Query 011103
Match_columns 493
No_of_seqs 132 out of 1401
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 08:09:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011103.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011103hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03167 Chaperonin-60 beta su 100.0 1E-100 3E-105 827.7 50.3 469 25-493 50-518 (600)
2 PRK12849 groEL chaperonin GroE 100.0 3E-100 7E-105 819.6 52.7 460 30-493 1-461 (542)
3 PRK00013 groEL chaperonin GroE 100.0 7E-100 2E-104 817.1 51.7 460 30-493 1-461 (542)
4 TIGR02348 GroEL chaperonin Gro 100.0 3E-99 7E-104 811.4 52.0 458 32-493 2-460 (524)
5 PRK12852 groEL chaperonin GroE 100.0 3.3E-99 7E-104 814.6 52.1 460 30-493 2-462 (545)
6 PTZ00114 Heat shock protein 60 100.0 3.7E-99 8E-104 815.1 51.3 464 27-493 10-477 (555)
7 PRK12850 groEL chaperonin GroE 100.0 4.5E-99 1E-103 811.9 51.8 460 30-493 2-462 (544)
8 cd03344 GroEL GroEL_like type 100.0 1.1E-98 2E-103 805.6 52.5 458 32-493 1-459 (520)
9 CHL00093 groEL chaperonin GroE 100.0 2E-98 4E-103 805.9 51.0 460 30-493 1-463 (529)
10 PRK12851 groEL chaperonin GroE 100.0 2.7E-98 6E-103 805.4 51.9 460 30-493 2-462 (541)
11 PRK14104 chaperonin GroEL; Pro 100.0 9.1E-98 2E-102 801.4 51.4 459 31-493 3-462 (546)
12 KOG0356 Mitochondrial chaperon 100.0 7.8E-92 1.7E-96 715.3 38.8 468 21-492 7-476 (550)
13 TIGR02339 thermosome_arch ther 100.0 1.4E-80 3E-85 669.0 43.8 390 40-493 15-454 (519)
14 TIGR02347 chap_CCT_zeta T-comp 100.0 2.3E-79 5.1E-84 658.5 44.9 390 40-493 15-460 (531)
15 cd03343 cpn60 cpn60 chaperonin 100.0 1.8E-79 4E-84 660.7 43.3 394 34-493 10-451 (517)
16 cd03339 TCP1_epsilon TCP-1 (CT 100.0 2.8E-79 6E-84 659.6 44.5 394 34-493 18-461 (526)
17 cd03335 TCP1_alpha TCP-1 (CTT 100.0 2.4E-79 5.3E-84 660.1 43.2 395 40-493 7-452 (527)
18 TIGR02343 chap_CCT_epsi T-comp 100.0 3.8E-79 8.1E-84 658.1 44.4 390 40-493 26-465 (532)
19 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 9E-80 1.9E-84 656.3 38.7 384 40-493 11-417 (484)
20 cd03340 TCP1_eta TCP-1 (CTT or 100.0 1.4E-78 3E-83 653.9 44.4 393 40-493 15-453 (522)
21 TIGR02344 chap_CCT_gamma T-com 100.0 1.1E-78 2.5E-83 655.0 43.3 390 40-493 15-455 (525)
22 TIGR02340 chap_CCT_alpha T-com 100.0 1.1E-78 2.4E-83 655.9 43.1 395 40-493 11-456 (536)
23 cd03338 TCP1_delta TCP-1 (CTT 100.0 1.6E-78 3.4E-83 652.9 41.8 392 40-493 7-450 (515)
24 TIGR02345 chap_CCT_eta T-compl 100.0 4.6E-78 1E-82 649.1 43.9 392 40-493 17-454 (522)
25 KOG0361 Chaperonin complex com 100.0 7.4E-79 1.6E-83 593.6 30.7 410 4-493 2-457 (543)
26 PTZ00212 T-complex protein 1 s 100.0 1.4E-77 3E-82 646.6 43.7 389 40-493 21-460 (533)
27 TIGR02342 chap_CCT_delta T-com 100.0 1.4E-77 3E-82 644.8 42.8 392 40-493 8-451 (517)
28 cd03337 TCP1_gamma TCP-1 (CTT 100.0 1.5E-77 3.2E-82 639.1 40.3 373 40-493 15-414 (480)
29 cd03336 TCP1_beta TCP-1 (CTT o 100.0 8.9E-77 1.9E-81 638.5 45.0 389 40-493 12-448 (517)
30 COG0459 GroL Chaperonin GroEL 100.0 2.4E-78 5.2E-83 643.0 27.7 433 30-493 2-449 (524)
31 TIGR02346 chap_CCT_theta T-com 100.0 8.8E-77 1.9E-81 639.5 38.5 389 40-493 17-452 (531)
32 TIGR02341 chap_CCT_beta T-comp 100.0 5.2E-75 1.1E-79 624.2 45.0 389 40-493 13-449 (519)
33 cd03341 TCP1_theta TCP-1 (CTT 100.0 5.4E-75 1.2E-79 618.2 41.7 378 36-493 4-404 (472)
34 cd00309 chaperonin_type_I_II c 100.0 8.1E-75 1.8E-79 617.3 42.5 377 34-493 3-400 (464)
35 KOG0358 Chaperonin complex com 100.0 4.2E-70 9.1E-75 531.5 27.3 396 40-493 25-468 (534)
36 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1.6E-68 3.5E-73 572.4 38.6 377 53-493 1-419 (485)
37 KOG0363 Chaperonin complex com 100.0 1.7E-65 3.8E-70 497.0 29.3 388 40-492 17-452 (527)
38 KOG0362 Chaperonin complex com 100.0 2.2E-63 4.8E-68 499.7 34.7 388 39-493 24-455 (537)
39 KOG0360 Chaperonin complex com 100.0 3.4E-63 7.4E-68 495.2 26.6 393 40-492 18-461 (545)
40 KOG0364 Chaperonin complex com 100.0 9.7E-61 2.1E-65 473.5 20.8 406 4-493 1-455 (527)
41 KOG0359 Chaperonin complex com 100.0 1.8E-57 3.9E-62 449.7 20.1 390 40-493 16-451 (520)
42 KOG0357 Chaperonin complex com 100.0 2.2E-53 4.8E-58 409.4 20.1 301 34-493 23-329 (400)
43 cd03333 chaperonin_like chaper 100.0 4.4E-28 9.5E-33 231.8 20.2 191 172-438 3-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 99.9 6.8E-27 1.5E-31 230.4 20.1 199 183-439 19-254 (261)
45 KOG0230 Phosphatidylinositol-4 99.2 1.4E-10 3E-15 131.6 13.3 206 184-448 334-577 (1598)
46 COG0459 GroL Chaperonin GroEL 97.4 0.00029 6.2E-09 76.3 7.1 88 263-366 260-354 (524)
47 TIGR02345 chap_CCT_eta T-compl 45.2 6 0.00013 43.2 -0.6 61 272-333 246-315 (522)
48 smart00574 POX domain associat 40.5 87 0.0019 27.9 6.0 45 416-460 84-129 (140)
49 PF07526 POX: Associated with 37.4 88 0.0019 27.9 5.7 44 417-460 85-129 (140)
50 PF01113 DapB_N: Dihydrodipico 36.7 1.1E+02 0.0023 26.3 6.2 42 250-293 70-111 (124)
51 PRK13600 putative ribosomal pr 34.6 1.7E+02 0.0037 23.7 6.5 53 266-328 22-74 (84)
52 COG3962 Acetolactate synthase 30.0 38 0.00083 36.1 2.5 40 422-461 216-255 (617)
53 PF01230 HIT: HIT domain; Int 22.2 99 0.0021 25.1 3.2 33 40-72 45-77 (98)
54 PF07278 DUF1441: Protein of u 21.1 1.3E+02 0.0028 27.3 3.9 24 470-493 102-125 (152)
55 COG4148 ModC ABC-type molybdat 21.1 1.3E+02 0.0028 30.5 4.1 44 244-287 144-193 (352)
56 KOG3954 Electron transfer flav 20.1 8.8E+02 0.019 24.2 9.7 31 413-443 232-262 (336)
57 PRK13601 putative L7Ae-like ri 20.0 3.6E+02 0.0078 21.6 5.9 52 266-329 17-70 (82)
No 1
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1.4e-100 Score=827.69 Aligned_cols=469 Identities=70% Similarity=1.041 Sum_probs=453.3
Q ss_pred CccccccceeccCCcHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHH
Q 011103 25 SVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLV 104 (493)
Q Consensus 25 ~~~~~~~~~i~~g~~~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll 104 (493)
...+.++|+|.||.+.++|+.+++||+.|+++|++||||+||||||++++|+++|||||+||+|+|+++||++|+||+|+
T Consensus 50 ~~~~~~~k~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll 129 (600)
T PLN03167 50 SPKVKAAKELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLV 129 (600)
T ss_pred CchhhhcceeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHH
Confidence 45556799999994227999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccChHHHHHHHHHhcCCc
Q 011103 105 RQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGND 184 (493)
Q Consensus 105 ~~~a~~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~L~~va~ts~~~~ 184 (493)
+++|++||+++||||||+++||++||+++.++++.|+||..|++||+.|.+.+++.|++++.|+++.+|.++|++|++++
T Consensus 130 ~~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d~~L~~vA~tS~~~~ 209 (600)
T PLN03167 130 RQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNN 209 (600)
T ss_pred HHHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999997668999999999999
Q ss_pred hhHhHHHHHHHHhhccCCceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCCCHHHHHH
Q 011103 185 YTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFK 264 (493)
Q Consensus 185 ~~l~~li~~Ai~~v~~~g~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~el~~ 264 (493)
+.|++++++|+.+++++|.|.+++|++++|++++++|++|+++|.||||++++++|+++++||+|+++|++|++++++.+
T Consensus 210 ~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~ 289 (600)
T PLN03167 210 YEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIG 289 (600)
T ss_pred HHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHH
Confidence 99999999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCeeeecccCccccCCCCC
Q 011103 265 ILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKE 344 (493)
Q Consensus 265 ~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~ 344 (493)
+++.+.+.|+|+||++++|+++++++|+.|+++|.++|+|||+|+||+.++++|+|||++|||++++++.++++++++++
T Consensus 290 ~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~ 369 (600)
T PLN03167 290 ILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKE 369 (600)
T ss_pred HHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred cccceeEEEEecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHH
Q 011103 345 VLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLR 424 (493)
Q Consensus 345 ~lG~~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~ 424 (493)
+||+|++|++.++.++++++.++++.+++|+.+++.+++++.++|++++|++|+++|++++++|+|||+|+.+++|++|+
T Consensus 370 ~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~ 449 (600)
T PLN03167 370 VLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLR 449 (600)
T ss_pred HCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHH
Confidence 99999999999999999999899999999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHHHHHHHHHhcCccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 425 IEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 425 ~~dAl~a~~~al~~gvvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
++||++++|+|+++|+|||||++|+++|.+|++++...++.+|++|++++++||+.||++||+|||+|+
T Consensus 450 i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~ 518 (600)
T PLN03167 450 VEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNG 518 (600)
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCH
Confidence 999999999999999999999999999999999887788999998999999999999999999999985
No 2
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.3e-100 Score=819.63 Aligned_cols=460 Identities=48% Similarity=0.796 Sum_probs=445.8
Q ss_pred ccceeccCCcHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHh
Q 011103 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (493)
Q Consensus 30 ~~~~i~~g~~~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~ 109 (493)
|+|.|.|| ++++..|++|+..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||.+|+||+|++++|+
T Consensus 1 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~ 78 (542)
T PRK12849 1 MAKIIKFD--EEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVAS 78 (542)
T ss_pred CCccccch--HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHH
Confidence 46899999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccChH-HHHHHHHHhcCCchhHh
Q 011103 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (493)
Q Consensus 110 ~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~L~~va~ts~~~~~~l~ 188 (493)
+||+++||||||+|+||++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++. +|.++|+||+++++.++
T Consensus 79 ~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~ 158 (542)
T PRK12849 79 KTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIG 158 (542)
T ss_pred hcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999866 89999999999999999
Q ss_pred HHHHHHHHhhccCCceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCCCHHHHHHHHHH
Q 011103 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (493)
Q Consensus 189 ~li~~Ai~~v~~~g~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~el~~~le~ 268 (493)
+++++|+..++++|.+.++.|++++|++++++|++|+++|.+|||.++.++++++++||+|+++|++|++++++.+++++
T Consensus 159 ~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~ 238 (542)
T PRK12849 159 ELIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEK 238 (542)
T ss_pred HHHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHH
Confidence 99999999999888888889999998669999999999999999999888899999999999999999999999999999
Q ss_pred HHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCeeeecccCccccCCCCCcccc
Q 011103 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (493)
Q Consensus 269 i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~ 348 (493)
+.+.|+||||++++|+++++++|+.|+++|.++|+|||.|+|+++++++|+|||.+|||++++++.+.+++++++++||+
T Consensus 239 i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~ 318 (542)
T PRK12849 239 VAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGR 318 (542)
T ss_pred HHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCce
Confidence 99999999999999999999999999999999999999999999999999999999999999988777899999999999
Q ss_pred eeEEEEecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHH
Q 011103 349 AIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDA 428 (493)
Q Consensus 349 ~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dA 428 (493)
|+.|++++++|+++++|++++++..|+++|+++++++.++|++++|+||+++|+++++||+|||+|+.+++|++|+++||
T Consensus 319 ~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DA 398 (542)
T PRK12849 319 AKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDA 398 (542)
T ss_pred eeEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 429 LNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 429 l~a~~~al~~gvvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
++++++++++|+|||||++|+++|.+|++++ ..++.+| +++++|++||+.||++||+|||+|+
T Consensus 399 l~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~-~~~g~~~-~~i~~~a~Al~~ip~~La~NaG~d~ 461 (542)
T PRK12849 399 LNATRAAVEEGIVPGGGVALLRAAKALDELA-GLNGDQA-AGVEIVRRALEAPLRQIAENAGLDG 461 (542)
T ss_pred HHHHHHHHHcCeecCCCHHHHHHHHHHHHhh-CCChHHH-HHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 9999999999999999999999999999988 7778777 5899999999999999999999985
No 3
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7e-100 Score=817.10 Aligned_cols=460 Identities=50% Similarity=0.809 Sum_probs=441.3
Q ss_pred ccceeccCCcHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHh
Q 011103 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (493)
Q Consensus 30 ~~~~i~~g~~~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~ 109 (493)
|+|++.|| +++|..|++|+..++++|+|||||+||+|||+++.|+++|||||+||+|+|+++||++++||+|++++|+
T Consensus 1 ~~~~~~~~--~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~ 78 (542)
T PRK00013 1 MAKDIKFG--EDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVAS 78 (542)
T ss_pred CCchhhch--HHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHH
Confidence 46899999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccChH-HHHHHHHHhcCCchhHh
Q 011103 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (493)
Q Consensus 110 ~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~L~~va~ts~~~~~~l~ 188 (493)
+||+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++. +|.++|+||+++++.++
T Consensus 79 ~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls 158 (542)
T PRK00013 79 KTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIG 158 (542)
T ss_pred hcCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999866 89999999999999999
Q ss_pred HHHHHHHHhhccCCceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCCCHHHHHHHHHH
Q 011103 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (493)
Q Consensus 189 ~li~~Ai~~v~~~g~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~el~~~le~ 268 (493)
+++++|+..++++|.|.++.+....+.+++++|++|+++|.+|||.+++++++++++||+|+++|++|++++++.+++++
T Consensus 159 ~lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~ 238 (542)
T PRK00013 159 KLIAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQ 238 (542)
T ss_pred HHHHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHH
Confidence 99999999999888777765544444449999999999999999999988999999999999999999999999999999
Q ss_pred HHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCeeeecccCccccCCCCCcccc
Q 011103 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (493)
Q Consensus 269 i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~ 348 (493)
+.+.|+||||++++|+++++++|+.|+++|+++|+|||+|+||+.++++|+|||++||+++++++.+++++++++++||+
T Consensus 239 i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~ 318 (542)
T PRK00013 239 VAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQ 318 (542)
T ss_pred HHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred eeEEEEecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHH
Q 011103 349 AIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDA 428 (493)
Q Consensus 349 ~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dA 428 (493)
|+.+++++++|++|++|++++.+..|+++|+.+++++.++|++++|+||+++|+|+++||+|||+|+.+++|++|+++||
T Consensus 319 ~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Da 398 (542)
T PRK00013 319 AKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDA 398 (542)
T ss_pred eeEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 429 LNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 429 l~a~~~al~~gvvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
++++++++++|+|||||++|+++|.+|+++ ...++.+| +++++|++||+.||++||+|||+|+
T Consensus 399 l~~vk~al~~g~VpGGGa~e~~~s~~L~~~-~~~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~ 461 (542)
T PRK00013 399 LHATRAAVEEGIVPGGGVALLRAAPALEAL-KGLNGDEA-TGINIVLRALEAPLRQIAENAGLEG 461 (542)
T ss_pred HHHHHHHHHcCcccCcHHHHHHHHHHHHHh-cCCChHHH-HHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 999999999999999999999999999988 66777777 5899999999999999999999985
No 4
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=3e-99 Score=811.38 Aligned_cols=458 Identities=50% Similarity=0.811 Sum_probs=443.0
Q ss_pred ceeccCCcHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhc
Q 011103 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGART 111 (493)
Q Consensus 32 ~~i~~g~~~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~ 111 (493)
|++.|| +++|..|++|+..++++|+|||||+||+|||+++.|+++|||||+||+|+|+++||++++||+|++++|++|
T Consensus 2 ~~~~~~--~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~q 79 (524)
T TIGR02348 2 KQIKFD--EEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKT 79 (524)
T ss_pred cccccc--HHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHcc
Confidence 689999 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccChH-HHHHHHHHhcCCchhHhHH
Q 011103 112 NDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGKM 190 (493)
Q Consensus 112 d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~L~~va~ts~~~~~~l~~l 190 (493)
|+++||||||+++||++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++. +|.++|++|+++++.++++
T Consensus 80 d~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~l 159 (524)
T TIGR02348 80 NDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSL 159 (524)
T ss_pred CceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999866 8999999999999999999
Q ss_pred HHHHHHhhccCCceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCCCHHHHHHHHHHHH
Q 011103 191 ISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAV 270 (493)
Q Consensus 191 i~~Ai~~v~~~g~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~el~~~le~i~ 270 (493)
+++|+..++++|.|.+..|+..+|++++++|++|+++|.+|||.++++++++.++||+|+++|++|++++++.++++++.
T Consensus 160 v~~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~ 239 (524)
T TIGR02348 160 IAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVA 239 (524)
T ss_pred HHHHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHH
Confidence 99999999998988888898886766999999999999999999998899999999999999999999999999999999
Q ss_pred HcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCeeeecccCccccCCCCCccccee
Q 011103 271 KEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAI 350 (493)
Q Consensus 271 ~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~ 350 (493)
+.|+||||++++|+++++++|+.|+++|+++|+|||+|+|++.++++|+|||++|||++++++.+++++++++++||+|+
T Consensus 240 ~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~ 319 (524)
T TIGR02348 240 QSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAK 319 (524)
T ss_pred HhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred EEEEecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHH
Q 011103 351 KVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALN 430 (493)
Q Consensus 351 ~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~ 430 (493)
.|++++++|++++++++++.+..|++.++++++++.++|++++|+||+++|+|+++||+|||+|+.+++|++|+++||++
T Consensus 320 ~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~ 399 (524)
T TIGR02348 320 KVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALN 399 (524)
T ss_pred EEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 431 ATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 431 a~~~al~~gvvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
++|+++++|||||||++|+++|.+|++ ....++.+| +++++|++||+.||++||+|||+|+
T Consensus 400 ~~r~a~~~g~VpGGGa~e~~~s~~L~~-~~~~~~~~~-~~~~~~a~AL~~ip~~La~NaG~d~ 460 (524)
T TIGR02348 400 ATRAAVEEGIVPGGGVALLRAAAALEG-LKGDNEDEA-IGIDIVKRALEAPLRQIAENAGKDG 460 (524)
T ss_pred HHHHHHhcCCccCCcHHHHHHHHHHHH-hccCChHHH-HHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999998 666777776 5999999999999999999999985
No 5
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.3e-99 Score=814.63 Aligned_cols=460 Identities=47% Similarity=0.786 Sum_probs=444.0
Q ss_pred ccceeccCCcHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHh
Q 011103 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (493)
Q Consensus 30 ~~~~i~~g~~~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~ 109 (493)
|+|+|.|| +++|+.|++|+..++++|+|||||+||||||+++.|+++|||||+||+++|+++||++|+||+|++++|+
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~ 79 (545)
T PRK12852 2 AAKDVKFS--GDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVAS 79 (545)
T ss_pred Ccchhhcc--HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHh
Confidence 46899999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccChH-HHHHHHHHhcCCchhHh
Q 011103 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (493)
Q Consensus 110 ~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~L~~va~ts~~~~~~l~ 188 (493)
+||+++||||||+|+||++||+++.+++++|+||..|++||++|.+.++++|+++++|+++. ++.++|++|+++++.|+
T Consensus 80 ~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~ 159 (545)
T PRK12852 80 KTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIG 159 (545)
T ss_pred hcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999866 89999999999999999
Q ss_pred HHHHHHHHhhccCCceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCCCHHHHHHHHHH
Q 011103 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (493)
Q Consensus 189 ~li~~Ai~~v~~~g~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~el~~~le~ 268 (493)
+++++|+.+++++|.|.+..|+++.+.+++++|+.|+++|.+|||++++++|+.+++||+|+++|++|+++++++++++.
