.+.++++.. |+ .+.+..+..++-+....-+.+-.++..+...
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~ 77 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQE 77 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHC
Confidence 45677777777888888888877754 32 2344444444444422234445555555554
No 309
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.37 E-value=60 Score=30.68 Aligned_cols=62 Identities=16% Similarity=0.059 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcC
Q 011102 301 YAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQ-KFGVVESLFHWFTHSG 365 (493)
Q Consensus 301 ~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g 365 (493)
...+|.-|... |+.++|.+.++++..- .. ....++..+..++-+.. .-+.+..++..+.+.|
T Consensus 14 ~~~ll~Ey~~~-~d~~Ea~~ci~el~~p-~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~ 76 (339)
T 1ug3_A 14 SKAIIEEYLHL-NDMKEAVQCVQELASP-SL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAG 76 (339)
T ss_dssp HHHHHHHHHHH-CCHHHHHHHHHTTCCG-GG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC-CCHHHHHHHHHHcCCc-cc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCC
Confidence 45677777777 7777777777777432 22 12233333333333221 1334455556565443
No 310
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=28.08 E-value=2.1e+02 Score=23.75 Aligned_cols=52 Identities=13% Similarity=0.168 Sum_probs=26.1
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCH
Q 011102 424 AIRYFSKLKEAGFCPT-YDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475 (493)
Q Consensus 424 A~~~~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 475 (493)
+..+|..|..+||--. ..-|......+-..|++.+|.++|+.-.+++-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 4455555555444322 233444444455555555555555555555555543
No 311
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=27.76 E-value=29 Score=29.19 Aligned_cols=15 Identities=7% Similarity=-0.110 Sum_probs=7.4
Q ss_pred HHHHHHHHHCCCCCC
Q 011102 390 LTVVWNMEASNCLFD 404 (493)
Q Consensus 390 ~~l~~~M~~~gi~pd 404 (493)
.++++.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 444455555555444
No 312
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=27.67 E-value=2.6e+02 Score=23.09 Aligned_cols=109 Identities=10% Similarity=-0.092 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011102 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPAYRVVI 412 (493)
Q Consensus 333 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~ty~~li 412 (493)
++..+-...+.++++.|+.+....+...+. .++...=...+.++.+.+.. ++...+.++... +|...=...+
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~ 159 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIKALK----DEDWFVRIAAAFALGEIGDE-RAVEPLIKALKD---EDGWVRQSAA 159 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTTC---SSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHcC---CCHHHHHHHH
Confidence 344444455555555554332222222221 34444444444555554442 233333333322 4444445555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 011102 413 KLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMAS 453 (493)
Q Consensus 413 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~ 453 (493)
.++.+.|.- ++...+..+.+. ++...-...+.++.+.
T Consensus 160 ~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 160 DALGEIGGE-RVRAAMEKLAET---GTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHCSH-HHHHHHHHHHHH---CCHHHHHHHHHHHHHC
T ss_pred HHHHHhCch-hHHHHHHHHHhC---CCHHHHHHHHHHHHHH
Confidence 555555543 344444444422 3444444445555443
No 313
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=27.61 E-value=2.4e+02 Score=22.57 Aligned_cols=45 Identities=7% Similarity=-0.158 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011102 353 VVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNME 397 (493)
Q Consensus 353 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~ 397 (493)
++..++.++.+.+-.-....+--|--|+.+.|++++|.+..+.+.
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444444433211122333334444555555555555554444
No 314
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.11 E-value=1.4e+02 Score=24.75 Aligned_cols=49 Identities=4% Similarity=-0.097 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH------HHHcCCCHHHHHHHHHHHH
Q 011102 349 QKFGVVESLFHWFTHSGRDP--TVVMYTTLIH------SRLSEKKCREALTVVWNME 397 (493)
Q Consensus 349 g~~~~A~~l~~~m~~~g~~p--~~~ty~~li~------~~~~~g~~~~A~~l~~~M~ 397 (493)
|++-+|.++|++.....-.+ ....|..||+ -..+.|+...|..++.+..
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66666666666665444344 3444555555 1123466666666666543
No 315
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=26.77 E-value=4.1e+02 Score=25.11 Aligned_cols=70 Identities=9% Similarity=0.025 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCCCHHH
Q 011102 337 DCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKK--CREALTVVWNMEASNCLFDLPA 407 (493)
Q Consensus 337 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~--~~~A~~l~~~M~~~gi~pd~~t 407 (493)
..+.+|.-|...|+.++|.+.++++..-... ..+.+.++..++-+.++ .+...+++..+...|+-+....
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 3577888888888888888888888721111 23445666666666443 4567778887777766544333
No 316
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=26.75 E-value=2e+02 Score=21.56 Aligned_cols=57 Identities=11% Similarity=0.070 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHCCCCCCHHHHHHH
Q 011102 388 EALTVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKL-----KEAGFCPTYDIYRDM 446 (493)
Q Consensus 388 ~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m-----~~~g~~p~~~ty~~l 446 (493)
.|.++.++...-|+.|+.....-++..|...+. + |.++.++. ...|..|+..+.+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 456666677777888888777777777766664 2 33322221 245777776665544
No 317
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=26.19 E-value=1.7e+02 Score=26.67 Aligned_cols=189 Identities=12% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHH--HHHHH
Q 011102 267 EATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCT--AIMKV 344 (493)
Q Consensus 267 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~--~li~~ 344 (493)
.+-+...++.|+.+....++......--..|..-.+.|..+.... . .++++.+.+. |..++..... +.+..
