Query 011104
Match_columns 493
No_of_seqs 289 out of 2674
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 20:53:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011104.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011104hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 2.3E-64 7.8E-69 500.8 37.0 381 89-488 45-430 (434)
2 3fmp_B ATP-dependent RNA helic 100.0 1.4E-62 4.9E-67 495.9 23.4 387 94-493 86-474 (479)
3 3fht_A ATP-dependent RNA helic 100.0 2.3E-59 7.9E-64 464.4 42.8 389 92-493 17-407 (412)
4 2j0s_A ATP-dependent RNA helic 100.0 2E-60 6.7E-65 471.6 34.8 373 98-490 35-407 (410)
5 3pey_A ATP-dependent RNA helic 100.0 8.5E-59 2.9E-63 457.7 39.5 379 99-491 4-383 (395)
6 2i4i_A ATP-dependent RNA helic 100.0 9.4E-59 3.2E-63 460.7 32.4 377 92-485 7-402 (417)
7 3eiq_A Eukaryotic initiation f 100.0 1.3E-58 4.3E-63 459.4 32.9 375 98-491 38-412 (414)
8 1xti_A Probable ATP-dependent 100.0 1.3E-57 4.5E-62 448.6 35.4 372 100-489 8-381 (391)
9 1s2m_A Putative ATP-dependent 100.0 4.4E-57 1.5E-61 446.1 36.2 372 98-491 19-390 (400)
10 1fuu_A Yeast initiation factor 100.0 5.7E-58 2E-62 451.7 18.2 372 99-491 20-391 (394)
11 3sqw_A ATP-dependent RNA helic 100.0 3.2E-56 1.1E-60 458.7 31.4 368 107-486 28-418 (579)
12 3i5x_A ATP-dependent RNA helic 100.0 1.4E-55 4.7E-60 454.0 31.4 368 107-486 79-469 (563)
13 1hv8_A Putative ATP-dependent 100.0 2.7E-54 9.3E-59 421.3 36.6 361 99-486 5-365 (367)
14 3fho_A ATP-dependent RNA helic 100.0 1.5E-55 5.1E-60 445.7 23.3 380 99-492 118-497 (508)
15 2z0m_A 337AA long hypothetical 100.0 4.5E-52 1.5E-56 400.7 31.8 336 107-480 1-336 (337)
16 2v1x_A ATP-dependent DNA helic 100.0 8.4E-52 2.9E-56 421.7 31.2 341 101-466 22-375 (591)
17 3l9o_A ATP-dependent RNA helic 100.0 1.9E-51 6.5E-56 444.4 25.2 348 100-474 162-606 (1108)
18 1oyw_A RECQ helicase, ATP-depe 100.0 2.2E-50 7.5E-55 407.6 26.9 339 100-466 2-344 (523)
19 3oiy_A Reverse gyrase helicase 100.0 1.6E-50 5.5E-55 400.5 23.7 343 110-487 9-386 (414)
20 2va8_A SSO2462, SKI2-type heli 100.0 1.2E-46 3.9E-51 397.3 35.3 358 99-485 7-426 (715)
21 2zj8_A DNA helicase, putative 100.0 5.4E-47 1.9E-51 399.6 28.2 351 101-487 2-406 (720)
22 2p6r_A Afuhel308 helicase; pro 100.0 4.7E-48 1.6E-52 406.6 19.8 351 101-485 2-405 (702)
23 4ddu_A Reverse gyrase; topoiso 100.0 3E-47 1E-51 411.6 24.8 339 112-479 68-503 (1104)
24 1tf5_A Preprotein translocase 100.0 1.1E-47 3.6E-52 390.9 19.2 328 118-467 79-547 (844)
25 2ykg_A Probable ATP-dependent 100.0 5.4E-47 1.9E-51 399.9 20.2 358 114-487 5-541 (696)
26 3tbk_A RIG-I helicase domain; 100.0 2.5E-46 8.7E-51 385.3 23.1 329 123-466 4-508 (555)
27 4a2p_A RIG-I, retinoic acid in 100.0 1.1E-46 3.8E-51 388.0 19.2 331 119-466 3-509 (556)
28 2xgj_A ATP-dependent RNA helic 100.0 3E-44 1E-48 385.1 33.1 326 118-474 82-508 (1010)
29 1gku_B Reverse gyrase, TOP-RG; 100.0 2.5E-46 8.5E-51 404.9 16.8 340 111-480 46-468 (1054)
30 2fsf_A Preprotein translocase 100.0 1E-45 3.5E-50 375.2 20.0 328 118-467 70-585 (853)
31 4a2q_A RIG-I, retinoic acid in 100.0 6.3E-45 2.2E-49 387.4 25.2 331 119-466 244-750 (797)
32 1nkt_A Preprotein translocase 100.0 4.9E-45 1.7E-49 370.4 21.7 329 117-467 106-619 (922)
33 4a2w_A RIG-I, retinoic acid in 100.0 1.3E-43 4.5E-48 380.8 27.4 332 119-466 244-750 (936)
34 4a4z_A Antiviral helicase SKI2 100.0 8E-43 2.7E-47 374.2 28.2 332 117-474 34-502 (997)
35 1wp9_A ATP-dependent RNA helic 100.0 1.4E-42 4.8E-47 351.7 25.3 323 123-466 9-476 (494)
36 1gm5_A RECG; helicase, replica 100.0 1.5E-43 5.1E-48 368.2 17.2 326 108-464 354-696 (780)
37 2whx_A Serine protease/ntpase/ 100.0 8E-44 2.7E-48 364.0 13.4 316 105-478 155-493 (618)
38 4gl2_A Interferon-induced heli 100.0 2.5E-43 8.6E-48 372.1 16.9 328 123-466 7-519 (699)
39 2eyq_A TRCF, transcription-rep 100.0 1E-41 3.4E-46 371.0 29.5 329 105-465 586-922 (1151)
40 2xau_A PRE-mRNA-splicing facto 100.0 1.6E-42 5.6E-47 363.0 21.5 342 98-465 70-443 (773)
41 4f92_B U5 small nuclear ribonu 100.0 7.5E-42 2.6E-46 381.8 26.9 351 107-469 911-1312(1724)
42 2jlq_A Serine protease subunit 100.0 8.3E-43 2.8E-47 346.7 17.2 288 120-464 1-310 (451)
43 4f92_B U5 small nuclear ribonu 100.0 2.6E-41 8.9E-46 377.5 27.4 344 120-475 76-483 (1724)
44 2oca_A DAR protein, ATP-depend 100.0 1.7E-40 5.8E-45 337.5 23.5 314 121-463 111-453 (510)
45 2wv9_A Flavivirin protease NS2 100.0 8.3E-42 2.8E-46 351.0 11.6 316 114-478 202-548 (673)
46 3o8b_A HCV NS3 protease/helica 100.0 4.3E-41 1.5E-45 340.1 15.7 276 126-467 220-516 (666)
47 1yks_A Genome polyprotein [con 100.0 3.4E-42 1.2E-46 340.6 6.5 287 134-485 4-321 (440)
48 3fmo_B ATP-dependent RNA helic 100.0 7.9E-39 2.7E-43 300.4 23.5 212 93-313 85-298 (300)
49 2fwr_A DNA repair protein RAD2 100.0 7.7E-39 2.6E-43 322.1 18.3 294 123-466 93-455 (472)
50 2z83_A Helicase/nucleoside tri 100.0 2E-39 6.9E-44 322.8 12.9 276 132-465 15-313 (459)
51 2v6i_A RNA helicase; membrane, 100.0 1E-37 3.5E-42 308.0 17.4 268 141-462 3-288 (431)
52 3h1t_A Type I site-specific re 100.0 1.1E-37 3.9E-42 321.7 16.0 302 123-454 178-545 (590)
53 3rc3_A ATP-dependent RNA helic 100.0 6.5E-36 2.2E-40 306.3 28.0 308 127-484 144-462 (677)
54 3fe2_A Probable ATP-dependent 100.0 8.8E-37 3E-41 278.7 17.0 216 91-315 20-240 (242)
55 3bor_A Human initiation factor 100.0 1.9E-35 6.3E-40 268.9 21.6 210 96-313 26-235 (237)
56 1wrb_A DJVLGB; RNA helicase, D 100.0 8.2E-36 2.8E-40 274.4 16.6 222 98-325 21-252 (253)
57 1q0u_A Bstdead; DEAD protein, 100.0 3.2E-35 1.1E-39 264.3 20.1 206 99-313 3-212 (219)
58 2oxc_A Probable ATP-dependent 100.0 3.2E-35 1.1E-39 266.2 19.4 212 92-312 16-228 (230)
59 1qde_A EIF4A, translation init 100.0 1.3E-34 4.3E-39 261.6 23.1 209 97-315 11-219 (224)
60 3dmq_A RNA polymerase-associat 100.0 1.1E-35 3.8E-40 319.6 19.1 323 122-461 152-609 (968)
61 3jux_A Protein translocase sub 100.0 1.1E-33 3.6E-38 281.4 31.6 330 116-467 69-589 (822)
62 3iuy_A Probable ATP-dependent 100.0 3.1E-35 1.1E-39 266.2 18.1 208 94-311 13-227 (228)
63 1vec_A ATP-dependent RNA helic 100.0 1E-34 3.6E-39 258.6 21.1 202 100-310 3-205 (206)
64 3ber_A Probable ATP-dependent 100.0 2.4E-35 8.4E-40 269.6 15.7 206 98-312 41-247 (249)
65 1z63_A Helicase of the SNF2/RA 100.0 1.2E-33 4E-38 286.4 27.4 312 123-466 37-454 (500)
66 3dkp_A Probable ATP-dependent 100.0 1.7E-34 5.7E-39 264.4 19.0 219 91-315 16-243 (245)
67 2pl3_A Probable ATP-dependent 100.0 3.6E-34 1.2E-38 260.7 18.7 207 97-313 22-233 (236)
68 1t6n_A Probable ATP-dependent 100.0 4.8E-34 1.7E-38 256.9 17.0 206 99-311 13-219 (220)
69 3ly5_A ATP-dependent RNA helic 100.0 4E-34 1.4E-38 263.6 16.0 202 98-308 50-258 (262)
70 2gxq_A Heat resistant RNA depe 100.0 2E-33 6.9E-38 250.5 18.8 201 101-312 2-205 (207)
71 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.3E-32 4.3E-37 293.4 20.6 332 122-480 270-722 (1038)
72 3mwy_W Chromo domain-containin 100.0 5.6E-31 1.9E-35 279.3 24.0 335 123-479 236-699 (800)
73 1z3i_X Similar to RAD54-like; 100.0 2E-29 6.8E-34 260.9 31.3 325 123-466 55-529 (644)
74 2ipc_A Preprotein translocase 100.0 2.6E-29 8.9E-34 254.6 29.3 241 116-371 73-464 (997)
75 2rb4_A ATP-dependent RNA helic 100.0 2.9E-29 1E-33 216.5 19.0 172 317-493 3-174 (175)
76 1c4o_A DNA nucleotide excision 100.0 3.1E-29 1.1E-33 259.0 21.0 128 335-466 424-551 (664)
77 1t5i_A C_terminal domain of A 100.0 9.9E-29 3.4E-33 212.1 16.6 160 319-489 3-162 (172)
78 1fuk_A Eukaryotic initiation f 100.0 5.3E-28 1.8E-32 206.5 20.6 160 320-490 2-161 (165)
79 2p6n_A ATP-dependent RNA helic 100.0 1.1E-28 3.8E-33 215.0 15.1 174 301-486 9-182 (191)
80 2hjv_A ATP-dependent RNA helic 100.0 1E-27 3.4E-32 204.2 19.9 158 317-486 5-162 (163)
81 3eaq_A Heat resistant RNA depe 99.9 3.8E-27 1.3E-31 209.3 16.1 157 323-491 7-163 (212)
82 3i32_A Heat resistant RNA depe 99.9 7.9E-27 2.7E-31 216.7 17.5 158 322-491 3-160 (300)
83 2jgn_A DBX, DDX3, ATP-dependen 99.9 7.3E-27 2.5E-31 202.7 13.8 159 317-486 15-173 (185)
84 2d7d_A Uvrabc system protein B 99.9 3.4E-26 1.2E-30 236.2 16.1 218 229-466 320-557 (661)
85 2yjt_D ATP-dependent RNA helic 99.9 1.2E-27 4E-32 205.3 0.0 158 321-489 3-160 (170)
86 2vl7_A XPD; helicase, unknown 99.9 5E-23 1.7E-27 208.6 20.7 316 119-463 4-519 (540)
87 3b6e_A Interferon-induced heli 99.9 2.8E-23 9.6E-28 186.0 10.9 167 119-291 29-216 (216)
88 3llm_A ATP-dependent RNA helic 99.9 1.8E-22 6.3E-27 182.7 14.9 159 122-296 60-222 (235)
89 3crv_A XPD/RAD3 related DNA he 99.9 1.7E-21 5.7E-26 198.3 21.9 325 123-464 3-530 (551)
90 1rif_A DAR protein, DNA helica 99.9 8.3E-22 2.8E-26 183.7 12.0 154 123-296 113-266 (282)
91 4a15_A XPD helicase, ATP-depen 99.8 2.5E-18 8.4E-23 176.1 20.9 123 349-480 447-594 (620)
92 1z5z_A Helicase of the SNF2/RA 99.8 7.3E-19 2.5E-23 161.3 14.6 128 331-466 93-225 (271)
93 2fz4_A DNA repair protein RAD2 99.8 1.2E-18 4.2E-23 157.1 13.9 137 123-294 93-230 (237)
94 1w36_D RECD, exodeoxyribonucle 99.0 4.8E-09 1.6E-13 107.4 14.4 146 125-291 151-298 (608)
95 3lfu_A DNA helicase II; SF1 he 98.4 1.3E-05 4.3E-10 83.4 18.3 70 123-196 9-79 (647)
96 3upu_A ATP-dependent DNA helic 98.1 8.3E-06 2.8E-10 80.7 8.8 71 119-191 21-94 (459)
97 3e1s_A Exodeoxyribonuclease V, 98.0 1.5E-05 5.1E-10 80.7 10.2 63 123-190 189-251 (574)
98 4b3f_X DNA-binding protein smu 97.9 6.5E-06 2.2E-10 85.2 5.7 69 123-195 189-257 (646)
99 3hgt_A HDA1 complex subunit 3; 97.9 0.00013 4.4E-09 66.9 13.5 134 332-477 107-249 (328)
100 2gk6_A Regulator of nonsense t 97.9 3E-05 1E-09 79.7 10.3 70 121-194 178-247 (624)
101 2o0j_A Terminase, DNA packagin 97.3 0.0026 8.9E-08 60.5 12.4 72 123-197 163-234 (385)
102 2xzl_A ATP-dependent helicase 97.0 0.00089 3E-08 70.5 6.7 70 122-195 359-428 (802)
103 3cpe_A Terminase, DNA packagin 97.0 0.0057 1.9E-07 62.4 12.5 73 123-198 163-235 (592)
104 3vkw_A Replicase large subunit 96.9 0.0013 4.3E-08 63.5 6.6 85 141-259 162-246 (446)
105 2wjy_A Regulator of nonsense t 96.9 0.0017 5.8E-08 68.2 7.9 69 123-195 356-424 (800)
106 2b8t_A Thymidine kinase; deoxy 96.8 0.0097 3.3E-07 52.0 11.1 90 141-260 13-102 (223)
107 3te6_A Regulatory protein SIR3 96.8 0.0065 2.2E-07 56.2 10.4 44 246-293 131-174 (318)
108 1uaa_A REP helicase, protein ( 96.8 0.002 6.7E-08 67.0 7.7 70 123-196 2-72 (673)
109 1a5t_A Delta prime, HOLB; zinc 96.6 0.01 3.5E-07 55.7 10.6 40 245-289 106-145 (334)
110 2orw_A Thymidine kinase; TMTK, 96.6 0.0053 1.8E-07 52.1 7.8 38 141-181 4-41 (184)
111 3ec2_A DNA replication protein 96.6 0.0066 2.3E-07 51.2 8.4 17 141-157 39-55 (180)
112 1xx6_A Thymidine kinase; NESG, 96.5 0.0087 3E-07 50.9 8.3 38 141-181 9-46 (191)
113 2j9r_A Thymidine kinase; TK1, 96.4 0.0063 2.1E-07 52.4 7.0 39 141-182 29-67 (214)
114 2kjq_A DNAA-related protein; s 96.4 0.0027 9.2E-08 51.8 4.6 43 246-292 82-124 (149)
115 3bos_A Putative DNA replicatio 96.4 0.0043 1.5E-07 55.1 5.8 17 141-157 53-69 (242)
116 3u4q_A ATP-dependent helicase/ 96.3 0.0055 1.9E-07 68.0 7.5 69 123-195 10-81 (1232)
117 1pjr_A PCRA; DNA repair, DNA r 96.3 0.0056 1.9E-07 64.0 7.0 69 123-195 11-80 (724)
118 4b4t_M 26S protease regulatory 96.2 0.0076 2.6E-07 58.2 6.8 56 97-157 175-232 (434)
119 1l8q_A Chromosomal replication 96.1 0.02 6.9E-07 53.4 9.5 17 141-157 38-54 (324)
120 2chg_A Replication factor C sm 96.1 0.055 1.9E-06 46.9 11.7 17 141-157 39-55 (226)
121 1gm5_A RECG; helicase, replica 96.1 0.029 9.9E-07 58.7 11.1 100 326-425 393-497 (780)
122 4b4t_J 26S protease regulatory 96.0 0.019 6.4E-07 54.6 8.6 55 98-157 143-199 (405)
123 3syl_A Protein CBBX; photosynt 95.9 0.019 6.5E-07 53.1 8.2 17 141-157 68-84 (309)
124 2zpa_A Uncharacterized protein 95.9 0.022 7.5E-07 57.8 9.0 115 123-293 175-289 (671)
125 3kl4_A SRP54, signal recogniti 95.9 0.026 8.8E-07 54.5 9.1 133 141-304 98-235 (433)
126 2orv_A Thymidine kinase; TP4A 95.8 0.02 6.9E-07 49.7 6.9 38 141-181 20-57 (234)
127 3u61_B DNA polymerase accessor 95.7 0.093 3.2E-06 48.8 12.0 42 100-157 23-65 (324)
128 4b4t_H 26S protease regulatory 95.6 0.037 1.3E-06 53.5 8.7 55 98-157 204-260 (467)
129 3vfd_A Spastin; ATPase, microt 95.5 0.083 2.8E-06 50.6 11.2 54 99-157 111-165 (389)
130 1d2n_A N-ethylmaleimide-sensit 95.5 0.13 4.3E-06 46.5 11.6 17 141-157 65-81 (272)
131 2qz4_A Paraplegin; AAA+, SPG7, 95.4 0.22 7.5E-06 44.5 13.1 17 141-157 40-56 (262)
132 2z4s_A Chromosomal replication 95.4 0.044 1.5E-06 53.5 8.8 17 141-157 131-147 (440)
133 1w4r_A Thymidine kinase; type 95.4 0.029 9.9E-07 47.4 6.3 37 141-180 21-57 (195)
134 2gno_A DNA polymerase III, gam 95.4 0.074 2.5E-06 49.0 9.6 40 245-289 80-119 (305)
135 3h4m_A Proteasome-activating n 95.3 0.056 1.9E-06 49.3 8.7 54 99-157 13-68 (285)
136 4b4t_L 26S protease subunit RP 95.3 0.032 1.1E-06 53.8 7.2 55 98-157 176-232 (437)
137 3dm5_A SRP54, signal recogniti 95.2 0.11 3.7E-06 50.2 10.6 133 141-304 101-236 (443)
138 4b4t_K 26S protease regulatory 95.2 0.072 2.5E-06 51.3 9.4 55 98-157 167-223 (428)
139 3oiy_A Reverse gyrase helicase 95.2 0.096 3.3E-06 50.6 10.4 98 327-424 41-145 (414)
140 3e2i_A Thymidine kinase; Zn-bi 95.1 0.014 4.9E-07 50.1 3.7 39 141-182 29-67 (219)
141 4b4t_I 26S protease regulatory 95.1 0.045 1.5E-06 52.3 7.5 56 97-157 176-233 (437)
142 2v1u_A Cell division control p 95.0 0.069 2.3E-06 51.0 8.6 17 141-157 45-61 (387)
143 1xwi_A SKD1 protein; VPS4B, AA 94.9 0.1 3.5E-06 48.5 9.4 52 99-157 8-62 (322)
144 3eie_A Vacuolar protein sortin 94.9 0.099 3.4E-06 48.6 9.2 52 99-157 14-68 (322)
145 2d7d_A Uvrabc system protein B 94.8 0.037 1.3E-06 57.0 6.4 69 123-197 12-83 (661)
146 1lv7_A FTSH; alpha/beta domain 94.7 0.49 1.7E-05 42.1 13.1 54 99-157 8-62 (257)
147 1sxj_E Activator 1 40 kDa subu 94.7 0.38 1.3E-05 45.2 12.8 43 100-157 11-53 (354)
148 3cf0_A Transitional endoplasmi 94.6 0.34 1.2E-05 44.5 12.0 54 99-157 11-66 (301)
149 1fnn_A CDC6P, cell division co 94.5 0.12 4.1E-06 49.3 9.1 16 142-157 46-61 (389)
150 1iqp_A RFCS; clamp loader, ext 94.5 0.27 9.2E-06 45.5 11.2 17 141-157 47-63 (327)
151 2w58_A DNAI, primosome compone 94.4 0.11 3.8E-06 44.4 7.7 17 141-157 55-71 (202)
152 1jr3_A DNA polymerase III subu 94.4 0.55 1.9E-05 44.4 13.3 17 141-157 39-55 (373)
153 2dr3_A UPF0273 protein PH0284; 94.2 0.27 9.4E-06 43.3 10.1 50 141-194 24-73 (247)
154 3pfi_A Holliday junction ATP-d 94.2 0.26 9E-06 46.0 10.4 44 101-157 27-72 (338)
155 1njg_A DNA polymerase III subu 94.1 0.95 3.3E-05 39.3 13.6 17 141-157 46-62 (250)
156 2qgz_A Helicase loader, putati 94.1 0.12 4E-06 47.7 7.6 17 141-157 153-169 (308)
157 3b9p_A CG5977-PA, isoform A; A 94.0 0.22 7.7E-06 45.5 9.3 54 99-157 17-71 (297)
158 2qby_B CDC6 homolog 3, cell di 94.0 0.092 3.2E-06 50.1 6.9 17 141-157 46-62 (384)
159 3cf2_A TER ATPase, transitiona 93.9 0.2 6.8E-06 52.3 9.5 56 97-157 471-528 (806)
160 2qp9_X Vacuolar protein sortin 93.7 0.18 6.3E-06 47.5 8.3 52 99-157 47-101 (355)
161 2eyq_A TRCF, transcription-rep 93.5 0.34 1.2E-05 53.3 11.1 101 324-424 626-731 (1151)
162 4ddu_A Reverse gyrase; topoiso 93.5 0.27 9.4E-06 53.7 10.3 99 326-424 97-202 (1104)
163 2px0_A Flagellar biosynthesis 93.5 0.17 5.7E-06 46.4 7.3 118 141-293 106-225 (296)
164 1sxj_D Activator 1 41 kDa subu 93.4 0.16 5.6E-06 47.7 7.6 17 141-157 59-75 (353)
165 2chq_A Replication factor C sm 93.4 0.42 1.4E-05 44.0 10.2 42 100-157 14-55 (319)
166 1sxj_B Activator 1 37 kDa subu 93.3 0.16 5.5E-06 47.0 7.1 17 141-157 43-59 (323)
167 2qby_A CDC6 homolog 1, cell di 93.2 0.18 6.1E-06 47.9 7.6 17 141-157 46-62 (386)
168 1ixz_A ATP-dependent metallopr 92.9 1.3 4.4E-05 39.2 12.3 55 98-157 11-66 (254)
169 1sxj_A Activator 1 95 kDa subu 92.9 0.48 1.6E-05 47.2 10.3 18 141-158 78-95 (516)
170 1g5t_A COB(I)alamin adenosyltr 92.3 0.84 2.9E-05 38.5 9.4 36 141-179 29-64 (196)
171 3hu3_A Transitional endoplasmi 92.0 0.67 2.3E-05 45.6 9.9 47 248-294 298-350 (489)
172 2w0m_A SSO2452; RECA, SSPF, un 91.9 0.32 1.1E-05 42.4 6.9 19 141-159 24-42 (235)
173 1sxj_C Activator 1 40 kDa subu 91.8 0.48 1.6E-05 44.3 8.3 16 142-157 48-63 (340)
174 2ce7_A Cell division protein F 91.8 0.56 1.9E-05 45.9 8.9 54 99-157 12-66 (476)
175 1t6n_A Probable ATP-dependent 91.7 2.6 9.1E-05 36.1 12.5 71 351-424 83-164 (220)
176 1cr0_A DNA primase/helicase; R 91.6 0.42 1.4E-05 43.6 7.6 19 141-159 36-54 (296)
177 1vma_A Cell division protein F 91.2 0.69 2.3E-05 42.4 8.4 17 141-157 105-121 (306)
178 3bor_A Human initiation factor 91.2 3.4 0.00012 35.9 12.8 146 326-481 71-229 (237)
179 3pvs_A Replication-associated 91.2 0.5 1.7E-05 46.0 7.8 17 141-157 51-67 (447)
180 3e70_C DPA, signal recognition 91.1 0.68 2.3E-05 42.9 8.3 55 247-304 211-265 (328)
181 2l8b_A Protein TRAI, DNA helic 90.9 0.2 6.7E-06 41.6 3.9 124 124-291 35-158 (189)
182 2gxq_A Heat resistant RNA depe 90.9 6.1 0.00021 33.2 13.9 72 349-424 71-150 (207)
183 3fe2_A Probable ATP-dependent 90.8 6.9 0.00024 34.1 14.5 71 350-424 102-182 (242)
184 1vec_A ATP-dependent RNA helic 90.7 3.1 0.00011 35.1 11.9 122 350-482 71-203 (206)
185 1oyw_A RECQ helicase, ATP-depe 90.5 2.2 7.5E-05 42.5 12.0 151 325-481 43-199 (523)
186 1w5s_A Origin recognition comp 90.5 0.8 2.7E-05 43.9 8.7 17 141-157 51-69 (412)
187 3n70_A Transport activator; si 90.5 0.44 1.5E-05 38.1 5.7 17 141-157 25-41 (145)
188 3ber_A Probable ATP-dependent 90.2 6.9 0.00024 34.3 14.0 71 350-424 111-192 (249)
189 3cmu_A Protein RECA, recombina 90.1 0.39 1.3E-05 55.0 6.7 39 141-182 1428-1466(2050)
190 1nlf_A Regulatory protein REPA 90.1 1.4 4.8E-05 39.7 9.4 27 133-161 25-51 (279)
191 2dhr_A FTSH; AAA+ protein, hex 89.0 6.7 0.00023 38.5 13.9 54 99-157 27-81 (499)
192 1xp8_A RECA protein, recombina 88.8 1.2 4.1E-05 41.9 8.2 37 141-180 75-111 (366)
193 2v1x_A ATP-dependent DNA helic 88.5 0.99 3.4E-05 45.7 7.8 125 350-481 84-225 (591)
194 3k1j_A LON protease, ATP-depen 88.4 1.7 5.9E-05 44.1 9.6 21 135-157 57-77 (604)
195 3hjh_A Transcription-repair-co 88.1 2 6.7E-05 42.1 9.4 64 350-425 382-445 (483)
196 2yhs_A FTSY, cell division pro 88.1 0.92 3.2E-05 44.3 6.9 59 246-304 374-435 (503)
197 1xti_A Probable ATP-dependent 87.9 5.3 0.00018 37.6 12.3 96 326-424 49-158 (391)
198 3co5_A Putative two-component 87.6 0.33 1.1E-05 38.8 2.9 16 141-156 28-43 (143)
199 1qde_A EIF4A, translation init 87.4 5.6 0.00019 34.1 11.2 145 326-482 55-212 (224)
200 3jvv_A Twitching mobility prot 87.3 0.54 1.8E-05 44.1 4.7 16 141-156 124-139 (356)
201 2pl3_A Probable ATP-dependent 87.3 4.4 0.00015 35.1 10.5 71 349-424 96-177 (236)
202 1r6b_X CLPA protein; AAA+, N-t 87.1 2.1 7.1E-05 44.9 9.6 18 140-157 207-224 (758)
203 2oxc_A Probable ATP-dependent 87.1 4.6 0.00016 34.9 10.5 70 350-424 92-172 (230)
204 3iuy_A Probable ATP-dependent 86.8 4 0.00014 35.2 9.9 72 349-424 93-173 (228)
205 3pxi_A Negative regulator of g 86.8 2.7 9.3E-05 44.0 10.2 16 142-157 523-538 (758)
206 3io5_A Recombination and repai 86.6 0.68 2.3E-05 42.4 4.7 90 142-260 30-124 (333)
207 1qvr_A CLPB protein; coiled co 86.3 0.83 2.8E-05 48.6 6.0 25 133-157 184-208 (854)
208 2zr9_A Protein RECA, recombina 86.2 0.47 1.6E-05 44.4 3.6 36 141-179 62-97 (349)
209 3hr8_A Protein RECA; alpha and 85.7 0.58 2E-05 43.8 4.0 39 141-182 62-100 (356)
210 3u4q_B ATP-dependent helicase/ 85.4 0.7 2.4E-05 51.1 5.1 39 143-181 4-42 (1166)
211 1gku_B Reverse gyrase, TOP-RG; 85.3 1.9 6.7E-05 46.9 8.3 79 344-424 93-181 (1054)
212 1ls1_A Signal recognition part 85.1 2.9 0.0001 37.9 8.3 17 141-157 99-115 (295)
213 2ffh_A Protein (FFH); SRP54, s 84.9 12 0.00041 35.8 12.8 42 141-185 99-142 (425)
214 1ypw_A Transitional endoplasmi 84.8 2.8 9.6E-05 44.1 9.1 17 141-157 239-255 (806)
215 2zts_A Putative uncharacterize 84.5 0.36 1.2E-05 42.6 1.9 51 141-194 31-81 (251)
216 1p9r_A General secretion pathw 84.4 0.93 3.2E-05 43.5 4.8 16 141-156 168-183 (418)
217 1w36_B RECB, exodeoxyribonucle 83.8 1.6 5.4E-05 48.3 6.9 54 142-195 18-80 (1180)
218 3m6a_A ATP-dependent protease 83.7 1.5 5.1E-05 43.9 6.2 17 141-157 109-125 (543)
219 1jbk_A CLPB protein; beta barr 83.5 0.68 2.3E-05 38.6 3.2 17 141-157 44-60 (195)
220 1wp9_A ATP-dependent RNA helic 83.4 5.4 0.00018 38.7 10.2 93 327-424 28-131 (494)
221 2oap_1 GSPE-2, type II secreti 83.4 0.92 3.1E-05 44.9 4.4 19 136-156 258-276 (511)
222 2rb4_A ATP-dependent RNA helic 83.2 1.3 4.6E-05 36.5 4.8 95 144-253 12-108 (175)
223 2p65_A Hypothetical protein PF 82.9 0.63 2.2E-05 38.6 2.7 17 141-157 44-60 (187)
224 1qvr_A CLPB protein; coiled co 82.8 4.8 0.00016 42.8 9.9 16 142-157 590-605 (854)
225 1e9r_A Conjugal transfer prote 82.7 0.81 2.8E-05 44.4 3.7 42 141-185 54-95 (437)
226 3cf2_A TER ATPase, transitiona 82.2 4.5 0.00015 42.3 9.1 17 141-157 239-255 (806)
227 1wrb_A DJVLGB; RNA helicase, D 82.0 11 0.00038 32.9 10.7 71 350-424 100-180 (253)
228 2gza_A Type IV secretion syste 82.0 1.1 3.9E-05 42.1 4.3 26 136-165 173-198 (361)
229 1yks_A Genome polyprotein [con 81.6 3.6 0.00012 39.9 7.8 69 171-252 177-245 (440)
230 3ly5_A ATP-dependent RNA helic 81.3 12 0.0004 33.1 10.6 72 349-424 125-207 (262)
231 2x8a_A Nuclear valosin-contain 81.0 0.51 1.7E-05 42.6 1.4 54 99-157 6-61 (274)
232 2hjv_A ATP-dependent RNA helic 80.6 1.2 4E-05 36.4 3.4 90 151-255 20-111 (163)
233 3iij_A Coilin-interacting nucl 80.0 0.92 3.1E-05 37.7 2.6 18 141-158 12-29 (180)
234 2v3c_C SRP54, signal recogniti 80.0 3.6 0.00012 39.7 7.1 18 141-158 100-117 (432)
235 1kgd_A CASK, peripheral plasma 79.9 0.88 3E-05 37.9 2.5 17 141-157 6-22 (180)
236 2l82_A Designed protein OR32; 79.6 10 0.00036 27.6 7.6 47 353-399 5-51 (162)
237 2pt7_A CAG-ALFA; ATPase, prote 79.6 1.2 4.3E-05 41.2 3.6 26 137-166 170-195 (330)
238 1s2m_A Putative ATP-dependent 79.1 17 0.00057 34.3 11.6 95 326-424 62-169 (400)
239 2j37_W Signal recognition part 79.1 5.9 0.0002 38.9 8.4 43 141-186 102-146 (504)
240 2bjv_A PSP operon transcriptio 79.0 3.1 0.0001 37.0 6.0 17 141-157 30-46 (265)
241 3hix_A ALR3790 protein; rhodan 79.0 3.4 0.00011 30.7 5.3 39 347-385 49-88 (106)
242 3b85_A Phosphate starvation-in 78.6 1.7 6E-05 37.1 4.0 31 125-157 9-39 (208)
243 2i1q_A DNA repair and recombin 78.5 2.4 8.4E-05 39.0 5.3 54 141-194 99-166 (322)
244 1j8m_F SRP54, signal recogniti 78.1 11 0.00038 34.1 9.5 18 141-158 99-116 (297)
245 1fuu_A Yeast initiation factor 77.9 25 0.00086 32.8 12.5 95 325-424 61-168 (394)
246 3nwn_A Kinesin-like protein KI 77.9 1.1 3.6E-05 42.0 2.6 26 131-156 96-121 (359)
247 3gk5_A Uncharacterized rhodane 77.8 2.1 7.2E-05 32.0 3.8 38 348-385 53-90 (108)
248 2j0s_A ATP-dependent RNA helic 77.8 22 0.00075 33.5 12.1 95 326-424 78-185 (410)
249 2ewv_A Twitching motility prot 77.4 0.89 3E-05 43.0 1.9 16 141-156 137-152 (372)
250 1bg2_A Kinesin; motor protein, 77.4 1.2 4.2E-05 41.0 2.8 27 131-157 69-95 (325)
251 2eyu_A Twitching motility prot 77.1 1.4 4.8E-05 39.3 3.1 19 136-156 23-41 (261)
252 1f9v_A Kinesin-like protein KA 77.1 1.4 4.8E-05 41.0 3.1 27 131-157 76-102 (347)
253 3t0q_A AGR253WP; kinesin, alph 77.0 1.4 4.9E-05 41.0 3.2 27 131-157 77-103 (349)
254 2ius_A DNA translocase FTSK; n 76.9 2.6 8.8E-05 41.5 5.1 18 141-158 168-185 (512)
255 1hv8_A Putative ATP-dependent 76.9 26 0.00088 32.3 12.1 94 326-424 48-153 (367)
256 3cmu_A Protein RECA, recombina 76.9 5.7 0.0002 45.8 8.4 35 141-178 1082-1116(2050)
257 3exa_A TRNA delta(2)-isopenten 76.9 1.2 4E-05 40.8 2.4 18 141-158 4-21 (322)
258 4ag6_A VIRB4 ATPase, type IV s 76.8 1.8 6E-05 41.3 3.9 40 141-183 36-75 (392)
259 3dmn_A Putative DNA helicase; 76.8 29 0.00099 28.3 11.6 88 326-428 37-124 (174)
260 1fuk_A Eukaryotic initiation f 76.8 2 6.9E-05 35.0 3.8 88 153-255 17-106 (165)
261 2qor_A Guanylate kinase; phosp 76.5 1.3 4.3E-05 37.8 2.5 20 136-157 10-29 (204)
262 3vaa_A Shikimate kinase, SK; s 76.3 1.3 4.3E-05 37.6 2.5 17 141-157 26-42 (199)
263 1qhx_A CPT, protein (chloramph 76.3 1.3 4.4E-05 36.6 2.5 17 141-157 4-20 (178)
264 3nbx_X ATPase RAVA; AAA+ ATPas 76.2 2.3 7.8E-05 41.9 4.5 30 126-157 29-58 (500)
265 4etp_A Kinesin-like protein KA 76.1 1.4 4.7E-05 42.0 2.8 27 131-157 132-158 (403)
266 3a8t_A Adenylate isopentenyltr 76.0 1.4 4.9E-05 40.7 2.8 18 141-158 41-58 (339)
267 3lw7_A Adenylate kinase relate 76.0 1.2 4E-05 36.6 2.1 18 141-158 2-19 (179)
268 3eaq_A Heat resistant RNA depe 76.0 1.7 5.8E-05 37.3 3.2 74 170-253 30-105 (212)
269 1t5i_A C_terminal domain of A 76.0 1.6 5.5E-05 36.0 2.9 90 151-255 16-107 (172)
270 2yjt_D ATP-dependent RNA helic 77.8 0.55 1.9E-05 38.8 0.0 75 170-254 29-105 (170)
271 3g5j_A Putative ATP/GTP bindin 75.9 3.9 0.00013 31.7 5.1 36 351-386 90-126 (134)
272 2y65_A Kinesin, kinesin heavy 75.8 1.4 4.8E-05 41.3 2.8 26 131-156 76-101 (365)
273 3foj_A Uncharacterized protein 75.7 2.4 8.3E-05 31.1 3.6 37 349-385 55-91 (100)
274 3foz_A TRNA delta(2)-isopenten 75.7 1.3 4.3E-05 40.5 2.3 18 141-158 11-28 (316)
275 2vvg_A Kinesin-2; motor protei 75.7 1.4 5E-05 41.0 2.8 25 132-156 82-106 (350)
276 1v8k_A Kinesin-like protein KI 75.6 1.3 4.6E-05 42.1 2.6 26 132-157 147-172 (410)
277 2qmh_A HPR kinase/phosphorylas 75.6 1.7 5.7E-05 36.8 2.9 17 141-157 35-51 (205)
278 1goj_A Kinesin, kinesin heavy 75.6 1.5 5.2E-05 40.9 2.9 25 132-156 73-97 (355)
279 1ojl_A Transcriptional regulat 75.5 3.3 0.00011 37.7 5.2 17 141-157 26-42 (304)
280 3uk6_A RUVB-like 2; hexameric 75.5 2.7 9.1E-05 39.5 4.7 18 141-158 71-88 (368)
281 2z43_A DNA repair and recombin 75.5 4.3 0.00015 37.4 6.1 54 141-194 108-165 (324)
282 3trf_A Shikimate kinase, SK; a 75.5 1.3 4.5E-05 36.8 2.3 18 141-158 6-23 (185)
283 2xxa_A Signal recognition part 75.5 16 0.00056 35.0 10.3 44 141-186 101-146 (433)
284 3dc4_A Kinesin-like protein NO 75.3 1.2 4.2E-05 41.3 2.2 26 132-157 87-112 (344)
285 2j41_A Guanylate kinase; GMP, 75.2 1.4 4.8E-05 37.4 2.5 17 141-157 7-23 (207)
286 1q0u_A Bstdead; DEAD protein, 75.1 8 0.00028 32.9 7.4 95 326-424 45-156 (219)
287 1v5w_A DMC1, meiotic recombina 75.1 4.3 0.00015 37.7 6.0 54 141-194 123-180 (343)
288 4a2q_A RIG-I, retinoic acid in 75.1 8 0.00027 40.7 8.7 71 350-424 296-377 (797)
289 3lre_A Kinesin-like protein KI 75.0 1.6 5.4E-05 40.8 2.9 26 131-156 97-122 (355)
290 3dkp_A Probable ATP-dependent 75.0 5.4 0.00018 34.8 6.3 73 349-424 97-181 (245)
291 1zp6_A Hypothetical protein AT 75.0 1.2 4.2E-05 37.2 2.0 16 141-156 10-25 (191)
292 3iwh_A Rhodanese-like domain p 74.8 2.9 9.8E-05 31.1 3.8 37 348-384 54-90 (103)
293 2h58_A Kinesin-like protein KI 74.8 1.6 5.4E-05 40.4 2.8 27 131-157 72-98 (330)
294 3b6u_A Kinesin-like protein KI 74.7 1.5 5E-05 41.3 2.6 26 131-156 93-118 (372)
295 3bfn_A Kinesin-like protein KI 74.6 1.6 5.6E-05 41.1 2.9 26 132-157 91-116 (388)
296 2cvh_A DNA repair and recombin 74.6 2.1 7.3E-05 36.6 3.5 32 141-178 21-52 (220)
297 4a14_A Kinesin, kinesin-like p 74.6 1.6 5.5E-05 40.6 2.8 27 131-157 75-101 (344)
298 2r62_A Cell division protease 74.6 1.5 5E-05 39.2 2.5 17 141-157 45-61 (268)
299 3eme_A Rhodanese-like domain p 74.5 2.5 8.4E-05 31.3 3.4 38 348-385 54-91 (103)
300 2zfi_A Kinesin-like protein KI 74.5 1.6 5.5E-05 41.0 2.8 26 131-156 81-106 (366)
301 2ze6_A Isopentenyl transferase 74.4 1.3 4.5E-05 39.2 2.1 16 142-157 3-18 (253)
302 1kht_A Adenylate kinase; phosp 74.4 1.5 5E-05 36.7 2.3 17 141-157 4-20 (192)
303 3tbk_A RIG-I helicase domain; 74.2 5.4 0.00018 39.6 6.9 71 350-424 52-133 (555)
304 1t5c_A CENP-E protein, centrom 74.2 1.6 5.5E-05 40.7 2.7 27 131-157 69-95 (349)
305 4a2p_A RIG-I, retinoic acid in 74.1 7.3 0.00025 38.7 7.8 71 350-424 55-136 (556)
306 3tau_A Guanylate kinase, GMP k 74.0 2 6.9E-05 36.6 3.1 17 141-157 9-25 (208)
307 1lvg_A Guanylate kinase, GMP k 73.9 1.5 5.1E-05 37.1 2.3 17 141-157 5-21 (198)
308 2nr8_A Kinesin-like protein KI 73.9 1.6 5.4E-05 40.8 2.6 26 131-156 95-120 (358)
309 3tr0_A Guanylate kinase, GMP k 73.7 1.6 5.5E-05 36.9 2.5 17 141-157 8-24 (205)
310 3u06_A Protein claret segregat 73.7 1.6 5.4E-05 41.7 2.6 27 131-157 130-156 (412)
311 3cmw_A Protein RECA, recombina 73.6 1.9 6.6E-05 48.8 3.5 90 141-261 1432-1523(1706)
312 1n0w_A DNA repair protein RAD5 73.6 4.7 0.00016 35.0 5.6 39 141-179 25-66 (243)
313 2db3_A ATP-dependent RNA helic 73.5 13 0.00044 35.7 9.2 71 350-424 129-209 (434)
314 2v9p_A Replication protein E1; 73.3 1.6 5.5E-05 39.8 2.4 16 141-156 127-142 (305)
315 3gbj_A KIF13B protein; kinesin 73.3 1.7 5.7E-05 40.7 2.6 27 131-157 84-110 (354)
316 2heh_A KIF2C protein; kinesin, 73.2 1.6 5.6E-05 41.1 2.5 27 131-157 126-152 (387)
317 1wv9_A Rhodanese homolog TT165 73.1 3.6 0.00012 29.7 4.0 35 351-385 54-88 (94)
318 1u0j_A DNA replication protein 72.9 5.9 0.0002 35.2 5.9 45 110-158 74-122 (267)
319 2p6n_A ATP-dependent RNA helic 72.9 4.1 0.00014 34.2 4.7 87 151-253 40-128 (191)
320 1x88_A Kinesin-like protein KI 72.9 1.6 5.3E-05 40.9 2.3 26 131-156 80-105 (359)
321 2jgn_A DBX, DDX3, ATP-dependen 72.7 3.2 0.00011 34.6 4.0 90 150-253 29-120 (185)
322 1ex7_A Guanylate kinase; subst 72.6 1.8 6.1E-05 36.3 2.4 16 141-156 2-17 (186)
323 3ney_A 55 kDa erythrocyte memb 72.6 2.4 8.2E-05 35.9 3.2 19 137-157 18-36 (197)
324 1ly1_A Polynucleotide kinase; 72.6 1.6 5.5E-05 36.0 2.1 17 141-157 3-19 (181)
325 3cob_A Kinesin heavy chain-lik 72.6 1.5 5E-05 41.2 2.0 27 131-157 71-97 (369)
326 4gp7_A Metallophosphoesterase; 72.6 1.6 5.6E-05 35.9 2.1 18 141-158 10-27 (171)
327 1ofh_A ATP-dependent HSL prote 72.6 4.4 0.00015 36.8 5.3 17 141-157 51-67 (310)
328 2iut_A DNA translocase FTSK; n 72.3 3.5 0.00012 41.1 4.7 23 141-163 215-237 (574)
329 3fmo_B ATP-dependent RNA helic 72.3 11 0.00036 34.2 7.8 119 350-481 162-292 (300)
330 2rep_A Kinesin-like protein KI 72.1 1.9 6.7E-05 40.5 2.7 26 131-156 107-132 (376)
331 3bh0_A DNAB-like replicative h 71.8 6.3 0.00021 36.1 6.1 48 141-192 69-116 (315)
332 1tue_A Replication protein E1; 71.8 2 6.9E-05 36.5 2.5 17 141-157 59-75 (212)
333 3kb2_A SPBC2 prophage-derived 71.7 1.8 6E-05 35.4 2.2 16 142-157 3-18 (173)
334 2wbe_C Bipolar kinesin KRP-130 71.7 1.7 5.7E-05 40.9 2.2 26 131-156 92-117 (373)
335 2zan_A Vacuolar protein sortin 71.7 2 7E-05 41.6 2.9 53 98-157 129-184 (444)
336 1zu4_A FTSY; GTPase, signal re 71.6 20 0.0007 32.7 9.5 17 141-157 106-122 (320)
337 1y63_A LMAJ004144AAA protein; 71.4 2 6.7E-05 35.8 2.4 17 141-157 11-27 (184)
338 1kag_A SKI, shikimate kinase I 71.3 2 6.9E-05 35.2 2.4 17 141-157 5-21 (173)
339 3hws_A ATP-dependent CLP prote 71.3 1.8 6.2E-05 40.7 2.4 17 141-157 52-68 (363)
340 3a00_A Guanylate kinase, GMP k 71.2 2 7E-05 35.8 2.5 16 141-156 2-17 (186)
341 2owm_A Nckin3-434, related to 71.2 2.1 7.2E-05 41.3 2.8 27 131-157 128-154 (443)
342 3tif_A Uncharacterized ABC tra 71.1 2.7 9.3E-05 36.7 3.3 25 141-167 32-56 (235)
343 3eiq_A Eukaryotic initiation f 71.0 29 0.00098 32.7 11.0 73 349-424 107-189 (414)
344 3cm0_A Adenylate kinase; ATP-b 71.0 1.6 5.5E-05 36.3 1.8 18 141-158 5-22 (186)
345 1iy2_A ATP-dependent metallopr 70.9 2.3 7.8E-05 38.2 2.9 54 98-157 35-90 (278)
346 3t15_A Ribulose bisphosphate c 70.7 1.7 5.8E-05 39.5 2.0 17 141-157 37-53 (293)
347 2fsx_A RV0390, COG0607: rhodan 70.5 8.7 0.0003 30.5 6.1 38 348-385 78-116 (148)
348 3crm_A TRNA delta(2)-isopenten 70.4 2.4 8.1E-05 39.0 2.8 18 141-158 6-23 (323)
349 2c9o_A RUVB-like 1; hexameric 70.2 4.4 0.00015 39.4 4.9 17 141-157 64-80 (456)
350 2r44_A Uncharacterized protein 70.1 1.6 5.5E-05 40.4 1.7 20 136-157 44-63 (331)
351 1znw_A Guanylate kinase, GMP k 69.9 2.2 7.6E-05 36.3 2.5 21 134-156 16-36 (207)
352 1nij_A Hypothetical protein YJ 69.8 2.2 7.4E-05 39.3 2.5 35 141-180 5-39 (318)
353 3b6e_A Interferon-induced heli 69.8 8.1 0.00028 32.6 6.1 96 325-424 51-168 (216)
354 3pey_A ATP-dependent RNA helic 69.7 14 0.00049 34.5 8.5 79 170-258 242-322 (395)
355 1z6g_A Guanylate kinase; struc 69.7 2.3 8E-05 36.6 2.5 16 141-156 24-39 (218)
356 1knq_A Gluconate kinase; ALFA/ 69.5 2.2 7.5E-05 35.1 2.3 17 141-157 9-25 (175)
357 2qt1_A Nicotinamide riboside k 69.2 1.9 6.5E-05 36.7 1.9 24 132-157 15-38 (207)
358 1hqc_A RUVB; extended AAA-ATPa 69.2 5 0.00017 36.7 4.9 17 141-157 39-55 (324)
359 1mv5_A LMRA, multidrug resista 69.2 4.1 0.00014 35.7 4.1 25 141-167 29-53 (243)
360 1tev_A UMP-CMP kinase; ploop, 69.1 2.1 7.3E-05 35.7 2.1 17 141-157 4-20 (196)
361 3d3q_A TRNA delta(2)-isopenten 69.0 2.6 8.9E-05 39.0 2.8 18 141-158 8-25 (340)
362 1s96_A Guanylate kinase, GMP k 69.0 2.4 8.2E-05 36.6 2.5 20 136-157 14-33 (219)
363 2i4i_A ATP-dependent RNA helic 68.9 23 0.0008 33.4 9.8 70 351-424 102-181 (417)
364 4g1u_C Hemin import ATP-bindin 68.7 4.5 0.00015 36.1 4.3 25 141-167 38-62 (266)
365 4eun_A Thermoresistant glucoki 68.7 2.4 8.4E-05 35.8 2.5 17 141-157 30-46 (200)
366 3i5x_A ATP-dependent RNA helic 68.4 3.4 0.00012 41.4 3.9 89 161-256 329-419 (563)
367 2r2a_A Uncharacterized protein 68.2 3.3 0.00011 35.1 3.1 22 142-163 7-28 (199)
368 1zuh_A Shikimate kinase; alpha 67.9 2.4 8.2E-05 34.5 2.2 19 141-159 8-26 (168)
369 2ghi_A Transport protein; mult 67.1 4.3 0.00015 36.0 3.8 25 141-167 47-71 (260)
370 3t61_A Gluconokinase; PSI-biol 67.0 2.5 8.5E-05 35.8 2.1 17 141-157 19-35 (202)
371 3l9o_A ATP-dependent RNA helic 66.9 7 0.00024 42.7 6.1 66 348-424 225-296 (1108)
372 1gmx_A GLPE protein; transfera 66.8 8.7 0.0003 28.4 5.0 40 347-386 55-95 (108)
373 3ilm_A ALR3790 protein; rhodan 66.7 7.7 0.00026 30.6 4.9 39 347-385 53-92 (141)
374 2v54_A DTMP kinase, thymidylat 66.6 2.8 9.7E-05 35.3 2.4 17 141-157 5-21 (204)
375 3gfo_A Cobalt import ATP-bindi 66.4 3.8 0.00013 36.8 3.3 25 141-167 35-59 (275)
376 3nwj_A ATSK2; P loop, shikimat 66.3 3.1 0.0001 36.8 2.6 21 135-157 45-65 (250)
377 1tq1_A AT5G66040, senescence-a 66.3 4.9 0.00017 31.1 3.6 40 347-386 79-119 (129)
378 2plr_A DTMP kinase, probable t 66.2 2.7 9.4E-05 35.6 2.3 17 141-157 5-21 (213)
379 4a2w_A RIG-I, retinoic acid in 66.1 12 0.00041 40.2 7.6 95 326-424 267-377 (936)
380 1um8_A ATP-dependent CLP prote 66.0 2.7 9.2E-05 39.7 2.4 17 141-157 73-89 (376)
381 2z0m_A 337AA long hypothetical 65.9 28 0.00097 31.5 9.5 91 326-424 35-135 (337)
382 3pxg_A Negative regulator of g 65.8 3.3 0.00011 40.5 3.0 19 140-158 201-219 (468)
383 3eph_A TRNA isopentenyltransfe 65.7 3.1 0.00011 39.5 2.6 18 141-158 3-20 (409)
384 3d8b_A Fidgetin-like protein 1 65.7 2.7 9.3E-05 39.4 2.3 54 99-157 80-134 (357)
385 1sgw_A Putative ABC transporte 65.7 4.3 0.00015 34.8 3.4 24 141-166 36-59 (214)
386 3b9q_A Chloroplast SRP recepto 65.6 4.7 0.00016 36.7 3.8 35 141-178 101-135 (302)
387 2rhm_A Putative kinase; P-loop 65.5 2.5 8.7E-05 35.2 1.9 17 141-157 6-22 (193)
388 1gvn_B Zeta; postsegregational 65.4 2.7 9.2E-05 38.0 2.1 17 141-157 34-50 (287)
389 3ipz_A Monothiol glutaredoxin- 65.2 25 0.00086 26.0 7.3 46 350-395 17-68 (109)
390 4fcw_A Chaperone protein CLPB; 65.2 2.7 9.2E-05 38.3 2.1 17 141-157 48-64 (311)
391 2qi9_C Vitamin B12 import ATP- 65.0 5 0.00017 35.3 3.8 25 141-167 27-51 (249)
392 1via_A Shikimate kinase; struc 64.9 3.1 0.00011 34.2 2.3 17 141-157 5-21 (175)
393 2ff7_A Alpha-hemolysin translo 64.9 4.2 0.00014 35.8 3.3 24 141-166 36-59 (247)
394 2jtq_A Phage shock protein E; 64.9 16 0.00055 25.4 5.9 37 348-385 39-76 (85)
395 2c95_A Adenylate kinase 1; tra 64.8 3 0.0001 34.9 2.2 17 141-157 10-26 (196)
396 1vee_A Proline-rich protein fa 64.8 16 0.00053 28.4 6.3 38 348-385 72-110 (134)
397 2wv9_A Flavivirin protease NS2 64.7 10 0.00035 38.9 6.5 69 171-252 410-478 (673)
398 1rj9_A FTSY, signal recognitio 64.6 4.2 0.00014 37.1 3.3 35 141-178 103-137 (304)
399 3c8u_A Fructokinase; YP_612366 64.5 3.1 0.00011 35.4 2.3 16 141-156 23-38 (208)
400 2fsf_A Preprotein translocase 64.5 22 0.00077 37.0 8.8 69 350-424 115-200 (853)
401 1ye8_A Protein THEP1, hypothet 64.5 3.1 0.00011 34.5 2.2 15 142-156 2-16 (178)
402 2bdt_A BH3686; alpha-beta prot 64.5 2.5 8.6E-05 35.3 1.6 17 141-157 3-19 (189)
403 3nh6_A ATP-binding cassette SU 64.4 3.5 0.00012 37.6 2.7 25 141-167 81-105 (306)
404 2pcj_A ABC transporter, lipopr 64.3 4.1 0.00014 35.2 3.1 24 141-166 31-54 (224)
405 3uie_A Adenylyl-sulfate kinase 64.3 3.2 0.00011 35.1 2.3 17 141-157 26-42 (200)
406 3fb4_A Adenylate kinase; psych 64.1 3 0.0001 35.6 2.1 17 142-158 2-18 (216)
407 2ehv_A Hypothetical protein PH 64.1 4 0.00014 35.7 3.0 19 141-159 31-49 (251)
408 3flh_A Uncharacterized protein 64.0 4.3 0.00015 31.2 2.8 38 348-385 69-108 (124)
409 4gl2_A Interferon-induced heli 64.0 2.1 7.2E-05 44.3 1.3 70 351-424 57-142 (699)
410 2pze_A Cystic fibrosis transme 63.9 4.6 0.00016 35.0 3.3 24 141-166 35-58 (229)
411 1nks_A Adenylate kinase; therm 63.8 2.9 9.8E-05 34.8 1.9 16 142-157 3-18 (194)
412 1qxn_A SUD, sulfide dehydrogen 63.6 6.2 0.00021 30.9 3.7 38 348-385 80-118 (137)
413 1ukz_A Uridylate kinase; trans 63.6 3.5 0.00012 34.8 2.4 17 141-157 16-32 (203)
414 2cbz_A Multidrug resistance-as 63.6 4.3 0.00015 35.4 3.1 23 141-165 32-54 (237)
415 1e6c_A Shikimate kinase; phosp 63.6 3.4 0.00012 33.7 2.3 17 141-157 3-19 (173)
416 3lnc_A Guanylate kinase, GMP k 63.5 2.4 8.3E-05 36.8 1.4 17 141-157 28-44 (231)
417 1m7g_A Adenylylsulfate kinase; 63.5 4 0.00014 34.8 2.8 21 135-157 22-42 (211)
418 1f2t_A RAD50 ABC-ATPase; DNA d 63.5 3.3 0.00011 33.1 2.1 16 141-156 24-39 (149)
419 1g6h_A High-affinity branched- 63.5 4.6 0.00016 35.7 3.3 24 141-166 34-57 (257)
420 4f4c_A Multidrug resistance pr 63.4 29 0.00099 38.8 10.3 129 135-289 441-610 (1321)
421 1tf5_A Preprotein translocase 63.4 29 0.00099 36.2 9.4 69 350-424 124-209 (844)
422 1u94_A RECA protein, recombina 63.4 5 0.00017 37.5 3.6 36 141-179 64-99 (356)
423 1ji0_A ABC transporter; ATP bi 63.2 4.8 0.00016 35.2 3.3 24 141-166 33-56 (240)
424 3umf_A Adenylate kinase; rossm 63.1 4.4 0.00015 34.8 3.0 19 141-159 30-48 (217)
425 3bgw_A DNAB-like replicative h 63.1 5.1 0.00018 38.8 3.8 36 141-179 198-233 (444)
426 2r8r_A Sensor protein; KDPD, P 63.1 5.2 0.00018 34.5 3.4 21 141-161 7-27 (228)
427 1zd8_A GTP:AMP phosphotransfer 62.9 3 0.0001 36.1 1.9 17 141-157 8-24 (227)
428 1b0u_A Histidine permease; ABC 62.7 4.9 0.00017 35.7 3.3 24 141-166 33-56 (262)
429 2iyv_A Shikimate kinase, SK; t 62.7 3.7 0.00013 34.0 2.4 17 141-157 3-19 (184)
430 1ak2_A Adenylate kinase isoenz 62.7 3.7 0.00013 35.7 2.5 18 141-158 17-34 (233)
431 3dl0_A Adenylate kinase; phosp 62.7 3.3 0.00011 35.4 2.1 17 142-158 2-18 (216)
432 1aky_A Adenylate kinase; ATP:A 62.6 3.7 0.00013 35.2 2.4 18 141-158 5-22 (220)
433 3zyw_A Glutaredoxin-3; metal b 62.6 27 0.00091 26.0 7.0 45 350-394 15-65 (111)
434 3nhv_A BH2092 protein; alpha-b 62.5 6.2 0.00021 31.3 3.5 37 349-385 71-109 (144)
435 1g8p_A Magnesium-chelatase 38 62.4 2.8 9.5E-05 39.0 1.7 17 141-157 46-62 (350)
436 2olj_A Amino acid ABC transpor 62.4 5 0.00017 35.7 3.3 24 141-166 51-74 (263)
437 3sr0_A Adenylate kinase; phosp 62.3 4.4 0.00015 34.5 2.8 18 142-159 2-19 (206)
438 1vpl_A ABC transporter, ATP-bi 62.2 5.1 0.00017 35.5 3.3 24 141-166 42-65 (256)
439 2ixe_A Antigen peptide transpo 61.9 5.2 0.00018 35.8 3.3 24 141-166 46-69 (271)
440 1qf9_A UMP/CMP kinase, protein 61.7 3.3 0.00011 34.4 1.9 17 141-157 7-23 (194)
441 2bwj_A Adenylate kinase 5; pho 61.6 3.3 0.00011 34.7 1.9 17 141-157 13-29 (199)
442 2pez_A Bifunctional 3'-phospho 61.4 3.9 0.00013 33.7 2.3 17 141-157 6-22 (179)
443 2yz2_A Putative ABC transporte 61.3 5.4 0.00018 35.5 3.3 24 141-166 34-57 (266)
444 3qf7_A RAD50; ABC-ATPase, ATPa 61.2 3.5 0.00012 38.8 2.1 17 141-157 24-40 (365)
445 1pzn_A RAD51, DNA repair and r 61.2 6.5 0.00022 36.6 4.0 23 140-162 131-153 (349)
446 2k0z_A Uncharacterized protein 61.0 12 0.00041 27.8 4.8 38 348-385 54-91 (110)
447 2pt5_A Shikimate kinase, SK; a 60.8 3.9 0.00013 33.2 2.1 16 142-157 2-17 (168)
448 2fz4_A DNA repair protein RAD2 60.8 27 0.00093 30.1 7.8 66 327-408 113-179 (237)
449 1in4_A RUVB, holliday junction 60.7 4.8 0.00016 37.2 3.0 17 141-157 52-68 (334)
450 2og2_A Putative signal recogni 60.7 6.4 0.00022 36.8 3.8 35 141-178 158-192 (359)
451 2z83_A Helicase/nucleoside tri 60.6 21 0.00072 34.6 7.7 69 171-252 190-258 (459)
452 2ykg_A Probable ATP-dependent 60.6 15 0.00051 37.8 7.0 70 351-424 62-142 (696)
453 2yvu_A Probable adenylyl-sulfa 60.6 4.1 0.00014 33.8 2.3 17 141-157 14-30 (186)
454 2jaq_A Deoxyguanosine kinase; 60.6 3.8 0.00013 34.4 2.1 16 142-157 2-17 (205)
455 4a74_A DNA repair and recombin 60.5 4.5 0.00015 34.8 2.6 19 141-159 26-44 (231)
456 2ihy_A ABC transporter, ATP-bi 60.3 5.6 0.00019 35.7 3.3 24 141-166 48-71 (279)
457 1zak_A Adenylate kinase; ATP:A 60.3 3.5 0.00012 35.4 1.9 18 141-158 6-23 (222)
458 1ry6_A Internal kinesin; kines 60.3 3.9 0.00013 38.2 2.2 21 137-157 82-102 (360)
459 3asz_A Uridine kinase; cytidin 60.3 3.8 0.00013 34.8 2.0 17 141-157 7-23 (211)
460 3i32_A Heat resistant RNA depe 60.2 2.5 8.6E-05 38.5 0.9 88 151-253 13-102 (300)
461 2nq2_C Hypothetical ABC transp 60.1 5 0.00017 35.4 2.9 24 141-166 32-55 (253)
462 4a1f_A DNAB helicase, replicat 60.1 12 0.0004 34.6 5.4 36 141-179 47-82 (338)
463 3kta_A Chromosome segregation 60.0 3.7 0.00013 33.9 1.9 17 141-157 27-43 (182)
464 2vli_A Antibiotic resistance p 59.9 3.6 0.00012 34.0 1.8 18 141-158 6-23 (183)
465 2pjz_A Hypothetical protein ST 59.9 7 0.00024 34.7 3.8 24 141-166 31-54 (263)
466 1cke_A CK, MSSA, protein (cyti 59.9 3.9 0.00013 35.1 2.1 18 141-158 6-23 (227)
467 2cdn_A Adenylate kinase; phosp 59.5 4.6 0.00016 34.0 2.4 18 141-158 21-38 (201)
468 3a4m_A L-seryl-tRNA(SEC) kinas 59.2 4.1 0.00014 36.2 2.1 17 141-157 5-21 (260)
469 2q5c_A NTRC family transcripti 59.2 42 0.0014 28.0 8.3 123 350-492 4-130 (196)
470 3pxi_A Negative regulator of g 59.2 4.8 0.00017 42.1 3.0 19 140-158 201-219 (758)
471 1jjv_A Dephospho-COA kinase; P 59.0 4.2 0.00014 34.4 2.1 16 142-157 4-19 (206)
472 2pbr_A DTMP kinase, thymidylat 58.9 4.3 0.00015 33.8 2.1 16 142-157 2-17 (195)
473 2hhg_A Hypothetical protein RP 58.6 7 0.00024 30.6 3.2 37 349-385 85-122 (139)
474 1e4v_A Adenylate kinase; trans 58.5 4 0.00014 34.8 1.9 17 142-158 2-18 (214)
475 2z0h_A DTMP kinase, thymidylat 58.3 4.4 0.00015 33.8 2.1 15 143-157 3-17 (197)
476 2bbw_A Adenylate kinase 4, AK4 58.3 4.3 0.00015 35.6 2.1 17 141-157 28-44 (246)
477 2if2_A Dephospho-COA kinase; a 58.3 4.1 0.00014 34.4 1.9 16 142-157 3-18 (204)
478 2wwf_A Thymidilate kinase, put 58.2 4.5 0.00016 34.3 2.2 17 141-157 11-27 (212)
479 3f9v_A Minichromosome maintena 58.1 5.1 0.00018 40.4 2.9 15 142-156 329-343 (595)
480 2xb4_A Adenylate kinase; ATP-b 58.1 4.4 0.00015 34.9 2.1 17 142-158 2-18 (223)
481 3lda_A DNA repair protein RAD5 57.7 8.7 0.0003 36.5 4.2 40 140-179 178-220 (400)
482 2fwr_A DNA repair protein RAD2 57.3 23 0.00078 34.3 7.4 68 325-408 111-179 (472)
483 3d1p_A Putative thiosulfate su 57.3 8.9 0.00031 30.0 3.7 37 349-385 90-127 (139)
484 1htw_A HI0065; nucleotide-bind 57.0 5.3 0.00018 32.3 2.3 16 141-156 34-49 (158)
485 2p6r_A Afuhel308 helicase; pro 56.9 20 0.0007 36.9 7.3 93 325-424 43-144 (702)
486 2xau_A PRE-mRNA-splicing facto 56.8 19 0.00065 37.6 6.9 78 170-253 302-393 (773)
487 2i3b_A HCR-ntpase, human cance 56.7 7.2 0.00025 32.6 3.1 17 141-157 2-18 (189)
488 1g41_A Heat shock protein HSLU 56.6 4.9 0.00017 38.8 2.3 17 141-157 51-67 (444)
489 2zu0_C Probable ATP-dependent 56.5 6.7 0.00023 34.9 3.1 23 141-165 47-69 (267)
490 3aez_A Pantothenate kinase; tr 56.5 5.4 0.00019 36.5 2.5 17 141-157 91-107 (312)
491 1xjc_A MOBB protein homolog; s 56.4 6.6 0.00023 32.2 2.8 16 141-156 5-20 (169)
492 3be4_A Adenylate kinase; malar 56.1 4.9 0.00017 34.4 2.0 17 141-157 6-22 (217)
493 3tlx_A Adenylate kinase 2; str 56.0 5 0.00017 35.1 2.1 18 141-158 30-47 (243)
494 2onk_A Molybdate/tungstate ABC 55.9 7.2 0.00025 34.1 3.1 24 141-166 25-48 (240)
495 2d2e_A SUFC protein; ABC-ATPas 55.8 7.1 0.00024 34.4 3.1 23 141-165 30-52 (250)
496 2p5t_B PEZT; postsegregational 55.8 4.5 0.00015 35.7 1.8 17 141-157 33-49 (253)
497 4h1g_A Maltose binding protein 55.6 5.3 0.00018 41.4 2.6 26 131-156 454-479 (715)
498 1nn5_A Similar to deoxythymidy 55.6 5.4 0.00018 33.8 2.2 17 141-157 10-26 (215)
499 3fht_A ATP-dependent RNA helic 55.5 8.8 0.0003 36.3 4.0 73 171-253 266-340 (412)
500 3e4c_A Caspase-1; zymogen, inf 55.1 23 0.00077 32.1 6.3 47 351-398 61-118 (302)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.3e-64 Score=500.82 Aligned_cols=381 Identities=30% Similarity=0.454 Sum_probs=330.9
Q ss_pred cccCCCCCCCCCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCC
Q 011104 89 VTTGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN 168 (493)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~ 168 (493)
...+..++.+..+|+++++++.+++++.+ +||..|+|+|+++||.++.| +|++++|+||||||++|++|++..+...