T Consensus 160 ~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~ 239 (545)
T PRK12852 160 KMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEA 239 (545)
T ss_pred HHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHH
Confidence 99999999999999998888998855559999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCeeeecccCccccCCCCCcccc
Q 011103 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (493)
Q Consensus 269 i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~ 348 (493)
+.+.|+||||++++|+++++++|+.|+++|.++|+|||+|+|++.++++|+|||++|||++++++.+.+++++++++||+
T Consensus 240 i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~ 319 (545)
T PRK12852 240 VVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGR 319 (545)
T ss_pred HHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988787899999999999
Q ss_pred eeEEEEecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHH
Q 011103 349 AIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDA 428 (493)
Q Consensus 349 ~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dA 428 (493)
|+.++++++++++++++++++.+..|+++|+++++++.+.|++++|+||+++|+++++||+|||+|+.+++|++|+++||
T Consensus 320 ~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DA 399 (545)
T PRK12852 320 AKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDA 399 (545)
T ss_pred CcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 429 LNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 429 l~a~~~al~~gvvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
+|++++++++|+|||||++|++++.+|++++.. ++.+| +++++|++||+.||++||+|||+|+
T Consensus 400 l~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~-~~~~q-~~i~~~a~AL~~ip~~La~NaG~d~ 462 (545)
T PRK12852 400 LNATRAAVQEGIVPGGGVALLRAKKAVGRINND-NADVQ-AGINIVLKALEAPIRQIAENAGVEG 462 (545)
T ss_pred HHHHHHHHhcCCCcCchHHHHHHHHHHHHhhcC-CcHHH-HHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 999999999999999999999999999998866 56666 6999999999999999999999985
No 6
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=3.7e-99 Score=815.14 Aligned_cols=464 Identities=47% Similarity=0.780 Sum_probs=446.4
Q ss_pred cccccceeccCCcHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHH
Q 011103 27 PRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQ 106 (493)
Q Consensus 27 ~~~~~~~i~~g~~~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~ 106 (493)
.+.|++++.|| ++++..|++||..|+++|+|||||+||||||+++.|+++|||||+||+++++++||++|+||+|+++
T Consensus 10 ~~~~~~~~~~~--~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~ 87 (555)
T PTZ00114 10 YRFKGKEIRFG--DEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQ 87 (555)
T ss_pred HHHhhhhhhhH--HHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHH
Confidence 34557788899 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCCCcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccChH-HHHHHHHHhcCCch
Q 011103 107 AGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDY 185 (493)
Q Consensus 107 ~a~~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~L~~va~ts~~~~~ 185 (493)
+|++||+++||||||+|+||++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++. +|.++|+||+++++
T Consensus 88 ~a~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~ 167 (555)
T PTZ00114 88 VASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDV 167 (555)
T ss_pred HHHhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999866 89999999999999
Q ss_pred hHhHHHHHHHHhhccCCceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCCCHHHHHHH
Q 011103 186 TVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKI 265 (493)
Q Consensus 186 ~l~~li~~Ai~~v~~~g~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~el~~~ 265 (493)
.|++++++|+.+++++|.|.+++|++++|++++++|++|+++|.+|||.+++++|+.+++||+|+++|++|++++++.++
T Consensus 168 ~l~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~ 247 (555)
T PTZ00114 168 EIGSLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPI 247 (555)
T ss_pred HHHHHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHHHHHH
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCeeeecc-cCccccCCCCC
Q 011103 266 LDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDE-MGLTLDKAGKE 344 (493)
Q Consensus 266 le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~-~~~~~~~~~~~ 344 (493)
++++.+.|+||||++++|+++++++|+.|+++|.++|+|||+|+||++++++|+|||++|||+++++. .+..+++++++
T Consensus 248 le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~ 327 (555)
T PTZ00114 248 LEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPS 327 (555)
T ss_pred HHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999986 66677889999
Q ss_pred cccceeEEEEecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHH
Q 011103 345 VLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLR 424 (493)
Q Consensus 345 ~lG~~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~ 424 (493)
+||+|++|+++++++++++++++++.|++|++.++.+++.+.++|++++|+||+++|+++++||+|||+|+.+++|++|+
T Consensus 328 ~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~ 407 (555)
T PTZ00114 328 MLGSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDR 407 (555)
T ss_pred HcCCCceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCccccCchhhhHHHHHHHhHhh--hcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 425 IEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKE--LLDNEEQKIGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 425 ~~dAl~a~~~al~~gvvpGGG~~e~~ls~~L~~~~~--~~~~~~q~~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
++||++++++++++|||||||++|+++|.+|++++. ..++++| +|+++|++||+.||++||+|||+|+
T Consensus 408 i~Dal~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~-~~i~~~a~AL~~ip~~La~NaG~d~ 477 (555)
T PTZ00114 408 IEDALNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQR-TGVKIVRNALRLPTKQIAENAGVEG 477 (555)
T ss_pred HHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchHHH-HHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 999999999999999999999999999999998875 4667777 5999999999999999999999985
No 7
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.5e-99 Score=811.94 Aligned_cols=460 Identities=47% Similarity=0.792 Sum_probs=442.5
Q ss_pred ccceeccCCcHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHh
Q 011103 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (493)
Q Consensus 30 ~~~~i~~g~~~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~ 109 (493)
|+|+|.|| ++++..|++||..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||++|+||+|++++|+
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~ 79 (544)
T PRK12850 2 AAKEIRFS--TDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVAS 79 (544)
T ss_pred Ccceeccc--HHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHh
Confidence 47899999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccChH-HHHHHHHHhcCCchhHh
Q 011103 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (493)
Q Consensus 110 ~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~L~~va~ts~~~~~~l~ 188 (493)
+||+++||||||+|+||++||+++.+++++|+||..|++||+.|.+.++++|+++++++++. +|.++|++|+++++.|+
T Consensus 80 ~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~ 159 (544)
T PRK12850 80 KTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIG 159 (544)
T ss_pred hhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999866 89999999999999999
Q ss_pred HHHHHHHHhhccCCceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCCCHHHHHHHHHH
Q 011103 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (493)
Q Consensus 189 ~li~~Ai~~v~~~g~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~el~~~le~ 268 (493)
+++++|+..++++|.|.+..+....+++++++|++|+++|.+|||.++.++++.+++||+|+++|+++++.+++.+++++
T Consensus 160 ~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~ 239 (544)
T PRK12850 160 EMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEA 239 (544)
T ss_pred HHHHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHH
Confidence 99999999999888877766665666669999999999999999999888899999999999999999999999999999
Q ss_pred HHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCeeeecccCccccCCCCCcccc
Q 011103 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (493)
Q Consensus 269 i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~ 348 (493)
+.+.|+||||++++|+++++++|+.|+++|.++++|||+|+|++.++++|+|||++|||++++++.+++++++++++||+
T Consensus 240 i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~ 319 (544)
T PRK12850 240 VVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGR 319 (544)
T ss_pred HHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988777899999999999
Q ss_pred eeEEEEecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHH
Q 011103 349 AIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDA 428 (493)
Q Consensus 349 ~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dA 428 (493)
|++|++++++|+++++|+++++++.|+++++++++++.++|++++|+||++||+++++||+|||+|+.+++|++|+++||
T Consensus 320 ~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DA 399 (544)
T PRK12850 320 AKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDA 399 (544)
T ss_pred CcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 429 LNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 429 l~a~~~al~~gvvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
++++++++++|||||||++|++++.+|+++ ...++.+| +++++|++||+.||++||+|||+|+
T Consensus 400 l~~~k~a~~~g~VpGGGa~e~~~s~~L~~~-~~~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~ 462 (544)
T PRK12850 400 LHATRAAVEEGIVPGGGVALLRARSALRGL-KGANADET-AGIDIVRRALEEPLRQIATNAGFEG 462 (544)
T ss_pred HHHHHHHHhcCCccCCcHHHHHHHHHHHhc-cCCChHHH-HHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 999999999999999999999999999988 56667777 6999999999999999999999985
No 8
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.1e-98 Score=805.57 Aligned_cols=458 Identities=51% Similarity=0.825 Sum_probs=443.8
Q ss_pred ceeccCCcHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhc
Q 011103 32 KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGART 111 (493)
Q Consensus 32 ~~i~~g~~~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~ 111 (493)
|+|.|| ++++..|++||..++++|+|||||+||+|||+++.|+++|||||+||+++++++||++++||+|++++|++|
T Consensus 1 ~~~~~g--~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~q 78 (520)
T cd03344 1 KDIKFG--EEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKT 78 (520)
T ss_pred Ccccch--HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhh
Confidence 468899 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccChH-HHHHHHHHhcCCchhHhHH
Q 011103 112 NDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGKM 190 (493)
Q Consensus 112 d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~L~~va~ts~~~~~~l~~l 190 (493)
|+++||||||+++||++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++. +|.++|+||+++++.++++
T Consensus 79 d~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~l 158 (520)
T cd03344 79 NDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGEL 158 (520)
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999866 8999999999999999999
Q ss_pred HHHHHHhhccCCceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCCCHHHHHHHHHHHH
Q 011103 191 ISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAV 270 (493)
Q Consensus 191 i~~Ai~~v~~~g~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~el~~~le~i~ 270 (493)
+++|+..++++|.|.+.+|++++|++++++|++|+++|.+|+|..++++++++++||+|+++|+++++++++.++++++.
T Consensus 159 v~~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~ 238 (520)
T cd03344 159 IAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVA 238 (520)
T ss_pred HHHHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999988888889999999966999999999999999999998889999999999999999999999999999999
Q ss_pred HcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCeeeecccCccccCCCCCccccee
Q 011103 271 KEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAI 350 (493)
Q Consensus 271 ~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~ 350 (493)
+.|+||||++++|+++++++|..|++++.++++|||+|+++++++++|+|||.+|||++++++++++++++++++||+|+
T Consensus 239 ~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~ 318 (520)
T cd03344 239 KAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAK 318 (520)
T ss_pred hhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999998877788999999999999
Q ss_pred EEEEecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHH
Q 011103 351 KVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALN 430 (493)
Q Consensus 351 ~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~ 430 (493)
.|++++++++|+.+|+++++++.|++.++++++++.++|++++|+||+++|+++++||+|||+|+.+++|++|+++||++
T Consensus 319 ~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~ 398 (520)
T cd03344 319 KVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALN 398 (520)
T ss_pred EEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 431 ATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 431 a~~~al~~gvvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
++++++++|+|||||++|++++++|++++. .++++| +++++|++||+.||++||+|||+|+
T Consensus 399 ~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~-~~~~~~-~~~~~~a~Al~~ip~~La~NaG~d~ 459 (520)
T cd03344 399 ATRAAVEEGIVPGGGVALLRASPALDKLKA-LNGDEK-LGIEIVRRALEAPLRQIAENAGVDG 459 (520)
T ss_pred HHHHHHhcCCCcCCcHHHHHHHHHHHHhcc-CChHHH-HHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 999999999999999999999999999987 777777 5999999999999999999999985
No 9
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=2e-98 Score=805.88 Aligned_cols=460 Identities=50% Similarity=0.817 Sum_probs=440.9
Q ss_pred ccceeccCCcHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHh
Q 011103 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (493)
Q Consensus 30 ~~~~i~~g~~~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~ 109 (493)
|+|+|.|| +++|+.+++||..++++|++||||+||+|||+++.|+++|||||+||+|+|+++||++++|++|++++|.
T Consensus 1 ~~~~~~~~--~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~ 78 (529)
T CHL00093 1 MSKKILYQ--DNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAAS 78 (529)
T ss_pred CCceeecC--HHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHH
Confidence 46899999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccChH-HHHHHHHHhcCCchhHh
Q 011103 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (493)
Q Consensus 110 ~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~L~~va~ts~~~~~~l~ 188 (493)
+|++++||||||+|+||++||+++.+++++|+||..|++||+.|.+.+++.|+++++|+++. +|.++|++|+++++.|+
T Consensus 79 ~~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~~~l~ 158 (529)
T CHL00093 79 KTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVG 158 (529)
T ss_pred hcCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999866 89999999999999999
Q ss_pred HHHHHHHHhhccCCceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCCCH-HHHHHHHH
Q 011103 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNP-KDMFKILD 267 (493)
Q Consensus 189 ~li~~Ai~~v~~~g~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~-~el~~~le 267 (493)
+++++|+.+++++|.|.+..|+..++.+++++|++|+++|.+|||.+++++|+.+++||+|+++|++++.. ++++++++
T Consensus 159 ~lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~ 238 (529)
T CHL00093 159 SMIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILE 238 (529)
T ss_pred HHHHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHH
Confidence 99999999999989888777766666669999999999999999999999999999999999999999987 78999999
Q ss_pred HHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCeeeecccCccccCCCCCccc
Q 011103 268 SAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLG 347 (493)
Q Consensus 268 ~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG 347 (493)
.+.+.|.|+||++++|+++++++|+.|+.+|.++|+||++|+++++++++|+|||++|||++++++.+++++++++++||
T Consensus 239 ~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG 318 (529)
T CHL00093 239 QVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLG 318 (529)
T ss_pred HHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCC
Confidence 99999999999999999999999999999998999999999999999999999999999999998888889999999999
Q ss_pred ceeEEEEecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHH
Q 011103 348 TAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIED 427 (493)
Q Consensus 348 ~~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~d 427 (493)
+|+.++++++++++++ .++++.+..|+..++++++.++++|++++|+||+++|+|+++||+|||+|+.+++|++|+++|
T Consensus 319 ~~~~v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~D 397 (529)
T CHL00093 319 QARRIIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLED 397 (529)
T ss_pred cceEEEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHH
Confidence 9999999999999998 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccCchhhhHHHHHHHhHhh-hcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 428 ALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKE-LLDNEEQKIGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 428 Al~a~~~al~~gvvpGGG~~e~~ls~~L~~~~~-~~~~~~q~~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
|++++|+++++|+|||||++|++||++|++++. ..++.+| +++++|++||+.||++||+|||+|+
T Consensus 398 Al~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~-~~i~~~a~AL~~ip~~La~NaG~d~ 463 (529)
T CHL00093 398 AINATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDEL-IGALIVARAILAPLKRIAENAGKNG 463 (529)
T ss_pred HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHHH-HHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 999999999999999999999999999999876 6777777 5899999999999999999999985
No 10
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.7e-98 Score=805.44 Aligned_cols=460 Identities=47% Similarity=0.801 Sum_probs=440.0
Q ss_pred ccceeccCCcHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHh
Q 011103 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (493)
Q Consensus 30 ~~~~i~~g~~~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~ 109 (493)
|+|++.|| ++++..+++|+..++++|++||||+||+|||+++.|+++|||||+||+++|+++||++++||+|++++|+
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~ 79 (541)
T PRK12851 2 AAKEVKFH--VEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVAS 79 (541)
T ss_pred Ccceeccc--HHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHH
Confidence 47899999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccChH-HHHHHHHHhcCCchhHh
Q 011103 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVG 188 (493)
Q Consensus 110 ~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~L~~va~ts~~~~~~l~ 188 (493)
+||+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++. ++.++|++|+++++.|+
T Consensus 80 ~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~ 159 (541)
T PRK12851 80 KTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIG 159 (541)
T ss_pred hhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999866 89999999999999999
Q ss_pred HHHHHHHHhhccCCceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCCCHHHHHHHHHH
Q 011103 189 KMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDS 268 (493)
Q Consensus 189 ~li~~Ai~~v~~~g~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~el~~~le~ 268 (493)
+++++|+..++++|.|.+..+....+++++++|++|+++|.+|||.++.++|+++++||+|+++|+++++.+++.+++++
T Consensus 160 ~lv~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~ 239 (541)
T PRK12851 160 RLVAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEA 239 (541)
T ss_pred HHHHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHH
Confidence 99999999999888776655444444459999999999999999999998999999999999999999999999999999
Q ss_pred HHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCeeeecccCccccCCCCCcccc
Q 011103 269 AVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT 348 (493)
Q Consensus 269 i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~ 348 (493)
+.+.|+||||++++|+++++++|+.|+++|.++|+|||+|+||+.++++|+|||++|||++++++.+++++++++++||+
T Consensus 240 i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~ 319 (541)
T PRK12851 240 VVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGR 319 (541)
T ss_pred HHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999987777789999999999
Q ss_pred eeEEEEecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHH
Q 011103 349 AIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDA 428 (493)
Q Consensus 349 ~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dA 428 (493)
|+.|++.+++|+++++|++++++..|+++++++++++.++|++++|++|+++|+|+++||+|||+|+.+++|++|+++||
T Consensus 320 ~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DA 399 (541)
T PRK12851 320 AKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDA 399 (541)
T ss_pred ccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 429 LNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 429 l~a~~~al~~gvvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
++++++++++|+|||||++|+++|.+|++++.. ++.+| +++++|++||+.||++||+|||+|+
T Consensus 400 l~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~-~~~~~-~~~~~~a~AL~~ip~~La~NaG~d~ 462 (541)
T PRK12851 400 LHATRAAVEEGIVPGGGVALLRAVKALDKLETA-NGDQR-TGVEIVRRALEAPVRQIAENAGAEG 462 (541)
T ss_pred HHHHHHHHHcCcccCchHHHHHHHHHHHHHhcC-CcHHH-HHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 999999999999999999999999999998865 66666 6999999999999999999999985
No 11
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=9.1e-98 Score=801.38 Aligned_cols=459 Identities=46% Similarity=0.789 Sum_probs=441.7
Q ss_pred cceeccCCcHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhh
Q 011103 31 VKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGAR 110 (493)
Q Consensus 31 ~~~i~~g~~~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~ 110 (493)
+|+|.|| +++|+.|++|+..++++|++||||+||||||+++.|+++|||||+||+++|++++|++++||+|++++|++
T Consensus 3 ~~~~~~~--~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~ 80 (546)
T PRK14104 3 AKEVKFG--VDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASK 80 (546)
T ss_pred cceecch--HHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHh
Confidence 4889999 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccChH-HHHHHHHHhcCCchhHhH
Q 011103 111 TNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGK 189 (493)
Q Consensus 111 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~L~~va~ts~~~~~~l~~ 189 (493)
||+++||||||+|+||++||+++.+++++|+||..|++||+.|.+.+++.|+++++|+++. ++.++|++|+++++.+++
T Consensus 81 qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~ 160 (546)
T PRK14104 81 SADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGK 160 (546)
T ss_pred hcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999866 799999999999999999
Q ss_pred HHHHHHHhhccCCceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCCCHHHHHHHHHHH
Q 011103 190 MISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSA 269 (493)
Q Consensus 190 li~~Ai~~v~~~g~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~el~~~le~i 269 (493)
++++|+.+++++|.|.+..+++++|++++++|++|+++|.+|||+++++.++.++++|+|+++|.+++++++++++++.+
T Consensus 161 lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i 240 (546)
T PRK14104 161 FLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAV 240 (546)
T ss_pred HHHHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHH
Confidence 99999999999999998888888766699999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCeeeecccCccccCCCCCcccce
Q 011103 270 VKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTA 349 (493)
Q Consensus 270 ~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~ 349 (493)
.+.|+||||++++|+++|+++|..|++++.++|+|||+|+||+.++++|+|||++|||++++++.+++++++++++||+|
T Consensus 241 ~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a 320 (546)
T PRK14104 241 VQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRA 320 (546)
T ss_pred HHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCce
Confidence 99999999999999999999999999999899999999999999999999999999999999888888999999999999
Q ss_pred eEEEEecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHH
Q 011103 350 IKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDAL 429 (493)
Q Consensus 350 ~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl 429 (493)
+++++++++++++++|++++.+.+|+++|+.++++++++|++++|+||+++|+++++||+|||+|+.+++|++|+++||+
T Consensus 321 ~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal 400 (546)
T PRK14104 321 KKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAM 400 (546)
T ss_pred eEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 430 NATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 430 ~a~~~al~~gvvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
+++++++++|+|||||++|++++.+|+++. ..++.+| +|+++|++||+.||++||+|||+++
T Consensus 401 ~a~~~ai~~g~VpGGGa~e~~~s~~L~~~~-~~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~ 462 (546)
T PRK14104 401 HATRAAVEEGIVPGGGVALLRASEQLKGIK-TKNDDQK-TGVEIVRKALSAPARQIAINAGEDG 462 (546)
T ss_pred HHHHHHHHcCcCcCchHHHHHHHHHHHHhh-cCChHHH-HHHHHHHHHHHhhHHHHHHhCCCCH
Confidence 999999999999999999999999999874 3445555 6999999999999999999999985
No 12
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-92 Score=715.35 Aligned_cols=468 Identities=47% Similarity=0.764 Sum_probs=454.6
Q ss_pred CCCCCccccccceeccCCcHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchH
Q 011103 21 RAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIG 100 (493)
Q Consensus 21 ~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~g 100 (493)
+.++..+| ++|+|.|| .++|+.+++|+..|+++|.+||||+|||++|.+++|.|+|||||+|+++++.++++++|+|
T Consensus 7 ~~~~~~~r-~ak~i~fg--~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~g 83 (550)
T KOG0356|consen 7 RSQTKCVR-YAKDIKFG--KDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIG 83 (550)
T ss_pred CCcccccc-cccccccC--HHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhc
Confidence 34444555 79999999 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccChH-HHHHHHHH
Q 011103 101 VKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAV 179 (493)
Q Consensus 101 akll~~~a~~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~L~~va~t 179 (493)
|+|+++++.++++..||||||+++|++++..++.+-+.+|.+|..+++|+..+.+.+.+.|+++++|++.. ++.+||++
T Consensus 84 aklvq~va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAti 163 (550)
T KOG0356|consen 84 AKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATI 163 (550)
T ss_pred cHHHHHHHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 99999999
Q ss_pred hcCCchhHhHHHHHHHHhhccCCceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCCCH
Q 011103 180 SAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNP 259 (493)
Q Consensus 180 s~~~~~~l~~li~~Ai~~v~~~g~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~ 259 (493)
|+|+|..+++++.+|+.++|++|+|+++.|.+++|++++++||.|++||++|||++++++..++|++|++++++.+|+++
T Consensus 164 SAngD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v 243 (550)
T KOG0356|consen 164 SANGDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSV 243 (550)
T ss_pred hcCCcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCeeeecccC-ccc
Q 011103 260 KDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMG-LTL 338 (493)
Q Consensus 260 ~el~~~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~~~-~~~ 338 (493)
+++.|.+|...+...||||+++||+.++|.+|+.|++++.++++|||+|+||+.+++.+.|++.+||+.++.++++ +++
T Consensus 244 ~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~l 323 (550)
T KOG0356|consen 244 QSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNL 323 (550)
T ss_pred HHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987 889
Q ss_pred cCCCCCcccceeEEEEecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhH
Q 011103 339 DKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVEL 418 (493)
Q Consensus 339 ~~~~~~~lG~~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l 418 (493)
++.++++||.|.++.+++++++++.+.+++++++.||++++..++.+.++|+++++++|+++|++++++|.+||.|+.|+
T Consensus 324 e~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev 403 (550)
T KOG0356|consen 324 EDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEV 403 (550)
T ss_pred ccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 011103 419 KDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGPI 492 (493)
Q Consensus 419 ~E~~~~~~dAl~a~~~al~~gvvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~~a~AL~~i~~~L~~NaG~~ 492 (493)
+|++.+++|||||+++|+++|+|||||+++++|+..|.++.. .++.+|..|++++.+||..|.++|+.|||++
T Consensus 404 ~ekk~rv~dalnat~aaveeGivpGGG~all~~~~~l~~lk~-~~~~~~k~G~eiv~~Al~~P~~~IakNAGvd 476 (550)
T KOG0356|consen 404 NEKKDRVEDALNATRAAVEEGIVPGGGTALLRAIPVLDELKA-TNNFDQKVGVEIVKKALRLPAQTIAKNAGVD 476 (550)
T ss_pred hhhhhhHHHHHHHHHHHhhcCcccCCchHHHHhhhhhhhccc-ccchHhhhhHHHHHHHHhhhHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999876 5567788899999999999999999999986
No 13
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=1.4e-80 Score=669.00 Aligned_cols=390 Identities=26% Similarity=0.414 Sum_probs=359.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCCc
Q 011103 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (493)
Q Consensus 40 ~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~GDGT 119 (493)
++++..|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||. |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~qd~~~GDGT 90 (519)
T TIGR02339 15 RDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPA----AKMLVEVAKTQDAEVGDGT 90 (519)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHH----HHHHHHHHHHHHHHhCCCc
Confidence 789999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCh--H-HHHHHHHHhcCCc-------hhHhH
Q 011103 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED--H-ELADVAAVSAGND-------YTVGK 189 (493)
Q Consensus 120 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~--~-~L~~va~ts~~~~-------~~l~~ 189 (493)
||+++|+++||+++.+++++|+||..|++||+.|.+.++++|++++++++. . .|.++|+|+++++ +.|++
T Consensus 91 tt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~ 170 (519)
T TIGR02339 91 TTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLAN 170 (519)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccchhHHHHHH
Confidence 999999999999999999999999999999999999999999999999864 3 7999999999865 78999
Q ss_pred HHHHHHHhhcc---CCc---------eEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEeccc--
Q 011103 190 MISDALQQVGR---NGV---------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK-- 255 (493)
Q Consensus 190 li~~Ai~~v~~---~g~---------I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~-- 255 (493)
++++|+.++++ +|. |.+++|++++|| ++++|++|+++|.+| +|+.+++||+|++++++
T Consensus 171 l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~vi~~~~~~~-------~m~~~i~n~kIlll~~~Le 242 (519)
T TIGR02339 171 LVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDT-ELVEGIVVDKEPVHP-------GMPKRVKNAKIALLDAPLE 242 (519)
T ss_pred HHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcc-eeEeeEEEecCCCCC-------CCccccCCCcEEEEecccc
Confidence 99999999985 453 345799999999 999999999999987 36778999999999997
Q ss_pred -----------CCCHHHHHHHHH-----------HHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCccccc
Q 011103 256 -----------IKNPKDMFKILD-----------SAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (493)
Q Consensus 256 -----------i~~~~el~~~le-----------~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~ 313 (493)