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g-~-----~~~v~~Ll~~-g~~~~~~~~~g~t~L~~ 97 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYN-R-----VRIVQLLLQH-GADVHAKDKGGLVPLHN 97 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTT-C-----HHHHHHHHHT-TCCTTCCCTTCCCHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcC-C-----HHHHHHHHHc-CCCCCccCCCCCcHHHH
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHcCCCHHHHHHHHHHHHHCCCCCC------------------
Q 011102 345 GIRLQKFGVVESLFHWFTHSGRDPTVVMYT--TLIHSRLSEKKCREALTVVWNMEASNCLFD------------------ 404 (493)
Q Consensus 345 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~--~li~~~~~~g~~~~A~~l~~~M~~~gi~pd------------------ 404 (493)
.+..|+.+ +++.+.+.|..++..... +.+...+..|+ .++++.+.+.|..|+
T Consensus 98 A~~~g~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~ 169 (351)
T 3utm_A 98 ACSYGHYE----VTELLLKHGACVNAMDLWQFTPLHEAASKNR----VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPEL 169 (351)
T ss_dssp HHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHH
T ss_pred HHHCCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCCccccCCCCcchHHHhhhhh
Q ss_pred ------HHHHHHHHHHHHHcCCHH-------------------------------HHHHHHHHHHHCCCCCCHHHH--HH
Q 011102 405 ------LPAYRVVIKLFVALNDIS-------------------------------RAIRYFSKLKEAGFCPTYDIY--RD 445 (493)
Q Consensus 405 ------~~ty~~li~~~~~~g~~~-------------------------------~A~~~~~~m~~~g~~p~~~ty--~~ 445 (493)
......++.+....+... .-.++.+.+.+.|..++.... .+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 249 (351)
T 3utm_A 170 RERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMT 249 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred HHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCC
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCccC
Q 011102 446 MIRIFMASGRLAKCRDVCKEAEMAGFKLD 474 (493)
Q Consensus 446 li~~~~~~g~~~~A~~l~~~m~~~g~~pd 474 (493)
.+...++.|+. ++++.+.+.|..++
T Consensus 250 ~L~~A~~~g~~----~~v~~Ll~~ga~~n 274 (351)
T 3utm_A 250 PLHVAAERAHN----DVMEVLHKHGAKMN 274 (351)
T ss_dssp HHHHHHHTTCH----HHHHHHHHTTCCTT
T ss_pred HHHHHHHcCCH----HHHHHHHHCCCCCC
No 318
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.13 E-value=1.7e+02 Score=27.39 Aligned_cols=62 Identities=11% Similarity=-0.025 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhc
Q 011102 266 LEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQR 328 (493)
Q Consensus 266 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~ 328 (493)
...++.-|...|++++|.+.++++...... ...+...+..++-+....-+.+..++..+.+.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~ 75 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCA 75 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHC
Confidence 457888888889999999888887542211 22334444444444312335556777777665
No 319
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=25.94 E-value=2.7e+02 Score=22.70 Aligned_cols=52 Identities=12% Similarity=0.101 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 011102 351 FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFD 404 (493)
Q Consensus 351 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd 404 (493)
.+.+..+++.+.+.|..-|..--.+.+....+.| .....+-.++.++||..+
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~~ 97 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISRE 97 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCHH
Confidence 4556677777777777666655556666666544 234566777778888544
No 320
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=25.81 E-value=1.6e+02 Score=21.50 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=28.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 011102 391 TVVWNMEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLA 457 (493)
Q Consensus 391 ~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 457 (493)
.+++.+.+.|+- +..-+..+-. .....++|.++++.+..+| ...|..+++++...|...
T Consensus 26 ~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 26 YIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHHH
Confidence 344455554442 2333333322 1445566666666665443 335666666666655433
No 321
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Probab=25.68 E-value=4.1e+02 Score=24.70 Aligned_cols=193 Identities=11% Similarity=-0.013 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCH-----HHHH
Q 011102 265 VLEATAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQ-----QDCT 339 (493)
Q Consensus 265 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~-----~~~~ 339 (493)
-|..++-++...---.+|..+.+.|+..| .|..++.-++.. +.+.++....+.|+.+-.. .+.-++ ..|-
T Consensus 82 ~f~~ll~~l~~~~~~~DA~~L~~A~~g~G--tde~~lieIL~t--Rs~~ql~~i~~~Y~~~yg~-sLe~dI~~e~sG~~~ 156 (327)
T 1w3w_A 82 KFERLIVALMYPPYRYEAKELHDAMKGLG--TKEGVIIEILAS--RTKNQLREIMKAYEEDYGS-SLEEDIQADTSGYLE 156 (327)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHHHHHSSS--CCHHHHHHHHHH--SCHHHHHHHHHHHHHHHSS-CHHHHHHHHCCHHHH
T ss_pred cHHHHHHHhcCCHHHHHHHHHHHHhhccC--CCHHHHHHHHHh--CCHHHHHHHHHHHHHHhCc-cHHHHHhhccCchHH
Confidence 46667777777666788999999888544 677665554432 2212344444555444322 121111 1355
Q ss_pred HHHHHHHHcCCH------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH-
Q 011102 340 AIMKVGIRLQKF------------GVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLP- 406 (493)
Q Consensus 340 ~li~~~~~~g~~------------~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~- 406 (493)
.++-++.++.+. .+|..+++.|.. |.-.|..++..++.. ....++....+-|+++-...+.-.+.