T Consensus 45 ~~~~~~~p~~~~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~i~~g--~d~i~~a~TGsGKT~a~~lpil~~l~~~ 121 (434)
T 2db3_A 45 KVTGSDVPQPIQHFTSADLRDIIIDNVNK-SGYKIPTPIQKCSIPVISSG--RDLMACAQTGSGKTAAFLLPILSKLLED 121 (434)
T ss_dssp EEESSSCCCCCCCGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHHHHHHS
T ss_pred EecCCCCCCCcCChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcC--CCEEEECCCCCCchHHHHHHHHHHHHhc
Confidence 34566677788999999999999999987 99999999999999999999 9999999999999999999999887432
Q ss_pred -----CCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCcc
Q 011104 169 -----LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL 243 (493)
Q Consensus 169 -----~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~ 243 (493)
..++++||++||++|+.|+++.+++++...++.+.+.+|+...... ......+++|+|+||++|.+++....+
T Consensus 122 ~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~--~~~l~~~~~Ivv~Tp~~l~~~l~~~~~ 199 (434)
T 2db3_A 122 PHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQ--NECITRGCHVVIATPGRLLDFVDRTFI 199 (434)
T ss_dssp CCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHH--HHHHTTCCSEEEECHHHHHHHHHTTSC
T ss_pred ccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHH--HHHhhcCCCEEEEChHHHHHHHHhCCc
Confidence 3467999999999999999999999998888888888877654321 112234689999999999999998888
Q ss_pred CCCCeeEEEEecchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCce
Q 011104 244 GFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVK 323 (493)
Q Consensus 244 ~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (493)
.+.++++|||||||++++ ++|...+..++..+.. .+..|+++||||+++.+..++..++.++..+.+.........+.
T Consensus 200 ~l~~~~~lVlDEah~~~~-~gf~~~~~~i~~~~~~-~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~ 277 (434)
T 2db3_A 200 TFEDTRFVVLDEADRMLD-MGFSEDMRRIMTHVTM-RPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVK 277 (434)
T ss_dssp CCTTCCEEEEETHHHHTS-TTTHHHHHHHHHCTTS-CSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEE
T ss_pred ccccCCeEEEccHhhhhc-cCcHHHHHHHHHhcCC-CCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccc
Confidence 899999999999999998 5999999998877632 34789999999999999999999999888887777666677788
Q ss_pred EEEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcE
Q 011104 324 QYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQV 403 (493)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~v 403 (493)
+.+..+... .+...+.+.+... ..++||||++++.++.++..|...++.+..+||++++.+|..+++.|++|+.+|
T Consensus 278 ~~~~~~~~~-~k~~~l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~v 353 (434)
T 2db3_A 278 QTIYEVNKY-AKRSKLIEILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 353 (434)
T ss_dssp EEEEECCGG-GHHHHHHHHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSE
T ss_pred eEEEEeCcH-HHHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcE
Confidence 887777644 4555565545443 245999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHhCCCce
Q 011104 404 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVT 483 (493)
Q Consensus 404 Lv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~ 483 (493)
||||+++++|+|+|++++||+||+| .++.+|+||+||+||.|+.|.|++|+++.++..+.+.+.+.+.....
T Consensus 354 LvaT~v~~rGlDi~~v~~VI~~d~p--------~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~ 425 (434)
T 2db3_A 354 LIATSVASRGLDIKNIKHVINYDMP--------SKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQ 425 (434)
T ss_dssp EEECGGGTSSCCCTTCCEEEESSCC--------SSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTC
T ss_pred EEEchhhhCCCCcccCCEEEEECCC--------CCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999 88999999999999999999999999987777788888888877776
Q ss_pred eecCc
Q 011104 484 EVQTC 488 (493)
Q Consensus 484 ~~~~~ 488 (493)
++|..
T Consensus 426 ~vp~~ 430 (434)
T 2db3_A 426 TVPDF 430 (434)
T ss_dssp CCCGG
T ss_pred CCCHH
Confidence 66643
No 2
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.4e-62 Score=495.86 Aligned_cols=387 Identities=40% Similarity=0.708 Sum_probs=177.0
Q ss_pred CCCCCCCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCe
Q 011104 94 TPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQ 173 (493)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~ 173 (493)
.+..+..+|+++++++.+++.+.. +||..|+|+|.++++.++.|.+++++++||||||||++|++|++..+.....+++
T Consensus 86 ~~~~~~~~f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~ 164 (479)
T 3fmp_B 86 SPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ 164 (479)
T ss_dssp SCCCCCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCC
T ss_pred CCccCcCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCc
Confidence 344567799999999999999997 9999999999999999998755899999999999999999999999987777789
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhccc-CceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHc-CccCCCCeeEE
Q 011104 174 ALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA-KKLGFSRLKIL 251 (493)
Q Consensus 174 ~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~i 251 (493)
+|||+||++|+.|+++.++.++... ++.+.+..++..... .....++|+|+||++|++++.+ ..+.+.++++|
T Consensus 165 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~i 239 (479)
T 3fmp_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-----GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 239 (479)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT-----TCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEE
T ss_pred EEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc-----cccCCCCEEEECchHHHHHHHhcCCcCcccCCEE
Confidence 9999999999999999999987654 355555555443221 1233578999999999999866 45677899999
Q ss_pred EEecchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeCCC
Q 011104 252 VYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPD 331 (493)
Q Consensus 252 VlDEah~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (493)
||||||++....+|...+..++..+.. .+|+++||||++..+..+...++..+..+...........+.+.+..+..
T Consensus 240 ViDEah~~~~~~~~~~~~~~i~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 316 (479)
T 3fmp_B 240 VLDEADVMIATQGHQDQSIRIQRMLPR---NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS 316 (479)
T ss_dssp EECCHHHHHTSTTHHHHHHHHHTTSCT---TSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC------------------
T ss_pred EEECHHHHhhcCCcHHHHHHHHhhCCc---cceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCC
Confidence 999999998755777777766655544 78999999999999999999999988888887777777788888888876
Q ss_pred hHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccc
Q 011104 332 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA 411 (493)
Q Consensus 332 ~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 411 (493)
...+...+...+... ..+++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 317 ~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~ 394 (479)
T 3fmp_B 317 RDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCA 394 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccc
Confidence 666666655533322 357899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHhCCCceeecCcccc
Q 011104 412 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVQTCTCE 491 (493)
Q Consensus 412 ~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 491 (493)
+|+|+|++++||+|++|+.... +.+...|+||+||+||.|+.|.|++|+.+.++..+++.|+++++.++++++.+..+
T Consensus 395 ~GlDip~v~~VI~~d~p~~~~~--~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 472 (479)
T 3fmp_B 395 RGIDVEQVSVVINFDLPVDKDG--NPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 472 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCccccCCEEEEecCCCCCcc--CCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCccHH
Confidence 9999999999999999965432 14678999999999999999999999998888999999999999999999988766
Q ss_pred cC
Q 011104 492 TL 493 (493)
Q Consensus 492 ~~ 493 (493)
++
T Consensus 473 ~~ 474 (479)
T 3fmp_B 473 EI 474 (479)
T ss_dssp --
T ss_pred HH
Confidence 53
No 3
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.3e-59 Score=464.41 Aligned_cols=389 Identities=40% Similarity=0.705 Sum_probs=331.9
Q ss_pred CCCCCCCCCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCC
Q 011104 92 GDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKA 171 (493)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~ 171 (493)
...+..+..+|+++++++.+++.+.. +||..|+|+|.++++.++.+.++++++++|||+|||++|++|++..+.....+
T Consensus 17 ~~~~~~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~ 95 (412)
T 3fht_A 17 PNSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKY 95 (412)
T ss_dssp TTSTTCCSSCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCS
T ss_pred CCCCccccCCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCC
Confidence 44555677899999999999999997 99999999999999999987558999999999999999999999998877777
Q ss_pred CeEEEEcCCHHHHHHHHHHHHHHhccc-CceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHc-CccCCCCee
Q 011104 172 PQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA-KKLGFSRLK 249 (493)
Q Consensus 172 ~~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~ 249 (493)
+++||++|+++|+.|+++.+++++... +..+.+..++..... .....++|+|+||++|.+++.. ..+.+.+++
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~ 170 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-----GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIK 170 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT-----TCCCCCSEEEECHHHHHHHHTTSCSSCGGGCC
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh-----hhcCCCCEEEECchHHHHHHHhcCCcChhhCc
Confidence 899999999999999999999987654 455555555443221 2234579999999999999866 556778999
Q ss_pred EEEEecchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeC
Q 011104 250 ILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYC 329 (493)
Q Consensus 250 ~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (493)
+||+||||++....++...+..+...+.. ..|+++||||++..+..+...++..+..+...........+.+.+..+
T Consensus 171 ~iViDEah~~~~~~~~~~~~~~~~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (412)
T 3fht_A 171 VFVLDEADVMIATQGHQDQSIRIQRMLPR---NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLC 247 (412)
T ss_dssp EEEEETHHHHHSTTTTHHHHHHHHHTSCT---TCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEEC
T ss_pred EEEEeCHHHHhhcCCcHHHHHHHHhhCCC---CceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEc
Confidence 99999999998755788777777766654 789999999999999999999999988888877777888899999999
Q ss_pred CChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCc
Q 011104 330 PDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV 409 (493)
Q Consensus 330 ~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 409 (493)
.....+...+...+... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||++
T Consensus 248 ~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 325 (412)
T 3fht_A 248 SSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV 325 (412)
T ss_dssp SSHHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG
T ss_pred CChHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCc
Confidence 88888887777755443 3579999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHhCCCceeecCcc
Q 011104 410 LARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVQTCT 489 (493)
Q Consensus 410 ~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 489 (493)
+++|+|+|++++||+|++|+.... ..+...|+||+||+||.|+.|.|++|+.+.++..+++.+++.++.++++++.+.
T Consensus 326 ~~~Gidip~~~~Vi~~~~p~~~~~--~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 403 (412)
T 3fht_A 326 CARGIDVEQVSVVINFDLPVDKDG--NPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDD 403 (412)
T ss_dssp GTSSCCCTTEEEEEESSCCBCSSS--SBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC----
T ss_pred cccCCCccCCCEEEEECCCCCCCC--CcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCcc
Confidence 999999999999999999964422 136789999999999999999999999888789999999999999999999877
Q ss_pred cccC
Q 011104 490 CETL 493 (493)
Q Consensus 490 ~~~~ 493 (493)
.+++
T Consensus 404 ~~~~ 407 (412)
T 3fht_A 404 LDEI 407 (412)
T ss_dssp ----
T ss_pred HHHH
Confidence 6653
No 4
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2e-60 Score=471.57 Aligned_cols=373 Identities=35% Similarity=0.603 Sum_probs=328.9
Q ss_pred CCCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEE
Q 011104 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (493)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil 177 (493)
...+|+++++++.+++++.. +||..|+|+|.++++.++.| +++++++|||||||++|++|+++.+.....+.++||+
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~--~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil 111 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKG--RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALIL 111 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEE
T ss_pred CCCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCC--CCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEE
Confidence 45689999999999999987 99999999999999999999 9999999999999999999999998766677899999
Q ss_pred cCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecch
Q 011104 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (493)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah 257 (493)
+||++|+.|+++.+.+++...++.+....++...... ......+++|+|+||++|.+++....+.+.++++||+||||
T Consensus 112 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah 189 (410)
T 2j0s_A 112 APTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGED--IRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEAD 189 (410)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHH--HHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred cCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHH--HHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHH
Confidence 9999999999999999998888887777766543221 11112357899999999999999888888999999999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeCCChHHHHH
Q 011104 258 HMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM 337 (493)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (493)
++.. .+|...+..++..++. ..|+++||||++..+..+...++..+..+...........+.+.+..+.....+..
T Consensus 190 ~~~~-~~~~~~~~~i~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 265 (410)
T 2j0s_A 190 EMLN-KGFKEQIYDVYRYLPP---ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFD 265 (410)
T ss_dssp HHTS-TTTHHHHHHHHTTSCT---TCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHH
T ss_pred HHHh-hhhHHHHHHHHHhCcc---CceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHH
Confidence 9997 4888888777766544 78999999999999888888888888877777777777888888888887776777
Q ss_pred HHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCC
Q 011104 338 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ 417 (493)
Q Consensus 338 ~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~ 417 (493)
.+...+.... .+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 266 ~l~~~~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 343 (410)
T 2j0s_A 266 TLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVP 343 (410)
T ss_dssp HHHHHHHHHT--SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCT
T ss_pred HHHHHHHhcC--CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcc
Confidence 7776554432 46999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHhCCCceeecCccc
Q 011104 418 QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVQTCTC 490 (493)
Q Consensus 418 ~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 490 (493)
++++||+|++| .+...|+||+||+||.|+.|.|++|+++ ++...++.++++++.++++++.+..
T Consensus 344 ~v~~Vi~~~~p--------~s~~~~~Qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (410)
T 2j0s_A 344 QVSLIINYDLP--------NNRELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQIDEMPMNVA 407 (410)
T ss_dssp TEEEEEESSCC--------SSHHHHHHHHTTSSGGGCCEEEEEEEEG-GGHHHHHHHHHHTTCCCEECCSCCT
T ss_pred cCCEEEEECCC--------CCHHHHHHhcccccCCCCceEEEEEecH-HHHHHHHHHHHHhCCCceecccchh
Confidence 99999999999 7899999999999999999999999986 5778899999999999999998764
No 5
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=8.5e-59 Score=457.73 Aligned_cols=379 Identities=44% Similarity=0.753 Sum_probs=330.6
Q ss_pred CCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEc
Q 011104 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (493)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 178 (493)
..+|+++++++.+++.+.. +||..|+|+|.++++.++.+.++++++++|||+|||++|++|++..+.....++++||++
T Consensus 4 ~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred ccCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 4689999999999999997 999999999999999999875589999999999999999999999987777788999999
Q ss_pred CCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchh
Q 011104 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (493)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~ 258 (493)
|+++|+.|+++.+++++...++.+....++.... .....++|+|+||++|.+++......+.++++||+||||+
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~ 156 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK------NKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADN 156 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT------TSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchhh------hccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhh
Confidence 9999999999999999887777766666554322 1223579999999999999988888899999999999999
Q ss_pred hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeCCChHHHHHH
Q 011104 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338 (493)
Q Consensus 259 l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (493)
+....++...+..+...++. ..|+++||||+++.+..+...++..+..+...........+.+.+..+.....+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (395)
T 3pey_A 157 MLDQQGLGDQCIRVKRFLPK---DTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDV 233 (395)
T ss_dssp HHHSTTHHHHHHHHHHTSCT---TCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHH
T ss_pred hcCccccHHHHHHHHHhCCC---CcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHH
Confidence 98756777777766666544 789999999999999999999988888887777777778888888888887777777
Q ss_pred HHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCC
Q 011104 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQ 418 (493)
Q Consensus 339 l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~ 418 (493)
+...+. .. ..+++||||+++..++.+++.|+..++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 234 l~~~~~-~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 311 (395)
T 3pey_A 234 LTELYG-LM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPT 311 (395)
T ss_dssp HHHHHT-TT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTT
T ss_pred HHHHHH-hc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCccc
Confidence 665333 22 3589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHhC-CCceeecCcccc
Q 011104 419 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFD-IKVTEVQTCTCE 491 (493)
Q Consensus 419 v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~ 491 (493)
+++||+|++|+.... ..+...|+||+||+||.|+.|.|++|+.+.++..+++.++++++ .++.+++....+
T Consensus 312 ~~~Vi~~~~p~~~~~--~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 383 (395)
T 3pey_A 312 VSMVVNYDLPTLANG--QADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWD 383 (395)
T ss_dssp EEEEEESSCCBCTTS--SBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSCHH
T ss_pred CCEEEEcCCCCCCcC--CCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChHHHH
Confidence 999999999942111 02789999999999999999999999998888999999999999 999988876644
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.4e-59 Score=460.70 Aligned_cols=377 Identities=29% Similarity=0.484 Sum_probs=311.6
Q ss_pred CCCCCCCCCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCC---
Q 011104 92 GDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN--- 168 (493)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~--- 168 (493)
+...+.+..+|+++++++.++++|.. +||..|+|+|.++||.++.| +|++++||||||||++|++|++..+...
T Consensus 7 ~~~~p~~~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~--~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~ 83 (417)
T 2i4i_A 7 GNNCPPHIESFSDVEMGEIIMGNIEL-TRYTRPTPVQKHAIPIIKEK--RDLMACAQTGSGKTAAFLLPILSQIYSDGPG 83 (417)
T ss_dssp STTCCCCCSSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHHHHCCC
T ss_pred CCcCCcccCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccC--CCEEEEcCCCCHHHHHHHHHHHHHHHhcccc
Confidence 44556777889999999999999987 99999999999999999999 9999999999999999999999876422
Q ss_pred ---------------CCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchH
Q 011104 169 ---------------LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGT 233 (493)
Q Consensus 169 ---------------~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~ 233 (493)
..++++||++||++|+.|+++.+++++...++.+...+++...... ......+++|+|+||++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~I~v~Tp~~ 161 (417)
T 2i4i_A 84 EALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQ--IRDLERGCHLLVATPGR 161 (417)
T ss_dssp HHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHH--HHHHTTCCSEEEECHHH
T ss_pred chhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHH--HHHhhCCCCEEEEChHH
Confidence 2346899999999999999999999988878887777776543221 11223357999999999
Q ss_pred HHHHHHcCccCCCCeeEEEEecchhhhcccCCHHHHHHHHHHhhhc-CCCeeEEEEeeecChhHHHHHHHHhccCceeee
Q 011104 234 IKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERS-SGHCQVLLFSATFNETVKNFVTRIVKDYNQLFV 312 (493)
Q Consensus 234 l~~~l~~~~~~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~-~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 312 (493)
|.+++....+.+.++++||+||||++.. .+|...+..++...... ....|+++||||++..+..+...++..+..+..
T Consensus 162 l~~~l~~~~~~~~~~~~iViDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 240 (417)
T 2i4i_A 162 LVDMMERGKIGLDFCKYLVLDEADRMLD-MGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 240 (417)
T ss_dssp HHHHHHTTSBCCTTCCEEEESSHHHHHH-TTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHcCCcChhhCcEEEEEChhHhhc-cCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEe
Confidence 9999998888899999999999999997 48988888877643221 226799999999999999999999888877776
Q ss_pred ccccccccCceEEEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHH
Q 011104 313 KKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKI 392 (493)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~ 392 (493)
.........+.+.+..+... .+...+.+.+. .....+++||||++++.++.++..|...++.+..+||++++.+|..+
T Consensus 241 ~~~~~~~~~i~~~~~~~~~~-~~~~~l~~~l~-~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~ 318 (417)
T 2i4i_A 241 GRVGSTSENITQKVVWVEES-DKRSFLLDLLN-ATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEA 318 (417)
T ss_dssp C----CCSSEEEEEEECCGG-GHHHHHHHHHH-TCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH
T ss_pred CCCCCCccCceEEEEEeccH-hHHHHHHHHHH-hcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHH
Confidence 66666666777777776643 45555555443 34457899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcEEEEeCccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHH
Q 011104 393 VKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIME 472 (493)
Q Consensus 393 ~~~f~~g~~~vLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~ 472 (493)
++.|++|+.+|||||+++++|+|+|++++||+|++| .+...|+||+||+||.|+.|.|++|+++. +...++
T Consensus 319 ~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p--------~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~ 389 (417)
T 2i4i_A 319 LHQFRSGKSPILVATAVAARGLDISNVKHVINFDLP--------SDIEEYVHRIGRTGRVGNLGLATSFFNER-NINITK 389 (417)
T ss_dssp HHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCC--------SSHHHHHHHHTTBCC--CCEEEEEEECGG-GGGGHH
T ss_pred HHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCC--------CCHHHHHHhcCccccCCCCceEEEEEccc-cHHHHH
Confidence 999999999999999999999999999999999999 88999999999999999999999999865 555667
Q ss_pred HHHHHhCCCceee
Q 011104 473 KIERYFDIKVTEV 485 (493)
Q Consensus 473 ~i~~~~~~~~~~~ 485 (493)
.+.+.+.....++
T Consensus 390 ~l~~~~~~~~~~~ 402 (417)
T 2i4i_A 390 DLLDLLVEAKQEV 402 (417)
T ss_dssp HHHHHHHHTTCCC
T ss_pred HHHHHHHHhcCcC
Confidence 7777765444333
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.3e-58 Score=459.40 Aligned_cols=375 Identities=35% Similarity=0.609 Sum_probs=314.0
Q ss_pred CCCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEE
Q 011104 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (493)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil 177 (493)
...+|+++++++.+++.+.. +||..|+++|.++++.++.| +++++++|||||||++|++|+++.+.....+.++||+
T Consensus 38 ~~~~f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil 114 (414)
T 3eiq_A 38 IVDSFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKG--YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVL 114 (414)
T ss_dssp CCCCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTT--CCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred hhcCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHhHHHhCC--CCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEE
Confidence 35689999999999999997 99999999999999999999 9999999999999999999999998776678899999
Q ss_pred cCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecch
Q 011104 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (493)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah 257 (493)
+|+++|+.|+++.++.++...+..+...+++...... ........++|+|+||++|.+++....+.+.++++||+||||
T Consensus 115 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah 193 (414)
T 3eiq_A 115 APTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE-VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 193 (414)
T ss_dssp CSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH-HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHH
T ss_pred eChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH-HHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHH
Confidence 9999999999999999998888777777666543221 111222457999999999999999988888999999999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeCCChHHHHH
Q 011104 258 HMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM 337 (493)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (493)
++.. .+|...+..++..+.. ..|+++||||++..+..+...++..+..+...........+.+.+..+.....+..
T Consensus 194 ~~~~-~~~~~~~~~~~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (414)
T 3eiq_A 194 EMLS-RGFKDQIYDIFQKLNS---NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLD 269 (414)
T ss_dssp HHHH-TTTHHHHHHHHTTSCT---TCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHH
T ss_pred Hhhc-cCcHHHHHHHHHhCCC---CCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHH
Confidence 9987 4888888777766654 78999999999999999888888888888877777788888898888887777777
Q ss_pred HHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCC
Q 011104 338 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ 417 (493)
Q Consensus 338 ~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~ 417 (493)
.+...+... ..+++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|
T Consensus 270 ~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 347 (414)
T 3eiq_A 270 TLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQ 347 (414)
T ss_dssp HHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGG
T ss_pred HHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCcc
Confidence 777644433 357999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHhCCCceeecCcccc
Q 011104 418 QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVQTCTCE 491 (493)
Q Consensus 418 ~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 491 (493)
++++||+|++| .+...|+||+||+||.|+.|.|++|+++. +...++.++++++..+++++.+..+
T Consensus 348 ~v~~Vi~~~~p--------~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (414)
T 3eiq_A 348 QVSLVINYDLP--------TNRENYIHRIGRGGRFGRKGVAINMVTEE-DKRTLRDIETFYNTSIEEMPLNVAD 412 (414)
T ss_dssp GCSCEEESSCC--------SSTHHHHHHSCCC-------CEEEEECST-HHHHHHHHHHHTTCCCEECCC----
T ss_pred CCCEEEEeCCC--------CCHHHhhhhcCcccCCCCCceEEEEEcHH-HHHHHHHHHHHHcCCccccChhhhh
Confidence 99999999999 78899999999999999999999999865 6778899999999999999877543
No 8
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.3e-57 Score=448.61 Aligned_cols=372 Identities=30% Similarity=0.506 Sum_probs=315.8
Q ss_pred CCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcC
Q 011104 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (493)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 179 (493)
.+|+++++++.+++.|.. +||..|+|+|.++++.++.| +++++++|||+|||++|++|++..+.....+.++||++|
T Consensus 8 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 84 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCH 84 (391)
T ss_dssp -CGGGGCCCHHHHHHHHH-HSCCSCCHHHHHHHHHHTTT--CCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECS
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcC--CcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECC
Confidence 579999999999999987 99999999999999999999 999999999999999999999998876666779999999
Q ss_pred CHHHHHHHHHHHHHHhccc-CceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchh
Q 011104 180 TRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (493)
Q Consensus 180 t~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~ 258 (493)
+++|+.|+.+.+.++.... ++.+....++....... .......++|+|+||++|..++....+.+.++++||+||||+
T Consensus 85 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~ 163 (391)
T 1xti_A 85 TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE-EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK 163 (391)
T ss_dssp CHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHH-HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHH-HHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHH
Confidence 9999999999999997765 56666666654322111 001112368999999999999988888889999999999999
Q ss_pred hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeecccc-ccccCceEEEEeCCChHHHHH
Q 011104 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEE-LSLESVKQYKVYCPDELAKVM 337 (493)
Q Consensus 259 l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 337 (493)
+....++...+..++...+. ..|+++||||+++.+...+..++..+..+...... .....+.+++..+.. ..+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 239 (391)
T 1xti_A 164 MLEQLDMRRDVQEIFRMTPH---EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD-NEKNR 239 (391)
T ss_dssp HTSSHHHHHHHHHHHHTSCS---SSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCG-GGHHH
T ss_pred HhhccchHHHHHHHHhhCCC---CceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCc-hhHHH
Confidence 98754666666666555443 78999999999999999899998888777655433 334556666666654 34555
Q ss_pred HHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCC
Q 011104 338 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ 417 (493)
Q Consensus 338 ~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~ 417 (493)
.+...+... ..+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 240 ~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~ 317 (391)
T 1xti_A 240 KLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIE 317 (391)
T ss_dssp HHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCT
T ss_pred HHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcc
Confidence 555544433 468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHhCCCceeecCcc
Q 011104 418 QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVQTCT 489 (493)
Q Consensus 418 ~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 489 (493)
++++||+|++| .+...|+||+||+||.|+.|.|++|+++.++..+++.+++.++.++++++...
T Consensus 318 ~~~~Vi~~~~p--------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (391)
T 1xti_A 318 RVNIAFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 381 (391)
T ss_dssp TEEEEEESSCC--------SSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCC
T ss_pred cCCEEEEeCCC--------CCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCccc
Confidence 99999999999 78999999999999999999999999988888899999999999999998653
No 9
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4.4e-57 Score=446.10 Aligned_cols=372 Identities=35% Similarity=0.584 Sum_probs=313.7
Q ss_pred CCCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEE
Q 011104 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (493)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil 177 (493)
...+|+++++++.++++|.. +||..|+|+|.++++.++.| +++++++|||+|||++|++|++..+.....+.++||+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~--~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil 95 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFE-AGFEKPSPIQEEAIPVAITG--RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIM 95 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHT--CCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred ccCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcC--CCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEE
Confidence 45689999999999999997 99999999999999999999 8999999999999999999999988766677799999
Q ss_pred cCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecch
Q 011104 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (493)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah 257 (493)
+|+++|+.|+++.+++++...++.+....++...... .......++|+|+||++|.+++......+.++++||+||||
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 173 (400)
T 1s2m_A 96 VPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDD--ILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD 173 (400)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHH--HHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH
T ss_pred cCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHH--HHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch
Confidence 9999999999999999988878877777665543221 11223467999999999999998877788999999999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeCCChHHHHH
Q 011104 258 HMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM 337 (493)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (493)
++... +|...+..++..++. ..|+++||||++..+..++...+..+..+.... ......+.+++..+.. ..+..
T Consensus 174 ~~~~~-~~~~~~~~i~~~~~~---~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~k~~ 247 (400)
T 1s2m_A 174 KMLSR-DFKTIIEQILSFLPP---THQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYAFVEE-RQKLH 247 (400)
T ss_dssp HHSSH-HHHHHHHHHHTTSCS---SCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEEEECCG-GGHHH
T ss_pred Hhhhh-chHHHHHHHHHhCCc---CceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEEEEech-hhHHH
Confidence 98873 566666555554433 689999999999999988888887776554433 2344556666666553 34555
Q ss_pred HHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCC
Q 011104 338 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ 417 (493)
Q Consensus 338 ~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~ 417 (493)
.+...+... ..+++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 248 ~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip 325 (400)
T 1s2m_A 248 CLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQ 325 (400)
T ss_dssp HHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCT
T ss_pred HHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCcc
Confidence 555533332 357999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHhCCCceeecCcccc
Q 011104 418 QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVQTCTCE 491 (493)
Q Consensus 418 ~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 491 (493)
++++||+|++| .+...|+||+||+||.|+.|.|++|+++. +...++.+++.++.++++++....+
T Consensus 326 ~~~~Vi~~~~p--------~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~ 390 (400)
T 1s2m_A 326 AVNVVINFDFP--------KTAETYLHRIGRSGRFGHLGLAINLINWN-DRFNLYKIEQELGTEIAAIPATIDK 390 (400)
T ss_dssp TEEEEEESSCC--------SSHHHHHHHHCBSSCTTCCEEEEEEECGG-GHHHHHHHHHHHTCCCEECCSSCCG
T ss_pred CCCEEEEeCCC--------CCHHHHHHhcchhcCCCCCceEEEEeccc-hHHHHHHHHHHhCCCcccccccccc
Confidence 99999999999 78999999999999999999999999865 6778999999999999999876543
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=5.7e-58 Score=451.67 Aligned_cols=372 Identities=36% Similarity=0.605 Sum_probs=179.0
Q ss_pred CCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEc
Q 011104 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (493)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 178 (493)
..+|+++++++.+++.+.. +||..|+|+|.++++.++.| +++++++|||+|||++|++|++..+.....++++||++
T Consensus 20 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~--~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~ 96 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEG--HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA 96 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHT--CCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred cCChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCC--CCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEc
Confidence 5679999999999999987 99999999999999999999 99999999999999999999999987777788999999
Q ss_pred CCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchh
Q 011104 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (493)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~ 258 (493)
|+++|+.|+++.+.++....++.+....++......... ...++|+|+||++|.+.+....+.+.++++||+||||+
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~ 173 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 173 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHH---HHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhh---cCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHH
Confidence 999999999999999988888888777776543221110 01468999999999999988888889999999999999
Q ss_pred hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeCCChHHHHHH
Q 011104 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338 (493)
Q Consensus 259 l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (493)
+.. .+|...+..++..++. ..|+++||||+++.+......++..+..+...........+.+.+..+.....+...
T Consensus 174 ~~~-~~~~~~~~~~~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (394)
T 1fuu_A 174 MLS-SGFKEQIYQIFTLLPP---TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYEC 249 (394)
T ss_dssp HHH-TTCHHHHHHHHHHSCT---TCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------
T ss_pred hhC-CCcHHHHHHHHHhCCC---CceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHH
Confidence 987 4788888888777655 789999999999999888888988888877766666666666766666655445555
Q ss_pred HHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCC
Q 011104 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQ 418 (493)
Q Consensus 339 l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~ 418 (493)
+...+... ..+++||||++++.++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 250 l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~ 327 (394)
T 1fuu_A 250 LTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQ 327 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCccc
Confidence 54433222 3578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHhCCCceeecCcccc
Q 011104 419 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVQTCTCE 491 (493)
Q Consensus 419 v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 491 (493)
+++||+|++| .+...|+||+||+||.|+.|.|++|+++. +...++.++++++.++++++....+
T Consensus 328 ~~~Vi~~~~p--------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~ 391 (394)
T 1fuu_A 328 VSLVINYDLP--------ANKENYIHRIGRGGRFGRKGVAINFVTNE-DVGAMRELEKFYSTQIEELPSDIAT 391 (394)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CCEEEEeCCC--------CCHHHHHHHcCcccCCCCCceEEEEEchh-HHHHHHHHHHHhCCcccccCcchhh
Confidence 9999999999 78889999999999999999999999765 6778899999999999999876554
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.2e-56 Score=458.72 Aligned_cols=368 Identities=26% Similarity=0.391 Sum_probs=297.2
Q ss_pred CCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCC----CCCCeEEEEcCCHH
Q 011104 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN----LKAPQALCICPTRE 182 (493)
Q Consensus 107 ~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~----~~~~~~lil~Pt~~ 182 (493)
+++++++.+.. +||..|+|+|.++|+.++.+.+++++++||||+|||++|++|+++.+... ..++++|||+||++
T Consensus 28 l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 28 LDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SCHHHHHHHHT-TTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHH-CCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHH
Confidence 99999999986 99999999999999999943239999999999999999999999887432 23568999999999
Q ss_pred HHHHHHHHHHHHhcc----cCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcC-ccCCCCeeEEEEecch
Q 011104 183 LAIQNLEVLRKMGKH----TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-KLGFSRLKILVYDEAD 257 (493)
Q Consensus 183 La~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~~iVlDEah 257 (493)
|+.|+++.+.++... ....+....++..... ........+++|+|+||++|.+++... ...+..+++|||||||
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~-~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 185 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA-AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD 185 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH-HHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHH-HHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChH
Confidence 999999999998632 2344445555443221 111111224789999999999988764 3457889999999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcC----CCeeEEEEeeecChhHHHHHHHHhccCceeeecc----ccccccCceEEEEeC
Q 011104 258 HMLDEAGFRDDSLRIMKDIERSS----GHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKK----EELSLESVKQYKVYC 329 (493)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~~~~~~----~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 329 (493)
++++ .+|...+..++..+.... +.+|+++||||+++.+..++..++..+..+.... .......+.+.+...
T Consensus 186 ~l~~-~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 264 (579)
T 3sqw_A 186 RLLE-IGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 264 (579)
T ss_dssp HHTS-TTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred Hhhc-CCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEe
Confidence 9998 589999999988876543 3679999999999999988888888776665433 222334556666666
Q ss_pred CChHHHHHHHHHHHHH---hcccCCcEEEEcCChhhHHHHHHHHHhC---CCcEEEecCCCCHHHHHHHHHHHHcCCCcE
Q 011104 330 PDELAKVMVIRDRIFE---LGEKMGQTIIFVRTKNSASALHKALKDF---GYEVTTIMGATIQEERDKIVKEFKDGLTQV 403 (493)
Q Consensus 330 ~~~~~~~~~l~~~l~~---~~~~~~~~lVf~~s~~~~~~l~~~L~~~---~~~~~~l~~~~~~~~r~~~~~~f~~g~~~v 403 (493)
.........+...+.. ......++||||+++..++.++..|... ++.+..+||+|++.+|..+++.|++|+..|
T Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~v 344 (579)
T 3sqw_A 265 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGI 344 (579)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEE
T ss_pred cchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeE
Confidence 5543333222222222 2234679999999999999999999887 899999999999999999999999999999
Q ss_pred EEEeCccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHhCCCce
Q 011104 404 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVT 483 (493)
Q Consensus 404 Lv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~ 483 (493)
||||+++++|||+|++++||+|++| .++..|+||+||+||.|+.|.|++|+++ ++..+++.+++..+..+.
T Consensus 345 LVaT~~~~~GiDip~v~~VI~~~~p--------~s~~~y~Qr~GRagR~g~~g~~i~~~~~-~e~~~~~~l~~~~~~~~~ 415 (579)
T 3sqw_A 345 LVCTDVGARGMDFPNVHEVLQIGVP--------SELANYIHRIGRTARSGKEGSSVLFICK-DELPFVRELEDAKNIVIA 415 (579)
T ss_dssp EEECGGGTSSCCCTTCCEEEEESCC--------SSTTHHHHHHTTSSCTTCCEEEEEEEEG-GGHHHHHHHHHHHCCCCC
T ss_pred EEEcchhhcCCCcccCCEEEEcCCC--------CCHHHhhhhccccccCCCCceEEEEEcc-cHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999 7899999999999999999999999986 477889999999888887
Q ss_pred eec
Q 011104 484 EVQ 486 (493)
Q Consensus 484 ~~~ 486 (493)
...
T Consensus 416 ~~~ 418 (579)
T 3sqw_A 416 KQE 418 (579)
T ss_dssp EEE
T ss_pred ccc
Confidence 654
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.4e-55 Score=454.04 Aligned_cols=368 Identities=26% Similarity=0.382 Sum_probs=296.5
Q ss_pred CCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCC----CCCeEEEEcCCHH
Q 011104 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL----KAPQALCICPTRE 182 (493)
Q Consensus 107 ~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~----~~~~~lil~Pt~~ 182 (493)
+++.+++.+.. +||..|+|+|.++|+.++.+.++|++++||||||||++|++|+++.+.... .++++|||+||++
T Consensus 79 l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHT-TCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 99999999986 999999999999999999433389999999999999999999998874322 3468999999999
Q ss_pred HHHHHHHHHHHHhcc----cCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcC-ccCCCCeeEEEEecch
Q 011104 183 LAIQNLEVLRKMGKH----TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-KLGFSRLKILVYDEAD 257 (493)
Q Consensus 183 La~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~~iVlDEah 257 (493)
|+.|+++.++++... ....+....++..... ........+++|+|+||++|.+++.+. ...+.++++|||||||
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah 236 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA-AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEAD 236 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH-HHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH-HHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHH
Confidence 999999999987542 1234444555433211 111111225799999999999988764 3357889999999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcC----CCeeEEEEeeecChhHHHHHHHHhccCceeeeccc----cccccCceEEEEeC
Q 011104 258 HMLDEAGFRDDSLRIMKDIERSS----GHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKE----ELSLESVKQYKVYC 329 (493)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~~~~~~----~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 329 (493)
++.+ .+|...+..++..+.... +.+|+++||||+++.+..++..++..+..+..... ......+.+.+...
T Consensus 237 ~l~~-~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (563)
T 3i5x_A 237 RLLE-IGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 315 (563)
T ss_dssp HHTS-TTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred HHhc-cchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEEC
Confidence 9998 589999999888876533 36799999999999998888888887766654322 22334556666666
Q ss_pred CChHHHHHHHHHHHHH---hcccCCcEEEEcCChhhHHHHHHHHHhC---CCcEEEecCCCCHHHHHHHHHHHHcCCCcE
Q 011104 330 PDELAKVMVIRDRIFE---LGEKMGQTIIFVRTKNSASALHKALKDF---GYEVTTIMGATIQEERDKIVKEFKDGLTQV 403 (493)
Q Consensus 330 ~~~~~~~~~l~~~l~~---~~~~~~~~lVf~~s~~~~~~l~~~L~~~---~~~~~~l~~~~~~~~r~~~~~~f~~g~~~v 403 (493)
.............+.. ......++||||+++..++.++..|... ++.+..+||+|++.+|..+++.|++|+..|
T Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~v 395 (563)
T 3i5x_A 316 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGI 395 (563)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEE
T ss_pred chhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCE
Confidence 5543333332222222 2244679999999999999999999886 899999999999999999999999999999
Q ss_pred EEEeCccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHhCCCce
Q 011104 404 LISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVT 483 (493)
Q Consensus 404 Lv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~ 483 (493)
||||+++++|||+|++++||+|++| .++..|+||+||+||.|+.|.|++|+++. +..+++.+++..+..++
T Consensus 396 LvaT~~~~~GiDip~v~~VI~~~~p--------~s~~~y~Qr~GRagR~g~~g~~i~~~~~~-e~~~~~~l~~~~~~~~~ 466 (563)
T 3i5x_A 396 LVCTDVGARGMDFPNVHEVLQIGVP--------SELANYIHRIGRTARSGKEGSSVLFICKD-ELPFVRELEDAKNIVIA 466 (563)
T ss_dssp EEECGGGTSSCCCTTCCEEEEESCC--------SSTTHHHHHHTTSSCTTCCEEEEEEEEGG-GHHHHHHHHHHHCCCCC
T ss_pred EEEcchhhcCCCcccCCEEEEECCC--------CchhhhhhhcCccccCCCCceEEEEEchh-HHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999 78999999999999999999999999864 67889999999888887
Q ss_pred eec
Q 011104 484 EVQ 486 (493)
Q Consensus 484 ~~~ 486 (493)
...
T Consensus 467 ~~~ 469 (563)
T 3i5x_A 467 KQE 469 (563)
T ss_dssp EEE
T ss_pred ccc
Confidence 654
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.7e-54 Score=421.26 Aligned_cols=361 Identities=30% Similarity=0.512 Sum_probs=305.1
Q ss_pred CCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEc
Q 011104 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (493)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 178 (493)
..+|+++++++.+++.|.+ +||..|+|+|.++++.++.|. +++++.+|||+|||++|++|++..+... .+.++||++
T Consensus 5 ~~~f~~~~l~~~~~~~l~~-~g~~~~~~~Q~~~i~~~~~~~-~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~ 81 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDE-YNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILT 81 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTC-SEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEEC
T ss_pred cCchhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCC-CCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEc
Confidence 4579999999999999987 999999999999999999873 6999999999999999999999877543 567899999
Q ss_pred CCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchh
Q 011104 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (493)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~ 258 (493)
|+++|+.|+++.+..+....++.+....++......... ...++|+|+||++|.+++......+.++++||+||||+
T Consensus 82 P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 82 PTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKA---LKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE 158 (367)
T ss_dssp SCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHH---HHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhh---cCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchH
Confidence 999999999999999988777777766665533211100 11478999999999999988888889999999999999
Q ss_pred hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeCCChHHHHHH
Q 011104 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338 (493)
Q Consensus 259 l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (493)
+.. .+|...+..++..+.. ..++++||||++.........++..+..+.... ...+.+.+..+.. ..+...
T Consensus 159 ~~~-~~~~~~~~~~~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~ 229 (367)
T 1hv8_A 159 MLN-MGFIKDVEKILNACNK---DKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNE-NERFEA 229 (367)
T ss_dssp HHT-TTTHHHHHHHHHTSCS---SCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCG-GGHHHH
T ss_pred hhh-hchHHHHHHHHHhCCC---CceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeCh-HHHHHH
Confidence 987 4787777777666544 789999999999998888888877765544322 2345555555543 345555
Q ss_pred HHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCC
Q 011104 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQ 418 (493)
Q Consensus 339 l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~ 418 (493)
+...+. ....++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 230 l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~ 306 (367)
T 1hv8_A 230 LCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVND 306 (367)
T ss_dssp HHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSC
T ss_pred HHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCccc
Confidence 544332 45689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHhCCCceeec
Q 011104 419 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVQ 486 (493)
Q Consensus 419 v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~~~~ 486 (493)
+++||++++| .+...|+||+||+||.|+.|.|++++++ .+...++.|++.++.++++++
T Consensus 307 ~~~Vi~~~~~--------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 307 LNCVINYHLP--------QNPESYMHRIGRTGRAGKKGKAISIINR-REYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp CSEEEESSCC--------SCHHHHHHHSTTTCCSSSCCEEEEEECT-TSHHHHHHHHHHHTCCCCCBC
T ss_pred CCEEEEecCC--------CCHHHhhhcccccccCCCccEEEEEEcH-HHHHHHHHHHHHhCCCCceec
Confidence 9999999999 7899999999999999999999999976 477789999999999998875
No 14
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-55 Score=445.68 Aligned_cols=380 Identities=38% Similarity=0.629 Sum_probs=273.3
Q ss_pred CCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEc
Q 011104 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (493)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 178 (493)
...|...++++.+++.+.. .||..|+++|.++++.++.|.++++++++|||||||++|+++++..+.....++++||++
T Consensus 118 l~~~~~~~l~~~~~~~l~~-~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~ 196 (508)
T 3fho_A 118 XXXXXXXXXXXXXXXXXXX-XXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLA 196 (508)
T ss_dssp ----------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEEC
T ss_pred ccccccccccccccccccc-ccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 3446667889999999987 899999999999999999874489999999999999999999999988777778999999
Q ss_pred CCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchh
Q 011104 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (493)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~ 258 (493)
|+++|+.|+++.+++++...++......++.... .....++|+|+||++|.+++....+.+.++++||+||||+
T Consensus 197 P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~ 270 (508)
T 3fho_A 197 PSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK------GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADN 270 (508)
T ss_dssp SCHHHHHHHHHHHHHHSTTSSCCEEC----------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHH
T ss_pred CcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc------cccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhh
Confidence 9999999999999999876665554444332211 1122579999999999999998888899999999999999
Q ss_pred hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeCCChHHHHHH
Q 011104 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338 (493)
Q Consensus 259 l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (493)
+....++...+..++..+.. ..|+++||||+++.+..+...+...+..+...........+.+.+..+.....+...
T Consensus 271 ~~~~~~~~~~~~~i~~~~~~---~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 347 (508)
T 3fho_A 271 MLDQQGLGDQSMRIKHLLPR---NTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNV 347 (508)
T ss_dssp HTTC--CHHHHHHHHHHSCT---TCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHH
T ss_pred hcccCCcHHHHHHHHHhCCc---CCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHH
Confidence 98756788888888777765 789999999999999999999988888877777677777777777877766666666
Q ss_pred HHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCC
Q 011104 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQ 418 (493)
Q Consensus 339 l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~ 418 (493)
+...+... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 348 l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~ 425 (508)
T 3fho_A 348 LVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQ 425 (508)
T ss_dssp HHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTT
T ss_pred HHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccC
Confidence 66533322 3589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHhCCCceeecCccccc
Q 011104 419 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVQTCTCET 492 (493)
Q Consensus 419 v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 492 (493)
+++||++++|+..... .++..|+||+||+||.|+.|.|++|+.+.++...++.++++++.++++++....++
T Consensus 426 v~~VI~~~~p~~~~~~--~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~ 497 (508)
T 3fho_A 426 VNLVVNYDMPLDQAGR--PDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDYEE 497 (508)
T ss_dssp CCEEEC----CC-------CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC---------
T ss_pred CCEEEEECCCCcccCC--CCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCccHHH
Confidence 9999999999543221 46889999999999999999999999988888889999999999999999876654
No 15
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.5e-52 Score=400.67 Aligned_cols=336 Identities=27% Similarity=0.471 Sum_probs=278.0
Q ss_pred CCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHH
Q 011104 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQ 186 (493)
Q Consensus 107 ~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q 186 (493)
+++.+.+.+.. +||..|+|+|.++++.++.| +++++.+|||+|||++|++|++.. +.++||++|+++|+.|
T Consensus 1 l~~~i~~~l~~-~g~~~l~~~Q~~~i~~i~~~--~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q 71 (337)
T 2z0m_A 1 MNEKIEQAIRE-MGFKNFTEVQSKTIPLMLQG--KNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQ 71 (337)
T ss_dssp CCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcC--CCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHH
Confidence 57889999987 99999999999999999998 899999999999999999999864 5689999999999999
Q ss_pred HHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhcccCCH
Q 011104 187 NLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFR 266 (493)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~~~~~ 266 (493)
+++.+++++...+..+....++......... ...++|+|+||++|.+++....+.+.++++||+||||++.. .++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~-~~~~ 147 (337)
T 2z0m_A 72 VASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFE-MGFI 147 (337)
T ss_dssp HHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHH-TTCH
T ss_pred HHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhc-cccH
Confidence 9999999988777777777665433211100 11378999999999999988877889999999999999987 4788
Q ss_pred HHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeCCChHHHHHHHHHHHHHh
Q 011104 267 DDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFEL 346 (493)
Q Consensus 267 ~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 346 (493)
..+..++..+.. ..++++||||++..+...+..++..+..+... .....+.+.+..+........ ..+.
T Consensus 148 ~~~~~~~~~~~~---~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~-- 216 (337)
T 2z0m_A 148 DDIKIILAQTSN---RKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWRSKV---QALR-- 216 (337)
T ss_dssp HHHHHHHHHCTT---CSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSHHHH---HHHH--
T ss_pred HHHHHHHhhCCc---ccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHHHHH---HHHH--
Confidence 888877776654 67899999999999988888888877665332 233445566666554433221 2122
Q ss_pred cccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCCCCEEEEcc
Q 011104 347 GEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYD 426 (493)
Q Consensus 347 ~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~v~~Vi~~~ 426 (493)
....+++||||++++.++.+++.|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+|+
T Consensus 217 ~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~ 292 (337)
T 2z0m_A 217 ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFD 292 (337)
T ss_dssp TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESS
T ss_pred hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEec
Confidence 2346899999999999999998886 689999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHhCC
Q 011104 427 PPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDI 480 (493)
Q Consensus 427 ~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~~~ 480 (493)
+| .|+..|+||+||+||.|+.|.|++|+. .+..+++.+++.++.
T Consensus 293 ~~--------~s~~~~~Q~~GR~gR~g~~g~~~~~~~--~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 293 AP--------QDLRTYIHRIGRTGRMGRKGEAITFIL--NEYWLEKEVKKVSQK 336 (337)
T ss_dssp CC--------SSHHHHHHHHTTBCGGGCCEEEEEEES--SCHHHHHHHC-----
T ss_pred CC--------CCHHHhhHhcCccccCCCCceEEEEEe--CcHHHHHHHHHHhcc
Confidence 99 789999999999999999999999998 577788888887764
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=8.4e-52 Score=421.74 Aligned_cols=341 Identities=19% Similarity=0.229 Sum_probs=267.0
Q ss_pred CcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCC
Q 011104 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (493)
Q Consensus 101 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 180 (493)
.+.++++++.+.+.|...+||..|+|+|.++|+.++.| +|+++.+|||+|||++|++|++.. .+++|||+|+
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g--~d~lv~~pTGsGKTl~~~lpal~~------~g~~lVisP~ 93 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAG--KEVFLVMPTGGGKSLCYQLPALCS------DGFTLVICPL 93 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTT--CCEEEECCTTSCTTHHHHHHHHTS------SSEEEEECSC
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcC--CCEEEEECCCChHHHHHHHHHHHc------CCcEEEEeCH
Confidence 34568899999999998789999999999999999999 999999999999999999999853 4589999999
Q ss_pred HHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccc----cCCCCCCCcEEEeCchHHH------HHHHcCccCCCCeeE
Q 011104 181 RELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPI----SKRPPVTAQVVIGTPGTIK------KWMSAKKLGFSRLKI 250 (493)
Q Consensus 181 ~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Ilv~Tp~~l~------~~l~~~~~~~~~~~~ 250 (493)
++|+.|+.+.+..+ ++.+..+.++........ .......++|+|+||++|. +++.. ...+.++++
T Consensus 94 ~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~ 168 (591)
T 2v1x_A 94 ISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTR 168 (591)
T ss_dssp HHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEE
T ss_pred HHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcE
Confidence 99999999999887 455555555443221110 0012346899999999874 23332 334678999
Q ss_pred EEEecchhhhcccC--CHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEe
Q 011104 251 LVYDEADHMLDEAG--FRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVY 328 (493)
Q Consensus 251 iVlDEah~l~~~~~--~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (493)
|||||||++..+ | |++.+..+ ..+....+..++++||||+++.+...+..++..+....... ......+......
T Consensus 169 iViDEAH~is~~-g~dfr~~~~~l-~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~ 245 (591)
T 2v1x_A 169 IAVDEVHCCSQW-GHDFRPDYKAL-GILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVRQ 245 (591)
T ss_dssp EEEETGGGGSTT-CTTCCGGGGGG-GHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEEE
T ss_pred EEEECccccccc-ccccHHHHHHH-HHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEEe
Confidence 999999999874 4 76665442 22223334789999999999998888887776654433332 2222333333333
Q ss_pred CCC-hHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEe
Q 011104 329 CPD-ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIST 407 (493)
Q Consensus 329 ~~~-~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T 407 (493)
... ...+...+.+.+... ..++++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|+.|+..|||||
T Consensus 246 ~~~~~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT 324 (591)
T 2v1x_A 246 KPSNTEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 324 (591)
T ss_dssp CCSSHHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEEC
T ss_pred CCCcHHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 222 233444454433222 246899999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCc
Q 011104 408 DVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466 (493)
Q Consensus 408 ~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~ 466 (493)
+++++|||+|++++||+|++| .|++.|+||+||+||.|.+|.|++|+.+.+
T Consensus 325 ~a~~~GID~p~V~~VI~~~~p--------~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D 375 (591)
T 2v1x_A 325 VAFGMGIDKPDVRFVIHHSMS--------KSMENYYQESGRAGRDDMKADCILYYGFGD 375 (591)
T ss_dssp TTSCTTCCCSCEEEEEESSCC--------SSHHHHHHHHTTSCTTSSCEEEEEEECHHH
T ss_pred chhhcCCCcccccEEEEeCCC--------CCHHHHHHHhccCCcCCCCceEEEEEChHH
Confidence 999999999999999999999 899999999999999999999999997653
No 17
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-51 Score=444.42 Aligned_cols=348 Identities=13% Similarity=0.169 Sum_probs=268.2
Q ss_pred CCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcC
Q 011104 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (493)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 179 (493)
..|..+++++.+...+.. .++..|+|+|.++|+.++.| ++++++||||||||++|++|++..+. .+.++||++|
T Consensus 162 ~~~~~~~l~~~~~~~~~~-~~~f~ltp~Q~~AI~~i~~g--~dvLV~ApTGSGKTlva~l~i~~~l~---~g~rvlvl~P 235 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEAR-TYPFTLDPFQDTAISCIDRG--ESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSP 235 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSS-CCSSCCCHHHHHHHHHHTTT--CCEEEECCSSSHHHHHHHHHHHHHHH---TTCEEEEEES
T ss_pred CCcccCCCChhhhHHHHH-hCCCCCCHHHHHHHHHHHcC--CCEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEcC
Confidence 467777888777777765 55566999999999999999 99999999999999999999998873 4668999999
Q ss_pred CHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhh
Q 011104 180 TRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM 259 (493)
Q Consensus 180 t~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l 259 (493)
|++|+.|+++.+..++.. +..+.|+.. ...+++|+|+||++|.+++......+.++++|||||||++
T Consensus 236 traLa~Q~~~~l~~~~~~----VglltGd~~---------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l 302 (1108)
T 3l9o_A 236 IKALSNQKYRELLAEFGD----VGLMTGDIT---------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYM 302 (1108)
T ss_dssp SHHHHHHHHHHHHHHTSS----EEEECSSCB---------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGT
T ss_pred cHHHHHHHHHHHHHHhCC----ccEEeCccc---------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhc
Confidence 999999999999998763 334444432 2235799999999999999988777899999999999999
Q ss_pred hcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChh--HHHHHHHHhccCceeeeccccccccCceEEEEeCCCh-----
Q 011104 260 LDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNET--VKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDE----- 332 (493)
Q Consensus 260 ~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 332 (493)
.+. +|...+..++..++. ..|+++||||++.. +..++......+..+.... .....+.++++.....