+++++++.++++ ++.+.|+||||++++|++.++++|..+ +|.+|+ ++
T Consensus 243 ~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~------gI~~v~-----~v 311 (519)
T TIGR02339 243 VEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKA------GILAVR-----RV 311 (519)
T ss_pred ccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHC------CCEEEe-----cC
Confidence 678888777665 799999999999999999999999654 366676 67
Q ss_pred ccchHHHHHHHhCCeeeecccCccccCCCCCcccceeEEEEec---CeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHH
Q 011103 314 KSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITK---DSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQ 390 (493)
Q Consensus 314 ~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~~---~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~ 390 (493)
++++|+|||++|||++++ ++++++++.||+|++|++.+ ++|++|++|+++
T Consensus 312 ~~~~L~rIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~---------------------- 364 (519)
T TIGR02339 312 KKSDIEKLARATGAKIVS-----SIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNP---------------------- 364 (519)
T ss_pred CHHHHHHHHHHhCCEEeC-----chhhCChhhccCCceEEEEEECCeEEEEEEcCCCC----------------------
Confidence 789999999999999999 58888889999999999864 889999988653
Q ss_pred HHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHHH
Q 011103 391 KNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKI 469 (493)
Q Consensus 391 ~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~~ 469 (493)
..+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|.+|++++...++.+| +
T Consensus 365 -------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~ 430 (519)
T TIGR02339 365 -------------KAVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGGREQ-L 430 (519)
T ss_pred -------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHH-H
Confidence 367899999999999999999999999999999999 9999999999999999999877888787 5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 470 GAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 470 ~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
++++|++||+.||++||+|||+|+
T Consensus 431 ~~~~~a~aL~~ip~~L~~NaG~d~ 454 (519)
T TIGR02339 431 AIEAFADALEEIPRILAENAGLDP 454 (519)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCH
Confidence 899999999999999999999985
No 14
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.3e-79 Score=658.52 Aligned_cols=390 Identities=22% Similarity=0.350 Sum_probs=352.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCCc
Q 011103 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (493)
Q Consensus 40 ~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~GDGT 119 (493)
++++..|+.+|..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|+.++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~----a~ll~~~a~~qd~~~GDGT 90 (531)
T TIGR02347 15 DAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPT----ASMIARAATAQDDITGDGT 90 (531)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHHhhhhhcCcH
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCccc---ChH-HHHHHHHHhcCC------chhHhH
Q 011103 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREV---EDH-ELADVAAVSAGN------DYTVGK 189 (493)
Q Consensus 120 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v---~~~-~L~~va~ts~~~------~~~l~~ 189 (493)
||+|+||++||+++.+|+++|+||..|++||+.|.+.++++|+++++++ .+. .|.++|+|++++ ++.|++
T Consensus 91 TtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~ 170 (531)
T TIGR02347 91 TSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTE 170 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHH
Confidence 9999999999999999999999999999999999999999999998764 344 899999999875 789999
Q ss_pred HHHHHHHhhccCCc------eE--eecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCC----
Q 011103 190 MISDALQQVGRNGV------VT--IEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK---- 257 (493)
Q Consensus 190 li~~Ai~~v~~~g~------I~--v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~---- 257 (493)
++++|+..+++++. |. +..|++..|+ ++++|++|+++|.+|+| +++++||+|++++++++
T Consensus 171 iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds-~~v~Giv~~~~~~~~~~-------~~~~~n~~Ill~~~~le~~~~ 242 (531)
T TIGR02347 171 IVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDT-TLIRGLVLDHGARHPDM-------PRRVKNAYILTCNVSLEYEKT 242 (531)
T ss_pred HHHHHHHHHhhcCCCCChhHeEEEEecCCCcccc-EEEeeEEEecCcCCCCC-------ceeccCceEEEEeCCCCCCcc
Confidence 99999999988652 33 3688999999 99999999999999874 56889999999998754
Q ss_pred ---------CHHHH-----------HHHHHHHHHcCC-------C---EEEEecCchHHHHHHHHHhhccccceeeeeec
Q 011103 258 ---------NPKDM-----------FKILDSAVKEKY-------P---IVIVAEDIEQQALALLIRNKLRGVLKAAAIKA 307 (493)
Q Consensus 258 ---------~~~el-----------~~~le~i~~~g~-------~---lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~ 307 (493)
+++++ ..+++++.+.|. + +|+++++|++.++++|..+ +|+|++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~------~I~~i~- 315 (531)
T TIGR02347 243 EVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKE------GIMALR- 315 (531)
T ss_pred ccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHC------CceEEc-
Confidence 23332 335667777551 4 8999999999999999776 478887
Q ss_pred CcccccccchHHHHHHHhCCeeeecccCccccCCCCCcccceeEE---EEecCeEEEEecCCChhhHHHHHHHHHHHHhh
Q 011103 308 PAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKV---VITKDSTLIVTDGSTRAAVEKRISEIRSLAEI 384 (493)
Q Consensus 308 ~~~~~~~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v---~i~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~ 384 (493)
++++++|+|||++|||++++ +++++++++||+|++| ++++++|++|++|+++
T Consensus 316 ----rv~~~~le~ia~~tGa~~i~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~---------------- 370 (531)
T TIGR02347 316 ----RAKRRNMERLTLACGGEALN-----SVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNP---------------- 370 (531)
T ss_pred ----cCCHHHHHHHHHHhCCEEec-----ccccCCccccccceEEEEEEECCeEEEEEEcCCCC----------------
Confidence 55788999999999999998 5889999999999999 5678899999988654
Q ss_pred hhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcC
Q 011103 385 TEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLD 463 (493)
Q Consensus 385 ~~~~~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~ 463 (493)
.++||+|||+|+.+++|++|+++||++++++++++| +|||||++|++||.+|++++...+
T Consensus 371 -------------------~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~ 431 (531)
T TIGR02347 371 -------------------KSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVK 431 (531)
T ss_pred -------------------CeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCC
Confidence 378999999999999999999999999999999999 999999999999999999987788
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 464 NEEQKIGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 464 ~~~q~~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
+.+| +++++|++||+.||++||+|||+|+
T Consensus 432 ~~~~-~~i~~fa~ALe~ip~~La~NaG~d~ 460 (531)
T TIGR02347 432 GKAK-LGVEAFANALLVIPKTLAENSGLDA 460 (531)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 8888 5899999999999999999999985
No 15
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.8e-79 Score=660.69 Aligned_cols=394 Identities=25% Similarity=0.397 Sum_probs=360.9
Q ss_pred eccCCcHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhccc
Q 011103 34 VYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTND 113 (493)
Q Consensus 34 i~~g~~~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~ 113 (493)
..+| ++++..|++||..++++|++||||+||+|||+++.|+++|||||+||+++|+++||. |+|++++|++||+
T Consensus 10 ~~~~--~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~q~~ 83 (517)
T cd03343 10 RTSG--RDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPA----AKMLVEVAKTQDE 83 (517)
T ss_pred cccH--HHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHH----HHHHHHHHHHHHH
Confidence 3446 789999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC--hH-HHHHHHHHhcCCc------
Q 011103 114 LAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAGND------ 184 (493)
Q Consensus 114 ~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~-~L~~va~ts~~~~------ 184 (493)
++||||||+++|+++|++++.+++++|+||..|++||+.|.+.+++.|++++.+++ +. .|.++|++|++++
T Consensus 84 ~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~ 163 (517)
T cd03343 84 EVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAK 163 (517)
T ss_pred HhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999986 44 8999999999875
Q ss_pred hhHhHHHHHHHHhhccCCc---------eEe--ecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEec
Q 011103 185 YTVGKMISDALQQVGRNGV---------VTI--EKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD 253 (493)
Q Consensus 185 ~~l~~li~~Ai~~v~~~g~---------I~v--~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d 253 (493)
+.|++++++|+.++++++. |.+ ++|++++|| ++++|++|+++|.+|+| +..++||+|++++
T Consensus 164 ~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~v~~~~~~~~~m-------~~~~~n~~Illl~ 235 (517)
T cd03343 164 DKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDT-ELIRGIVIDKEVVHPGM-------PKRVENAKIALLD 235 (517)
T ss_pred HHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHc-ceeeeEEEeccCCCCCC-------ccccCCCcEEEEe
Confidence 8999999999999987532 544 799999999 99999999999999875 4578999999999
Q ss_pred cc-------------CCCHHHHHHH-----------HHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCc
Q 011103 254 KK-------------IKNPKDMFKI-----------LDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPA 309 (493)
Q Consensus 254 ~~-------------i~~~~el~~~-----------le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~ 309 (493)
++ +++++++.++ ++++.+.|+||||++++|+++++++|..+ +|+||+
T Consensus 236 ~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~------gI~~v~--- 306 (517)
T cd03343 236 APLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKA------GILAVR--- 306 (517)
T ss_pred ccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC------CcEEEE---
Confidence 98 5777777664 45889999999999999999999999754 467776
Q ss_pred ccccccchHHHHHHHhCCeeeecccCccccCCCCCcccceeEEEEe---cCeEEEEecCCChhhHHHHHHHHHHHHhhhh
Q 011103 310 FGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---KDSTLIVTDGSTRAAVEKRISEIRSLAEITE 386 (493)
Q Consensus 310 ~~~~~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~---~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~ 386 (493)
++++++|+|||++|||++++ ++++++++.||+|++|++. +++|++|++|+++
T Consensus 307 --~v~~~~l~~Ia~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~------------------ 361 (517)
T cd03343 307 --RVKKSDMEKLARATGAKIVT-----NIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNP------------------ 361 (517)
T ss_pred --eCCHHHHHHHHHHhCCEEec-----chhhCChhhCCccceEEEEEECCeEEEEEEcCCCC------------------
Confidence 66789999999999999999 5888999999999999975 7889999988654
Q ss_pred HHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcH
Q 011103 387 ERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNE 465 (493)
Q Consensus 387 ~~~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~ 465 (493)
..+||+|||+|+.+++|++|+++||++++|+++++| +|||||++|++++.+|++++...++.
T Consensus 362 -----------------~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~~ 424 (517)
T cd03343 362 -----------------KAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGR 424 (517)
T ss_pred -----------------ceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCCH
Confidence 267899999999999999999999999999999999 99999999999999999988778887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 466 EQKIGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 466 ~q~~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
+| +++++|++||+.||++||+|||+|+
T Consensus 425 ~~-~~~~~~~~aL~~ip~~L~~NaG~d~ 451 (517)
T cd03343 425 EQ-LAVEAFADALEEIPRTLAENAGLDP 451 (517)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 77 5899999999999999999999985
No 16
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.8e-79 Score=659.58 Aligned_cols=394 Identities=24% Similarity=0.367 Sum_probs=356.3
Q ss_pred eccCCcHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhccc
Q 011103 34 VYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTND 113 (493)
Q Consensus 34 i~~g~~~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~ 113 (493)
+.|| ++++..|++||..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+
T Consensus 18 ~~~~--~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~q~~ 91 (526)
T cd03339 18 RLKG--LEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQI----AKLLVELSKSQDD 91 (526)
T ss_pred cccH--HHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHH----HHHHHHHHHhhhh
Confidence 5567 889999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC----hH-HHHHHHHHhcCCc----
Q 011103 114 LAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE----DH-ELADVAAVSAGND---- 184 (493)
Q Consensus 114 ~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~----~~-~L~~va~ts~~~~---- 184 (493)
++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|++ +. .|.++|+|+++++
T Consensus 92 ~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~ 171 (526)
T cd03339 92 EIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSR 171 (526)
T ss_pred hhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccchhh
Confidence 99999999999999999999999999999999999999999999999999999885 23 7999999998853
Q ss_pred --hhHhHHHHHHHHhhccC-------C--ceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEec
Q 011103 185 --YTVGKMISDALQQVGRN-------G--VVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD 253 (493)
Q Consensus 185 --~~l~~li~~Ai~~v~~~-------g--~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d 253 (493)
+.|++++++|+..+.+. . .|.+.+|++++|| ++++|++|+++|.+|+| ++.++||||++++
T Consensus 172 ~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS-~~v~Givi~~~~~~~~m-------~~~~~n~kI~ll~ 243 (526)
T cd03339 172 CHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDT-KLVKGIVIDKDFSHPQM-------PKEVKDAKIAILT 243 (526)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHc-ceeeeEEEecccCCCCC-------CceecCCCEEEEE
Confidence 78999999999988541 1 1456799999999 99999999999999875 4467799999987
Q ss_pred cc-------------CCCHHH-----------HHHHHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCc
Q 011103 254 KK-------------IKNPKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPA 309 (493)
Q Consensus 254 ~~-------------i~~~~e-----------l~~~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~ 309 (493)
++ ++++++ +.++++++.+.|+||||++++|++.++++|..|+ |.||++
T Consensus 244 ~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~~-- 315 (526)
T cd03339 244 CPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNG------LPAVRW-- 315 (526)
T ss_pred ecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCC------CEEEEe--
Confidence 64 456665 5667889999999999999999999999998775 578874
Q ss_pred ccccccchHHHHHHHhCCeeeecccCccccCCCCCcccceeEEEE---e--cCeEEEEecCCChhhHHHHHHHHHHHHhh
Q 011103 310 FGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI---T--KDSTLIVTDGSTRAAVEKRISEIRSLAEI 384 (493)
Q Consensus 310 ~~~~~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i---~--~~~~~~~~g~~~~~~i~~~~~~l~~~~~~ 384 (493)
+++++|+|||++|||++++ ++++++++.||+|+.|+. + +++++||++|+++
T Consensus 316 ---v~~~~LerIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~---------------- 371 (526)
T cd03339 316 ---VGGVEIELIAIATGGRIVP-----RFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNS---------------- 371 (526)
T ss_pred ---CCHHHHHHHHHHhCCEEec-----chhhCChhhcccCceEEEEEecCCCcEEEEEECCCCC----------------
Confidence 4577899999999999999 588999999999999984 2 4688999988653
Q ss_pred hhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcC
Q 011103 385 TEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLD 463 (493)
Q Consensus 385 ~~~~~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~ 463 (493)
+.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|.+|++++...+
T Consensus 372 -------------------~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~ 432 (526)
T cd03339 372 -------------------KAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCS 432 (526)
T ss_pred -------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCC
Confidence 478999999999999999999999999999999998 999999999999999999987788
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 464 NEEQKIGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 464 ~~~q~~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
+.+| +++++|++||++||++||+|||+|+
T Consensus 433 ~~~~-~~~~~~a~aL~~ip~~L~~NaG~d~ 461 (526)
T cd03339 433 GIEQ-YAMRAFADALESIPLALAENSGLNP 461 (526)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 8777 5899999999999999999999985
No 17
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.4e-79 Score=660.13 Aligned_cols=395 Identities=24% Similarity=0.337 Sum_probs=354.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCCc
Q 011103 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (493)
Q Consensus 40 ~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~GDGT 119 (493)
++++..|++||..++++|++||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 7 ~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~----akll~~~a~~q~~~~GDGT 82 (527)
T cd03335 7 QDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKILVELAQLQDKEVGDGT 82 (527)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChH----HHHHHHHHHHHHHHhCCCc
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh-cCcccC--hH-HHHHHHHHhcCC------chhHhH
Q 011103 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKL-TSREVE--DH-ELADVAAVSAGN------DYTVGK 189 (493)
Q Consensus 120 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~-~s~~v~--~~-~L~~va~ts~~~------~~~l~~ 189 (493)
||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|++ +++|++ +. .|.++|+|++++ .+.|++
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~ 162 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFAN 162 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999996 899986 44 799999999873 489999
Q ss_pred HHHHHHHhhcc---CCc---------eEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCC
Q 011103 190 MISDALQQVGR---NGV---------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK 257 (493)
Q Consensus 190 li~~Ai~~v~~---~g~---------I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~ 257 (493)
++++|+..++. +|. |.+.+|++++|+ ++++|++|+++|.+| +|+++++||+|+++++++.
T Consensus 163 l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s-~li~Givi~~~~~~~-------~m~~~i~n~kIlll~~~Le 234 (527)
T cd03335 163 MVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKES-YLVNGYALNCTRASQ-------GMPTRVKNAKIACLDFNLQ 234 (527)
T ss_pred HHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhc-ceeeeEEEecccCCC-------CCcccccCCcEEEEeccCC
Confidence 99999999952 232 335799999999 999999999999887 4677899999999998764
Q ss_pred C-------------HHHH-----------HHHHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCccccc
Q 011103 258 N-------------PKDM-----------FKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (493)
Q Consensus 258 ~-------------~~el-----------~~~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~ 313 (493)
. ++++ .++++++.+.|+||||++++|++.++++|..+ +|++++ ++
T Consensus 235 ~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~------~I~~v~-----~v 303 (527)
T cd03335 235 KTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEA------GAMAVR-----RV 303 (527)
T ss_pred CCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHC------CcEEEE-----eC
Confidence 3 2332 34677888999999999999999999999876 467776 67
Q ss_pred ccchHHHHHHHhCCeeeecccCc-cccCCCCCcccceeEEE---EecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHH
Q 011103 314 KSHYLDDIAILTGGLVIRDEMGL-TLDKAGKEVLGTAIKVV---ITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERF 389 (493)
Q Consensus 314 ~~~~l~~ia~~tG~~ii~~~~~~-~~~~~~~~~lG~~~~v~---i~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~ 389 (493)
++++|+|||++|||+++++..++ ..+++++++||+|+.|+ +++++|++|++|++
T Consensus 304 ~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~---------------------- 361 (527)
T cd03335 304 KKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKK---------------------- 361 (527)
T ss_pred CHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCC----------------------
Confidence 88999999999999999964333 12345566899999999 67889999998864
Q ss_pred HHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHH
Q 011103 390 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQK 468 (493)
Q Consensus 390 ~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~ 468 (493)
++++||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++|+.+|+++++..++.+|
T Consensus 362 -------------~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~- 427 (527)
T cd03335 362 -------------RSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQ- 427 (527)
T ss_pred -------------CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHH-
Confidence 3588999999999999999999999999999999999 9999999999999999999888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 469 IGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 469 ~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
+++++|++||+.||++||+|||+|+
T Consensus 428 ~~i~~~a~aL~~ip~~La~NaG~d~ 452 (527)
T cd03335 428 LAIAEFAEALLVIPKTLAVNAAKDA 452 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 5899999999999999999999985
No 18
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.8e-79 Score=658.06 Aligned_cols=390 Identities=26% Similarity=0.397 Sum_probs=353.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCCc
Q 011103 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (493)
Q Consensus 40 ~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~GDGT 119 (493)
.+++..|++||..++++|++||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 26 ~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~----akll~~~a~~qd~~~GDGT 101 (532)
T TIGR02343 26 LEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPI----AKLMVELSKSQDDEIGDGT 101 (532)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHH----HHHHHHHHHHHHHHhcCCc
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCh----H-HHHHHHHHhcCC------chhHh
Q 011103 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED----H-ELADVAAVSAGN------DYTVG 188 (493)
Q Consensus 120 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~----~-~L~~va~ts~~~------~~~l~ 188 (493)
||+++|+++||+++.+|+++|+||+.|++||+.|.+.++++|+++++++++ . .|.++|+|++++ .+.|+
T Consensus 102 ttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls 181 (532)
T TIGR02343 102 TGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFA 181 (532)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999988742 3 799999999875 36899
Q ss_pred HHHHHHHHhhccC--C-------ceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEeccc----
Q 011103 189 KMISDALQQVGRN--G-------VVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK---- 255 (493)
Q Consensus 189 ~li~~Ai~~v~~~--g-------~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~---- 255 (493)
+++++|+..+... + .|.+.+|++++|| ++++|++|+++|.+|+| ++.++||||++++++
T Consensus 182 ~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds-~~v~Gi~i~~~~~~~~m-------~~~~~n~kI~l~~~~le~~ 253 (532)
T TIGR02343 182 EIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDT-KLIKGIIIDKDFSHPQM-------PKEVKDAKIAILTCPFEPP 253 (532)
T ss_pred HHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccc-eeEeeEEEecCcCCCCC-------CeeecCCcEEEEEeecccc
Confidence 9999999988541 1 2455799999999 99999999999999864 556789999998864
Q ss_pred ---------CCCHHHH-----------HHHHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCccccccc
Q 011103 256 ---------IKNPKDM-----------FKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKS 315 (493)
Q Consensus 256 ---------i~~~~el-----------~~~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~ 315 (493)
+++++++ .++++++.+.|+||||++++|++.++++|..|+ +.+|+ ++++
T Consensus 254 ~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~------i~~v~-----~~~~ 322 (532)
T TIGR02343 254 KPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQND------LPAVR-----WVGG 322 (532)
T ss_pred ccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCC------cEEEE-----cCCH
Confidence 5666666 667899999999999999999999999998885 56777 4457
Q ss_pred chHHHHHHHhCCeeeecccCccccCCCCCcccceeEEEEe-----cCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHH
Q 011103 316 HYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT-----KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQ 390 (493)
Q Consensus 316 ~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~-----~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~ 390 (493)
++|+|||++|||++++ +++++++++||+|++|+.. +++++++++|+++
T Consensus 323 ~~l~~Ia~~tGa~~i~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~---------------------- 375 (532)
T TIGR02343 323 HELELIAIATGGRIVP-----RFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNS---------------------- 375 (532)
T ss_pred HHHHHHHHHhCCEEec-----ccccCCHhHCcccceEEEEEecCCcceEEEEECCCCC----------------------
Confidence 7899999999999999 5889999999999999842 2578999988754
Q ss_pred HHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHHH
Q 011103 391 KNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKI 469 (493)
Q Consensus 391 ~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~~ 469 (493)
.++||+|||+|+.+++|.+|+++||+++++++++++ +|||||++|+++|++|++++...++.+| +
T Consensus 376 -------------~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~ 441 (532)
T TIGR02343 376 -------------KAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQ-Y 441 (532)
T ss_pred -------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHH-H
Confidence 378999999999999999999999999999999996 9999999999999999999888888887 5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 470 GAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 470 ~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
++++|++||++||++||+|||+++
T Consensus 442 ~i~~fa~ALe~ip~~La~NaG~d~ 465 (532)
T TIGR02343 442 AIRAFADALEEIPMALAENSGLDP 465 (532)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCH
Confidence 899999999999999999999985
No 19
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9e-80 Score=656.33 Aligned_cols=384 Identities=22% Similarity=0.359 Sum_probs=352.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCCc
Q 011103 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (493)
Q Consensus 40 ~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~GDGT 119 (493)
.+++..|+.+|..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|+.++|++||+++||||
T Consensus 11 ~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~----a~l~~~~a~~qd~~~GDGT 86 (484)
T cd03342 11 GQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPT----ASMIARAATAQDDITGDGT 86 (484)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHH----HHHHHHHHHHhhhHhCCCh
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC---hH-HHHHHHHHhcCCc------hhHhH
Q 011103 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE---DH-ELADVAAVSAGND------YTVGK 189 (493)
Q Consensus 120 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~---~~-~L~~va~ts~~~~------~~l~~ 189 (493)
||+++||++||+++.+++++|+||..|++||+.|.+.++++|++++.+++ +. .+.++|++|++++ +.|++
T Consensus 87 Tt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~ 166 (484)
T cd03342 87 TSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTE 166 (484)
T ss_pred hhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 55 8999999999875 89999
Q ss_pred HHHHHHHhhccCC-c-------eEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCCCHHH
Q 011103 190 MISDALQQVGRNG-V-------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKD 261 (493)
Q Consensus 190 li~~Ai~~v~~~g-~-------I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~e 261 (493)
++++|+..+++++ . |.+.+|+++.|+ ++++|++|+++|.+|+| +++++||+|+++|+++...++
T Consensus 167 l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds-~~i~G~~~~~~~~~~~m-------~~~~~n~~Ill~~~~le~~~~ 238 (484)
T cd03342 167 IVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDT-KLIRGLVLDHGARHPDM-------PKRVENAYILTCNVSLEYEKT 238 (484)
T ss_pred HHHHHHHHHhhcCCccChhHeEEEEecCCChhhc-eEEeeEEEecCCCCCCC-------CccccCceEEEEeCCCCCCcc
Confidence 9999999998865 1 445689999999 99999999999999875 567899999999999876643
Q ss_pred -HHHHHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCeeeecccCccccC
Q 011103 262 -MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDK 340 (493)
Q Consensus 262 -l~~~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~~~~~~~~ 340 (493)
+.. ..-.+|||++++|++.++++|..|+ |+||+ ++++++|+|||++|||++++ ++++
T Consensus 239 ~~~~------~~~~~lvi~~~~I~~~al~~l~~~~------I~av~-----~~~~~~l~~ia~~tGa~ii~-----~l~~ 296 (484)
T cd03342 239 EVNS------GFFYSVVINQKGIDPPSLDMLAKEG------ILALR-----RAKRRNMERLTLACGGVAMN-----SVDD 296 (484)
T ss_pred ccCc------EEEEEEEEeCCCccHHHHHHHHHCC------CeEEE-----eCCHHHHHHHHHHhCCEEec-----cccc
Confidence 211 1124699999999999999998874 78888 46788999999999999999 5899
Q ss_pred CCCCcccceeEE---EEecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhh
Q 011103 341 AGKEVLGTAIKV---VITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVE 417 (493)
Q Consensus 341 ~~~~~lG~~~~v---~i~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~~rl~~l~~~~~tI~l~G~t~~~ 417 (493)
+++++||+|+.| ++++++|++|++|+++ +++||+|||+|+.+
T Consensus 297 ~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~-----------------------------------~~~tI~lrg~t~~~ 341 (484)
T cd03342 297 LSPECLGYAGLVYERTLGEEKYTFIEGVKNP-----------------------------------KSCTILIKGPNDHT 341 (484)
T ss_pred CChhhCcccceEEEEEECCeEEEEEECCCCC-----------------------------------cEEEEEEeCCCHHH
Confidence 999999999999 4578899999998653 47899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 418 LKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 418 l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
++|.+|+++||++|+++++++| +|||||++|++++.+|++++...++++| +++++|++||+.||++||+|||+|+
T Consensus 342 l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~-~~i~~~a~Al~~ip~~La~NaG~d~ 417 (484)
T cd03342 342 ITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAK-LGVQAFADALLVIPKTLAENSGLDV 417 (484)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 9999999999999999999999 9999999999999999999887888787 5899999999999999999999985
No 20
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.4e-78 Score=653.92 Aligned_cols=393 Identities=22% Similarity=0.343 Sum_probs=357.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCCc
Q 011103 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (493)
Q Consensus 40 ~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~GDGT 119 (493)
.+++..|+.+|..++++|++||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~q~~~~GDGT 90 (522)
T cd03340 15 KGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPA----AKTLVDIAKSQDAEVGDGT 90 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHH----HHHHHHHHHHhHhHhCCCh
Confidence 679999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCh------H-HHHHHHHHhcC------Cchh
Q 011103 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED------H-ELADVAAVSAG------NDYT 186 (493)
Q Consensus 120 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~------~-~L~~va~ts~~------~~~~ 186 (493)