T Consensus 157 ~~L~~lv~~~r~~~~~~vd~~~a~~DA~~L~~A~~~-~~GTde~~lirIl~t-Rs~~~L~~i~~~Y~~~~g~~L~~~I~~ 234 (327)
T 1w3w_A 157 RILVCLLQGSRDDVSSFVDPALALQDAQDLYAAGEK-IRGTDEMKFITILCT-RSATHLLRVFEEYEKIANKSIEDSIKS 234 (327)
T ss_dssp HHHHHHHSCCCCCCCSCCCHHHHHHHHHHHHHHHHC-SSSCCHHHHHHHHHH-SCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHhccCCcccccCHHHHHHHHHHHHHHhhC-cCCCcHhHhhHHHhc-CCHHHHHHHHHHHHHHHCCCHHHHHhh
Confidence 666666655432 248888888873 223466555555532 11123444455555443322211110
Q ss_pred ----HHHHHHH---HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 407 ----AYRVVIK---LFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 407 ----ty~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
-|-.++. .|.+..-.--|..+.+.|+..| .|..+..-+|-. ...-+.....+-|+++-
T Consensus 235 e~sGd~~~~Llalv~~~~~~~~~fA~~L~~amkg~G--Tdd~~Liriivs-R~e~dl~~Ik~~y~~~y 299 (327)
T 1w3w_A 235 ETHGSLEEAMLTVVKCTQNLHSYFAERLYYAMKGAG--TRDGTLIRNIVS-RSEIDLNLIKCHFKKMY 299 (327)
T ss_dssp HCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSSSS--CCHHHHHHHHHH-HTTTTHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHcCCHHHHHHHHHHhhccCCC--CChhHeeeeeeE-CCHHHHHHHHHHHHHHh
Confidence 1222222 2333333445777888887444 455444333322 12245666666676654
No 322
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=25.60 E-value=3.2 Score=41.55 Aligned_cols=103 Identities=16% Similarity=0.064 Sum_probs=66.4
Q ss_pred CCCCHHHHHHHHhhhcccCcHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCchhhhHHHhh
Q 011102 179 SHKDVAEVLDKCGRFLRKGSLSFTVRELGHMNLPERALQTFCWAQKQPHLFPDDRLLASTVEVLARHHELKVPFKLENFV 258 (493)
Q Consensus 179 ~~~~~~~a~~~~~~m~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~li~~~~~~g~~~~~~~l~~~~ 258 (493)
..+.+.+|++.|-+..+...|..+|.+..+.|.+++-+..+...++. .-.| ..=+.|+-+|++.+++.. ++.|.
T Consensus 66 ~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~--~IDteLi~ayAk~~rL~e---lEefl 139 (624)
T 3lvg_A 66 QKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARES--YVETELIFALAKTNRLAE---LEEFI 139 (624)
T ss_dssp TSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCST--TTTHHHHHHHHTSCSSST---TTSTT
T ss_pred ccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hccc--ccHHHHHHHHHhhCcHHH---HHHHH
Confidence 34566666666666667778889999999999999988888765543 2233 333789999999988643 33345
Q ss_pred ccCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011102 259 SLASKGVLEATAKGFVKGGNLKLAWKLLM 287 (493)
Q Consensus 259 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 287 (493)
..++..-...+-+-|...|.++.|.-+|.
T Consensus 140 ~~~N~A~iq~VGDrcf~e~lYeAAKilys 168 (624)
T 3lvg_A 140 NGPNNAHIQQVGDRCYDEKMYDAAKLLYN 168 (624)
T ss_dssp SCCSSSCTHHHHHHHHHSCCSTTSSTTGG
T ss_pred cCCCcccHHHHHHHHHHccCHHHHHHHHH
Confidence 55544434444555555555555544444
No 323
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.48 E-value=1.9e+02 Score=23.36 Aligned_cols=14 Identities=0% Similarity=0.005 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHC
Q 011102 386 CREALTVVWNMEAS 399 (493)
Q Consensus 386 ~~~A~~l~~~M~~~ 399 (493)
.-.|.++++.+++.
T Consensus 42 ~~sa~ei~~~l~~~ 55 (150)
T 2xig_A 42 HLSPEEITHSIRQK 55 (150)
T ss_dssp CBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 33344444444333
No 324
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.45 E-value=1.1e+02 Score=27.03 Aligned_cols=51 Identities=14% Similarity=0.051 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 011102 388 EALTVVWNMEASNCLFDL-PAYRVVIKLFVALNDISRAIRYFSKLKEAGFCP 438 (493)
Q Consensus 388 ~A~~l~~~M~~~gi~pd~-~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 438 (493)
++.++|..|..+||--.. .-|...-..+...|++.+|..+|+.=++.+-+|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444555555555443222 234444444445555555555555554444444
No 325
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=25.06 E-value=2.7e+02 Score=22.49 Aligned_cols=71 Identities=3% Similarity=-0.068 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccCH
Q 011102 403 FDLPAYRVVIKLFVALND---ISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEMAGFKLDK 475 (493)
Q Consensus 403 pd~~ty~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 475 (493)
|+..|--..--++.+..+ ..++..+++++...+-.-.....-.|.-++.+.|++++|.+..+.+.+ +.|+-
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 444444444444555443 345666666666433221233334455667777777777777777765 45543
No 326
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.96 E-value=68 Score=27.54 Aligned_cols=184 Identities=8% Similarity=-0.014 Sum_probs=92.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhcCCCCHHHHHHHHHHHhhcCC---CCCCHHHHHHHH
Q 011102 269 TAKGFVKGGNLKLAWKLLMVAKDGGRMLDPS---IYAKLILELGKNPDKYMLVMTLLDELGQRDD---LNLSQQDCTAIM 342 (493)
Q Consensus 269 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g---~~p~~~~~~~li 342 (493)
.+..-++.|+.+.+..+++. .|..++.. -++ .+...+.. |+.+-+..+++.-..... ...|..-++ .+
T Consensus 6 ~L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t-~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t-~L 79 (232)
T 2rfa_A 6 PLLLAAKENDVQALSKLLKF---EGCEVHQRGAMGET-ALHIAALY-DNLEAAMVLMEAAPELVFEPMTSELYEGQT-AL 79 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCC-HHHHHHHT-TCHHHHHHHHHHCGGGGGCCCCSTTTTTCC-HH
T ss_pred HHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCC-HHHHHHHc-CCHHHHHHHHHcCchhccccccccCCCCcC-HH
Confidence 34445666776655555442 24333322 222 33444455 666666666554221100 011112223 33
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHH---------------HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH
Q 011102 343 KVGIRLQKFGVVESLFHWFTHSGRDPTVVM---------------YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPA 407 (493)
Q Consensus 343 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---------------y~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~t 407 (493)
...+..|+.+- ++.+.+.|..++... -.+.+...+..|+.+-+ +.+.+.|..++...