T Consensus 303 ~d~-~rg~~~e~ii~~l~~---~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~--~rp~pl~~~~~~~~~~~~~~~ 376 (1108)
T 3l9o_A 303 RDK-ERGVVWEETIILLPD---KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTN--FRPTPLQHYLFPAHGDGIYLV 376 (1108)
T ss_dssp TSH-HHHHHHHHHHHHSCT---TSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEEC--CCSSCEEEEEEETTSSCCEEE
T ss_pred ccc-chHHHHHHHHHhcCC---CceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecC--CCcccceEEEeecCCcceeee
Confidence 874 778888888887765 78999999999864 4455555555554443322 1222223322211100
Q ss_pred -------------------------------------------------HHHHHHHHHHHHHhcccCCcEEEEcCChhhH
Q 011104 333 -------------------------------------------------LAKVMVIRDRIFELGEKMGQTIIFVRTKNSA 363 (493)
Q Consensus 333 -------------------------------------------------~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~ 363 (493)
...+..++..+.. ...+++||||+++..|
T Consensus 377 vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~--~~~~~vIVF~~sr~~~ 454 (1108)
T 3l9o_A 377 VDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK--KKYNPVIVFSFSKRDC 454 (1108)
T ss_dssp EETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH--TTCCCEEEEESCHHHH
T ss_pred eccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh--cCCCCEEEEeCcHHHH
Confidence 1122222222222 2356999999999999
Q ss_pred HHHHHHHHhCCCc---------------------------------------EEEecCCCCHHHHHHHHHHHHcCCCcEE
Q 011104 364 SALHKALKDFGYE---------------------------------------VTTIMGATIQEERDKIVKEFKDGLTQVL 404 (493)
Q Consensus 364 ~~l~~~L~~~~~~---------------------------------------~~~l~~~~~~~~r~~~~~~f~~g~~~vL 404 (493)
+.++..|...++. +..+||+|++.+|..+++.|++|.++||
T Consensus 455 e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVL 534 (1108)
T 3l9o_A 455 EELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVL 534 (1108)
T ss_dssp HHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEE
Confidence 9999998653322 7999999999999999999999999999
Q ss_pred EEeCccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCC--CcceEEEEeeCCccHHHHHHH
Q 011104 405 ISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG--RKGVVFNLLMDGDDMIIMEKI 474 (493)
Q Consensus 405 v~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g--~~g~~i~l~~~~~~~~~~~~i 474 (493)
|||+++++|||+|++++||+++.|+....+.+.|+.+|+||+|||||.| ..|.|++++.+..+...+..+
T Consensus 535 VAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l 606 (1108)
T 3l9o_A 535 FATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 606 (1108)
T ss_dssp EEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHH
T ss_pred EECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHH
Confidence 9999999999999999999999887766555568889999999999999 689999998877655544443
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.2e-50 Score=407.58 Aligned_cols=339 Identities=16% Similarity=0.230 Sum_probs=261.7
Q ss_pred CCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcC
Q 011104 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (493)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 179 (493)
.+|+++++++.+.+.|...+||..|+|+|.++|+.++.| +|+++.+|||+|||++|++|++.. .+.+|||+|
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g--~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P 73 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSG--RDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSP 73 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTT--CCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECS
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcC--CCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECC
Confidence 479999999999999997799999999999999999999 999999999999999999999854 357999999
Q ss_pred CHHHHHHHHHHHHHHhcccCceeeEeecCCCCCccc--ccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecch
Q 011104 180 TRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (493)
Q Consensus 180 t~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah 257 (493)
+++|+.|+.+.++.++ +.+..+.+........ ........++|+|+||++|........+...++++|||||||
T Consensus 74 ~~aL~~q~~~~l~~~g----i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH 149 (523)
T 1oyw_A 74 LISLMKDQVDQLQANG----VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAH 149 (523)
T ss_dssp CHHHHHHHHHHHHHTT----CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGG
T ss_pred hHHHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcc
Confidence 9999999999998863 4444444443221110 111112357899999999853222222345789999999999
Q ss_pred hhhcc-cCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhc-cCceeeeccccccccCceEEEEeCCChHHH
Q 011104 258 HMLDE-AGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVK-DYNQLFVKKEELSLESVKQYKVYCPDELAK 335 (493)
Q Consensus 258 ~l~~~-~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (493)
++..+ ..|+..+..+.. +....++.+++++|||+++.+...+...+. ....+.... .....+........ .+
T Consensus 150 ~i~~~g~~fr~~~~~l~~-l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--~~r~~l~~~v~~~~---~~ 223 (523)
T 1oyw_A 150 CISQWGHDFRPEYAALGQ-LRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS--FDRPNIRYMLMEKF---KP 223 (523)
T ss_dssp GGCTTSSCCCHHHHGGGG-HHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECC--CCCTTEEEEEEECS---SH
T ss_pred ccCcCCCccHHHHHHHHH-HHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCC--CCCCceEEEEEeCC---CH
Confidence 99863 237766655432 333334689999999999887665555443 222222221 12223332222222 23
Q ss_pred HHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCC
Q 011104 336 VMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFD 415 (493)
Q Consensus 336 ~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gld 415 (493)
...+.+.+... .++++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 224 ~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD 301 (523)
T 1oyw_A 224 LDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGIN 301 (523)
T ss_dssp HHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTC
T ss_pred HHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCC
Confidence 34444444332 4579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCc
Q 011104 416 QQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466 (493)
Q Consensus 416 i~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~ 466 (493)
+|++++||+|++| .|++.|+||+||+||.|.+|.|++|+.+.+
T Consensus 302 ~p~v~~VI~~~~p--------~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d 344 (523)
T 1oyw_A 302 KPNVRFVVHFDIP--------RNIESYYQETGRAGRDGLPAEAMLFYDPAD 344 (523)
T ss_dssp CTTCCEEEESSCC--------SSHHHHHHHHTTSCTTSSCEEEEEEECHHH
T ss_pred ccCccEEEEECCC--------CCHHHHHHHhccccCCCCCceEEEEeCHHH
Confidence 9999999999999 899999999999999999999999997654
No 19
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.6e-50 Score=400.48 Aligned_cols=343 Identities=18% Similarity=0.228 Sum_probs=263.0
Q ss_pred HHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHH
Q 011104 110 ELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLE 189 (493)
Q Consensus 110 ~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~ 189 (493)
.+.+.+.+.+|| .|+|+|.++++.++.| +|+++++|||||||++|++|++..+ ..++++||++||++|+.|+++
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~--~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~ 82 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQG--KSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLE 82 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTT--CCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcC--CCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHH
Confidence 445555555677 6999999999999999 8999999999999999999988776 356789999999999999999
Q ss_pred HHHHHhcccCceeeEeecCCCCCcc--cccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhcc-----
Q 011104 190 VLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDE----- 262 (493)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~----- 262 (493)
.++.++. .++.+..++|+...... .........++|+|+||++|.+++.. +.+.++++||+||||++..+
T Consensus 83 ~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d 159 (414)
T 3oiy_A 83 RLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNID 159 (414)
T ss_dssp HHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHH
T ss_pred HHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhh
Confidence 9999987 77788777776643110 00111112379999999999888764 56778999999999976532
Q ss_pred -----cCCHHH-HHHHHHHhh------hc--CCCeeEEEEeee-cChhHHH-HHHHHhccCceeeeccccccccCceEEE
Q 011104 263 -----AGFRDD-SLRIMKDIE------RS--SGHCQVLLFSAT-FNETVKN-FVTRIVKDYNQLFVKKEELSLESVKQYK 326 (493)
Q Consensus 263 -----~~~~~~-~~~i~~~~~------~~--~~~~q~v~~SAT-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (493)
++|... +..++..++ .. .+..|+++|||| ++..+.. +...++. +...........+.+.+
T Consensus 160 ~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~ 235 (414)
T 3oiy_A 160 TLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVR 235 (414)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEE
T ss_pred hHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchhee
Confidence 578777 777777765 01 137899999999 5655442 2333322 22233344455677777
Q ss_pred EeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEE-EecCCCCHHHHHHHHHHHHcCCCcEEE
Q 011104 327 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVT-TIMGATIQEERDKIVKEFKDGLTQVLI 405 (493)
Q Consensus 327 ~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~-~l~~~~~~~~r~~~~~~f~~g~~~vLv 405 (493)
..+.. ...+...+.. .++++||||+++..++.++..|...++.+. .+||. +|. ++.|++|+.+|||
T Consensus 236 ~~~~~----~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLv 302 (414)
T 3oiy_A 236 ISSRS----KEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILI 302 (414)
T ss_dssp ESSCC----HHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEE
T ss_pred eccCH----HHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEE
Confidence 66643 2233333333 248999999999999999999999999998 99995 344 9999999999999
Q ss_pred E----eCccccCCCCCC-CCEEEEccCCCCCCCCCCCCcccccccccccccCC----CcceEEEEeeCCccHHHHHHHHH
Q 011104 406 S----TDVLARGFDQQQ-VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG----RKGVVFNLLMDGDDMIIMEKIER 476 (493)
Q Consensus 406 ~----T~~~~~Gldi~~-v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g----~~g~~i~l~~~~~~~~~~~~i~~ 476 (493)
| |+++++|+|+|+ +++||+|++|.. .+...|+||+||+||.| +.|.|++|+ ++..+++.+++
T Consensus 303 at~s~T~~~~~GiDip~~v~~VI~~~~p~~------~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~---~~~~~~~~l~~ 373 (414)
T 3oiy_A 303 GVQAYYGKLTRGVDLPERIKYVIFWGTPSG------PDVYTYIQASGRSSRILNGVLVKGVSVIFE---EDEEIFESLKT 373 (414)
T ss_dssp EECCTTCCCCCCCCCTTTCCEEEEESCCTT------TCHHHHHHHHGGGCCEETTEECCEEEEEEC---CCHHHHHHHHH
T ss_pred EecCcCchhhccCccccccCEEEEECCCCC------CCHHHHHHHhCccccCCCCCCcceEEEEEE---ccHHHHHHHHH
Confidence 9 999999999999 999999999931 36889999999999987 589999998 46677888888
Q ss_pred HhC--CCceeecC
Q 011104 477 YFD--IKVTEVQT 487 (493)
Q Consensus 477 ~~~--~~~~~~~~ 487 (493)
.++ .+++..+.
T Consensus 374 ~~~~~~~~~~~~~ 386 (414)
T 3oiy_A 374 RLLLIAEEEIIEE 386 (414)
T ss_dssp HHHHHHCCCEEEG
T ss_pred Hhccccccccccc
Confidence 888 55554443
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.2e-46 Score=397.33 Aligned_cols=358 Identities=18% Similarity=0.213 Sum_probs=264.1
Q ss_pred CCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhh-hcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEE
Q 011104 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPM-ILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (493)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~-il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil 177 (493)
..+|+++++++.+.+.+.. +||..|+|+|.++++. +..+ ++++++||||||||+++.++++..+.. .+.+++|+
T Consensus 7 ~~~~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~--~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~il~i 81 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKK-RGIKKLNPPQTEAVKKGLLEG--NRLLLTSPTGSGKTLIAEMGIISFLLK--NGGKAIYV 81 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHT-TSCCBCCHHHHHHHHTTTTTT--CCEEEECCTTSCHHHHHHHHHHHHHHH--SCSEEEEE
T ss_pred cCcHHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHhcCC--CcEEEEcCCCCcHHHHHHHHHHHHHHH--CCCeEEEE
Confidence 4579999999999999986 9999999999999999 6676 999999999999999999999987642 25699999
Q ss_pred cCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecch
Q 011104 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (493)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah 257 (493)
+|+++|+.|+++.++.+. ..++.+....|........ ...++|+|+||++|..++..+...+.++++||+||+|
T Consensus 82 ~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~-----~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 82 TPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW-----LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp CSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG-----GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred eCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh-----cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 999999999999986554 3477777666654433211 1258999999999999998876668999999999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEE-----------E
Q 011104 258 HMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQY-----------K 326 (493)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 326 (493)
++.+ .++...+..++..++ +.|+++||||+++ ...+ ..++..+. +....... .+... .
T Consensus 156 ~l~~-~~~~~~l~~i~~~~~----~~~ii~lSATl~n-~~~~-~~~l~~~~-~~~~~r~~---~l~~~~~~~~~~~~~~~ 224 (715)
T 2va8_A 156 YLND-PERGPVVESVTIRAK----RRNLLALSATISN-YKQI-AKWLGAEP-VATNWRPV---PLIEGVIYPERKKKEYN 224 (715)
T ss_dssp GGGC-TTTHHHHHHHHHHHH----TSEEEEEESCCTT-HHHH-HHHHTCEE-EECCCCSS---CEEEEEEEECSSTTEEE
T ss_pred hcCC-cccchHHHHHHHhcc----cCcEEEEcCCCCC-HHHH-HHHhCCCc-cCCCCCCC---CceEEEEecCCccccee
Confidence 9876 467777777777765 5799999999975 2333 33433211 11111111 11111 0
Q ss_pred EeCCC--------hHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCC------------------------
Q 011104 327 VYCPD--------ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFG------------------------ 374 (493)
Q Consensus 327 ~~~~~--------~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~------------------------ 374 (493)
..... ....... +.+....++++||||+++++++.++..|....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 300 (715)
T 2va8_A 225 VIFKDNTTKKVHGDDAIIAY----TLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGG 300 (715)
T ss_dssp EEETTSCEEEEESSSHHHHH----HHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSC
T ss_pred eecCcchhhhcccchHHHHH----HHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhcc
Confidence 11111 1122222 33333457899999999999999999998642
Q ss_pred ------------CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCCCCEEEE----ccCCCCCCCCCCCC
Q 011104 375 ------------YEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN----YDPPVKHGKHLEPD 438 (493)
Q Consensus 375 ------------~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~v~~Vi~----~~~p~~~~~~~~~s 438 (493)
..+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ |++.... ...+.|
T Consensus 301 ~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~-~~~~~s 379 (715)
T 2va8_A 301 SDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAG-YYDEIP 379 (715)
T ss_dssp HHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC---------------C
T ss_pred ccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCC-CCCcCC
Confidence 24899999999999999999999999999999999999999999999999 8821100 011278
Q ss_pred cccccccccccccCC--CcceEEEEeeCCccHHHHHHHHHHhCCCceee
Q 011104 439 CEVYLHRIGRAGRFG--RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485 (493)
Q Consensus 439 ~~~y~qr~GR~~R~g--~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~~~ 485 (493)
..+|.||+||+||.| ..|.|+.++++.++ +...+++++....+.+
T Consensus 380 ~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~--~~~~~~~~l~~~~e~~ 426 (715)
T 2va8_A 380 IMEYKQMSGRAGRPGFDQIGESIVVVRDKED--VDRVFKKYVLSDVEPI 426 (715)
T ss_dssp HHHHHHHHTTBCCTTTCSCEEEEEECSCGGG--HHHHHHHTTSSCCCCC
T ss_pred HHHHHHHhhhcCCCCCCCCceEEEEeCCchH--HHHHHHHHHcCCCCCc
Confidence 999999999999987 47999999876543 2234555655444443
No 21
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=5.4e-47 Score=399.57 Aligned_cols=351 Identities=18% Similarity=0.187 Sum_probs=268.6
Q ss_pred CcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhh-hcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcC
Q 011104 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPM-ILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (493)
Q Consensus 101 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~-il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 179 (493)
+|+++++++.+.+.+.. +||..|+|+|.++++. +..| ++++++||||||||++|.+|++..+.. .+.+++|++|
T Consensus 2 ~f~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~--~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~~l~i~P 76 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKE-RGIESFYPPQAEALKSGILEG--KNALISIPTASGKTLIAEIAMVHRILT--QGGKAVYIVP 76 (720)
T ss_dssp BGGGCCSCHHHHHHHHH-TTCCBCCHHHHHHHTTTGGGT--CEEEEECCGGGCHHHHHHHHHHHHHHH--HCSEEEEECS
T ss_pred cHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCC--CcEEEEcCCccHHHHHHHHHHHHHHHh--CCCEEEEEcC
Confidence 58999999999999987 9999999999999998 7777 999999999999999999999977642 2579999999
Q ss_pred CHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhh
Q 011104 180 TRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM 259 (493)
Q Consensus 180 t~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l 259 (493)
+++|+.|+++.++++.. .++.+...+|....... ....++|+|+||++|..++......+.++++||+||+|.+
T Consensus 77 ~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~-----~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 77 LKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE-----WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp SGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG-----GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred cHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc-----ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 99999999999975543 47777777765433221 1235799999999999998887666889999999999999
Q ss_pred hcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEE-----eCCC---
Q 011104 260 LDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKV-----YCPD--- 331 (493)
Q Consensus 260 ~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--- 331 (493)
.+ .++...+..++..+.. +.|+++||||+++. .. +..++.... +... ..+..+...+. .+..
T Consensus 151 ~~-~~r~~~~~~ll~~l~~---~~~ii~lSATl~n~-~~-~~~~l~~~~-~~~~---~rp~~l~~~~~~~~~~~~~~~~~ 220 (720)
T 2zj8_A 151 GS-RDRGATLEVILAHMLG---KAQIIGLSATIGNP-EE-LAEWLNAEL-IVSD---WRPVKLRRGVFYQGFVTWEDGSI 220 (720)
T ss_dssp GC-TTTHHHHHHHHHHHBT---TBEEEEEECCCSCH-HH-HHHHTTEEE-EECC---CCSSEEEEEEEETTEEEETTSCE
T ss_pred CC-CcccHHHHHHHHHhhc---CCeEEEEcCCcCCH-HH-HHHHhCCcc-cCCC---CCCCcceEEEEeCCeeeccccch
Confidence 86 3677888888888874 78999999999752 33 333433211 1111 11111111111 0111
Q ss_pred --hHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC---------------------------------CCc
Q 011104 332 --ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF---------------------------------GYE 376 (493)
Q Consensus 332 --~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~---------------------------------~~~ 376 (493)
.......+ .+....++++||||+++++++.++..|.+. ...
T Consensus 221 ~~~~~~~~~~----~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~ 296 (720)
T 2zj8_A 221 DRFSSWEELV----YDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGG 296 (720)
T ss_dssp EECSSTTHHH----HHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTT
T ss_pred hhhhHHHHHH----HHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcC
Confidence 11122222 222334689999999999999999998753 124
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCCCCEEEE----cc----CCCCCCCCCCCCcccccccccc
Q 011104 377 VTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN----YD----PPVKHGKHLEPDCEVYLHRIGR 448 (493)
Q Consensus 377 ~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~v~~Vi~----~~----~p~~~~~~~~~s~~~y~qr~GR 448 (493)
+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ |+ .| .+..+|.||+||
T Consensus 297 v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~--------~s~~~~~Qr~GR 368 (720)
T 2zj8_A 297 VAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMER--------IPIIEVHQMLGR 368 (720)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEE--------CCHHHHHHHHTT
T ss_pred eeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCcc--------CCHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998 66 24 789999999999
Q ss_pred cccCC--CcceEEEEeeCCccHHHHHHHHHHhCCCceeecC
Q 011104 449 AGRFG--RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVQT 487 (493)
Q Consensus 449 ~~R~g--~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~~~~~ 487 (493)
+||.| ..|.|++++++.+ +...+++++...++++..
T Consensus 369 aGR~g~~~~G~~~~l~~~~~---~~~~~~~~~~~~~~~i~s 406 (720)
T 2zj8_A 369 AGRPKYDEVGEGIIVSTSDD---PREVMNHYIFGKPEKLFS 406 (720)
T ss_dssp BCCTTTCSEEEEEEECSSSC---HHHHHHHHTTSCCCCCCC
T ss_pred cCCCCCCCCceEEEEecCcc---HHHHHHHHhcCCCCCcEe
Confidence 99987 5799999998765 223455666655555543
No 22
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=4.7e-48 Score=406.56 Aligned_cols=351 Identities=17% Similarity=0.187 Sum_probs=264.9
Q ss_pred CcccCC--CCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEc
Q 011104 101 TFEDLN--LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (493)
Q Consensus 101 ~~~~~~--~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 178 (493)
+|++++ +++.+.+.+.. +||..|+|+|.++++.++.| ++++++||||||||++|.++++..+.. +.+++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~i~~~--~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~ 75 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKE-EGIEELFPPQAEAVEKVFSG--KNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVV 75 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHC-C---CCCCCCHHHHHHHTTC--SCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred chhhhhhccCHHHHHHHHh-CCCCCCCHHHHHHHHHHhCC--CcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEe
Confidence 578888 99999999986 99999999999999999988 999999999999999999999987643 56899999
Q ss_pred CCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchh
Q 011104 179 PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (493)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~ 258 (493)
|+++|+.|+++.++.+. ..++.+....|....... ....++|+|+||++|..++.+....+.++++||+||+|+
T Consensus 76 P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~-----~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 76 PLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE-----HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp SSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS-----CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred CcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh-----hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 99999999999986554 346777777665433221 123689999999999999988766688999999999999
Q ss_pred hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEe-----CCCh-
Q 011104 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVY-----CPDE- 332 (493)
Q Consensus 259 l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~- 332 (493)
+.+ .++...+..++..+....++.|+++||||+++ ...+ ..++..+ .+..... +..+...+.. ....
T Consensus 150 l~~-~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~-~~~l~~~-~~~~~~r---~~~l~~~~~~~~~~~~~~~~ 222 (702)
T 2p6r_A 150 LDS-EKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEI-AEWLDAD-YYVSDWR---PVPLVEGVLCEGTLELFDGA 222 (702)
T ss_dssp GGC-TTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHH-HHHTTCE-EEECCCC---SSCEEEEEECSSEEEEEETT
T ss_pred cCC-CCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHH-HHHhCCC-cccCCCC---CccceEEEeeCCeeeccCcc
Confidence 987 36778888888877666668999999999985 3333 3344322 1111111 1111111110 0000
Q ss_pred ------HHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC------------------------------CCc
Q 011104 333 ------LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF------------------------------GYE 376 (493)
Q Consensus 333 ------~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~------------------------------~~~ 376 (493)
......+. +....++++||||+++++++.++..|... +..
T Consensus 223 ~~~~~~~~~~~~~~----~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 298 (702)
T 2p6r_A 223 FSTSRRVKFEELVE----ECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKG 298 (702)
T ss_dssp EEEEEECCHHHHHH----HHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTT
T ss_pred hhhhhhhhHHHHHH----HHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcC
Confidence 01223332 22345789999999999999999988753 235
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCCCCEEEE----cc---CCCCCCCCCCCCccccccccccc
Q 011104 377 VTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN----YD---PPVKHGKHLEPDCEVYLHRIGRA 449 (493)
Q Consensus 377 ~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~v~~Vi~----~~---~p~~~~~~~~~s~~~y~qr~GR~ 449 (493)
+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .| .|..+|.||+||+
T Consensus 299 v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~--------~s~~~~~Qr~GRa 370 (702)
T 2p6r_A 299 AAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKR--------IKVSEYKQMAGRA 370 (702)
T ss_dssp CCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEE--------CCHHHHHHHHTTB
T ss_pred eEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCc--------CCHHHHHHHhhhc
Confidence 888999999999999999999999999999999999999999999999 66 44 7899999999999
Q ss_pred ccCC--CcceEEEEeeCCccHHHHHHHHHHhCCCceee
Q 011104 450 GRFG--RKGVVFNLLMDGDDMIIMEKIERYFDIKVTEV 485 (493)
Q Consensus 450 ~R~g--~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~~~ 485 (493)
||.| ..|.|+.++++.+ +...+++++....+.+
T Consensus 371 GR~g~~~~G~~~~l~~~~~---~~~~~~~~l~~~~e~~ 405 (702)
T 2p6r_A 371 GRPGMDERGEAIIIVGKRD---REIAVKRYIFGEPERI 405 (702)
T ss_dssp SCTTTCSCEEEEEECCGGG---HHHHHHTTTSSCCCCC
T ss_pred CCCCCCCCceEEEEecCcc---HHHHHHHHhcCCCCCc
Confidence 9988 5899999987654 2233444554444433
No 23
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=3e-47 Score=411.63 Aligned_cols=339 Identities=18% Similarity=0.218 Sum_probs=257.0
Q ss_pred HHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHH
Q 011104 112 LKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVL 191 (493)
Q Consensus 112 ~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~ 191 (493)
.+.+...+|| .|+|+|.+++|.++.| +|++++||||||||++|+++++..+ ..++++||++||++||.|+++.+
T Consensus 68 ~~~~~~~~gf-~pt~iQ~~ai~~il~g--~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l 141 (1104)
T 4ddu_A 68 RSFFKKKFGK-DLTGYQRLWAKRIVQG--KSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERL 141 (1104)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHTTT--CCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHHcC--CCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHH
Confidence 3344445788 5999999999999999 9999999999999999999988776 45678999999999999999999
Q ss_pred HHHhcccCceeeEeecCCCCCcc--cccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhc--------
Q 011104 192 RKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD-------- 261 (493)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~-------- 261 (493)
+.++ ..++.+..++|+.+.... .........++|+|+||++|.+++.. +.+.++++|||||||++..
T Consensus 142 ~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~ 218 (1104)
T 4ddu_A 142 QKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTL 218 (1104)
T ss_dssp HTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHH
T ss_pred HHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhh
Confidence 9987 677888888887754211 11111122489999999999888775 5678899999999986553
Q ss_pred --ccCCHHH-HHHHHHHhh------hc--CCCeeEEEEeee-cChhHHHH-HHHHhccCceeeeccccccccCceEEEEe
Q 011104 262 --EAGFRDD-SLRIMKDIE------RS--SGHCQVLLFSAT-FNETVKNF-VTRIVKDYNQLFVKKEELSLESVKQYKVY 328 (493)
Q Consensus 262 --~~~~~~~-~~~i~~~~~------~~--~~~~q~v~~SAT-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (493)
..||... +..++..++ .. ....|+++|||| .+..+... ....+ .+.+.........+.+.+..
T Consensus 219 L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l----~i~v~~~~~~~~~i~~~~~~ 294 (1104)
T 4ddu_A 219 LMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLL----NFTVGRLVSVARNITHVRIS 294 (1104)
T ss_dssp HHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHT----CCCCCBCCCCCCCEEEEEES
T ss_pred hHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcce----eEEeccCCCCcCCceeEEEe
Confidence 1578877 778888776 11 137899999999 56554422 22222 23344445566778888877
Q ss_pred CCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEE-EecCCCCHHHHHHHHHHHHcCCCcEEEE-
Q 011104 329 CPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVT-TIMGATIQEERDKIVKEFKDGLTQVLIS- 406 (493)
Q Consensus 329 ~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~-~l~~~~~~~~r~~~~~~f~~g~~~vLv~- 406 (493)
+.. ...+...+.. .++++||||+++..++.++..|...|+.+. .+||. |.+ ++.|++|+.+||||
T Consensus 295 ~~k----~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVat 361 (1104)
T 4ddu_A 295 SRS----KEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGV 361 (1104)
T ss_dssp CCC----HHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEE
T ss_pred cCH----HHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEe
Confidence 743 2333333333 248999999999999999999999999998 99992 555 99999999999999
Q ss_pred ---eCccccCCCCCC-CCEEEEccCCCC----------------------------------------------------
Q 011104 407 ---TDVLARGFDQQQ-VNLIVNYDPPVK---------------------------------------------------- 430 (493)
Q Consensus 407 ---T~~~~~Gldi~~-v~~Vi~~~~p~~---------------------------------------------------- 430 (493)
|+++++|||+|+ |++|||||+|..
T Consensus 362 as~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i 441 (1104)
T 4ddu_A 362 QAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKV 441 (1104)
T ss_dssp TTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999 999999999950
Q ss_pred ----------CC--CCCCCCcccccccccccccCCC----cceEEEEeeCCccHHHHHHHHHHhC
Q 011104 431 ----------HG--KHLEPDCEVYLHRIGRAGRFGR----KGVVFNLLMDGDDMIIMEKIERYFD 479 (493)
Q Consensus 431 ----------~~--~~~~~s~~~y~qr~GR~~R~g~----~g~~i~l~~~~~~~~~~~~i~~~~~ 479 (493)
+. ....+++.+|+||+|||||.|. .|.+++++ ++...++.+++.+.
T Consensus 442 ~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~---~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 442 KEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE---EDEEIFESLKTRLL 503 (1104)
T ss_dssp HHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC---CCHHHHHHHHHHHH
T ss_pred hhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE---ecHHHHHHHHHHHh
Confidence 00 0001267789999999999654 45556555 45666777777664
No 24
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.1e-47 Score=390.95 Aligned_cols=328 Identities=16% Similarity=0.190 Sum_probs=248.8
Q ss_pred hCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcc
Q 011104 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (493)
Q Consensus 118 ~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (493)
.+|| +|+|+|..++|.++.| + |+.++||+|||++|++|++.... .+..++||+||++||.|.++++..+...
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G--~--Iaea~TGeGKTlaf~LP~~l~aL---~g~~vlVltptreLA~qd~e~~~~l~~~ 150 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDG--N--IAEMKTGEGKTLTSTLPVYLNAL---TGKGVHVVTVNEYLASRDAEQMGKIFEF 150 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTT--S--EEECCTTSCHHHHHHHHHHHHHT---TSSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCC--C--EEEccCCcHHHHHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 4799 8999999999999999 6 99999999999999999984322 3568999999999999999999999999
Q ss_pred cCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHH-HHHHHcC------ccCCCCeeEEEEecchhhhcccC------
Q 011104 198 TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAK------KLGFSRLKILVYDEADHMLDEAG------ 264 (493)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~~~~~~~iVlDEah~l~~~~~------ 264 (493)
+++++.+++++.+...... ..+++|+|+||++| .+++... .+.+..+.++||||||+|+-+.+
T Consensus 151 lgl~v~~i~gg~~~~~r~~----~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIi 226 (844)
T 1tf5_A 151 LGLTVGLNLNSMSKDEKRE----AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLII 226 (844)
T ss_dssp TTCCEEECCTTSCHHHHHH----HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEE
T ss_pred cCCeEEEEeCCCCHHHHHH----hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhh
Confidence 9999999988765332221 23589999999999 5555432 35678999999999999983334
Q ss_pred ---------CHHHHHHHHHHhhhc------CCCeeEE-----------------EEeeecCh---hHHHHHH--HHhc-c
Q 011104 265 ---------FRDDSLRIMKDIERS------SGHCQVL-----------------LFSATFNE---TVKNFVT--RIVK-D 306 (493)
Q Consensus 265 ---------~~~~~~~i~~~~~~~------~~~~q~v-----------------~~SAT~~~---~~~~~~~--~~~~-~ 306 (493)
|...+..|+..++.. ....|++ +||||++. .+...++ .++. +
T Consensus 227 sg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d 306 (844)
T 1tf5_A 227 SGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKD 306 (844)
T ss_dssp EEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBT
T ss_pred cCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcC
Confidence 556777777776520 1256777 89999874 3332221 1221 1
Q ss_pred Cceee------------------------------------eccccccccCce---------------------------
Q 011104 307 YNQLF------------------------------------VKKEELSLESVK--------------------------- 323 (493)
Q Consensus 307 ~~~~~------------------------------------~~~~~~~~~~~~--------------------------- 323 (493)
...+. +.....+...+.
T Consensus 307 ~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~ 386 (844)
T 1tf5_A 307 VDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRN 386 (844)
T ss_dssp TTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHH
T ss_pred CceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHH
Confidence 11110 000000000000
Q ss_pred -------------------EEEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCC
Q 011104 324 -------------------QYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGAT 384 (493)
Q Consensus 324 -------------------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~ 384 (493)
+..........|...+...+......+.++||||+|++.++.|+..|...|+.+..+||++
T Consensus 387 iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~ 466 (844)
T 1tf5_A 387 IYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKN 466 (844)
T ss_dssp HHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSC
T ss_pred HhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCc
Confidence 0001122456677777776665545577999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCCCcEEEEeCccccCCCCC--------CCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcc
Q 011104 385 IQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ--------QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG 456 (493)
Q Consensus 385 ~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~--------~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g 456 (493)
.+.+|..+...|+.| .|+|||++++||+||+ ++.+||+|+.| .|...|+||+|||||+|.+|
T Consensus 467 ~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p--------~s~r~y~hr~GRTGRqG~~G 536 (844)
T 1tf5_A 467 HEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERH--------ESRRIDNQLRGRSGRQGDPG 536 (844)
T ss_dssp HHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCC--------SSHHHHHHHHTTSSGGGCCE
T ss_pred cHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCC--------CCHHHHHhhcCccccCCCCC
Confidence 888887666666555 6999999999999999 78899999999 89999999999999999999
Q ss_pred eEEEEeeCCcc
Q 011104 457 VVFNLLMDGDD 467 (493)
Q Consensus 457 ~~i~l~~~~~~ 467 (493)
.+++|++..++
T Consensus 537 ~s~~~vs~eD~ 547 (844)
T 1tf5_A 537 ITQFYLSMEDE 547 (844)
T ss_dssp EEEEEEETTSS
T ss_pred eEEEEecHHHH
Confidence 99999998765
No 25
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=5.4e-47 Score=399.94 Aligned_cols=358 Identities=19% Similarity=0.210 Sum_probs=221.0
Q ss_pred HHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCC--CCCeEEEEcCCHHHHHHHHHHH
Q 011104 114 GLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL--KAPQALCICPTRELAIQNLEVL 191 (493)
Q Consensus 114 ~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~--~~~~~lil~Pt~~La~q~~~~~ 191 (493)
.+.. +||..|+++|.++++.++.| +++++++|||+|||++|++|++..+.... .++++|||+||++|+.|+.+.+
T Consensus 5 ~l~~-~g~~~lr~~Q~~~i~~~l~g--~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~ 81 (696)
T 2ykg_A 5 DTNL-YSPFKPRNYQLELALPAMKG--KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVF 81 (696)
T ss_dssp --CT-TC--CCCHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHH
T ss_pred cccc-cCCCCccHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHH
Confidence 4444 89999999999999999998 99999999999999999999998775332 2368999999999999999999
Q ss_pred HHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCcc-CCCCeeEEEEecchhhhcccCCHHHHH
Q 011104 192 RKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLDEAGFRDDSL 270 (493)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~~~~~~~iVlDEah~l~~~~~~~~~~~ 270 (493)
++++...++.+..+.|+........ ....+++|+|+||++|.+++..+.+ .+.++++|||||||++.....+...+.
T Consensus 82 ~~~~~~~~~~v~~~~g~~~~~~~~~--~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~ 159 (696)
T 2ykg_A 82 SKYFERHGYRVTGISGATAENVPVE--QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMF 159 (696)
T ss_dssp HHHTTTTTCCEEEECSSSCSSSCHH--HHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HHHhccCCceEEEEeCCccccccHH--HhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHH
Confidence 9998877888888877764432111 1112579999999999999998776 688999999999999986432222222
Q ss_pred HHHHH-h-hhcCCCeeEEEEeeecC-------hhHHHHHHHHhc----------------------cCceeeecccccc-
Q 011104 271 RIMKD-I-ERSSGHCQVLLFSATFN-------ETVKNFVTRIVK----------------------DYNQLFVKKEELS- 318 (493)
Q Consensus 271 ~i~~~-~-~~~~~~~q~v~~SAT~~-------~~~~~~~~~~~~----------------------~~~~~~~~~~~~~- 318 (493)
..+.. + ....+..++++||||+. ......+...+. .|...........
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 239 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 239 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccC
Confidence 22222 1 11134679999999986 122111111111 1110000000000
Q ss_pred --------------------------------------------------------------------------------
Q 011104 319 -------------------------------------------------------------------------------- 318 (493)
Q Consensus 319 -------------------------------------------------------------------------------- 318 (493)
T Consensus 240 ~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 319 (696)
T 2ykg_A 240 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 319 (696)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ------------------------------ccCceEEEE---------------eCCChHHHHHHHHHHHHHhc--ccCC
Q 011104 319 ------------------------------LESVKQYKV---------------YCPDELAKVMVIRDRIFELG--EKMG 351 (493)
Q Consensus 319 ------------------------------~~~~~~~~~---------------~~~~~~~~~~~l~~~l~~~~--~~~~ 351 (493)
...+.+.+. .......+...+...+.... ...+
T Consensus 320 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 399 (696)
T 2ykg_A 320 NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 399 (696)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTC
T ss_pred hHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCC
Confidence 000000000 00001234444444444332 2467
Q ss_pred cEEEEcCChhhHHHHHHHHHhCC----CcEEEe--------cCCCCHHHHHHHHHHHHc-CCCcEEEEeCccccCCCCCC
Q 011104 352 QTIIFVRTKNSASALHKALKDFG----YEVTTI--------MGATIQEERDKIVKEFKD-GLTQVLISTDVLARGFDQQQ 418 (493)
Q Consensus 352 ~~lVf~~s~~~~~~l~~~L~~~~----~~~~~l--------~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~Gldi~~ 418 (493)
++||||+++..++.+++.|...+ +.+..+ ||+|++.+|..+++.|++ |..+|||||+++++|||+|+
T Consensus 400 ~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~ 479 (696)
T 2ykg_A 400 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQ 479 (696)
T ss_dssp CEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CC
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCcc
Confidence 99999999999999999999988 899988 559999999999999998 99999999999999999999
Q ss_pred CCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHH----HHHhCCCceeecC
Q 011104 419 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKI----ERYFDIKVTEVQT 487 (493)
Q Consensus 419 v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i----~~~~~~~~~~~~~ 487 (493)
+++||+||+| .++..|+||+|| ||. +.|.|+.|++..+ ......+ +++++..+.+++.
T Consensus 480 v~~VI~~d~p--------~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~ 541 (696)
T 2ykg_A 480 CNLVILYEYV--------GNVIKMIQTRGR-GRA-RGSKCFLLTSNAG-VIEKEQINMYKEKMMNDSILRLQT 541 (696)
T ss_dssp CSEEEEESCC----------CCCC-----------CCCEEEEEESCHH-HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCC--------CCHHHHHHhhcc-CcC-CCceEEEEecCCC-HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999 788899999999 998 7899998887543 3223333 5555555555544
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.5e-46 Score=385.25 Aligned_cols=329 Identities=17% Similarity=0.194 Sum_probs=218.1
Q ss_pred CCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCC--CCCeEEEEcCCHHHHHHHHHHHHHHhcccCc
Q 011104 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL--KAPQALCICPTRELAIQNLEVLRKMGKHTGI 200 (493)
Q Consensus 123 ~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~--~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~ 200 (493)
.|+|+|.++++.++.| +++++++|||+|||++|++|++..+.... .++++|||+||++|+.|+.+.+.+++...++
T Consensus 4 ~~~~~Q~~~i~~~~~~--~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 4 KPRNYQLELALPAKKG--KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCcHHHHHHHHHHhCC--CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 5999999999999998 99999999999999999999998876543 2678999999999999999999999887788
Q ss_pred eeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCcc-CCCCeeEEEEecchhhhcccCCHHHHHHHHHHhhh-
Q 011104 201 TSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER- 278 (493)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~- 278 (493)
.+..+.|+...... ......+++|+|+||++|.+++....+ .+.++++||+||||++.....+...+...+.....
T Consensus 82 ~~~~~~g~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 82 NIASISGATSDSVS--VQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp CEEEECTTTGGGSC--HHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred EEEEEcCCCcchhh--HHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 88888777643321 111122478999999999999988776 78899999999999998743222222222222211
Q ss_pred -cCCCeeEEEEeeecChh----H---HHHHHHHhccC--ceeeeccc------cccccCceEEEEeCC------------
Q 011104 279 -SSGHCQVLLFSATFNET----V---KNFVTRIVKDY--NQLFVKKE------ELSLESVKQYKVYCP------------ 330 (493)
Q Consensus 279 -~~~~~q~v~~SAT~~~~----~---~~~~~~~~~~~--~~~~~~~~------~~~~~~~~~~~~~~~------------ 330 (493)
..+..|+++||||++.. + ...+..+.... ..+..... .......... ..+.
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 238 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKIS-RKVASRTSNTFKCIIS 238 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEE-EECCCCSCCHHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEE-EEecCcccChHHHHHH
Confidence 12467999999998542 1 11111111111 11111100 0000000000 0000
Q ss_pred --------------------------------------------------------------------------------
Q 011104 331 -------------------------------------------------------------------------------- 330 (493)
Q Consensus 331 -------------------------------------------------------------------------------- 330 (493)
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence
Q ss_pred -------------------------------------------------ChHHHHHHHHHHHHHhc--ccCCcEEEEcCC
Q 011104 331 -------------------------------------------------DELAKVMVIRDRIFELG--EKMGQTIIFVRT 359 (493)
Q Consensus 331 -------------------------------------------------~~~~~~~~l~~~l~~~~--~~~~~~lVf~~s 359 (493)
....|...+.+.+.... ...+++||||++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 398 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKT 398 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCc
Confidence 00123333333333322 235899999999
Q ss_pred hhhHHHHHHHHHhCC----C--------cEEEecCCCCHHHHHHHHHHHHc-CCCcEEEEeCccccCCCCCCCCEEEEcc
Q 011104 360 KNSASALHKALKDFG----Y--------EVTTIMGATIQEERDKIVKEFKD-GLTQVLISTDVLARGFDQQQVNLIVNYD 426 (493)
Q Consensus 360 ~~~~~~l~~~L~~~~----~--------~~~~l~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~Gldi~~v~~Vi~~~ 426 (493)
+..++.++..|...+ + ....+||+|++.+|..+++.|++ |..+|||||+++++|||+|++++||+||
T Consensus 399 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 399 RALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYE 478 (555)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEES
T ss_pred HHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeC
Confidence 999999999999864 3 44455669999999999999999 9999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCc
Q 011104 427 PPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466 (493)
Q Consensus 427 ~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~ 466 (493)
+| .++..|+||+|| ||. +.|.+++|+++.+
T Consensus 479 ~p--------~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~ 508 (555)
T 3tbk_A 479 YV--------GNVIKMIQTRGR-GRA-RDSKCFLLTSSAD 508 (555)
T ss_dssp CC--------SSCCCEECSSCC-CTT-TSCEEEEEESCHH
T ss_pred CC--------CCHHHHHHhcCc-CcC-CCceEEEEEcCCC
Confidence 99 778889999999 998 8999999998664
No 27
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.1e-46 Score=387.97 Aligned_cols=331 Identities=16% Similarity=0.195 Sum_probs=193.8
Q ss_pred CCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCC--CCeEEEEcCCHHHHHHHHHHHHHHhc
Q 011104 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLK--APQALCICPTRELAIQNLEVLRKMGK 196 (493)
Q Consensus 119 ~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (493)
++...|+|+|.++++.++.| +++++++|||||||++|++|++..+..... ++++|||+||++|+.|+.+.+++++.
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~--~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 3 METKKARSYQIELAQPAING--KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp -----CCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 34457999999999999998 999999999999999999999988754332 67899999999999999999999988
Q ss_pred ccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCcc-CCCCeeEEEEecchhhhcccCCHHHH-HHHHH
Q 011104 197 HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLDEAGFRDDS-LRIMK 274 (493)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~~~~~~~iVlDEah~l~~~~~~~~~~-~~i~~ 274 (493)
..++.+..+.|+...... ......+++|+|+||++|.+++....+ .+.++++||+||||++... ++...+ ..++.
T Consensus 81 ~~~~~~~~~~g~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~-~~~~~~~~~~~~ 157 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVS--VEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN-HPYNVLMTRYLE 157 (556)
T ss_dssp GGTCCEEECCCC-----C--HHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTT-SHHHHHHHHHHH
T ss_pred ccCceEEEEeCCCCcchh--HHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCc-chHHHHHHHHHH
Confidence 878888777776643321 111112478999999999999988877 7899999999999999874 332222 12222
Q ss_pred H-hhhcCCCeeEEEEeeecChh----HH-------HHHHHHhccCceeeecccc------ccccCceEEEEeC---C---
Q 011104 275 D-IERSSGHCQVLLFSATFNET----VK-------NFVTRIVKDYNQLFVKKEE------LSLESVKQYKVYC---P--- 330 (493)
Q Consensus 275 ~-~~~~~~~~q~v~~SAT~~~~----~~-------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---~--- 330 (493)
. +....+..++++||||++.. +. .+...+ .. ..+...... ............. .
T Consensus 158 ~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (556)
T 4a2p_A 158 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL-DI-QAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF 235 (556)
T ss_dssp HHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHH-TC-SEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHH
T ss_pred hhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhc-CC-eEecchhcchHHHHhcCCCCceEEEEcCCCcCChH
Confidence 1 11123468999999998531 11 111111 10 111110000 0000000000000 0
Q ss_pred --------------------------------------------------------------------------------
Q 011104 331 -------------------------------------------------------------------------------- 330 (493)
Q Consensus 331 -------------------------------------------------------------------------------- 330 (493)
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (556)
T 4a2p_A 236 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 315 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------------------------ChHHHHHHHHHHHHHhc--ccCCcEEE
Q 011104 331 -----------------------------------------------------DELAKVMVIRDRIFELG--EKMGQTII 355 (493)
Q Consensus 331 -----------------------------------------------------~~~~~~~~l~~~l~~~~--~~~~~~lV 355 (493)
....|...+.+.+.... ....++||
T Consensus 316 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lV 395 (556)
T 4a2p_A 316 IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLL 395 (556)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEE
Confidence 00123333344333332 45689999
Q ss_pred EcCChhhHHHHHHHHHhC------------CCcEEEecCCCCHHHHHHHHHHHHc-CCCcEEEEeCccccCCCCCCCCEE
Q 011104 356 FVRTKNSASALHKALKDF------------GYEVTTIMGATIQEERDKIVKEFKD-GLTQVLISTDVLARGFDQQQVNLI 422 (493)
Q Consensus 356 f~~s~~~~~~l~~~L~~~------------~~~~~~l~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~Gldi~~v~~V 422 (493)
||+++..++.++..|... |.....+||+|++.+|..+++.|++ |..+|||||+++++|||+|++++|
T Consensus 396 F~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~V 475 (556)
T 4a2p_A 396 FAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLV 475 (556)
T ss_dssp EESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEE
T ss_pred EEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEE
Confidence 999999999999999876 5556667888999999999999999 999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCc
Q 011104 423 VNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466 (493)
Q Consensus 423 i~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~ 466 (493)
|+||+| .++..|+||+|| ||. +.|.+++|++..+
T Consensus 476 I~~d~p--------~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~ 509 (556)
T 4a2p_A 476 VLYEYS--------GNVTKMIQVRGR-GRA-AGSKCILVTSKTE 509 (556)
T ss_dssp EEETCC--------SCHHHHHHC----------CCEEEEESCHH
T ss_pred EEeCCC--------CCHHHHHHhcCC-CCC-CCceEEEEEeCcc
Confidence 999999 789999999999 999 8999999998765
No 28
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-44 Score=385.09 Aligned_cols=326 Identities=14% Similarity=0.222 Sum_probs=248.4
Q ss_pred hCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcc
Q 011104 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (493)
Q Consensus 118 ~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (493)
.++|. |+++|.++++.++.| ++++++||||||||++|.++++..+. .+.++||++|+++|+.|+++.+..++.
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g--~~vLV~apTGSGKTlva~lai~~~l~---~g~rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRG--ESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHT--CEEEEECCTTSCHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred hCCCC-CCHHHHHHHHHHHcC--CCEEEECCCCCChHHHHHHHHHHHhc---cCCeEEEECChHHHHHHHHHHHHHHhC-
Confidence 37886 999999999999999 99999999999999999999988773 457999999999999999999998876
Q ss_pred cCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhcccCCHHHHHHHHHHhh
Q 011104 198 TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIE 277 (493)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~ 277 (493)
.+..+.|+.... ..++|+|+||++|..++.+....+.++++|||||+|++.+ .++...+..++..++
T Consensus 155 ---~vglltGd~~~~---------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d-~~rg~~~e~il~~l~ 221 (1010)
T 2xgj_A 155 ---DVGLMTGDITIN---------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD-KERGVVWEETIILLP 221 (1010)
T ss_dssp ---CEEEECSSCEEC---------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGC-TTTHHHHHHHHHHSC
T ss_pred ---CEEEEeCCCccC---------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcc-cchhHHHHHHHHhcC
Confidence 334444443221 2478999999999999988777789999999999999987 467777777777765
Q ss_pred hcCCCeeEEEEeeecChhH--HHHHHHHhccCceeeeccccccccCceEEEEeCC---------Ch--------------
Q 011104 278 RSSGHCQVLLFSATFNETV--KNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP---------DE-------------- 332 (493)
Q Consensus 278 ~~~~~~q~v~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-------------- 332 (493)
. ..|+++||||+++.. ..++......+..+.... ..+..+.+++.... ..
T Consensus 222 ~---~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~--~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1010)
T 2xgj_A 222 D---KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTN--FRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMAS 296 (1010)
T ss_dssp T---TCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEEC--CCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHT
T ss_pred C---CCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecC--CCcccceEEEEecCCcceeeeeccccccchHHHHHHHHH
Confidence 4 789999999998643 234444444444333322 12223333333211 00
Q ss_pred -------------------------------HHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCc-----
Q 011104 333 -------------------------------LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYE----- 376 (493)
Q Consensus 333 -------------------------------~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~----- 376 (493)
...+..+...+.. ....++||||+++..|+.++..|...++.
T Consensus 297 l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~ 374 (1010)
T 2xgj_A 297 ISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK--KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEK 374 (1010)
T ss_dssp CC------------------------------CHHHHHHHHHHH--HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHH
T ss_pred HhhhhcccccccccccccccccccccccccchHHHHHHHHHHHh--cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHH
Confidence 0111122222221 12458999999999999999999775442
Q ss_pred ----------------------------------EEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCCCCEE
Q 011104 377 ----------------------------------VTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLI 422 (493)
Q Consensus 377 ----------------------------------~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~v~~V 422 (493)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++|
T Consensus 375 ~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vV 454 (1010)
T 2xgj_A 375 EALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVV 454 (1010)
T ss_dssp HHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEE
T ss_pred HHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEE
Confidence 7899999999999999999999999999999999999999999999
Q ss_pred EE----ccCCCCCCCCCCCCcccccccccccccCCC--cceEEEEeeCCccHHHHHHH
Q 011104 423 VN----YDPPVKHGKHLEPDCEVYLHRIGRAGRFGR--KGVVFNLLMDGDDMIIMEKI 474 (493)
Q Consensus 423 i~----~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~--~g~~i~l~~~~~~~~~~~~i 474 (493)
|+ ||.+. +.+.++.+|.||+||+||.|. .|.|++++.+..+...+..+
T Consensus 455 I~~~~kfd~~~----~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 455 FTSVRKWDGQQ----FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp ESCSEEECSSC----EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred EeCCcccCCcC----CccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 99 88820 011689999999999999997 59999999876555444333
No 29
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2.5e-46 Score=404.94 Aligned_cols=340 Identities=19% Similarity=0.242 Sum_probs=256.1
Q ss_pred HHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHH
Q 011104 111 LLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEV 190 (493)
Q Consensus 111 ~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~ 190 (493)
+.+.+.+.+||. | ++|.++||.++.| +|++++||||||||+ |.+|++..+.. .++++||++||++||.|+++.
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il~g--~dvlv~apTGSGKTl-~~lp~l~~~~~--~~~~~lil~PtreLa~Q~~~~ 118 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRILRK--ESFAATAPTGVGKTS-FGLAMSLFLAL--KGKRCYVIFPTSLLVIQAAET 118 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHHTT--CCEECCCCBTSCSHH-HHHHHHHHHHT--TSCCEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHHhC--CCEEEEcCCCCCHHH-HHHHHHHHHhh--cCCeEEEEeccHHHHHHHHHH
Confidence 445566668999 9 9999999999999 999999999999998 88888877653 467899999999999999999
Q ss_pred HHHHhcccCc----eeeEeecCCCCCccc-ccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhcccCC
Q 011104 191 LRKMGKHTGI----TSECAVPTDSTNYVP-ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGF 265 (493)
Q Consensus 191 ~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~~~~ 265 (493)
++.++...++ .+.+++|+....... ....... ++|+|+||++|.+++.+ +.++++|||||||++++ +
T Consensus 119 l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~---~ 190 (1054)
T 1gku_B 119 IRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK---A 190 (1054)
T ss_dssp HHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT---S
T ss_pred HHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh---c
Confidence 9999988777 777787776554311 1112222 89999999999997765 66899999999999986 4
Q ss_pred HHHHHHHHHHhhh--------cCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeCCChHHHHH
Q 011104 266 RDDSLRIMKDIER--------SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM 337 (493)
Q Consensus 266 ~~~~~~i~~~~~~--------~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (493)
...+..++..+.- .....|+++||||++.. ..+...++..+..+.+.........+.+.+.... +..
T Consensus 191 ~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~~----k~~ 265 (1054)
T 1gku_B 191 SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDE----SIS 265 (1054)
T ss_dssp THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEESCC----CTT
T ss_pred cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEechh----HHH
Confidence 5677777776631 12357899999999987 5444444444444444444555566777666322 222
Q ss_pred HHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEE----eCccccC
Q 011104 338 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIS----TDVLARG 413 (493)
Q Consensus 338 ~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~----T~~~~~G 413 (493)
.+...+... ++++||||+++..|+.++..|+.. +.+..+||++ ..+++.|++|+.+|||| |+++++|
T Consensus 266 ~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rG 336 (1054)
T 1gku_B 266 TLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRG 336 (1054)
T ss_dssp TTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CC
T ss_pred HHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEec
Confidence 233322222 578999999999999999999988 9999999998 47889999999999999 8999999
Q ss_pred CCCCCC-CEEEEccCCC----------------------------------------------------CCCC-------
Q 011104 414 FDQQQV-NLIVNYDPPV----------------------------------------------------KHGK------- 433 (493)
Q Consensus 414 ldi~~v-~~Vi~~~~p~----------------------------------------------------~~~~------- 433 (493)
||+|+| ++||+||+|. ....
T Consensus 337 IDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 416 (1054)
T 1gku_B 337 LDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVV 416 (1054)
T ss_dssp SCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEE
T ss_pred cccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeE
Confidence 999996 9999999991 0000
Q ss_pred ----CCCCCcccccccccccccCCCcc--eEEEEeeCCccHHHHHHHHHHhCC
Q 011104 434 ----HLEPDCEVYLHRIGRAGRFGRKG--VVFNLLMDGDDMIIMEKIERYFDI 480 (493)
Q Consensus 434 ----~~~~s~~~y~qr~GR~~R~g~~g--~~i~l~~~~~~~~~~~~i~~~~~~ 480 (493)
....+..+|+||+|||||.|+.| .+++|+... +..+++.+++.++.
T Consensus 417 ~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~-d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 417 REGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLED-DSELLSAFIERAKL 468 (1054)
T ss_dssp ETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECS-CHHHHHHHHHHHHT
T ss_pred eecceecCcHHHHhhhhchhhhccCCCCceEEEEEEec-CHHHHHHHHHHHhh
Confidence 00047889999999999987776 478777765 56677888887774
No 30
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1e-45 Score=375.18 Aligned_cols=328 Identities=18% Similarity=0.161 Sum_probs=229.5
Q ss_pred hCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcc
Q 011104 118 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (493)
Q Consensus 118 ~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (493)
.+|. +|+++|..++|.++.| + ++.++||||||++|++|++.... .+.+++|++||++||.|.++++..++..
T Consensus 70 ~lg~-~p~~VQ~~~i~~ll~G--~--Iaem~TGsGKTlaf~LP~l~~~l---~g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 70 VFGM-RHFDVQLLGGMVLNER--C--IAEMRTGEGKTLTATLPAYLNAL---TGKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp HHSC-CCCHHHHHHHHHHHSS--E--EEECCTTSCHHHHHHHHHHHHHT---TSSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCChHHHhhcccccCC--e--eeeecCCchHHHHHHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 3675 7999999999999998 6 99999999999999999985432 3568999999999999999999999999
Q ss_pred cCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHH-HHHHHcC------ccCCCCeeEEEEecchhhhcccC------
Q 011104 198 TGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAK------KLGFSRLKILVYDEADHMLDEAG------ 264 (493)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~~~~~~~iVlDEah~l~~~~~------ 264 (493)
+++++.+++|+.+..... ...+++|+|+||++| .+++... .+.+..+.++||||||+|+.+.+
T Consensus 142 lgl~v~~i~GG~~~~~r~----~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIi 217 (853)
T 2fsf_A 142 LGLTVGINLPGMPAPAKR----EAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLII 217 (853)
T ss_dssp TTCCEEECCTTCCHHHHH----HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEE
T ss_pred cCCeEEEEeCCCCHHHHH----HhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccc
Confidence 999999998886532211 222589999999999 6777654 25678999999999999984333
Q ss_pred ---------CHHHHHHHHHHhhhc-----------------CCCeeEE------------------------EEeeecCh
Q 011104 265 ---------FRDDSLRIMKDIERS-----------------SGHCQVL------------------------LFSATFNE 294 (493)
Q Consensus 265 ---------~~~~~~~i~~~~~~~-----------------~~~~q~v------------------------~~SAT~~~ 294 (493)
|...+..|+..++.. ....|++ +||||++.
T Consensus 218 Sg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~ 297 (853)
T 2fsf_A 218 SGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIM 297 (853)
T ss_dssp EEC-----------------------------------------------------------------------------
T ss_pred cCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccch
Confidence 556677777777531 0134443 89999764
Q ss_pred ---hHHHHH--HHHhc--------c-----------------------------CceeeeccccccccCceE--------
Q 011104 295 ---TVKNFV--TRIVK--------D-----------------------------YNQLFVKKEELSLESVKQ-------- 324 (493)
Q Consensus 295 ---~~~~~~--~~~~~--------~-----------------------------~~~~~~~~~~~~~~~~~~-------- 324 (493)
.+...+ ..++. + +..+.+.....+...+.+
T Consensus 298 ~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~ 377 (853)
T 2fsf_A 298 LMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYE 377 (853)
T ss_dssp -----------------------------------------------------------CCCCCEEEEEEEHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhh
Confidence 221111 00110 0 001111111111111110
Q ss_pred --------------------------------------EEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHH
Q 011104 325 --------------------------------------YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASAL 366 (493)
Q Consensus 325 --------------------------------------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l 366 (493)
....+.....|...+...+......+.++||||+|++.++.|
T Consensus 378 kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~L 457 (853)
T 2fsf_A 378 KLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELV 457 (853)
T ss_dssp EEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHH
T ss_pred hhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHH
Confidence 011223456788888876766555678999999999999999
Q ss_pred HHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCCC---------------------------
Q 011104 367 HKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQV--------------------------- 419 (493)
Q Consensus 367 ~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~v--------------------------- 419 (493)
+..|...|+++..+||++.+.++..+.+.|+.| .|+|||++++||+||+..
T Consensus 458 s~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (853)
T 2fsf_A 458 SNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQV 535 (853)
T ss_dssp HHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhh
Confidence 999999999999999999888888888888888 699999999999999974
Q ss_pred ----------CEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCcc
Q 011104 420 ----------NLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 467 (493)
Q Consensus 420 ----------~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~ 467 (493)
.|||+|+.| .|...|.||+||+||.|.+|.+++|++..++
T Consensus 536 ~~~~V~~~GGl~VI~te~p--------es~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 536 RHDAVLEAGGLHIIGTERH--------ESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHTTSEEEEESSCC--------SSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred hhhHHHhcCCcEEEEccCC--------CCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 599999999 8999999999999999999999999987764
No 31
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=6.3e-45 Score=387.40 Aligned_cols=331 Identities=16% Similarity=0.191 Sum_probs=201.4
Q ss_pred CCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCC--CCCeEEEEcCCHHHHHHHHHHHHHHhc
Q 011104 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL--KAPQALCICPTRELAIQNLEVLRKMGK 196 (493)
Q Consensus 119 ~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~--~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (493)
+|+..|+|+|..+++.++.| +++++++|||||||++|++|++..+.... .++++|||+|+++|+.|+++.+++++.
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~--~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAING--KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp ----CCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred cCCCCCCHHHHHHHHHHHhC--CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 68889999999999999999 99999999999999999999998876543 267899999999999999999999998
Q ss_pred ccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCcc-CCCCeeEEEEecchhhhcccCCHHHHHHHHHH
Q 011104 197 HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLDEAGFRDDSLRIMKD 275 (493)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~ 275 (493)
..++.+..++|+....... .....+++|+|+||++|.+++....+ .+.++++|||||||++.....+...+..++..
T Consensus 322 ~~~~~v~~~~g~~~~~~~~--~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~ 399 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSV--EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (797)
T ss_dssp GGTCCEEEECCC-----CH--HHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhH--HHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 8788888888776443211 11123579999999999999988777 78899999999999988743222222222221
Q ss_pred -hhhcCCCeeEEEEeeecCh-----------hHHHHHHHHhccCceeeecccc------ccccCceEEEEeCC-------
Q 011104 276 -IERSSGHCQVLLFSATFNE-----------TVKNFVTRIVKDYNQLFVKKEE------LSLESVKQYKVYCP------- 330 (493)
Q Consensus 276 -~~~~~~~~q~v~~SAT~~~-----------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~------- 330 (493)
+....+..|+++||||+.. .+..+...+ .. ..+...... ........ +..+.