||+|+|+++||+++.+++++|+||+.|++||+.|.+.+++.|+++++++++ . .|.++|+|+++ ++++
T Consensus 91 tt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ 170 (522)
T cd03340 91 TSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEF 170 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHH
Confidence 999999999999999999999999999999999999999999999988864 3 69999999987 4689
Q ss_pred HhHHHHHHHHhhccCC---c--eEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEeccc------
Q 011103 187 VGKMISDALQQVGRNG---V--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK------ 255 (493)
Q Consensus 187 l~~li~~Ai~~v~~~g---~--I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~------ 255 (493)
|++++++|+.++++++ . |...+|++++|| ++++|++|+++|.+|+|.+ +++.++||+|++++++
T Consensus 171 l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds-~lv~Giv~~k~~~~~~~~~----~~~~~~n~kIll~~~~Le~~~~ 245 (522)
T cd03340 171 FAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDS-QLVNGVAFKKTFSYAGFEQ----QPKKFKNPKILLLNVELELKAE 245 (522)
T ss_pred HHHHHHHHHHHhcccCChhHheEeeecCCChhhc-eeeeeEEEecccCcccccc----CCccccCCeEEEEeCCCCCCcc
Confidence 9999999999998765 2 444699999999 8999999999999998744 4567999999999987
Q ss_pred -------CCCHHH-----------HHHHHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccch
Q 011103 256 -------IKNPKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHY 317 (493)
Q Consensus 256 -------i~~~~e-----------l~~~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~ 317 (493)
++++++ +.+.++.+.+.|+++|+++++|++.++++|..++ |++++ ++++++
T Consensus 246 ~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~------I~~~~-----~v~~~~ 314 (522)
T cd03340 246 KDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRD------IFCAG-----RVPEED 314 (522)
T ss_pred ccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCC------cEEEE-----eCCHHH
Confidence 345444 4556778899999999999999999999997764 56665 567889
Q ss_pred HHHHHHHhCCeeeecccCccccCCCCCcccceeEEE---EecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHH
Q 011103 318 LDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVV---ITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNIL 394 (493)
Q Consensus 318 l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~---i~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l 394 (493)
|+|||++|||++++ ++++++++.||+|+.|+ ++++++++|.+|..+
T Consensus 315 l~rIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~-------------------------- 363 (522)
T cd03340 315 LKRVAQATGGSIQT-----TVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKA-------------------------- 363 (522)
T ss_pred HHHHHHHHCCEEee-----ccccCCccccccceEEEEEEECCEEEEEEECCCCC--------------------------
Confidence 99999999999999 58889999999999998 467899999998643
Q ss_pred HHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHH
Q 011103 395 NERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEI 473 (493)
Q Consensus 395 ~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~ 473 (493)
..+||++||+|+..++|.+|+++||++++++++++| +|||||++|++++.+|++++...++++| +++++
T Consensus 364 ---------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~-~~~~~ 433 (522)
T cd03340 364 ---------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQ-LVINA 433 (522)
T ss_pred ---------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHH-HHHHH
Confidence 378999999999999999999999999999999998 9999999999999999999877778777 58999
Q ss_pred HHHHHHHHHHHHHHhcCCCC
Q 011103 474 FKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 474 ~a~AL~~i~~~L~~NaG~~~ 493 (493)
|++||+.||++|++|||+|+
T Consensus 434 fa~aL~~ip~~La~NaG~d~ 453 (522)
T cd03340 434 FAKALEIIPRQLCDNAGFDA 453 (522)
T ss_pred HHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999985
No 21
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-78 Score=654.99 Aligned_cols=390 Identities=21% Similarity=0.296 Sum_probs=354.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCCc
Q 011103 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (493)
Q Consensus 40 ~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~GDGT 119 (493)
++++..|+.+|..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----akll~~~a~~q~~~~GDGT 90 (525)
T TIGR02344 15 RKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPA----AKSMIELSRTQDEEVGDGT 90 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHH----HHHHHHHHHhhhhhccCCc
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC--hH-HHHHHHHHhcCC------chhHhHH
Q 011103 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAGN------DYTVGKM 190 (493)
Q Consensus 120 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~-~L~~va~ts~~~------~~~l~~l 190 (493)
||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|++++++++ +. .|.++++|++++ ++.|+++
T Consensus 91 tt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l 170 (525)
T TIGR02344 91 TSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDL 170 (525)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999886 33 799999988765 5899999
Q ss_pred HHHHHHhhccCC-------------ceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCC
Q 011103 191 ISDALQQVGRNG-------------VVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK 257 (493)
Q Consensus 191 i~~Ai~~v~~~g-------------~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~ 257 (493)
+++|+..+++++ .|.+.+|++++|| ++++|++|++++.++ +|+.+++||+|++++++++
T Consensus 171 ~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS-~lv~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le 242 (525)
T TIGR02344 171 ALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDS-CVLKGVMINKDVTHP-------KMRRYIENPRIVLLDCPLE 242 (525)
T ss_pred HHHHHHHhhccccCCCCccChhhceEEEEecCCChHhc-CcccceEEecccCCC-------CCccccCCCCEEEEecccc
Confidence 999999998653 1345689999998 999999999997764 4777899999999998764
Q ss_pred C-------------HHHHHHHH-----------HHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCccccc
Q 011103 258 N-------------PKDMFKIL-----------DSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (493)
Q Consensus 258 ~-------------~~el~~~l-----------e~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~ 313 (493)
. ++++.+++ +++.+.|++||+++++|++.++++|..+ +|+|++ ++
T Consensus 243 ~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~------~I~av~-----~v 311 (525)
T TIGR02344 243 YKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKA------NISAIR-----RV 311 (525)
T ss_pred cccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHC------CceEEe-----cC
Confidence 3 46666554 4788899999999999999999998664 478775 77
Q ss_pred ccchHHHHHHHhCCeeeecccCccccCCCCCcccc-eeEEEE---ecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHH
Q 011103 314 KSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGT-AIKVVI---TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERF 389 (493)
Q Consensus 314 ~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~-~~~v~i---~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~ 389 (493)
++++|+|||++|||++++ ++++++++.+|+ |+.+++ ++++|++|++|+++
T Consensus 312 ~~~~LerIa~~tGa~ii~-----~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~--------------------- 365 (525)
T TIGR02344 312 RKTDNNRIARACGATIVN-----RPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDP--------------------- 365 (525)
T ss_pred CHHHHHHHHHHhCCeEec-----chhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCC---------------------
Confidence 899999999999999999 588888999999 998887 46789999988654
Q ss_pred HHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHH
Q 011103 390 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQK 468 (493)
Q Consensus 390 ~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~ 468 (493)
..+||+|||+|+.+++|.+|+++||+++++++++++ +|||||++|++||.+|++++...++.+|
T Consensus 366 --------------~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~- 430 (525)
T TIGR02344 366 --------------KACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQ- 430 (525)
T ss_pred --------------CEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHH-
Confidence 378999999999999999999999999999999996 9999999999999999999878888887
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 469 IGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 469 ~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
+++++|++||+.||++||+|||+|+
T Consensus 431 ~~~~~~a~al~~ip~~La~NaG~d~ 455 (525)
T TIGR02344 431 WPYRAVADALEIIPRTLAQNCGVNV 455 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 5899999999999999999999984
No 22
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-78 Score=655.85 Aligned_cols=395 Identities=24% Similarity=0.340 Sum_probs=354.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCCc
Q 011103 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (493)
Q Consensus 40 ~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~GDGT 119 (493)
+++|..|++||..|+++|++||||+||+|||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 11 ~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~----akll~~~a~~qd~~~GDGT 86 (536)
T TIGR02340 11 QDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKILVELAQLQDREVGDGT 86 (536)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChH----HHHHHHHHHHHHHHhCCCh
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhc-CcccC--hH-HHHHHHHHhcC------CchhHhH
Q 011103 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLT-SREVE--DH-ELADVAAVSAG------NDYTVGK 189 (493)
Q Consensus 120 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~-s~~v~--~~-~L~~va~ts~~------~~~~l~~ 189 (493)
||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|++. ++|++ +. .|.++|+|+++ +++.|++
T Consensus 87 Tt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~ 166 (536)
T TIGR02340 87 TSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSN 166 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHH
Confidence 999999999999999999999999999999999999999999875 88887 44 89999999988 5689999
Q ss_pred HHHHHHHhhcc---CCc---------eEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCC
Q 011103 190 MISDALQQVGR---NGV---------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK 257 (493)
Q Consensus 190 li~~Ai~~v~~---~g~---------I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~ 257 (493)
++++|+..++. +|. |.+++|++++|+ ++++|++|+++|.+| +|+++++||+|++++++++
T Consensus 167 l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s-~~i~Gi~i~~~~~~~-------~m~~~~~n~kIli~~~~L~ 238 (536)
T TIGR02340 167 IVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARES-YLVKGYALNCTRASQ-------QMPKRIKKAKIACLDFNLQ 238 (536)
T ss_pred HHHHHHHHHhcccccCccccchHHeEEEEecCCCcccc-EEEEEEEEecccCCC-------CCcceecCCcEEEEecCCC
Confidence 99999999962 342 334799999888 999999999999886 4778899999999999764
Q ss_pred C-------------HHH-----------HHHHHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCccccc
Q 011103 258 N-------------PKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (493)
Q Consensus 258 ~-------------~~e-----------l~~~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~ 313 (493)
. +++ +.+.++.+.+.|++||+++++|++.++++|..++ +++++ ++
T Consensus 239 ~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~------I~~i~-----rv 307 (536)
T TIGR02340 239 KQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAG------AMGVR-----RC 307 (536)
T ss_pred CCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC------cEEEe-----cC
Confidence 3 222 2345777889999999999999999999998764 67776 66
Q ss_pred ccchHHHHHHHhCCeeeecccCc-cccCCCCCcccceeEEE---EecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHH
Q 011103 314 KSHYLDDIAILTGGLVIRDEMGL-TLDKAGKEVLGTAIKVV---ITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERF 389 (493)
Q Consensus 314 ~~~~l~~ia~~tG~~ii~~~~~~-~~~~~~~~~lG~~~~v~---i~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~ 389 (493)
++++|+|||++|||+++++..++ ..++++++.||+|+.|+ +++++|++|++|+++
T Consensus 308 ~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~--------------------- 366 (536)
T TIGR02340 308 KKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGR--------------------- 366 (536)
T ss_pred CHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCC---------------------
Confidence 78999999999999999975443 23455677799999999 678899999988654
Q ss_pred HHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHH
Q 011103 390 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQK 468 (493)
Q Consensus 390 ~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~ 468 (493)
.++||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++...++.+|
T Consensus 367 --------------~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~- 431 (536)
T TIGR02340 367 --------------KSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQ- 431 (536)
T ss_pred --------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhH-
Confidence 378999999999999999999999999999999999 9999999999999999998777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 469 IGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 469 ~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
+++++|++||+.||++||+|||+|+
T Consensus 432 ~~~~~fa~AL~~ip~~La~NaG~d~ 456 (536)
T TIGR02340 432 LAIAEFAEALLIIPKVLAVNAALDS 456 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 5899999999999999999999985
No 23
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.6e-78 Score=652.89 Aligned_cols=392 Identities=21% Similarity=0.311 Sum_probs=353.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCCc
Q 011103 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (493)
Q Consensus 40 ~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~GDGT 119 (493)
.+++..|+.+|..++++|++||||+||||||+++.|+++|||||+||+++|+++||+ ++|++++|++||+++||||
T Consensus 7 ~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~----a~ll~~~a~~q~~~~GDGT 82 (515)
T cd03338 7 ADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPA----AKMLVELSKAQDIEAGDGT 82 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHH----HHHHHHHHHHHHhHhcCCc
Confidence 578999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC--hH-HHHHHHHHhcC------CchhHhHH
Q 011103 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAG------NDYTVGKM 190 (493)
Q Consensus 120 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~-~L~~va~ts~~------~~~~l~~l 190 (493)
||+++|+++|++++.+++++|+||..|++||+.|.+.++++|++++.+++ +. .|.++|+||++ +++.|+++
T Consensus 83 tt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~l 162 (515)
T cd03338 83 TSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPI 162 (515)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999886 44 89999999998 45889999
Q ss_pred HHHHHHhhccCCc----------eEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccC----
Q 011103 191 ISDALQQVGRNGV----------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI---- 256 (493)
Q Consensus 191 i~~Ai~~v~~~g~----------I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i---- 256 (493)
+++|+.++++++. |.+++|++++|| ++++|++|+++|.+|++ +++.++||+++++++++
T Consensus 163 i~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds-~lv~Giv~~k~~~~~~~------~p~~i~n~ki~ll~~~le~~~ 235 (515)
T cd03338 163 AVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDT-ELVDGLVFTQKASKKAG------GPTRIEKAKIGLIQFCLSPPK 235 (515)
T ss_pred HHHHHHHhhcccccCcCCHHHeEEEEecCCChhhc-eeeeeEEEeccccCcCC------CCccccCCcEEEEeccccccc
Confidence 9999999998763 666799999999 99999999999998753 24567899999987753
Q ss_pred ---------CCH-----------HHHHHHHHHHHHcCCCEEEEecCc-----hHHHHHHHHHhhccccceeeeeecCccc
Q 011103 257 ---------KNP-----------KDMFKILDSAVKEKYPIVIVAEDI-----EQQALALLIRNKLRGVLKAAAIKAPAFG 311 (493)
Q Consensus 257 ---------~~~-----------~el~~~le~i~~~g~~lvii~~~i-----~~~al~~L~~n~~~g~~~i~aV~~~~~~ 311 (493)
+++ +++.++++.+.+.|+||||++++| ++.++++|.. .+|+||+
T Consensus 236 ~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~------~~I~av~----- 304 (515)
T cd03338 236 TDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAK------LKIMVVK----- 304 (515)
T ss_pred cccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHH------CCceEEe-----
Confidence 233 345567889999999999999998 5666665543 3689887
Q ss_pred ccccchHHHHHHHhCCeeeecccCccccCCCCCcccceeEEEEe---cCeEEEEecCCChhhHHHHHHHHHHHHhhhhHH
Q 011103 312 ERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---KDSTLIVTDGSTRAAVEKRISEIRSLAEITEER 388 (493)
Q Consensus 312 ~~~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~---~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~ 388 (493)
++++++|+|||++|||++++ ++++++++.||+|+.|++. +++++++.+|.+
T Consensus 305 ~~~~~~LerIa~~tGa~ii~-----sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~--------------------- 358 (515)
T cd03338 305 DIEREEIEFICKTIGCKPVA-----SIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKN--------------------- 358 (515)
T ss_pred cCCHHHHHHHHHHHCCEEec-----ccccCCHhhCCCCceEEEEEECCeEEEEEEecCC---------------------
Confidence 67889999999999999999 5888888999999999974 457888988753
Q ss_pred HHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHH
Q 011103 389 FQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQ 467 (493)
Q Consensus 389 ~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q 467 (493)
+++++||+|||+|+.+++|++|+++||++++++++++| +|||||++|++|+.+|++++...++.+|
T Consensus 359 -------------~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~ 425 (515)
T cd03338 359 -------------PGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQ 425 (515)
T ss_pred -------------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHH
Confidence 24688999999999999999999999999999999999 9999999999999999999877778777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 468 KIGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 468 ~~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
+++++|++||+.||++||+|||+|+
T Consensus 426 -~~~~~~a~al~~ip~~L~~NaG~d~ 450 (515)
T cd03338 426 -YCVRAFADALEVIPYTLAENAGLNP 450 (515)
T ss_pred -HHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 5899999999999999999999985
No 24
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.6e-78 Score=649.10 Aligned_cols=392 Identities=23% Similarity=0.321 Sum_probs=353.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCCc
Q 011103 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (493)
Q Consensus 40 ~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~GDGT 119 (493)
.+++..|+.+|..++++|++||||+||+|||+++.| ++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 17 ~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~----a~ll~~~a~~q~~~~GDGT 91 (522)
T TIGR02345 17 KGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPA----AKTLVDIAKSQDSEVGDGT 91 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChH----HHHHHHHHHHHHHHhCCCc
Confidence 789999999999999999999999999999999989 99999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC-----hH-HHHHHHHHhcC------CchhH
Q 011103 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE-----DH-ELADVAAVSAG------NDYTV 187 (493)
Q Consensus 120 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~-----~~-~L~~va~ts~~------~~~~l 187 (493)
||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ +. .|.++|+|+++ +++.|
T Consensus 92 Tt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l 171 (522)
T TIGR02345 92 TSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFF 171 (522)
T ss_pred hhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999987 33 79999999987 46899
Q ss_pred hHHHHHHHHhhccCC------ceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCC----
Q 011103 188 GKMISDALQQVGRNG------VVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK---- 257 (493)
Q Consensus 188 ~~li~~Ai~~v~~~g------~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~---- 257 (493)
++++++|+.++++++ .|.+.+|++++|| ++++|++|+++|.+|||.+ ++.+++||+|+++|++++
T Consensus 172 ~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds-~~v~Giv~~~~~~~~~~~~----~~~~~~n~kIll~~~~Le~~~~ 246 (522)
T TIGR02345 172 SKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDS-VLVNGVAFKKTFSYAGFEQ----QPKKFANPKILLLNVELELKAE 246 (522)
T ss_pred HHHHHHHHHHHhhccCChhHheEEeecCCCHHhc-ceecceEEecccCcccccc----CCceeccceEEEEecCcccCcc
Confidence 999999999998652 2444599999999 7999999999999998754 456899999999998753
Q ss_pred ---------CHHHH-----------HHHHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccch
Q 011103 258 ---------NPKDM-----------FKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHY 317 (493)
Q Consensus 258 ---------~~~el-----------~~~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~ 317 (493)
+++++ .+.++.+.+.|+++|+++++|++.++++|..+ +|++++ ++.+++
T Consensus 247 ~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~------~I~~~~-----~v~~~d 315 (522)
T TIGR02345 247 KDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADH------NIFCAG-----RVSDED 315 (522)
T ss_pred ccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHC------CcEEEe-----cCCHHH
Confidence 34442 33466778889999999999999999999766 467765 567889
Q ss_pred HHHHHHHhCCeeeecccCccccCCCCCcccceeEEEE---ecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHH
Q 011103 318 LDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI---TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNIL 394 (493)
Q Consensus 318 l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i---~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l 394 (493)
+++++++|||++++ ++++++++.||+|+.++. .++++++|.||+++
T Consensus 316 l~ria~~tga~ii~-----~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~-------------------------- 364 (522)
T TIGR02345 316 LKRVVKACGGSIQS-----TTSDLEADVLGTCALFEERQIGSERYNYFTGCPHA-------------------------- 364 (522)
T ss_pred HHHHHHHhCCeEEc-----chhhCChhhccCCceEEEEEECCeEEEEEEcCCCC--------------------------
Confidence 99999999999999 588888899999999986 36789999887543
Q ss_pred HHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHH
Q 011103 395 NERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEI 473 (493)
Q Consensus 395 ~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~ 473 (493)
.++||+|||+|+.+++|++|+++||+++++++++++ +|||||++|++++.+|++++...++.+| +++++
T Consensus 365 ---------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~-~~i~~ 434 (522)
T TIGR02345 365 ---------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQ-LIIEA 434 (522)
T ss_pred ---------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHH-HHHHH
Confidence 378999999999999999999999999999999985 9999999999999999998877788787 58999
Q ss_pred HHHHHHHHHHHHHHhcCCCC
Q 011103 474 FKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 474 ~a~AL~~i~~~L~~NaG~~~ 493 (493)
|++||++||++||+|||+|+
T Consensus 435 ~a~aL~~ip~~La~NaG~d~ 454 (522)
T TIGR02345 435 FAKALEIIPRSLCENAGFDS 454 (522)
T ss_pred HHHHHHHHHHHHHHHCCCCH
Confidence 99999999999999999985
No 25
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-79 Score=593.61 Aligned_cols=410 Identities=21% Similarity=0.313 Sum_probs=371.3
Q ss_pred CCcceEEeecCCCCCCCCCCCCccccccceeccCCcHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecCh
Q 011103 4 LSTPIFAISFKNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDG 83 (493)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG 83 (493)
|.+||++++++++.+++..| .-+|+.+|..+++.++|||||+|+||+|+++.|+++|||||
T Consensus 2 m~~~ii~lkegtd~sqGk~Q-------------------lvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDG 62 (543)
T KOG0361|consen 2 MQPPIILLKEGTDPSQGKGQ-------------------LVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDG 62 (543)
T ss_pred CCCCEEEeecccCcccCchh-------------------hhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCc
Confidence 56899999999999984433 66899999999999999999999999999999999999999
Q ss_pred HHHhccccccCcccchHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh
Q 011103 84 ETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKL 163 (493)
Q Consensus 84 ~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~ 163 (493)
+||+|.+++-||+ |+.|+++|++||.|+||||||||+||+|+|+++..+++.|+||..|+++|++|...+++.|++
T Consensus 63 ATIlKlldivhPa----aktlVdia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~e 138 (543)
T KOG0361|consen 63 ATILKLLDIVHPA----AKTLVDIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKE 138 (543)
T ss_pred HHHHHHHhhcChh----HHHHHHHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCh--H-----HHHHHHHHhcCC------chhHhHHHHHHHHhhccCC---c--eEeecCCCcccceeeeeceEEe
Q 011103 164 TSREVED--H-----ELADVAAVSAGN------DYTVGKMISDALQQVGRNG---V--VTIEKGKCTENSLEIVEGMRFD 225 (493)
Q Consensus 164 ~s~~v~~--~-----~L~~va~ts~~~------~~~l~~li~~Ai~~v~~~g---~--I~v~~G~~~~ds~~~i~G~~~~ 225 (493)
+++.++. + .|++.|.|++++ +++|+++|+||+..+..+. . |++++||+++|| .+++|+.|+
T Consensus 139 lav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS-~lv~GVAFk 217 (543)
T KOG0361|consen 139 LAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDS-LLVNGVAFK 217 (543)
T ss_pred heeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchh-hhccceeee
Confidence 9998872 1 688999998864 6899999999999998542 1 678899999999 799999999
Q ss_pred cccCCCccccCcCCceeEecceeEEEeccc-------------CCCHHHHHH-----------HHHHHHHcCCCEEEEec
Q 011103 226 RGFLSPYFVTDRQKRTVEFHDGKLLLVDKK-------------IKNPKDMFK-----------ILDSAVKEKYPIVIVAE 281 (493)
Q Consensus 226 ~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~-------------i~~~~el~~-----------~le~i~~~g~~lvii~~ 281 (493)
+.|....| ++.|+.+.||||+++|.+ +.+++++.. .|++++.+|.++|+..-
T Consensus 218 KtFsYAGf----EqqPKk~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkL 293 (543)
T KOG0361|consen 218 KTFSYAGF----EQQPKKFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKL 293 (543)
T ss_pred ehccccch----hhCccccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecc
Confidence 99988876 455678999999999853 456666544 47889999999999999
Q ss_pred CchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCeeeecccCccccCCCCCcccceeEEE---EecCe
Q 011103 282 DIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVV---ITKDS 358 (493)
Q Consensus 282 ~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~---i~~~~ 358 (493)
.|.|.|.++|+... |. +.|+++.++|.|+..+|||++.+ +..++.++.||.|..++ ++.++
T Consensus 294 pIGD~ATQyFAdrd------iF-----CAGRV~~eDl~Rv~~acGGsi~t-----t~~~i~~~~LG~C~~FeE~QvG~eR 357 (543)
T KOG0361|consen 294 PIGDLATQYFADRD------IF-----CAGRVPEEDLNRVMQACGGSIQT-----TVSDIKEEVLGTCALFEERQVGGER 357 (543)
T ss_pred cchHHHHHHhhccC------ce-----ecCcCCHHHHHHHHHhcCcchhh-----hhhhcchhhcchhhhHHHHhhcchh
Confidence 99999999987653 22 34688899999999999999998 47888899999999998 47899
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhc
Q 011103 359 TLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEE 438 (493)
Q Consensus 359 ~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~ 438 (493)
|.+|+||+.. ..||+++||+.++.++|.+|++|||++++|.|+++
T Consensus 358 yN~Fegcp~a-----------------------------------ktcTliLRGgaeqfieE~eRSlHDAImIVrralkn 402 (543)
T KOG0361|consen 358 YNLFEGCPKA-----------------------------------KTCTLILRGGAEQFIEETERSLHDAIMIVRRALKN 402 (543)
T ss_pred hhhhcCCCcc-----------------------------------ceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhcc
Confidence 9999999753 47899999999999999999999999999999999
Q ss_pred C-ccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 439 G-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 439 g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
. +|+|||++||++|++|++++.++.++.|. .+.+|++|||.||++||+|||+++
T Consensus 403 ~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~-~i~A~akalEvIPrqLc~NaGfDa 457 (543)
T KOG0361|consen 403 DSVVAGGGAIEMELSKYLRDYSRTIAGKQQL-FINAYAKALEVIPRQLCDNAGFDA 457 (543)
T ss_pred CcEeeCCceeeehHHHHHHHhhcccCcHHHH-HHHHHHHHHHHhHHHHhhhcCCcH
Confidence 8 99999999999999999999999998886 599999999999999999999974
No 26
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=1.4e-77 Score=646.55 Aligned_cols=389 Identities=21% Similarity=0.334 Sum_probs=352.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCceEeecC-----CCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccc
Q 011103 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNK-----YGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDL 114 (493)
Q Consensus 40 ~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~-----~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~~ 114 (493)
+++|..|+.||..++++|+|||||+||+|||+++ .|+++|||||+||+++|+++||. |+|++++|++||++
T Consensus 21 ~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~----akll~~~a~~qd~~ 96 (533)
T PTZ00212 21 ETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPA----AKILVDISKTQDEE 96 (533)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHH----HHHHHHHHHhhhhh
Confidence 7899999999999999999999999999999998 59999999999999999999997 99999999999999
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCh-----H-HHHHHHHHhcCC-----
Q 011103 115 AGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED-----H-ELADVAAVSAGN----- 183 (493)
Q Consensus 115 ~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~-----~-~L~~va~ts~~~----- 183 (493)
+||||||+|+||++||+++.+++++|+||+.|++||+.|.+.++++|+++++|+++ . .|.++|+|++++
T Consensus 97 ~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~ 176 (533)
T PTZ00212 97 VGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTV 176 (533)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhcccccch
Confidence 99999999999999999999999999999999999999999999999999998864 3 789999988765
Q ss_pred -chhHhHHHHHHHHhhccC----C-ceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccC-
Q 011103 184 -DYTVGKMISDALQQVGRN----G-VVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI- 256 (493)
Q Consensus 184 -~~~l~~li~~Ai~~v~~~----g-~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i- 256 (493)
.+.|++++++|+..+... . .|.+.+|++++|| ++++|+++++++.+ .|+++++||+|+++|+++
T Consensus 177 ~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds-~lv~G~v~~~~~~~--------~~~~~i~n~kIll~~~~Le 247 (533)
T PTZ00212 177 EKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDS-YLEDGFILEKKIGV--------GQPKRLENCKILVANTPMD 247 (533)
T ss_pred hHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcccc-EEEEeEEEecccCC--------CCCccccCCcEEEEeCCCC
Confidence 378999999999988542 1 3556799999999 89999999988643 256789999999999985
Q ss_pred -------------CCHHHHHH-----------HHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccc
Q 011103 257 -------------KNPKDMFK-----------ILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGE 312 (493)
Q Consensus 257 -------------~~~~el~~-----------~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~ 312 (493)
++++++.. .++.+.+.|+++|+++++|++.++++|..+ +|+||+ +
T Consensus 248 ~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~------~I~avr-----~ 316 (533)
T PTZ00212 248 TDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEA------GIMAIE-----H 316 (533)
T ss_pred CCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC------CCEEEe-----c
Confidence 56655432 467788999999999999999999998766 478887 4
Q ss_pred cccchHHHHHHHhCCeeeecccCccccCCCCCcccceeEEE---EecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHH
Q 011103 313 RKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVV---ITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERF 389 (493)
Q Consensus 313 ~~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~---i~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~ 389 (493)
.++++++|||++|||++++ +++++++++||+|+.|+ +++++|++|.+|..