T Consensus 80 ~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~ga~~~~~d 151 (232)
T 2rfa_A 80 HIAVINQNVNL----VRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIV----RLLIEHGADIRAQD 151 (232)
T ss_dssp HHHHHTTCHHH----HHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHH----HHHHHTTCCTTCCC
T ss_pred HHHHHcCCHHH----HHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCCC
Confidence 44456677554 444445566655421 12334444555665444 34445566554321
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011102 408 --YRVVIKLFVALNDISRAIRYFSKLKEAGFCP---------TYDIYRDMIRIFMASGRLAKCRDVCKEAE 467 (493)
Q Consensus 408 --y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---------~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 467 (493)
-.+.+...+..|+.+-+..+++.+.+.|..+ |..-++. +..-++.|+.+-+..+++.=.
T Consensus 152 ~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 152 SLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp TTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcCc
Confidence 2345666677888888888888888777543 3333333 344456677766655555443
No 327
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.94 E-value=51 Score=28.34 Aligned_cols=153 Identities=14% Similarity=0.030 Sum_probs=80.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHH
Q 011102 303 KLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTV---VMYTTLIHS 379 (493)
Q Consensus 303 ~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~ty~~li~~ 379 (493)
+.+...++. |+++....+++.-... -...|...++. +...++.|+.+-+ +.+.+.|..++. ..++.| ..
T Consensus 8 ~~l~~A~~~-g~~~~v~~ll~~~~~~-~~~~~~~g~t~-L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L-~~ 79 (231)
T 3aji_A 8 IMICNLAYS-GKLDELKERILADKSL-ATRTDQDSRTA-LHWACSAGHTEIV----EFLLQLGVPVNDKDDAGWSPL-HI 79 (231)
T ss_dssp SHHHHHHHH-TCHHHHHHHHHHCGGG-GGCCCTTSCCH-HHHHHHHTCHHHH----HHHHHTTCCSCCCCTTSCCHH-HH
T ss_pred chHHHHHHh-CCHHHHHHHHHhchhh-hhcCCCCCCCH-HHHHHHcCcHHHH----HHHHHhCCCCCCcCCCCCCHH-HH
Confidence 345566667 8888888888764322 11233333344 4445567776544 444556665543 223334 44
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCC
Q 011102 380 RLSEKKCREALTVVWNMEASNCLFDLPA--YRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDIY--RDMIRIFMASGR 455 (493)
Q Consensus 380 ~~~~g~~~~A~~l~~~M~~~gi~pd~~t--y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty--~~li~~~~~~g~ 455 (493)
.+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+. .+.+.|..++.... .+.+...+..|+
T Consensus 80 A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 151 (231)
T 3aji_A 80 AASAGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV----MLLEGGANPDAKDHYDATAMHRAAAKGN 151 (231)
T ss_dssp HHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHcCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 45556654 4444555666554322 234455556677766444 44456666554321 234444556677
Q ss_pred HHHHHHHHHHHHHCCCccCH
Q 011102 456 LAKCRDVCKEAEMAGFKLDK 475 (493)
Q Consensus 456 ~~~A~~l~~~m~~~g~~pd~ 475 (493)
.+-+ +.+.+.|..++.