T Consensus 400 ~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L-~~-~~i~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 476 (797)
T 4a2q_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL-DI-QAISTVRENIQELQRFMNKPEID-VRLVKRRIHNPF 476 (797)
T ss_dssp HHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHH-TC-SEEECCCTTHHHHHHHSCCCCCE-EEECCCCSCCHH
T ss_pred hhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhc-CC-cEEecccccHHHHHHhcCCCceE-EEecCCCCCcHH
Confidence 1112446899999999852 121111111 10 011100000 00000000 00000
Q ss_pred --------------------------------------------------------------------------------
Q 011104 331 -------------------------------------------------------------------------------- 330 (493)
Q Consensus 331 -------------------------------------------------------------------------------- 330 (493)
T Consensus 477 ~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 556 (797)
T 4a2q_A 477 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 556 (797)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------------------------ChHHHHHHHHHHHHHh--cccCCcEEE
Q 011104 331 -----------------------------------------------------DELAKVMVIRDRIFEL--GEKMGQTII 355 (493)
Q Consensus 331 -----------------------------------------------------~~~~~~~~l~~~l~~~--~~~~~~~lV 355 (493)
....|+..+...+... ...+.++||
T Consensus 557 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLI 636 (797)
T 4a2q_A 557 IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLL 636 (797)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEE
T ss_pred hhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEE
Confidence 0011333333333332 144689999
Q ss_pred EcCChhhHHHHHHHHHhC------------CCcEEEecCCCCHHHHHHHHHHHHc-CCCcEEEEeCccccCCCCCCCCEE
Q 011104 356 FVRTKNSASALHKALKDF------------GYEVTTIMGATIQEERDKIVKEFKD-GLTQVLISTDVLARGFDQQQVNLI 422 (493)
Q Consensus 356 f~~s~~~~~~l~~~L~~~------------~~~~~~l~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~Gldi~~v~~V 422 (493)
||+++..++.++..|+.. |..+..+||+|++.+|..+++.|++ |..+|||||+++++|||+|++++|
T Consensus 637 F~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~V 716 (797)
T 4a2q_A 637 FAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLV 716 (797)
T ss_dssp EESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEE
T ss_pred EECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEE
Confidence 999999999999999873 5567778999999999999999999 999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCc
Q 011104 423 VNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466 (493)
Q Consensus 423 i~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~ 466 (493)
|+||+| .|+..|+||+|| ||. +.|.|++|++..+
T Consensus 717 I~yd~p--------~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~ 750 (797)
T 4a2q_A 717 VLYEYS--------GNVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (797)
T ss_dssp EEESCC--------SCHHHHHTC---------CCCEEEEECCHH
T ss_pred EEeCCC--------CCHHHHHHhcCC-CCC-CCceEEEEEeCCc
Confidence 999999 789999999999 999 8999999998764
No 32
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=4.9e-45 Score=370.45 Aligned_cols=329 Identities=18% Similarity=0.202 Sum_probs=252.4
Q ss_pred hhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhc
Q 011104 117 VEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK 196 (493)
Q Consensus 117 ~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (493)
..+|+ +|+++|..++|.++.| + |+.++||+|||++|++|++.... .+..++||+||++||.|.++++..+..
T Consensus 106 R~lG~-rP~~VQ~~~ip~Ll~G--~--Iaem~TGeGKTLa~~LP~~l~aL---~g~~v~VvTpTreLA~Qdae~m~~l~~ 177 (922)
T 1nkt_A 106 RVLDQ-RPFDVQVMGAAALHLG--N--VAEMKTGEGKTLTCVLPAYLNAL---AGNGVHIVTVNDYLAKRDSEWMGRVHR 177 (922)
T ss_dssp HHHSC-CCCHHHHHHHHHHHTT--E--EEECCTTSCHHHHTHHHHHHHHT---TTSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHcCC-CCCHHHHHHHHhHhcC--C--EEEecCCCccHHHHHHHHHHHHH---hCCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 34798 8999999999999998 6 99999999999999999964332 345799999999999999999999999
Q ss_pred ccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHH-HHHHHcC------ccCCCCeeEEEEecchhhhcc-------
Q 011104 197 HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAK------KLGFSRLKILVYDEADHMLDE------- 262 (493)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~------~~~~~~~~~iVlDEah~l~~~------- 262 (493)
.+++++.+++++....... ...+++|+|+||++| .++|... .+.+..+.++||||||.|+.+
T Consensus 178 ~lGLsv~~i~gg~~~~~r~----~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 178 FLGLQVGVILATMTPDERR----VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HTTCCEEECCTTCCHHHHH----HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred hcCCeEEEEeCCCCHHHHH----HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 9999999998876532221 122589999999999 6777653 456788999999999999842
Q ss_pred --------cCCHHHHHHHHHHhhhc------CCCeeEE-----------------EEeeecCh---hHHHHHH--HHhc-
Q 011104 263 --------AGFRDDSLRIMKDIERS------SGHCQVL-----------------LFSATFNE---TVKNFVT--RIVK- 305 (493)
Q Consensus 263 --------~~~~~~~~~i~~~~~~~------~~~~q~v-----------------~~SAT~~~---~~~~~~~--~~~~- 305 (493)
++|...+..++..++.. ....|++ ++|||++. .+...++ .++.
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~ 333 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR 333 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc
Confidence 24677888888888621 1367888 89999875 3322221 1221
Q ss_pred cC-------ceeeec-----------------------------cccccccCce--------------------------
Q 011104 306 DY-------NQLFVK-----------------------------KEELSLESVK-------------------------- 323 (493)
Q Consensus 306 ~~-------~~~~~~-----------------------------~~~~~~~~~~-------------------------- 323 (493)
+. ..+.+. ....+...+.
T Consensus 334 d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~ 413 (922)
T 1nkt_A 334 DKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELH 413 (922)
T ss_dssp TTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHH
T ss_pred ccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHH
Confidence 11 111111 0000001111
Q ss_pred --------------------EEEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCC
Q 011104 324 --------------------QYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGA 383 (493)
Q Consensus 324 --------------------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~ 383 (493)
+..........|...+...+......+.++||||+|++.++.|+..|...|+++..+||+
T Consensus 414 ~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak 493 (922)
T 1nkt_A 414 EIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK 493 (922)
T ss_dssp HHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSS
T ss_pred HHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 000122345667877777676655557799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCCC--------------------------------------------
Q 011104 384 TIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQV-------------------------------------------- 419 (493)
Q Consensus 384 ~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~v-------------------------------------------- 419 (493)
+.+.++..+.+.|+.| .|+|||++++||+||+.+
T Consensus 494 ~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (922)
T 1nkt_A 494 YHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEA 571 (922)
T ss_dssp CHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhh
Confidence 8777777777778777 699999999999999975
Q ss_pred --------CEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCcc
Q 011104 420 --------NLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 467 (493)
Q Consensus 420 --------~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~ 467 (493)
.|||+|+.| .|...|.||+||+||.|.+|.+++|++..++
T Consensus 572 ~~V~~~GGlhVI~te~p--------es~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 572 KEVIEAGGLYVLGTERH--------ESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHTTSEEEEECSCC--------SSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred hHHHhcCCcEEEeccCC--------CCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 499999999 8999999999999999999999999987764
No 33
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.3e-43 Score=380.84 Aligned_cols=332 Identities=16% Similarity=0.180 Sum_probs=201.8
Q ss_pred CCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCC--CCeEEEEcCCHHHHHHHHHHHHHHhc
Q 011104 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLK--APQALCICPTRELAIQNLEVLRKMGK 196 (493)
Q Consensus 119 ~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (493)
.|+..|+|+|.++++.++.| ++++++++||+|||++|++|++..+..... +.++|||+||++|+.|+++.+++++.
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g--~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAING--KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp ----CCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcC--CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 57888999999999999999 999999999999999999999988865432 67899999999999999999999988
Q ss_pred ccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCcc-CCCCeeEEEEecchhhhcccCCHHHHHHHHHH
Q 011104 197 HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKL-GFSRLKILVYDEADHMLDEAGFRDDSLRIMKD 275 (493)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~ 275 (493)
..++.+..++|+....... .....+++|+|+||++|.+++....+ .+.++++||+||||++.....+...+..++..
T Consensus 322 ~~~~~v~~~~G~~~~~~~~--~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~ 399 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSV--EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (936)
T ss_dssp TTTCCEEEECCC-----CC--HHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred ccCceEEEEECCcchhhHH--HHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 7788888887776433211 11112478999999999999988776 68899999999999988742222222222222
Q ss_pred h-hhcCCCeeEEEEeeecCh-----------hHHHHHHHHhccCceeeecccc-----ccccCceEEEEeCC--------
Q 011104 276 I-ERSSGHCQVLLFSATFNE-----------TVKNFVTRIVKDYNQLFVKKEE-----LSLESVKQYKVYCP-------- 330 (493)
Q Consensus 276 ~-~~~~~~~q~v~~SAT~~~-----------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-------- 330 (493)
. ....+..|+++||||+.. .+..+...+ .. ..+...... .........+..+.
T Consensus 400 ~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L-~~-~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~ 477 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL-DI-QAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (936)
T ss_dssp HHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHH-TC-SEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHH
T ss_pred hhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhc-CC-ceeecccccHHHHHHhccCCcceEEecccccCcHHH
Confidence 1 112446899999999852 111111111 10 011100000 00000000000000
Q ss_pred --------------------------------C-----------------------------------------------
Q 011104 331 --------------------------------D----------------------------------------------- 331 (493)
Q Consensus 331 --------------------------------~----------------------------------------------- 331 (493)
.
T Consensus 478 ~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~ 557 (936)
T 4a2w_A 478 AIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 557 (936)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 0
Q ss_pred -----------------------------------------------------hHHHHHHHHHHHHHhc--ccCCcEEEE
Q 011104 332 -----------------------------------------------------ELAKVMVIRDRIFELG--EKMGQTIIF 356 (493)
Q Consensus 332 -----------------------------------------------------~~~~~~~l~~~l~~~~--~~~~~~lVf 356 (493)
...|...+.+.+.... ..+.++|||
T Consensus 558 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF 637 (936)
T 4a2w_A 558 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLF 637 (936)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEE
T ss_pred hhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEE
Confidence 0112233333333322 346899999
Q ss_pred cCChhhHHHHHHHHHhC------------CCcEEEecCCCCHHHHHHHHHHHHc-CCCcEEEEeCccccCCCCCCCCEEE
Q 011104 357 VRTKNSASALHKALKDF------------GYEVTTIMGATIQEERDKIVKEFKD-GLTQVLISTDVLARGFDQQQVNLIV 423 (493)
Q Consensus 357 ~~s~~~~~~l~~~L~~~------------~~~~~~l~~~~~~~~r~~~~~~f~~-g~~~vLv~T~~~~~Gldi~~v~~Vi 423 (493)
|+++..++.++..|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|++++||
T Consensus 638 ~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI 717 (936)
T 4a2w_A 638 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 717 (936)
T ss_dssp ESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEE
T ss_pred eCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEE
Confidence 99999999999999986 5566677899999999999999999 9999999999999999999999999
Q ss_pred EccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCc
Q 011104 424 NYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466 (493)
Q Consensus 424 ~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~ 466 (493)
+||+| .|+..|+||+|| ||. +.|.++.|++..+
T Consensus 718 ~yD~p--------~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t 750 (936)
T 4a2w_A 718 LYEYS--------GNVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (936)
T ss_dssp EESCC--------SCSHHHHCC---------CCCEEEEESCHH
T ss_pred EeCCC--------CCHHHHHHhcCC-CCC-CCCEEEEEEeCCC
Confidence 99999 788999999999 999 7899999987654
No 34
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=8e-43 Score=374.16 Aligned_cols=332 Identities=14% Similarity=0.153 Sum_probs=241.1
Q ss_pred hhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhc
Q 011104 117 VEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGK 196 (493)
Q Consensus 117 ~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (493)
..++|. |+++|.++|+.++.| ++++++||||||||++|++++...+. .+.++||++|+++|+.|+++.+..++.
T Consensus 34 ~~~~f~-l~~~Q~~aI~~il~g--~~vlv~apTGsGKTlv~~~~i~~~~~---~g~~vlvl~PtraLa~Q~~~~l~~~~~ 107 (997)
T 4a4z_A 34 RSWPFE-LDTFQKEAVYHLEQG--DSVFVAAHTSAGKTVVAEYAIAMAHR---NMTKTIYTSPIKALSNQKFRDFKETFD 107 (997)
T ss_dssp CCCSSC-CCHHHHHHHHHHHTT--CEEEEECCTTSCSHHHHHHHHHHHHH---TTCEEEEEESCGGGHHHHHHHHHTTC-
T ss_pred HhCCCC-CCHHHHHHHHHHHcC--CCEEEEECCCCcHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHHcC
Confidence 346776 899999999999999 99999999999999999998887653 456899999999999999999998754
Q ss_pred ccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhcccCCHHHHHHHHHHh
Q 011104 197 HTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDI 276 (493)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~ 276 (493)
++.+..+.|+... ...++|+|+||++|.+++......+.++++|||||||++.+ .+|...+..++..+
T Consensus 108 --~~~v~~l~G~~~~---------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d-~~~g~~~e~ii~~l 175 (997)
T 4a4z_A 108 --DVNIGLITGDVQI---------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVND-QDRGVVWEEVIIML 175 (997)
T ss_dssp ---CCEEEECSSCEE---------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCT-TCTTCCHHHHHHHS
T ss_pred --CCeEEEEeCCCcc---------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccc-cchHHHHHHHHHhc
Confidence 3555556654422 13478999999999999988877789999999999999987 47777788888777
Q ss_pred hhcCCCeeEEEEeeecChhH--HHHHHHHhccCceeeeccccccccCceEEEEe--------------------------
Q 011104 277 ERSSGHCQVLLFSATFNETV--KNFVTRIVKDYNQLFVKKEELSLESVKQYKVY-------------------------- 328 (493)
Q Consensus 277 ~~~~~~~q~v~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 328 (493)
+. ..|+++||||+++.. ..++.........+.. .......+.+++..
T Consensus 176 ~~---~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~--~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l 250 (997)
T 4a4z_A 176 PQ---HVKFILLSATVPNTYEFANWIGRTKQKNIYVIS--TPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEIL 250 (997)
T ss_dssp CT---TCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEE--CSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHH
T ss_pred cc---CCCEEEEcCCCCChHHHHHHHhcccCCceEEEe--cCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHh
Confidence 65 789999999987544 2222221111111111 11111111111110
Q ss_pred ------------------------------------------------------------------CCChHHHHHHHHHH
Q 011104 329 ------------------------------------------------------------------CPDELAKVMVIRDR 342 (493)
Q Consensus 329 ------------------------------------------------------------------~~~~~~~~~~l~~~ 342 (493)
..........+...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 330 (997)
T 4a4z_A 251 NGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNY 330 (997)
T ss_dssp C-----------------------------------------------------------------CCCCTTHHHHHHHH
T ss_pred hccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence 00011123333333
Q ss_pred HHHhcccCCcEEEEcCChhhHHHHHHHHHhCCC---------------------------------------cEEEecCC
Q 011104 343 IFELGEKMGQTIIFVRTKNSASALHKALKDFGY---------------------------------------EVTTIMGA 383 (493)
Q Consensus 343 l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~---------------------------------------~~~~l~~~ 383 (493)
+... ...++||||++++.|+.++..|...++ .+..+||+
T Consensus 331 l~~~--~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~g 408 (997)
T 4a4z_A 331 LRKR--ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGG 408 (997)
T ss_dssp HHHT--TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTT
T ss_pred HHhC--CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCC
Confidence 3322 347999999999999999999987665 57999999
Q ss_pred CCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCCCCEEEEccCCC-CCCCCCCCCcccccccccccccCC--CcceEEE
Q 011104 384 TIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPV-KHGKHLEPDCEVYLHRIGRAGRFG--RKGVVFN 460 (493)
Q Consensus 384 ~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~v~~Vi~~~~p~-~~~~~~~~s~~~y~qr~GR~~R~g--~~g~~i~ 460 (493)
|++.+|..+++.|++|.++|||||+++++|||+|+ ..||+++.|. .+..+.+.|..+|+||+|||||.| ..|.|++
T Consensus 409 l~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~ 487 (997)
T 4a4z_A 409 LLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIV 487 (997)
T ss_dssp SCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEE
Confidence 99999999999999999999999999999999999 5666666553 111222348999999999999988 5677887
Q ss_pred Eee-CCccHHHHHHH
Q 011104 461 LLM-DGDDMIIMEKI 474 (493)
Q Consensus 461 l~~-~~~~~~~~~~i 474 (493)
++. +..+...++.+
T Consensus 488 l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 488 MAYNSPLSIATFKEV 502 (997)
T ss_dssp ECCSSCCCHHHHHHH
T ss_pred ecCCCcchHHHHHHH
Confidence 773 22244444433
No 35
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.4e-42 Score=351.72 Aligned_cols=323 Identities=22% Similarity=0.285 Sum_probs=236.5
Q ss_pred CCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCcee
Q 011104 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS 202 (493)
Q Consensus 123 ~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~ 202 (493)
.|+|+|..+++.++.+ +++++++||+|||++++++++..+. ..+.++||+||+++|+.||.+.+.++.......+
T Consensus 9 ~l~~~Q~~~i~~~~~~---~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v 83 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET---NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKI 83 (494)
T ss_dssp CCCHHHHHHHHHGGGS---CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGE
T ss_pred CccHHHHHHHHHHhhC---CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhhe
Confidence 5899999999999986 8999999999999999999887764 3466899999999999999999999875434455
Q ss_pred eEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhcccCCHHHHHHHHHHhhhcCCC
Q 011104 203 ECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH 282 (493)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~ 282 (493)
....|+....... .....++|+|+||+.|...+....+.+.++++||+||||++... ..... ++..+....+.
T Consensus 84 ~~~~g~~~~~~~~---~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~-~~~~~---~~~~~~~~~~~ 156 (494)
T 1wp9_A 84 VALTGEKSPEERS---KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGN-YAYVF---IAREYKRQAKN 156 (494)
T ss_dssp EEECSCSCHHHHH---HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTT-CHHHH---HHHHHHHHCSS
T ss_pred EEeeCCcchhhhh---hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCC-CcHHH---HHHHHHhcCCC
Confidence 5565554322110 01124689999999999999888788899999999999998863 22222 33333333446
Q ss_pred eeEEEEeeecChhHH---HHHHHHhccCceeeecccc-----ccccCceEEEEeCC------------------------
Q 011104 283 CQVLLFSATFNETVK---NFVTRIVKDYNQLFVKKEE-----LSLESVKQYKVYCP------------------------ 330 (493)
Q Consensus 283 ~q~v~~SAT~~~~~~---~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~------------------------ 330 (493)
.++++||||+..... .++..+............. .............+
T Consensus 157 ~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (494)
T 1wp9_A 157 PLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAET 236 (494)
T ss_dssp CCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999974433 2222221111110000000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 011104 331 -------------------------------------------------------------------------------- 330 (493)
Q Consensus 331 -------------------------------------------------------------------------------- 330 (493)
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 316 (494)
T 1wp9_A 237 GLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKAS 316 (494)
T ss_dssp TSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred ccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhh
Confidence
Q ss_pred -----------------------ChHHHHHHHHHHHHHhc--ccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecC---
Q 011104 331 -----------------------DELAKVMVIRDRIFELG--EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMG--- 382 (493)
Q Consensus 331 -----------------------~~~~~~~~l~~~l~~~~--~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~--- 382 (493)
....|...+.+.+.... ..+.++||||+++..++.+++.|...++.+..+||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~ 396 (494)
T 1wp9_A 317 KEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQAS 396 (494)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSC
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccc
Confidence 11123334444444432 35789999999999999999999999999999999
Q ss_pred -----CCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcce
Q 011104 383 -----ATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGV 457 (493)
Q Consensus 383 -----~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~ 457 (493)
+|+..+|..+++.|++|..+|||||+++++|+|+|++++||+|++| .++..|+||+||+||.|+ |.
T Consensus 397 ~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~--------~~~~~~~Qr~GR~~R~g~-g~ 467 (494)
T 1wp9_A 397 KENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPV--------PSAIRSIQRRGRTGRHMP-GR 467 (494)
T ss_dssp C-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCC--------HHHHHHHHHHTTSCSCCC-SE
T ss_pred ccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCC--------CCHHHHHHHHhhccCCCC-ce
Confidence 9999999999999999999999999999999999999999999999 678899999999999997 99
Q ss_pred EEEEeeCCc
Q 011104 458 VFNLLMDGD 466 (493)
Q Consensus 458 ~i~l~~~~~ 466 (493)
++.|+++++
T Consensus 468 ~~~l~~~~t 476 (494)
T 1wp9_A 468 VIILMAKGT 476 (494)
T ss_dssp EEEEEETTS
T ss_pred EEEEEecCC
Confidence 999999875
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.5e-43 Score=368.16 Aligned_cols=326 Identities=22% Similarity=0.233 Sum_probs=239.9
Q ss_pred CHHHHHHHHhhCCCCCCchHHHhhhhhhcCC----CCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHH
Q 011104 108 SPELLKGLYVEMKFQKPSKIQAISLPMILTP----PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (493)
Q Consensus 108 ~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~----~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L 183 (493)
...+++.+...++| .||++|.++|+.++.+ ..++++++|+||||||++|++|++..+. .+.+++|++||++|
T Consensus 354 ~~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~---~g~qvlvlaPtr~L 429 (780)
T 1gm5_A 354 EGKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE---AGFQTAFMVPTSIL 429 (780)
T ss_dssp CTHHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH---HTSCEEEECSCHHH
T ss_pred chHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCcHHH
Confidence 34566666666999 8999999999999764 1258999999999999999999998774 35789999999999
Q ss_pred HHHHHHHHHHHhcccCceeeEeecCCCCCccc--ccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhc
Q 011104 184 AIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLD 261 (493)
Q Consensus 184 a~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~ 261 (493)
|.|+++.+.++....++.+..++|+....... ......+.++|+|+||+.|.+ .+.+.++++||+||+|++..
T Consensus 430 a~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~ 504 (780)
T 1gm5_A 430 AIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGV 504 (780)
T ss_dssp HHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC--
T ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhH
Confidence 99999999999888888888887776543211 111122358999999998754 45688999999999998643
Q ss_pred ccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeCCChHHHHHHHHH
Q 011104 262 EAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRD 341 (493)
Q Consensus 262 ~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 341 (493)
. . . ..+.......++++||||+.+..... ....................+........ ....+..
T Consensus 505 ~----q--r---~~l~~~~~~~~vL~mSATp~p~tl~~--~~~g~~~~s~i~~~p~~r~~i~~~~~~~~----~~~~l~~ 569 (780)
T 1gm5_A 505 K----Q--R---EALMNKGKMVDTLVMSATPIPRSMAL--AFYGDLDVTVIDEMPPGRKEVQTMLVPMD----RVNEVYE 569 (780)
T ss_dssp ------------CCCCSSSSCCCEEEEESSCCCHHHHH--HHTCCSSCEEECCCCSSCCCCEECCCCSS----THHHHHH
T ss_pred H----H--H---HHHHHhCCCCCEEEEeCCCCHHHHHH--HHhCCcceeeeeccCCCCcceEEEEeccc----hHHHHHH
Confidence 1 1 1 12223334689999999987655432 22333222222111111122222221111 2233344
Q ss_pred HHHHhcccCCcEEEEcCChh--------hHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCcc
Q 011104 342 RIFELGEKMGQTIIFVRTKN--------SASALHKALKD---FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL 410 (493)
Q Consensus 342 ~l~~~~~~~~~~lVf~~s~~--------~~~~l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 410 (493)
.+......+++++|||++++ .+..+++.|.. .++.+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 570 ~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vi 649 (780)
T 1gm5_A 570 FVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVI 649 (780)
T ss_dssp HHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCC
T ss_pred HHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence 45555666889999999764 47788888887 47899999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeC
Q 011104 411 ARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMD 464 (493)
Q Consensus 411 ~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~ 464 (493)
++|+|+|++++||++++|. .+...|.||+||+||.|+.|.|++++.+
T Consensus 650 e~GIDiP~v~~VIi~d~~r-------~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 650 EVGIDVPRANVMVIENPER-------FGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp CSCSCCTTCCEEEBCSCSS-------SCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred CccccCCCCCEEEEeCCCC-------CCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 9999999999999999984 3577899999999999999999998873
No 37
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=8e-44 Score=363.98 Aligned_cols=316 Identities=16% Similarity=0.145 Sum_probs=230.5
Q ss_pred CCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHH
Q 011104 105 LNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELA 184 (493)
Q Consensus 105 ~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La 184 (493)
+++++.+++.+.. ....|+|+|+.+++.++.| ++++++|+||||||++|++|+++.+.. .+.++||++||++||
T Consensus 155 l~~~~~~~~~l~~--~~~~~lpiq~~~i~~l~~g--~dvlv~a~TGSGKT~~~~lpil~~l~~--~~~~vLvl~PtreLa 228 (618)
T 2whx_A 155 VTKSGDYVSAITQ--AERIGEPDYEVDEDIFRKK--RLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVA 228 (618)
T ss_dssp -------CEECBC--CCCCCCCCCCCCGGGGSTT--CEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHH
T ss_pred ccchHHHHHHHhh--ccccCCCccccCHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEcChHHHH
Confidence 5677776666643 3588999999999999999 999999999999999999999987754 457899999999999
Q ss_pred HHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhcccC
Q 011104 185 IQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAG 264 (493)
Q Consensus 185 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~~~ 264 (493)
.|+++.+..+ .+.+.. .. .......+..+.++|.+.|...+.... .+.++++|||||||++ + .+
T Consensus 229 ~Qi~~~l~~~------~v~~~~--~~-----l~~~~tp~~~i~~~t~~~l~~~l~~~~-~l~~~~~iViDEah~~-~-~~ 292 (618)
T 2whx_A 229 AEMEEALRGL------PIRYQT--PA-----VKSDHTGREIVDLMCHATFTTRLLSST-RVPNYNLIVMDEAHFT-D-PC 292 (618)
T ss_dssp HHHHHHTTTS------CEEECC--TT-----SSCCCCSSSCEEEEEHHHHHHHHHHCS-SCCCCSEEEEESTTCC-S-HH
T ss_pred HHHHHHhcCC------ceeEec--cc-----ceeccCCCceEEEEChHHHHHHHhccc-cccCCeEEEEECCCCC-C-cc
Confidence 9999877622 222111 10 011222345688899998887776653 4889999999999998 3 46
Q ss_pred CHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeCCChHHHHHHHHHHHH
Q 011104 265 FRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIF 344 (493)
Q Consensus 265 ~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 344 (493)
|...+..++..+.. ++.|+++||||++..+..+.. .++..+.+... .+... ...+...+.
T Consensus 293 ~~~~~~~i~~~l~~--~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-------------~~~~~--~~~ll~~l~ 352 (618)
T 2whx_A 293 SVAARGYISTRVEM--GEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-------------IPERS--WNTGFDWIT 352 (618)
T ss_dssp HHHHHHHHHHHHHH--TSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-------------CCSSC--CSSSCHHHH
T ss_pred HHHHHHHHHHHhcc--cCccEEEEECCCchhhhhhhc---cCCceeeeccc-------------CCHHH--HHHHHHHHH
Confidence 77777777766642 368999999999876543221 12222222111 01000 001111122
Q ss_pred HhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCCCCEE--
Q 011104 345 ELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLI-- 422 (493)
Q Consensus 345 ~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~v~~V-- 422 (493)
. ..+++||||++++.++.+++.|+..++.+..+||. +|.++++.|++|+.+|||||+++++|||+| +++|
T Consensus 353 ~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId 424 (618)
T 2whx_A 353 D---YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVID 424 (618)
T ss_dssp H---CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEE
T ss_pred h---CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEE
Confidence 2 36799999999999999999999999999999995 688899999999999999999999999997 9998
Q ss_pred ------------------EEccCCCCCCCCCCCCcccccccccccccCCC-cceEEEEee--CCccHHHHHHHHHHh
Q 011104 423 ------------------VNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR-KGVVFNLLM--DGDDMIIMEKIERYF 478 (493)
Q Consensus 423 ------------------i~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~-~g~~i~l~~--~~~~~~~~~~i~~~~ 478 (493)
|+|+.| .+..+|+||+||+||.|. .|.|++|++ ..++...+..+++.+
T Consensus 425 ~g~~~~P~~~~~~~~~~~i~~d~P--------~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 425 PRRCLKPVILTDGPERVILAGPIP--------VTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEE--------CCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred CcceecceecccCCCceEEccccc--------CCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 555556 789999999999999964 999999997 234555666676654
No 38
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.5e-43 Score=372.13 Aligned_cols=328 Identities=19% Similarity=0.238 Sum_probs=218.9
Q ss_pred CCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCC---CCCCeEEEEcCCHHHHHHH-HHHHHHHhccc
Q 011104 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN---LKAPQALCICPTRELAIQN-LEVLRKMGKHT 198 (493)
Q Consensus 123 ~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~Pt~~La~q~-~~~~~~~~~~~ 198 (493)
.|+|+|..+++.++.| +++++++|||+|||++|++|++..+... ..+.++|||+|+++|+.|+ .+.+++++..
T Consensus 7 ~l~~~Q~~~i~~il~g--~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~- 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEG--KNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK- 83 (699)
T ss_dssp CCCHHHHHHHHHHHSS--CCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-
T ss_pred CccHHHHHHHHHHHhC--CCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-
Confidence 5999999999999998 8999999999999999999998876432 2236899999999999999 9999998865
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHH------HcCccCCCCeeEEEEecchhhhcccCCHHHHHHH
Q 011104 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWM------SAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRI 272 (493)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l------~~~~~~~~~~~~iVlDEah~l~~~~~~~~~~~~i 272 (493)
++.+..+.|+....... ......++|+|+||++|.+.+ ....+.+.++++|||||||++.....+...+..+
T Consensus 84 ~~~v~~~~g~~~~~~~~--~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISF--PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 161 (699)
T ss_dssp TSCEEEEC----CCCCH--HHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHH
T ss_pred CceEEEEeCCcchhhHH--HhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHH
Confidence 46666666665433211 111135799999999999988 4445678899999999999986543343333333
Q ss_pred HHH-hhhcC---------CCeeEEEEeeecChh-------HHHHHHHHhc--cCceeeecccc------ccccCceEEEE
Q 011104 273 MKD-IERSS---------GHCQVLLFSATFNET-------VKNFVTRIVK--DYNQLFVKKEE------LSLESVKQYKV 327 (493)
Q Consensus 273 ~~~-~~~~~---------~~~q~v~~SAT~~~~-------~~~~~~~~~~--~~~~~~~~~~~------~~~~~~~~~~~ 327 (493)
+.. +.... +..++++||||+... ....+..+.. ....+...... ........+..
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~ 241 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAI 241 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEE
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEE
Confidence 222 11111 467999999998862 2211111111 01001000000 00000001100
Q ss_pred eCCC----------------------------------------------------------------------------
Q 011104 328 YCPD---------------------------------------------------------------------------- 331 (493)
Q Consensus 328 ~~~~---------------------------------------------------------------------------- 331 (493)
....
T Consensus 242 ~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (699)
T 4gl2_A 242 ADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMID 321 (699)
T ss_dssp EC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000
Q ss_pred ---------------------------------------------------------hHHHHHHHHHHHHHhcc--c-CC
Q 011104 332 ---------------------------------------------------------ELAKVMVIRDRIFELGE--K-MG 351 (493)
Q Consensus 332 ---------------------------------------------------------~~~~~~~l~~~l~~~~~--~-~~ 351 (493)
...+...+.+.+..... . .+
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~ 401 (699)
T 4gl2_A 322 AYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESA 401 (699)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCC
Confidence 00000111111222111 1 68
Q ss_pred cEEEEcCChhhHHHHHHHHHhC------CCcEEEecCC--------CCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCC
Q 011104 352 QTIIFVRTKNSASALHKALKDF------GYEVTTIMGA--------TIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ 417 (493)
Q Consensus 352 ~~lVf~~s~~~~~~l~~~L~~~------~~~~~~l~~~--------~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~ 417 (493)
++||||+++..++.+++.|... |+.+..+||+ |++.+|..+++.|++|+.+|||||+++++|||+|
T Consensus 402 ~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip 481 (699)
T 4gl2_A 402 RGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIK 481 (699)
T ss_dssp CEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCC
T ss_pred cEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccc
Confidence 9999999999999999999987 8999999999 9999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCc
Q 011104 418 QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466 (493)
Q Consensus 418 ~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~ 466 (493)
++++||+||+| .|+..|+||+||+||.| .+++++...+
T Consensus 482 ~v~~VI~~d~p--------~s~~~~~Qr~GRArr~g---~~~~l~~~~~ 519 (699)
T 4gl2_A 482 ECNIVIRYGLV--------TNEIAMVQARGRARADE---STYVLVAHSG 519 (699)
T ss_dssp SCCCCEEESCC--------CCHHHHHHHHTTSCSSS---CEEEEEEESS
T ss_pred cCCEEEEeCCC--------CCHHHHHHHcCCCCCCC---ceEEEEEeCC
Confidence 99999999999 78999999999976554 5555555443
No 39
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1e-41 Score=370.99 Aligned_cols=329 Identities=17% Similarity=0.197 Sum_probs=250.4
Q ss_pred CCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcC----CCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCC
Q 011104 105 LNLSPELLKGLYVEMKFQKPSKIQAISLPMILT----PPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (493)
Q Consensus 105 ~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~----~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 180 (493)
++.++.+.+.+...++|. |||+|.++++.++. |..++++++++||+|||++|+.+++..+. .+.+++|++||
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---~g~~vlvlvPt 661 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHKQVAVLVPT 661 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTCEEEEECSS
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---hCCeEEEEech
Confidence 456677777777778887 79999999999986 52239999999999999999988877653 45699999999
Q ss_pred HHHHHHHHHHHHHHhcccCceeeEeecCCCCCccc--ccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchh
Q 011104 181 RELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (493)
Q Consensus 181 ~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~ 258 (493)
++|+.|+++.+.++....++.+..+.+..+..... ......+.++|+|+||+.|. ..+.+.++++||+||+|+
T Consensus 662 ~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~ 736 (1151)
T 2eyq_A 662 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHR 736 (1151)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGG
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHh
Confidence 99999999999988877777776666554332211 11112235899999997663 345689999999999998
Q ss_pred hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeCCChHHHHHH
Q 011104 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMV 338 (493)
Q Consensus 259 l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (493)
+.. ....+++.+.. +.++++||||+.+.........+.++..+... ......+..+...... ..
T Consensus 737 ~g~------~~~~~l~~l~~---~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~--~~~r~~i~~~~~~~~~-~~---- 800 (1151)
T 2eyq_A 737 FGV------RHKERIKAMRA---NVDILTLTATPIPRTLNMAMSGMRDLSIIATP--PARRLAVKTFVREYDS-MV---- 800 (1151)
T ss_dssp SCH------HHHHHHHHHHT---TSEEEEEESSCCCHHHHHHHTTTSEEEECCCC--CCBCBCEEEEEEECCH-HH----
T ss_pred cCh------HHHHHHHHhcC---CCCEEEEcCCCChhhHHHHHhcCCCceEEecC--CCCccccEEEEecCCH-HH----
Confidence 532 23455555554 67999999998877665554444433322211 1112233444333332 11
Q ss_pred HHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCC
Q 011104 339 IRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF--GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQ 416 (493)
Q Consensus 339 l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi 416 (493)
+...+......+++++|||++++.++.+++.|+.. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 801 i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDi 880 (1151)
T 2eyq_A 801 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 880 (1151)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC
T ss_pred HHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecc
Confidence 12223333445789999999999999999999987 8899999999999999999999999999999999999999999
Q ss_pred CCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCC
Q 011104 417 QQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 465 (493)
Q Consensus 417 ~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~ 465 (493)
|++++||+++.+. .++.+|.||+||+||.|+.|.|++++.+.
T Consensus 881 p~v~~VIi~~~~~-------~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 881 PTANTIIIERADH-------FGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TTEEEEEETTTTS-------SCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred cCCcEEEEeCCCC-------CCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 9999999998853 46788999999999999999999888654
No 40
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.6e-42 Score=363.01 Aligned_cols=342 Identities=18% Similarity=0.234 Sum_probs=246.3
Q ss_pred CCCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhcc--CCCCCCCeEE
Q 011104 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV--DPNLKAPQAL 175 (493)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l--~~~~~~~~~l 175 (493)
+..+|.++++++.+.+.+.. .+ ..|+++|+.+|+.++.+ +++++++||||||||+ ++|++... .....+.+++
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~-r~-~lP~~~q~~~i~~~l~~-~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~il 144 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKI-RR-ELPVHAQRDEFLKLYQN-NQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVA 144 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHH-HT-TSGGGGGHHHHHHHHHH-CSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEE
T ss_pred CCCCccccCCCHHHHHHHHH-hh-cCChHHHHHHHHHHHhC-CCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEE
Confidence 35689999999999999986 56 78999999999999876 2789999999999999 44544221 1112256799
Q ss_pred EEcCCHHHHHHHHHHHHHHh-cccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEe
Q 011104 176 CICPTRELAIQNLEVLRKMG-KHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYD 254 (493)
Q Consensus 176 il~Pt~~La~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlD 254 (493)
|++|+++|+.|+++.+.... ...+..+...... .......++|+|+|||++.+.+.... .+.++++||||
T Consensus 145 vl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~--------~~~~~~~~~I~v~T~G~l~r~l~~~~-~l~~~~~lIlD 215 (773)
T 2xau_A 145 CTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRF--------ENKTSNKTILKYMTDGMLLREAMEDH-DLSRYSCIILD 215 (773)
T ss_dssp EEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETT--------EEECCTTCSEEEEEHHHHHHHHHHST-TCTTEEEEEEC
T ss_pred ecCchHHHHHHHHHHHHHHhCCchhheecceecc--------ccccCCCCCEEEECHHHHHHHHhhCc-cccCCCEEEec
Confidence 99999999999988665443 2222222221111 11122467899999999999887754 48899999999
Q ss_pred cchh-hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeCCChH
Q 011104 255 EADH-MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDEL 333 (493)
Q Consensus 255 Eah~-l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (493)
|+|. .++. +.+..+++.+....++.|+++||||++.. . +..++.....+.+.... ..+.+++...+...
T Consensus 216 Eah~R~ld~----d~~~~~l~~l~~~~~~~~iIl~SAT~~~~--~-l~~~~~~~~vi~v~gr~---~pv~~~~~~~~~~~ 285 (773)
T 2xau_A 216 EAHERTLAT----DILMGLLKQVVKRRPDLKIIIMSATLDAE--K-FQRYFNDAPLLAVPGRT---YPVELYYTPEFQRD 285 (773)
T ss_dssp SGGGCCHHH----HHHHHHHHHHHHHCTTCEEEEEESCSCCH--H-HHHHTTSCCEEECCCCC---CCEEEECCSSCCSC
T ss_pred Cccccccch----HHHHHHHHHHHHhCCCceEEEEeccccHH--H-HHHHhcCCCcccccCcc---cceEEEEecCCchh
Confidence 9996 4431 23344455554444578999999999643 2 34455554444443332 23455554444322
Q ss_pred HHHHHHHHHHHHh--cccCCcEEEEcCChhhHHHHHHHHHh-----------CCCcEEEecCCCCHHHHHHHHHHHH---
Q 011104 334 AKVMVIRDRIFEL--GEKMGQTIIFVRTKNSASALHKALKD-----------FGYEVTTIMGATIQEERDKIVKEFK--- 397 (493)
Q Consensus 334 ~~~~~l~~~l~~~--~~~~~~~lVf~~s~~~~~~l~~~L~~-----------~~~~~~~l~~~~~~~~r~~~~~~f~--- 397 (493)
........+... ....+++||||+++.+++.++..|.. .++.+..+||+|++.+|..+++.|+
T Consensus 286 -~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~ 364 (773)
T 2xau_A 286 -YLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESH 364 (773)
T ss_dssp -HHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCS
T ss_pred -HHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhccccc
Confidence 121212222221 12478999999999999999999985 5788999999999999999999999
Q ss_pred --cCCCcEEEEeCccccCCCCCCCCEEEEccCCCC-------CCCCC---CCCcccccccccccccCCCcceEEEEeeCC
Q 011104 398 --DGLTQVLISTDVLARGFDQQQVNLIVNYDPPVK-------HGKHL---EPDCEVYLHRIGRAGRFGRKGVVFNLLMDG 465 (493)
Q Consensus 398 --~g~~~vLv~T~~~~~Gldi~~v~~Vi~~~~p~~-------~~~~~---~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~ 465 (493)
+|..+|||||+++++|||+|++++||+++++.. +...+ +.|..+|+||+|||||. ..|.|++|+++.
T Consensus 365 ~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~ 443 (773)
T 2xau_A 365 NGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 443 (773)
T ss_dssp SSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHH
T ss_pred CCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHH
Confidence 999999999999999999999999999887210 00000 17899999999999999 799999999743
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7.5e-42 Score=381.84 Aligned_cols=351 Identities=15% Similarity=0.130 Sum_probs=252.2
Q ss_pred CCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHH
Q 011104 107 LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQ 186 (493)
Q Consensus 107 ~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q 186 (493)
+.++..++++. .+|..++|+|.++++.++.+. ++++++||||||||++|.+|++..+... .+.+++|++|+++||.|
T Consensus 911 L~~~~~e~l~~-~~f~~fnpiQ~q~~~~l~~~~-~nvlv~APTGSGKTliaelail~~l~~~-~~~kavyi~P~raLa~q 987 (1724)
T 4f92_B 911 LRNSAFESLYQ-DKFPFFNPIQTQVFNTVYNSD-DNVFVGAPTGSGKTICAEFAILRMLLQS-SEGRCVYITPMEALAEQ 987 (1724)
T ss_dssp SCCHHHHTTTT-TTCSBCCHHHHHHHHHHHSCC-SCEEEECCTTSCCHHHHHHHHHHHHHHC-TTCCEEEECSCHHHHHH
T ss_pred ccCHHHHHHHH-hcCCCCCHHHHHHHHHHhcCC-CcEEEEeCCCCCchHHHHHHHHHHHHhC-CCCEEEEEcChHHHHHH
Confidence 55677888876 789999999999999998763 7899999999999999999999888653 35589999999999999
Q ss_pred HHHHHHH-HhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCc--cCCCCeeEEEEecchhhhccc
Q 011104 187 NLEVLRK-MGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK--LGFSRLKILVYDEADHMLDEA 263 (493)
Q Consensus 187 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~--~~~~~~~~iVlDEah~l~~~~ 263 (493)
.++.+.+ ++..+++.+....|+...... ....++|+||||+++..++.+.. ..+.++++||+||+|.+.+
T Consensus 988 ~~~~~~~~f~~~~g~~V~~ltGd~~~~~~-----~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-- 1060 (1724)
T 4f92_B 988 VYMDWYEKFQDRLNKKVVLLTGETSTDLK-----LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-- 1060 (1724)
T ss_dssp HHHHHHHHHTTTSCCCEEECCSCHHHHHH-----HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS--
T ss_pred HHHHHHHHhchhcCCEEEEEECCCCcchh-----hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC--
Confidence 9998865 566678887777665432211 11247899999999987776532 2367899999999998876
Q ss_pred CCHHHHHHHHHHhh----hcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeCC--ChHHHHH
Q 011104 264 GFRDDSLRIMKDIE----RSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCP--DELAKVM 337 (493)
Q Consensus 264 ~~~~~~~~i~~~~~----~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 337 (493)
.....+..++..+. ....++|+|+||||+++ ..++...+......++.......+..+..+..... .......
T Consensus 1061 ~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~ 1139 (1724)
T 4f92_B 1061 ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLL 1139 (1724)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHH
T ss_pred CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhh
Confidence 34555555555443 23457899999999985 33434333333333333333333334444333222 2211111
Q ss_pred ----HHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC----------------------------------CCcEEE
Q 011104 338 ----VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF----------------------------------GYEVTT 379 (493)
Q Consensus 338 ----~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~----------------------------------~~~~~~ 379 (493)
.+...+.. ....+++||||+|+..|+.++..|... ...+..
T Consensus 1140 ~~~~~~~~~i~~-~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~ 1218 (1724)
T 4f92_B 1140 SMAKPVYHAITK-HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGY 1218 (1724)
T ss_dssp TTHHHHHHHHHH-HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEE
T ss_pred hhcchHHHHHHH-hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEE
Confidence 12222222 334789999999999999888766421 235889
Q ss_pred ecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCCCCEEEEccCCCCCCC--CCCCCcccccccccccccCCC--c
Q 011104 380 IMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGK--HLEPDCEVYLHRIGRAGRFGR--K 455 (493)
Q Consensus 380 l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~--~~~~s~~~y~qr~GR~~R~g~--~ 455 (493)
+|++|++.+|..+.+.|++|.++|||||+++++|+|+|..++||.....+.+.. ..+.++.+|+||+|||||.|. .
T Consensus 1219 hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 1298 (1724)
T 4f92_B 1219 LHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDE 1298 (1724)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSC
T ss_pred ECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCc
Confidence 999999999999999999999999999999999999999999885221111110 112578899999999999987 6
Q ss_pred ceEEEEeeCCccHH
Q 011104 456 GVVFNLLMDGDDMI 469 (493)
Q Consensus 456 g~~i~l~~~~~~~~ 469 (493)
|.|++++.+.+...
T Consensus 1299 G~avll~~~~~~~~ 1312 (1724)
T 4f92_B 1299 GRCVIMCQGSKKDF 1312 (1724)
T ss_dssp EEEEEEEEGGGHHH
T ss_pred eEEEEEecchHHHH
Confidence 89998887654433
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=8.3e-43 Score=346.65 Aligned_cols=288 Identities=17% Similarity=0.167 Sum_probs=211.3
Q ss_pred CCCCCchHHHhhhhhhcCCCCccE-EEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhccc
Q 011104 120 KFQKPSKIQAISLPMILTPPYRNL-IAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (493)
Q Consensus 120 g~~~~~~~Q~~~i~~il~~~~~~v-iv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (493)
|+.+|+|+|+ +||.++.+ +++ +++||||||||++|++|++..+.. .++++||++||++||.|+++.+..
T Consensus 1 G~~q~~~iq~-~i~~~l~~--~~~~lv~a~TGsGKT~~~~~~~l~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~g----- 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRK--KRLTIMDLHPGAGKTKRILPSIVREALL--RRLRTLILAPTRVVAAEMEEALRG----- 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGST--TCEEEECCCTTSSCCTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTT-----
T ss_pred CCCCCCCcHH-HHHHHHhc--CCeEEEECCCCCCHhhHHHHHHHHHHHh--cCCcEEEECCCHHHHHHHHHHhcC-----
Confidence 6789999986 79999998 565 999999999999999999876543 457899999999999999987752
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhcccCCHHHHHHHHHHhhh
Q 011104 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278 (493)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~ 278 (493)
..+.+..... ......+..|.++|++.|.+.+... ..+.++++|||||||++.. .+.. ...++... .
T Consensus 71 -~~v~~~~~~~-------~~~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~~~--~~~~-~~~~~~~~-~ 137 (451)
T 2jlq_A 71 -LPIRYQTPAV-------KSDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFTDP--CSVA-ARGYISTR-V 137 (451)
T ss_dssp -SCEEECCTTC-------SCCCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCCSH--HHHH-HHHHHHHH-H
T ss_pred -ceeeeeeccc-------cccCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccCCc--chHH-HHHHHHHh-h
Confidence 2221111111 0122334679999999998888765 4488999999999998721 2222 22222221 1
Q ss_pred cCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcC
Q 011104 279 SSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVR 358 (493)
Q Consensus 279 ~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~ 358 (493)
..++.|+++||||++..+..+ +...+..+.... ..+.. .+ . .. ...+.. ..+++||||+
T Consensus 138 ~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~-~~p~~---~~----~---~~----~~~l~~---~~~~~lVF~~ 196 (451)
T 2jlq_A 138 EMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIER-EIPER---SW----N---TG----FDWITD---YQGKTVWFVP 196 (451)
T ss_dssp HTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEEC-CCCSS---CC----S---SS----CHHHHH---CCSCEEEECS
T ss_pred cCCCceEEEEccCCCccchhh---hcCCCceEecCc-cCCch---hh----H---HH----HHHHHh---CCCCEEEEcC
Confidence 234689999999998754322 222232222211 00000 00 0 01 111222 2579999999
Q ss_pred ChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCCCCEEEEcc------------
Q 011104 359 TKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYD------------ 426 (493)
Q Consensus 359 s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~v~~Vi~~~------------ 426 (493)
++++++.++..|+..++.+..+|+.+. ..+++.|++|+.+|||||+++++|+|+|+ ++||+|+
T Consensus 197 s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~ 271 (451)
T 2jlq_A 197 SIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGP 271 (451)
T ss_dssp SHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSS
T ss_pred CHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccc
Confidence 999999999999999999999999864 57899999999999999999999999999 9999998
Q ss_pred --------CCCCCCCCCCCCcccccccccccccCCC-cceEEEEeeC
Q 011104 427 --------PPVKHGKHLEPDCEVYLHRIGRAGRFGR-KGVVFNLLMD 464 (493)
Q Consensus 427 --------~p~~~~~~~~~s~~~y~qr~GR~~R~g~-~g~~i~l~~~ 464 (493)
.| .+..+|+||+||+||.|+ .|.|++|+..
T Consensus 272 ~~l~~~~~~p--------~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 272 ERVILAGPIP--------VTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp CEEEEEEEEE--------CCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred ceeeeccccc--------CCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 77 789999999999999998 8899877643
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.6e-41 Score=377.52 Aligned_cols=344 Identities=19% Similarity=0.258 Sum_probs=249.1
Q ss_pred CCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCC--------CCCCCeEEEEcCCHHHHHHHHHHH
Q 011104 120 KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP--------NLKAPQALCICPTRELAIQNLEVL 191 (493)
Q Consensus 120 g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~--------~~~~~~~lil~Pt~~La~q~~~~~ 191 (493)
||+.++++|++++|.++.++ +|++++||||||||++|.++++..+.. ...+.++|+++|+++||.|+++.+
T Consensus 76 g~~~ln~iQs~~~~~al~~~-~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETD-ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCC-CCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCC-CcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 89999999999999998753 899999999999999999999988743 234668999999999999999999
Q ss_pred HHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCc--cCCCCeeEEEEecchhhhcccCCHHHH
Q 011104 192 RKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK--LGFSRLKILVYDEADHMLDEAGFRDDS 269 (493)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~--~~~~~~~~iVlDEah~l~~~~~~~~~~ 269 (493)
.+.....++.+...+|+..... .....++|+||||+++..++.+.. ..+.++++||+||+|.+.+ .....+
T Consensus 155 ~~~~~~~gi~V~~~tGd~~~~~-----~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d--~RG~~l 227 (1724)
T 4f92_B 155 GKRLATYGITVAELTGDHQLCK-----EEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD--DRGPVL 227 (1724)
T ss_dssp HHHHTTTTCCEEECCSSCSSCC-----TTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS--TTHHHH
T ss_pred HHHHhhCCCEEEEEECCCCCCc-----cccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC--ccHHHH
Confidence 9988888998888877664432 122358999999999876665432 2368899999999997765 344445
Q ss_pred HHHHHHh----hhcCCCeeEEEEeeecChhHHHHHHHHhcc--CceeeeccccccccCceEEEEeCCC--hHHHHHHHHH
Q 011104 270 LRIMKDI----ERSSGHCQVLLFSATFNETVKNFVTRIVKD--YNQLFVKKEELSLESVKQYKVYCPD--ELAKVMVIRD 341 (493)
Q Consensus 270 ~~i~~~~----~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 341 (493)
..++.++ ....+++|+|++|||+++ ..++ ..++.. +..+........+..+.+.++.... .......+..
T Consensus 228 E~~l~rl~~~~~~~~~~~riI~LSATl~N-~~dv-A~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~ 305 (1724)
T 4f92_B 228 EALVARAIRNIEMTQEDVRLIGLSATLPN-YEDV-ATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNE 305 (1724)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEEEECSCTT-HHHH-HHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEecccCC-HHHH-HHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHH
Confidence 4444433 234557899999999984 3333 333332 1122222233333444544433322 2222222222
Q ss_pred HHHH---hcccCCcEEEEcCChhhHHHHHHHHHhC-------------------------------------CCcEEEec
Q 011104 342 RIFE---LGEKMGQTIIFVRTKNSASALHKALKDF-------------------------------------GYEVTTIM 381 (493)
Q Consensus 342 ~l~~---~~~~~~~~lVf~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~l~ 381 (493)
.+.. .....+++||||+|++.|+.++..|.+. ...+..+|
T Consensus 306 ~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HH 385 (1724)
T 4f92_B 306 IVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHH 385 (1724)
T ss_dssp HHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEEC
T ss_pred HHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEc
Confidence 1111 2223678999999999999998887531 23488999
Q ss_pred CCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCCCCEEEE----ccCCCCCCCCCCCCcccccccccccccCCC--c
Q 011104 382 GATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN----YDPPVKHGKHLEPDCEVYLHRIGRAGRFGR--K 455 (493)
Q Consensus 382 ~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~v~~Vi~----~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~--~ 455 (493)
|+|++.+|..+.+.|++|.++|||||+++++|||+|.+++||. |++.... ..+.++.+|.||+|||||.|. .
T Consensus 386 agL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~--~~~ls~~~~~Qm~GRAGR~g~d~~ 463 (1724)
T 4f92_B 386 AGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR--WTELGALDILQMLGRAGRPQYDTK 463 (1724)
T ss_dssp SSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTE--EEECCHHHHHHHHTTBSCTTTCSC
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCC--cccCCHHHHHHhhhhccCCCCCCc
Confidence 9999999999999999999999999999999999999999986 5443211 112578999999999999864 6
Q ss_pred ceEEEEeeCCccHHHHHHHH
Q 011104 456 GVVFNLLMDGDDMIIMEKIE 475 (493)
Q Consensus 456 g~~i~l~~~~~~~~~~~~i~ 475 (493)
|.++.+....+...|...+.
T Consensus 464 G~~ii~~~~~~~~~~~~ll~ 483 (1724)
T 4f92_B 464 GEGILITSHGELQYYLSLLN 483 (1724)
T ss_dssp EEEEEEEESTTCCHHHHHTT
T ss_pred cEEEEEecchhHHHHHHHHc
Confidence 99998888776555554443
No 44
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.7e-40 Score=337.50 Aligned_cols=314 Identities=17% Similarity=0.123 Sum_probs=227.9
Q ss_pred CCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCc
Q 011104 121 FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGI 200 (493)
Q Consensus 121 ~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~ 200 (493)
...|+++|..+++.++.+ ++++++++||+|||++|+.++...+.. ...++|||+|+++|+.|+++.+.+++...+.
T Consensus 111 ~~~l~~~Q~~ai~~~~~~--~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~ 186 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVN--RRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFSHA 186 (510)
T ss_dssp EECCCHHHHHHHHHHHHH--SEEEEECCSTTTHHHHHHHHHHHHHHH--CSSEEEEEESSHHHHHHHHHHHHHTTSSCGG
T ss_pred CCCCCHHHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHHHHHhC--CCCeEEEEECcHHHHHHHHHHHHHhhcCCcc
Confidence 347999999999999998 899999999999999999998876642 2348999999999999999999998665555
Q ss_pred eeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhcccCCHHHHHHHHHHhhhcC
Q 011104 201 TSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS 280 (493)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~ 280 (493)
.+..+.++...... ....++|+|+||+.|.. .....+.++++||+||+|++.. ..+..+++.+.
T Consensus 187 ~v~~~~~~~~~~~~-----~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~-----~~~~~il~~~~--- 250 (510)
T 2oca_A 187 MIKKIGGGASKDDK-----YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG-----KSISSIISGLN--- 250 (510)
T ss_dssp GEEECGGGCCTTGG-----GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH-----HHHHHHGGGCT---
T ss_pred ceEEEecCCccccc-----cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc-----ccHHHHHHhcc---
Confidence 66666665443322 23468999999997653 2334578899999999999765 23444544443
Q ss_pred CCeeEEEEeeecChhHHHHHH-HHhccCceeeeccc------cccccCceEEEEeCCCh--------------------H
Q 011104 281 GHCQVLLFSATFNETVKNFVT-RIVKDYNQLFVKKE------ELSLESVKQYKVYCPDE--------------------L 333 (493)
Q Consensus 281 ~~~q~v~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--------------------~ 333 (493)
...++++||||++........ ..+..+........ ......+.......+.. .
T Consensus 251 ~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (510)
T 2oca_A 251 NCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLS 330 (510)
T ss_dssp TCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCH
T ss_pred cCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccH
Confidence 367999999999765422211 11122222211111 01111111222222111 1
Q ss_pred HHHHHHHHHHHHhcccC-CcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEe-Cccc
Q 011104 334 AKVMVIRDRIFELGEKM-GQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIST-DVLA 411 (493)
Q Consensus 334 ~~~~~l~~~l~~~~~~~-~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T-~~~~ 411 (493)
.+...+.+.+......+ .++|||++ .+++..+++.|...+..+..+||+|++.+|..+++.|++|+..||||| ++++
T Consensus 331 ~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~ 409 (510)
T 2oca_A 331 KRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS 409 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh
Confidence 12223344444433333 45566666 899999999999998899999999999999999999999999999999 9999
Q ss_pred cCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEee
Q 011104 412 RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLM 463 (493)
Q Consensus 412 ~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~ 463 (493)
+|+|+|++++||++++| .+...|.||+||+||.|..|.++.++.
T Consensus 410 ~GiDip~v~~vi~~~~~--------~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 410 TGISVKNLHHVVLAHGV--------KSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HSCCCCSEEEEEESSCC--------CSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cccccccCcEEEEeCCC--------CCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999 778899999999999998775555554
No 45
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=8.3e-42 Score=351.04 Aligned_cols=316 Identities=20% Similarity=0.221 Sum_probs=214.3
Q ss_pred HHHhhCCCC-----CCchHHH-----hhhhhhc------CCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEE
Q 011104 114 GLYVEMKFQ-----KPSKIQA-----ISLPMIL------TPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (493)
Q Consensus 114 ~l~~~~g~~-----~~~~~Q~-----~~i~~il------~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil 177 (493)
++.. +||. .|+++|+ ++||.++ .| +|++++|+||||||++|++|++..+.. .+.++||+
T Consensus 202 ~l~~-~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g--~dvlv~apTGSGKTl~~ll~il~~l~~--~~~~~lil 276 (673)
T 2wv9_A 202 GLYG-NGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKR--QLTVLDLHPGAGKTRRILPQIIKDAIQ--KRLRTAVL 276 (673)
T ss_dssp EEEE-EEEECSSSCEEEEEECC-------CCCCCGGGGSTT--CEEEECCCTTTTTTTTHHHHHHHHHHH--TTCCEEEE
T ss_pred Eeee-ccccccCCCccCceeeccccccchHHHhhHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEE
Confidence 4443 6777 8999999 9999998 77 999999999999999999999987643 45789999
Q ss_pred cCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecch
Q 011104 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (493)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah 257 (493)
+||++||.|+++.+..+. +. ..... .......+.-+-+.+.+.+.+.+... ..+.++++|||||||
T Consensus 277 aPTr~La~Q~~~~l~~~~----i~--~~~~~-------l~~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH 342 (673)
T 2wv9_A 277 APTRVVAAEMAEALRGLP----VR--YLTPA-------VQREHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAH 342 (673)
T ss_dssp ESSHHHHHHHHHHTTTSC----CE--ECCC----------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTT
T ss_pred ccHHHHHHHHHHHHhcCC----ee--eeccc-------ccccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCc
Confidence 999999999998877542 11 11100 00011112234555666665555543 468899999999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeCCChHHHHH
Q 011104 258 HMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVM 337 (493)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (493)
++.. .+...+..+...+. ....|+++||||++..+..+... ... +......++... ..
T Consensus 343 ~~~~--~~~~~~~~l~~~~~--~~~~~vl~~SAT~~~~i~~~~~~---~~~-------------i~~v~~~~~~~~--~~ 400 (673)
T 2wv9_A 343 FTDP--ASIAARGYIATRVE--AGEAAAIFMTATPPGTSDPFPDT---NSP-------------VHDVSSEIPDRA--WS 400 (673)
T ss_dssp CCCH--HHHHHHHHHHHHHH--TTSCEEEEECSSCTTCCCSSCCC---SSC-------------EEEEECCCCSSC--CS
T ss_pred ccCc--cHHHHHHHHHHhcc--ccCCcEEEEcCCCChhhhhhccc---CCc-------------eEEEeeecCHHH--HH
Confidence 9821 12222222222222 13689999999998664321110 000 111110111110 00
Q ss_pred HHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCC
Q 011104 338 VIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQ 417 (493)
Q Consensus 338 ~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~ 417 (493)
.+...+. ...+++||||+++++++.++..|+..++.+..+||. +|..+++.|++|+.+|||||+++++|||+|
T Consensus 401 ~~l~~l~---~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip 473 (673)
T 2wv9_A 401 SGFEWIT---DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG 473 (673)
T ss_dssp SCCHHHH---SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC
T ss_pred HHHHHHH---hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC
Confidence 0111122 247899999999999999999999999999999994 789999999999999999999999999999
Q ss_pred CCCEEEEccCCCCCC------------CCCCCCcccccccccccccC-CCcceEEEEee--CCccHHHHHHHHHHh
Q 011104 418 QVNLIVNYDPPVKHG------------KHLEPDCEVYLHRIGRAGRF-GRKGVVFNLLM--DGDDMIIMEKIERYF 478 (493)
Q Consensus 418 ~v~~Vi~~~~p~~~~------------~~~~~s~~~y~qr~GR~~R~-g~~g~~i~l~~--~~~~~~~~~~i~~~~ 478 (493)
+++||+++.+..+. ...+.+.++|+||+||+||. |+.|.|++|+. ..++..++..++..+
T Consensus 474 -v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 474 -ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp -CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred -CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 99999844211100 01127889999999999998 78999999973 344555556666554
No 46
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=4.3e-41 Score=340.07 Aligned_cols=276 Identities=18% Similarity=0.200 Sum_probs=201.3
Q ss_pred hHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEe
Q 011104 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECA 205 (493)
Q Consensus 126 ~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~ 205 (493)
+.|...++.+..+ ++++++|+||||||++|.+|+++ .+.++||++|||+||.|+++.+.+... ..+...