T Consensus 317 v~~~~l~rIa~~tGa~iis-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~---------------------- 369 (533)
T PTZ00212 317 ADFDGMERLAAALGAEIVS-----TFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAK---------------------- 369 (533)
T ss_pred CCHHHHHHHHHHhCCEEee-----cCCCCCHHHccCCceEEEEEECCeEEEEEEccCC----------------------
Confidence 5678999999999999999 58889999999999998 67889999998753
Q ss_pred HHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHH
Q 011103 390 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQK 468 (493)
Q Consensus 390 ~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~ 468 (493)
++++||+|||+|+.+++|++|+++|||+++|+++++| +|||||++|+++|.+|+++++..++.+|
T Consensus 370 -------------~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~- 435 (533)
T PTZ00212 370 -------------GEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKS- 435 (533)
T ss_pred -------------CCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHH-
Confidence 4588999999999999999999999999999999998 9999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 469 IGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 469 ~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
+++++|++||++||++||+|||+|+
T Consensus 436 ~~i~~~a~aL~~ip~~La~NaG~d~ 460 (533)
T PTZ00212 436 LAIEAFAKALRQIPTIIADNGGYDS 460 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 5899999999999999999999985
No 27
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.4e-77 Score=644.75 Aligned_cols=392 Identities=21% Similarity=0.326 Sum_probs=348.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCCc
Q 011103 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (493)
Q Consensus 40 ~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~GDGT 119 (493)
.+++..|+.+|..++++|++||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++||+++||||
T Consensus 8 ~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~----akll~~~a~~qd~~~GDGT 83 (517)
T TIGR02342 8 TDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPA----AKMLVELSKAQDIEAGDGT 83 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChH----HHHHHHHHHHHHHHhCCCc
Confidence 668899999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC--hH-HHHHHHHHhcCC------chhHhHH
Q 011103 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAGN------DYTVGKM 190 (493)
Q Consensus 120 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~-~L~~va~ts~~~------~~~l~~l 190 (493)
||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|+++++|++ +. .|.++|+|++++ .+.|+++
T Consensus 84 tt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l 163 (517)
T TIGR02342 84 TSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPL 163 (517)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999886 44 799999999875 3678999
Q ss_pred HHHHHHhhccC---Cc-------eEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccC----
Q 011103 191 ISDALQQVGRN---GV-------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI---- 256 (493)
Q Consensus 191 i~~Ai~~v~~~---g~-------I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i---- 256 (493)
+++|+..++++ +. |.+..|+++.|+ ++++|++|+++|.++ .+|++.++||+|+++++++
T Consensus 164 ~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds-~li~Givl~k~~~~~------~~mpk~i~n~kI~ll~~~Le~~~ 236 (517)
T TIGR02342 164 AVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDT-ELIEGLVFTQKASRS------AGGPTRIEKAKIGLIQFQISPPK 236 (517)
T ss_pred HHHHHHHHhccccCCccCHHHeeEEeccCCChhhc-EEEeeEEEecccccc------CCCCccccCCcEEEEecCCCCCc
Confidence 99999999762 32 334589999999 999999999999874 2466788999999998753
Q ss_pred ---------CCH-----------HHHHHHHHHHHHcCCCEEEEecCc-----hHHHHHHHHHhhccccceeeeeecCccc
Q 011103 257 ---------KNP-----------KDMFKILDSAVKEKYPIVIVAEDI-----EQQALALLIRNKLRGVLKAAAIKAPAFG 311 (493)
Q Consensus 257 ---------~~~-----------~el~~~le~i~~~g~~lvii~~~i-----~~~al~~L~~n~~~g~~~i~aV~~~~~~ 311 (493)
+++ +++.++++++.+.|+|||||+++| ++.++++|.. .+|+||+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~------~~I~av~----- 305 (517)
T TIGR02342 237 TDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAK------MKIMVVK----- 305 (517)
T ss_pred ccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhh------CCceEEe-----
Confidence 232 235567889999999999999999 5656555533 3689987
Q ss_pred ccccchHHHHHHHhCCeeeecccCccccCCCCCcccceeEEE-E--ecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHH
Q 011103 312 ERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVV-I--TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEER 388 (493)
Q Consensus 312 ~~~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~-i--~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~ 388 (493)
++++++|+|||++|||++++ +++++++++||+|+.|+ + +++.++++.+|.+
T Consensus 306 ~v~~~~LerIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~--------------------- 359 (517)
T TIGR02342 306 DIEREEVEFICKTIGCKPIA-----SIDHFTADKLGSAELVEEVTTDGGKIIKITGIQN--------------------- 359 (517)
T ss_pred cCCHHHHHHHHHHHCCEEEc-----chhhcCcccCcCCceEEEEEECCeEEEEEEccCC---------------------
Confidence 67889999999999999999 58888899999999999 3 3556778887743
Q ss_pred HHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHH
Q 011103 389 FQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQ 467 (493)
Q Consensus 389 ~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q 467 (493)
+++++||+|||+|+.+++|++|+++||+++++++++++ +|||||++|+++|.+|++++...++.+|
T Consensus 360 -------------~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~ 426 (517)
T TIGR02342 360 -------------AGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVES 426 (517)
T ss_pred -------------CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHH
Confidence 24689999999999999999999999999999999985 9999999999999999999877888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 468 KIGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 468 ~~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
+++++|++||++||++||+|||+|+
T Consensus 427 -~~i~~~a~al~~ip~~La~NaG~d~ 451 (517)
T TIGR02342 427 -YCVRAFADALEVIPYTLAENAGLNP 451 (517)
T ss_pred -HHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 5899999999999999999999985
No 28
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.5e-77 Score=639.09 Aligned_cols=373 Identities=20% Similarity=0.310 Sum_probs=342.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCCc
Q 011103 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (493)
Q Consensus 40 ~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~GDGT 119 (493)
++++..|+.+|..+++++++||||+||+|||+++.|+++|||||+||+++|+++||. |+|++++|++||+++||||
T Consensus 15 ~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~q~~~~GDGT 90 (480)
T cd03337 15 RKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPA----AKSMIELSRTQDEEVGDGT 90 (480)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHhHHHHhCCCc
Confidence 789999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC--hH-HHHHHHHHhcC------CchhHhHH
Q 011103 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAG------NDYTVGKM 190 (493)
Q Consensus 120 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~-~L~~va~ts~~------~~~~l~~l 190 (493)
||+++|+++||+++.+++++|+||..|++||+.|.+.++++|++++++++ +. .|.++++|+++ +++.|+++
T Consensus 91 tt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~l 170 (480)
T cd03337 91 TSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNL 170 (480)
T ss_pred chhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 44 79999999998 45799999
Q ss_pred HHHHHHhhccC--Cc-----------eEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCC
Q 011103 191 ISDALQQVGRN--GV-----------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK 257 (493)
Q Consensus 191 i~~Ai~~v~~~--g~-----------I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~ 257 (493)
+++|+..++++ +. |.+.+|+++.|| ++++|++|++++.+| +|+.+++||+|+++++++.
T Consensus 171 v~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds-~li~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le 242 (480)
T cd03337 171 ALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDS-RVLDGVMLNKDVTHP-------KMRRRIENPRIVLLDCPLE 242 (480)
T ss_pred HHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhc-ccccceEEeccCCCC-------CCCcEecCCCEEEEecCcc
Confidence 99999999864 21 345679999998 999999999998876 4778899999999999876
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCeeeecccCcc
Q 011103 258 NPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLT 337 (493)
Q Consensus 258 ~~~el~~~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~~~~~ 337 (493)
. |||++++|++.++++|..| +|+||+ ++++++|+|||++|||++++ +
T Consensus 243 ~-----------------lvi~~k~I~d~al~~L~~~------~I~~v~-----~v~~~~L~rIa~~tGa~ii~-----~ 289 (480)
T cd03337 243 Y-----------------LVITEKGVSDLAQHYLVKA------GITALR-----RVRKTDNNRIARACGATIVN-----R 289 (480)
T ss_pred e-----------------EEEeCCCccHHHHHHHHHC------CcEEEE-----eCCHHHHHHHHHHHCCEEec-----c
Confidence 5 9999999999999999887 478887 57889999999999999999 4
Q ss_pred ccCCCCCcccce-eEEEE---ecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccC
Q 011103 338 LDKAGKEVLGTA-IKVVI---TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQ 413 (493)
Q Consensus 338 ~~~~~~~~lG~~-~~v~i---~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~~rl~~l~~~~~tI~l~G~ 413 (493)
+++++++.||+| +.+++ +++++++|++|+++ ..+||+|||+
T Consensus 290 ~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~-----------------------------------~~~TIllrG~ 334 (480)
T cd03337 290 PEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP-----------------------------------KACTILLRGA 334 (480)
T ss_pred hhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC-----------------------------------CEEEEEEECC
Confidence 888888999994 55443 45788999988653 4789999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 011103 414 TVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGPI 492 (493)
Q Consensus 414 t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~~a~AL~~i~~~L~~NaG~~ 492 (493)
|+.+++|.+|+++||+++++++++++ +|||||++||++|.+|++++.+.++.+| +++++|++||++||++||+|||++
T Consensus 335 t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~-~~~~~~a~al~~ip~~La~NaG~d 413 (480)
T cd03337 335 SKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQ-WPYKAVASALEVIPRTLAQNCGAN 413 (480)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999996 9999999999999999998888888888 589999999999999999999998
Q ss_pred C
Q 011103 493 Q 493 (493)
Q Consensus 493 ~ 493 (493)
+
T Consensus 414 ~ 414 (480)
T cd03337 414 V 414 (480)
T ss_pred H
Confidence 4
No 29
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.9e-77 Score=638.48 Aligned_cols=389 Identities=22% Similarity=0.338 Sum_probs=350.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCceEeecC--CCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCC
Q 011103 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNK--YGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGD 117 (493)
Q Consensus 40 ~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~--~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~GD 117 (493)
+++++.|+.||..++++|+|||||+||+|||+++ .|+++|||||+||+++|+++||. |+|++++|++||+++||
T Consensus 12 ~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~qd~~~GD 87 (517)
T cd03336 12 ETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPA----AKVLVDISKVQDDEVGD 87 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChH----HHHHHHHHHHHHhHhCC
Confidence 7899999999999999999999999999999998 59999999999999999999997 99999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC-----hH-HHHHHHHHhcCC------ch
Q 011103 118 GCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE-----DH-ELADVAAVSAGN------DY 185 (493)
Q Consensus 118 GTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~-----~~-~L~~va~ts~~~------~~ 185 (493)
||||+|+||++||+++.+++++|+||..|++||+.|.+.++++|++++++++ +. .|.++|+|++++ ++
T Consensus 88 GTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~ 167 (517)
T cd03336 88 GTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKE 167 (517)
T ss_pred ChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccccchhHH
Confidence 9999999999999999999999999999999999999999999999999884 13 789999987764 58
Q ss_pred hHhHHHHHHHHhhccC----C-ceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCC---
Q 011103 186 TVGKMISDALQQVGRN----G-VVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIK--- 257 (493)
Q Consensus 186 ~l~~li~~Ai~~v~~~----g-~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~--- 257 (493)
.|++++++|+.+++.. . .|.+.+|++++|| ++++|+++++++.+ .++++++||+|++++++++
T Consensus 168 ~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds-~l~~G~v~~~~~~~--------~~~~~~~n~kIli~~~~le~~~ 238 (517)
T cd03336 168 HFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDS-YLDEGFLLDKKIGV--------NQPKRIENAKILIANTPMDTDK 238 (517)
T ss_pred HHHHHHHHHHHHhhccCCccceeEEEccCCCccce-EEEeeEEEecccCC--------CCCCeeccccEEEEecCCCccc
Confidence 9999999999999642 1 3455689999999 89999999988643 2467899999999998654
Q ss_pred -----------CHHHHHH-----------HHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCccccccc
Q 011103 258 -----------NPKDMFK-----------ILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKS 315 (493)
Q Consensus 258 -----------~~~el~~-----------~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~ 315 (493)
+++++.+ .++.+.+.|++++++++.|++.++++|..+ +|+||++|+ +
T Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~------~I~av~~v~-----~ 307 (517)
T cd03336 239 IKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADA------GIMAIEHAD-----F 307 (517)
T ss_pred ccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHC------CcEEEecCC-----H
Confidence 5555532 467788999999999999999999998766 479998765 4
Q ss_pred chHHHHHHHhCCeeeecccCccccCCCCCcccceeEEEE---ecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHH
Q 011103 316 HYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI---TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKN 392 (493)
Q Consensus 316 ~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i---~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~ 392 (493)
++|+|||++|||++++ ++++++++.||+|+.|+. +++++++|.+|+.
T Consensus 308 ~~L~rIa~~tGa~ii~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~------------------------- 357 (517)
T cd03336 308 DGVERLALVTGGEIAS-----TFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAA------------------------- 357 (517)
T ss_pred HHHHHHHHHhCCEEec-----ccCCCCcccccccceEEEEEECCeEEEEEEccCC-------------------------
Confidence 5799999999999999 588999999999999985 4678999998854
Q ss_pred HHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHHHHH
Q 011103 393 ILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGA 471 (493)
Q Consensus 393 ~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~ 471 (493)
++.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|.+|++++++.++++| +++
T Consensus 358 ----------~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i 426 (517)
T cd03336 358 ----------GEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKS-LAI 426 (517)
T ss_pred ----------CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHH-HHH
Confidence 3588999999999999999999999999999999998 9999999999999999999888888888 589
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC
Q 011103 472 EIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 472 ~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
++|++||+.||++||+|||+|+
T Consensus 427 ~~~a~ALe~ip~~La~NaG~d~ 448 (517)
T cd03336 427 EAFAKALRQLPTIIADNAGYDS 448 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999985
No 30
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-78 Score=643.03 Aligned_cols=433 Identities=40% Similarity=0.618 Sum_probs=354.7
Q ss_pred ccceeccCCcHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHh
Q 011103 30 MVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGA 109 (493)
Q Consensus 30 ~~~~i~~g~~~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~ 109 (493)
+.+...|| +++|..|+.|+..++++|++||||+||||||+++.|+|+|||||+||+++|+++||. |+|++++|.
T Consensus 2 ~~~~~~~~--~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~----akll~eva~ 75 (524)
T COG0459 2 MGKERKFG--EDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPG----AKLLVEVAK 75 (524)
T ss_pred Cccccccc--HHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCch----hHHHHHHHH
Confidence 35778899 899999999999999999999999999999999977999999999999999999998 999999999
Q ss_pred hcccccCCCcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccChH--HHHHHHHHh-----cC
Q 011103 110 RTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH--ELADVAAVS-----AG 182 (493)
Q Consensus 110 ~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~--~L~~va~ts-----~~ 182 (493)
+||+++||||||+||||++||+++.+++++|+||+.|++||++|.+.++++|++.++++++. +. +++.++ .+
T Consensus 76 ~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~-~~~~t~v~sk~~~ 154 (524)
T COG0459 76 KQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEEL-KIAITSVASKSAN 154 (524)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhh-hhhhheeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999864 22 444444 44
Q ss_pred CchhHhHHHHHHHHhhcc-----CCceEe-ecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccC
Q 011103 183 NDYTVGKMISDALQQVGR-----NGVVTI-EKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI 256 (493)
Q Consensus 183 ~~~~l~~li~~Ai~~v~~-----~g~I~v-~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i 256 (493)
+++.|++++++|+.+++. ++++.+ +.|++..|+ ++++||+|+++|.+|||.++ +.++||+|+++|++|
T Consensus 155 ~~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~-~vveG~~~dkg~~s~~~~~~-----~~~e~~~Ili~d~~l 228 (524)
T COG0459 155 SDEEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETEL-EVVEGMVFDKGYLSPYFMPD-----KRLENPKILLLDKKL 228 (524)
T ss_pred ChHHHHHHHHHHHHHhcccccccCCeEEEEecCCCccce-EEEeeEEecCCccCCCCCCc-----cccccceEEEEcccc
Confidence 568999999999999999 776554 566677777 99999999999999997543 678999999999998
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCeeeecccCc
Q 011103 257 KNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGL 336 (493)
Q Consensus 257 ~~~~el~~~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~~~~ 336 (493)
+..++.++ ++.....+.++++++++..++++..++.|.+++..+++||+.|+|+|.++..|+|++++|+.++.+++++
T Consensus 229 ~~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~- 306 (524)
T COG0459 229 EIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLG- 306 (524)
T ss_pred ccccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhH-
Confidence 77766665 5555555566666666666666666666666666666666666666666666666666666666665432
Q ss_pred cccCCCCCcccceeEEEEecCeEEEEecCCChhhHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhhhcCCeEEEEeccCCh
Q 011103 337 TLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEIT-EERFQKNILNERIARLSGGIAILQVGAQTV 415 (493)
Q Consensus 337 ~~~~~~~~~lG~~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~-~~~~~~~~l~~rl~~l~~~~~tI~l~G~t~ 415 (493)
. ....+|.|..+.+.++.+....|.+. ..+.+++ .++|+++++++|.+. .++++||+|||+|+
T Consensus 307 --~--~l~~~~ga~~v~~~~d~t~~~~G~~~-----------~~~ve~~~~~~~~~~~~~~~~~~-~~~~~tI~vrgate 370 (524)
T COG0459 307 --E--RLAKLGGAKIVSVLKDLTTIVLGEGA-----------AGLVEETKTGDYDMEKLQERKAK-AGGVATILVRGATE 370 (524)
T ss_pred --H--HHHHccCceEEeecccCceeecCccc-----------cceEEEeeccchhhhhhhhhhhc-CCCeEEEEECCccH
Confidence 0 23445555555555555444443210 1122232 567788888888888 89999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 416 VELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 416 ~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
.+++|++|+++|||+++++++++| +|||||++|++++.+|+++..+.++.+|++|+++|++||+.||++||+|||+++
T Consensus 371 ~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~ 449 (524)
T COG0459 371 VELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDP 449 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999 999999999999999999843444434446999999999999999999999975
No 31
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.8e-77 Score=639.54 Aligned_cols=389 Identities=22% Similarity=0.323 Sum_probs=348.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCCc
Q 011103 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (493)
Q Consensus 40 ~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~GDGT 119 (493)
++++..|+.+|..++++|++||||+||||||+++.|+++|||||+||+++|+++||+ |+|++++|++||+++||||
T Consensus 17 ~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~----akll~e~a~sqd~~~GDGT 92 (531)
T TIGR02346 17 EEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPA----AKLLVMASEMQENEIGDGT 92 (531)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHH----HHHHHHHHHHHhhhhCCCh
Confidence 469999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCc-ccCh---H-HHHHHHHHhcCC-----chhHhH
Q 011103 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSR-EVED---H-ELADVAAVSAGN-----DYTVGK 189 (493)
Q Consensus 120 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~-~v~~---~-~L~~va~ts~~~-----~~~l~~ 189 (493)
||+|+|+++||+++.+++++|+||..|++||+.|.+.+++.|+++++ ++++ . .|.+++++++++ ++.|++
T Consensus 93 Tt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~ 172 (531)
T TIGR02346 93 NLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQ 172 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999986 7643 3 788999888753 899999
Q ss_pred HHHHHHHhhccCC--c-------eEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEeccc-----
Q 011103 190 MISDALQQVGRNG--V-------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK----- 255 (493)
Q Consensus 190 li~~Ai~~v~~~g--~-------I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~----- 255 (493)
++++|+.++++++ . |.+..|++++|+ ++++|++|++++. .+++.++||||++++++
T Consensus 173 l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds-~li~Gi~~~~~~~---------~~~k~i~n~kI~l~~~~l~~~~ 242 (531)
T TIGR02346 173 LVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNS-EVLKGMVFNREAE---------GSVKRVKNAKVAVFSCPLDTAT 242 (531)
T ss_pred HHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhc-eeEeeeEEeccCC---------CCceeccCCCEEEEecCcCCCc
Confidence 9999999998754 2 334589999998 9999999999842 13557899999999875
Q ss_pred --------CCCHHH-----------HHHHHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccc
Q 011103 256 --------IKNPKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSH 316 (493)
Q Consensus 256 --------i~~~~e-----------l~~~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~ 316 (493)
++++++ +.++++.+.+.|+||||++++|++.++++|..+ +|+||++|++ .