T Consensus 152 ~~~v----~~Ll~~g~~~~~ 167 (231)
T 3aji_A 152 LKMV----HILLFYKASTNI 167 (231)
T ss_dssp HHHH----HHHHHTTCCSCC
T ss_pred HHHH----HHHHhcCCCccc
Confidence 6544 444556766653
No 328
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.66 E-value=49 Score=27.65 Aligned_cols=15 Identities=20% Similarity=0.178 Sum_probs=6.9
Q ss_pred HHHHHHHHHCCCccC
Q 011102 460 RDVCKEAEMAGFKLD 474 (493)
Q Consensus 460 ~~l~~~m~~~g~~pd 474 (493)
.++++.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 344444445554443
No 329
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=24.41 E-value=1.8e+02 Score=22.92 Aligned_cols=61 Identities=15% Similarity=0.056 Sum_probs=33.3
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011102 360 WFTHSGRDPTVVMYTTLIHSRLSEK-KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDI 421 (493)
Q Consensus 360 ~m~~~g~~p~~~ty~~li~~~~~~g-~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~ 421 (493)
.|++.|.+++..= -.++..+...+ ..-.|.++++.+++.+...+..|.--.|+.+...|-+
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3555666655432 23444455444 5566777777776665555555555555555555544
No 330
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=24.40 E-value=73 Score=27.06 Aligned_cols=183 Identities=10% Similarity=-0.047 Sum_probs=82.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 011102 269 TAKGFVKGGNLKLAWKLLMVAKDGGRMLDPSIY--AKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGI 346 (493)
Q Consensus 269 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~--~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~ 346 (493)
.+...++.|+.+-+..+ .+.|..++.... .+.+...+.. |..+-+..+++.-... --..+....+. +...+
T Consensus 28 ~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~-~~~~~~~g~t~-L~~A~ 100 (223)
T 2f8y_A 28 ALHLAARYSRSDAAKRL----LEASADANIQDNMGRTPLHAAVSA-DAQGVFQILIRNRATD-LDARMHDGTTP-LILAA 100 (223)
T ss_dssp HHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHBTTSC-TTCCCTTCCCH-HHHHH
T ss_pred hHHHHHHcCCHHHHHHH----HHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCC-cccCCCCCCcH-HHHHH
Confidence 44455667776544444 445654443211 1233444455 6665555444422111 00112222233 33344
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHH
Q 011102 347 RLQKFGVVESLFHWFTHSGRDPTVVM--YTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPA--YRVVIKLFVALNDIS 422 (493)
Q Consensus 347 ~~g~~~~A~~l~~~m~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~t--y~~li~~~~~~g~~~ 422 (493)
+.|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+.- +.+.|..++... -.+.+...++.|+.+
T Consensus 101 ~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 172 (223)
T 2f8y_A 101 RLAVEG----MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV----LLKNGANKDMQNNREETPLFLAAREGSYE 172 (223)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred HhCcHH----HHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHH----HHHcCCCCCCcCCCCcCHHHHHHHcCCHH
Confidence 566655 4444445666554322 1233444455666554443 444565554321 123344445667765
Q ss_pred HHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCccC
Q 011102 423 RAIRYFSKLKEAGFCPTYDIY--RDMIRIFMASGRLAKCRDVCKEAEMAGFKLD 474 (493)
Q Consensus 423 ~A~~~~~~m~~~g~~p~~~ty--~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 474 (493)
-+. .+.+.|..++.... .+-+...++.|+.+ +++.+.+.|...+
T Consensus 173 ~v~----~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~----i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 173 TAK----VLLDHFANRDITDHMDRLPRDIAQERMHHD----IVRLLDEYNLVRS 218 (223)
T ss_dssp HHH----HHHHTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCSSC
T ss_pred HHH----HHHHcCCCCccccccCCCHHHHHHHhcchH----HHHHHHHcCCCcc
Confidence 444 44455555443211 12334445566554 4444555665544
No 331
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=24.01 E-value=3.4e+02 Score=23.21 Aligned_cols=66 Identities=9% Similarity=0.118 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 296 LDPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWF 361 (493)
Q Consensus 296 pd~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 361 (493)
.+..-+..++..+......-..+..+|+.+...+.-..+..-|..++..+.+...-+....+|+.+
T Consensus 82 Is~~ef~~~l~~~~~~~~~~~~~~~lf~~~D~d~~G~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~ 147 (229)
T 3dd4_A 82 VNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLY 147 (229)
T ss_dssp CCHHHHHHHHHHHSCSSSHHHHHHHHHHTTCSSCCSSCCHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHCCCCCcHHHHHHHHHHcCCCCCCeEeHHHHHHHHHHHcCCChHHHHHHHHHHh
Confidence 455555566655543312233445666666544333455555555555555444445555566555
No 332
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=23.48 E-value=2.9e+02 Score=22.30 Aligned_cols=66 Identities=8% Similarity=-0.185 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011102 333 LSQQDCTAIMKVGIRLQK---FGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEA 398 (493)
Q Consensus 333 p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~ 398 (493)
|+..+--..-.++.+..+ ..++..+++++...+-.-.....--|--|+.+.|++++|.+..+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444444444443 334555555554432211222333344455555555555555555544
No 333
>2ab9_A Pro-SFTI-1; protein, beta-sheet, random coil, hydrolase inhibitor; NMR {Helianthus annuus}
Probab=23.21 E-value=24 Score=19.29 Aligned_cols=13 Identities=23% Similarity=0.122 Sum_probs=10.7
Q ss_pred Ccccccccceeee
Q 011102 2 NCTLSYMSLHPVV 14 (493)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (493)
.||-|-|++||+-
T Consensus 16 rctksippicfpd 28 (31)
T 2ab9_A 16 RCTKSIPPICFPD 28 (31)
T ss_dssp SCCSSSSCSSSSC
T ss_pred eecccCCCcccCC
Confidence 3788999999975
No 334
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.92 E-value=2.3e+02 Score=23.41 Aligned_cols=52 Identities=6% Similarity=-0.088 Sum_probs=38.5
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHHcCCHHHHHHHHHHHH
Q 011102 381 LSEKKCREALTVVWNMEASNCLF--DLPAYRVVIK-L-----FVALNDISRAIRYFSKLK 432 (493)
Q Consensus 381 ~~~g~~~~A~~l~~~M~~~gi~p--d~~ty~~li~-~-----~~~~g~~~~A~~~~~~m~ 432 (493)
...|++-+|-++|++.....-.+ +...|..||. . ..+.|+...|..++.+-.