T Consensus 220 ~~q~~i~~~L~~~--~~vlv~ApTGSGKT~a~~l~ll~------~g~~vLVl~PTReLA~Qia~~l~~~~g---~~vg~~ 288 (666)
T 3o8b_A 220 TDNSSPPAVPQSF--QVAHLHAPTGSGKSTKVPAAYAA------QGYKVLVLNPSVAATLGFGAYMSKAHG---IDPNIR 288 (666)
T ss_dssp CCCCSCCCCCSSC--EEEEEECCTTSCTTTHHHHHHHH------TTCCEEEEESCHHHHHHHHHHHHHHHS---CCCEEE
T ss_pred HHHHHHHHHHHcC--CeEEEEeCCchhHHHHHHHHHHH------CCCeEEEEcchHHHHHHHHHHHHHHhC---CCeeEE
Confidence 4444444444455 89999999999999999999986 355899999999999999987765542 333334
Q ss_pred ecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhcccCCHHHHHHHHHHhhhcCCCeeE
Q 011104 206 VPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQV 285 (493)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~~q~ 285 (493)
+++.. ...+++|+|+||++| +....+.+.++++|||||||.+. .+|...+..+++.++..+ ...+
T Consensus 289 vG~~~---------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l~--~~~~~~l~~Il~~l~~~~-~~ll 353 (666)
T 3o8b_A 289 TGVRT---------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHSTD--STTILGIGTVLDQAETAG-ARLV 353 (666)
T ss_dssp CSSCE---------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCCS--HHHHHHHHHHHHHTTTTT-CSEE
T ss_pred ECcEe---------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhcC--ccHHHHHHHHHHhhhhcC-CceE
Confidence 44321 234579999999998 45667778899999999998664 367777777877776532 2347
Q ss_pred EEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHH
Q 011104 286 LLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASA 365 (493)
Q Consensus 286 v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~ 365 (493)
++||||++..+. ...+....+... ......+ .... .. ......+++||||++++.++.
T Consensus 354 il~SAT~~~~i~------~~~p~i~~v~~~---~~~~i~~---~~~~-~~---------l~~~~~~~vLVFv~Tr~~ae~ 411 (666)
T 3o8b_A 354 VLATATPPGSVT------VPHPNIEEVALS---NTGEIPF---YGKA-IP---------IEAIRGGRHLIFCHSKKKCDE 411 (666)
T ss_dssp EEEESSCTTCCC------CCCTTEEEEECB---SCSSEEE---TTEE-EC---------GGGSSSSEEEEECSCHHHHHH
T ss_pred EEECCCCCcccc------cCCcceEEEeec---ccchhHH---HHhh-hh---------hhhccCCcEEEEeCCHHHHHH
Confidence 788999987421 111111111000 0000010 0000 00 011246899999999999999
Q ss_pred HHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCCCCEEE----------Ecc---------
Q 011104 366 LHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIV----------NYD--------- 426 (493)
Q Consensus 366 l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~v~~Vi----------~~~--------- 426 (493)
+++.|++.++.+..+||+|++.+ |.++..+|||||+++++|||+| +++|| |||
T Consensus 412 la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~ 483 (666)
T 3o8b_A 412 LAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIET 483 (666)
T ss_dssp HHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEE
T ss_pred HHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccccc
Confidence 99999999999999999999875 4566679999999999999997 99999 566
Q ss_pred --CCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCcc
Q 011104 427 --PPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 467 (493)
Q Consensus 427 --~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~ 467 (493)
.| .+.++|+||+||+|| |+.|. ++|+++.+.
T Consensus 484 ~~~P--------~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 484 TTVP--------QDAVSRSQRRGRTGR-GRRGI-YRFVTPGER 516 (666)
T ss_dssp EEEE--------CBHHHHHHHHTTBCS-SSCEE-EEESCCCCB
T ss_pred ccCc--------CCHHHHHHHhccCCC-CCCCE-EEEEecchh
Confidence 67 789999999999999 89999 999987764
No 47
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=3.4e-42 Score=340.58 Aligned_cols=287 Identities=16% Similarity=0.197 Sum_probs=193.1
Q ss_pred hhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCc
Q 011104 134 MILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY 213 (493)
Q Consensus 134 ~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (493)
.++.| ++++++||||||||++|++|+++.+.. .+++++|++||++||.|+++.+..+. + .+..+. .
T Consensus 4 ~l~~g--~~vlv~a~TGSGKT~~~l~~~l~~~~~--~~~~~lil~Ptr~La~Q~~~~l~~~~----v--~~~~~~--~-- 69 (440)
T 1yks_A 4 MLKKG--MTTVLDFHPGAGKTRRFLPQILAECAR--RRLRTLVLAPTRVVLSEMKEAFHGLD----V--KFHTQA--F-- 69 (440)
T ss_dssp TTSTT--CEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTTSC----E--EEESSC--C--
T ss_pred HhhCC--CCEEEEcCCCCCHHHHHHHHHHHHHHh--cCCeEEEEcchHHHHHHHHHHHhcCC----e--EEeccc--c--
Confidence 35667 999999999999999999999986643 35689999999999999999877442 1 111100 0
Q ss_pred ccccCCCCCCCcEEEeCchHH---------HHHHHcCccCCCCeeEEEEecchhhhcccCCHHHHHHHHHHhhhcCCCee
Q 011104 214 VPISKRPPVTAQVVIGTPGTI---------KKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQ 284 (493)
Q Consensus 214 ~~~~~~~~~~~~Ilv~Tp~~l---------~~~l~~~~~~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~~q 284 (493)
-.++||+++ ...+.. ...+.++++||+||+|++. .++...+..+...+. ..+.|
T Consensus 70 ------------~~v~Tp~~l~~~l~~~~l~~~~~~-~~~~~~l~~vViDEah~~~--~~~~~~~~~~~~~~~--~~~~~ 132 (440)
T 1yks_A 70 ------------SAHGSGREVIDAMCHATLTYRMLE-PTRVVNWEVIIMDEAHFLD--PASIAARGWAAHRAR--ANESA 132 (440)
T ss_dssp ------------CCCCCSSCCEEEEEHHHHHHHHTS-SSCCCCCSEEEETTTTCCS--HHHHHHHHHHHHHHH--TTSCE
T ss_pred ------------eeccCCccceeeecccchhHhhhC-cccccCccEEEEECccccC--cchHHHHHHHHHHhc--cCCce
Confidence 024555444 332222 2347899999999999982 233222222222222 23689
Q ss_pred EEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHH
Q 011104 285 VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSAS 364 (493)
Q Consensus 285 ~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~ 364 (493)
+++||||+++.+..+.. .... +......++.... ..+...+.. ..+++||||++++.++
T Consensus 133 ~l~~SAT~~~~~~~~~~----~~~~------------~~~~~~~~~~~~~--~~~~~~l~~---~~~~~lVF~~s~~~a~ 191 (440)
T 1yks_A 133 TILMTATPPGTSDEFPH----SNGE------------IEDVQTDIPSEPW--NTGHDWILA---DKRPTAWFLPSIRAAN 191 (440)
T ss_dssp EEEECSSCTTCCCSSCC----CSSC------------EEEEECCCCSSCC--SSSCHHHHH---CCSCEEEECSCHHHHH
T ss_pred EEEEeCCCCchhhhhhh----cCCC------------eeEeeeccChHHH--HHHHHHHHh---cCCCEEEEeCCHHHHH
Confidence 99999999876432211 1111 1111111111100 001111222 3679999999999999
Q ss_pred HHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCCCCEEEE-------------------c
Q 011104 365 ALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN-------------------Y 425 (493)
Q Consensus 365 ~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~v~~Vi~-------------------~ 425 (493)
.+++.|+..++.+..+|| .+|..+++.|++|+.+|||||+++++|+|+| +++||+ |
T Consensus 192 ~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~ 266 (440)
T 1yks_A 192 VMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKG 266 (440)
T ss_dssp HHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecc
Confidence 999999999999999999 3588999999999999999999999999999 999997 7
Q ss_pred cCCCCCCCCCCCCcccccccccccccC-CCcceEEEEee--CCccHHHHHHHHHHhCCCceee
Q 011104 426 DPPVKHGKHLEPDCEVYLHRIGRAGRF-GRKGVVFNLLM--DGDDMIIMEKIERYFDIKVTEV 485 (493)
Q Consensus 426 ~~p~~~~~~~~~s~~~y~qr~GR~~R~-g~~g~~i~l~~--~~~~~~~~~~i~~~~~~~~~~~ 485 (493)
+.| .+..+|+||+||+||. |+.|.|++|+. ..++..++..++..+.....++
T Consensus 267 ~~p--------~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l 321 (440)
T 1yks_A 267 PLR--------ISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEV 321 (440)
T ss_dssp EEE--------CCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCC
T ss_pred ccc--------cCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhccccccc
Confidence 778 7899999999999997 78999999972 4455666777777664433333
No 48
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=7.9e-39 Score=300.37 Aligned_cols=212 Identities=45% Similarity=0.765 Sum_probs=182.9
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCC
Q 011104 93 DTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAP 172 (493)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~ 172 (493)
..+..+..+|+++++++.++++|.. +||..|+++|.++||.++.|.++|++++||||||||++|++|+++++.....++
T Consensus 85 ~~p~~~~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~ 163 (300)
T 3fmo_B 85 NSPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP 163 (300)
T ss_dssp TCCCCCCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSC
T ss_pred CCCcCCcCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCc
Confidence 3455567899999999999999997 999999999999999999875589999999999999999999999998877788
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhccc-CceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHc-CccCCCCeeE
Q 011104 173 QALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA-KKLGFSRLKI 250 (493)
Q Consensus 173 ~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~ 250 (493)
++||++||++||.|+++.++.++... ++.+.+.+++..... .....++|+|+||++|++++.+ ..+.+.++++
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~ 238 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-----GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 238 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCT-----TCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhh-----hhcCCCCEEEECHHHHHHHHHhcCCCChhhceE
Confidence 99999999999999999999998764 466666666554322 1234679999999999999976 5667899999
Q ss_pred EEEecchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeec
Q 011104 251 LVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVK 313 (493)
Q Consensus 251 iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 313 (493)
|||||||++++..+|...+..++..++. .+|+++||||++..+..++..++.+|..+.+.
T Consensus 239 lVlDEad~l~~~~~~~~~~~~i~~~~~~---~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 239 FVLDEADVMIATQGHQDQSIRIQRMLPR---NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp EEETTHHHHHHSTTHHHHHHHHHTTSCT---TCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred EEEeCHHHHhhccCcHHHHHHHHHhCCC---CCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 9999999999755888888888776654 78999999999999999999999999887654
No 49
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=7.7e-39 Score=322.13 Aligned_cols=294 Identities=22% Similarity=0.269 Sum_probs=212.0
Q ss_pred CCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCce-
Q 011104 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT- 201 (493)
Q Consensus 123 ~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~- 201 (493)
.|+|+|.++++.++.+ ++++++++||+|||++|+.++... +.++|||||+++|+.||.+.+.++ ++.
T Consensus 93 ~l~~~Q~~ai~~i~~~--~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~ 160 (472)
T 2fwr_A 93 SLRDYQEKALERWLVD--KRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEY 160 (472)
T ss_dssp CBCHHHHHHHHHHTTT--TEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG----CGGG
T ss_pred CcCHHHHHHHHHHHhc--CCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC----CCcc
Confidence 5999999999999998 789999999999999999988764 568999999999999999998884 444
Q ss_pred eeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhcccCCHHHHHHHHHHhhhcCC
Q 011104 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSG 281 (493)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~ 281 (493)
+..+.++.. ..++|+|+||+.+...+.. + ..++++||+||||++... +|.. ++..+ +
T Consensus 161 v~~~~g~~~-----------~~~~Ivv~T~~~l~~~~~~--~-~~~~~liIvDEaH~~~~~-~~~~----~~~~~----~ 217 (472)
T 2fwr_A 161 VGEFSGRIK-----------ELKPLTVSTYDSAYVNAEK--L-GNRFMLLIFDEVHHLPAE-SYVQ----IAQMS----I 217 (472)
T ss_dssp EEEBSSSCB-----------CCCSEEEEEHHHHHHTHHH--H-TTTCSEEEEETGGGTTST-TTHH----HHHTC----C
T ss_pred eEEECCCcC-----------CcCCEEEEEcHHHHHHHHH--h-cCCCCEEEEECCcCCCCh-HHHH----HHHhc----C
Confidence 444444332 1368999999999776542 1 245899999999999873 5543 33333 2
Q ss_pred CeeEEEEeeecChh-------------------HHHHHHHHhccCce--eeeccccc-----------------------
Q 011104 282 HCQVLLFSATFNET-------------------VKNFVTRIVKDYNQ--LFVKKEEL----------------------- 317 (493)
Q Consensus 282 ~~q~v~~SAT~~~~-------------------~~~~~~~~~~~~~~--~~~~~~~~----------------------- 317 (493)
..+++++|||+... ...+...++..+.. +.+.....
T Consensus 218 ~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 297 (472)
T 2fwr_A 218 APFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITL 297 (472)
T ss_dssp CSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTT
T ss_pred CCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 56899999998621 22211111111111 00000000
Q ss_pred -cccCceEEEEe---C-----------------CChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCc
Q 011104 318 -SLESVKQYKVY---C-----------------PDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYE 376 (493)
Q Consensus 318 -~~~~~~~~~~~---~-----------------~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~ 376 (493)
....+.+++.. . .....+...+.+.+.. ..++++||||++...++.+++.|.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~----- 370 (472)
T 2fwr_A 298 RRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL----- 370 (472)
T ss_dssp TCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----
T ss_pred cchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----
Confidence 00000000000 0 0112344455554444 347899999999999999999883
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCc-
Q 011104 377 VTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRK- 455 (493)
Q Consensus 377 ~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~- 455 (493)
+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++| .++..|.||+||+||.|+.
T Consensus 371 ~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~--------~s~~~~~Q~~GR~~R~g~~k 442 (472)
T 2fwr_A 371 IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGS--------GSAREYIQRLGRILRPSKGK 442 (472)
T ss_dssp CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCS--------SCCHHHHHHHHHSBCCCTTT
T ss_pred cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCC--------CCHHHHHHHHhhccCCCCCC
Confidence 6689999999999999999999999999999999999999999999999999 7889999999999999843
Q ss_pred --ceEEEEeeCCc
Q 011104 456 --GVVFNLLMDGD 466 (493)
Q Consensus 456 --g~~i~l~~~~~ 466 (493)
..++.|+..+.
T Consensus 443 ~~~~i~~lv~~~t 455 (472)
T 2fwr_A 443 KEAVLYELISRGT 455 (472)
T ss_dssp CCEEEEEEEECSC
T ss_pred ceEEEEEEEeCCC
Confidence 34556776554
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2e-39 Score=322.77 Aligned_cols=276 Identities=18% Similarity=0.188 Sum_probs=192.8
Q ss_pred hhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCC
Q 011104 132 LPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDST 211 (493)
Q Consensus 132 i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (493)
...+..| ++++++||||||||++|++|++..+.. .++++||++||++||.|+++.+..+ .+........
T Consensus 15 ~~~l~~~--~~vlv~a~TGsGKT~~~~l~il~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~g~------~v~~~~~~~~- 83 (459)
T 2z83_A 15 PNMLRKR--QMTVLDLHPGSGKTRKILPQIIKDAIQ--QRLRTAVLAPTRVVAAEMAEALRGL------PVRYQTSAVQ- 83 (459)
T ss_dssp CGGGSTT--CEEEECCCTTSCTTTTHHHHHHHHHHH--TTCCEEEEECSHHHHHHHHHHTTTS------CEEECC-----
T ss_pred HHHHhcC--CcEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEECchHHHHHHHHHHhcCc------eEeEEecccc-
Confidence 3444555 899999999999999999999987643 4578999999999999999987622 2211111110
Q ss_pred CcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeee
Q 011104 212 NYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSAT 291 (493)
Q Consensus 212 ~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT 291 (493)
.....+.-+.++|.+.+...+... ..+.++++|||||||++... ......++..+.. .+..|+++||||
T Consensus 84 ------~~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~---~~~~~~~~~~~~~-~~~~~~il~SAT 152 (459)
T 2z83_A 84 ------REHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPA---SIAARGYIATKVE-LGEAAAIFMTAT 152 (459)
T ss_dssp ----------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHH---HHHHHHHHHHHHH-TTSCEEEEECSS
T ss_pred ------cCCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCch---hhHHHHHHHHHhc-cCCccEEEEEcC
Confidence 001223458888999888777654 45889999999999984210 0111111222211 237899999999
Q ss_pred cChhHHHHHHHHhccCceeeeccccccccCceEEEEeCCCh--HHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHH
Q 011104 292 FNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDE--LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKA 369 (493)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~ 369 (493)
++..+..+... ..|... +. . ..+.. ...... +.. ..+++||||+++..++.++..
T Consensus 153 ~~~~~~~~~~~--~~pi~~-~~-~------------~~~~~~~~~~~~~----l~~---~~~~~LVF~~s~~~~~~l~~~ 209 (459)
T 2z83_A 153 PPGTTDPFPDS--NAPIHD-LQ-D------------EIPDRAWSSGYEW----ITE---YAGKTVWFVASVKMGNEIAMC 209 (459)
T ss_dssp CTTCCCSSCCC--SSCEEE-EE-C------------CCCSSCCSSCCHH----HHH---CCSCEEEECSCHHHHHHHHHH
T ss_pred CCcchhhhccC--CCCeEE-ec-c------------cCCcchhHHHHHH----HHh---cCCCEEEEeCChHHHHHHHHH
Confidence 98654322110 111111 00 0 01100 011111 222 267999999999999999999
Q ss_pred HHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCCCCEEEE--------------------ccCCC
Q 011104 370 LKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVN--------------------YDPPV 429 (493)
Q Consensus 370 L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~v~~Vi~--------------------~~~p~ 429 (493)
|+..++.+..+||. +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ |+.|
T Consensus 210 L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p- 283 (459)
T 2z83_A 210 LQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSP- 283 (459)
T ss_dssp HHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEE-
T ss_pred HHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCC-
Confidence 99999999999995 6788999999999999999999999999999 99999 5577
Q ss_pred CCCCCCCCCcccccccccccccCCC-cceEEEEeeCC
Q 011104 430 KHGKHLEPDCEVYLHRIGRAGRFGR-KGVVFNLLMDG 465 (493)
Q Consensus 430 ~~~~~~~~s~~~y~qr~GR~~R~g~-~g~~i~l~~~~ 465 (493)
.|..+|+||+||+||.|. .|.|++|+++.
T Consensus 284 -------~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 284 -------ITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp -------CCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred -------CCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 889999999999999997 99999999875
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1e-37 Score=308.00 Aligned_cols=268 Identities=18% Similarity=0.179 Sum_probs=186.2
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (493)
++++++||||||||++|++|++..+.. .+.+++|++||++||.|+++.+. +..+.+..+... ...
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~--~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~-------~~~ 67 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVK--KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQ-------SER 67 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC---------------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCcc-------ccC
Confidence 899999999999999999999855432 45689999999999999988765 233333222211 111
Q ss_pred CCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHH
Q 011104 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFV 300 (493)
Q Consensus 221 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~ 300 (493)
..+.-+.+.|.+.+.+.+.. ...+.++++||+||+|++.. ++.... ..+..+. ..+.+|+++||||+++.+..+.
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~~~--~~~~~~-~~l~~~~-~~~~~~~l~~SAT~~~~~~~~~ 142 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFLDP--ASVAAR-GYIETRV-SMGDAGAIFMTATPPGTTEAFP 142 (431)
T ss_dssp -CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCCSH--HHHHHH-HHHHHHH-HTTSCEEEEEESSCTTCCCSSC
T ss_pred CCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccCCc--cHHHHH-HHHHHHh-hCCCCcEEEEeCCCCcchhhhc
Confidence 12345778899988777766 45588999999999999732 232322 3333332 1236899999999986432111
Q ss_pred HHHhccCceeeeccccccccCceEEEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEe
Q 011104 301 TRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTI 380 (493)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l 380 (493)
. ..+. +.......+.. ....+...+.. ..+++||||+++++++.+++.|+..++.+..+
T Consensus 143 ~---~~~~-------------i~~~~~~~~~~--~~~~~~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~l 201 (431)
T 2v6i_A 143 P---SNSP-------------IIDEETRIPDK--AWNSGYEWITE---FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYL 201 (431)
T ss_dssp C---CSSC-------------CEEEECCCCSS--CCSSCCHHHHS---CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred C---CCCc-------------eeeccccCCHH--HHHHHHHHHHc---CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEe
Confidence 0 0000 00000011110 00111121222 35789999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCCCCE-----------------EEEccCCCCCCCCCCCCccccc
Q 011104 381 MGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNL-----------------IVNYDPPVKHGKHLEPDCEVYL 443 (493)
Q Consensus 381 ~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~v~~-----------------Vi~~~~p~~~~~~~~~s~~~y~ 443 (493)
||+ +|..+++.|++|+.+|||||+++++|+|+| +.+ ||+++.| .+..+|+
T Consensus 202 hg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p--------~~~~~~~ 268 (431)
T 2v6i_A 202 NRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIA--------ITPASAA 268 (431)
T ss_dssp STT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEE--------CCHHHHH
T ss_pred CCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeeccccc--------CCHHHHH
Confidence 997 478899999999999999999999999999 666 4667777 7899999
Q ss_pred ccccccccCCCc-ceEEEEe
Q 011104 444 HRIGRAGRFGRK-GVVFNLL 462 (493)
Q Consensus 444 qr~GR~~R~g~~-g~~i~l~ 462 (493)
||+||+||.|.. |.++++.
T Consensus 269 Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 269 QRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HHHTTSSCCTTCCCCEEEEC
T ss_pred HhhhccCCCCCCCCeEEEEc
Confidence 999999999854 4555444
No 52
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.1e-37 Score=321.74 Aligned_cols=302 Identities=13% Similarity=0.155 Sum_probs=186.0
Q ss_pred CCchHHHhhhhhhcC----CCCccEEEeccCCCchhHHhHHHHHhccCCC------CCCCeEEEEcCCHHHHHHHH-HHH
Q 011104 123 KPSKIQAISLPMILT----PPYRNLIAQARNGSGKTTCFVLGMLSRVDPN------LKAPQALCICPTRELAIQNL-EVL 191 (493)
Q Consensus 123 ~~~~~Q~~~i~~il~----~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~------~~~~~~lil~Pt~~La~q~~-~~~ 191 (493)
.|+++|..+++.++. |. ++++++++||||||++++..+...+... ..+.++|||+||++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999999876 42 6799999999999999655444333221 15679999999999999999 777
Q ss_pred HHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHc----CccCCCCeeEEEEecchhhhcccCCHH
Q 011104 192 RKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA----KKLGFSRLKILVYDEADHMLDEAGFRD 267 (493)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~----~~~~~~~~~~iVlDEah~l~~~~~~~~ 267 (493)
+.++.. ...+.+ .......+|+|+||++|...+.. ..+....+++||+||||++... ...
T Consensus 257 ~~~~~~----~~~~~~----------~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~--~~~ 320 (590)
T 3h1t_A 257 TPFGDA----RHKIEG----------GKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSAR--DNS 320 (590)
T ss_dssp TTTCSS----EEECCC------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------
T ss_pred Hhcchh----hhhhhc----------cCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcccccc--chH
Confidence 665432 111111 11223578999999999887642 2344667899999999998752 123
Q ss_pred HHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeecccc---ccccCceEEEEeC---------------
Q 011104 268 DSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEE---LSLESVKQYKVYC--------------- 329 (493)
Q Consensus 268 ~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--------------- 329 (493)
.+..++..+. ..++++||||+..........++..+......... ..........+..
T Consensus 321 ~~~~il~~~~----~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (590)
T 3h1t_A 321 NWREILEYFE----PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVD 396 (590)
T ss_dssp -CHHHHHHST----TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------
T ss_pred HHHHHHHhCC----cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccc
Confidence 4455666554 35799999998744333233333332221110000 0000000000000
Q ss_pred ------------CChH-------HHHHHHHHHH---HHhcccCCcEEEEcCChhhHHHHHHHHHhCCC--------cEEE
Q 011104 330 ------------PDEL-------AKVMVIRDRI---FELGEKMGQTIIFVRTKNSASALHKALKDFGY--------EVTT 379 (493)
Q Consensus 330 ------------~~~~-------~~~~~l~~~l---~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~--------~~~~ 379 (493)
.... .....+.+.+ .......+++||||+++.+|+.++..|...+. .+..
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 476 (590)
T 3h1t_A 397 RFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVAR 476 (590)
T ss_dssp ------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEE
T ss_pred ccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEE
Confidence 0000 0111222222 22223458999999999999999999987543 3788
Q ss_pred ecCCCCHHHHHHHHHHHHcCCCc---EEEEeCccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCC
Q 011104 380 IMGATIQEERDKIVKEFKDGLTQ---VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 454 (493)
Q Consensus 380 l~~~~~~~~r~~~~~~f~~g~~~---vLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~ 454 (493)
+||.+++ +|..+++.|++|+.. |||||+++++|+|+|++++||++++| .|...|+||+||+||.+.
T Consensus 477 i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~--------~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 477 VTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVV--------NSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp CSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCC--------CCHHHHHHHHTTSCCCBG
T ss_pred EeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecC--------CChHHHHHHHhhhcccCc
Confidence 9999864 799999999998765 88999999999999999999999999 789999999999999875
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=6.5e-36 Score=306.25 Aligned_cols=308 Identities=17% Similarity=0.154 Sum_probs=210.5
Q ss_pred HHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEee
Q 011104 127 IQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAV 206 (493)
Q Consensus 127 ~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~ 206 (493)
.|.......+.| ++++++||||||||+.++..++.. ...+|++|||+||.|+++.+... ++.+....
T Consensus 144 ~~~~p~ar~l~r--k~vlv~apTGSGKT~~al~~l~~~-------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~llt 210 (677)
T 3rc3_A 144 PNWYPDARAMQR--KIIFHSGPTNSGKTYHAIQKYFSA-------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVT 210 (677)
T ss_dssp GGGCHHHHTSCC--EEEEEECCTTSSHHHHHHHHHHHS-------SSEEEEESSHHHHHHHHHHHHHT----TCCEEEEC
T ss_pred hhhCHHHHhcCC--CEEEEEcCCCCCHHHHHHHHHHhc-------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEE
Confidence 333344455777 999999999999999544433322 24599999999999999998886 34555555
Q ss_pred cCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhcccCCHHHHHHHHHHhhhcCCCeeEE
Q 011104 207 PTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVL 286 (493)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~~q~v 286 (493)
|+..... .......+++++|++.+. ....+++|||||||++.+ .+|...+..++..+.. ...+++
T Consensus 211 G~~~~iv----~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d-~~~g~~~~~~l~~l~~--~~i~il 275 (677)
T 3rc3_A 211 GEERVTV----QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRD-PARGWAWTRALLGLCA--EEVHLC 275 (677)
T ss_dssp SSCEECC----STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGC-TTTHHHHHHHHHHCCE--EEEEEE
T ss_pred CCeeEEe----cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCC-ccchHHHHHHHHccCc--cceEEE
Confidence 5442211 111123578888875432 246789999999999987 5888888888877762 368999
Q ss_pred EEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHH
Q 011104 287 LFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASAL 366 (493)
Q Consensus 287 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l 366 (493)
++|||. +.+..+.... .....+.... ...... . ...... . +. ......+|||+++++++.+
T Consensus 276 ~~SAT~-~~i~~l~~~~-~~~~~v~~~~---r~~~l~---~-~~~~l~---~----l~---~~~~g~iIf~~s~~~ie~l 336 (677)
T 3rc3_A 276 GEPAAI-DLVMELMYTT-GEEVEVRDYK---RLTPIS---V-LDHALE---S----LD---NLRPGDCIVCFSKNDIYSV 336 (677)
T ss_dssp ECGGGH-HHHHHHHHHH-TCCEEEEECC---CSSCEE---E-CSSCCC---S----GG---GCCTTEEEECSSHHHHHHH
T ss_pred eccchH-HHHHHHHHhc-CCceEEEEee---ecchHH---H-HHHHHH---H----HH---hcCCCCEEEEcCHHHHHHH
Confidence 999994 2333333322 2222221110 000000 0 000000 0 11 1134568999999999999
Q ss_pred HHHHHhCCCcEEEecCCCCHHHHHHHHHHHHc--CCCcEEEEeCccccCCCCCCCCEEEEccCCCC------CCCCCCCC
Q 011104 367 HKALKDFGYEVTTIMGATIQEERDKIVKEFKD--GLTQVLISTDVLARGFDQQQVNLIVNYDPPVK------HGKHLEPD 438 (493)
Q Consensus 367 ~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~--g~~~vLv~T~~~~~Gldi~~v~~Vi~~~~p~~------~~~~~~~s 438 (493)
+..|...++.+..+||+|++.+|..+++.|++ |..+|||||+++++|||+ ++++||+++.+.. .....+.+
T Consensus 337 a~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s 415 (677)
T 3rc3_A 337 SRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPIT 415 (677)
T ss_dssp HHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCC
T ss_pred HHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCC
Confidence 99999999999999999999999999999999 889999999999999999 9999999999542 11112378
Q ss_pred cccccccccccccCCCc---ceEEEEeeCCccHHHHHHHHHHhCCCcee
Q 011104 439 CEVYLHRIGRAGRFGRK---GVVFNLLMDGDDMIIMEKIERYFDIKVTE 484 (493)
Q Consensus 439 ~~~y~qr~GR~~R~g~~---g~~i~l~~~~~~~~~~~~i~~~~~~~~~~ 484 (493)
..+|+||+|||||.|.. |.|+.++. ++...++.+......+++.
T Consensus 416 ~~~~~QR~GRAGR~g~~g~~G~v~~l~~--~d~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 416 TSQALQIAGRAGRFSSRFKEGEVTTMNH--EDLSLLKEILKRPVDPIRA 462 (677)
T ss_dssp HHHHHHHHTTBTCTTSSCSSEEEEESST--THHHHHHHHHHSCCCCCCC
T ss_pred HHHHHHHhcCCCCCCCCCCCEEEEEEec--chHHHHHHHHhcCcchhhh
Confidence 99999999999999865 66665443 3444555555555555554
No 54
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=8.8e-37 Score=278.69 Aligned_cols=216 Identities=26% Similarity=0.428 Sum_probs=186.6
Q ss_pred cCCCCCCCCCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCC---
Q 011104 91 TGDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP--- 167 (493)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~--- 167 (493)
.+...+.+..+|+++++++.+++.+.. +||..|+++|.++|+.++.| +++++++|||||||++|++|++..+..
T Consensus 20 ~~~~~p~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g--~~~l~~apTGsGKT~~~~l~~l~~l~~~~~ 96 (242)
T 3fe2_A 20 RGHNCPKPVLNFYEANFPANVMDVIAR-QNFTEPTAIQAQGWPVALSG--LDMVGVAQTGSGKTLSYLLPAIVHINHQPF 96 (242)
T ss_dssp ESSCCCCCCSSTTTTTCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHHT--CCEEEEECTTSCHHHHHHHHHHHHHHTSCC
T ss_pred eCCCCCCccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCcCHHHHHHHHHHHHHHHhccc
Confidence 455567788999999999999999987 99999999999999999999 999999999999999999999988753
Q ss_pred --CCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCC
Q 011104 168 --NLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGF 245 (493)
Q Consensus 168 --~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~ 245 (493)
...++++||++||++|+.|+++.+++++...++.+.+.+++....... .....+++|+|+||++|.+++......+
T Consensus 97 ~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~I~v~Tp~~l~~~l~~~~~~~ 174 (242)
T 3fe2_A 97 LERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQI--RDLERGVEICIATPGRLIDFLECGKTNL 174 (242)
T ss_dssp CCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHH--HHHHHCCSEEEECHHHHHHHHHHTSCCC
T ss_pred cccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHH--HHhcCCCCEEEECHHHHHHHHHcCCCCc
Confidence 235778999999999999999999999988888888887776433211 1112247999999999999999888889
Q ss_pred CCeeEEEEecchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccc
Q 011104 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKE 315 (493)
Q Consensus 246 ~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 315 (493)
.++++||+||||++.+ .+|...+..++..++. ..|+++||||+++.+..++..++.+|..+.+...
T Consensus 175 ~~~~~lViDEah~l~~-~~~~~~~~~i~~~~~~---~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 175 RRTTYLVLDEADRMLD-MGFEPQIRKIVDQIRP---DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp TTCCEEEETTHHHHHH-TTCHHHHHHHHTTSCS---SCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred ccccEEEEeCHHHHhh-hCcHHHHHHHHHhCCc---cceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9999999999999998 5899999988877755 7899999999999999999999999988876543
No 55
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.9e-35 Score=268.92 Aligned_cols=210 Identities=32% Similarity=0.542 Sum_probs=175.8
Q ss_pred CCCCCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEE
Q 011104 96 YTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQAL 175 (493)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~l 175 (493)
+.+..+|+++++++.+++.+.. +||..|+++|.++++.++.| +++++++|||||||++|++|++..+.....++++|
T Consensus 26 ~~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~--~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~l 102 (237)
T 3bor_A 26 NEIVDNFDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCIKG--YDVIAQAQSGTGKTATFAISILQQLEIEFKETQAL 102 (237)
T ss_dssp -CCCCSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTT--CCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEE
T ss_pred CCccCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEE
Confidence 3456789999999999999987 99999999999999999999 99999999999999999999999987666778999
Q ss_pred EEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEec
Q 011104 176 CICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDE 255 (493)
Q Consensus 176 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDE 255 (493)
|++||++|+.|+++.++.++...+..+....++...... ........++|+|+||++|.+++....+.+.++++||+||
T Consensus 103 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDE 181 (237)
T 3bor_A 103 VLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE-MQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 181 (237)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTTTCCEEEECC--------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEES
T ss_pred EEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH-HHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECC
Confidence 999999999999999999988777777777766543321 1122223489999999999999988888889999999999
Q ss_pred chhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeec
Q 011104 256 ADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVK 313 (493)
Q Consensus 256 ah~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 313 (493)
||++.+ .+|...+..++..++. ..|+++||||+++.+..++..++.+|..+.+.
T Consensus 182 ah~~~~-~~~~~~l~~i~~~~~~---~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 182 ADEMLS-RGFKDQIYEIFQKLNT---SIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp HHHHHH-TTCHHHHHHHHHHSCT---TCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred chHhhc-cCcHHHHHHHHHhCCC---CCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 999987 4898888888877754 78999999999999999999999988777543
No 56
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=8.2e-36 Score=274.42 Aligned_cols=222 Identities=28% Similarity=0.477 Sum_probs=179.5
Q ss_pred CCCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCC---------
Q 011104 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN--------- 168 (493)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~--------- 168 (493)
+..+|+++++++.++++|.. +||..|+++|.++++.++.| +++++++|||||||++|++|++..+...
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~--~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~ 97 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILL-ASYQRPTPIQKNAIPAILEH--RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSK 97 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTT-TTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------C
T ss_pred ccCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCChHHHHHHHHHHHHHHhhccccccccc
Confidence 67789999999999999986 99999999999999999999 9999999999999999999999887432
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCe
Q 011104 169 LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRL 248 (493)
Q Consensus 169 ~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 248 (493)
..++++||++||++|+.|+++.+++++...++.+....++....... .....+++|+|+||++|.+++....+.+.++
T Consensus 98 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 98 TAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQI--REVQMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHH--HHHSSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred cCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHH--HHhCCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 23468999999999999999999999887777777777765443211 1123468999999999999999888889999
Q ss_pred eEEEEecchhhhcccCCHHHHHHHHHHhhhc-CCCeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEE
Q 011104 249 KILVYDEADHMLDEAGFRDDSLRIMKDIERS-SGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQY 325 (493)
Q Consensus 249 ~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~-~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (493)
++||+||||++.+ .+|...+..++..+... ....|+++||||+++.+..++..++.+|..+.+.........+.|+
T Consensus 176 ~~lViDEah~~~~-~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q~ 252 (253)
T 1wrb_A 176 KYIVLDEADRMLD-MGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQE 252 (253)
T ss_dssp CEEEEETHHHHHH-TTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC------------
T ss_pred CEEEEeCHHHHHh-CchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCceec
Confidence 9999999999997 48999999888754321 1257999999999999999999999999888777665555555543
No 57
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=3.2e-35 Score=264.27 Aligned_cols=206 Identities=31% Similarity=0.512 Sum_probs=177.5
Q ss_pred CCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEc
Q 011104 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (493)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 178 (493)
..+|+++++++.+++.+.. +||..|+++|.++++.++.| +++++++|||||||++|++|++..+.....++++||++
T Consensus 3 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 79 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKT-LRFYKPTEIQERIIPGALRG--ESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITA 79 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHT--CCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEc
Confidence 4579999999999999987 99999999999999999999 99999999999999999999999987766778999999
Q ss_pred CCHHHHHHHHHHHHHHhccc----CceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEe
Q 011104 179 PTRELAIQNLEVLRKMGKHT----GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYD 254 (493)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlD 254 (493)
||++|+.|+++.++++.... ++.+.+..++.... ........+++|+|+||++|.+++....+.+.++++||+|
T Consensus 80 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViD 157 (219)
T 1q0u_A 80 PTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQ--KALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVD 157 (219)
T ss_dssp SSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHH--HTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEEC
T ss_pred CcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHH--HHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEc
Confidence 99999999999999998765 56666666654322 1222333468999999999999998888888999999999
Q ss_pred cchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeec
Q 011104 255 EADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVK 313 (493)
Q Consensus 255 Eah~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 313 (493)
|||++.+ .+|...+..++..++. ..|+++||||++.++..++..++.+|..+.+.
T Consensus 158 Eah~~~~-~~~~~~l~~i~~~~~~---~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 158 EADLMLD-MGFITDVDQIAARMPK---DLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp SHHHHHH-TTCHHHHHHHHHTSCT---TCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred CchHHhh-hChHHHHHHHHHhCCc---ccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 9999997 4898888888877754 78999999999999999999999999877543
No 58
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=3.2e-35 Score=266.15 Aligned_cols=212 Identities=28% Similarity=0.428 Sum_probs=175.3
Q ss_pred CCCCCCCCCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCC
Q 011104 92 GDTPYTSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKA 171 (493)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~ 171 (493)
++..+....+|+++++++.+++.+.. +||..|+++|.++++.++.| +++++++|||||||++|++|++..+.....+
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~ 92 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRA-AGFERPSPVQLKAIPLGRCG--LDLIVQAKSGTGKTCVFSTIALDSLVLENLS 92 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHHHCCTTSCS
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCCcHHHHHHHHHHHHHHhcCCC
Confidence 44555667789999999999999987 99999999999999999999 9999999999999999999999998766667
Q ss_pred CeEEEEcCCHHHHHHHHHHHHHHhccc-CceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeE
Q 011104 172 PQALCICPTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKI 250 (493)
Q Consensus 172 ~~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 250 (493)
+++||++||++|+.|+++.++.++... ++.+....++........ ...+++|+|+||++|.+++....+.+.++++
T Consensus 93 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~ 169 (230)
T 2oxc_A 93 TQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKT---RLKKCHIAVGSPGRIKQLIELDYLNPGSIRL 169 (230)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHH---HTTSCSEEEECHHHHHHHHHTTSSCGGGCCE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHH---hccCCCEEEECHHHHHHHHhcCCcccccCCE
Confidence 899999999999999999999998654 677776766654322111 1125899999999999999888888899999
Q ss_pred EEEecchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeee
Q 011104 251 LVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFV 312 (493)
Q Consensus 251 iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 312 (493)
||+||||++.+...|...+..++..++. ..|+++||||+++.+..++..++.+|..+.+
T Consensus 170 lViDEah~~~~~~~~~~~~~~i~~~~~~---~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 170 FILDEADKLLEEGSFQEQINWIYSSLPA---SKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp EEESSHHHHHSTTSSHHHHHHHHHHSCS---SCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred EEeCCchHhhcCcchHHHHHHHHHhCCC---CCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999742399988888887764 6799999999999999998888888776543
No 59
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.3e-34 Score=261.59 Aligned_cols=209 Identities=33% Similarity=0.539 Sum_probs=176.5
Q ss_pred CCCCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEE
Q 011104 97 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALC 176 (493)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~li 176 (493)
....+|+++++++.+++.+.. +||..|+++|.++++.++.| +++++++|||+|||++|++|+++.+.....++++||
T Consensus 11 ~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~li 87 (224)
T 1qde_A 11 KVVYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEG--HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALM 87 (224)
T ss_dssp CCCCCGGGGTCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEE
T ss_pred cccCChhhcCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcC--CCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEE
Confidence 345689999999999999987 99999999999999999999 999999999999999999999999877777889999
Q ss_pred EcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecc
Q 011104 177 ICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEA 256 (493)
Q Consensus 177 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEa 256 (493)
++|+++|+.|+++.+..++...++.+....++........ ....++|+|+||++|.+++......+.++++||+|||
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEa 164 (224)
T 1qde_A 88 LAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEA 164 (224)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcCh
Confidence 9999999999999999998887888777777654332111 1123899999999999999988888899999999999
Q ss_pred hhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccc
Q 011104 257 DHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKE 315 (493)
Q Consensus 257 h~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 315 (493)
|++.+ .+|...+..++..++. ..|+++||||+++.+..++..++.+|..+.+...
T Consensus 165 h~~~~-~~~~~~l~~i~~~~~~---~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 165 DEMLS-SGFKEQIYQIFTLLPP---TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp HHHHH-TTCHHHHHHHHHHSCT---TCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred hHHhh-hhhHHHHHHHHHhCCc---cCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99987 4898888888877654 7899999999999999999999999887766543
No 60
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.1e-35 Score=319.63 Aligned_cols=323 Identities=16% Similarity=0.137 Sum_probs=217.2
Q ss_pred CCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCce
Q 011104 122 QKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT 201 (493)
Q Consensus 122 ~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~ 201 (493)
..|+|+|..++..++.....+++++++||+|||++++..+...+.. ....++|||||+ .|+.||...+.+.. ++.
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-g~~~rvLIVvP~-sLl~Qw~~E~~~~f---~l~ 226 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-GAAERVLIIVPE-TLQHQWLVEMLRRF---NLR 226 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-SSCCCEEEECCT-TTHHHHHHHHHHHS---CCC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEeCH-HHHHHHHHHHHHHh---CCC
Confidence 3689999999999887544689999999999999987777655433 234479999999 99999999987665 233
Q ss_pred eeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHc-CccCCCCeeEEEEecchhhhcccCCHHHHHHHHHHhhhcC
Q 011104 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA-KKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSS 280 (493)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~ 280 (493)
+..+.+.................+|+|+|++.|...... ..+...++++||+||||++.............+..+...
T Consensus 227 v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~- 305 (968)
T 3dmq_A 227 FALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEH- 305 (968)
T ss_dssp CEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTT-
T ss_pred EEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhc-
Confidence 332222211000011112223578999999988542211 123355789999999999976322222223344444321
Q ss_pred CCeeEEEEeeecCh----hHHHHHHH----------------------------Hhcc-C--------------------
Q 011104 281 GHCQVLLFSATFNE----TVKNFVTR----------------------------IVKD-Y-------------------- 307 (493)
Q Consensus 281 ~~~q~v~~SAT~~~----~~~~~~~~----------------------------~~~~-~-------------------- 307 (493)
..+++++|||+-. ++..++.. +... +
T Consensus 306 -~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~ 384 (968)
T 3dmq_A 306 -VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEP 384 (968)
T ss_dssp -CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSST
T ss_pred -CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHH
Confidence 3469999999732 11111000 0000 0
Q ss_pred -----------------------------ceeeec--c---ccccccCceEEEEeC------------------------
Q 011104 308 -----------------------------NQLFVK--K---EELSLESVKQYKVYC------------------------ 329 (493)
Q Consensus 308 -----------------------------~~~~~~--~---~~~~~~~~~~~~~~~------------------------ 329 (493)
..+... . ...+..........+
T Consensus 385 l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (968)
T 3dmq_A 385 LLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRA 464 (968)
T ss_dssp TGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGT
T ss_pred HHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHH
Confidence 000000 0 000000111111111
Q ss_pred --------------------CChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh-CCCcEEEecCCCCHHH
Q 011104 330 --------------------PDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD-FGYEVTTIMGATIQEE 388 (493)
Q Consensus 330 --------------------~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~-~~~~~~~l~~~~~~~~ 388 (493)
.....|...+...+.. ..++++||||+++..++.++..|.. .|+.+..+||+|++.+
T Consensus 465 ~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~ 542 (968)
T 3dmq_A 465 RDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIE 542 (968)
T ss_dssp HHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTH
T ss_pred hhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHH
Confidence 1122355556654444 3478999999999999999999994 6999999999999999
Q ss_pred HHHHHHHHHcCC--CcEEEEeCccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEE
Q 011104 389 RDKIVKEFKDGL--TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNL 461 (493)
Q Consensus 389 r~~~~~~f~~g~--~~vLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l 461 (493)
|..+++.|++|+ +.|||||+++++|+|+|++++||+|++| .++..|.||+||+||.|+.|.|+++
T Consensus 543 R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p--------~~~~~~~Q~~GR~~R~Gq~~~v~v~ 609 (968)
T 3dmq_A 543 RDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLP--------FNPDLLEQRIGRLDRIGQAHDIQIH 609 (968)
T ss_dssp HHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCC--------SSHHHHHHHHHTTSCSSSCSCCEEE
T ss_pred HHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCC--------CCHHHHHHHhhccccCCCCceEEEE
Confidence 999999999998 9999999999999999999999999999 7889999999999999998865544
No 61
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.1e-33 Score=281.43 Aligned_cols=330 Identities=15% Similarity=0.145 Sum_probs=236.2
Q ss_pred HhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHH-hccCCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Q 011104 116 YVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGML-SRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (493)
Q Consensus 116 ~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l-~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (493)
...+|+. |+++|-.+.-.+..| + |..+.||+|||+++.+|++ +.+ .+..+.|++|++.||.|-++++..+
T Consensus 69 ~R~lg~r-~~dvQligg~~L~~G--~--iaEM~TGEGKTLva~lp~~lnAL----~G~~vhVvT~ndyLA~rdae~m~~l 139 (822)
T 3jux_A 69 RRTLGMR-PFDVQVMGGIALHEG--K--VAEMKTGEGKTLAATMPIYLNAL----IGKGVHLVTVNDYLARRDALWMGPV 139 (822)
T ss_dssp HHHTSCC-CCHHHHHHHHHHHTT--C--EEECCTTSCHHHHTHHHHHHHHT----TSSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHhCCC-CcHHHHHHHHHHhCC--C--hhhccCCCCccHHHHHHHHHHHh----cCCceEEEeccHHHHHhHHHHHHHH
Confidence 3346766 999999998888887 3 9999999999999999987 444 4667999999999999999999999
Q ss_pred hcccCceeeEeecCCC---------------------CC-------------------------cccccCCCCCCCcEEE
Q 011104 195 GKHTGITSECAVPTDS---------------------TN-------------------------YVPISKRPPVTAQVVI 228 (493)
Q Consensus 195 ~~~~~~~~~~~~~~~~---------------------~~-------------------------~~~~~~~~~~~~~Ilv 228 (493)
...+|+++.+...... .. .....++....|||.+
T Consensus 140 ~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItY 219 (822)
T 3jux_A 140 YLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTY 219 (822)
T ss_dssp HHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEE
T ss_pred HHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEE
Confidence 9999999998887210 00 0001111112479999
Q ss_pred eCchHHH-HHHHc------CccCCCCeeEEEEecchhhhccc--------C----CHHHH---HH---------------
Q 011104 229 GTPGTIK-KWMSA------KKLGFSRLKILVYDEADHMLDEA--------G----FRDDS---LR--------------- 271 (493)
Q Consensus 229 ~Tp~~l~-~~l~~------~~~~~~~~~~iVlDEah~l~~~~--------~----~~~~~---~~--------------- 271 (493)
+|..-|- +.|+. .......+.+.||||+|.++-+. | -.+.+ ..
T Consensus 220 gTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vde 299 (822)
T 3jux_A 220 GTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDE 299 (822)
T ss_dssp EEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECC
T ss_pred ccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEc
Confidence 9998763 33432 12234678899999999753210 0 00000 00
Q ss_pred -----------------------------------HHHHhhhc---CC--------------------------------
Q 011104 272 -----------------------------------IMKDIERS---SG-------------------------------- 281 (493)
Q Consensus 272 -----------------------------------i~~~~~~~---~~-------------------------------- 281 (493)
+...+... ..
T Consensus 300 k~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLH 379 (822)
T 3jux_A 300 KARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLH 379 (822)
T ss_dssp SSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHH
T ss_pred ccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHH
Confidence 00000000 00
Q ss_pred -----------------------------CeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeCCCh
Q 011104 282 -----------------------------HCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDE 332 (493)
Q Consensus 282 -----------------------------~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (493)
=.++.+||+|.......+...+. ...+.+ +...+.....+....+...
T Consensus 380 QaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~--l~vv~I-Ptnkp~~R~d~~d~vy~t~ 456 (822)
T 3jux_A 380 QAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYG--MEVVVI-PTHKPMIRKDHDDLVFRTQ 456 (822)
T ss_dssp HHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSC--CCEEEC-CCSSCCCCEECCCEEESSH
T ss_pred HHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhC--CeEEEE-CCCCCcceeecCcEEEecH
Confidence 01788999999887766544442 223333 2222333333322334466
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCcccc
Q 011104 333 LAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLAR 412 (493)
Q Consensus 333 ~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~ 412 (493)
..|...+...+......+.++||||+|++.++.++..|...|+.+..+||++.+.++..+...|+.| .|+|||++++|
T Consensus 457 ~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgR 534 (822)
T 3jux_A 457 KEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGR 534 (822)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTT
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhC
Confidence 7788888887777655678999999999999999999999999999999996555555555555555 69999999999
Q ss_pred CCCCC--------CCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCcc
Q 011104 413 GFDQQ--------QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDD 467 (493)
Q Consensus 413 Gldi~--------~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~ 467 (493)
|+||+ +..+||+++.| .|...|+||+|||||.|.+|.+++|++..++
T Consensus 535 GtDI~lg~~V~~~GglhVInte~P--------es~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 535 GTDIKLGPGVAELGGLCIIGTERH--------ESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp TCCCCCCTTTTTTTSCEEEESSCC--------SSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred CcCccCCcchhhcCCCEEEecCCC--------CCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 99998 66799999999 8999999999999999999999999998764
No 62
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.1e-35 Score=266.19 Aligned_cols=208 Identities=28% Similarity=0.431 Sum_probs=173.4
Q ss_pred CCCCCCCCccc-CCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCC----
Q 011104 94 TPYTSATTFED-LNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN---- 168 (493)
Q Consensus 94 ~~~~~~~~~~~-~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~---- 168 (493)
..+.+..+|++ +++++.+++++.+ +||..|+++|.++++.++.| +|+++++|||||||++|++|++..+...
T Consensus 13 ~~p~p~~~f~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~ 89 (228)
T 3iuy_A 13 LIPKPTCRFKDAFQQYPDLLKSIIR-VGILKPTPIQSQAWPIILQG--IDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89 (228)
T ss_dssp CCCCCCCSHHHHHTTCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred cCCCChhhHhhhhccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCChHHHHHHHHHHHHHHhccchh
Confidence 34556778998 7999999999987 89999999999999999999 9999999999999999999999877532
Q ss_pred --CCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCC
Q 011104 169 --LKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFS 246 (493)
Q Consensus 169 --~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~ 246 (493)
..++++||++||++|+.|+++.++++. ..++.+.+.+++....... .....+++|+|+||++|.+++......+.
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~ 166 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQI--EDISKGVDIIIATPGRLNDLQMNNSVNLR 166 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CH--HHHHSCCSEEEECHHHHHHHHHTTCCCCT
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHH--HHhcCCCCEEEECHHHHHHHHHcCCcCcc
Confidence 357789999999999999999999986 3466666666665433211 11223579999999999999988888899
Q ss_pred CeeEEEEecchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceee
Q 011104 247 RLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLF 311 (493)
Q Consensus 247 ~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~ 311 (493)
++++||+||||++.+ .+|...+..++..+.. +.|+++||||+++.+..++..++.+|..+.
T Consensus 167 ~~~~lViDEah~~~~-~~~~~~~~~i~~~~~~---~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 167 SITYLVIDEADKMLD-MEFEPQIRKILLDVRP---DRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp TCCEEEECCHHHHHH-TTCHHHHHHHHHHSCS---SCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred cceEEEEECHHHHhc-cchHHHHHHHHHhCCc---CCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 999999999999998 4899999999887755 789999999999999999999999887665
No 63
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1e-34 Score=258.60 Aligned_cols=202 Identities=33% Similarity=0.511 Sum_probs=174.9
Q ss_pred CCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcC
Q 011104 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (493)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 179 (493)
.+|+++++++.+++.+.. +||..|+++|.++++.++.| +++++++|||||||++|++|++..+.....++++||++|
T Consensus 3 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 79 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFE-MGWEKPSPIQEESIPIALSG--RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVP 79 (206)
T ss_dssp SSGGGSCCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHTT--CCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccC--CCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeC
Confidence 479999999999999987 99999999999999999999 999999999999999999999999877667789999999
Q ss_pred CHHHHHHHHHHHHHHhccc-CceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchh
Q 011104 180 TRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADH 258 (493)
Q Consensus 180 t~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~ 258 (493)
|++|+.|+++.++.+.... +..+....++...... ......+++|+|+||++|.+++......+.++++||+||||+
T Consensus 80 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 80 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDD--IMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHH--HHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHH--HHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 9999999999999998766 5666666665433221 112234689999999999999998888889999999999999
Q ss_pred hhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCcee
Q 011104 259 MLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQL 310 (493)
Q Consensus 259 l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~ 310 (493)
+.+ .+|...+..++..++. +.|+++||||+++.+..++..++.+|..+
T Consensus 158 ~~~-~~~~~~l~~i~~~~~~---~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLS-QDFVQIMEDIILTLPK---NRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTS-TTTHHHHHHHHHHSCT---TCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHh-hCcHHHHHHHHHhCCc---cceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 987 5898888888877754 68999999999999999999999887654
No 64
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=2.4e-35 Score=269.63 Aligned_cols=206 Identities=32% Similarity=0.452 Sum_probs=178.2
Q ss_pred CCCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEE
Q 011104 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCI 177 (493)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil 177 (493)
...+|+++++++.+++.+.. +||..|+++|.++++.++.| +++++++|||||||++|++|++..+.....++++||+
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~--~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil 117 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQ-LGWTKPTKIQIEAIPLALQG--RDIIGLAETGSGKTGAFALPILNALLETPQRLFALVL 117 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEE
T ss_pred ccCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCC--CCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEE
Confidence 35679999999999999987 99999999999999999999 9999999999999999999999888766667789999
Q ss_pred cCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHc-CccCCCCeeEEEEecc
Q 011104 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA-KKLGFSRLKILVYDEA 256 (493)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~iVlDEa 256 (493)
+||++|+.|+++.+++++...++.+.+..++...... ......+++|+|+||++|.+++.. ..+.+.++++||+|||
T Consensus 118 ~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEa 195 (249)
T 3ber_A 118 TPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQ--SLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEA 195 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHH--HHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSH
T ss_pred eCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHH--HHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcCh
Confidence 9999999999999999988888888777776543221 111223589999999999999886 4567889999999999
Q ss_pred hhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeee
Q 011104 257 DHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFV 312 (493)
Q Consensus 257 h~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 312 (493)
|++.+ .+|...+..++..++. ..|+++||||++..+..++..++.+|..+.+
T Consensus 196 h~l~~-~~~~~~l~~i~~~~~~---~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 196 DRILN-MDFETEVDKILKVIPR---DRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHH-TTCHHHHHHHHHSSCS---SSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhhhc-cChHHHHHHHHHhCCC---CCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 99997 4899998888877654 6899999999999999999999999887654
No 65
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.2e-33 Score=286.45 Aligned_cols=312 Identities=18% Similarity=0.194 Sum_probs=212.0
Q ss_pred CCchHHHhhhhhhc----CCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhccc
Q 011104 123 KPSKIQAISLPMIL----TPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (493)
Q Consensus 123 ~~~~~Q~~~i~~il----~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (493)
.|+|+|.++++.+. .+ ++++++++||+|||++++..+. .+.......++|||||+ .|+.||.+.++++....
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~--~~~ilad~~GlGKT~~ai~~i~-~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~~~ 112 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLG--FGICLADDMGLGKTLQTIAVFS-DAKKENELTPSLVICPL-SVLKNWEEELSKFAPHL 112 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTT--CCEEECCCTTSCHHHHHHHHHH-HHHHTTCCSSEEEEECS-TTHHHHHHHHHHHCTTS
T ss_pred cchHHHHHHHHHHHHHhhCC--CCEEEEeCCCCcHHHHHHHHHH-HHHhcCCCCCEEEEccH-HHHHHHHHHHHHHCCCc
Confidence 58999999998773 45 7899999999999999655443 33333345689999995 58899999999987543
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhcccCCHHHHHHHHHHhhh
Q 011104 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIER 278 (493)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~ 278 (493)
.+....+.... ......+|+|+||+++..... +....+++||+||||++.+. . ......+..+.
T Consensus 113 --~v~~~~g~~~~-------~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~-~--~~~~~~l~~l~- 176 (500)
T 1z63_A 113 --RFAVFHEDRSK-------IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNP-Q--TKIFKAVKELK- 176 (500)
T ss_dssp --CEEECSSSTTS-------CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCT-T--SHHHHHHHTSC-
T ss_pred --eEEEEecCchh-------ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCH-h--HHHHHHHHhhc-
Confidence 33333333211 122357899999999865433 33456899999999999763 2 22333444442
Q ss_pred cCCCeeEEEEeeecCh-hHHHHH------------------------------------HHHhccCceeeecccc----c
Q 011104 279 SSGHCQVLLFSATFNE-TVKNFV------------------------------------TRIVKDYNQLFVKKEE----L 317 (493)
Q Consensus 279 ~~~~~q~v~~SAT~~~-~~~~~~------------------------------------~~~~~~~~~~~~~~~~----~ 317 (493)
..+.+++|||+.. ...++. ..++. +..+...... .
T Consensus 177 ---~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~-~~~lrr~k~~~~~~~ 252 (500)
T 1z63_A 177 ---SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIIS-PFILRRTKYDKAIIN 252 (500)
T ss_dssp ---EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHT-TTEECCCTTCHHHHT
T ss_pred ---cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHh-hHeeeecccccchhh
Confidence 3578999999742 222211 11111 1111110000 0
Q ss_pred cccCceEEEEeCCC--h------------------------------------------------------HHHHHHHHH
Q 011104 318 SLESVKQYKVYCPD--E------------------------------------------------------LAKVMVIRD 341 (493)
Q Consensus 318 ~~~~~~~~~~~~~~--~------------------------------------------------------~~~~~~l~~ 341 (493)
.........+.++. . ..|...+.+
T Consensus 253 ~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~ 332 (500)
T 1z63_A 253 DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTME 332 (500)
T ss_dssp TSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHH
T ss_pred cCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHH
Confidence 11122222222221 0 123333444
Q ss_pred HHHHhcccCCcEEEEcCChhhHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHHcC-CCc-EEEEeCccccCCCCCC
Q 011104 342 RIFELGEKMGQTIIFVRTKNSASALHKALKDF-GYEVTTIMGATIQEERDKIVKEFKDG-LTQ-VLISTDVLARGFDQQQ 418 (493)
Q Consensus 342 ~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~l~~~~~~~~r~~~~~~f~~g-~~~-vLv~T~~~~~Gldi~~ 418 (493)
.+......+.++||||++...+..++..|... ++.+..+||++++.+|.++++.|++| ... +|++|+++++|+|+|.
T Consensus 333 ~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~ 412 (500)
T 1z63_A 333 IIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTS 412 (500)
T ss_dssp HHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTT
T ss_pred HHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhh
Confidence 45555556789999999999999999999875 99999999999999999999999998 454 7899999999999999
Q ss_pred CCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceE--EEEeeCCc
Q 011104 419 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVV--FNLLMDGD 466 (493)
Q Consensus 419 v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~--i~l~~~~~ 466 (493)
+++||+|++| .++..|.||+||++|.|+.+.+ +.|++.+.
T Consensus 413 ~~~vi~~d~~--------~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 413 ANRVIHFDRW--------WNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp CSEEEESSCC--------SCC---CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred CCEEEEeCCC--------CCcchHHHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 9999999999 5677899999999999977654 66776554
No 66
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=264.40 Aligned_cols=219 Identities=26% Similarity=0.400 Sum_probs=180.3
Q ss_pred cCCCCCCCCCCcccC----CCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccC
Q 011104 91 TGDTPYTSATTFEDL----NLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166 (493)
Q Consensus 91 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~ 166 (493)
.+...+.+..+|+++ ++++.+++.+.. +||..|+++|.++++.++.| +++++++|||||||++|++|++..+.