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~------~I~av~~~~~-----~ 311 (531)
T TIGR02346 243 TETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKY------NIMVLKIPSK-----F 311 (531)
T ss_pred ccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHC------CcEEEecCCH-----H
Confidence 334433 456788999999999999999999999988644 5899998765 4
Q ss_pred hHHHHHHHhCCeeeecccCccccCCCCCcccceeEEEEe---cCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHH
Q 011103 317 YLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNI 393 (493)
Q Consensus 317 ~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~---~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~ 393 (493)
+|+|||.+|||++++ +++++++++||+|++|++. ++++.+|.+|..
T Consensus 312 ~l~~Ia~~tGa~ii~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~-------------------------- 360 (531)
T TIGR02346 312 ELRRLCKTVGATPLA-----RLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENG-------------------------- 360 (531)
T ss_pred HHHHHHHHHCCEEec-----ccccCCHhHccccceEEEEEECCEEEEEEEccCC--------------------------
Confidence 889999999999998 5888888999999999874 568888887532
Q ss_pred HHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHHHHHH
Q 011103 394 LNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAE 472 (493)
Q Consensus 394 l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~ 472 (493)
+++++||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|+++++..++.+| ++++
T Consensus 361 --------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~-~~~~ 431 (531)
T TIGR02346 361 --------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQ-YAIK 431 (531)
T ss_pred --------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHH-HHHH
Confidence 25689999999999999999999999999999999999 9999999999999999999877778777 5899
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 011103 473 IFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 473 ~~a~AL~~i~~~L~~NaG~~~ 493 (493)
+|++||+.||++||+|||+|+
T Consensus 432 ~~a~aL~~ip~~L~~NaG~d~ 452 (531)
T TIGR02346 432 KFAEAFEIIPRTLAENAGLNP 452 (531)
T ss_pred HHHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999985
No 32
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.2e-75 Score=624.19 Aligned_cols=389 Identities=23% Similarity=0.343 Sum_probs=347.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCC--CCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCC
Q 011103 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKY--GPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGD 117 (493)
Q Consensus 40 ~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~--g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~GD 117 (493)
++++..|+.|+..++++|+|||||+||+|||+++. |+++|||||+||+++|+++||. |+|++++|++||+++||
T Consensus 13 ~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~----akll~~~a~~qd~~~GD 88 (519)
T TIGR02341 13 ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPA----AKVLVDMSKVQDDEVGD 88 (519)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChH----HHHHHHHHHHhHhhhCC
Confidence 78999999999999999999999999999999985 9999999999999999999997 99999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCh-----H-HHHHHHHHhcCC------ch
Q 011103 118 GCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED-----H-ELADVAAVSAGN------DY 185 (493)
Q Consensus 118 GTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~-----~-~L~~va~ts~~~------~~ 185 (493)
||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++++++ . .|.++|+|++++ .+
T Consensus 89 GTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~ 168 (519)
T TIGR02341 89 GTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKD 168 (519)
T ss_pred chhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999998853 2 789999998875 37
Q ss_pred hHhHHHHHHHHhhccC---Cce--EeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCCC--
Q 011103 186 TVGKMISDALQQVGRN---GVV--TIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKN-- 258 (493)
Q Consensus 186 ~l~~li~~Ai~~v~~~---g~I--~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~-- 258 (493)
.|++++++|+..+... ..| .+.+|++++|+ ++++|+++++.+.+ +++++++||+|+++|++++.
T Consensus 169 ~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s-~l~~G~v~~~~~~~--------~~~~~~~n~~Ili~~~~Le~~~ 239 (519)
T TIGR02341 169 HFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDS-YLDEGFLLEKKIGV--------NQPKRIENAKILIANTPMDTDK 239 (519)
T ss_pred HHHHHHHHHHHHhccCCChhheEEEEccCCCcccc-eEEeeEEEeccCCC--------CCceeeccccEEEEecCCCCCc
Confidence 8999999999988432 123 34589999999 89999999988543 24668999999999987642
Q ss_pred ------------HHHHH-----------HHHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCccccccc
Q 011103 259 ------------PKDMF-----------KILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKS 315 (493)
Q Consensus 259 ------------~~el~-----------~~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~ 315 (493)
++++. ++++.+.+.|++++++++.|++.++++|..+ +|+||+.|+ +
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~------~I~~v~~~~-----~ 308 (519)
T TIGR02341 240 VKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADA------GVMAIEHAD-----F 308 (519)
T ss_pred cccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHC------CcEEEecCC-----H
Confidence 33332 2367888999999999999999999998665 589998765 5
Q ss_pred chHHHHHHHhCCeeeecccCccccCCCCCcccceeEEEE---ecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHH
Q 011103 316 HYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI---TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKN 392 (493)
Q Consensus 316 ~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i---~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~ 392 (493)
.+|+|||++|||++++ +++++++++||+|+.|+. +++++++|.+|..
T Consensus 309 ~~l~~ia~~tGa~ii~-----~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~------------------------- 358 (519)
T TIGR02341 309 EGIERLALVTGGEIVS-----TFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKL------------------------- 358 (519)
T ss_pred HHHHHHHHHhCCEEec-----ccccCCccccccCceEEEEEECCEEEEEEEcCCC-------------------------
Confidence 5999999999999999 588888899999999975 4678999998854
Q ss_pred HHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHHHHH
Q 011103 393 ILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGA 471 (493)
Q Consensus 393 ~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~ 471 (493)
++++||+|||+|+.+++|.+|+++||+++++++++++ +|||||++|++++.+|+++++..++++| +++
T Consensus 359 ----------~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~-~~i 427 (519)
T TIGR02341 359 ----------GEACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEA-LAV 427 (519)
T ss_pred ----------CCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHH-HHH
Confidence 3588999999999999999999999999999999996 9999999999999999998877788887 589
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC
Q 011103 472 EIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 472 ~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
++|++||++||++||+|||+|+
T Consensus 428 ~~~a~Ale~ip~~La~NaG~d~ 449 (519)
T TIGR02341 428 EAFARALRQLPTIIADNAGFDS 449 (519)
T ss_pred HHHHHHHHHHHHHHHHHCCCCH
Confidence 9999999999999999999985
No 33
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.4e-75 Score=618.22 Aligned_cols=378 Identities=21% Similarity=0.298 Sum_probs=340.9
Q ss_pred cCCcHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhccccc
Q 011103 36 FNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLA 115 (493)
Q Consensus 36 ~g~~~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~ 115 (493)
++. ++++..|+.+|..++++|++||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++||+++
T Consensus 4 ~~~-~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~~~~~~ 78 (472)
T cd03341 4 SGL-EEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPA----AKLLVMASQMQEEEI 78 (472)
T ss_pred chH-HHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHH----HHHHHHHHHHHhhhh
Confidence 344 789999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcc-cCh---H-HHHHHHHHhcC-----Cch
Q 011103 116 GDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSRE-VED---H-ELADVAAVSAG-----NDY 185 (493)
Q Consensus 116 GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~-v~~---~-~L~~va~ts~~-----~~~ 185 (493)
||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|++++.+ +++ . .+.++++|+++ +++
T Consensus 79 GDGTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~ 158 (472)
T cd03341 79 GDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNED 158 (472)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchHH
Confidence 9999999999999999999999999999999999999999999999999865 533 2 67888888864 467
Q ss_pred hHhHHHHHHHHhhccC--Cc-------eEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccC
Q 011103 186 TVGKMISDALQQVGRN--GV-------VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI 256 (493)
Q Consensus 186 ~l~~li~~Ai~~v~~~--g~-------I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i 256 (493)
.|++++++|+.+++++ |. |.+.+|++++|| ++++|++|++.+. .++++++||+|+++++++
T Consensus 159 ~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds-~lv~Giv~~~~~~---------~~~~~~~n~~Ili~~~~L 228 (472)
T cd03341 159 FLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDS-KVVRGMVFKREPE---------GSVKRVKKAKVAVFSCPF 228 (472)
T ss_pred HHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccc-eEEeeEEEccccC---------CCceeccCCcEEEEeccc
Confidence 9999999999999875 42 345689999999 9999999986532 234789999999999998
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCeeeecccCc
Q 011103 257 KNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGL 336 (493)
Q Consensus 257 ~~~~el~~~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~~~~ 336 (493)
+. |+||||++++|+++++++|..+ +|+||++|+ +++|+|||++|||++++
T Consensus 229 e~--------------g~~lvi~~~~I~d~al~~l~~~------~I~av~~~~-----~~~Le~Ia~~tGa~ii~----- 278 (472)
T cd03341 229 DI--------------GVNVIVAGGSVGDLALHYCNKY------GIMVIKINS-----KFELRRLCRTVGATPLP----- 278 (472)
T ss_pred cC--------------CCeEEEECCCCCHHHHHHHHHC------CeEEEEeCC-----HHHHHHHHHHhCCEEec-----
Confidence 76 8999999999999999997543 689999764 67899999999999999
Q ss_pred cccCCCCCcccceeEEEEec---CeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccC
Q 011103 337 TLDKAGKEVLGTAIKVVITK---DSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQ 413 (493)
Q Consensus 337 ~~~~~~~~~lG~~~~v~i~~---~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~~rl~~l~~~~~tI~l~G~ 413 (493)
++++++++++|+|++|++.+ ++|++|.+|++ .++++||+|||+
T Consensus 279 ~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~----------------------------------~~~~~TI~lrG~ 324 (472)
T cd03341 279 RLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKE----------------------------------DSKIATIVLRGA 324 (472)
T ss_pred ccccCCHhHCCCceEEEEEEECCeeEEEEEccCC----------------------------------CCCeEEEEEECC
Confidence 47888889999999999864 88999998753 145889999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 011103 414 TVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGPI 492 (493)
Q Consensus 414 t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~~a~AL~~i~~~L~~NaG~~ 492 (493)
|+.+++|+||+++||++++++++++| +|||||++|++++.+|++++...++.+| +++++|++||++||++|++|||+|
T Consensus 325 t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~-~~~~~~a~al~~ip~~L~~NaG~d 403 (472)
T cd03341 325 TQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQ-YAIKKFAEAFEVVPRTLAENAGLD 403 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHH-HHHHHHHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999 9999999999999999998877778777 589999999999999999999998
Q ss_pred C
Q 011103 493 Q 493 (493)
Q Consensus 493 ~ 493 (493)
+
T Consensus 404 ~ 404 (472)
T cd03341 404 A 404 (472)
T ss_pred H
Confidence 5
No 34
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=8.1e-75 Score=617.30 Aligned_cols=377 Identities=37% Similarity=0.553 Sum_probs=346.0
Q ss_pred eccCCcHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhccc
Q 011103 34 VYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTND 113 (493)
Q Consensus 34 i~~g~~~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~ 113 (493)
..+| ++++..|++||..+++++++||||+|++|||+++.|+++|||||+||+++|+++||. ++|+++++++||+
T Consensus 3 ~~~~--~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~----a~ll~~~~~~~~~ 76 (464)
T cd00309 3 REFG--EEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPA----AKLLVEVAKSQDD 76 (464)
T ss_pred cccH--HHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHH----HHHHHHHHHHHHh
Confidence 4566 899999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcc--cChH-HHHHHHHHhcC------Cc
Q 011103 114 LAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSRE--VEDH-ELADVAAVSAG------ND 184 (493)
Q Consensus 114 ~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~--v~~~-~L~~va~ts~~------~~ 184 (493)
++||||||+++|+++|++++.+++++|+||..|++||+.|.+.++++|++++++ +.+. .|.++++|+++ ++
T Consensus 77 ~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~ 156 (464)
T cd00309 77 EVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGD 156 (464)
T ss_pred HhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccch
Confidence 999999999999999999999999999999999999999999999999999998 4444 89999999998 68
Q ss_pred hhHhHHHHHHHHhhcc------CCceE--eecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccC
Q 011103 185 YTVGKMISDALQQVGR------NGVVT--IEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI 256 (493)
Q Consensus 185 ~~l~~li~~Ai~~v~~------~g~I~--v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i 256 (493)
+.|++++++|+.++++ .+.|. +.+|+++.|| ++++|++|+++|.+|+| +.+++||+|+++++++
T Consensus 157 ~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds-~li~Gi~~~~~~~~~~m-------~~~~~n~~Ili~~~~L 228 (464)
T cd00309 157 DFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDS-ELVVGMVFDKGYLSPYM-------PKRLENAKILLLDCKL 228 (464)
T ss_pred HHHHHHHHHHHHHhccccCccccceEEEEecCCCCcccc-eeeeeEEEecCCCCCCC-------ceeecCceEEEEecCc
Confidence 9999999999999988 45544 4589999999 89999999999999875 5689999999999998
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCeeeecccCc
Q 011103 257 KNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGL 336 (493)
Q Consensus 257 ~~~~el~~~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~~~~ 336 (493)
+. +|++.++|+++++++|..+ +|+||+ ++++++|+|||++||+++++
T Consensus 229 e~-----------------lIi~~~~I~~~al~~L~~~------~I~~v~-----~~~~~~L~~Ia~~tGa~ii~----- 275 (464)
T cd00309 229 EY-----------------VVIAEKGIDDEALHYLAKL------GIMAVR-----RVRKEDLERIAKATGATIVS----- 275 (464)
T ss_pred ce-----------------EEecCCCcCHHHHHHHHHC------CeEEEE-----eCCHHHHHHHHHHhCCEEec-----
Confidence 76 7888888999999999775 578887 46789999999999999999
Q ss_pred cccCCCCCcccceeEEEEe---cCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccC
Q 011103 337 TLDKAGKEVLGTAIKVVIT---KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQ 413 (493)
Q Consensus 337 ~~~~~~~~~lG~~~~v~i~---~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~~rl~~l~~~~~tI~l~G~ 413 (493)
++++++++.+|+|+.+++. ++++++|.+|.. +.++||+|||+
T Consensus 276 ~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~-----------------------------------~~~~TIllrG~ 320 (464)
T cd00309 276 RLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKG-----------------------------------GKVATILLRGA 320 (464)
T ss_pred ccccCCcccCccccEEEEEEEcCeeEEEEEecCC-----------------------------------CCEEEEEEeCC
Confidence 4788888999999999974 567888887643 35889999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 011103 414 TVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGPI 492 (493)
Q Consensus 414 t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~~a~AL~~i~~~L~~NaG~~ 492 (493)
|+.+++|++|+++||+++++++++++ +|||||++|++++++|++++...++.+| +++++|++||+.||++|++|||+|
T Consensus 321 t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~-~~~~~~a~aL~~ip~~L~~NaG~d 399 (464)
T cd00309 321 TEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQ-LGIEAFADALEVIPRTLAENAGLD 399 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999995 9999999999999999999877777777 589999999999999999999998
Q ss_pred C
Q 011103 493 Q 493 (493)
Q Consensus 493 ~ 493 (493)
+
T Consensus 400 ~ 400 (464)
T cd00309 400 P 400 (464)
T ss_pred H
Confidence 5
No 35
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-70 Score=531.46 Aligned_cols=396 Identities=22% Similarity=0.318 Sum_probs=348.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCCc
Q 011103 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (493)
Q Consensus 40 ~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~GDGT 119 (493)
++.|.+|+++.+.++++++|||||+||||||+.+.|+++|||||+|||+.|++-||+ |+||++++..||.++||||
T Consensus 25 ~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~----akmLvelS~aQD~eaGDGT 100 (534)
T KOG0358|consen 25 EQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPA----AKMLVELSAAQDSEAGDGT 100 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChH----HHHHHHhhhhccccccCCc
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccC--hH-HHHHHHHHhcCC------chhHhHH
Q 011103 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVE--DH-ELADVAAVSAGN------DYTVGKM 190 (493)
Q Consensus 120 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~-~L~~va~ts~~~------~~~l~~l 190 (493)
||||+||+.||+.+.+|+++|+||+.|.+.|+.|.+..+++|++++.|++ +. .|.+-|+||+|+ ...++.+
T Consensus 101 TsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapm 180 (534)
T KOG0358|consen 101 TSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPM 180 (534)
T ss_pred eEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchH
Confidence 99999999999999999999999999999999999999999999998876 44 688899999875 4788999
Q ss_pred HHHHHHhhcc-CC-------ce--EeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEeccc-----
Q 011103 191 ISDALQQVGR-NG-------VV--TIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK----- 255 (493)
Q Consensus 191 i~~Ai~~v~~-~g-------~I--~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~----- 255 (493)
.++|+.++-. +. .| -++.||.++|+ ++++|++|++..... ..+..+++++|-++.+.
T Consensus 181 AVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDt-e~i~glvl~~~~~~~-------~gptriekAkIglIQF~iS~PK 252 (534)
T KOG0358|consen 181 AVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDT-ELIKGLVLTQKASKS-------AGPTRIEKAKIGLIQFQISPPK 252 (534)
T ss_pred HHHHHHhccCcccccccchhhhhhHHhhCCccchh-hhhcceEEeeecccC-------CCcchhhhceeeEEEEEecCCC
Confidence 9999999854 21 13 34699999999 999999999764432 14557889999887763
Q ss_pred --------CCCHHH-----------HHHHHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccc
Q 011103 256 --------IKNPKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSH 316 (493)
Q Consensus 256 --------i~~~~e-----------l~~~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~ 316 (493)
+++..+ ++++++++++.|.|+++++++|=.++++-|..+-+ ..++|++|| ++.++
T Consensus 253 tdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL-~klkimvik-----dieRe 326 (534)
T KOG0358|consen 253 TDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFL-AKLKIMVIK-----DIERE 326 (534)
T ss_pred CCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHH-HhCcEEEEc-----cccHh
Confidence 333332 56678899999999999999886666665554443 245899998 78899
Q ss_pred hHHHHHHHhCCeeeecccCccccCCCCCcccceeEEEEe----cCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHH
Q 011103 317 YLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT----KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKN 392 (493)
Q Consensus 317 ~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~----~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~ 392 (493)
++|.+|+.+|++++. +++.++++.||+++-++.. +.+++-+.|+.++
T Consensus 327 diefick~l~c~Pia-----~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~------------------------ 377 (534)
T KOG0358|consen 327 DIEFICKTLGCKPIA-----DIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNA------------------------ 377 (534)
T ss_pred hHHHHHhhcCCeecc-----hhhhcChhhcCcchhhhhcccCCCccEEEEEEeecC------------------------
Confidence 999999999999999 5899999999999999863 4477777776442
Q ss_pred HHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHHHHH
Q 011103 393 ILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGA 471 (493)
Q Consensus 393 ~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~ 471 (493)
|..++|++||++...++|.+|++|||||++|+.++.. ++||||+.|++++..|.+++.+..+.+++ ..