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34488999999999887765555 5567777777 2 345788888888888765
No 335
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=22.76 E-value=33 Score=30.76 Aligned_cols=188 Identities=12% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------CHHHHHHHHHHHhc--CCCCHHHHHHHHHH----------Hhh
Q 011102 267 EATAKGFVKGGNLKLAWKLLMVAKDGGRML-------DPSIYAKLILELGK--NPDKYMLVMTLLDE----------LGQ 327 (493)
Q Consensus 267 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-------d~~t~~~li~~~~~--~~~~~~~a~~l~~~----------m~~ 327 (493)
.+.+...++.|+.+.+..+++...+.+... |..-++.|..++.. . |..+-+..+++. +..
T Consensus 14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~-g~~~~v~~Ll~~ga~~~~~~~~i~~ 92 (273)
T 2pnn_A 14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHN-GQNDTIALLLDVARKTDSLKQFVNA 92 (273)
T ss_dssp HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBT-TBCHHHHHHHHHHHHTTCHHHHHTC
T ss_pred chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhc-CChHHHHHHHHhhccccchhHHhhc
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH----------------HHHHHHHHHcCCCHHHHHH
Q 011102 328 RDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVM----------------YTTLIHSRLSEKKCREALT 391 (493)
Q Consensus 328 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----------------y~~li~~~~~~g~~~~A~~ 391 (493)
. -...|..-++.|..+..... .++.+.+.+.|..++... -.+.+...+..|+. +
T Consensus 93 ~-~~~~d~~g~tpL~~A~~~g~-----~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~----~ 162 (273)
T 2pnn_A 93 S-YTDSYYKGQTALHIAIERRN-----MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL----A 162 (273)
T ss_dssp C-CCSTTTTTCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCH----H
T ss_pred c-cccccCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCH----H
Q ss_pred HHHHHHH---CCCCCCHHHHH--HHHHHHHHcCC-----HHHHHHHHHHHHHCCCCCC---------HHHHHHHHHHHHH
Q 011102 392 VVWNMEA---SNCLFDLPAYR--VVIKLFVALND-----ISRAIRYFSKLKEAGFCPT---------YDIYRDMIRIFMA 452 (493)
Q Consensus 392 l~~~M~~---~gi~pd~~ty~--~li~~~~~~g~-----~~~A~~~~~~m~~~g~~p~---------~~ty~~li~~~~~ 452 (493)
+++.+.+ .|..++..... +.+...+..|+ .+...++++.+.+.|..++ ...-.+-+..-++
T Consensus 163 ~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~ 242 (273)
T 2pnn_A 163 IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAAS 242 (273)
T ss_dssp HHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred HHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHH
Q ss_pred cCCHHHHHHHHHH
Q 011102 453 SGRLAKCRDVCKE 465 (493)
Q Consensus 453 ~g~~~~A~~l~~~ 465 (493)
.|+.+-+..+++.
T Consensus 243 ~g~~~iv~~Ll~~ 255 (273)
T 2pnn_A 243 SGKIGVLAYILQR 255 (273)
T ss_dssp TTCHHHHHHHHHH
T ss_pred hChHHHHHHHHHC
No 336
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.65 E-value=1.7e+02 Score=23.53 Aligned_cols=20 Identities=0% Similarity=0.061 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHCCCCCCHHH
Q 011102 388 EALTVVWNMEASNCLFDLPA 407 (493)
Q Consensus 388 ~A~~l~~~M~~~gi~pd~~t 407 (493)
.|.++++.+++.+...+..|
T Consensus 35 ta~ei~~~l~~~~~~is~~T 54 (145)
T 3eyy_A 35 TPDDILGEVRKTASGINIST 54 (145)
T ss_dssp CHHHHHHHHHTTCTTCCHHH
T ss_pred CHHHHHHHHHhhCCCCCHhH
Confidence 44444444444333333333
No 337
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=22.52 E-value=3.9e+02 Score=23.30 Aligned_cols=65 Identities=9% Similarity=0.116 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011102 297 DPSIYAKLILELGKNPDKYMLVMTLLDELGQRDDLNLSQQDCTAIMKVGIRLQKFGVVESLFHWF 361 (493)
Q Consensus 297 d~~t~~~li~~~~~~~~~~~~a~~l~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 361 (493)
+..-+..++..+.........+..+|..+...+.-..+..-|..++..+......++...+|+.+
T Consensus 110 ~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~ 174 (256)
T 2jul_A 110 DEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLY 174 (256)
T ss_dssp EHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 34444444444432212334555666665443222233333333333333222233444444443
No 338
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=22.44 E-value=41 Score=31.64 Aligned_cols=212 Identities=10% Similarity=-0.024 Sum_probs=96.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCCCHHH--HHHHHHHHHHcCCCchhhhHHHhhccCcHHHHHHHHHHHHhcCC
Q 011102 201 FTVRELGHMNLPERALQTFCWAQKQPHLFPDDRL--LASTVEVLARHHELKVPFKLENFVSLASKGVLEATAKGFVKGGN 278 (493)
Q Consensus 201 ~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t--~~~li~~~~~~g~~~~~~~l~~~~~~~~~~~~~~li~~~~~~g~ 278 (493)
+.|...+..|+.+.+..+++ . |..++... -.+.+...+..|..+..+.+.......+...-.+.+..-+..|+
T Consensus 22 t~L~~Aa~~g~~~~v~~Ll~----~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~ 96 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRLIE----T-GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANK 96 (364)
T ss_dssp HHHHHHHHHTCHHHHHHHHH----T-TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHH----c-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCC
Confidence 33444455666655555443 2 33332211 11233444455665555554333322221111234444556788
Q ss_pred HHHHHHHHHHHHhCCCCCCHH--------------------HHHHHHHHHhcCCC--CHHHHHHHHHHHhhcCCCCCCH-
Q 011102 279 LKLAWKLLMVAKDGGRMLDPS--------------------IYAKLILELGKNPD--KYMLVMTLLDELGQRDDLNLSQ- 335 (493)
Q Consensus 279 ~~~A~~l~~~m~~~g~~pd~~--------------------t~~~li~~~~~~~~--~~~~a~~l~~~m~~~~g~~p~~- 335 (493)
.+-+..+++.-...|..++.. -++.| ...+.. | ..+-+..+++. |..++.