T Consensus 16 ~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~l~~a~TGsGKT~~~~l~~l~~l~ 92 (245)
T 3dkp_A 16 QGTDLPDPIATFQQLDQEYKINSRLLQNILD-AGFQMPTPIQMQAIPVMLHG--RELLASAPTGSGKTLAFSIPILMQLK 92 (245)
T ss_dssp ESSSCCCCCSSHHHHHHHHCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHC
T ss_pred cCCCCCCcccCHHHhhhccCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCCcHHHHHHHHHHHHHh
Confidence 345566677889887 899999999987 99999999999999999999 99999999999999999999998886
Q ss_pred C-CCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcC--cc
Q 011104 167 P-NLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK--KL 243 (493)
Q Consensus 167 ~-~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~--~~ 243 (493)
. ...++++||++||++|+.|+++.+++++...++.+....++.... .........+++|+|+||++|.+++... .+
T Consensus 93 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~ 171 (245)
T 3dkp_A 93 QPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA-KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGI 171 (245)
T ss_dssp SCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH-TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSC
T ss_pred hcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH-HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCc
Confidence 4 335678999999999999999999999887777666555443211 1122233457899999999999999876 46
Q ss_pred CCCCeeEEEEecchhhhcc--cCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeeccc
Q 011104 244 GFSRLKILVYDEADHMLDE--AGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKE 315 (493)
Q Consensus 244 ~~~~~~~iVlDEah~l~~~--~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 315 (493)
.+.++++||+||||++.++ .+|...+..++..+.. .+.|+++||||+++++..++..++.+|..+.+...
T Consensus 172 ~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 172 DLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS--HKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp CCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC--TTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred ccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCC--CCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 7889999999999999873 4788888777766533 36799999999999999999999999988876543
No 67
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=3.6e-34 Score=260.66 Aligned_cols=207 Identities=30% Similarity=0.478 Sum_probs=175.2
Q ss_pred CCCCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCC----CCCCC
Q 011104 97 TSATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP----NLKAP 172 (493)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~----~~~~~ 172 (493)
....+|+++++++.+++.+.. +||..|+++|.++++.++.| +++++++|||||||++|++|++..+.. ...++
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~--~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~ 98 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGLQE-AQYRLVTEIQKQTIGLALQG--KDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGL 98 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred cccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCc
Confidence 346689999999999999987 99999999999999999999 999999999999999999999987642 23467
Q ss_pred eEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcC-ccCCCCeeEE
Q 011104 173 QALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAK-KLGFSRLKIL 251 (493)
Q Consensus 173 ~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~-~~~~~~~~~i 251 (493)
++||++||++|+.|+++.++.++...++.+.+.+++......... ..+++|+|+||++|.+++... .+.+.++++|
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~l 175 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER---INNINILVCTPGRLLQHMDETVSFHATDLQML 175 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHH---HTTCSEEEECHHHHHHHHHHCSSCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHh---CCCCCEEEECHHHHHHHHHhcCCcccccccEE
Confidence 899999999999999999999988877887777776543321111 135799999999999988765 4667899999
Q ss_pred EEecchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeeec
Q 011104 252 VYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFVK 313 (493)
Q Consensus 252 VlDEah~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 313 (493)
|+||||++.+ .+|...+..++..++. .+|+++||||+++.+..+...++.+|..+.+.
T Consensus 176 ViDEah~~~~-~~~~~~~~~i~~~~~~---~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 176 VLDEADRILD-MGFADTMNAVIENLPK---KRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp EETTHHHHHH-TTTHHHHHHHHHTSCT---TSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred EEeChHHHhc-CCcHHHHHHHHHhCCC---CCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 9999999987 5899888888887765 78999999999999999999999988877654
No 68
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=4.8e-34 Score=256.93 Aligned_cols=206 Identities=28% Similarity=0.467 Sum_probs=172.0
Q ss_pred CCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEc
Q 011104 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (493)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 178 (493)
..+|+++++++.+++.+.. +||..|+++|.++++.++.| +++++++|||+|||++|++|++..+.....++++||++
T Consensus 13 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 89 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILG--MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC 89 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHH-TTCCCCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEEC
T ss_pred CCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEe
Confidence 4579999999999999987 99999999999999999999 99999999999999999999999887666667999999
Q ss_pred CCHHHHHHHHHHHHHHhccc-CceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecch
Q 011104 179 PTRELAIQNLEVLRKMGKHT-GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (493)
Q Consensus 179 Pt~~La~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah 257 (493)
||++|+.|+++.++++.... ++.+....++....... .......++|+|+||++|..++....+.+.++++||+||||
T Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~-~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah 168 (220)
T 1t6n_A 90 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE-EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 168 (220)
T ss_dssp SCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH-HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH-HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHH
Confidence 99999999999999998765 56666666654322111 00111246899999999999998888888999999999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceee
Q 011104 258 HMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLF 311 (493)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~ 311 (493)
++....+|...+..++..++. ..|+++||||++..+..++..++.+|..+.
T Consensus 169 ~~~~~~~~~~~~~~i~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 169 KMLEQLDMRRDVQEIFRMTPH---EKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHSSHHHHHHHHHHHHTSCS---SSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHhcccCcHHHHHHHHHhCCC---cCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 998645677777777665543 789999999999999999999998887653
No 69
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=4e-34 Score=263.64 Aligned_cols=202 Identities=29% Similarity=0.421 Sum_probs=167.6
Q ss_pred CCCCcccCC--CCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCC----CCC
Q 011104 98 SATTFEDLN--LSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPN----LKA 171 (493)
Q Consensus 98 ~~~~~~~~~--~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~----~~~ 171 (493)
...+|++++ +++.+++.+.. +||..|+++|.++++.++.| +|++++||||||||++|++|++..+... ..+
T Consensus 50 ~~~~f~~l~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~ 126 (262)
T 3ly5_A 50 EDTSFASLCNLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEG--RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNG 126 (262)
T ss_dssp GGGCC-----CCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHHT--CCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred ccCChhHhccccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCC--CcEEEEccCCCCchHHHHHHHHHHHHhccccccCC
Confidence 345677777 99999999987 99999999999999999999 9999999999999999999999876432 246
Q ss_pred CeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCc-cCCCCeeE
Q 011104 172 PQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKI 250 (493)
Q Consensus 172 ~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~-~~~~~~~~ 250 (493)
.++||++||++|+.|+++.+++++...+..+....++...... ......+++|+|+||++|.+++.... +.+.++++
T Consensus 127 ~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~ 204 (262)
T 3ly5_A 127 TGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE--AQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQC 204 (262)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHH--HHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHH--HHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCE
Confidence 7899999999999999999999998888887777776543221 11112247899999999999887753 67889999
Q ss_pred EEEecchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCc
Q 011104 251 LVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYN 308 (493)
Q Consensus 251 iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~ 308 (493)
||+||||++.+ .+|...+..++..++. .+|+++||||+++.+..+++.++..+.
T Consensus 205 lViDEah~l~~-~~~~~~l~~i~~~~~~---~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 205 LVIDEADRILD-VGFEEELKQIIKLLPT---RRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp EEECSHHHHHH-TTCHHHHHHHHHHSCS---SSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred EEEcChHHHhh-hhHHHHHHHHHHhCCC---CCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999998 5899999999888765 679999999999999999988877543
No 70
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=2e-33 Score=250.49 Aligned_cols=201 Identities=33% Similarity=0.497 Sum_probs=169.9
Q ss_pred CcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCC---CCCCCeEEEE
Q 011104 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP---NLKAPQALCI 177 (493)
Q Consensus 101 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~---~~~~~~~lil 177 (493)
+|+++++++.+++.+.. +||..|+++|.++++.++.| +++++++|||+|||++|++|++..+.. ...++++||+
T Consensus 2 ~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~--~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil 78 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHG-RGLTTPTPIQAAALPLALEG--KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVL 78 (207)
T ss_dssp CGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTT--CCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEE
T ss_pred ChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHcCC--CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEE
Confidence 69999999999999987 99999999999999999999 999999999999999999999988754 2356789999
Q ss_pred cCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecch
Q 011104 178 CPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEAD 257 (493)
Q Consensus 178 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah 257 (493)
+|+++|+.|+++.++.+... +.+....++...... ......+++|+|+||++|.+++....+.+.++++||+||||
T Consensus 79 ~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah 154 (207)
T 2gxq_A 79 TPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQ--KEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEAD 154 (207)
T ss_dssp CSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHH--HHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHH
T ss_pred ECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHH--HHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChh
Confidence 99999999999999998765 445555555433211 11111257899999999999999888889999999999999
Q ss_pred hhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHhccCceeee
Q 011104 258 HMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIVKDYNQLFV 312 (493)
Q Consensus 258 ~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 312 (493)
++.+ .+|...+..++..++. ..|+++||||+++.+..++..++.+|..+.+
T Consensus 155 ~~~~-~~~~~~~~~i~~~~~~---~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 155 EMLS-MGFEEEVEALLSATPP---SRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHH-TTCHHHHHHHHHTSCT---TSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred Hhhc-cchHHHHHHHHHhCCc---cCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 9987 4898888888776654 7899999999999999999999998876643
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=1.3e-32 Score=293.38 Aligned_cols=332 Identities=13% Similarity=0.103 Sum_probs=212.2
Q ss_pred CCCchHHHhhhhhhcCC------------CCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHH
Q 011104 122 QKPSKIQAISLPMILTP------------PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLE 189 (493)
Q Consensus 122 ~~~~~~Q~~~i~~il~~------------~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~ 189 (493)
..|+|+|..+++.++.+ .+++++++++||||||+++ ++++..+.......++|||||+++|+.|+.+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 35999999999998751 1268999999999999997 6666655443345699999999999999999
Q ss_pred HHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCc--cCCCCeeEEEEecchhhhcccCCHH
Q 011104 190 VLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK--LGFSRLKILVYDEADHMLDEAGFRD 267 (493)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~--~~~~~~~~iVlDEah~l~~~~~~~~ 267 (493)
.+..++... +.++.+..... .......++|+|+||++|..++.... ..+..+.+||+||||++.. ..
T Consensus 349 ~f~~f~~~~------v~~~~s~~~l~-~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~----~~ 417 (1038)
T 2w00_A 349 EYQRFSPDS------VNGSENTAGLK-RNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF----GE 417 (1038)
T ss_dssp HHHTTSTTC------SSSSCCCHHHH-HHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH----HH
T ss_pred HHHHhcccc------cccccCHHHHH-HHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc----hH
Confidence 998876431 11222111100 00012357899999999999876542 2356789999999999764 12
Q ss_pred HHHHHHHHhhhcCCCeeEEEEeeecChhHH----HHHHHHhccCceeeeccc---cccccCceEEEEeC---------C-
Q 011104 268 DSLRIMKDIERSSGHCQVLLFSATFNETVK----NFVTRIVKDYNQLFVKKE---ELSLESVKQYKVYC---------P- 330 (493)
Q Consensus 268 ~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---------~- 330 (493)
....+...+ ++.++++||||+..... .....++..+...+.... ......+...+... .
T Consensus 418 ~~~~I~~~~----p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~ 493 (1038)
T 2w00_A 418 AQKNLKKKF----KRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETET 493 (1038)
T ss_dssp HHHHHHHHC----SSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCC
T ss_pred HHHHHHHhC----CcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccc
Confidence 234444444 35799999999864211 011222222211110000 00000011001000 0
Q ss_pred --------------ChHHHHHHHHHHHHH----hc------ccCCcEEEEcCChhhHHHHHHHHHhCC------------
Q 011104 331 --------------DELAKVMVIRDRIFE----LG------EKMGQTIIFVRTKNSASALHKALKDFG------------ 374 (493)
Q Consensus 331 --------------~~~~~~~~l~~~l~~----~~------~~~~~~lVf~~s~~~~~~l~~~L~~~~------------ 374 (493)
........+...+.. .. ..+.++||||+|+..|..+++.|.+.+
T Consensus 494 d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~ 573 (1038)
T 2w00_A 494 DEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKP 573 (1038)
T ss_dssp CHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCC
T ss_pred cHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccccc
Confidence 011112222222211 11 124579999999999999999998754
Q ss_pred CcE-EEecCC----------C----------CH-----------------------------HHHHHHHHHHHcCCCcEE
Q 011104 375 YEV-TTIMGA----------T----------IQ-----------------------------EERDKIVKEFKDGLTQVL 404 (493)
Q Consensus 375 ~~~-~~l~~~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~vL 404 (493)
+++ .++|++ + ++ ..|..++++|++|+++||
T Consensus 574 ~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~IL 653 (1038)
T 2w00_A 574 LRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLL 653 (1038)
T ss_dssp CCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEE
T ss_pred CcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEE
Confidence 555 445542 2 22 147889999999999999
Q ss_pred EEeCccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCc----ceEEEEeeCCccHHHHHHHHHHhCC
Q 011104 405 ISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRK----GVVFNLLMDGDDMIIMEKIERYFDI 480 (493)
Q Consensus 405 v~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~----g~~i~l~~~~~~~~~~~~i~~~~~~ 480 (493)
|+|+++.+|+|+|.+ +++++|.| .+...|+||+||++|.+.. |.++.|+.. .......+..+.+.
T Consensus 654 Ivvd~lltGfDiP~l-~tlylDkp--------l~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~--~~~l~~Al~~y~~~ 722 (1038)
T 2w00_A 654 IVVGMFLTGFDAPTL-NTLFVDKN--------LRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL--ERSTIDAITLFGDK 722 (1038)
T ss_dssp EESSTTSSSCCCTTE-EEEEEESC--------CCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC--HHHHHHHHHHTSCS
T ss_pred EEcchHHhCcCcccc-cEEEEccC--------CCccceeehhhccCcCCCCCCCcEEEEEcccc--HHHHHHHHHHHhCC
Confidence 999999999999999 77889999 6678899999999998754 777776643 33344455555443
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.6e-31 Score=279.30 Aligned_cols=335 Identities=16% Similarity=0.181 Sum_probs=225.0
Q ss_pred CCchHHHhhhhhhc----CCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhccc
Q 011104 123 KPSKIQAISLPMIL----TPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (493)
Q Consensus 123 ~~~~~Q~~~i~~il----~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (493)
.+.|+|..++..++ .+ +++|++.+||+|||++++..+...+........+||||| ..|+.||.+.+.++...
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~--~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~- 311 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKG--DNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPD- 311 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTT--CCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTT-
T ss_pred CcCHHHHHHHHHHHHHhhcC--CCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCC-
Confidence 58899999998775 56 899999999999999976655444333334557899999 67889999999998754
Q ss_pred CceeeEeecCCCCCcc----------cccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhcccCCHHH
Q 011104 199 GITSECAVPTDSTNYV----------PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDD 268 (493)
Q Consensus 199 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~~~~~~~ 268 (493)
..+.+..|....... ..........+|+|+|++.+...... +....+++||+||||++.+. ...
T Consensus 312 -~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~---~s~ 385 (800)
T 3mwy_W 312 -LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNA---ESS 385 (800)
T ss_dssp -CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCS---SSH
T ss_pred -ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCc---hhH
Confidence 334444443321110 00012334678999999999764332 22346889999999999652 122
Q ss_pred HHHHHHHhhhcCCCeeEEEEeeecC-h---hHHHHHHHHh---------------------------c--cCceeeeccc
Q 011104 269 SLRIMKDIERSSGHCQVLLFSATFN-E---TVKNFVTRIV---------------------------K--DYNQLFVKKE 315 (493)
Q Consensus 269 ~~~i~~~~~~~~~~~q~v~~SAT~~-~---~~~~~~~~~~---------------------------~--~~~~~~~~~~ 315 (493)
....+..+. ....+++|||+- . ++-.++..+. . .+..+.-...
T Consensus 386 ~~~~l~~l~----~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~ 461 (800)
T 3mwy_W 386 LYESLNSFK----VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKK 461 (800)
T ss_dssp HHHHHTTSE----EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGG
T ss_pred HHHHHHHhh----hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHH
Confidence 333444442 346799999972 1 1111111110 0 0001100000
Q ss_pred c--ccccCceEEEEeCCC--------------------------------------------------------------
Q 011104 316 E--LSLESVKQYKVYCPD-------------------------------------------------------------- 331 (493)
Q Consensus 316 ~--~~~~~~~~~~~~~~~-------------------------------------------------------------- 331 (493)
. ..+.......+.++.
T Consensus 462 dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~ 541 (800)
T 3mwy_W 462 DVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGK 541 (800)
T ss_dssp GGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----
T ss_pred hhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhccccc
Confidence 0 001111111111110
Q ss_pred ------------hHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcC
Q 011104 332 ------------ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG 399 (493)
Q Consensus 332 ------------~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g 399 (493)
...|+..+...+......+.++||||+....+..+...|...|+.+..+||+++..+|..+++.|+++
T Consensus 542 ~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~ 621 (800)
T 3mwy_W 542 MTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSP 621 (800)
T ss_dssp CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSST
T ss_pred ccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCC
Confidence 12244455555666666678999999999999999999999999999999999999999999999986
Q ss_pred CC---cEEEEeCccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcc--eEEEEeeCCc-cHHHHHH
Q 011104 400 LT---QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKG--VVFNLLMDGD-DMIIMEK 473 (493)
Q Consensus 400 ~~---~vLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g--~~i~l~~~~~-~~~~~~~ 473 (493)
.. .+|++|.+++.|||++.+++||+||+| .++..+.||+||++|.|+.. .++.|++.+. +..++..
T Consensus 622 ~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~--------wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~ 693 (800)
T 3mwy_W 622 DSNDFVFLLSTRAGGLGINLMTADTVVIFDSD--------WNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLER 693 (800)
T ss_dssp TCSCCCEEEEHHHHTTTCCCTTCCEEEESSCC--------SCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHH
T ss_pred CCCceEEEEecccccCCCCccccceEEEecCC--------CChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHH
Confidence 54 489999999999999999999999999 67788999999999998754 5667777664 4444555
Q ss_pred HHHHhC
Q 011104 474 IERYFD 479 (493)
Q Consensus 474 i~~~~~ 479 (493)
..+.+.
T Consensus 694 ~~~K~~ 699 (800)
T 3mwy_W 694 ARKKMI 699 (800)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 555543
No 73
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=2e-29 Score=260.89 Aligned_cols=325 Identities=14% Similarity=0.154 Sum_probs=213.0
Q ss_pred CCchHHHhhhhhhcC-------CCCccEEEeccCCCchhHHhHHHHHhccCCCC----CCCeEEEEcCCHHHHHHHHHHH
Q 011104 123 KPSKIQAISLPMILT-------PPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL----KAPQALCICPTRELAIQNLEVL 191 (493)
Q Consensus 123 ~~~~~Q~~~i~~il~-------~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~----~~~~~lil~Pt~~La~q~~~~~ 191 (493)
.+.|+|..++..++. ..+..+|++.+||+|||++++..+...+.... ...++|||||+ +|+.||.+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 478999999988741 11268999999999999997766655443221 23469999997 7889999999
Q ss_pred HHHhcccCceeeEeecCCCCCcc----c--ccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhcccCC
Q 011104 192 RKMGKHTGITSECAVPTDSTNYV----P--ISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGF 265 (493)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~~~~ 265 (493)
.++... .+.+....++...... . .........+|+|+|++.+.... ..+....+++||+||||++.+.
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~--- 207 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNS--- 207 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTT---
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCCh---
Confidence 998754 3333334333211100 0 00111234789999999987643 3344457889999999998752
Q ss_pred HHHHHHHHHHhhhcCCCeeEEEEeeecChh-H------H------------HHHHHHhc---------------------
Q 011104 266 RDDSLRIMKDIERSSGHCQVLLFSATFNET-V------K------------NFVTRIVK--------------------- 305 (493)
Q Consensus 266 ~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~-~------~------------~~~~~~~~--------------------- 305 (493)
.......+..+. ....+++|||+-.. + . .+...+..
T Consensus 208 ~~~~~~al~~l~----~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~ 283 (644)
T 1z3i_X 208 DNQTYLALNSMN----AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQK 283 (644)
T ss_dssp CHHHHHHHHHHC----CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHH
T ss_pred hhHHHHHHHhcc----cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHH
Confidence 122333344443 34689999996321 0 0 00000000
Q ss_pred --------cCceeeecccc--ccccCceEEEEeCCCh-------------------------------------------
Q 011104 306 --------DYNQLFVKKEE--LSLESVKQYKVYCPDE------------------------------------------- 332 (493)
Q Consensus 306 --------~~~~~~~~~~~--~~~~~~~~~~~~~~~~------------------------------------------- 332 (493)
.+..+.-.... ..++......+.+...
T Consensus 284 ~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp 363 (644)
T 1z3i_X 284 LQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHP 363 (644)
T ss_dssp HHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCH
Confidence 00000000000 0011111222221110
Q ss_pred ----------------------------------HHHHHHHHHHHHHhc-ccCCcEEEEcCChhhHHHHHHHHHhCCCcE
Q 011104 333 ----------------------------------LAKVMVIRDRIFELG-EKMGQTIIFVRTKNSASALHKALKDFGYEV 377 (493)
Q Consensus 333 ----------------------------------~~~~~~l~~~l~~~~-~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~ 377 (493)
..|...+...+.... ..+.++|||++....++.+...|...|+.+
T Consensus 364 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~ 443 (644)
T 1z3i_X 364 ALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLY 443 (644)
T ss_dssp HHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCE
Confidence 112222222122211 236799999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHHcCCCc---EEEEeCccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCC
Q 011104 378 TTIMGATIQEERDKIVKEFKDGLTQ---VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGR 454 (493)
Q Consensus 378 ~~l~~~~~~~~r~~~~~~f~~g~~~---vLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~ 454 (493)
..+||+++..+|..+++.|++|... +|++|+++++|||++++++||+||+| .++..|.||+||++|.|+
T Consensus 444 ~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~--------wnp~~~~Qa~gR~~R~Gq 515 (644)
T 1z3i_X 444 VRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPD--------WNPANDEQAMARVWRDGQ 515 (644)
T ss_dssp EEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCC--------SSHHHHHHHHTTSSSTTC
T ss_pred EEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCC--------CCccHHHHHHHhhhhcCC
Confidence 9999999999999999999998754 89999999999999999999999999 678889999999999997
Q ss_pred cc--eEEEEeeCCc
Q 011104 455 KG--VVFNLLMDGD 466 (493)
Q Consensus 455 ~g--~~i~l~~~~~ 466 (493)
.. .++.|++.+.
T Consensus 516 ~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 516 KKTCYIYRLLSTGT 529 (644)
T ss_dssp CSCEEEEEEEETTS
T ss_pred CCceEEEEEEECCC
Confidence 65 5666777664
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=2.6e-29 Score=254.59 Aligned_cols=241 Identities=16% Similarity=0.115 Sum_probs=175.8
Q ss_pred HhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q 011104 116 YVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (493)
Q Consensus 116 ~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (493)
...+|+ +|+++|..++|.++.| + ++.+.||+|||++|++|++.... .+.+++|++||++||.|.++++..+.
T Consensus 73 ~R~lG~-~Pt~VQ~~~ip~LlqG--~--IaeakTGeGKTLvf~Lp~~L~aL---~G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 73 KRYLGM-RHFDVQLIGGAVLHEG--K--IAEMKTGEGKTLVATLAVALNAL---TGKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp HHHTCC-CCCHHHHHHHHHHHTT--S--EEECCSTHHHHHHHHHHHHHHHT---TCSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHhCC-CCcHHHHhhcccccCC--c--eeeccCCCchHHHHHHHHHHHHH---hCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 334799 8999999999999999 6 99999999999999999953332 35579999999999999999999999
Q ss_pred cccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHH-HHHHHcCc------cCCC---CeeEEEEecchhhhcccCC
Q 011104 196 KHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI-KKWMSAKK------LGFS---RLKILVYDEADHMLDEAGF 265 (493)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l-~~~l~~~~------~~~~---~~~~iVlDEah~l~~~~~~ 265 (493)
..+++++.+++++........ ...++|+|+||++| .+++..+. +.+. .+.++||||+|.|+...+.
T Consensus 145 ~~lGLsv~~i~Gg~~~~~r~~----ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDear 220 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPAERRK----AYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEAR 220 (997)
T ss_dssp HTTTCCEEECCTTCCHHHHHH----HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTT
T ss_pred HhcCCeEEEEeCCCCHHHHHH----HcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCC
Confidence 999999999988765322222 22589999999999 78887652 4577 8999999999998732222
Q ss_pred H---------------HHHHHHHHHhhhcC--------------------------------------------------
Q 011104 266 R---------------DDSLRIMKDIERSS-------------------------------------------------- 280 (493)
Q Consensus 266 ~---------------~~~~~i~~~~~~~~-------------------------------------------------- 280 (493)
. ..+..++..++...
T Consensus 221 tPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l 300 (997)
T 2ipc_A 221 TPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMEL 300 (997)
T ss_dssp SCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHH
T ss_pred CCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHH
Confidence 1 12223333332100
Q ss_pred --------------------------------------C--------------------------------------Cee
Q 011104 281 --------------------------------------G--------------------------------------HCQ 284 (493)
Q Consensus 281 --------------------------------------~--------------------------------------~~q 284 (493)
+ =.+
T Consensus 301 ~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~k 380 (997)
T 2ipc_A 301 AHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEK 380 (997)
T ss_dssp HHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSE
T ss_pred HHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChH
Confidence 0 015
Q ss_pred EEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHH
Q 011104 285 VLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSAS 364 (493)
Q Consensus 285 ~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~ 364 (493)
+.+||+|.......+..-+--. .+. .+...+..........+.+...|...+.+.+......+.|+||+|.|++..+
T Consensus 381 LsGMTGTA~tE~~Ef~~iY~l~--Vv~-IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE 457 (997)
T 2ipc_A 381 RAGMTGTAKTEEKEFQEIYGMD--VVV-VPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSE 457 (997)
T ss_dssp EEEEESSCGGGHHHHHHHHCCC--EEE-CCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHH
T ss_pred heecCCCchHHHHHHHHHhCCC--EEE-cCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHH
Confidence 6788888776655544333222 222 2223333334444455677888898888888888888999999999999999
Q ss_pred HHHHHHH
Q 011104 365 ALHKALK 371 (493)
Q Consensus 365 ~l~~~L~ 371 (493)
.|+..|.
T Consensus 458 ~LS~~L~ 464 (997)
T 2ipc_A 458 RLSQMLK 464 (997)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999998
No 75
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=2.9e-29 Score=216.50 Aligned_cols=172 Identities=37% Similarity=0.666 Sum_probs=147.6
Q ss_pred ccccCceEEEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHH
Q 011104 317 LSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEF 396 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f 396 (493)
..+..+.|+++.++....|...+...+... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f 80 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRF 80 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHH
T ss_pred CccCCceEEEEEcCChHhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 346688999999998877888887754433 357999999999999999999999999999999999999999999999
Q ss_pred HcCCCcEEEEeCccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHH
Q 011104 397 KDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIER 476 (493)
Q Consensus 397 ~~g~~~vLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~ 476 (493)
++|...|||||+++++|+|+|++++||+|++||.+... .+...|+||+||+||.|+.|.|++|+.+. +..++..+++
T Consensus 81 ~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~--~~~~~~~qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~i~~ 157 (175)
T 2rb4_A 81 RDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEE--PDYETYLHRIGRTGRFGKKGLAFNMIEVD-ELPSLMKIQD 157 (175)
T ss_dssp HTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCS--CCHHHHHHHHCBC----CCEEEEEEECGG-GHHHHHHHHH
T ss_pred HcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCcccc--CCHHHHHHHhcccccCCCCceEEEEEccc-hHHHHHHHHH
Confidence 99999999999999999999999999999999765432 57899999999999999999999999865 5778999999
Q ss_pred HhCCCceeecCcccccC
Q 011104 477 YFDIKVTEVQTCTCETL 493 (493)
Q Consensus 477 ~~~~~~~~~~~~~~~~~ 493 (493)
.++.++++++....+++
T Consensus 158 ~~~~~~~~~~~~~~~~~ 174 (175)
T 2rb4_A 158 HFNSSIKQLNAEDMDEI 174 (175)
T ss_dssp HHTCCCEEECSSCCC--
T ss_pred HhcCcccccCCchhccc
Confidence 99999999999887764
No 76
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=3.1e-29 Score=259.02 Aligned_cols=128 Identities=20% Similarity=0.257 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCC
Q 011104 335 KVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGF 414 (493)
Q Consensus 335 ~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gl 414 (493)
+...+...+......+.++||||+++..++.++..|...|+.+..+||++++.+|..+++.|+.|.+.|||||+++++|+
T Consensus 424 ~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~Gl 503 (664)
T 1c4o_A 424 QILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGL 503 (664)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTC
T ss_pred hHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCc
Confidence 44444455555555578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCc
Q 011104 415 DQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGD 466 (493)
Q Consensus 415 di~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~ 466 (493)
|+|++++||+++.+..+. +.+..+|+||+||+||.+ .|.|++|+.+.+
T Consensus 504 Dip~v~lVI~~d~d~~G~---p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~ 551 (664)
T 1c4o_A 504 DIPEVSLVAILDADKEGF---LRSERSLIQTIGRAARNA-RGEVWLYADRVS 551 (664)
T ss_dssp CCTTEEEEEETTTTSCSG---GGSHHHHHHHHGGGTTST-TCEEEEECSSCC
T ss_pred cCCCCCEEEEeCCcccCC---CCCHHHHHHHHCccCcCC-CCEEEEEEcCCC
Confidence 999999999999832211 178899999999999995 899999987653
No 77
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=9.9e-29 Score=212.07 Aligned_cols=160 Identities=33% Similarity=0.551 Sum_probs=142.6
Q ss_pred ccCceEEEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHc
Q 011104 319 LESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398 (493)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~ 398 (493)
+..+.|+++.++. ..|...+.+.+... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++
T Consensus 3 ~~~i~q~~~~~~~-~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 79 (172)
T 1t5i_A 3 LHGLQQYYVKLKD-NEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 79 (172)
T ss_dssp --CCEEEEEECCG-GGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCCeEEEEEECCh-HHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHC
Confidence 4567888888875 45777777755543 35799999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHh
Q 011104 399 GLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYF 478 (493)
Q Consensus 399 g~~~vLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~ 478 (493)
|...|||||+++++|+|+|++++||+|++| .++..|+||+||+||.|+.|.+++|+++.++..+++.+++.+
T Consensus 80 g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p--------~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~ 151 (172)
T 1t5i_A 80 FQRRILVATNLFGRGMDIERVNIAFNYDMP--------EDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRF 151 (172)
T ss_dssp TSCSEEEESSCCSTTCCGGGCSEEEESSCC--------SSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCchhcCcchhhCCEEEEECCC--------CCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHH
Confidence 999999999999999999999999999999 789999999999999999999999998777788999999999
Q ss_pred CCCceeecCcc
Q 011104 479 DIKVTEVQTCT 489 (493)
Q Consensus 479 ~~~~~~~~~~~ 489 (493)
+.++++++...
T Consensus 152 ~~~~~~~~~~~ 162 (172)
T 1t5i_A 152 EVNISELPDEI 162 (172)
T ss_dssp CCCEEECC---
T ss_pred hcchhhCChhh
Confidence 99999998653
No 78
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.96 E-value=5.3e-28 Score=206.48 Aligned_cols=160 Identities=39% Similarity=0.669 Sum_probs=139.3
Q ss_pred cCceEEEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcC
Q 011104 320 ESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG 399 (493)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g 399 (493)
..+.|+++.++....|...+...+... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 79 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG 79 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 357888888887766888887755543 358999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHhC
Q 011104 400 LTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFD 479 (493)
Q Consensus 400 ~~~vLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~~ 479 (493)
...|||||+++++|+|+|++++||+|++| .+...|+||+||+||.|+.|.|++|+++. +..++..++++++
T Consensus 80 ~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p--------~~~~~~~qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~ 150 (165)
T 1fuk_A 80 SSRILISTDLLARGIDVQQVSLVINYDLP--------ANKENYIHRIGRGGRFGRKGVAINFVTNE-DVGAMRELEKFYS 150 (165)
T ss_dssp SCSEEEEEGGGTTTCCCCSCSEEEESSCC--------SSGGGGGGSSCSCC-----CEEEEEEETT-THHHHHHHHHHSS
T ss_pred CCEEEEEcChhhcCCCcccCCEEEEeCCC--------CCHHHHHHHhcccccCCCCceEEEEEcch-HHHHHHHHHHHHc
Confidence 99999999999999999999999999999 78899999999999999999999999865 6778899999999
Q ss_pred CCceeecCccc
Q 011104 480 IKVTEVQTCTC 490 (493)
Q Consensus 480 ~~~~~~~~~~~ 490 (493)
.++++++....
T Consensus 151 ~~~~~~~~~~~ 161 (165)
T 1fuk_A 151 TQIEELPSDIA 161 (165)
T ss_dssp CCCEECCSCCT
T ss_pred cCccccCccHH
Confidence 99999987653
No 79
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=214.99 Aligned_cols=174 Identities=27% Similarity=0.431 Sum_probs=136.1
Q ss_pred HHHhccCceeeeccccccccCceEEEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEe
Q 011104 301 TRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTI 380 (493)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l 380 (493)
..++.+|..+.+.........+.+.+..++.. .|...+.+.+.. ..+++||||+++..++.++..|...++.+..+
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~-~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~l 84 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKEE-AKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAI 84 (191)
T ss_dssp -------------------CCSEEEEEECCGG-GHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcChH-HHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 34566777777777677778899998888754 667676664433 24689999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEE
Q 011104 381 MGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFN 460 (493)
Q Consensus 381 ~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~ 460 (493)
||+|++.+|..+++.|++|+..|||||+++++|+|+|++++||+|++| .++..|+||+||+||.|+.|.|++
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p--------~~~~~~~qr~GR~gR~g~~g~~i~ 156 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMP--------EEIENYVHRIGRTGCSGNTGIATT 156 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCC--------SSHHHHHHHHTTSCC---CCEEEE
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCC--------CCHHHHHHHhCccccCCCCcEEEE
Confidence 999999999999999999999999999999999999999999999999 789999999999999999999999
Q ss_pred EeeCCccHHHHHHHHHHhCCCceeec
Q 011104 461 LLMDGDDMIIMEKIERYFDIKVTEVQ 486 (493)
Q Consensus 461 l~~~~~~~~~~~~i~~~~~~~~~~~~ 486 (493)
|+++.++..+++.+++.+......+|
T Consensus 157 l~~~~~~~~~~~~l~~~l~~~~~~~p 182 (191)
T 2p6n_A 157 FINKACDESVLMDLKALLLEAKQKVP 182 (191)
T ss_dssp EECTTSCHHHHHHHHHHHHHTTCCCC
T ss_pred EEcCchhHHHHHHHHHHHHHccCcCC
Confidence 99987778888999998866665554
No 80
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=1e-27 Score=204.19 Aligned_cols=158 Identities=32% Similarity=0.590 Sum_probs=141.3
Q ss_pred ccccCceEEEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHH
Q 011104 317 LSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEF 396 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f 396 (493)
.....+.+++..++. ..|...+...+... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|
T Consensus 5 ~~~~~i~~~~~~~~~-~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f 81 (163)
T 2hjv_A 5 LTTRNIEHAVIQVRE-ENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEF 81 (163)
T ss_dssp -CCCCEEEEEEECCG-GGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred cCcccceEEEEECCh-HHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 345568888888874 45777777755543 357999999999999999999999999999999999999999999999
Q ss_pred HcCCCcEEEEeCccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHH
Q 011104 397 KDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIER 476 (493)
Q Consensus 397 ~~g~~~vLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~ 476 (493)
++|...|||||+++++|+|+|++++||+|++| .++..|+||+||+||.|+.|.|++|+++. +..+++.+++
T Consensus 82 ~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p--------~~~~~~~qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~i~~ 152 (163)
T 2hjv_A 82 KRGEYRYLVATDVAARGIDIENISLVINYDLP--------LEKESYVHRTGRTGRAGNKGKAISFVTAF-EKRFLADIEE 152 (163)
T ss_dssp HTTSCSEEEECGGGTTTCCCSCCSEEEESSCC--------SSHHHHHHHTTTSSCTTCCEEEEEEECGG-GHHHHHHHHH
T ss_pred HcCCCeEEEECChhhcCCchhcCCEEEEeCCC--------CCHHHHHHhccccCcCCCCceEEEEecHH-HHHHHHHHHH
Confidence 99999999999999999999999999999999 78999999999999999999999999854 7778999999
Q ss_pred HhCCCceeec
Q 011104 477 YFDIKVTEVQ 486 (493)
Q Consensus 477 ~~~~~~~~~~ 486 (493)
.++.++++++
T Consensus 153 ~~~~~~~~~~ 162 (163)
T 2hjv_A 153 YIGFEIQKIE 162 (163)
T ss_dssp HHTSCCEECC
T ss_pred HHCCCcCccC
Confidence 9999998765
No 81
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.95 E-value=3.8e-27 Score=209.35 Aligned_cols=157 Identities=32% Similarity=0.498 Sum_probs=136.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCc
Q 011104 323 KQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQ 402 (493)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~ 402 (493)
.+..+.++. ..|...+.+.+... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..+
T Consensus 7 ~~~~~~~~~-~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 83 (212)
T 3eaq_A 7 EEEAVPAPV-RGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR 83 (212)
T ss_dssp CCEEEECCT-TSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC
T ss_pred eeeEEeCCH-HHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe
Confidence 344444443 45667776655433 368999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHhCCCc
Q 011104 403 VLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKV 482 (493)
Q Consensus 403 vLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~ 482 (493)
|||||+++++|+|+|++++||+|++| .+...|+||+||+||.|+.|.|++|+++. +..+++.+++.++..+
T Consensus 84 vlvaT~~~~~Gidi~~v~~Vi~~~~p--------~~~~~~~qr~GR~gR~g~~g~~~~l~~~~-~~~~~~~i~~~~~~~~ 154 (212)
T 3eaq_A 84 VLVATDVAARGLDIPQVDLVVHYRLP--------DRAEAYQHRSGRTGRAGRGGRVVLLYGPR-ERRDVEALERAVGRRF 154 (212)
T ss_dssp EEEECTTTTCSSSCCCBSEEEESSCC--------SSHHHHHHHHTTBCCCC--BEEEEEECGG-GHHHHHHHHHHHSSCC
T ss_pred EEEecChhhcCCCCccCcEEEECCCC--------cCHHHHHHHhcccCCCCCCCeEEEEEchh-HHHHHHHHHHHhcCcC
Confidence 99999999999999999999999999 78999999999999999999999999864 6788899999999999
Q ss_pred eeecCcccc
Q 011104 483 TEVQTCTCE 491 (493)
Q Consensus 483 ~~~~~~~~~ 491 (493)
+.++....+
T Consensus 155 ~~~~~~~~~ 163 (212)
T 3eaq_A 155 KRVNPPTPE 163 (212)
T ss_dssp EECCCCCHH
T ss_pred eecCCCCHH
Confidence 998876544
No 82
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=7.9e-27 Score=216.72 Aligned_cols=158 Identities=32% Similarity=0.500 Sum_probs=136.7
Q ss_pred ceEEEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 011104 322 VKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLT 401 (493)
Q Consensus 322 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~ 401 (493)
+.++++.++.. .|...+.+.+.... .+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|..
T Consensus 3 v~~~~i~~~~~-~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~ 79 (300)
T 3i32_A 3 YEEEAVPAPVR-GRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEV 79 (300)
T ss_dssp SEEEEEECCSS-SHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSC
T ss_pred eEEEEEECCHH-HHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCc
Confidence 56777777753 57777776554433 6899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHhCCC
Q 011104 402 QVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIK 481 (493)
Q Consensus 402 ~vLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~ 481 (493)
+|||||+++++|+|+|++++||+|++| .+...|+||+||+||.|+.|.|++|+++. +..+++.+++.++..
T Consensus 80 ~vLVaT~va~~Gidi~~v~~VI~~d~p--------~s~~~y~Qr~GRagR~g~~G~~i~l~~~~-e~~~~~~ie~~~~~~ 150 (300)
T 3i32_A 80 RVLVATDVAARGLDIPQVDLVVHYRMP--------DRAEAYQHRSGRTGRAGRGGRVVLLYGPR-ERRDVEALERAVGRR 150 (300)
T ss_dssp CEEEECSTTTCSTTCCCCSEEEESSCC--------SSTTHHHHHHTCCC-----CEEEEEECSS-THHHHHHHHHHHTCC
T ss_pred eEEEEechhhcCccccceeEEEEcCCC--------CCHHHHHHHccCcCcCCCCceEEEEeChH-HHHHHHHHHHHhCCc
Confidence 999999999999999999999999999 78899999999999999999999999864 677889999999999
Q ss_pred ceeecCcccc
Q 011104 482 VTEVQTCTCE 491 (493)
Q Consensus 482 ~~~~~~~~~~ 491 (493)
++.++....+
T Consensus 151 ~~~~~~~~~~ 160 (300)
T 3i32_A 151 FKRVNPPTPE 160 (300)
T ss_dssp CEECCCCCHH
T ss_pred ceEeCCCCHH
Confidence 9998876544
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=7.3e-27 Score=202.67 Aligned_cols=159 Identities=31% Similarity=0.504 Sum_probs=124.8
Q ss_pred ccccCceEEEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHH
Q 011104 317 LSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEF 396 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f 396 (493)
.....+.|.++.++. ..|...+.+.+... ...+++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|
T Consensus 15 ~~~~~i~q~~~~v~~-~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 15 STSENITQKVVWVEE-SDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp -CCTTEEEEEEECCG-GGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCCCceEEEEEeCc-HHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 446678999888875 45777777755553 3468999999999999999999999999999999999999999999999
Q ss_pred HcCCCcEEEEeCccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHH
Q 011104 397 KDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIER 476 (493)
Q Consensus 397 ~~g~~~vLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~ 476 (493)
++|...|||||+++++|+|+|++++||+|++| .++..|+||+||+||.|+.|.|++|+++. +..+++.+.+
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p--------~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~ 163 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLP--------SDIEEYVHRIGRTGRVGNLGLATSFFNER-NINITKDLLD 163 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCC--------SSHHHHHHHHTTBCCTTSCEEEEEEECGG-GGGGHHHHHH
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCC--------CCHHHHHHHccccCCCCCCcEEEEEEchh-hHHHHHHHHH
Confidence 99999999999999999999999999999999 78999999999999999999999999865 5566778888
Q ss_pred HhCCCceeec
Q 011104 477 YFDIKVTEVQ 486 (493)
Q Consensus 477 ~~~~~~~~~~ 486 (493)
.++....+++
T Consensus 164 ~l~~~~~~~~ 173 (185)
T 2jgn_A 164 LLVEAKQEVP 173 (185)
T ss_dssp HHHHTTCCCC
T ss_pred HHHhccCCCC
Confidence 8866655554
No 84
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=3.4e-26 Score=236.21 Aligned_cols=218 Identities=18% Similarity=0.207 Sum_probs=150.8
Q ss_pred eCchHHHHHHHcCccCCCCeeEEEEecchhhhccc-CCHHHHHHHHHHh-------hh------------cCCCeeEEEE
Q 011104 229 GTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEA-GFRDDSLRIMKDI-------ER------------SSGHCQVLLF 288 (493)
Q Consensus 229 ~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~~-~~~~~~~~i~~~~-------~~------------~~~~~q~v~~ 288 (493)
+||++|++++..+ .+|||||+|++.... ++.......+..+ +. .....|+++|
T Consensus 320 ~tpg~LlDyl~~~-------~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~ 392 (661)
T 2d7d_A 320 STPYTLLDYFPDD-------FMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYV 392 (661)
T ss_dssp CCCBCGGGGSCSS-------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEEE
T ss_pred CCccHHHHHcccC-------cEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEEE
Confidence 6788887766432 379999999976310 1111111111100 00 0125689999
Q ss_pred eeecChhHHHHHHHHhccCceeeeccccccccCceEEEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHH
Q 011104 289 SATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHK 368 (493)
Q Consensus 289 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~ 368 (493)
|||++...... ................. . +.+.....+...+...+......+.++||||+++..++.++.
T Consensus 393 SAT~~~~~~~~----~~~~~~~~~r~~~l~~p-~----i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~ 463 (661)
T 2d7d_A 393 SATPGPYEIEH----TDEMVEQIIRPTGLLDP-L----IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTD 463 (661)
T ss_dssp CSSCCHHHHHH----CSSCEEECCCTTCCCCC-E----EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHH
T ss_pred ecCCChhHHHh----hhCeeeeeecccCCCCC-e----EEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHH
Confidence 99987554221 11111111111111111 1 111112233444545566655567899999999999999999
Q ss_pred HHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccc
Q 011104 369 ALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGR 448 (493)
Q Consensus 369 ~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR 448 (493)
.|...|+.+..+||++++.+|..+++.|++|...|||||+++++|+|+|++++||+++.+..+. +.+..+|+||+||
T Consensus 464 ~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~---p~s~~~~iQr~GR 540 (661)
T 2d7d_A 464 YLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGF---LRSERSLIQTIGR 540 (661)
T ss_dssp HHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTT---TTSHHHHHHHHHT
T ss_pred HHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccC---CCCHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999999999832221 1789999999999
Q ss_pred cccCCCcceEEEEeeCCc
Q 011104 449 AGRFGRKGVVFNLLMDGD 466 (493)
Q Consensus 449 ~~R~g~~g~~i~l~~~~~ 466 (493)
+||. ..|.|++|+++.+
T Consensus 541 agR~-~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 541 AARN-AEGRVIMYADKIT 557 (661)
T ss_dssp TTTS-TTCEEEEECSSCC
T ss_pred ccCC-CCCEEEEEEeCCC
Confidence 9998 7899999998753
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.88 E-value=1.2e-27 Score=205.28 Aligned_cols=158 Identities=28% Similarity=0.503 Sum_probs=138.5
Q ss_pred CceEEEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCC
Q 011104 321 SVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGL 400 (493)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~ 400 (493)
.+.|++..++....|...+...+.. ...+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 4566666666545666666664443 23578999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHhCC
Q 011104 401 TQVLISTDVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDI 480 (493)
Q Consensus 401 ~~vLv~T~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~~~ 480 (493)
..|||||+++++|+|+|++++||+|++| .+...|+||+||+||.|+.|.+++|+.+. +..+++.++++++.
T Consensus 81 ~~vLvaT~~~~~Gid~~~~~~Vi~~~~p--------~~~~~~~qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~ 151 (170)
T 2yjt_D 81 VNVLVATDVAARGIDIPDVSHVFNFDMP--------RSGDTYLHRIGRTARAGRKGTAISLVEAH-DHLLLGKVGRYIEE 151 (170)
Confidence 9999999999999999999999999999 78888999999999999999999999765 66788999999999
Q ss_pred CceeecCcc
Q 011104 481 KVTEVQTCT 489 (493)
Q Consensus 481 ~~~~~~~~~ 489 (493)
+++...++.
T Consensus 152 ~~~~~~~~~ 160 (170)
T 2yjt_D 152 PIKARVIDE 160 (170)
Confidence 998877654
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.90 E-value=5e-23 Score=208.58 Aligned_cols=316 Identities=14% Similarity=0.113 Sum_probs=171.3
Q ss_pred CCCCCCchHHHhhhhh----hcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Q 011104 119 MKFQKPSKIQAISLPM----ILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (493)
Q Consensus 119 ~g~~~~~~~Q~~~i~~----il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (493)
.|| .|+|+|..++.. +..| +++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~--~~~~~~a~TGtGKT~~~l~~~~~~------~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHG--KTLLLNAKPGLGKTVFVEVLGMQL------KKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTT--CEEEEECCTTSCHHHHHHHHHHHH------TCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcC--CCEEEEcCCCCcHHHHHHHHHHhC------CCcEEEEcCCHHHHHHHHHHHHhc
Confidence 467 699999998654 4567 899999999999999999999853 568999999999999999888775
Q ss_pred hcccCceeeEeecCCC--------CCc--------------------------c-----------cccCCCCCCCcEEEe
Q 011104 195 GKHTGITSECAVPTDS--------TNY--------------------------V-----------PISKRPPVTAQVVIG 229 (493)
Q Consensus 195 ~~~~~~~~~~~~~~~~--------~~~--------------------------~-----------~~~~~~~~~~~Ilv~ 229 (493)
. +.+..+.+... ... . ...+.....++|+|+
T Consensus 75 ~----~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~ 150 (540)
T 2vl7_A 75 G----LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAM 150 (540)
T ss_dssp T----CCEEEC---------------------------------------------------------CTTGGGCSEEEE
T ss_pred C----CcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEE
Confidence 2 22221111100 000 0 001122345799999
Q ss_pred CchHHHHHHHcCcc-------CCCCeeEEEEecchhhhcccCC------HHH----------------------------
Q 011104 230 TPGTIKKWMSAKKL-------GFSRLKILVYDEADHMLDEAGF------RDD---------------------------- 268 (493)
Q Consensus 230 Tp~~l~~~l~~~~~-------~~~~~~~iVlDEah~l~~~~~~------~~~---------------------------- 268 (493)
|+..|.+....+.+ .+....++|+||||.+.....+ ...
T Consensus 151 n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~ 230 (540)
T 2vl7_A 151 TYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYINL 230 (540)
T ss_dssp ETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred ChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 99999875543222 2456789999999998431000 000
Q ss_pred ------------------------------HHHHHHHhhh--------------------------------cCC-----
Q 011104 269 ------------------------------SLRIMKDIER--------------------------------SSG----- 281 (493)
Q Consensus 269 ------------------------------~~~i~~~~~~--------------------------------~~~----- 281 (493)
+..++..+.. ..|
T Consensus 231 l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~~~ 310 (540)
T 2vl7_A 231 LIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDVNQ 310 (540)
T ss_dssp HHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCHHH
T ss_pred HHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHHHH
Confidence 0000000000 000
Q ss_pred --------CeeEEEEeeecChhHHHHHHHHhccCceeeeccccccccCceEEEEe--CCC--hH--HHHHHHHHHHHHhc
Q 011104 282 --------HCQVLLFSATFNETVKNFVTRIVKDYNQLFVKKEELSLESVKQYKVY--CPD--EL--AKVMVIRDRIFELG 347 (493)
Q Consensus 282 --------~~q~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~--~~~~~l~~~l~~~~ 347 (493)
...+|++|||+++... +...+.. ... ... +..+.+.. ++. .. .....+.+.+....
T Consensus 311 ~l~~~~~~~~~~IltSATL~p~~~-~~~~f~~-----~~~---~~~-g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~~~~ 380 (540)
T 2vl7_A 311 LIEDALNVKTFKVLMSGTLPESLT-LTNSYKI-----VVN---ESY-GRGEYYYCPNVTSELRKRNSNIPIYSILLKRIY 380 (540)
T ss_dssp HHHHHTCCSSCEEEEESSCCTTCC-CTTEEEE-----ECC---CC--CCCEEEECTTCCCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCccCCeEEEcccCCCCcc-cchhcCC-----chh---hee-cCCcceeccccCCCcccccCHHHHHHHHHHHHH
Confidence 0113777777765200 0000000 000 000 11111111 111 11 11133333333332
Q ss_pred -ccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEE--EeCccccCCCCCC----CC
Q 011104 348 -EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLI--STDVLARGFDQQQ----VN 420 (493)
Q Consensus 348 -~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv--~T~~~~~Gldi~~----v~ 420 (493)
...+++|||++|...++.+++.|.. +. ...++.. ..|..+++.|+.+. .||+ +|+.+++|||+|+ ++
T Consensus 381 ~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~ 454 (540)
T 2vl7_A 381 ENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFE 454 (540)
T ss_dssp HTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEE
T ss_pred HhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCccccc
Confidence 2457899999999999999988865 33 3445553 46889999999865 6777 7899999999998 78
Q ss_pred EEEEccCCCCCCCC-C------------CCC---------cccccccccccccCCCcceEEEEee
Q 011104 421 LIVNYDPPVKHGKH-L------------EPD---------CEVYLHRIGRAGRFGRKGVVFNLLM 463 (493)
Q Consensus 421 ~Vi~~~~p~~~~~~-~------------~~s---------~~~y~qr~GR~~R~g~~g~~i~l~~ 463 (493)
+||++++|...... + ... +..+.|.+||+.|...+-.++.++.
T Consensus 455 ~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD 519 (540)
T 2vl7_A 455 SLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCD 519 (540)
T ss_dssp EEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEES
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEc
Confidence 99999999754311 0 000 1234699999999865555555664
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.89 E-value=2.8e-23 Score=186.03 Aligned_cols=167 Identities=14% Similarity=0.101 Sum_probs=114.6
Q ss_pred CCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCC---CCCCCeEEEEcCCHHHHHH-HHHHHHHH
Q 011104 119 MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP---NLKAPQALCICPTRELAIQ-NLEVLRKM 194 (493)
Q Consensus 119 ~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~---~~~~~~~lil~Pt~~La~q-~~~~~~~~ 194 (493)
.....|+++|.++++.++.+ +++++.+|||+|||++++++++..+.. ...+.++||++|+++|+.| +.+.+..+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEG--KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTT--CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred cCCCCchHHHHHHHHHHhcC--CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 45567999999999999998 899999999999999999999876532 1235689999999999999 77888888
Q ss_pred hcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCc------cCCCCeeEEEEecchhhhcccCCHHH
Q 011104 195 GKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK------LGFSRLKILVYDEADHMLDEAGFRDD 268 (493)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~------~~~~~~~~iVlDEah~l~~~~~~~~~ 268 (493)
... ++.+....++...... .......++|+|+||++|..++.... ..+.++++||+||||++... ++...
T Consensus 107 ~~~-~~~v~~~~g~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~-~~~~~ 182 (216)
T 3b6e_A 107 LKK-WYRVIGLSGDTQLKIS--FPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE-AVYNN 182 (216)
T ss_dssp HTT-TSCEEECCC---CCCC--HHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHH
T ss_pred hcc-CceEEEEeCCcccchh--HHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC-CcHHH
Confidence 654 4555555554332211 00111247899999999999887643 55788999999999999863 45544
Q ss_pred HH-HHHHHh-hhc---------CCCeeEEEEeee
Q 011104 269 SL-RIMKDI-ERS---------SGHCQVLLFSAT 291 (493)
Q Consensus 269 ~~-~i~~~~-~~~---------~~~~q~v~~SAT 291 (493)
+. .++... ... .+..++++||||
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 183 IMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 43 222221 111 146899999998
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.8e-22 Score=182.66 Aligned_cols=159 Identities=20% Similarity=0.226 Sum_probs=116.2
Q ss_pred CCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCC--CCCeEEEEcCCHHHHHHHHHHHHHHhc-cc
Q 011104 122 QKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL--KAPQALCICPTRELAIQNLEVLRKMGK-HT 198 (493)
Q Consensus 122 ~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~--~~~~~lil~Pt~~La~q~~~~~~~~~~-~~ 198 (493)
..++++|.++++.+..| ++++++|+||||||+++.++++..+.... ...++++++|+++++.|+.+.+..... ..
T Consensus 60 ~p~~~~q~~~i~~i~~g--~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~ 137 (235)
T 3llm_A 60 LPVKKFESEILEAISQN--SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEP 137 (235)
T ss_dssp SGGGGGHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCT
T ss_pred CChHHHHHHHHHHHhcC--CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcccc
Confidence 34789999999999999 99999999999999998888887654322 345899999999999999887765433 23
Q ss_pred CceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhh-hcccCCHHHHHHHHHHhh
Q 011104 199 GITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM-LDEAGFRDDSLRIMKDIE 277 (493)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l-~~~~~~~~~~~~i~~~~~ 277 (493)
+..+...... ........++|+|+|||+|++++.. .+.++++|||||||++ ++ ++|.. ..++.+.
T Consensus 138 ~~~~g~~~~~-------~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~-~~~~~---~~l~~i~ 203 (235)
T 3llm_A 138 GKSCGYSVRF-------ESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDIN-TDFLL---VVLRDVV 203 (235)
T ss_dssp TSSEEEEETT-------EEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHH-HHHHH---HHHHHHH
T ss_pred CceEEEeech-------hhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcc-hHHHH---HHHHHHH
Confidence 3333222111 1112224578999999999999876 3889999999999986 43 34442 2233333
Q ss_pred hcCCCeeEEEEeeecChhH
Q 011104 278 RSSGHCQVLLFSATFNETV 296 (493)
Q Consensus 278 ~~~~~~q~v~~SAT~~~~~ 296 (493)
...++.|+++||||++...
T Consensus 204 ~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 204 QAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHCTTSEEEEEECSSCCHH
T ss_pred hhCCCCeEEEEecCCCHHH
Confidence 3334789999999999776
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.88 E-value=1.7e-21 Score=198.26 Aligned_cols=325 Identities=14% Similarity=0.082 Sum_probs=200.1
Q ss_pred CCchHHHhhhhhh----cCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhccc
Q 011104 123 KPSKIQAISLPMI----LTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (493)
Q Consensus 123 ~~~~~Q~~~i~~i----l~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (493)
.|+|.|...+..+ ..| +++++.||||+|||++|++|++. .+++++|++||++|+.|+.+.+..+....
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~--~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~ 74 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNN--FLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKR 74 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTT--CEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSS
T ss_pred CCCHHHHHHHHHHHHHHHcC--CcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhc
Confidence 4889999877644 466 89999999999999999999997 46789999999999999999998887666
Q ss_pred CceeeEeecCCCCCcc---------------ccc----------------------------------CCCCCCCcEEEe
Q 011104 199 GITSECAVPTDSTNYV---------------PIS----------------------------------KRPPVTAQVVIG 229 (493)
Q Consensus 199 ~~~~~~~~~~~~~~~~---------------~~~----------------------------------~~~~~~~~Ilv~ 229 (493)
++++..+.|....-.. ..+ +.....++|+|+
T Consensus 75 ~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~ 154 (551)
T 3crv_A 75 NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIAL 154 (551)
T ss_dssp CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEE
T ss_pred CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEe
Confidence 6665554432100000 000 001125799999
Q ss_pred CchHHHHHHHcCccCC-CCeeEEEEecchhhhcccC--------------------------------------------
Q 011104 230 TPGTIKKWMSAKKLGF-SRLKILVYDEADHMLDEAG-------------------------------------------- 264 (493)
Q Consensus 230 Tp~~l~~~l~~~~~~~-~~~~~iVlDEah~l~~~~~-------------------------------------------- 264 (493)
||+.|.+......+.+ ....++||||||.+.+ ..
T Consensus 155 ~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~ 233 (551)
T 3crv_A 155 TYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEK 233 (551)
T ss_dssp ETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSS
T ss_pred CchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999988765544333 4678999999998754 10
Q ss_pred ----------CHHHHHHHH----------------------------HHh-------------------------hhcCC
Q 011104 265 ----------FRDDSLRIM----------------------------KDI-------------------------ERSSG 281 (493)
Q Consensus 265 ----------~~~~~~~i~----------------------------~~~-------------------------~~~~~ 281 (493)
+.+.+..+. ..+ .-...
T Consensus 234 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~ 313 (551)
T 3crv_A 234 YIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLND 313 (551)
T ss_dssp CEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGC
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhc
Confidence 011111111 000 00011
Q ss_pred C-eeEEEEeeecChhHHHHHHHHhccC-ceee---eccccccccCceEEEEe--CCC--h---HHHHHHHHHHHHHhcc-
Q 011104 282 H-CQVLLFSATFNETVKNFVTRIVKDY-NQLF---VKKEELSLESVKQYKVY--CPD--E---LAKVMVIRDRIFELGE- 348 (493)
Q Consensus 282 ~-~q~v~~SAT~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~--~~~--~---~~~~~~l~~~l~~~~~- 348 (493)
. ..+|++|||+.+ . ..+...+.-. .... ...-..+...-...++. .+. . ......+.+.+.....
T Consensus 314 ~~~svIltSaTL~~-~-~~~~~~lGl~~~~~~~~~~~~~~spf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~ 391 (551)
T 3crv_A 314 NELSIILMSGTLPP-R-EYMEKVWGIKRNMLYLDVEREIQKRVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ 391 (551)
T ss_dssp TTCEEEEEESSCCC-H-HHHHHTSCCCSCEEEEEHHHHTTSCCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEeeCCCc-H-HHHHHHhCCCCccccccceeecCCcCCCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh
Confidence 2 688999999986 3 3333333322 1110 00001111111122221 111 1 1223444444444333
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEe--CccccCCCCC---C--CCE
Q 011104 349 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIST--DVLARGFDQQ---Q--VNL 421 (493)
Q Consensus 349 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T--~~~~~Gldi~---~--v~~ 421 (493)
.++++|||++|....+.+++ ..+..++.-..+++ +...++.|+.+...||++| ..+++|||+| + ++.
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~---~~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~ 465 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMS---RISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISD 465 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHT---TCCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEE
T ss_pred CCCCEEEEecCHHHHHHHHH---hcCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeE
Confidence 45789999999999999886 34555655444555 3556777754445899998 6999999999 3 788
Q ss_pred EEEccCCCCCCCC--------C----CC-Cc---------ccccccccccccCCCcceEEEEeeC
Q 011104 422 IVNYDPPVKHGKH--------L----EP-DC---------EVYLHRIGRAGRFGRKGVVFNLLMD 464 (493)
Q Consensus 422 Vi~~~~p~~~~~~--------~----~~-s~---------~~y~qr~GR~~R~g~~g~~i~l~~~ 464 (493)
||..++|....+. + .. .. ....|.+||+-|...+..++.++.+
T Consensus 466 viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 466 VVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp EEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 9999999755421 0 11 11 1125899999998766666666643
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.86 E-value=8.3e-22 Score=183.69 Aligned_cols=154 Identities=18% Similarity=0.117 Sum_probs=117.7
Q ss_pred CCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCcee
Q 011104 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS 202 (493)
Q Consensus 123 ~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~ 202 (493)
.|+++|.++++.++.+ ++.+++++||+|||++++.++...+.. ...++||++|+++|+.|+.+.+.+++......+
T Consensus 113 ~l~~~Q~~ai~~~l~~--~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~ 188 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVN--RRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFSHAMI 188 (282)
T ss_dssp CCCHHHHHHHHHHHHH--SEEEECCCTTSCHHHHHHHHHHHHHHH--CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGE
T ss_pred CccHHHHHHHHHHHhc--CCeEEEcCCCCCcHHHHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhcccccceE
Confidence 7999999999999987 788999999999999998888766532 234899999999999999999999976555555
Q ss_pred eEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhcccCCHHHHHHHHHHhhhcCCC
Q 011104 203 ECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH 282 (493)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~ 282 (493)
..+.++..... ......+|+|+||+++... ....+.++++||+||||++.. ..+..++..+.. .