T Consensus 378 ----------g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~y-c~ 446 (534)
T KOG0358|consen 378 ----------GRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEAY-CW 446 (534)
T ss_pred ----------CCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchhH-HH
Confidence 4567899999999999999999999999999999987 99999999999999999999999998886 69
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC
Q 011103 472 EIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 472 ~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
+.|++|||.||.+||+|||++|
T Consensus 447 rafA~AlEvIP~tLAeNAGLnp 468 (534)
T KOG0358|consen 447 RAFADALEVIPYTLAENAGLNP 468 (534)
T ss_pred HHHHHHHhcccHhHHhhCCCCh
Confidence 9999999999999999999997
No 36
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1.6e-68 Score=572.38 Aligned_cols=377 Identities=30% Similarity=0.489 Sum_probs=339.0
Q ss_pred HHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCCcchHHHHHHHHHHH
Q 011103 53 VAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAE 132 (493)
Q Consensus 53 la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~GDGTTt~vvLa~~Ll~~ 132 (493)
|+++|++||||+|++|||+++.|+++|||||+||+++++++||+ ++|+++++++||+++||||||+|+|+++|+++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~----~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~ 76 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPI----AKLLVEASKSQDEEVGDGTTSVVLLACELLRN 76 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHH----HHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccch----hhhHHHhHHHHHhhhccccceeeecccchhhh
Confidence 68999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccChH--HHHHHHHHhcCCc------hhHhHHHHHHHHhhccC---
Q 011103 133 GVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH--ELADVAAVSAGND------YTVGKMISDALQQVGRN--- 201 (493)
Q Consensus 133 ~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~--~L~~va~ts~~~~------~~l~~li~~Ai~~v~~~--- 201 (493)
+.+++++|+||..|++||+.|.+.+++.|++++++++.. .++++++|+++++ +.|++++++|++.+..+
T Consensus 77 ~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~ 156 (485)
T PF00118_consen 77 ALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDL 156 (485)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHG
T ss_pred hhhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccc
Confidence 999999999999999999999999999999999988753 8999999999987 89999999999444321
Q ss_pred C--ceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCCCHHH------------------
Q 011103 202 G--VVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKD------------------ 261 (493)
Q Consensus 202 g--~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~e------------------ 261 (493)
+ .+....|++++|| ++++|++|+++|.+| +|+++++||+|++++++++...+
T Consensus 157 ~~i~i~~i~g~~~~dS-~li~Giv~~~~~~~~-------~~~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 228 (485)
T PF00118_consen 157 DNIKIIKIPGGSISDS-ELINGIVLDKGFSSP-------NMPKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSK 228 (485)
T ss_dssp GGEEEEEEESSSSGGE-EEESEEEESSSBSST-------TSBSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHH
T ss_pred cchhhhhhcccccccc-ccccceeeecccccc-------ccccccccceEEeeecccccccccccccchhhHHHHHHHHh
Confidence 1 1344688999999 899999999999876 46678899999999998766555
Q ss_pred -----HHHHHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCeeeecccCc
Q 011103 262 -----MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGL 336 (493)
Q Consensus 262 -----l~~~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~~~~ 336 (493)
+.++++++.+.|+++||++++|++.++++|..++ |.+++ ++++++|++|+++||+++++
T Consensus 229 ~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~------I~~i~-----~v~~~~l~~i~~~tg~~ii~----- 292 (485)
T PF00118_consen 229 QEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNG------ILVIR-----RVSKEDLERIARATGASIIS----- 292 (485)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCT------HEEES-----SEHHHHHHHHHHHHTSBEBS-----
T ss_pred hhhhhhccccceEeeeccceeeeecccccccchhhhhhh------hhccc-----cchHHHHHhhhcccCCcEec-----
Confidence 7888999999999999999999999999998775 45554 66889999999999999999
Q ss_pred cccCCCCCcccceeEE---EEecCeEEEEec--CCChhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEec
Q 011103 337 TLDKAGKEVLGTAIKV---VITKDSTLIVTD--GSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVG 411 (493)
Q Consensus 337 ~~~~~~~~~lG~~~~v---~i~~~~~~~~~g--~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~~rl~~l~~~~~tI~l~ 411 (493)
++++++++.+|+|+.+ ++++++|+++++ |. ++..+||+||
T Consensus 293 ~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~-----------------------------------~~~~~Till~ 337 (485)
T PF00118_consen 293 SLDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCL-----------------------------------SSKICTILLR 337 (485)
T ss_dssp SCGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSES-----------------------------------SSSEEEEEEE
T ss_pred ccccccchhhhhhhhhhhccccccccccccccccc-----------------------------------ccCceEEEec
Confidence 4788888889999999 567889999984 32 4568999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011103 412 AQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAG 490 (493)
Q Consensus 412 G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~~a~AL~~i~~~L~~NaG 490 (493)
|+|+.+++|++++++||+++++++++++ +|||||++|++|+++|++++...++.+| +++++|++||+.||++|++|||
T Consensus 338 g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~-~~~~~~a~aL~~ip~~L~~NaG 416 (485)
T PF00118_consen 338 GPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQ-LAIEAFADALESIPKTLAQNAG 416 (485)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHH-HHHHHHHHHTTHHHHHHHHHTT
T ss_pred cccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchh-hhHHHHHHHHHHhhhhhhhccC
Confidence 9999999999999999999999999987 9999999999999999999888777776 5899999999999999999999
Q ss_pred CCC
Q 011103 491 PIQ 493 (493)
Q Consensus 491 ~~~ 493 (493)
+++
T Consensus 417 ~~~ 419 (485)
T PF00118_consen 417 LDS 419 (485)
T ss_dssp STH
T ss_pred CCc
Confidence 974
No 37
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-65 Score=497.03 Aligned_cols=388 Identities=24% Similarity=0.363 Sum_probs=340.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCceEeecC--CCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCC
Q 011103 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNK--YGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGD 117 (493)
Q Consensus 40 ~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~--~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~GD 117 (493)
+.||...+.|...+.++|+|||||+||+||+... .|.+.+||||+|||+++.+.+|+ ||+|++.++-||+|+||
T Consensus 17 e~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpa----AkvLv~~S~vQD~EvGD 92 (527)
T KOG0363|consen 17 ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPA----AKVLVDISKVQDDEVGD 92 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCch----hhheeccccccccccCC
Confidence 8899999999999999999999999999999853 56799999999999999999999 99999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccCh---H---HHHHHHHHhcCC------ch
Q 011103 118 GCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVED---H---ELADVAAVSAGN------DY 185 (493)
Q Consensus 118 GTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~---~---~L~~va~ts~~~------~~ 185 (493)
|||||++||++||+++.+|+.+.+||..|+.||+.|...+++.|.+.++.... + +|.++|+|++.+ ++
T Consensus 93 GTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~ke 172 (527)
T KOG0363|consen 93 GTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKE 172 (527)
T ss_pred CceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999988876542 1 899999998764 69
Q ss_pred hHhHHHHHHHHhhccCC-----ceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEeccc-----
Q 011103 186 TVGKMISDALQQVGRNG-----VVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK----- 255 (493)
Q Consensus 186 ~l~~li~~Ai~~v~~~g-----~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~----- 255 (493)
+|+++.++|+.++.-.+ .|.++.||+++|| .+-+|+.+++.+-. +.|+.++||+||+-+.+
T Consensus 173 hFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dS-fLDeGFlL~K~igv--------~qpkriena~iLIANT~mDtDK 243 (527)
T KOG0363|consen 173 HFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDS-FLDEGFLLDKKIGV--------NQPKRIENAKILIANTPMDTDK 243 (527)
T ss_pred HHHHHHHHHHHHhcCCCCccceeeehhcCCccccc-cccccceeccccCC--------CCcccccccceEEecCCCcccc
Confidence 99999999999986533 2556799999999 79999999886431 34568999999997653
Q ss_pred ---------CCCHH---H--------HHHHHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCccccccc
Q 011103 256 ---------IKNPK---D--------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKS 315 (493)
Q Consensus 256 ---------i~~~~---e--------l~~~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~ 315 (493)
+++.. | +...++++.+.|+|++|-..-|-++-.++|... .|++|....|.
T Consensus 244 vKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~da------gi~aIEHADFd---- 313 (527)
T KOG0363|consen 244 VKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADA------GIMAIEHADFD---- 313 (527)
T ss_pred eeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhc------Ccceeecccch----
Confidence 33332 2 344688899999999987766666666666443 57899877664
Q ss_pred chHHHHHHHhCCeeeecccCccccCCCCCcccceeEEE---EecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHH
Q 011103 316 HYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVV---ITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKN 392 (493)
Q Consensus 316 ~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~---i~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~ 392 (493)
-+||++.+|||.+.+ ++++++...+|+|+.++ +++++++-|.||.
T Consensus 314 -GiERLalvtGGeI~S-----TFd~p~~~klG~C~~IeeimiGed~li~FSGv~-------------------------- 361 (527)
T KOG0363|consen 314 -GIERLALVTGGEIVS-----TFDNPELVKLGECDLIEEIMIGEDKLIKFSGVK-------------------------- 361 (527)
T ss_pred -hHHHHhhcccceeee-----ccCCcchhccccchhhHHHhcCccceeeecccc--------------------------
Confidence 679999999999999 69999999999999997 5899999999974
Q ss_pred HHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHHHHH
Q 011103 393 ILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGA 471 (493)
Q Consensus 393 ~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~ 471 (493)
.|..|||++||+|++.+||.+|++|||||++....++. +|.||||.||-.++.+.+++...++++- .++
T Consensus 362 ---------~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea-~Ai 431 (527)
T KOG0363|consen 362 ---------LGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEA-LAI 431 (527)
T ss_pred ---------cccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhh-HHH
Confidence 24578999999999999999999999999999999997 9999999999999999999999999887 589
Q ss_pred HHHHHHHHHHHHHHHHhcCCC
Q 011103 472 EIFKRALSYPTKLIAKNAGPI 492 (493)
Q Consensus 472 ~~~a~AL~~i~~~L~~NaG~~ 492 (493)
++|++||..+|.+||.|||++
T Consensus 432 eAfarAL~qlPtiiaDNaG~d 452 (527)
T KOG0363|consen 432 EAFARALRQLPTIIADNAGYD 452 (527)
T ss_pred HHHHHHHHhcchhhhccCCCC
Confidence 999999999999999999997
No 38
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-63 Score=499.70 Aligned_cols=388 Identities=24% Similarity=0.327 Sum_probs=342.7
Q ss_pred cHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCC
Q 011103 39 DGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDG 118 (493)
Q Consensus 39 ~~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~GDG 118 (493)
++++...++++|++++++++|+|||+||||||+|+.|++.+|||.+||+|+++++||+ ||||+++++.|+++.|||
T Consensus 24 ~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPa----akllv~a~~~q~~~iGDg 99 (537)
T KOG0362|consen 24 EEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPA----AKLLVEATQMQEEEIGDG 99 (537)
T ss_pred chHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcH----HHHHHHHHHHHHHhhCCC
Confidence 4889999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCc----ccChHHHHHHHHHh-----cCCchhHhH
Q 011103 119 CTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSR----EVEDHELADVAAVS-----AGNDYTVGK 189 (493)
Q Consensus 119 TTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~----~v~~~~L~~va~ts-----~~~~~~l~~ 189 (493)
|+++|+|+++||++|.++|.-|++|.+|++||+.|.+++++.|.++.. ++++++ .+++++ ..+++++++
T Consensus 100 tnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~--~~~rs~i~skq~~~ed~l~~ 177 (537)
T KOG0362|consen 100 TNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKE--WALRSVIMSKQYGNEDFLTK 177 (537)
T ss_pred ceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChH--HHHHHHHHHhhcchHHHHHH
Confidence 999999999999999999999999999999999999999999988743 233332 333333 335799999
Q ss_pred HHHHHHHhhccCC-------ceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEeccc-------
Q 011103 190 MISDALQQVGRNG-------VVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK------- 255 (493)
Q Consensus 190 li~~Ai~~v~~~g-------~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~------- 255 (493)
++++|+..+.+.+ .+.++.|+++++| .++.||+|++... +...+-+.++|.++.|+
T Consensus 178 lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S-~Vv~GmVfkr~~e---------G~v~~ak~arvAvf~cP~d~~~TE 247 (537)
T KOG0362|consen 178 LVAKACVSILPLMSFNVDNIRVCKILGGGLEDS-CVVCGMVFKRDPE---------GEVKSAKDARVAVFACPFDIAQTE 247 (537)
T ss_pred HHHHHHHhhcccccccccceEEEEEecCCcccc-eeeEEEEeccccC---------CcccccccceeEEEecCCCccccc
Confidence 9999999998863 2566899999999 8999999998743 33356678899999887
Q ss_pred ------CCCHHHHHHH-----------HHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchH
Q 011103 256 ------IKNPKDMFKI-----------LDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYL 318 (493)
Q Consensus 256 ------i~~~~el~~~-----------le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l 318 (493)
|++++|+++| ++.+...|+++|++...+++.+|+++ |++ +|++++.+ ++.+|
T Consensus 248 tkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhfl--nky----~ImVlqi~-----Sk~eL 316 (537)
T KOG0362|consen 248 TKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFL--NKY----KIMVLQIN-----SKFDL 316 (537)
T ss_pred CcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhh--ccc----cEEEEEec-----cHhhH
Confidence 6778777653 56778899999999999999998876 776 69999876 47899
Q ss_pred HHHHHHhCCeeeecccCccccCCCCCcccceeEEEE---ecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHHH
Q 011103 319 DDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI---TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILN 395 (493)
Q Consensus 319 ~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i---~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~ 395 (493)
.|+|+.+||.+++ ++..+.++.+|+|++|.. +++.+++|.....
T Consensus 317 rrlcrtvGA~~l~-----rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~---------------------------- 363 (537)
T KOG0362|consen 317 RRLCRTVGATALP-----RLFPPAPEELGYCDSVSTQEIGDTLVVVFRWEST---------------------------- 363 (537)
T ss_pred HHHHHHcCCccch-----hccCCCCccccccceeeeeecCCceEEEEeeccC----------------------------
Confidence 9999999999999 588888999999999975 5667777765211
Q ss_pred HHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHHH
Q 011103 396 ERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIF 474 (493)
Q Consensus 396 ~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~~ 474 (493)
.+.++|++|||+|+..+|+.||+++|++++.+...+++ ++||+|++|++|++.|.++++++++.+|+ +++.|
T Consensus 364 ------~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~-Aik~f 436 (537)
T KOG0362|consen 364 ------GTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQL-AIKKF 436 (537)
T ss_pred ------CCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchh-HHHHH
Confidence 13488999999999999999999999999999999998 99999999999999999999999999996 89999
Q ss_pred HHHHHHHHHHHHHhcCCCC
Q 011103 475 KRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 475 a~AL~~i~~~L~~NaG~~~ 493 (493)
++||+.+|++|++|||++.
T Consensus 437 a~Ale~~PktlaEnagl~~ 455 (537)
T KOG0362|consen 437 AEALEVLPKTLAENAGLAV 455 (537)
T ss_pred HHHhccccHhHHHhcCCcH
Confidence 9999999999999999873
No 39
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-63 Score=495.18 Aligned_cols=393 Identities=23% Similarity=0.323 Sum_probs=346.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCCc
Q 011103 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (493)
Q Consensus 40 ~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~GDGT 119 (493)
+.+|..|..++..++++|+|||||-|+|||++++.|++.+||||+|||+.+.++||+ +|+|++.++.||+++||||
T Consensus 18 ~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa----~KiLvelaq~qd~evgDgt 93 (545)
T KOG0360|consen 18 ERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPA----AKVLVELAQLQDEEVGDGT 93 (545)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchH----HHHHHHHHHhccccccCCc
Confidence 778999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh-cCcccChH---HHHHHHHHhcCC------chhHhH
Q 011103 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKL-TSREVEDH---ELADVAAVSAGN------DYTVGK 189 (493)
Q Consensus 120 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~-~s~~v~~~---~L~~va~ts~~~------~~~l~~ 189 (493)
|++++++++||+.+.+|+..++||+.++.||+.|...+++++.+ .+.|++.- .|.++++|++++ .++|++
T Consensus 94 tsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~ 173 (545)
T KOG0360|consen 94 TSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTE 173 (545)
T ss_pred eEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccchHHHHH
Confidence 99999999999999999999999999999999999999999975 57777743 789999999865 489999
Q ss_pred HHHHHHHhhcc---CC---------ceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEeccc--
Q 011103 190 MISDALQQVGR---NG---------VVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKK-- 255 (493)
Q Consensus 190 li~~Ai~~v~~---~g---------~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~-- 255 (493)
++++|+..+.- +| .|-+-+|.+..|| .++.||.+.....+. .|+..++|+||+++|+.
T Consensus 174 ~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS-~l~~GyaLnc~~asq-------~m~~~i~~~Kiacld~~Lq 245 (545)
T KOG0360|consen 174 MVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIES-MLLPGYALNCSVASQ-------MMPLRIKNAKIACLDFTLQ 245 (545)
T ss_pred HHHHHHHHHhhcccCCceeccccceeEEecCCccchhh-eeecceeeeccHhhh-------ccccccccceeeeEecccc
Confidence 99999998753 23 2445699999999 799999999876643 57788999999999974
Q ss_pred -----------CCCHHHHHHH-----------HHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCccccc
Q 011103 256 -----------IKNPKDMFKI-----------LDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (493)
Q Consensus 256 -----------i~~~~el~~~-----------le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~ 313 (493)
|.+++++.++ ++++.+.|+|+|+++++|||.++.+|+..+ ++||+ +.
T Consensus 246 k~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veag------amAVr-----R~ 314 (545)
T KOG0360|consen 246 KTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAG------AMAVR-----RC 314 (545)
T ss_pred cccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcc------hhhhH-----HH
Confidence 4566554432 457889999999999999999999998874 57776 67
Q ss_pred ccchHHHHHHHhCCeeeecccCccc-cCCCCCcccceeEEE---EecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHH
Q 011103 314 KSHYLDDIAILTGGLVIRDEMGLTL-DKAGKEVLGTAIKVV---ITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERF 389 (493)
Q Consensus 314 ~~~~l~~ia~~tG~~ii~~~~~~~~-~~~~~~~lG~~~~v~---i~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~ 389 (493)
++++|++|+++||++++++..++.- +.+.+..+|+|++|. +++|.++++.+..-
T Consensus 315 ~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka---------------------- 372 (545)
T KOG0360|consen 315 KKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKA---------------------- 372 (545)
T ss_pred HHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCcc----------------------
Confidence 8999999999999999997544332 345678899999997 46888998887421
Q ss_pred HHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHH
Q 011103 390 QKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQK 468 (493)
Q Consensus 390 ~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~ 468 (493)
..+.|++||+|++.+||++|++|||||++|..++++ +|||||++|.+++-+|++|+.+..+++|.
T Consensus 373 --------------~~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~l 438 (545)
T KOG0360|consen 373 --------------TSASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSREQL 438 (545)
T ss_pred --------------ceeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccHHHH
Confidence 256799999999999999999999999999999999 99999999999999999999999899996
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Q 011103 469 IGAEIFKRALSYPTKLIAKNAGPI 492 (493)
Q Consensus 469 ~~~~~~a~AL~~i~~~L~~NaG~~ 492 (493)
++.-|+.||.++|++|+-||+.+
T Consensus 439 -aiaefa~all~ipktla~naa~D 461 (545)
T KOG0360|consen 439 -AIAEFAAALLSIPKTLAVNAAKD 461 (545)
T ss_pred -HHHHHHHHHhcchHHHhhhhccc
Confidence 57778889999999999999876
No 40
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-61 Score=473.47 Aligned_cols=406 Identities=19% Similarity=0.290 Sum_probs=361.8
Q ss_pred CCcceEEeecCCCCCC-CCCCCCccccccceeccCCcHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecC
Q 011103 4 LSTPIFAISFKNPTLP-KRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVND 82 (493)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnD 82 (493)
|..|+|+++.+++|.. +.+| ..|+++.++++|.+++++||+.|.||+.++.|.+..|||
T Consensus 1 m~apv~~~~~~~~re~g~kvq--------------------~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tnd 60 (527)
T KOG0364|consen 1 MQAPVLVLSKNTKRESGRKVQ--------------------LGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTND 60 (527)
T ss_pred CCCceeecccccCcCcccccc--------------------ccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecC
Confidence 5689999999999976 3333 346778889999999999999999999999999999999
Q ss_pred hHHHhccccccCcccchHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 011103 83 GETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELK 162 (493)
Q Consensus 83 G~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~ 162 (493)
|..|+++|++.||+ |+-+.+++.+||+++|||||||++||+|+|..+..++++|+||+.+++.|.+|++.++..++
T Consensus 61 g~ailrei~Vahpa----aksmiel~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~ 136 (527)
T KOG0364|consen 61 GNAILREIDVAHPA----AKSMIELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALD 136 (527)
T ss_pred cHHHHHHHhhcCcc----hhhHhhhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccCh--H-HHHHHHHHhcC------CchhHhHHHHHHHHhhccC-Cc---------eEeecCCCcccceeeeeceE
Q 011103 163 LTSREVED--H-ELADVAAVSAG------NDYTVGKMISDALQQVGRN-GV---------VTIEKGKCTENSLEIVEGMR 223 (493)
Q Consensus 163 ~~s~~v~~--~-~L~~va~ts~~------~~~~l~~li~~Ai~~v~~~-g~---------I~v~~G~~~~ds~~~i~G~~ 223 (493)
+++.|++. + .++++..++.. +.+.++++..+|+++++.+ |. +.+++|+.++|| ++++|+.
T Consensus 137 ~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s-~vl~Gv~ 215 (527)
T KOG0364|consen 137 KISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDS-CVLKGVM 215 (527)
T ss_pred hhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCccccccc-ceeccee
Confidence 99888874 3 67777776654 4678899999999999875 32 346799999999 8999999
Q ss_pred EecccCCCccccCcCCceeEecceeEEEecccCCC------------------------HHHHHHHHHHHHHcCCCEEEE
Q 011103 224 FDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKN------------------------PKDMFKILDSAVKEKYPIVIV 279 (493)
Q Consensus 224 ~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~------------------------~~el~~~le~i~~~g~~lvii 279 (493)
+.+...|| +|+..++||+|+++|+++.. -+++..+++.+....+++|++
T Consensus 216 ~nkdv~Hp-------kmrr~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVit 288 (527)
T KOG0364|consen 216 INKDVTHP-------KMRRAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVIT 288 (527)
T ss_pred eccccCcH-------HHHHHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEe
Confidence 99999988 36678999999999997421 123455778888999999999
Q ss_pred ecCchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCeeeecccCccccCCCCCccc-ceeEEEE---e
Q 011103 280 AEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLG-TAIKVVI---T 355 (493)
Q Consensus 280 ~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG-~~~~v~i---~ 355 (493)
.+++++.+.++|..++ +.++ +++++.|-.|++++||+++.+ +++++.+.+.| .|+-+++ +
T Consensus 289 ekG~sdla~hyl~k~~------iT~~-----rr~rKtDn~ria~acga~iv~-----rpedl~e~dvGt~agLf~~kK~g 352 (527)
T KOG0364|consen 289 EKGVSDLAQHYLLKAN------ITAI-----RRLRKTDNNRIARACGARIVN-----RPEDLPERDVGTGAGLFEVKKIG 352 (527)
T ss_pred ccchhHHHHHHHHhcC------chhh-----hhhhccccchhhhhcCceecc-----ChhhCchhccCcccceeeeeccC
Confidence 9999999999998875 4544 478999999999999999999 69999999999 4778876 5
Q ss_pred cCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHH
Q 011103 356 KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAA 435 (493)
Q Consensus 356 ~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~a 435 (493)
++.|+||..|.+|+ .|||++||+|..+++|.+|-++||+.++|+.
T Consensus 353 deyf~f~~~Ck~pk-----------------------------------aCtillrg~skdil~e~ernlqda~~varn~ 397 (527)
T KOG0364|consen 353 DEYFTFFTDCKEPK-----------------------------------ACTILLRGPSKDILNEVERNLQDAMGVARNV 397 (527)
T ss_pred chhhhhhhhcCCCc-----------------------------------ceEEEeccCchhHHHHHHHHhhhHHHHHHHh
Confidence 78999999998874 6899999999999999999999999999999
Q ss_pred HhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 436 IEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 436 l~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
+-++ ++||||++||.+|+.|.+.+...++-+|+ -+++++.||+.+|++|++|+|.++
T Consensus 398 ii~PklvPGGGAtEMAvs~~L~qksa~~~GVekw-PY~Ava~AlEviPrtliqncGan~ 455 (527)
T KOG0364|consen 398 IINPKLVPGGGATEMAVSHELRQKSALMTGVEKW-PYGAVAGALEVIPRTLIQNCGANP 455 (527)
T ss_pred ccCCcccCCccHHHHHHHHHHHHHHhhccchhcc-chhhhhcCceeccHHHHhhcCccH
Confidence 9998 99999999999999999988888888887 599999999999999999999874
No 41
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-57 Score=449.66 Aligned_cols=390 Identities=22% Similarity=0.342 Sum_probs=342.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhcccccCCCc
Q 011103 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGC 119 (493)
Q Consensus 40 ~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~~~GDGT 119 (493)
..++..|+++...+.+.+++.+||+|..||++++.|++++|+||.+.+++|+++||. +-++..+|..||+..||||
T Consensus 16 ~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPT----a~lIakaatAqdd~tGDGt 91 (520)
T KOG0359|consen 16 QAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPT----ASLIAKVATAQDDITGDGT 91 (520)
T ss_pred hcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCch----HHHHHHHHHHhhcccCCCc
Confidence 356777888888999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccChHHHHHHHHHhcCCc------hhHhHHHHH
Q 011103 120 TTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGND------YTVGKMISD 193 (493)
Q Consensus 120 Tt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~L~~va~ts~~~~------~~l~~li~~ 193 (493)
||+|+|.++|++++..++..|+||..|..||+.|.+.++++|++.+.+++...|..+++++++.+ +.+++++++
T Consensus 92 tS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~ 171 (520)
T KOG0359|consen 92 TSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVDRETLKDVARTSLRTKVHAELADVLTPIVVD 171 (520)
T ss_pred ceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchhHHHHHHHHHHhhcCcccHHHHhHhHHHHHh
Confidence 99999999999999999999999999999999999999999998888887778999999999863 778899999
Q ss_pred HHHhhcc-CCce-------EeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccC-------C-
Q 011103 194 ALQQVGR-NGVV-------TIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKI-------K- 257 (493)
Q Consensus 194 Ai~~v~~-~g~I-------~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i-------~- 257 (493)
|+..+.+ ++.| ...+..+..|+ .+++|.++++|-.||. |++.++|++||++|.++ +
T Consensus 172 aVl~i~~~~~~idl~mveim~mq~~s~~dT-~~v~glvLdhg~rHpd-------mp~~~e~a~iL~~NvSLEYEK~Eins 243 (520)
T KOG0359|consen 172 SVLCIRRQEEPIDLFMVEIMEMQHKSLHDT-SLVQGLVLDHGARHPD-------MPRRVEDAYILICNVSLEYEKPEINS 243 (520)
T ss_pred hheeeccCCCCcchhHHHhhhhccCchhhh-HHhhhhhccCCCCCcc-------cccchhceEEEEeecccccccccccc
Confidence 9998873 3322 22366777888 7999999999999984 77889999999999753 2
Q ss_pred -----CHHH---H--------HHHHHHHHHcCC---CEE-EEecCchHHHHHHHHHhhccccceeeeeecCcccccccch
Q 011103 258 -----NPKD---M--------FKILDSAVKEKY---PIV-IVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHY 317 (493)
Q Consensus 258 -----~~~e---l--------~~~le~i~~~g~---~lv-ii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~ 317 (493)
+.+| + .+-+.++.+.+. .+| |-+++|||..++.|..+ +|+|++ +-++..