T Consensus 97 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~-g~~~~~~v~~Ll~~-----ga~~~~~ 169 (364)
T 3ljn_A 97 TDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTAL-HWCVGL-GPEYLEMIKILVQL-----GASPTAK 169 (364)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHH-HHHHHS-CGGGHHHHHHHHHH-----TCCTTCC
T ss_pred HHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHH-HHHHHc-CCchHHHHHHHHHc-----CCCCccc
Confidence 877777777655555444331 12233 334444 5 44444444433 232222
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH--
Q 011102 336 --QDCTAIMKVGIRLQKFGVVESLFHWFTH-SGRDPT---VVMYTTLIHSRLSEKKCREALTVVWNMEASNCLFDLPA-- 407 (493)
Q Consensus 336 --~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi~pd~~t-- 407 (493)
.-.+ .+...+..|+.+-+..+++.-.. .+..++ ..-++. +...+..|+.+-+ +.+.+.|..++...
T Consensus 170 d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v----~~Ll~~gad~~~~d~~ 243 (364)
T 3ljn_A 170 DKADET-PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH-LHWAILINWEDVA----MRFVEMGIDVNMEDNE 243 (364)
T ss_dssp CTTSCC-HHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCT-THHHHTTTCHHHH----HHHHTTTCCTTCCCTT
T ss_pred CCCCCC-HHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcH-HHHHHHcCCHHHH----HHHHHcCCCCCCCCCC
Confidence 1223 34444567777655555543211 000022 222233 3344566665543 34445666554322
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 011102 408 YRVVIKLFVALNDISRAIRYFSK 430 (493)
Q Consensus 408 y~~li~~~~~~g~~~~A~~~~~~ 430 (493)
-.+-+...++.|+.+-+..+++.
T Consensus 244 g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 244 HTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp SCCHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHhChHHHHHHHHHc
Confidence 12344555667887777666664
No 339
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=21.81 E-value=1.6e+02 Score=24.18 Aligned_cols=31 Identities=6% Similarity=-0.047 Sum_probs=13.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011102 338 CTAIMKVGIRLQKFGVVESLFHWFTHSGRDP 368 (493)
Q Consensus 338 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 368 (493)
|-..-..+-..|++.+|.++|+.=.+.+-.|
T Consensus 104 Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 104 YIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3333444444444444444444444443333
No 340
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.46 E-value=84 Score=27.57 Aligned_cols=118 Identities=10% Similarity=-0.074 Sum_probs=64.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHH--cCCCHHHHHHHHHHHHHCCC---------C
Q 011102 341 IMKVGIRLQKFGVVESLFHWFTHSGRDPTVVM-------YTTLIHSRL--SEKKCREALTVVWNMEASNC---------L 402 (493)
Q Consensus 341 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------y~~li~~~~--~~g~~~~A~~l~~~M~~~gi---------~ 402 (493)
.+...++.|+.+....+++.+.+.|..++... ++.|..+.. +.|+.+-+.-+++.-...+. .
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 34455677888888888887777776666433 345555542 56777766666665433111 0
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH----------------HHHHHHHHHHcCCHHHHHHHH
Q 011102 403 F-DLPAYRVVIKLFVALNDISRAIRYFSKLKEAGFCPTYDI----------------YRDMIRIFMASGRLAKCRDVC 463 (493)
Q Consensus 403 p-d~~ty~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------------y~~li~~~~~~g~~~~A~~l~ 463 (493)
. |.. -.+.+...+..|+.+-+.. +.+.|..++... -.+.+..-+..|+.+-+..++
T Consensus 88 ~~d~~-g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 88 DVYYR-GQTALHIAIERRCKHYVEL----LVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp CSSEE-SBCHHHHHHHTTCHHHHHH----HHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred ccccC-CCCHHHHHHHcCCHHHHHH----HHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 0 001 1234445566787664444 445666655442 123344445677765444443
No 341
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=20.99 E-value=4.5e+02 Score=23.53 Aligned_cols=137 Identities=12% Similarity=0.079 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC------------CCCHHHHHHHHHHHH
Q 011102 350 KFGVVESLFHWF-THSGRDPTVVMYTTLIHSRLSEKKCREALTVVWNMEASNC------------LFDLPAYRVVIKLFV 416 (493)
Q Consensus 350 ~~~~A~~l~~~m-~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~gi------------~pd~~ty~~li~~~~ 416 (493)
..++..+++... .+.|+..+......++... .|+...+..+++.....+- .+.......++.+..