T Consensus 189 ~~~~~~~~~~~-----~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~-----~~~~~il~~~~~---~ 252 (282)
T 1rif_A 189 KKIGGGASKDD-----KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG-----KSISSIISGLNN---C 252 (282)
T ss_dssp EECSTTCSSTT-----CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH-----HHHHHHTTTCTT---C
T ss_pred EEEeCCCcchh-----hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc-----ccHHHHHHHhhc---C
Confidence 55555543221 2224578999999987543 223467899999999999874 244555554433 6
Q ss_pred eeEEEEeeecChhH
Q 011104 283 CQVLLFSATFNETV 296 (493)
Q Consensus 283 ~q~v~~SAT~~~~~ 296 (493)
.++++||||++...
T Consensus 253 ~~~l~lSATp~~~~ 266 (282)
T 1rif_A 253 MFKFGLSGSLRDGK 266 (282)
T ss_dssp CEEEEECSSCCTTS
T ss_pred CeEEEEeCCCCCcc
Confidence 89999999997553
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.80 E-value=2.5e-18 Score=176.13 Aligned_cols=123 Identities=12% Similarity=0.139 Sum_probs=81.1
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeC--ccccCCCCCC--CCEEEE
Q 011104 349 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD--VLARGFDQQQ--VNLIVN 424 (493)
Q Consensus 349 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~--~~~~Gldi~~--v~~Vi~ 424 (493)
.++++|||++|....+.+++.|.. +... ...+++...+..+++.|+ +.-.||+++. .+++|||+|+ .++||.
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI 522 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIIL 522 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEE
Confidence 467899999999999999988862 2222 555666678999999999 8889999984 8999999998 778999
Q ss_pred ccCCCCCCCCC------------CC---------CcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHhCC
Q 011104 425 YDPPVKHGKHL------------EP---------DCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDI 480 (493)
Q Consensus 425 ~~~p~~~~~~~------------~~---------s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~~~ 480 (493)
.+.|....+.. .. .+....|.+||+-|...+-.++.++... + +.+.+.|+.
T Consensus 523 ~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R----~-~~~~~~LP~ 594 (620)
T 4a15_A 523 AGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKR----A-GQFRKFIPD 594 (620)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGG----G-GGGGGGSTT
T ss_pred EcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccc----h-HHHHHhCCc
Confidence 99997543210 00 1122369999999987666666666432 1 444455554
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.79 E-value=7.3e-19 Score=161.29 Aligned_cols=128 Identities=19% Similarity=0.259 Sum_probs=99.3
Q ss_pred ChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHHcC-CCc-EEEEe
Q 011104 331 DELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF-GYEVTTIMGATIQEERDKIVKEFKDG-LTQ-VLIST 407 (493)
Q Consensus 331 ~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~l~~~~~~~~r~~~~~~f~~g-~~~-vLv~T 407 (493)
....|+..+.+.+......+.++||||++...++.+...|... |+.+..+||++++.+|..+++.|+++ ... +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 3456777777777776666789999999999999999999885 99999999999999999999999998 666 78999
Q ss_pred CccccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcce--EEEEeeCCc
Q 011104 408 DVLARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGV--VFNLLMDGD 466 (493)
Q Consensus 408 ~~~~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~--~i~l~~~~~ 466 (493)
+++++|+|++++++||+||+| +++..|.||+||++|.|+.+. ++.|++.+.
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~--------wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRW--------WNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCC--------SCTTTC--------------CCEEEEEEETTS
T ss_pred hhhcCCcCcccCCEEEEECCC--------CChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 999999999999999999999 567779999999999998775 467777664
No 93
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.78 E-value=1.2e-18 Score=157.14 Aligned_cols=137 Identities=21% Similarity=0.150 Sum_probs=104.5
Q ss_pred CCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCce-
Q 011104 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGIT- 201 (493)
Q Consensus 123 ~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~- 201 (493)
.|+++|..+++.++.+ ++++++++||+|||++++.++... +.+++|++|+++|+.|+.+.+.++ ++.
T Consensus 93 ~l~~~Q~~ai~~~~~~--~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~----~~~~ 160 (237)
T 2fz4_A 93 SLRDYQEKALERWLVD--KRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEY 160 (237)
T ss_dssp CCCHHHHHHHHHHTTT--SEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG----CGGG
T ss_pred CcCHHHHHHHHHHHhC--CCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC----CCCe
Confidence 6999999999999998 789999999999999998887753 457999999999999999988874 344
Q ss_pred eeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhcccCCHHHHHHHHHHhhhcCC
Q 011104 202 SECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSG 281 (493)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~ 281 (493)
+..+.+... ...+|+|+||+.+...... ....+++||+||+|++... .+ ..++..+.
T Consensus 161 v~~~~g~~~-----------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~-~~----~~i~~~~~---- 217 (237)
T 2fz4_A 161 VGEFSGRIK-----------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAE-SY----VQIAQMSI---- 217 (237)
T ss_dssp EEEESSSCB-----------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTT-TH----HHHHHTCC----
T ss_pred EEEEeCCCC-----------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCCh-HH----HHHHHhcc----
Confidence 443433321 1368999999998765542 1245899999999998763 33 23333332
Q ss_pred CeeEEEEeeecCh
Q 011104 282 HCQVLLFSATFNE 294 (493)
Q Consensus 282 ~~q~v~~SAT~~~ 294 (493)
..++++||||+..
T Consensus 218 ~~~~l~LSATp~r 230 (237)
T 2fz4_A 218 APFRLGLTATFER 230 (237)
T ss_dssp CSEEEEEEESCC-
T ss_pred CCEEEEEecCCCC
Confidence 5688999999764
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.98 E-value=4.8e-09 Score=107.39 Aligned_cols=146 Identities=21% Similarity=0.215 Sum_probs=89.5
Q ss_pred chHHHhhhhhhcCCCCccEEEeccCCCchh--HHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCcee
Q 011104 125 SKIQAISLPMILTPPYRNLIAQARNGSGKT--TCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS 202 (493)
Q Consensus 125 ~~~Q~~~i~~il~~~~~~viv~a~TGsGKT--~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~ 202 (493)
++.|+.+++.++.+ +.+++.|++|+||| ++++++.+..+.. ..+.++++++||..+|.++.+.+...+..+++..
T Consensus 151 ~~~Q~~Ai~~~l~~--~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~ 227 (608)
T 1w36_D 151 INWQKVAAAVALTR--RISVISGGPGTGKTTTVAKLLAALIQMAD-GERCRIRLAAPTGKAAARLTESLGKALRQLPLTD 227 (608)
T ss_dssp CCHHHHHHHHHHTB--SEEEEECCTTSTHHHHHHHHHHHHHHTCS-SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCS
T ss_pred CHHHHHHHHHHhcC--CCEEEEeCCCCCHHHHHHHHHHHHHHhhh-cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCH
Confidence 78999999999988 99999999999999 6677777765532 2456899999999999999988877665544321
Q ss_pred eEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhcccCCHHHHHHHHHHhhhcCCC
Q 011104 203 ECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH 282 (493)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~ 282 (493)
..... . .. ..... ..++-.+|+.. . +.........+++||||||+. ++ ...+..++..++. .
T Consensus 228 ~~~~~-~--~~--~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsm-l~----~~~~~~Ll~~l~~---~ 289 (608)
T 1w36_D 228 EQKKR-I--PE--DASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASM-ID----LPMMSRLIDALPD---H 289 (608)
T ss_dssp CCCCS-C--SC--CCBTT---TSCC-------------CTTSCCSCSEEEECSGGG-CB----HHHHHHHHHTCCT---T
T ss_pred HHHhc-c--ch--hhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechhh-CC----HHHHHHHHHhCCC---C
Confidence 11000 0 00 00000 01222233321 1 111111223689999999994 43 3456667766644 6
Q ss_pred eeEEEEeee
Q 011104 283 CQVLLFSAT 291 (493)
Q Consensus 283 ~q~v~~SAT 291 (493)
.|++++.=.
T Consensus 290 ~~liLvGD~ 298 (608)
T 1w36_D 290 ARVIFLGDR 298 (608)
T ss_dssp CEEEEEECT
T ss_pred CEEEEEcch
Confidence 788887643
No 95
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.36 E-value=1.3e-05 Score=83.39 Aligned_cols=70 Identities=19% Similarity=0.134 Sum_probs=54.1
Q ss_pred CCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCC-CCCCCeEEEEcCCHHHHHHHHHHHHHHhc
Q 011104 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-NLKAPQALCICPTRELAIQNLEVLRKMGK 196 (493)
Q Consensus 123 ~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (493)
.+++-|++++... + ..++|.|+.|||||.+.+--+...+.. .....++|++++|+..+.++.+.+..+.+
T Consensus 9 ~Ln~~Q~~av~~~--~--~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 9 SLNDKQREAVAAP--R--SNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TCCHHHHHHHTCC--S--SCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHhCC--C--CCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 5889999999742 3 579999999999999865544444433 23445899999999999999998887643
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.07 E-value=8.3e-06 Score=80.74 Aligned_cols=71 Identities=13% Similarity=0.127 Sum_probs=50.5
Q ss_pred CCCCCCchHHHhhhhhhcCC---CCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHH
Q 011104 119 MKFQKPSKIQAISLPMILTP---PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVL 191 (493)
Q Consensus 119 ~g~~~~~~~Q~~~i~~il~~---~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~ 191 (493)
+.|..+++-|+.++..++.. ....+++.|+.|||||... ..++..+.... ...+++++||...+..+.+.+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~-~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG-ETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT-CCCEEEEESSHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC-CceEEEecCcHHHHHHHHhhh
Confidence 67888999999999876432 1148999999999999763 33444433221 247899999998887766544
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.04 E-value=1.5e-05 Score=80.73 Aligned_cols=63 Identities=22% Similarity=0.142 Sum_probs=48.8
Q ss_pred CCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHH
Q 011104 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEV 190 (493)
Q Consensus 123 ~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~ 190 (493)
.+++.|+.++..++.+ +.+++.|++|+|||... ..++..+.. .+.++++++||...+..+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~--~~~~I~G~pGTGKTt~i-~~l~~~l~~--~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGH--RLVVLTGGPGTGKSTTT-KAVADLAES--LGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TCCHHHHHHHHHHTTC--SEEEEECCTTSCHHHHH-HHHHHHHHH--TTCCEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhC--CEEEEEcCCCCCHHHHH-HHHHHHHHh--cCCeEEEecCcHHHHHHhHhh
Confidence 4789999999999987 89999999999999763 233333322 356799999999988776653
No 98
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.95 E-value=6.5e-06 Score=85.17 Aligned_cols=69 Identities=23% Similarity=0.223 Sum_probs=53.6
Q ss_pred CCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q 011104 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (493)
Q Consensus 123 ~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (493)
.+++-|.+|+..++... .-.+|+||+|+|||.+..-.+.+.+. .+.++|+++||...+.++.+.+...+
T Consensus 189 ~LN~~Q~~AV~~al~~~-~~~lI~GPPGTGKT~ti~~~I~~l~~---~~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQK-ELAIIHGPPGTGKTTTVVEIILQAVK---QGLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TCCHHHHHHHHHHHHCS-SEEEEECCTTSCHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCC-CceEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEcCchHHHHHHHHHHHhcC
Confidence 46789999999988651 35799999999999885544444442 35689999999999999998876653
No 99
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.94 E-value=0.00013 Score=66.91 Aligned_cols=134 Identities=15% Similarity=0.071 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccc
Q 011104 332 ELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLA 411 (493)
Q Consensus 332 ~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 411 (493)
...|+..+..++......+.++|||++.....+.+..+|...++.+..+.|.....++ +. .+....|.+.|....
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-AA----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-hc----ccCCceEEEEECCCC
Confidence 3567777777777777778999999999999999999999999999999998654322 11 244555655566666
Q ss_pred cCCC-----CCCCCEEEEccCCCCCCCCCCCCcccccccccccccCC----CcceEEEEeeCCccHHHHHHHHHH
Q 011104 412 RGFD-----QQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFG----RKGVVFNLLMDGDDMIIMEKIERY 477 (493)
Q Consensus 412 ~Gld-----i~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g----~~g~~i~l~~~~~~~~~~~~i~~~ 477 (493)
-|++ +...+.||.||..|++.. ..+|++-|+.|.| +.=.++.|++...-+..+-.+-+.
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~-------d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~~ 249 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQ-------KDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGKK 249 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTS-------HHHHHHHCCC---------CCEEEEEETTSHHHHHHHHHHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCC-------hHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHccCC
Confidence 6675 678999999999975432 2477777776652 455789999887655555555444
No 100
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.93 E-value=3e-05 Score=79.67 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=54.4
Q ss_pred CCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Q 011104 121 FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (493)
Q Consensus 121 ~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (493)
+..+++.|..++..++.+ .-++++||+|+|||....- ++..+.. ..+.++|+++||...+.++.+.+...
T Consensus 178 ~~~ln~~Q~~av~~~l~~--~~~li~GppGTGKT~~~~~-~i~~l~~-~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQR--PLSLIQGPPGTGKTVTSAT-IVYHLAR-QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTC--SEEEEECCTTSCHHHHHHH-HHHHHHT-SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcC--CCeEEECCCCCCHHHHHHH-HHHHHHH-cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 345789999999998876 7899999999999987433 3333322 14568999999999999998887664
No 101
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.26 E-value=0.0026 Score=60.50 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=55.1
Q ss_pred CCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcc
Q 011104 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (493)
Q Consensus 123 ~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (493)
.++|+|+..+..+... +-+++..+-+.|||.+....++..+.. ..+..++++.|++..|..+.+.+..+...
T Consensus 163 ~L~p~Qk~il~~l~~~--R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSK--RMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHHS--SEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccC--cEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 5899999988766433 678999999999999866655543322 24568999999999999888877776543
No 102
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.00089 Score=70.46 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=54.1
Q ss_pred CCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q 011104 122 QKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (493)
Q Consensus 122 ~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (493)
..+++.|..++..++.+ .-++|.||+|+|||....- ++..+.. ..+.++|+++||...+.++.+.+...+
T Consensus 359 ~~Ln~~Q~~Av~~~l~~--~~~lI~GppGTGKT~~i~~-~i~~l~~-~~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQR--PLSLIQGPPGTGKTVTSAT-IVYHLSK-IHKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp CCCCHHHHHHHHHHTTC--SEEEEECSTTSSHHHHHHH-HHHHHHH-HHCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHH-HHHHHHh-CCCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 35679999999999876 6789999999999987433 2222211 135689999999999999999887753
No 103
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.97 E-value=0.0057 Score=62.35 Aligned_cols=73 Identities=15% Similarity=0.077 Sum_probs=55.8
Q ss_pred CCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhccc
Q 011104 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHT 198 (493)
Q Consensus 123 ~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~ 198 (493)
.++|+|+..+..+... +-+++..+-|+|||.+....++..+... .+..++++.|++..|..+...++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~--r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSK--RMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHC--SEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccc--cEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 4799999988776434 7799999999999998655444433322 35589999999999999988888776544
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.92 E-value=0.0013 Score=63.46 Aligned_cols=85 Identities=22% Similarity=0.206 Sum_probs=53.7
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (493)
+-.++.|+.|+|||.... +.+.. ...+|++||++++..+.+.+.+.+..
T Consensus 162 ~v~~I~G~aGsGKTt~I~----~~~~~----~~~lVlTpT~~aa~~l~~kl~~~~~~----------------------- 210 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEIL----SRVNF----EEDLILVPGRQAAEMIRRRANASGII----------------------- 210 (446)
T ss_dssp EEEEEEECTTSCHHHHHH----HHCCT----TTCEEEESCHHHHHHHHHHHTTTSCC-----------------------
T ss_pred cEEEEEcCCCCCHHHHHH----HHhcc----CCeEEEeCCHHHHHHHHHHhhhcCcc-----------------------
Confidence 567899999999998632 22211 35799999999998887765332100
Q ss_pred CCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhh
Q 011104 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHM 259 (493)
Q Consensus 221 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l 259 (493)
.....-|.|.++++. .........+++||+||+-.+
T Consensus 211 -~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 211 -VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp -CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS
T ss_pred -ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC
Confidence 011244678776542 222222234789999999744
No 105
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.89 E-value=0.0017 Score=68.23 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=53.7
Q ss_pred CCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q 011104 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMG 195 (493)
Q Consensus 123 ~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (493)
.+++.|..++..++.+ .-+++.||+|+|||.... .++..+.. ..+.++|+++||...+.++.+.+...+
T Consensus 356 ~Ln~~Q~~Av~~~l~~--~~~lI~GppGTGKT~ti~-~~i~~l~~-~~~~~ilv~a~tn~A~~~l~~~l~~~g 424 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQR--PLSLIQGPPGTGKTVTSA-TIVYHLAR-QGNGPVLVCAPSNIAVDQLTEKIHQTG 424 (800)
T ss_dssp CCCHHHHHHHHHHHTS--SEEEEECCTTSCHHHHHH-HHHHHHHT-TCSSCEEEEESSHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHhccC--CeEEEEcCCCCCHHHHHH-HHHHHHHH-cCCCcEEEEcCcHHHHHHHHHHHHHhC
Confidence 4688999999999887 789999999999998743 33333322 145689999999999999988876543
No 106
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.83 E-value=0.0097 Score=51.97 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=51.8
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (493)
.-+++.|++|+|||++.+-.+.... ..+.+++++.|...-. . ...+...+++
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~---~~g~kVli~~~~~d~r---~--~~~i~srlG~-------------------- 64 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLE---YADVKYLVFKPKIDTR---S--IRNIQSRTGT-------------------- 64 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHH---HTTCCEEEEEECCCGG---G--CSSCCCCCCC--------------------
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEEeccCch---H--HHHHHHhcCC--------------------
Confidence 6789999999999997544333322 2345788887764210 0 0001111110
Q ss_pred CCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhh
Q 011104 221 PVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHML 260 (493)
Q Consensus 221 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~ 260 (493)
.-..+.+.+...++..+.... .-..+++|||||++.+.
T Consensus 65 -~~~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 65 -SLPSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp -SSCCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSC
T ss_pred -CccccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCc
Confidence 001344667777777766532 23458899999998654
No 107
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.0065 Score=56.16 Aligned_cols=44 Identities=9% Similarity=0.123 Sum_probs=27.7
Q ss_pred CCeeEEEEecchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecC
Q 011104 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFN 293 (493)
Q Consensus 246 ~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~ 293 (493)
....+|+|||+|.+.. .+.+..++........+.-+|+.++|+.
T Consensus 131 ~~~~ii~lDE~d~l~~----q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 131 KRKTLILIQNPENLLS----EKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp SCEEEEEEECCSSSCC----THHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CCceEEEEecHHHhhc----chHHHHHHhcccccCCcEEEEEEecCcc
Confidence 4466899999999873 2445555543322233456677788864
No 108
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.81 E-value=0.002 Score=67.04 Aligned_cols=70 Identities=16% Similarity=0.101 Sum_probs=53.9
Q ss_pred CCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCC-CCCCCeEEEEcCCHHHHHHHHHHHHHHhc
Q 011104 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-NLKAPQALCICPTRELAIQNLEVLRKMGK 196 (493)
Q Consensus 123 ~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 196 (493)
.+++-|++++... + ..++|.|..|||||.+..--+...+.. .....++|+|+.|+..|.++.+.+.....
T Consensus 2 ~L~~~Q~~av~~~--~--~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--T--GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--S--SEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--C--CCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 4789999999763 3 689999999999999855444444432 23456899999999999999998887643
No 109
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.64 E-value=0.01 Score=55.72 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=25.7
Q ss_pred CCCeeEEEEecchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEe
Q 011104 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFS 289 (493)
Q Consensus 245 ~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~S 289 (493)
....+++||||+|.|.. .....+++.+...++...+++.|
T Consensus 106 ~~~~kvviIdead~l~~-----~a~naLLk~lEep~~~~~~Il~t 145 (334)
T 1a5t_A 106 LGGAKVVWVTDAALLTD-----AAANALLKTLEEPPAETWFFLAT 145 (334)
T ss_dssp TSSCEEEEESCGGGBCH-----HHHHHHHHHHTSCCTTEEEEEEE
T ss_pred cCCcEEEEECchhhcCH-----HHHHHHHHHhcCCCCCeEEEEEe
Confidence 45689999999998865 23455666666544344444444
No 110
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.63 E-value=0.0053 Score=52.07 Aligned_cols=38 Identities=18% Similarity=0.037 Sum_probs=25.7
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCH
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR 181 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 181 (493)
+-.++.|++|+|||...+--+.... ..+.+++++.|..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~---~~g~~v~~~~~~~ 41 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK---LGKKKVAVFKPKI 41 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH---HTTCEEEEEEEC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEeecc
Confidence 6788999999999997543332222 1345788888874
No 111
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.63 E-value=0.0066 Score=51.24 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=15.5
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+.+++.||+|+|||..+
T Consensus 39 ~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp CEEEECCSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 88999999999999864
No 112
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.52 E-value=0.0087 Score=50.95 Aligned_cols=38 Identities=11% Similarity=0.019 Sum_probs=27.0
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCH
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR 181 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 181 (493)
+-.++.|++|||||...+--+.... ..+.+++++.|..
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~---~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAK---IAKQKIQVFKPEI 46 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEEC-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH---HCCCEEEEEEecc
Confidence 6789999999999987544333322 2456789998874
No 113
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.45 E-value=0.0063 Score=52.40 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=27.1
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHH
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRE 182 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 182 (493)
+-.++.|+.|||||+..+--+.... ..+.+++++.|...
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~---~~g~kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQ---FAKQHAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHH---HTTCCEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH---HCCCEEEEEEeccC
Confidence 6677899999999988554444333 24557999998763
No 114
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.44 E-value=0.0027 Score=51.82 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=26.2
Q ss_pred CCeeEEEEecchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeec
Q 011104 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATF 292 (493)
Q Consensus 246 ~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~ 292 (493)
.+.+++||||++.+... . ...+..++..+... ...+++++...
T Consensus 82 ~~~~lLilDE~~~~~~~-~-~~~l~~li~~~~~~--g~~~iiits~~ 124 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNE-E-QALLFSIFNRFRNS--GKGFLLLGSEY 124 (149)
T ss_dssp GGCSEEEEESTTCCCSH-H-HHHHHHHHHHHHHH--TCCEEEEEESS
T ss_pred hCCCEEEEeCccccChH-H-HHHHHHHHHHHHHc--CCcEEEEECCC
Confidence 45789999999986542 2 45566666665542 22335556554
No 115
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.36 E-value=0.0043 Score=55.07 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=15.4
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+.+++.||+|+|||...
T Consensus 53 ~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999864
No 116
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.31 E-value=0.0055 Score=68.02 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=55.2
Q ss_pred CCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCC---CCCeEEEEcCCHHHHHHHHHHHHHHh
Q 011104 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL---KAPQALCICPTRELAIQNLEVLRKMG 195 (493)
Q Consensus 123 ~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~---~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (493)
.+|+-|.++|..- + ++++|.|..|||||.+.+--++..+.... ...++|++++|+..|..+.+.+....
T Consensus 10 ~~t~eQ~~~i~~~--~--~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--G--QDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp CCCHHHHHHHHCC--S--SCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--C--CCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 4789999998764 5 79999999999999986655665555432 45589999999999999998887643
No 117
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.28 E-value=0.0056 Score=64.01 Aligned_cols=69 Identities=20% Similarity=0.135 Sum_probs=53.5
Q ss_pred CCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCC-CCCCCeEEEEcCCHHHHHHHHHHHHHHh
Q 011104 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDP-NLKAPQALCICPTRELAIQNLEVLRKMG 195 (493)
Q Consensus 123 ~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (493)
.+++-|++++... + ..++|.|..|||||.+..--+...+.. .....++|+|+.|+..|.++.+.+..+.
T Consensus 11 ~Ln~~Q~~av~~~--~--g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 11 HLNKEQQEAVRTT--E--GPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TSCHHHHHHHHCC--S--SCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhCC--C--CCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 5889999998763 3 579999999999999855544444432 2345689999999999999998887764
No 118
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.0076 Score=58.17 Aligned_cols=56 Identities=16% Similarity=0.326 Sum_probs=39.4
Q ss_pred CCCCCcccCCCCHHHHHHHHhh--CCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 97 TSATTFEDLNLSPELLKGLYVE--MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~--~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
.+..+|++++-.....+.+... +.+..|.-++...++. . +.+++.||+|+|||+.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~---p--rGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRA---P--KGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCC---C--CEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC---C--CeeEEECcCCCCHHHHH
Confidence 3566899998888888877652 1334555555554432 2 67999999999999853
No 119
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.15 E-value=0.02 Score=53.44 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=15.3
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.||+|+|||...
T Consensus 38 ~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp SSEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 68999999999999863
No 120
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.11 E-value=0.055 Score=46.89 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=14.7
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.|++|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999853
No 121
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.10 E-value=0.029 Score=58.68 Aligned_cols=100 Identities=22% Similarity=0.236 Sum_probs=76.7
Q ss_pred EEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 011104 326 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGLT 401 (493)
Q Consensus 326 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~ 401 (493)
.+..+....|.......+......+.+++|.++++.-+...++.+.. .++.+..+||+++..++...++.+.+|..
T Consensus 393 Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~ 472 (780)
T 1gm5_A 393 LLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQI 472 (780)
T ss_dssp EEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 44445555555443333333334568999999999998888877664 37999999999999999999999999999
Q ss_pred cEEEEeCc-cccCCCCCCCCEEEEc
Q 011104 402 QVLISTDV-LARGFDQQQVNLIVNY 425 (493)
Q Consensus 402 ~vLv~T~~-~~~Gldi~~v~~Vi~~ 425 (493)
.|+|+|.. +...+.+.++.+||.-
T Consensus 473 ~IvVgT~~ll~~~~~~~~l~lVVID 497 (780)
T 1gm5_A 473 DVVIGTHALIQEDVHFKNLGLVIID 497 (780)
T ss_dssp CEEEECTTHHHHCCCCSCCCEEEEE
T ss_pred CEEEECHHHHhhhhhccCCceEEec
Confidence 99999954 5567888899998853
No 122
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.019 Score=54.64 Aligned_cols=55 Identities=16% Similarity=0.322 Sum_probs=36.6
Q ss_pred CCCCcccCCCCHHHHHHHHhhC--CCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 98 SATTFEDLNLSPELLKGLYVEM--KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~--g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
+..+|++++=-....+.+.... .+..|.-++...++. . +.+++.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~---p--rGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQ---P--KGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCC---C--CCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCC---C--CceEEeCCCCCCHHHHH
Confidence 4568999986677777765422 234454455444432 2 67999999999999853
No 123
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.95 E-value=0.019 Score=53.10 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=15.3
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.++++.||+|+|||..+
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 67999999999999864
No 124
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.92 E-value=0.022 Score=57.80 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=73.2
Q ss_pred CCchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCcee
Q 011104 123 KPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITS 202 (493)
Q Consensus 123 ~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~ 202 (493)
.+|.-|.+++..++.-.....++.|+-|.|||.+..+.+-... ..++|.+|+.+-+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~------~~~~vtAP~~~a~~~l~~~~~~--------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA------GRAIVTAPAKASTDVLAQFAGE--------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS------SCEEEECSSCCSCHHHHHHHGG---------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH------hCcEEECCCHHHHHHHHHHhhC---------
Confidence 5788999999888763224689999999999977555444332 1368999999876654443211
Q ss_pred eEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhcccCCHHHHHHHHHHhhhcCCC
Q 011104 203 ECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGH 282 (493)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~ 282 (493)
.|-+..|..+.. .....+++|||||=.+-. +.+..++. .
T Consensus 240 ----------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp~-----pll~~ll~-------~ 278 (671)
T 2zpa_A 240 ----------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIPA-----PLLHQLVS-------R 278 (671)
T ss_dssp ----------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSCH-----HHHHHHHT-------T
T ss_pred ----------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCCH-----HHHHHHHh-------h
Confidence 033335655432 134588999999976543 23333332 2
Q ss_pred eeEEEEeeecC
Q 011104 283 CQVLLFSATFN 293 (493)
Q Consensus 283 ~q~v~~SAT~~ 293 (493)
...++||.|..
T Consensus 279 ~~~v~~~tTv~ 289 (671)
T 2zpa_A 279 FPRTLLTTTVQ 289 (671)
T ss_dssp SSEEEEEEEBS
T ss_pred CCeEEEEecCC
Confidence 24688888865
No 125
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.92 E-value=0.026 Score=54.52 Aligned_cols=133 Identities=16% Similarity=0.192 Sum_probs=70.0
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEc--CCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISK 218 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (493)
..+++.|++|+|||+....-+. .+.. .+.+++++. +.|.-+ .+.+..++...++.+... ...
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~-~l~~--~G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~--~~~-------- 161 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAY-FYKK--RGYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGE--PNN-------- 161 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHH-HHHH--TTCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECC--TTC--------
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHH--cCCeEEEEecCccchhH---HHHHHHHHHhcCCceeec--ccc--------
Confidence 6889999999999987433222 2222 345666655 344333 233444444333321100 000
Q ss_pred CCCCCCcEEEeCchHHH-HHHHcCccCCCCeeEEEEecchhhh--cccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChh
Q 011104 219 RPPVTAQVVIGTPGTIK-KWMSAKKLGFSRLKILVYDEADHML--DEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNET 295 (493)
Q Consensus 219 ~~~~~~~Ilv~Tp~~l~-~~l~~~~~~~~~~~~iVlDEah~l~--~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~ 295 (493)
..|..+. ..+.. .....+++||+|++-++. ....+...+..+...+. +..-+++++|+...+
T Consensus 162 ----------~dp~~i~~~al~~--a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~---pd~vlLVlDa~~gq~ 226 (433)
T 3kl4_A 162 ----------QNPIEIAKKGVDI--FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK---PDDVILVIDASIGQK 226 (433)
T ss_dssp ----------SCHHHHHHHHHHH--TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHC---CSEEEEEEEGGGGGG
T ss_pred ----------CCHHHHHHHHHHH--HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhC---CcceEEEEeCccchH
Confidence 1233332 22222 223568899999998654 32234445555555543 356678888887666
Q ss_pred HHHHHHHHh
Q 011104 296 VKNFVTRIV 304 (493)
Q Consensus 296 ~~~~~~~~~ 304 (493)
....+..|.
T Consensus 227 a~~~a~~f~ 235 (433)
T 3kl4_A 227 AYDLASRFH 235 (433)
T ss_dssp GHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 655555554
No 126
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.78 E-value=0.02 Score=49.74 Aligned_cols=38 Identities=16% Similarity=0.041 Sum_probs=28.2
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCH
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR 181 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 181 (493)
+-.++.|+.|||||...+--+.... ..+.+++++.|..
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~---~~g~kvli~kp~~ 57 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQ---IAQYKCLVIKYAK 57 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH---TTTCCEEEEEETT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEeecC
Confidence 7789999999999988555444433 3456789888875
No 127
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.72 E-value=0.093 Score=48.79 Aligned_cols=42 Identities=17% Similarity=0.096 Sum_probs=26.2
Q ss_pred CCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCC-CccEEEeccCCCchhHHh
Q 011104 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPP-YRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~-~~~viv~a~TGsGKT~~~ 157 (493)
.+|+++--.....+.+.... ..+. ..-+++.+|+|+|||...
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l----------------~~~~~~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 23 STIDECILPAFDKETFKSIT----------------SKGKIPHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHH----------------HTTCCCSEEEECSSTTSSHHHHH
T ss_pred CCHHHHhCcHHHHHHHHHHH----------------HcCCCCeEEEeeCcCCCCHHHHH
Confidence 46777766677666665411 1221 134677788999999864
No 128
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.61 E-value=0.037 Score=53.49 Aligned_cols=55 Identities=16% Similarity=0.355 Sum_probs=36.3
Q ss_pred CCCCcccCCCCHHHHHHHHhhC--CCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 98 SATTFEDLNLSPELLKGLYVEM--KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~--g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
+..+|++++=.....+.|.... .+..|.-++...++. .+.+++.||+|+|||+.+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~p-----prGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDP-----PKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCC-----CSEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCC-----CCceEeeCCCCCcHHHHH
Confidence 4568999987777777776522 223344444433321 278999999999999853
No 129
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.54 E-value=0.083 Score=50.64 Aligned_cols=54 Identities=20% Similarity=0.176 Sum_probs=30.3
Q ss_pred CCCcccCCCCHHHHHHHHhhCCCCCCchHH-HhhhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQ-AISLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q-~~~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
...|+++.=.....+.+...... +.. ...+..+. ...+.+++.||+|+|||..+
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~----~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVIL----PSLRPELFTGLR-APARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHH----HHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHH
T ss_pred CCChHHhCCHHHHHHHHHHHHHH----hccCHHHhcccC-CCCceEEEECCCCCCHHHHH
Confidence 45688876666666666541100 000 00001111 11278999999999999864
No 130
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.46 E-value=0.13 Score=46.51 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=15.4
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.||+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 68999999999999864
No 131
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.43 E-value=0.22 Score=44.46 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=15.2
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+.+++.||+|+|||..+
T Consensus 40 ~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 67999999999999864
No 132
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.41 E-value=0.044 Score=53.48 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=15.3
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.||+|+|||..+
T Consensus 131 ~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp CCEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999864
No 133
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.37 E-value=0.029 Score=47.44 Aligned_cols=37 Identities=16% Similarity=-0.042 Sum_probs=26.1
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 180 (493)
+=.++.|++|||||.-.+-.+-.... .+.+++++.|.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~---~~~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQI---AQYKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHH---TTCCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEccc
Confidence 78899999999999664443333322 24578888887
No 134
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.36 E-value=0.074 Score=48.97 Aligned_cols=40 Identities=13% Similarity=0.262 Sum_probs=25.9
Q ss_pred CCCeeEEEEecchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEe
Q 011104 245 FSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFS 289 (493)
Q Consensus 245 ~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~S 289 (493)
....+++||||||.|... ....+++.+...++...+++.+
T Consensus 80 ~~~~kvviIdead~lt~~-----a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQ-----AANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHH-----HHHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHH-----HHHHHHHHHhCCCCCeEEEEEE
Confidence 456899999999998652 3455666666544444444444
No 135
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.31 E-value=0.056 Score=49.25 Aligned_cols=54 Identities=17% Similarity=0.350 Sum_probs=31.9
Q ss_pred CCCcccCCCCHHHHHHHHhhCC--CCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 99 ATTFEDLNLSPELLKGLYVEMK--FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~g--~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
..+|+++.-.....+.+..... ...+..++... +..+ +.+++.||+|+|||..+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~--~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVG---IEPP--KGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHC---CCCC--SEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCC--CeEEEECCCCCcHHHHH
Confidence 4568888777777777765211 11111111111 1223 78999999999999864
No 136
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.032 Score=53.84 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=35.4
Q ss_pred CCCCcccCCCCHHHHHHHHhh--CCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 98 SATTFEDLNLSPELLKGLYVE--MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~--~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
+..+|++++=.....+.+... +.+..|.-++...++. .+.+++.||+|+|||+.+
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~-----prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKP-----PKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCC-----CCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCC-----CCeEEEECCCCCcHHHHH
Confidence 456799988666766666542 1233444444433321 267999999999999863
No 137
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.22 E-value=0.11 Score=50.18 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=67.5
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEc--CCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISK 218 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (493)
.-+++.|++|+|||+...--+ ..+.. .+.+++++. |.|.-+ .+.++.++...++.+... ...
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA-~~l~~--~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~--~~~-------- 164 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLA-RYFQK--RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGN--PQE-------- 164 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHH-HHHHT--TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECC--TTC--------
T ss_pred eEEEEECcCCCCHHHHHHHHH-HHHHH--CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEec--CCC--------
Confidence 689999999999998743322 22222 345666665 555544 334455555444432111 000
Q ss_pred CCCCCCcEEEeCchHHH-HHHHcCccCCCCeeEEEEecchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHH
Q 011104 219 RPPVTAQVVIGTPGTIK-KWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVK 297 (493)
Q Consensus 219 ~~~~~~~Ilv~Tp~~l~-~~l~~~~~~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~ 297 (493)
..|..+. +.+.. .....+++||+|.+-++.........+..+.... .+..-++.+.||...+..
T Consensus 165 ----------~dp~~i~~~al~~--a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~---~pd~vlLVvDA~~gq~a~ 229 (443)
T 3dm5_A 165 ----------KDAIKLAKEGVDY--FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVI---HPHEVILVIDGTIGQQAY 229 (443)
T ss_dssp ----------CCHHHHHHHHHHH--HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHH---CCSEEEEEEEGGGGGGHH
T ss_pred ----------CCHHHHHHHHHHH--HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhh---cCceEEEEEeCCCchhHH
Confidence 1233322 22211 1123478899999865432211222233333333 235567788888766665
Q ss_pred HHHHHHh
Q 011104 298 NFVTRIV 304 (493)
Q Consensus 298 ~~~~~~~ 304 (493)
..+..|.
T Consensus 230 ~~a~~f~ 236 (443)
T 3dm5_A 230 NQALAFK 236 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 138
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.072 Score=51.30 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=35.2
Q ss_pred CCCCcccCCCCHHHHHHHHhhC--CCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 98 SATTFEDLNLSPELLKGLYVEM--KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~--g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
+..+|++.+=-....+.+.... .+..|.-++...++. . +.+++.||+|+|||+.+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~---p--rGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDP---P--RGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCC---C--CEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCC---C--ceEEEECCCCCCHHHHH
Confidence 4568999976666666665421 233344444433321 2 67999999999999853
No 139
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.18 E-value=0.096 Score=50.61 Aligned_cols=98 Identities=13% Similarity=0.184 Sum_probs=73.4
Q ss_pred EeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHHcCCCcE
Q 011104 327 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD---FGYEVTTIMGATIQEERDKIVKEFKDGLTQV 403 (493)
Q Consensus 327 ~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~v 403 (493)
+..+....|.....-.+......+.++||.++++.-+..+++.++. .++.+..+||+.+..++...++.+..|...|
T Consensus 41 v~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~I 120 (414)
T 3oiy_A 41 MVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHI 120 (414)
T ss_dssp CCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSE
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCE
Confidence 3444444554433322333335578999999999999999999988 5889999999999999999999999999999
Q ss_pred EEEeCccc----cCCCCCCCCEEEE
Q 011104 404 LISTDVLA----RGFDQQQVNLIVN 424 (493)
Q Consensus 404 Lv~T~~~~----~Gldi~~v~~Vi~ 424 (493)
+|+|.-.- .-++..++++||.
T Consensus 121 iv~Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 121 LVFSTQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp EEEEHHHHHHCHHHHTTCCCSEEEE
T ss_pred EEECHHHHHHHHHHhccccccEEEE
Confidence 99995321 1255567888875
No 140
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.14 E-value=0.014 Score=50.07 Aligned_cols=39 Identities=15% Similarity=0.059 Sum_probs=26.2
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHH
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRE 182 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 182 (493)
.-.++.|+.|||||...+-. +.+.. ..+.+++|+.|...
T Consensus 29 ~I~vitG~M~sGKTT~Llr~-~~r~~--~~g~kvli~kp~~D 67 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRR-LRRGI--YAKQKVVVFKPAID 67 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHH-HHHHH--HTTCCEEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHH-HHHHH--HcCCceEEEEeccC
Confidence 77899999999999864433 33332 23457899988753
No 141
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.045 Score=52.33 Aligned_cols=56 Identities=14% Similarity=0.319 Sum_probs=37.2
Q ss_pred CCCCCcccCCCCHHHHHHHHhh--CCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 97 TSATTFEDLNLSPELLKGLYVE--MKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~--~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
.+..+|++++=-....+.+... +.+..|.-++...++. . +.+++.||+|+|||+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~---p--rGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKP---P--KGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCC---C--SEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC---C--CCCceECCCCchHHHHH
Confidence 3456899997666666666542 2334555555554432 2 67999999999999853
No 142
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.96 E-value=0.069 Score=50.95 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=15.4
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.||+|+|||...
T Consensus 45 ~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCEEECBCTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 78999999999999864
No 143
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.93 E-value=0.1 Score=48.49 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=31.8
Q ss_pred CCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCC---CCccEEEeccCCCchhHHh
Q 011104 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP---PYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~---~~~~viv~a~TGsGKT~~~ 157 (493)
..+|++++=...+.+.+..... .|.+ .|.+..+ ..+.+++.||+|+|||+.+
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~----~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI----LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH----HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH----HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 4578888777777777754110 0111 1222211 1268999999999999864
No 144
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.88 E-value=0.099 Score=48.61 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=32.6
Q ss_pred CCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCC---CCccEEEeccCCCchhHHh
Q 011104 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP---PYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~---~~~~viv~a~TGsGKT~~~ 157 (493)
...|+++.-.....+.+.....+ |. ..|.+..+ ..+.+++.||+|+|||+.+
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~----~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVIL----PV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHH----HH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHHH----HH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 45788888778888877652211 11 11222111 1267999999999999864
No 145
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=94.78 E-value=0.037 Score=57.01 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=50.9
Q ss_pred CCchHHHhhhhhhcCC---CCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcc
Q 011104 123 KPSKIQAISLPMILTP---PYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKH 197 (493)
Q Consensus 123 ~~~~~Q~~~i~~il~~---~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 197 (493)
.|+..|..++..+..+ ..+..++.|.||||||+...- ++... ...+|||+|+..+|.|++..++.+...
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~~~-----~~~~lvv~~~~~~A~~l~~el~~~~~~ 83 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIKEV-----NKPTLVIAHNKTLAGQLYSEFKEFFPN 83 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH-----CCCEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHHHh-----CCCEEEEECCHHHHHHHHHHHHHHcCC
Confidence 5888888888765432 113577889999999987432 33332 224899999999999999999999653
No 146
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.71 E-value=0.49 Score=42.10 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=29.6
Q ss_pred CCCcccCCCCHHHHHHHHhhCC-CCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 99 ATTFEDLNLSPELLKGLYVEMK-FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
...|+++.-.....+.+..... +..|..++...+ ...+.+++.||+|+|||+.+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGG-----KIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC----------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCC-----CCCCeEEEECcCCCCHHHHH
Confidence 4578888777777666654110 111111111100 01257999999999999863
No 147
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.66 E-value=0.38 Score=45.19 Aligned_cols=43 Identities=26% Similarity=0.219 Sum_probs=27.6
Q ss_pred CCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
.+|+++--...+.+.+.... +. .+...++++.||+|+|||..+
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~-~~--------------~~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLS-DQ--------------PRDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTT-TC--------------TTCCCCEEEECSTTSSHHHHH
T ss_pred CCHHHhcCCHHHHHHHHHHH-hh--------------CCCCCeEEEECCCCCCHHHHH
Confidence 45677766777777775411 01 121134999999999999864
No 148
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.61 E-value=0.34 Score=44.45 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=31.6
Q ss_pred CCCcccCCCCHHHHHHHHhhCC--CCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 99 ATTFEDLNLSPELLKGLYVEMK--FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~g--~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
..+|+++.-.....+.+..... +..|..+.... +..+ +.+++.||+|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~---~~~~--~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPS--KGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCC--SEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcC---CCCC--ceEEEECCCCcCHHHHH
Confidence 4578888766777666654111 11111111111 1223 78999999999999864
No 149
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.55 E-value=0.12 Score=49.30 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=14.6
Q ss_pred cEEEeccCCCchhHHh
Q 011104 142 NLIAQARNGSGKTTCF 157 (493)
Q Consensus 142 ~viv~a~TGsGKT~~~ 157 (493)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999864
No 150
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.48 E-value=0.27 Score=45.50 Aligned_cols=17 Identities=35% Similarity=0.430 Sum_probs=14.8
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.||+|+|||...
T Consensus 47 ~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 36999999999999864
No 151
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.39 E-value=0.11 Score=44.41 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=15.2
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+.+++.|++|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999864
No 152
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.36 E-value=0.55 Score=44.36 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=14.7
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+.+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp SEEEEESCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999864
No 153
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.19 E-value=0.27 Score=43.31 Aligned_cols=50 Identities=10% Similarity=0.135 Sum_probs=30.2
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (493)
.-+++.|++|+|||...+--+..... .+..++++.-.. ...++.+.+..+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~-~~~~~~~~~~~~ 73 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE-HPVQVRQNMAQF 73 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS-CHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC-CHHHHHHHHHHc
Confidence 78999999999999874433333221 244677766332 334555555433
No 154
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.17 E-value=0.26 Score=45.98 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=27.5
Q ss_pred CcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhc--CCCCccEEEeccCCCchhHHh
Q 011104 101 TFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMIL--TPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 101 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il--~~~~~~viv~a~TGsGKT~~~ 157 (493)
+|+++--.....+.+.. .+.... ......+++.||+|+|||..+
T Consensus 27 ~~~~iiG~~~~~~~l~~-------------~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNV-------------FIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCSCHHHHHHHHH-------------HHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCChHHHHHHHHH-------------HHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 67777666666666654 111111 111257999999999999864
No 155
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.13 E-value=0.95 Score=39.34 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=14.7
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.|++|+|||...
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999863
No 156
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.06 E-value=0.12 Score=47.70 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=15.5
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+++++.||+|+|||..+
T Consensus 153 ~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 78999999999999864
No 157
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.98 E-value=0.22 Score=45.47 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=30.8
Q ss_pred CCCcccCCCCHHHHHHHHhhCCCCCCchHHH-hhhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQA-ISLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~-~~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
..+|+++.=.....+.+...... +... ..+..+. ...+.+++.||+|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~----~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVIL----PSVRPELFTGLR-APAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHH----HHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHh----hhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHH
Confidence 45688877677777777642110 0000 0001111 11278999999999999864
No 158
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.97 E-value=0.092 Score=50.07 Aligned_cols=17 Identities=24% Similarity=0.155 Sum_probs=15.3
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+.+++.||+|+|||...
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 67999999999999864
No 159
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.86 E-value=0.2 Score=52.32 Aligned_cols=56 Identities=20% Similarity=0.357 Sum_probs=35.6
Q ss_pred CCCCCcccCCCCHHHHHHHHhhCCC--CCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 97 TSATTFEDLNLSPELLKGLYVEMKF--QKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~g~--~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
.+...|++++-..+..+.|....-+ ..|..++...+ ...+.+++.||+|+|||+.+
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~-----~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-----TPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCC-----CCCSCCEEESSTTSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCC-----CCCceEEEecCCCCCchHHH
Confidence 3456799998888888888753222 22222211111 11267999999999999864
No 160
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.69 E-value=0.18 Score=47.49 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=29.3
Q ss_pred CCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCC---CCccEEEeccCCCchhHHh
Q 011104 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTP---PYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~---~~~~viv~a~TGsGKT~~~ 157 (493)
..+|+++.-.....+.+.....+ |. ..|.++.+ ..+.+++.||+|+|||+.+
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~----~~---~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVIL----PV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHH----HH---HCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH----HH---hCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 44677776555666666541100 00 01111111 1267999999999999864
No 161
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=93.55 E-value=0.34 Score=53.26 Aligned_cols=101 Identities=19% Similarity=0.224 Sum_probs=77.1
Q ss_pred EEEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcC
Q 011104 324 QYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDG 399 (493)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g 399 (493)
...+..+....|.......+......+.+++|.+++..-+...++.+.+ .++.+..+++..+..++...++.+..|
T Consensus 626 d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g 705 (1151)
T 2eyq_A 626 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG 705 (1151)
T ss_dssp EEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcC
Confidence 3455556666665543332333344567999999999999988888764 367899999999999999999999999
Q ss_pred CCcEEEEe-CccccCCCCCCCCEEEE
Q 011104 400 LTQVLIST-DVLARGFDQQQVNLIVN 424 (493)
Q Consensus 400 ~~~vLv~T-~~~~~Gldi~~v~~Vi~ 424 (493)
...|+|+| ..+...+.+.++.+||.
T Consensus 706 ~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 706 KIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp CCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CCCEEEECHHHHhCCccccccceEEE
Confidence 99999999 45566678888888774
No 162
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=93.51 E-value=0.27 Score=53.67 Aligned_cols=99 Identities=13% Similarity=0.193 Sum_probs=75.0
Q ss_pred EEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHHcCCCc
Q 011104 326 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD---FGYEVTTIMGATIQEERDKIVKEFKDGLTQ 402 (493)
Q Consensus 326 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~ 402 (493)
.+..+....|.....-.+......+.++||.+++++-|..+++.|+. .++.+..+||+++..++...++.+..|...
T Consensus 97 lv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~ 176 (1104)
T 4ddu_A 97 TMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH 176 (1104)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCS
T ss_pred EEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCC
Confidence 34455555555543333344445678999999999999999999998 577999999999998888999999999999
Q ss_pred EEEEeCc-ccc---CCCCCCCCEEEE
Q 011104 403 VLISTDV-LAR---GFDQQQVNLIVN 424 (493)
Q Consensus 403 vLv~T~~-~~~---Gldi~~v~~Vi~ 424 (493)
|+|+|.- +.. -+++.++++||.
T Consensus 177 IlV~Tp~rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 177 ILVFSTQFVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp EEEEEHHHHHHSHHHHHTSCCSEEEE
T ss_pred EEEECHHHHHHHHHhhcccCcCEEEE
Confidence 9999953 211 145667888885
No 163
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.48 E-value=0.17 Score=46.36 Aligned_cols=118 Identities=20% Similarity=0.115 Sum_probs=57.6
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEc--CCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISK 218 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (493)
+.+.+.|++|+|||+....-+. .+.. ..+.+++++. +.+..+. +.+..++...++.+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~-~l~~-~~G~~V~lv~~D~~r~~a~---eqL~~~~~~~gl~~~--------------- 165 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAA-ISML-EKHKKIAFITTDTYRIAAV---EQLKTYAELLQAPLE--------------- 165 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH-HHHH-TTCCCEEEEECCCSSTTHH---HHHHHHHTTTTCCCC---------------
T ss_pred cEEEEECCCCCCHHHHHHHHHH-HHHH-hcCCEEEEEecCcccchHH---HHHHHHHHhcCCCeE---------------
Confidence 7899999999999986433221 1111 1244555554 3333332 223333332222100
Q ss_pred CCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecC
Q 011104 219 RPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFN 293 (493)
Q Consensus 219 ~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~ 293 (493)
....|..+...+.. +.++++||+|.+-.... -...+..+...+....+..-++++.||..
T Consensus 166 --------~~~~~~~l~~al~~----~~~~dlvIiDT~G~~~~---~~~~~~el~~~l~~~~~~~~~lVl~at~~ 225 (296)
T 2px0_A 166 --------VCYTKEEFQQAKEL----FSEYDHVFVDTAGRNFK---DPQYIDELKETIPFESSIQSFLVLSATAK 225 (296)
T ss_dssp --------BCSSHHHHHHHHHH----GGGSSEEEEECCCCCTT---SHHHHHHHHHHSCCCTTEEEEEEEETTBC
T ss_pred --------ecCCHHHHHHHHHH----hcCCCEEEEeCCCCChh---hHHHHHHHHHHHhhcCCCeEEEEEECCCC
Confidence 00134555444442 36789999997654322 22334444444432222334677767754
No 164
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.45 E-value=0.16 Score=47.65 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=14.6
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35999999999999864
No 165
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.40 E-value=0.42 Score=43.99 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=27.1
Q ss_pred CCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 100 TTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
.+|+++--.+...+.+... +. .+....+++.||+|+|||...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~--l~--------------~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGY--VE--------------RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTT--TT--------------TTCCCCEEEESSSSSSHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHH--Hh--------------CCCCCeEEEECcCCcCHHHHH
Confidence 3566665566666666541 11 121135999999999999864
No 166
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.26 E-value=0.16 Score=46.96 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=14.6
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.++++.||+|+|||...
T Consensus 43 ~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSV 59 (323)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 34999999999999864
No 167
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.24 E-value=0.18 Score=47.93 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=15.4
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+.+++.|++|+|||...
T Consensus 46 ~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCEEEEECTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999864
No 168
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.93 E-value=1.3 Score=39.25 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=30.0
Q ss_pred CCCCcccCCCCHHHHHHHHhhC-CCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 98 SATTFEDLNLSPELLKGLYVEM-KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
+..+|+++.-.......+.... .+..+ ..+..+--...+.+++.||+|+|||...
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 3557888876666665554310 11111 1121110011145999999999999853
No 169
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.91 E-value=0.48 Score=47.20 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=15.8
Q ss_pred ccEEEeccCCCchhHHhH
Q 011104 141 RNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~ 158 (493)
+.+++.||+|+|||..+-
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 689999999999998643
No 170
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.28 E-value=0.84 Score=38.51 Aligned_cols=36 Identities=22% Similarity=0.121 Sum_probs=28.0
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 179 (493)
..+++...+|.|||.+++--++..+. .+.+++|+.-
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g---~G~rV~~vQF 64 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG---HGKNVGVVQF 64 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH---TTCCEEEEES
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEe
Confidence 47999999999999998777776663 4567888853
No 171
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.05 E-value=0.67 Score=45.65 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=27.3
Q ss_pred eeEEEEecchhhhcccC---C---HHHHHHHHHHhhhcCCCeeEEEEeeecCh
Q 011104 248 LKILVYDEADHMLDEAG---F---RDDSLRIMKDIERSSGHCQVLLFSATFNE 294 (493)
Q Consensus 248 ~~~iVlDEah~l~~~~~---~---~~~~~~i~~~~~~~~~~~q~v~~SAT~~~ 294 (493)
..+|+|||+|.+....+ . ......++..+........++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 46899999998875211 0 12233444444433335567888888443
No 172
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.94 E-value=0.32 Score=42.42 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=15.9
Q ss_pred ccEEEeccCCCchhHHhHH
Q 011104 141 RNLIAQARNGSGKTTCFVL 159 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~ 159 (493)
.-+++.|++|+|||.....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHH
Confidence 7899999999999976433
No 173
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.81 E-value=0.48 Score=44.29 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=14.1
Q ss_pred cEEEeccCCCchhHHh
Q 011104 142 NLIAQARNGSGKTTCF 157 (493)
Q Consensus 142 ~viv~a~TGsGKT~~~ 157 (493)
++++.||+|+|||..+
T Consensus 48 ~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTI 63 (340)
T ss_dssp CEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3999999999999864
No 174
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=91.80 E-value=0.56 Score=45.89 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=30.1
Q ss_pred CCCcccCCCCHHHHHHHHhhCC-CCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 99 ATTFEDLNLSPELLKGLYVEMK-FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
..+|+++.=..+..+.+..... +..|..++...+ . ..+.+++.||+|+|||+.+
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~----~-~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGA----R-MPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTC----C-CCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCC----C-CCCeEEEECCCCCCHHHHH
Confidence 4468887666666555543111 122222222111 0 1156999999999999864
No 175
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=91.67 E-value=2.6 Score=36.08 Aligned_cols=71 Identities=11% Similarity=0.317 Sum_probs=54.7
Q ss_pred CcEEEEcCChhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCc-c-----ccCCCCCCC
Q 011104 351 GQTIIFVRTKNSASALHKALKDF-----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-L-----ARGFDQQQV 419 (493)
Q Consensus 351 ~~~lVf~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~-----~~Gldi~~v 419 (493)
.++||.++++..+..+++.++.. ++.+..++|+.+...+... +..+...|+|+|.- + ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999998887764 7899999999887655443 45566799999942 1 234677788
Q ss_pred CEEEE
Q 011104 420 NLIVN 424 (493)
Q Consensus 420 ~~Vi~ 424 (493)
++||.
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88885
No 176
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.64 E-value=0.42 Score=43.61 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=16.2
Q ss_pred ccEEEeccCCCchhHHhHH
Q 011104 141 RNLIAQARNGSGKTTCFVL 159 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~ 159 (493)
.-+++.|++|+|||.....
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp CEEEEEESTTSSHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHH
Confidence 7899999999999986443
No 177
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.17 E-value=0.69 Score=42.40 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=14.8
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+-+.+.|++|+|||+..
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 67889999999999864
No 178
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=91.17 E-value=3.4 Score=35.93 Aligned_cols=146 Identities=13% Similarity=0.142 Sum_probs=76.0
Q ss_pred EEeCCChHHHHHHHHHHHHHhcc---cCCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHc
Q 011104 326 KVYCPDELAKVMVIRDRIFELGE---KMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKD 398 (493)
Q Consensus 326 ~~~~~~~~~~~~~l~~~l~~~~~---~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~ 398 (493)
.+..+....|.....-.+..... ...++||.++++..+..+++.++.. ++.+..++|+..... ....+..
T Consensus 71 li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~ 147 (237)
T 3bor_A 71 IAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQA 147 (237)
T ss_dssp EECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhc
Confidence 44556666665543332333222 3568999999999999998888754 577888888765433 2334556
Q ss_pred CCCcEEEEeC-----ccc-cCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHH
Q 011104 399 GLTQVLISTD-----VLA-RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIME 472 (493)
Q Consensus 399 g~~~vLv~T~-----~~~-~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~ 472 (493)
+...|+|+|. .+. ..+++..+++||.-..-.. ....|...+.+..+.-..+.-+.+++.--.....+
T Consensus 148 ~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~-------~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~ 220 (237)
T 3bor_A 148 EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEM-------LSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLE 220 (237)
T ss_dssp CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHH-------HHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHH
T ss_pred CCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHh-------hccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHH
Confidence 7789999993 223 3466777888775221100 00001111111111112344555665444555666
Q ss_pred HHHHHhCCC
Q 011104 473 KIERYFDIK 481 (493)
Q Consensus 473 ~i~~~~~~~ 481 (493)
.+..+++.+
T Consensus 221 ~~~~~l~~p 229 (237)
T 3bor_A 221 VTKKFMRDP 229 (237)
T ss_dssp HHHHHCSSC
T ss_pred HHHHHCCCC
Confidence 677777643
No 179
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.16 E-value=0.5 Score=46.01 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=15.0
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.||+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 47999999999999864
No 180
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.06 E-value=0.68 Score=42.89 Aligned_cols=55 Identities=9% Similarity=0.138 Sum_probs=34.3
Q ss_pred CeeEEEEecchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEeeecChhHHHHHHHHh
Q 011104 247 RLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRIV 304 (493)
Q Consensus 247 ~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~SAT~~~~~~~~~~~~~ 304 (493)
..+++++|.+.+.-........+..+...+. ++..++++.++...+....+..+.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~---~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTK---PNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHC---CSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhc---CCCCEEEEecHHHHHHHHHHHHHH
Confidence 3567889988765432233444444444443 366788899888777766666654
No 181
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=90.92 E-value=0.2 Score=41.56 Aligned_cols=124 Identities=10% Similarity=0.164 Sum_probs=74.2
Q ss_pred CchHHHhhhhhhcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceee
Q 011104 124 PSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSE 203 (493)
Q Consensus 124 ~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~ 203 (493)
..+-|..++..++....+-.++.+.-|++||...+..++..-. ..|.++.+|+|+..-+....+ ..++..
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~--~~Gr~V~vLAp~~~s~~~l~~-------~~~l~~- 104 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAR--EQGREVQIIAADRRSQMNMKQ-------DERLSG- 104 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHH--HTTCCEEEECSTTHHHHHHSC-------TTTCSS-
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHH--hcCeEEEEEcCchHHHHHHHh-------hcCcCc-
Confidence 3466888888887664467889999999999884333332211 357789999999876655332 111100
Q ss_pred EeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEEecchhhhcccCCHHHHHHHHHHhhhcCCCe
Q 011104 204 CAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHC 283 (493)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~~~~~~~ 283 (493)
+++ |- ..+......|..=+.+|||||..|.. .++..++...... +.