T Consensus 244 gffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~------gIlaLR-----RAKRRN 312 (520)
T KOG0359|consen 244 GFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKS------GILALR-----RAKRRN 312 (520)
T ss_pred chhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhc------chHHHH-----HHhhhh
Confidence 2332 1 112344444443 345 44799999999999776 367775 567899
Q ss_pred HHHHHHHhCCeeeecccCccccCCCCCcccceeEEEE---ecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHH
Q 011103 318 LDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVI---TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNIL 394 (493)
Q Consensus 318 l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i---~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l 394 (493)
|||+..+|||..+. +++|++++.||+|+.++. ++++|+|+++|.+|
T Consensus 313 mERL~lacGG~a~n-----svddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p-------------------------- 361 (520)
T KOG0359|consen 313 MERLVLACGGEAVN-----SVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNP-------------------------- 361 (520)
T ss_pred HHHHHHhhccceec-----ccccCChhhccccceeEEeeccceeeEeeecCCCC--------------------------
Confidence 99999999999998 599999999999999985 69999999999887
Q ss_pred HHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHH
Q 011103 395 NERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEI 473 (493)
Q Consensus 395 ~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~ 473 (493)
+.+||+++|||.+.+.+++++++|++++++++++++ ++||+|++|+.++.+|+....+.+++.+ +|+++
T Consensus 362 ---------~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~-~g~~a 431 (520)
T KOG0359|consen 362 ---------SSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGRAY-LGVKA 431 (520)
T ss_pred ---------cceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHHhhhccCchhh-hhHHH
Confidence 367999999999999999999999999999999998 9999999999999999988888889887 59999
Q ss_pred HHHHHHHHHHHHHHhcCCCC
Q 011103 474 FKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 474 ~a~AL~~i~~~L~~NaG~~~ 493 (493)
|++||..+|++|++|+|+++
T Consensus 432 fa~all~ipk~La~nsg~D~ 451 (520)
T KOG0359|consen 432 FANALLVIPKTLAKNSGLDE 451 (520)
T ss_pred HHhhhhhhhHHHHHhcCCch
Confidence 99999999999999999984
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-53 Score=409.44 Aligned_cols=301 Identities=25% Similarity=0.350 Sum_probs=277.8
Q ss_pred eccCCcHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhhccc
Q 011103 34 VYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTND 113 (493)
Q Consensus 34 i~~g~~~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~~d~ 113 (493)
-.|| -++.++++-+..++++++++|+||+|++|+.+.+.|++.+|||| .|+. ++|+...+.+||.
T Consensus 23 Ri~G--~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~I----akLmv~LS~sqd~ 87 (400)
T KOG0357|consen 23 RLFG--LDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQI----AKLIVILSKSQDD 87 (400)
T ss_pred hhhH--HHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHH----HHHHHHhcccchh
Confidence 3567 78999999999999999999999999999999999999999999 6787 9999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccChHHHHHHHHHhcCCchhHhHHHHH
Q 011103 114 LAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISD 193 (493)
Q Consensus 114 ~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~L~~va~ts~~~~~~l~~li~~ 193 (493)
++|||||.+++|++.+++++.+++..|+||..|.+||..+.+.+++.|++.+.+++
T Consensus 88 eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e------------------------ 143 (400)
T KOG0357|consen 88 EIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE------------------------ 143 (400)
T ss_pred hhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc------------------------
Confidence 99999999999999999999999999999999999999999999998877665532
Q ss_pred HHHhhccCCceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCCCHHHHHHHHHHHHHcC
Q 011103 194 ALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEK 273 (493)
Q Consensus 194 Ai~~v~~~g~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~el~~~le~i~~~g 273 (493)
+..++++++++|
T Consensus 144 --------------------------------------------------------------------f~emi~~vK~~g 155 (400)
T KOG0357|consen 144 --------------------------------------------------------------------FEEMIQQIKETG 155 (400)
T ss_pred --------------------------------------------------------------------HHHHHHHHHhhC
Confidence 344678999999
Q ss_pred CCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCeeeecccCccccCCCCCcccceeEEE
Q 011103 274 YPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVV 353 (493)
Q Consensus 274 ~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~ 353 (493)
.+++||+|+|||+|.++|..|.+ -||| |+.-.++|-||++|||++++ ++++++++.||+|+.|.
T Consensus 156 a~l~icqwgfddeanhll~~n~l------pavr-----wVGGpEiEliAiaT~grIVp-----rF~eL~~~kLG~aglVr 219 (400)
T KOG0357|consen 156 ANLAICQWGFDDEANHLLLQNNL------PAVR-----WVGGPEIELIAIATGGRIVP-----RFSELTAEKLGFAGLVR 219 (400)
T ss_pred CcEEEEecccCchhhhHHhhcCC------Ccee-----ecCCcceEEEEeecCCeeec-----cHhhhCHhhccccceEE
Confidence 99999999999999999999875 3565 56677899999999999999 69999999999999997
Q ss_pred E-----ecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHH
Q 011103 354 I-----TKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDA 428 (493)
Q Consensus 354 i-----~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dA 428 (493)
. ++|++.+++.|++++ ..||.+||.|..+++|.+|++|||
T Consensus 220 E~sfgttkdkmlviEqc~nsk-----------------------------------aVTifvRg~Nkmii~Eakrslhda 264 (400)
T KOG0357|consen 220 EISFGTTKDKMLVIEQCKNSK-----------------------------------AVTIFVRGGNKMIIEEAKRSLHDA 264 (400)
T ss_pred EEecccccceEEEEEecCCCc-----------------------------------eEEEEEecCcceeHHHHHHHhhhh
Confidence 4 489999999998764 568999999999999999999999
Q ss_pred HHHHHHHHhcC-ccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 429 LNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 429 l~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
||++|+.+++. +|+|||++|+.||-++.+.+.++++.+|+ ++.+|++||++||..||+|+|++|
T Consensus 265 lCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqy-a~rafa~ale~ipmalaensgl~p 329 (400)
T KOG0357|consen 265 LCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQY-AFRAFADALESIPMALAENSGLDP 329 (400)
T ss_pred HHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHH-HHHHHHHHHhhcchhhhhccCCCc
Confidence 99999999998 99999999999999999999999999996 799999999999999999999987
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.96 E-value=4.4e-28 Score=231.80 Aligned_cols=191 Identities=34% Similarity=0.482 Sum_probs=167.7
Q ss_pred HHHHHHHHhcC-----CchhHhHHHHHHHHhhccC------Cc--eEeecCCCcccceeeeeceEEecccCCCccccCcC
Q 011103 172 ELADVAAVSAG-----NDYTVGKMISDALQQVGRN------GV--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQ 238 (493)
Q Consensus 172 ~L~~va~ts~~-----~~~~l~~li~~Ai~~v~~~------g~--I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~ 238 (493)
.|.++|+|+++ +++.|++++++|+..++++ +. |.+.+|+++.|| ++++|++|+++|.+|+|
T Consensus 3 ~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds-~li~Gv~~~~~~~~~~m----- 76 (209)
T cd03333 3 LLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDS-ELVVGVVFDKGYASPYM----- 76 (209)
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhc-eeEeeEEEeccccCCCC-----
Confidence 47889999998 7899999999999999873 34 455799999999 89999999999999864
Q ss_pred CceeEecceeEEEecccCCCHHHHHHHHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchH
Q 011103 239 KRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYL 318 (493)
Q Consensus 239 ~~~~~~~n~~Ill~d~~i~~~~el~~~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l 318 (493)
+.+++||+|+++++++.. +|+++++|++.++++|..+ +|+||+ ++++++|
T Consensus 77 --~~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~~------~I~~v~-----~~~~~~l 126 (209)
T cd03333 77 --PKRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAKA------GIMAVR-----RVKKEDL 126 (209)
T ss_pred --CeEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHHC------CCEEEE-----eCCHHHH
Confidence 678999999999999876 8888999999999998775 478887 4678999
Q ss_pred HHHHHHhCCeeeecccCccccCCCCCcccceeEEEEe---cCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHHH
Q 011103 319 DDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---KDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILN 395 (493)
Q Consensus 319 ~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~---~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~ 395 (493)
+|||++|||++++ ++++++++.||+|+++++. ++.+++|.+|..
T Consensus 127 ~~ia~~tga~ii~-----~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~---------------------------- 173 (209)
T cd03333 127 ERIARATGATIVS-----SLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKG---------------------------- 173 (209)
T ss_pred HHHHHHHCCEEec-----ccccCChhhceeeeEEEEEEECCeEEEEEEcCCC----------------------------
Confidence 9999999999999 4788888999999999985 456889988753
Q ss_pred HHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhc
Q 011103 396 ERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEE 438 (493)
Q Consensus 396 ~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~ 438 (493)
+..+||+|||+|+.+++|.||+++||++|+++++++
T Consensus 174 -------~~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 174 -------GKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred -------CCEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 347899999999999999999999999999999864
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.95 E-value=6.8e-27 Score=230.37 Aligned_cols=199 Identities=16% Similarity=0.176 Sum_probs=166.7
Q ss_pred CchhHhHHHHHHHHhhccC----------Cc--eEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEE
Q 011103 183 NDYTVGKMISDALQQVGRN----------GV--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLL 250 (493)
Q Consensus 183 ~~~~l~~li~~Ai~~v~~~----------g~--I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Il 250 (493)
+.+.|++++++|+..+.++ .. |.+.+|++++|| ++++|+++++.+.++ +|+++++||+|+
T Consensus 19 ~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS-~li~Gvvi~k~~~~~-------~m~~~i~n~kIl 90 (261)
T cd03334 19 WLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDS-EVVDGVVFTKNVAHK-------RMPSKIKNPRIL 90 (261)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHc-EEEeeEEEeCCCCCc-------cCCcccCCCcEE
Confidence 4688999999999998532 11 455799999999 999999999998765 477889999999
Q ss_pred EecccCC------CHHH-----------HHHHHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCccccc
Q 011103 251 LVDKKIK------NPKD-----------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313 (493)
Q Consensus 251 l~d~~i~------~~~e-----------l~~~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~ 313 (493)
++++++. ++++ +.++++++.+.|+++|+++++|++.++++|..+ +|++++ ++
T Consensus 91 ll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~------gI~~v~-----~v 159 (261)
T cd03334 91 LLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEA------GITLVL-----NV 159 (261)
T ss_pred EEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHC------CCEEEE-----ec
Confidence 9998763 2222 344678899999999999999999999999776 467776 66
Q ss_pred ccchHHHHHHHhCCeeeecccCccccCCCCCcccceeEEEEe---c-----CeEEEEecCCChhhHHHHHHHHHHHHhhh
Q 011103 314 KSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT---K-----DSTLIVTDGSTRAAVEKRISEIRSLAEIT 385 (493)
Q Consensus 314 ~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~---~-----~~~~~~~g~~~~~~i~~~~~~l~~~~~~~ 385 (493)
++++|++||++|||+++++. .++++++.||+|+.|++. + ++++||++|+.+
T Consensus 160 ~~~dl~rIa~~tGa~ii~~i----~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~----------------- 218 (261)
T cd03334 160 KPSVLERISRCTGADIISSM----DDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKE----------------- 218 (261)
T ss_pred CHHHHHHHHHHhCCEEecCh----hhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCC-----------------
Confidence 78999999999999999940 347788899999999873 2 589999998643
Q ss_pred hHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHHHhcC
Q 011103 386 EERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEG 439 (493)
Q Consensus 386 ~~~~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~al~~g 439 (493)
..+||+|||+|+..++|.||+++||+++++++..+.
T Consensus 219 ------------------~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 219 ------------------LGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred ------------------ceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 368999999999999999999999999999998775
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.19 E-value=1.4e-10 Score=131.58 Aligned_cols=206 Identities=14% Similarity=0.233 Sum_probs=161.3
Q ss_pred chhHhHHHHHHHHhhccC----------Cc--eEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEE
Q 011103 184 DYTVGKMISDALQQVGRN----------GV--VTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLL 251 (493)
Q Consensus 184 ~~~l~~li~~Ai~~v~~~----------g~--I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill 251 (493)
.+.+..++++|...+.++ +. |+.+.||+..|| +++.|+++.+...+ +.|..++++|+|++
T Consensus 334 ~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS-~vi~Gvv~sKn~~~-------k~M~~~~e~prill 405 (1598)
T KOG0230|consen 334 LDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDS-EVIKGVVCSKNVAH-------KRMATKYENPRILL 405 (1598)
T ss_pred HHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccc-eeeeEEEeecchhh-------hhhhhhccCCceEE
Confidence 567888889999888775 12 456799999999 99999999988665 35777899999999
Q ss_pred eccc---------CCCHHH--------HHHHHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccc
Q 011103 252 VDKK---------IKNPKD--------MFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERK 314 (493)
Q Consensus 252 ~d~~---------i~~~~e--------l~~~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~ 314 (493)
+.+. +.+++. +...+.++...+.+++++.++|++.|..+|..- |+.-+. +++
T Consensus 406 l~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k---~I~lvl--------nvK 474 (1598)
T KOG0230|consen 406 LGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDK---GISLVL--------NVK 474 (1598)
T ss_pred EecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhcc---CeEEEE--------ecc
Confidence 8764 233332 334567788889999999999999999988442 332222 778
Q ss_pred cchHHHHHHHhCCeeeecccCccccCCCCCcccceeEEEEe--------cCeEEEEecCCChhhHHHHHHHHHHHHhhhh
Q 011103 315 SHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVIT--------KDSTLIVTDGSTRAAVEKRISEIRSLAEITE 386 (493)
Q Consensus 315 ~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~--------~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~ 386 (493)
...|+||+++||+.|++ +++.++...||+|..+++. ...++||+||+.+-
T Consensus 475 ~s~leRIsR~tga~I~~-----siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~l----------------- 532 (1598)
T KOG0230|consen 475 RSLLERISRCTGADIVP-----SVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPL----------------- 532 (1598)
T ss_pred HHHHHHHHHHhcCceec-----chhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCC-----------------
Confidence 89999999999999998 5788999999999999863 23467899987642
Q ss_pred HHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHHHHHHHH-HhcCccccCchhh
Q 011103 387 ERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAA-IEEGIVVGGGCSL 448 (493)
Q Consensus 387 ~~~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl~a~~~a-l~~gvvpGGG~~e 448 (493)
=+||++||.+..++.+.++-++-++-|+.+. ++..++.--|+..
T Consensus 533 ------------------G~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi 577 (1598)
T KOG0230|consen 533 ------------------GCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASI 577 (1598)
T ss_pred ------------------CceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCcc
Confidence 2479999999999999999999999888655 4555666666543
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00029 Score=76.27 Aligned_cols=88 Identities=20% Similarity=0.163 Sum_probs=72.1
Q ss_pred HHHHHHHHHcCCC-EEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchH-HHHHHHhCCeeeecccCccccC
Q 011103 263 FKILDSAVKEKYP-IVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYL-DDIAILTGGLVIRDEMGLTLDK 340 (493)
Q Consensus 263 ~~~le~i~~~g~~-lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l-~~ia~~tG~~ii~~~~~~~~~~ 340 (493)
..+++.+.+.|.| +++++++|+|.++++|..+ .|.+++ ++.++++ ++|+.+|||++++ ..++
T Consensus 260 ~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~------~Ilt~~-----~v~~~dl~~~l~~~~ga~~v~-----~~~d 323 (524)
T COG0459 260 ATLVVNILRGGANVVVVKAPGIDDLAKAYLEDI------AILTGR-----RVKKEDLGERLAKLGGAKIVS-----VLKD 323 (524)
T ss_pred HHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhh------cceecc-----eecchhhHHHHHHccCceEEe-----eccc
Confidence 3456677889999 8899999999999999766 366665 5567888 7999999999999 5899
Q ss_pred CCCCcccc--eeEEEEe---cCeEEEEecCC
Q 011103 341 AGKEVLGT--AIKVVIT---KDSTLIVTDGS 366 (493)
Q Consensus 341 ~~~~~lG~--~~~v~i~---~~~~~~~~g~~ 366 (493)
.++..+|. |+.++.. ++++++|.+|.
T Consensus 324 ~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~ 354 (524)
T COG0459 324 LTTIVLGEGAAGLVEETKTGDYDMEKLQERK 354 (524)
T ss_pred CceeecCccccceEEEeeccchhhhhhhhhh
Confidence 99999999 9999863 56777777664
No 47
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=45.19 E-value=6 Score=43.23 Aligned_cols=61 Identities=30% Similarity=0.401 Sum_probs=50.3
Q ss_pred cCCCEEEEecCchH-----HHHHHHHHhhcccc----ceeeeeecCcccccccchHHHHHHHhCCeeeecc
Q 011103 272 EKYPIVIVAEDIEQ-----QALALLIRNKLRGV----LKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDE 333 (493)
Q Consensus 272 ~g~~lvii~~~i~~-----~al~~L~~n~~~g~----~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~ 333 (493)
...++.+..+++++ +++..++.++.++. .++++++.| +++...++|++.+++++.++...+
T Consensus 246 ~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~d 315 (522)
T TIGR02345 246 EKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDED 315 (522)
T ss_pred cccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHHH
Confidence 34477888889988 88888888887764 388999988 999999999999999999887754
No 48
>smart00574 POX domain associated with HOX domains.
Probab=40.45 E-value=87 Score=27.88 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhh
Q 011103 416 VELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKE 460 (493)
Q Consensus 416 ~~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~ 460 (493)
..++|++++++--..=++..+..- .|+|.|++-.+.+-+|+..+.
T Consensus 84 ~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~Sr 129 (140)
T smart00574 84 SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTISR 129 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 356777777777777777666664 789999988888888877663
No 49
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=37.42 E-value=88 Score=27.91 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcC-ccccCchhhhHHHHHHHhHhh
Q 011103 417 ELKDKQLRIEDALNATKAAIEEG-IVVGGGCSLLRLSAKVEGIKE 460 (493)
Q Consensus 417 ~l~E~~~~~~dAl~a~~~al~~g-vvpGGG~~e~~ls~~L~~~~~ 460 (493)
.++|+.++++--..=++..+..- .|.|.|++-.+.+-+|+..+.
T Consensus 85 mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqamSr 129 (140)
T PF07526_consen 85 MLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAMSR 129 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 46666666666555555555554 688999998888888887663
No 50
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=36.69 E-value=1.1e+02 Score=26.33 Aligned_cols=42 Identities=24% Similarity=0.435 Sum_probs=31.1
Q ss_pred EEecccCCCHHHHHHHHHHHHHcCCCEEEEecCchHHHHHHHHH
Q 011103 250 LLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIR 293 (493)
Q Consensus 250 ll~d~~i~~~~el~~~le~i~~~g~~lvii~~~i~~~al~~L~~ 293 (493)
.++|+. +++.....++.+.+.|+|+|+...+++++-+..+-.
T Consensus 70 VvIDfT--~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~ 111 (124)
T PF01113_consen 70 VVIDFT--NPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEE 111 (124)
T ss_dssp EEEEES---HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHH
T ss_pred EEEEcC--ChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH
Confidence 445653 788888889999999999999999999887776643
No 51
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=34.64 E-value=1.7e+02 Score=23.66 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=32.4
Q ss_pred HHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCe
Q 011103 266 LDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGL 328 (493)
Q Consensus 266 le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ 328 (493)
++.+.+-.+.+|++++|+++....-|..--.+-.+.++ .. ..+++|.++||-.
T Consensus 22 ~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v--~V--------~s~~~LGkAcgi~ 74 (84)
T PRK13600 22 LKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVS--FF--------KSKHALGKHVGIN 74 (84)
T ss_pred HHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEE--EE--------CCHHHHHHHhCCC
Confidence 45555566789999999999876644321111112233 22 3567888888865
No 52
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=29.98 E-value=38 Score=36.12 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhcCccccCchhhhHHHHHHHhHhhh
Q 011103 422 QLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKEL 461 (493)
Q Consensus 422 ~~~~~dAl~a~~~al~~gvvpGGG~~e~~ls~~L~~~~~~ 461 (493)
++.+.+|+.++|++.+-=+|.|||+-+-.+...|..++++
T Consensus 216 ~~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~E~ 255 (617)
T COG3962 216 ERELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFAET 255 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHHHh
Confidence 4667789999998844449999999999999999988864
No 53
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=22.15 E-value=99 Score=25.10 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCceEeec
Q 011103 40 GSATKKLQAGVDLVAELVGVTLGPKGRNVVLQN 72 (493)
Q Consensus 40 ~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~ 72 (493)
++.+..+...+..+++.++..|||.|.+..+.+
T Consensus 45 ~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~ 77 (98)
T PF01230_consen 45 PEERAELMQLVQKVAKALKEAFGPDGYNVIINN 77 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcccccceeeccccc
Confidence 678899999999999999999999999977754
No 54
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=21.12 E-value=1.3e+02 Score=27.26 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Q 011103 470 GAEIFKRALSYPTKLIAKNAGPIQ 493 (493)
Q Consensus 470 ~~~~~a~AL~~i~~~L~~NaG~~~ 493 (493)
.++++.+.|+..|-+|-++||++|
T Consensus 102 ~~Kav~q~LetlPD~LERd~gL~p 125 (152)
T PF07278_consen 102 MAKAVVQVLETLPDILERDAGLPP 125 (152)
T ss_pred HHHHHHHHHHHhhHHHHhcCCCCH
Confidence 478999999999999999999975
No 55
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=21.12 E-value=1.3e+02 Score=30.46 Aligned_cols=44 Identities=18% Similarity=0.410 Sum_probs=36.6
Q ss_pred ecceeEEEecccCCCH-----HHHHHHHHHHH-HcCCCEEEEecCchHHH
Q 011103 244 FHDGKLLLVDKKIKNP-----KDMFKILDSAV-KEKYPIVIVAEDIEQQA 287 (493)
Q Consensus 244 ~~n~~Ill~d~~i~~~-----~el~~~le~i~-~~g~~lvii~~~i~~~a 287 (493)
+..|.+++.|.++.+. .|++|++|++. +.++|++-+.-++++.+
T Consensus 144 Lt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~ 193 (352)
T COG4148 144 LTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVL 193 (352)
T ss_pred hcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHH
Confidence 5688899999987764 58999999986 57899999999888754
No 56
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=20.08 E-value=8.8e+02 Score=24.22 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=26.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHhcCcccc
Q 011103 413 QTVVELKDKQLRIEDALNATKAAIEEGIVVG 443 (493)
Q Consensus 413 ~t~~~l~E~~~~~~dAl~a~~~al~~gvvpG 443 (493)
.|-..+...-+.++-|+-|.|+|+..|+||-
T Consensus 232 enFkll~~LAdklgaavGAtRaaVDaGyvpN 262 (336)
T KOG3954|consen 232 ENFKLLYDLADKLGAAVGATRAAVDAGYVPN 262 (336)
T ss_pred ccceehHHHHHHhchhhchhhhhhccCcCCC
Confidence 4566788888999999999999999998875
No 57
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=20.03 E-value=3.6e+02 Score=21.62 Aligned_cols=52 Identities=15% Similarity=0.256 Sum_probs=32.9
Q ss_pred HHHHHHcCCCEEEEecCchHHHHHHHHH--hhccccceeeeeecCcccccccchHHHHHHHhCCee
Q 011103 266 LDSAVKEKYPIVIVAEDIEQQALALLIR--NKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLV 329 (493)
Q Consensus 266 le~i~~~g~~lvii~~~i~~~al~~L~~--n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~i 329 (493)
++.+.+..+.+||++.|.++.....|.. +. .+ +.+ + .....++|..+||-.+
T Consensus 17 lkaIk~gkakLViiA~Da~~~~~k~i~~~c~~-~~-Vpv--~--------~~~t~~eLG~A~G~~v 70 (82)
T PRK13601 17 LKAITNCNVLQVYIAKDAEEHVTKKIKELCEE-KS-IKI--V--------YIDTMKELGVMCGIDV 70 (82)
T ss_pred HHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHh-CC-CCE--E--------EeCCHHHHHHHHCCcc
Confidence 4555566679999999999877766531 11 11 122 1 1235678888888754
Done!