T Consensus 170 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~--~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~ 247 (327)
T 1iqp_A 170 RDEDIAKRLRYIAENEGLELTEEGLQAILYIA--EGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMMLLAL 247 (327)
T ss_dssp CHHHHHHHHHHHHHTTTCEECHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCSEECHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_pred HcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHH---HHCCCccCHHHHHHHHHhhhhcc
Q 011102 417 ALNDISRAIRYFSKLK-EAGFCPTYDIYRDMIRIF---MASGRLAKCRDVCKEA---EMAGFKLDKQTVVELLQIEKESR 489 (493)
Q Consensus 417 ~~g~~~~A~~~~~~m~-~~g~~p~~~ty~~li~~~---~~~g~~~~A~~l~~~m---~~~g~~pd~~t~~~Ll~~~~~~r 489 (493)
. ++++.|.+.+..+. ..|..|........-... .....+.++.+.+.+. .+.|..|....-..+++++....
T Consensus 248 ~-~~~~~~~~~~~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~~~~ 326 (327)
T 1iqp_A 248 K-GNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLVEGANEIIQLEALLAQFTLIGK 326 (327)
T ss_dssp H-TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGSSSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred c-CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
No 342
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.46 E-value=65 Score=29.79 Aligned_cols=14 Identities=21% Similarity=0.714 Sum_probs=8.5
Q ss_pred cchhHHHHHhhhcC
Q 011102 99 ESEELEAISSLFQG 112 (493)
Q Consensus 99 ~~~~~~~a~~lf~~ 112 (493)
..|.++.+..|.+.
T Consensus 34 ~~g~~~~V~~LL~~ 47 (337)
T 4g8k_A 34 QNEDVDLVQQLLEG 47 (337)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHC
Confidence 35666666666653
No 343
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.38 E-value=2.1e+02 Score=23.05 Aligned_cols=61 Identities=10% Similarity=0.010 Sum_probs=30.7
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011102 360 WFTHSGRDPTVVMYTTLIHSRLSEK-KCREALTVVWNMEASNCLFDLPAYRVVIKLFVALNDI 421 (493)
Q Consensus 360 ~m~~~g~~p~~~ty~~li~~~~~~g-~~~~A~~l~~~M~~~gi~pd~~ty~~li~~~~~~g~~ 421 (493)
.|.+.|+.++..= -.++..+...+ ..-.|.++++.+.+.+...+..|.--.|+.+...|-+
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3455565555432 22334444444 4555666666666655445555544444555555543
No 344
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=20.25 E-value=1.7e+02 Score=22.60 Aligned_cols=29 Identities=24% Similarity=0.078 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 011102 279 LKLAWKLLMVAKDGGRMLDPSIYAKLILELG 309 (493)
Q Consensus 279 ~~~A~~l~~~m~~~g~~pd~~t~~~li~~~~ 309 (493)
+..|+.-+++..+. .+|......++..+-
T Consensus 4 ~~~al~~L~e~~~~--~~~~~~~dg~i~~fe 32 (119)
T 1wty_A 4 LARAVERLKAALER--PKDEFIRDSAIQRFE 32 (119)
T ss_dssp HHHHHHHHHHHHSS--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHH
Confidence 34444444444332 234444444444433
No 345
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=20.08 E-value=4.4e+02 Score=23.04 Aligned_cols=122 Identities=14% Similarity=-0.048 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011102 333 LSQQDCTAIMKVGIRLQKFGVVESLFHWFTHSGRDPTVVMYTTLIHSRLSEK-KCREALTVVWNMEASNCLFDLPAYRVV 411 (493)
Q Consensus 333 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g-~~~~A~~l~~~M~~~gi~pd~~ty~~l 411 (493)
++..+-...+.++++.|+.+ +...+-.+.. .++...-...+.++.+.| ...++...+..+.+ .+|...-...
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A 212 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEA 212 (280)
T ss_dssp SCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHH
Confidence 45555555555555555532 2223322221 344444444444444443 12344444444433 2455555566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011102 412 IKLFVALNDISRAIRYFSKLKEAGFCPTYDIYRDMIRIFMASGRLAKCRDVCKEAEM 468 (493)
Q Consensus 412 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 468 (493)
+.++.+.|+......+...+.+ ++ .-...+.++.+.|.. ++...+.++.+
T Consensus 213 ~~aL~~~~~~~~~~~L~~~l~d----~~--vr~~a~~aL~~i~~~-~~~~~L~~~l~ 262 (280)
T 1oyz_A 213 IIGLSYRKDKRVLSVLCDELKK----NT--VYDDIIEAAGELGDK-TLLPVLDTMLY 262 (280)
T ss_dssp HHHHHHTTCGGGHHHHHHHHTS----SS--CCHHHHHHHHHHCCG-GGHHHHHHHHT
T ss_pred HHHHHHhCCHhhHHHHHHHhcC----cc--HHHHHHHHHHhcCch-hhhHHHHHHHh
Confidence 6667777754433333333332 22 123456666776763 55555555554
No 346
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.03 E-value=2.4e+02 Score=23.14 Aligned_cols=68 Identities=7% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcC
Q 011102 386 CREALTVVWN-MEASNCLFDLPAYRVVIKLFVALNDISRAIRYFSKLKEA--GFCPTYDIYRDMIRIFMASG 454 (493)
Q Consensus 386 ~~~A~~l~~~-M~~~gi~pd~~ty~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~ty~~li~~~~~~g 454 (493)
.+++++-+.+ +++.|++++..= ..++..+...+..-.|.++++.+.+. +...+..|----++.+...|
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Done!