T Consensus 105 ---------------------~t~--t~----~~ll~~~~~~tp~s~lIVD~AekLS~-----kE~~~Lld~A~~~--na 150 (189)
T 2l8b_A 105 ---------------------ELI--TG----RRQLLEGMAFTPGSTVIVDQGEKLSL-----KETLTLLDGAARH--NV 150 (189)
T ss_dssp ---------------------CSS--ST----TTTTTTSCCCCCCCEEEEEESSSHHH-----HHHHHHHHHHHHT--TC
T ss_pred ---------------------cee--eh----hhhhcCCCCCCCCCEEEEechhhcCH-----HHHHHHHHHHHhc--CC
Confidence 000 00 01112222234455899999998875 3355566555443 56
Q ss_pred eEEEEeee
Q 011104 284 QVLLFSAT 291 (493)
Q Consensus 284 q~v~~SAT 291 (493)
|+|++--+
T Consensus 151 qvvll~~~ 158 (189)
T 2l8b_A 151 QVLITDSG 158 (189)
T ss_dssp CEEEEESS
T ss_pred EEEEeCCc
Confidence 87777655
No 182
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=90.89 E-value=6.1 Score=33.23 Aligned_cols=72 Identities=15% Similarity=0.202 Sum_probs=52.8
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCc-----c-ccCCCCCCCC
Q 011104 349 KMGQTIIFVRTKNSASALHKALKDF--GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-----L-ARGFDQQQVN 420 (493)
Q Consensus 349 ~~~~~lVf~~s~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~-~~Gldi~~v~ 420 (493)
...++||.++++..+..+++.+... ++.+..++|+.....+...+. ....|+|+|.- + ...+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3568999999999999999998876 468889999887654443332 24689999951 1 2346677888
Q ss_pred EEEE
Q 011104 421 LIVN 424 (493)
Q Consensus 421 ~Vi~ 424 (493)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 183
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=90.78 E-value=6.9 Score=34.06 Aligned_cols=71 Identities=13% Similarity=0.159 Sum_probs=53.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeC-----ccc-cCCCCCCC
Q 011104 350 MGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD-----VLA-RGFDQQQV 419 (493)
Q Consensus 350 ~~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~-~Gldi~~v 419 (493)
+.++||.+++++.+..+++.+.. .++.+..++|+.+...+...+. . ...|+|+|. .+. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 56799999999999988777664 4889999999998876655543 2 368999994 222 34578888
Q ss_pred CEEEE
Q 011104 420 NLIVN 424 (493)
Q Consensus 420 ~~Vi~ 424 (493)
++||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88885
No 184
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=90.71 E-value=3.1 Score=35.11 Aligned_cols=122 Identities=14% Similarity=0.065 Sum_probs=73.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCc-----cc-cCCCCCC
Q 011104 350 MGQTIIFVRTKNSASALHKALKDF-----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-----LA-RGFDQQQ 418 (493)
Q Consensus 350 ~~~~lVf~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~~-~Gldi~~ 418 (493)
..++||.++++..+..+++.+... +..+..++|+.........+ .+...|+|+|.- +. ..+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL----DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc----CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999999988887653 67899999998765543322 346789999952 22 3356777
Q ss_pred CCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHhCCCc
Q 011104 419 VNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKV 482 (493)
Q Consensus 419 v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~ 482 (493)
+++||.-..-.. .+ ..|...+.+..+.-..+.-+.+++.--.....+.+.++++.++
T Consensus 147 ~~~lViDEah~~------~~-~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~ 203 (206)
T 1vec_A 147 VQMIVLDEADKL------LS-QDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPY 203 (206)
T ss_dssp CCEEEEETHHHH------TS-TTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCE
T ss_pred CCEEEEEChHHh------Hh-hCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCe
Confidence 888775221100 00 1122222222221122344556665555666777788876554
No 185
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=90.47 E-value=2.2 Score=42.45 Aligned_cols=151 Identities=13% Similarity=0.102 Sum_probs=92.0
Q ss_pred EEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEE
Q 011104 325 YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVL 404 (493)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vL 404 (493)
..+..+....|.....- .... ..+.+||.++++.-+......|...++.+..+||+.+..++..++..+..|...|+
T Consensus 43 ~lv~apTGsGKTl~~~l--p~l~-~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~il 119 (523)
T 1oyw_A 43 CLVVMPTGGGKSLCYQI--PALL-LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLL 119 (523)
T ss_dssp EEEECSCHHHHHHHHHH--HHHH-SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEE
T ss_pred EEEECCCCcHHHHHHHH--HHHH-hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEE
Confidence 34556666666653321 1111 24789999999999999999999999999999999999999999999999999999
Q ss_pred EEeCc-cc-----cCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHh
Q 011104 405 ISTDV-LA-----RGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYF 478 (493)
Q Consensus 405 v~T~~-~~-----~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~ 478 (493)
++|.- +. ..+...++.+||.-..-. ... ...+...-..++++..+. .++.-+.+++.--.......+.+.+
T Consensus 120 v~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~-i~~-~g~~fr~~~~~l~~l~~~-~~~~~~i~lSAT~~~~~~~~i~~~l 196 (523)
T 1oyw_A 120 YIAPERLMLDNFLEHLAHWNPVLLAVDEAHC-ISQ-WGHDFRPEYAALGQLRQR-FPTLPFMALTATADDTTRQDIVRLL 196 (523)
T ss_dssp EECHHHHTSTTHHHHHTTSCEEEEEESSGGG-GCT-TSSCCCHHHHGGGGHHHH-CTTSCEEEEESCCCHHHHHHHHHHH
T ss_pred EECHHHHhChHHHHHHhhCCCCEEEEeCccc-cCc-CCCccHHHHHHHHHHHHh-CCCCCEEEEeCCCCHHHHHHHHHHh
Confidence 99942 11 223334566666421110 000 000111112334443222 1233344555444555566677776
Q ss_pred CCC
Q 011104 479 DIK 481 (493)
Q Consensus 479 ~~~ 481 (493)
+..
T Consensus 197 ~~~ 199 (523)
T 1oyw_A 197 GLN 199 (523)
T ss_dssp TCC
T ss_pred CCC
Confidence 643
No 186
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.47 E-value=0.8 Score=43.86 Aligned_cols=17 Identities=47% Similarity=0.458 Sum_probs=14.9
Q ss_pred ccEEE--eccCCCchhHHh
Q 011104 141 RNLIA--QARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv--~a~TGsGKT~~~ 157 (493)
..+++ .|++|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 67888 999999999864
No 187
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.46 E-value=0.44 Score=38.13 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=15.5
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.++++.|++|+|||..+
T Consensus 25 ~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp SCEEEESSTTSSHHHHH
T ss_pred CCEEEECCCCCCHHHHH
Confidence 78999999999999864
No 188
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.20 E-value=6.9 Score=34.31 Aligned_cols=71 Identities=15% Similarity=0.292 Sum_probs=53.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCc-----c--ccCCCCCC
Q 011104 350 MGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-----L--ARGFDQQQ 418 (493)
Q Consensus 350 ~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~--~~Gldi~~ 418 (493)
..++||.++++..+..+++.++.. ++.+..++|+.....+...+ .+...|+|+|.- + ..++++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 457999999999999888877654 88999999998876554433 245789999942 1 24577888
Q ss_pred CCEEEE
Q 011104 419 VNLIVN 424 (493)
Q Consensus 419 v~~Vi~ 424 (493)
+++||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 888885
No 189
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.11 E-value=0.39 Score=55.03 Aligned_cols=39 Identities=18% Similarity=0.078 Sum_probs=28.4
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHH
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRE 182 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 182 (493)
+.+++.||+|+|||..++..+.+.. ..+.+++++.....
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~---~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHA 1466 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEEcccc
Confidence 8999999999999987655544433 24567888876543
No 190
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.07 E-value=1.4 Score=39.66 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=20.4
Q ss_pred hhhcCCCCccEEEeccCCCchhHHhHHHH
Q 011104 133 PMILTPPYRNLIAQARNGSGKTTCFVLGM 161 (493)
Q Consensus 133 ~~il~~~~~~viv~a~TGsGKT~~~~~~~ 161 (493)
.-+..| .-+++.|++|+|||+.....+
T Consensus 25 ggl~~G--~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 25 PNMVAG--TVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp TTEETT--SEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCC--CEEEEEcCCCCCHHHHHHHHH
Confidence 334556 889999999999998754433
No 191
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=89.02 E-value=6.7 Score=38.51 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=29.4
Q ss_pred CCCcccCCCCHHHHHHHHhhC-CCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 99 ATTFEDLNLSPELLKGLYVEM-KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~-g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
..+|+++.-..+....+.... .+..|. .+..+-....+.+++.||+|+|||+.+
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~-----~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPS-----RFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGG-----GTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchh-----hhhhccCCCCceEEEECCCCCCHHHHH
Confidence 457888866666666554311 011111 111110001156999999999999853
No 192
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.84 E-value=1.2 Score=41.90 Aligned_cols=37 Identities=16% Similarity=0.010 Sum_probs=24.7
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 180 (493)
.-+++.|++|+|||...+-.+..... .+..++++..-
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E 111 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAE 111 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECC
Confidence 78999999999999875443333221 23467777643
No 193
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=88.47 E-value=0.99 Score=45.69 Aligned_cols=125 Identities=13% Similarity=0.131 Sum_probs=82.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHH--HcCCCcEEEEeCc-c----------ccCCCC
Q 011104 350 MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEF--KDGLTQVLISTDV-L----------ARGFDQ 416 (493)
Q Consensus 350 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f--~~g~~~vLv~T~~-~----------~~Gldi 416 (493)
.+.+||.++++.-+......|...|+.+..++|+++..++..++..+ ..+...||++|.- + ...++.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~ 163 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEA 163 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHT
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhc
Confidence 57899999999999999999999999999999999999999988888 5788999999963 1 122234
Q ss_pred CCCCEEEEccCC----CCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHhCCC
Q 011104 417 QQVNLIVNYDPP----VKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIK 481 (493)
Q Consensus 417 ~~v~~Vi~~~~p----~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~ 481 (493)
..+.+||.-..- |. .+...-..+++...+. .++.-+++++.--.......+.+.++..
T Consensus 164 ~~i~~iViDEAH~is~~g------~dfr~~~~~l~~l~~~-~~~~~ii~lSAT~~~~v~~~i~~~l~~~ 225 (591)
T 2v1x_A 164 RRFTRIAVDEVHCCSQWG------HDFRPDYKALGILKRQ-FPNASLIGLTATATNHVLTDAQKILCIE 225 (591)
T ss_dssp TCEEEEEEETGGGGSTTC------TTCCGGGGGGGHHHHH-CTTSEEEEEESSCCHHHHHHHHHHTTCC
T ss_pred cCCcEEEEECcccccccc------cccHHHHHHHHHHHHh-CCCCcEEEEecCCCHHHHHHHHHHhCCC
Confidence 456666642111 11 0111112233333222 1234455555555566667777777654
No 194
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.44 E-value=1.7 Score=44.11 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=17.5
Q ss_pred hcCCCCccEEEeccCCCchhHHh
Q 011104 135 ILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 135 il~~~~~~viv~a~TGsGKT~~~ 157 (493)
+..| ..+++.||+|+|||+.+
T Consensus 57 i~~g--~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 57 ANQK--RHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHTT--CCEEEECCTTSSHHHHH
T ss_pred ccCC--CEEEEEeCCCCCHHHHH
Confidence 3456 89999999999999864
No 195
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=88.15 E-value=2 Score=42.11 Aligned_cols=64 Identities=20% Similarity=0.203 Sum_probs=48.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCccccCCCCCCCCEEEEc
Q 011104 350 MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLIVNY 425 (493)
Q Consensus 350 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gldi~~v~~Vi~~ 425 (493)
+.+++|.|.|...++++.+.|.+.++.+......- .+..| .|.|+...+..|+-+|...++|.-
T Consensus 382 ~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~~----------~~~~g--~v~i~~g~L~~GF~~p~~klaVIT 445 (483)
T 3hjh_A 382 DGPVVFSVESEGRREALGELLARIKIAPQRIMRLD----------EASDR--GRYLMIGAAEHGFVDTVRNLALIC 445 (483)
T ss_dssp CSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCGG----------GCCTT--CEEEEESCCCSCEEETTTTEEEEE
T ss_pred CCeEEEEeCChHHHHHHHHHHHHcCCCceecCchh----------hcCCC--cEEEEEcccccCcccCCCCEEEEE
Confidence 46899999999999999999999888765543211 11223 577777888999999998888764
No 196
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=88.10 E-value=0.92 Score=44.32 Aligned_cols=59 Identities=12% Similarity=0.226 Sum_probs=31.7
Q ss_pred CCeeEEEEecchhhhcccCCHHHHHHHHHHhh---hcCCCeeEEEEeeecChhHHHHHHHHh
Q 011104 246 SRLKILVYDEADHMLDEAGFRDDSLRIMKDIE---RSSGHCQVLLFSATFNETVKNFVTRIV 304 (493)
Q Consensus 246 ~~~~~iVlDEah~l~~~~~~~~~~~~i~~~~~---~~~~~~q~v~~SAT~~~~~~~~~~~~~ 304 (493)
..++++++|-+-++-........+..+...+. ...+..-++.++||...+....++.+.
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~ 435 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFH 435 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHH
Confidence 34678999988664322122223333333322 222334577889987766555555554
No 197
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=87.88 E-value=5.3 Score=37.58 Aligned_cols=96 Identities=10% Similarity=0.215 Sum_probs=64.8
Q ss_pred EEeCCChHHHHHHHHHHHHHhc---ccCCcEEEEcCChhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHH
Q 011104 326 KVYCPDELAKVMVIRDRIFELG---EKMGQTIIFVRTKNSASALHKALKDF-----GYEVTTIMGATIQEERDKIVKEFK 397 (493)
Q Consensus 326 ~~~~~~~~~~~~~l~~~l~~~~---~~~~~~lVf~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f~ 397 (493)
.+..+....|.....-.+.... ....++||.|+++.-+..+++.+... ++.+..++|+.+....... +.
T Consensus 49 lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~ 125 (391)
T 1xti_A 49 LCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LK 125 (391)
T ss_dssp EEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HH
T ss_pred EEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---Hh
Confidence 4445555555543322233222 22458999999999999998888764 7899999999987665544 44
Q ss_pred cCCCcEEEEeCc-c-----ccCCCCCCCCEEEE
Q 011104 398 DGLTQVLISTDV-L-----ARGFDQQQVNLIVN 424 (493)
Q Consensus 398 ~g~~~vLv~T~~-~-----~~Gldi~~v~~Vi~ 424 (493)
.+...|+|+|.- + ...+++.++++||.
T Consensus 126 ~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 126 KNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp HSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred cCCCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 577789999942 2 23466778888875
No 198
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=87.56 E-value=0.33 Score=38.82 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=14.8
Q ss_pred ccEEEeccCCCchhHH
Q 011104 141 RNLIAQARNGSGKTTC 156 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~ 156 (493)
.++++.|++|+|||..
T Consensus 28 ~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 28 SPVFLTGEAGSPFETV 43 (143)
T ss_dssp SCEEEEEETTCCHHHH
T ss_pred CcEEEECCCCccHHHH
Confidence 7899999999999975
No 199
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=87.42 E-value=5.6 Score=34.05 Aligned_cols=145 Identities=13% Similarity=0.113 Sum_probs=74.8
Q ss_pred EEeCCChHHHHHHH-HHHHHHhc--ccCCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHc
Q 011104 326 KVYCPDELAKVMVI-RDRIFELG--EKMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKD 398 (493)
Q Consensus 326 ~~~~~~~~~~~~~l-~~~l~~~~--~~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~ 398 (493)
.+..+....|.... .-.+.... ....++||.++++..+..+++.+... ++.+..++|+.+...+...+ .
T Consensus 55 lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~- 130 (224)
T 1qde_A 55 LAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL---R- 130 (224)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C---T-
T ss_pred EEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC---C-
Confidence 44555555555442 22222222 23568999999999999988877653 77899999987655443322 2
Q ss_pred CCCcEEEEeCcc------ccCCCCCCCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHH
Q 011104 399 GLTQVLISTDVL------ARGFDQQQVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIME 472 (493)
Q Consensus 399 g~~~vLv~T~~~------~~Gldi~~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~ 472 (493)
...|+|+|.-. ...+++..+++||.-..-.. ....|...+.+..+.-..+.-+.+++.--.....+
T Consensus 131 -~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~-------~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~ 202 (224)
T 1qde_A 131 -DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM-------LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLE 202 (224)
T ss_dssp -TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH-------HHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHH
T ss_pred -CCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHH-------hhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHH
Confidence 27899999521 34566777888774221100 00012111222221112334455555544555666
Q ss_pred HHHHHhCCCc
Q 011104 473 KIERYFDIKV 482 (493)
Q Consensus 473 ~i~~~~~~~~ 482 (493)
.+.++++.++
T Consensus 203 ~~~~~~~~p~ 212 (224)
T 1qde_A 203 VTTKFMRNPV 212 (224)
T ss_dssp HHHHHCSSCE
T ss_pred HHHHHCCCCE
Confidence 6777776543
No 200
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.31 E-value=0.54 Score=44.15 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=14.7
Q ss_pred ccEEEeccCCCchhHH
Q 011104 141 RNLIAQARNGSGKTTC 156 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~ 156 (493)
..+++.||||||||+.
T Consensus 124 g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTT 139 (356)
T ss_dssp EEEEEECSTTSCHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6899999999999985
No 201
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=87.26 E-value=4.4 Score=35.14 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=50.7
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCc-c----cc--CCCCC
Q 011104 349 KMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-L----AR--GFDQQ 417 (493)
Q Consensus 349 ~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~----~~--Gldi~ 417 (493)
.+.++||.++++..+..+++.++.. ++.+..++|+.+.......+ +...|+|+|.- + .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3568999999999999998888764 47899999987655443332 35789999942 2 12 36677
Q ss_pred CCCEEEE
Q 011104 418 QVNLIVN 424 (493)
Q Consensus 418 ~v~~Vi~ 424 (493)
++++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 8888875
No 202
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.15 E-value=2.1 Score=44.91 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.8
Q ss_pred CccEEEeccCCCchhHHh
Q 011104 140 YRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 140 ~~~viv~a~TGsGKT~~~ 157 (493)
..++++.|++|+|||...
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 378999999999999864
No 203
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=87.11 E-value=4.6 Score=34.89 Aligned_cols=70 Identities=14% Similarity=0.266 Sum_probs=53.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCc-c-----ccCCCCCC
Q 011104 350 MGQTIIFVRTKNSASALHKALKDF-----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-L-----ARGFDQQQ 418 (493)
Q Consensus 350 ~~~~lVf~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~-----~~Gldi~~ 418 (493)
..++||.+++++.+..+++.++.. ++.+..++|+.+...+...+ ....|+|+|.- + ...+++.+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 568999999999999999888764 67899999999876655443 24789999953 1 23466777
Q ss_pred CCEEEE
Q 011104 419 VNLIVN 424 (493)
Q Consensus 419 v~~Vi~ 424 (493)
+++||.
T Consensus 167 ~~~lVi 172 (230)
T 2oxc_A 167 IRLFIL 172 (230)
T ss_dssp CCEEEE
T ss_pred CCEEEe
Confidence 888775
No 204
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=86.82 E-value=4 Score=35.15 Aligned_cols=72 Identities=11% Similarity=0.192 Sum_probs=49.6
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhC---CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCc------cccCCCCCCC
Q 011104 349 KMGQTIIFVRTKNSASALHKALKDF---GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV------LARGFDQQQV 419 (493)
Q Consensus 349 ~~~~~lVf~~s~~~~~~l~~~L~~~---~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~------~~~Gldi~~v 419 (493)
.+.++||.+++++.+..+++.+... ++.+..++|+.+...+... +.. ...|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---ISK-GVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HHS-CCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hcC-CCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4678999999999999999988874 7789999998775544333 233 4789999942 2235678888
Q ss_pred CEEEE
Q 011104 420 NLIVN 424 (493)
Q Consensus 420 ~~Vi~ 424 (493)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 88885
No 205
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.76 E-value=2.7 Score=43.98 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=14.4
Q ss_pred cEEEeccCCCchhHHh
Q 011104 142 NLIAQARNGSGKTTCF 157 (493)
Q Consensus 142 ~viv~a~TGsGKT~~~ 157 (493)
.+++.||||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999864
No 206
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=86.56 E-value=0.68 Score=42.36 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=51.9
Q ss_pred cEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCC
Q 011104 142 NLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPP 221 (493)
Q Consensus 142 ~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (493)
-+++.+|+|+|||...+-.+.+... ...+.+++++..-..+... .+++++...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~---ra~~lGvd~----------------------- 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA---YLRSMGVDP----------------------- 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH---HHHHTTCCG-----------------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH---HHHHhCCCH-----------------------
Confidence 5899999999999875554443332 1125678888765554322 244443211
Q ss_pred CCCcEEEeCchHHHHH----HHc-CccCCCCeeEEEEecchhhh
Q 011104 222 VTAQVVIGTPGTIKKW----MSA-KKLGFSRLKILVYDEADHML 260 (493)
Q Consensus 222 ~~~~Ilv~Tp~~l~~~----l~~-~~~~~~~~~~iVlDEah~l~ 260 (493)
.++++..|..+.+. +.. ..+.-..+++||||-+..+.
T Consensus 83 --d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 --ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp --GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred --HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 13555555443332 211 01223468999999999876
No 207
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=86.27 E-value=0.83 Score=48.64 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=18.3
Q ss_pred hhhcCCCCccEEEeccCCCchhHHh
Q 011104 133 PMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 133 ~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
..+..+..+++++.||+|+|||...
T Consensus 184 ~~l~~~~~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 184 QILLRRTKNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp HHHHCSSCCCCEEEECTTSCHHHHH
T ss_pred HHHhcCCCCceEEEcCCCCCHHHHH
Confidence 3333443368999999999999864
No 208
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=86.23 E-value=0.47 Score=44.45 Aligned_cols=36 Identities=22% Similarity=0.123 Sum_probs=24.7
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 179 (493)
+-+++.|++|+|||...+..+..... .+..++++.-
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~ 97 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDA 97 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEES
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEEC
Confidence 78999999999999875544433321 2446777764
No 209
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=85.75 E-value=0.58 Score=43.82 Aligned_cols=39 Identities=21% Similarity=0.127 Sum_probs=25.3
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHH
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRE 182 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 182 (493)
.-+++.||+|+|||...+..+. .+.. .+..++++.....
T Consensus 62 ~i~~I~GppGsGKSTLal~la~-~~~~--~gg~VlyId~E~s 100 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIA-EAQK--MGGVAAFIDAEHA 100 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-HHHH--TTCCEEEEESSCC
T ss_pred cEEEEECCCCCCHHHHHHHHHH-HHHh--cCCeEEEEecccc
Confidence 7899999999999986443332 2211 3446777765433
No 210
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=85.40 E-value=0.7 Score=51.08 Aligned_cols=39 Identities=18% Similarity=0.276 Sum_probs=29.0
Q ss_pred EEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCH
Q 011104 143 LIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTR 181 (493)
Q Consensus 143 viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 181 (493)
-+|.|..|||||.+.+--+...+.....+.++|+|||..
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q 42 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQ 42 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCc
Confidence 367888999999986655555444444557899999976
No 211
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=85.26 E-value=1.9 Score=46.87 Aligned_cols=79 Identities=13% Similarity=0.265 Sum_probs=59.2
Q ss_pred HHhcccCCcEEEEcCChhhHHHHHHHHHhC----CC----cEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCc-cccCC
Q 011104 344 FELGEKMGQTIIFVRTKNSASALHKALKDF----GY----EVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-LARGF 414 (493)
Q Consensus 344 ~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~----~~----~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~~~Gl 414 (493)
......+.++||.++++..+..+++.++.. ++ .+..+||+.+...+....+.+.. ..|+|+|.- +..-+
T Consensus 93 ~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l 170 (1054)
T 1gku_B 93 LFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHY 170 (1054)
T ss_dssp HHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCS
T ss_pred HHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHH
Confidence 333345678999999999999988887643 56 89999999999888777777776 899999952 22222
Q ss_pred C-CCCCCEEEE
Q 011104 415 D-QQQVNLIVN 424 (493)
Q Consensus 415 d-i~~v~~Vi~ 424 (493)
. +.++++||.
T Consensus 171 ~~L~~l~~lVi 181 (1054)
T 1gku_B 171 RELGHFDFIFV 181 (1054)
T ss_dssp TTSCCCSEEEE
T ss_pred HHhccCCEEEE
Confidence 2 557788775
No 212
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=85.08 E-value=2.9 Score=37.95 Aligned_cols=17 Identities=35% Similarity=0.290 Sum_probs=14.6
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+.+.+.+++|+|||...
T Consensus 99 ~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp EEEEEECCTTTTHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 77888899999999753
No 213
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=84.94 E-value=12 Score=35.81 Aligned_cols=42 Identities=26% Similarity=0.172 Sum_probs=25.1
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEc--CCHHHHH
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAI 185 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--Pt~~La~ 185 (493)
+.+.+.++.|+|||+....-+. .+.. .+.+++++. +.+..+.
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~-~l~~--~g~~Vllvd~D~~r~aa~ 142 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLAL-YYKG--KGRRPLLVAADTQRPAAR 142 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH-HHHT--TTCCEEEEECCSSCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHH--cCCeEEEeeccccCchhH
Confidence 6788889999999986433222 2222 244566655 4455443
No 214
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=84.84 E-value=2.8 Score=44.13 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=15.3
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+.+++.||+|+|||+.+
T Consensus 239 ~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEECSCTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 78999999999999853
No 215
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=84.50 E-value=0.36 Score=42.61 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=29.3
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKM 194 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 194 (493)
.-+++.|++|+|||...+-.+.+.... .+..++++.-. +-..++.+.+..+
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~--~~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESS-SCHHHHHHHHHTT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCCceeeccc-CCHHHHHHHHHHc
Confidence 789999999999997654433332211 23346666532 2334445444433
No 216
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.37 E-value=0.93 Score=43.54 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=14.6
Q ss_pred ccEEEeccCCCchhHH
Q 011104 141 RNLIAQARNGSGKTTC 156 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~ 156 (493)
.-+++.||||||||+.
T Consensus 168 gii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTT 183 (418)
T ss_dssp EEEEEECSTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6789999999999985
No 217
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=83.76 E-value=1.6 Score=48.30 Aligned_cols=54 Identities=19% Similarity=0.096 Sum_probs=41.5
Q ss_pred cEEEeccCCCchhHHhHHHHHhccCCC---------CCCCeEEEEcCCHHHHHHHHHHHHHHh
Q 011104 142 NLIAQARNGSGKTTCFVLGMLSRVDPN---------LKAPQALCICPTRELAIQNLEVLRKMG 195 (493)
Q Consensus 142 ~viv~a~TGsGKT~~~~~~~l~~l~~~---------~~~~~~lil~Pt~~La~q~~~~~~~~~ 195 (493)
..+|.|..|||||.+..--++..+... ....++|+|+=|+..|..+.+++....
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 459999999999998666666665421 234579999999999999998877643
No 218
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=83.68 E-value=1.5 Score=43.86 Aligned_cols=17 Identities=29% Similarity=0.239 Sum_probs=15.4
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.||+|+|||+.+
T Consensus 109 ~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CEEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 78999999999999863
No 219
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=83.54 E-value=0.68 Score=38.58 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=15.3
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+.+++.|++|+|||...
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 68999999999999864
No 220
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=83.45 E-value=5.4 Score=38.66 Aligned_cols=93 Identities=18% Similarity=0.244 Sum_probs=62.6
Q ss_pred EeCCChHHHHHHHHHHHHHhc-ccCCcEEEEcCChhhHHHHHHHHHhC-CC---cEEEecCCCCHHHHHHHHHHHHcCCC
Q 011104 327 VYCPDELAKVMVIRDRIFELG-EKMGQTIIFVRTKNSASALHKALKDF-GY---EVTTIMGATIQEERDKIVKEFKDGLT 401 (493)
Q Consensus 327 ~~~~~~~~~~~~l~~~l~~~~-~~~~~~lVf~~s~~~~~~l~~~L~~~-~~---~~~~l~~~~~~~~r~~~~~~f~~g~~ 401 (493)
+..+....|.......+.... ....++||.|+++.-+...++.+.+. +. .+..+||+.....+...+. ..
T Consensus 28 l~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~ 102 (494)
T 1wp9_A 28 IVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RA 102 (494)
T ss_dssp EECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HC
T ss_pred EEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CC
Confidence 344444455444333222221 34689999999999999998888765 55 8999999998877655443 35
Q ss_pred cEEEEeC-ccc-----cCCCCCCCCEEEE
Q 011104 402 QVLISTD-VLA-----RGFDQQQVNLIVN 424 (493)
Q Consensus 402 ~vLv~T~-~~~-----~Gldi~~v~~Vi~ 424 (493)
.|+|+|. .+. ..+...++++||.
T Consensus 103 ~ivv~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 103 KVIVATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp SEEEECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred CEEEecHHHHHHHHhcCCcchhhceEEEE
Confidence 7999994 222 2456777888775
No 221
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=83.36 E-value=0.92 Score=44.90 Aligned_cols=19 Identities=32% Similarity=0.244 Sum_probs=16.4
Q ss_pred cCCCCccEEEeccCCCchhHH
Q 011104 136 LTPPYRNLIAQARNGSGKTTC 156 (493)
Q Consensus 136 l~~~~~~viv~a~TGsGKT~~ 156 (493)
-.| ..+++.||||||||+.
T Consensus 258 ~~g--~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 258 EHK--FSAIVVGETASGKTTT 276 (511)
T ss_dssp HTT--CCEEEEESTTSSHHHH
T ss_pred hCC--CEEEEECCCCCCHHHH
Confidence 345 7899999999999985
No 222
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=83.25 E-value=1.3 Score=36.53 Aligned_cols=95 Identities=16% Similarity=0.123 Sum_probs=57.4
Q ss_pred EEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcc--cccCCCC
Q 011104 144 IAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPP 221 (493)
Q Consensus 144 iv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 221 (493)
++..+....|-. ++.-++.. ....++||.|+++..+..++..+... +..+..+++..+.... .......
T Consensus 12 ~~~~~~~~~K~~-~L~~ll~~----~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 12 YVLCEHRKDKYQ-ALCNIYGS----ITIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp EEECSSHHHHHH-HHHHHHTT----SCCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred EEEcCChHhHHH-HHHHHHHh----CCCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 333333333543 34444443 24568999999999999988887764 4556666665443221 1111123
Q ss_pred CCCcEEEeCchHHHHHHHcCccCCCCeeEEEE
Q 011104 222 VTAQVVIGTPGTIKKWMSAKKLGFSRLKILVY 253 (493)
Q Consensus 222 ~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVl 253 (493)
+...|+|+|. +-...+++..+++||.
T Consensus 83 g~~~vLvaT~------~~~~Gid~~~~~~Vi~ 108 (175)
T 2rb4_A 83 GKEKVLITTN------VCARGIDVKQVTIVVN 108 (175)
T ss_dssp TSCSEEEECC------SCCTTTCCTTEEEEEE
T ss_pred CCCeEEEEec------chhcCCCcccCCEEEE
Confidence 4578999994 2334667888998885
No 223
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=82.86 E-value=0.63 Score=38.62 Aligned_cols=17 Identities=35% Similarity=0.390 Sum_probs=15.3
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.|++|+|||...
T Consensus 44 ~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIV 60 (187)
T ss_dssp CEEEEESCGGGCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 78999999999999864
No 224
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=82.78 E-value=4.8 Score=42.78 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=14.4
Q ss_pred cEEEeccCCCchhHHh
Q 011104 142 NLIAQARNGSGKTTCF 157 (493)
Q Consensus 142 ~viv~a~TGsGKT~~~ 157 (493)
.+++.||||+|||..+
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6999999999999864
No 225
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=82.67 E-value=0.81 Score=44.42 Aligned_cols=42 Identities=14% Similarity=0.273 Sum_probs=29.6
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHH
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAI 185 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~ 185 (493)
.++++.|+||||||... ..++..+.. .+..++|+=|..++..
T Consensus 54 ~h~~i~G~tGsGKs~~~-~~li~~~~~--~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLL-RELAYTGLL--RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GCEEEEECTTSSHHHHH-HHHHHHHHH--TTCEEEEEEETTHHHH
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHH--CCCcEEEEeCCCchhH
Confidence 78999999999999975 223322221 3457888889888754
No 226
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=82.16 E-value=4.5 Score=42.26 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=15.2
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+.+++.||+|+|||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999853
No 227
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=82.01 E-value=11 Score=32.92 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=51.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCc-c-----ccCCCCCCC
Q 011104 350 MGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-L-----ARGFDQQQV 419 (493)
Q Consensus 350 ~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~-----~~Gldi~~v 419 (493)
..++||.+++++.+..+++.+... ++.+..++|+.+.......+ .....|+|+|.- + ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 468999999999999988877653 57888899988765543332 345789999942 2 234577788
Q ss_pred CEEEE
Q 011104 420 NLIVN 424 (493)
Q Consensus 420 ~~Vi~ 424 (493)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88774
No 228
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=81.96 E-value=1.1 Score=42.06 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=19.4
Q ss_pred cCCCCccEEEeccCCCchhHHhHHHHHhcc
Q 011104 136 LTPPYRNLIAQARNGSGKTTCFVLGMLSRV 165 (493)
Q Consensus 136 l~~~~~~viv~a~TGsGKT~~~~~~~l~~l 165 (493)
..| ..+++.|+||||||+. +-++..+
T Consensus 173 ~~G--~~i~ivG~sGsGKSTl--l~~l~~~ 198 (361)
T 2gza_A 173 QLE--RVIVVAGETGSGKTTL--MKALMQE 198 (361)
T ss_dssp HTT--CCEEEEESSSSCHHHH--HHHHHTT
T ss_pred hcC--CEEEEECCCCCCHHHH--HHHHHhc
Confidence 356 8999999999999984 3344443
No 229
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=81.55 E-value=3.6 Score=39.87 Aligned_cols=69 Identities=12% Similarity=0.057 Sum_probs=45.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeE
Q 011104 171 APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKI 250 (493)
Q Consensus 171 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 250 (493)
+.++||+||++.-+..+++.++.. +..+..+++. ...........+..+|+|+|. +-...+++. +++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~--~R~~~~~~F~~g~~~vLVaT~------v~e~GiDip-v~~ 243 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRK--TFEREYPTIKQKKPDFILATD------IAEMGANLC-VER 243 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSS--SCC--------CCCSEEEESS------STTCCTTCC-CSE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecch--hHHHHHhhhcCCCceEEEECC------hhheeeccC-ceE
Confidence 458999999999999999888876 4556666662 233333344456789999995 334456777 877
Q ss_pred EE
Q 011104 251 LV 252 (493)
Q Consensus 251 iV 252 (493)
||
T Consensus 244 VI 245 (440)
T 1yks_A 244 VL 245 (440)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 230
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=81.26 E-value=12 Score=33.14 Aligned_cols=72 Identities=18% Similarity=0.281 Sum_probs=53.2
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeC-----cc--ccCCCCC
Q 011104 349 KMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD-----VL--ARGFDQQ 417 (493)
Q Consensus 349 ~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~--~~Gldi~ 417 (493)
.+.++||.++++.-+..+++.++.. +..+..++|+......... +..+ ..|+|+|. .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 4678999999999999998888763 6778889998876554433 3344 78999993 12 2357788
Q ss_pred CCCEEEE
Q 011104 418 QVNLIVN 424 (493)
Q Consensus 418 ~v~~Vi~ 424 (493)
++++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8888875
No 231
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=80.95 E-value=0.51 Score=42.57 Aligned_cols=54 Identities=20% Similarity=0.423 Sum_probs=26.8
Q ss_pred CCCcccCCCCHHHHHHHHhhC--CCCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 99 ATTFEDLNLSPELLKGLYVEM--KFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~--g~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
..+|++++-...+.+.+.... .+..+.-++...+ -. . +.+++.||+|+|||+.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l--~~-~--~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGL--VT-P--AGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTC--CC-C--SEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC--CC-C--CeEEEECCCCCcHHHHH
Confidence 457888887777777765411 1111211111111 11 1 45999999999999853
No 232
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=80.64 E-value=1.2 Score=36.40 Aligned_cols=90 Identities=11% Similarity=0.165 Sum_probs=55.6
Q ss_pred CchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcc--cccCCCCCCCcEEE
Q 011104 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVI 228 (493)
Q Consensus 151 sGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv 228 (493)
..|.. .+.-++... .+.++||.|+++..+..+++.+... ++.+..+++..+.... ...........|+|
T Consensus 20 ~~K~~-~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv 90 (163)
T 2hjv_A 20 ENKFS-LLKDVLMTE----NPDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLV 90 (163)
T ss_dssp GGHHH-HHHHHHHHH----CCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEE
T ss_pred HHHHH-HHHHHHHhc----CCCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 45544 344444432 3458999999999999998888775 4555566665433221 11111233578999
Q ss_pred eCchHHHHHHHcCccCCCCeeEEEEec
Q 011104 229 GTPGTIKKWMSAKKLGFSRLKILVYDE 255 (493)
Q Consensus 229 ~Tp~~l~~~l~~~~~~~~~~~~iVlDE 255 (493)
+|. +-...+++.++++||.-.
T Consensus 91 ~T~------~~~~Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 91 ATD------VAARGIDIENISLVINYD 111 (163)
T ss_dssp ECG------GGTTTCCCSCCSEEEESS
T ss_pred ECC------hhhcCCchhcCCEEEEeC
Confidence 993 233466788888887643
No 233
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=80.00 E-value=0.92 Score=37.68 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=15.9
Q ss_pred ccEEEeccCCCchhHHhH
Q 011104 141 RNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~ 158 (493)
+.+++.|++|||||...-
T Consensus 12 ~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHH
Confidence 789999999999998643
No 234
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=79.98 E-value=3.6 Score=39.66 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=15.3
Q ss_pred ccEEEeccCCCchhHHhH
Q 011104 141 RNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~ 158 (493)
..+++.|++|+|||....
T Consensus 100 ~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCEEEECCSSSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 579999999999998643
No 235
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=79.89 E-value=0.88 Score=37.90 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=15.1
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+-+++.||+|||||...
T Consensus 6 ~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 78999999999999853
No 236
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=79.62 E-value=10 Score=27.59 Aligned_cols=47 Identities=15% Similarity=0.296 Sum_probs=38.7
Q ss_pred EEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcC
Q 011104 353 TIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDG 399 (493)
Q Consensus 353 ~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g 399 (493)
.+||.+.-+-...+...++..|+.+..++++.....|..-++.|...
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHc
Confidence 46777777777788888888999999999999888888888888654
No 237
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=79.57 E-value=1.2 Score=41.20 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=19.6
Q ss_pred CCCCccEEEeccCCCchhHHhHHHHHhccC
Q 011104 137 TPPYRNLIAQARNGSGKTTCFVLGMLSRVD 166 (493)
Q Consensus 137 ~~~~~~viv~a~TGsGKT~~~~~~~l~~l~ 166 (493)
.| ..+.+.|+||||||+. +-++..+.
T Consensus 170 ~g--~~v~i~G~~GsGKTTl--l~~l~g~~ 195 (330)
T 2pt7_A 170 IG--KNVIVCGGTGSGKTTY--IKSIMEFI 195 (330)
T ss_dssp HT--CCEEEEESTTSCHHHH--HHHGGGGS
T ss_pred CC--CEEEEECCCCCCHHHH--HHHHhCCC
Confidence 46 8999999999999984 44454443
No 238
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=79.12 E-value=17 Score=34.25 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=61.3
Q ss_pred EEeCCChHHHHHHHHHHHHHhcc---cCCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHc
Q 011104 326 KVYCPDELAKVMVIRDRIFELGE---KMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKD 398 (493)
Q Consensus 326 ~~~~~~~~~~~~~l~~~l~~~~~---~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~ 398 (493)
.+..+....|.......+..... ...++||.++++..+..+++.+... ++.+..++|+......... ..
T Consensus 62 li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~ 137 (400)
T 1s2m_A 62 LARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LN 137 (400)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TT
T ss_pred EEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hc
Confidence 34455555555433222222222 3568999999999999888877654 7789999999876543322 24
Q ss_pred CCCcEEEEeCc-----c-ccCCCCCCCCEEEE
Q 011104 399 GLTQVLISTDV-----L-ARGFDQQQVNLIVN 424 (493)
Q Consensus 399 g~~~vLv~T~~-----~-~~Gldi~~v~~Vi~ 424 (493)
+...|+|+|.- + ....++.++++||.
T Consensus 138 ~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIi 169 (400)
T 1s2m_A 138 ETVHILVGTPGRVLDLASRKVADLSDCSLFIM 169 (400)
T ss_dssp SCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred CCCCEEEEchHHHHHHHHhCCcccccCCEEEE
Confidence 56789999942 2 23456777888775
No 239
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=79.09 E-value=5.9 Score=38.92 Aligned_cols=43 Identities=26% Similarity=0.186 Sum_probs=25.6
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEc--CCHHHHHH
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAIQ 186 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--Pt~~La~q 186 (493)
+.++++|++|+|||+.+.--+ ..+.. .+.+++++. |.+..+..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA-~~l~~--~G~kVllVd~D~~r~aa~~ 146 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLA-YYYQR--KGWKTCLICADTFRAGAFD 146 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHH-HHHHH--TTCCEEEEEECCSSSHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHh--CCCeEEEEeccccchhHHH
Confidence 578899999999998743322 22221 244566665 33444433
No 240
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=79.01 E-value=3.1 Score=36.98 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=15.3
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.|++|+|||..+
T Consensus 30 ~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 78999999999999863
No 241
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=78.98 E-value=3.4 Score=30.75 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=33.6
Q ss_pred cccCCcEEEEcCChhhHHHHHHHHHhCCCc-EEEecCCCC
Q 011104 347 GEKMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATI 385 (493)
Q Consensus 347 ~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~ 385 (493)
.....+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 49 l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 49 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp SCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 445678999999998999999999999994 889999864
No 242
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=78.63 E-value=1.7 Score=37.12 Aligned_cols=31 Identities=26% Similarity=0.094 Sum_probs=24.1
Q ss_pred chHHHhhhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 125 SKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 125 ~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
+.-|..++..+-.| .-+.+.||.|||||+.+
T Consensus 9 ~~g~~~~l~~i~~G--e~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAIDTN--TIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHHHHC--SEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHHhccCC--CEEEEECCCCCCHHHHH
Confidence 34456677777777 88999999999999853
No 243
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=78.52 E-value=2.4 Score=39.00 Aligned_cols=54 Identities=19% Similarity=0.195 Sum_probs=32.5
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCC---------CCC----CeEEEEcCCHHH-HHHHHHHHHHH
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPN---------LKA----PQALCICPTREL-AIQNLEVLRKM 194 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~---------~~~----~~~lil~Pt~~L-a~q~~~~~~~~ 194 (493)
.-+++.|++|+|||...+-.+.+..... ..+ .+++++.-...+ ..++.+.+..+
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 7899999999999987655444422211 112 577887744332 34555555544
No 244
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=78.10 E-value=11 Score=34.09 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=15.1
Q ss_pred ccEEEeccCCCchhHHhH
Q 011104 141 RNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~ 158 (493)
+-+.+.+++|+|||....
T Consensus 99 ~vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEEECSSCSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 678889999999998643
No 245
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=77.94 E-value=25 Score=32.77 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=63.1
Q ss_pred EEEeCCChHHHHHHHHHHHHHhc---ccCCcEEEEcCChhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHH
Q 011104 325 YKVYCPDELAKVMVIRDRIFELG---EKMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFK 397 (493)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~ 397 (493)
..+..+....|.....-.+.... ....++||.++++.-+..+++.+.. .++.+..++|+.........+.
T Consensus 61 ~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--- 137 (394)
T 1fuu_A 61 VLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR--- 137 (394)
T ss_dssp EEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH---
T ss_pred EEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC---
Confidence 34556666666654322222222 2356899999999999988887765 4788999999998766555443
Q ss_pred cCCCcEEEEeCc-c-----ccCCCCCCCCEEEE
Q 011104 398 DGLTQVLISTDV-L-----ARGFDQQQVNLIVN 424 (493)
Q Consensus 398 ~g~~~vLv~T~~-~-----~~Gldi~~v~~Vi~ 424 (493)
...|+|+|.- + ...+.+.++++||.
T Consensus 138 --~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 138 --DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp --HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred --CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 3579999932 1 23455667788774
No 246
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=77.89 E-value=1.1 Score=42.02 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=21.6
Q ss_pred hhhhhcCCCCccEEEeccCCCchhHH
Q 011104 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (493)
Q Consensus 131 ~i~~il~~~~~~viv~a~TGsGKT~~ 156 (493)
.+..++.|.+-.++.-|+||||||..
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 45667888666799999999999986
No 247
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=77.83 E-value=2.1 Score=32.03 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=34.1
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCC
Q 011104 348 EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATI 385 (493)
Q Consensus 348 ~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~ 385 (493)
.+..+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 44678999999999999999999999999999999874
No 248
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=77.82 E-value=22 Score=33.52 Aligned_cols=95 Identities=15% Similarity=0.187 Sum_probs=62.1
Q ss_pred EEeCCChHHHHHHHHHHHHHhc---ccCCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHc
Q 011104 326 KVYCPDELAKVMVIRDRIFELG---EKMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKD 398 (493)
Q Consensus 326 ~~~~~~~~~~~~~l~~~l~~~~---~~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~ 398 (493)
.+..+....|.......+.... ....++||.++++.-+..+++.+... ++.+..++|+.........+. .
T Consensus 78 lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~ 154 (410)
T 2j0s_A 78 IAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD---Y 154 (410)
T ss_dssp EEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH---H
T ss_pred EEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh---c
Confidence 3445555555544333233332 24678999999999999998888654 578899999988766544432 2
Q ss_pred CCCcEEEEeC-----ccc-cCCCCCCCCEEEE
Q 011104 399 GLTQVLISTD-----VLA-RGFDQQQVNLIVN 424 (493)
Q Consensus 399 g~~~vLv~T~-----~~~-~Gldi~~v~~Vi~ 424 (493)
...|+|+|. .+. ..++...+++||.
T Consensus 155 -~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 155 -GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp -CCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred -CCCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 357999994 222 3466677888774
No 249
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=77.40 E-value=0.89 Score=43.01 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=14.9
Q ss_pred ccEEEeccCCCchhHH
Q 011104 141 RNLIAQARNGSGKTTC 156 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~ 156 (493)
..+++.||||||||+.
T Consensus 137 ~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTT 152 (372)
T ss_dssp EEEEEECSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 7899999999999985
No 250
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=77.38 E-value=1.2 Score=41.00 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=21.2
Q ss_pred hhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 131 SLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 131 ~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
.+..++.|.+-.++.-|+||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 345567785567899999999999873
No 251
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=77.15 E-value=1.4 Score=39.28 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=16.4
Q ss_pred cCCCCccEEEeccCCCchhHH
Q 011104 136 LTPPYRNLIAQARNGSGKTTC 156 (493)
Q Consensus 136 l~~~~~~viv~a~TGsGKT~~ 156 (493)
..| .-+.+.||||||||+.
T Consensus 23 ~~g--~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 23 RKM--GLILVTGPTGSGKSTT 41 (261)
T ss_dssp CSS--EEEEEECSTTCSHHHH
T ss_pred CCC--CEEEEECCCCccHHHH
Confidence 345 7899999999999985
No 252
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=77.10 E-value=1.4 Score=41.03 Aligned_cols=27 Identities=26% Similarity=0.217 Sum_probs=22.1
Q ss_pred hhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 131 SLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 131 ~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
.+..++.|.+-.++..|+||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 566778886567899999999999874
No 253
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=77.03 E-value=1.4 Score=41.02 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=22.3
Q ss_pred hhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 131 SLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 131 ~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
.+..++.|.+-.++..|+||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 567778886567889999999999874
No 254
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=76.95 E-value=2.6 Score=41.54 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=15.9
Q ss_pred ccEEEeccCCCchhHHhH
Q 011104 141 RNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~ 158 (493)
.++++.|.||||||.+.-
T Consensus 168 pHlLIaG~TGSGKSt~L~ 185 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVN 185 (512)
T ss_dssp CSEEEECCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 689999999999998743
No 255
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=76.93 E-value=26 Score=32.26 Aligned_cols=94 Identities=14% Similarity=0.152 Sum_probs=61.8
Q ss_pred EEeCCChHHHHHHHHHHHHHhcc--cCCcEEEEcCChhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcC
Q 011104 326 KVYCPDELAKVMVIRDRIFELGE--KMGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDG 399 (493)
Q Consensus 326 ~~~~~~~~~~~~~l~~~l~~~~~--~~~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g 399 (493)
.+..+....|.......+..... ...++||.++++.-+..+++.+.. .++.+..++|+.........+.
T Consensus 48 l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----- 122 (367)
T 1hv8_A 48 VAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK----- 122 (367)
T ss_dssp EEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----
T ss_pred EEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----
Confidence 34455555555443332333322 367899999999999998888876 3678999999987665544332
Q ss_pred CCcEEEEeCc-c-----ccCCCCCCCCEEEE
Q 011104 400 LTQVLISTDV-L-----ARGFDQQQVNLIVN 424 (493)
Q Consensus 400 ~~~vLv~T~~-~-----~~Gldi~~v~~Vi~ 424 (493)
...|+|+|.- + ...+++.++++||.
T Consensus 123 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 123 NANIVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp TCSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred CCCEEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 4689999942 1 12356777888775
No 256
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=76.91 E-value=5.7 Score=45.80 Aligned_cols=35 Identities=20% Similarity=0.097 Sum_probs=27.0
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEc
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 178 (493)
+++++.+++|+|||..++..+.+.+. .+.+++++.
T Consensus 1082 ~~vll~G~~GtGKT~la~~~~~ea~k---~Ge~~~Fit 1116 (2050)
T 3cmu_A 1082 RIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFID 1116 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEE
Confidence 89999999999999987666655553 355677775
No 257
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=76.90 E-value=1.2 Score=40.76 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=15.1
Q ss_pred ccEEEeccCCCchhHHhH
Q 011104 141 RNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~ 158 (493)
.-+++.||||||||..+.
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 568899999999998643
No 258
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=76.84 E-value=1.8 Score=41.29 Aligned_cols=40 Identities=25% Similarity=0.383 Sum_probs=28.3
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHH
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTREL 183 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L 183 (493)
.++++.|+||||||...-.-+.+.. ..+.+++|+=|..+.
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~---~~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREY---MQGSRVIIIDPEREY 75 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEEESSCCS
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHH---HCCCEEEEEeCCcCH
Confidence 7899999999999987544333332 245678888887663
No 259
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=76.81 E-value=29 Score=28.29 Aligned_cols=88 Identities=24% Similarity=0.263 Sum_probs=61.7
Q ss_pred EEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEE
Q 011104 326 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLI 405 (493)
Q Consensus 326 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv 405 (493)
+..+.+.......+.+.+.......+.+-|.|.+...+..+...|...|+.+..+.++.. ...-.|.|
T Consensus 37 ~~~~~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v 104 (174)
T 3dmn_A 37 VVVTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIV 104 (174)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEE
Confidence 334445445555555555442223577889999999999999999999999888776531 12246999
Q ss_pred EeCccccCCCCCCCCEEEEccCC
Q 011104 406 STDVLARGFDQQQVNLIVNYDPP 428 (493)
Q Consensus 406 ~T~~~~~Gldi~~v~~Vi~~~~p 428 (493)
.|--.+.|+.+ +.||.+++.
T Consensus 105 ~t~~~~KGlEf---~~V~~~~~~ 124 (174)
T 3dmn_A 105 VPSFLAKGLEF---DAVIVWNAN 124 (174)
T ss_dssp EEGGGCTTCCE---EEEEEETCB
T ss_pred EEccccCCcCC---CEEEEecCC
Confidence 99999999886 667777654
No 260
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=76.76 E-value=2 Score=34.99 Aligned_cols=88 Identities=14% Similarity=0.191 Sum_probs=54.5
Q ss_pred hhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcc--cccCCCCCCCcEEEeC
Q 011104 153 KTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGT 230 (493)
Q Consensus 153 KT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv~T 230 (493)
|.. .+..++... .+.++||.|+++..+..++..+... ++.+..+++....... .......+...|+|+|
T Consensus 17 K~~-~l~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 87 (165)
T 1fuk_A 17 KYE-CLTDLYDSI----SVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST 87 (165)
T ss_dssp HHH-HHHHHHHHT----TCSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE
T ss_pred HHH-HHHHHHHhC----CCCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 544 345555443 4568999999999999988888765 3455556655432211 1111123456899999
Q ss_pred chHHHHHHHcCccCCCCeeEEEEec
Q 011104 231 PGTIKKWMSAKKLGFSRLKILVYDE 255 (493)
Q Consensus 231 p~~l~~~l~~~~~~~~~~~~iVlDE 255 (493)
. +-...+++..+++||.-+
T Consensus 88 ~------~~~~G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 88 D------LLARGIDVQQVSLVINYD 106 (165)
T ss_dssp G------GGTTTCCCCSCSEEEESS
T ss_pred C------hhhcCCCcccCCEEEEeC
Confidence 3 233466788888887643
No 261
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=76.54 E-value=1.3 Score=37.76 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=16.7
Q ss_pred cCCCCccEEEeccCCCchhHHh
Q 011104 136 LTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 136 l~~~~~~viv~a~TGsGKT~~~ 157 (493)
..| +-++++|++|||||...
T Consensus 10 ~~~--~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARI--PPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCC--CCEEEECCTTSCHHHHH
T ss_pred ccC--CEEEEECCCCCCHHHHH
Confidence 445 78999999999999853
No 262
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=76.34 E-value=1.3 Score=37.59 Aligned_cols=17 Identities=29% Similarity=0.260 Sum_probs=15.5
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+.+++.|++|||||+..
T Consensus 26 ~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 78999999999999874
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=76.28 E-value=1.3 Score=36.57 Aligned_cols=17 Identities=24% Similarity=0.392 Sum_probs=15.1
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.-+++.|++|||||...
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 67999999999999864
No 264
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=76.24 E-value=2.3 Score=41.88 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=22.1
Q ss_pred hHHHhhhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 126 KIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 126 ~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
..-..++-.+..+ .++++.||+|+|||..+
T Consensus 29 ~~i~~l~~al~~~--~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 29 HAIRLCLLAALSG--ESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHHHT--CEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHhcC--CeeEeecCchHHHHHHH
Confidence 3334445555666 89999999999999853
No 265
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=76.14 E-value=1.4 Score=42.04 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=22.0
Q ss_pred hhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 131 SLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 131 ~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
.+..++.|.+-.++..|+||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 566678886567899999999999874
No 266
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=76.05 E-value=1.4 Score=40.67 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=15.4
Q ss_pred ccEEEeccCCCchhHHhH
Q 011104 141 RNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~ 158 (493)
+-+++.||||||||....
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 579999999999998643
No 267
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=76.04 E-value=1.2 Score=36.57 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=14.8
Q ss_pred ccEEEeccCCCchhHHhH
Q 011104 141 RNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~ 158 (493)
.-+++.|++|||||+..-
T Consensus 2 ~~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAK 19 (179)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 358899999999998643
No 268
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=76.00 E-value=1.7 Score=37.31 Aligned_cols=74 Identities=14% Similarity=0.155 Sum_probs=49.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcc--cccCCCCCCCcEEEeCchHHHHHHHcCccCCCC
Q 011104 170 KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSR 247 (493)
Q Consensus 170 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 247 (493)
.+.++||.|+++.-+..+++.+... ++.+..+++..+.... .......+..+|+|+|. +-...+++..
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidi~~ 99 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD------VAARGLDIPQ 99 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT------TTTCSSSCCC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC------hhhcCCCCcc
Confidence 3558999999999999988888775 4555566666543221 11112234578999994 3345677888
Q ss_pred eeEEEE
Q 011104 248 LKILVY 253 (493)
Q Consensus 248 ~~~iVl 253 (493)
+++||.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 888874
No 269
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=75.98 E-value=1.6 Score=35.98 Aligned_cols=90 Identities=9% Similarity=0.109 Sum_probs=55.9
Q ss_pred CchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcc--cccCCCCCCCcEEE
Q 011104 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVI 228 (493)
Q Consensus 151 sGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv 228 (493)
..|.. .+..++... .+.++||.|+++..+..+++.+... ++.+..+++....... ...........|+|
T Consensus 16 ~~K~~-~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLv 86 (172)
T 1t5i_A 16 NEKNR-KLFDLLDVL----EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILV 86 (172)
T ss_dssp GGHHH-HHHHHHHHS----CCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEE
T ss_pred HHHHH-HHHHHHHhC----CCCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEE
Confidence 45654 345555443 4558999999999999988888775 3455556665432211 11111234578999
Q ss_pred eCchHHHHHHHcCccCCCCeeEEEEec
Q 011104 229 GTPGTIKKWMSAKKLGFSRLKILVYDE 255 (493)
Q Consensus 229 ~Tp~~l~~~l~~~~~~~~~~~~iVlDE 255 (493)
+|. +-...+++..+++||.=+
T Consensus 87 aT~------~~~~Gldi~~~~~Vi~~d 107 (172)
T 1t5i_A 87 ATN------LFGRGMDIERVNIAFNYD 107 (172)
T ss_dssp ESS------CCSTTCCGGGCSEEEESS
T ss_pred ECC------chhcCcchhhCCEEEEEC
Confidence 994 233456778888887633
No 270
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=77.80 E-value=0.55 Score=38.77 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCc--ccccCCCCCCCcEEEeCchHHHHHHHcCccCCCC
Q 011104 170 KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNY--VPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSR 247 (493)
Q Consensus 170 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 247 (493)
.+.++||.|+++..+..+++.+... ++.+..++++.+... ............|+|+|. . -...+++..
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-~-----~~~Gid~~~ 98 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-V-----AARGIDIPD 98 (170)
Confidence 4568999999999998888887765 344444555433221 122223344678999993 1 223455667
Q ss_pred eeEEEEe
Q 011104 248 LKILVYD 254 (493)
Q Consensus 248 ~~~iVlD 254 (493)
+++||.-
T Consensus 99 ~~~Vi~~ 105 (170)
T 2yjt_D 99 VSHVFNF 105 (170)
Confidence 7777653
No 271
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=75.93 E-value=3.9 Score=31.70 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=31.7
Q ss_pred CcEEEEc-CChhhHHHHHHHHHhCCCcEEEecCCCCH
Q 011104 351 GQTIIFV-RTKNSASALHKALKDFGYEVTTIMGATIQ 386 (493)
Q Consensus 351 ~~~lVf~-~s~~~~~~l~~~L~~~~~~~~~l~~~~~~ 386 (493)
.+++||| .+-..+..++..|...|+++..+.|++..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 7899999 57778889999999999999999999754
No 272
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=75.83 E-value=1.4 Score=41.28 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=20.7
Q ss_pred hhhhhcCCCCccEEEeccCCCchhHH
Q 011104 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (493)
Q Consensus 131 ~i~~il~~~~~~viv~a~TGsGKT~~ 156 (493)
.+..++.|.+-.++.-|+||||||..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceE
Confidence 34556778656789999999999987
No 273
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=75.74 E-value=2.4 Score=31.11 Aligned_cols=37 Identities=11% Similarity=0.157 Sum_probs=33.2
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCC
Q 011104 349 KMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATI 385 (493)
Q Consensus 349 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~ 385 (493)
+..+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4678999999999999999999999999999999864
No 274
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=75.69 E-value=1.3 Score=40.48 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.0
Q ss_pred ccEEEeccCCCchhHHhH
Q 011104 141 RNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~ 158 (493)
.-+++.||||||||..+.
T Consensus 11 ~~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCccCHHHHHH
Confidence 468899999999998643
No 275
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=75.66 E-value=1.4 Score=40.95 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=20.3
Q ss_pred hhhhcCCCCccEEEeccCCCchhHH
Q 011104 132 LPMILTPPYRNLIAQARNGSGKTTC 156 (493)
Q Consensus 132 i~~il~~~~~~viv~a~TGsGKT~~ 156 (493)
+..++.|.+-.++..|+||||||..
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEE
Confidence 4455778666789999999999986
No 276
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=75.64 E-value=1.3 Score=42.06 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=20.4
Q ss_pred hhhhcCCCCccEEEeccCCCchhHHh
Q 011104 132 LPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 132 i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
+..++.|.+-.+|..|+||||||...
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 34557785567899999999999873
No 277
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=75.64 E-value=1.7 Score=36.77 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=14.9
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+-+++.||||+|||..+
T Consensus 35 ~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETA 51 (205)
T ss_dssp EEEEEECCCTTTTHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 78999999999998653
No 278
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=75.58 E-value=1.5 Score=40.95 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=20.4
Q ss_pred hhhhcCCCCccEEEeccCCCchhHH
Q 011104 132 LPMILTPPYRNLIAQARNGSGKTTC 156 (493)
Q Consensus 132 i~~il~~~~~~viv~a~TGsGKT~~ 156 (493)
+..++.|.+-.++..|+||||||..
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceE
Confidence 4556778656789999999999986
No 279
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=75.54 E-value=3.3 Score=37.74 Aligned_cols=17 Identities=18% Similarity=0.397 Sum_probs=15.4
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.|++|+|||+.+
T Consensus 26 ~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVA 42 (304)
T ss_dssp SCEEEESCTTSCHHHHH
T ss_pred CcEEEECCCCchHHHHH
Confidence 78999999999999864
No 280
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=75.53 E-value=2.7 Score=39.49 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=15.8
Q ss_pred ccEEEeccCCCchhHHhH
Q 011104 141 RNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~ 158 (493)
+.+++.||+|+|||..+-
T Consensus 71 ~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 689999999999998743
No 281
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=75.53 E-value=4.3 Score=37.37 Aligned_cols=54 Identities=15% Similarity=-0.036 Sum_probs=31.9
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCC---CCCCeEEEEcCCHHH-HHHHHHHHHHH
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPN---LKAPQALCICPTREL-AIQNLEVLRKM 194 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~Pt~~L-a~q~~~~~~~~ 194 (493)
.-+++.|++|+|||...+..+....... ..+..++++.-...+ ..++.+.+..+
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 7899999999999987655444432221 114567777644322 34444444444
No 282
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=75.48 E-value=1.3 Score=36.84 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=15.7
Q ss_pred ccEEEeccCCCchhHHhH
Q 011104 141 RNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~ 158 (493)
+.+++.|++|||||...-
T Consensus 6 ~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 679999999999998643
No 283
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=75.46 E-value=16 Score=35.01 Aligned_cols=44 Identities=20% Similarity=0.142 Sum_probs=26.2
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEc--CCHHHHHH
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC--PTRELAIQ 186 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--Pt~~La~q 186 (493)
+.++++++.|+|||+...--+. .+.. ..+.+++++. |.+..+..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~-~l~~-~~G~kVllvd~D~~r~~a~~ 146 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGK-FLRE-KHKKKVLVVSADVYRPAAIK 146 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH-HHHH-TSCCCEEEEECCCSSTTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHH-hcCCeEEEEecCCCCccHHH
Confidence 5788889999999987443222 2221 1145666665 55554443
No 284
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=75.30 E-value=1.2 Score=41.31 Aligned_cols=26 Identities=19% Similarity=0.278 Sum_probs=20.3
Q ss_pred hhhhcCCCCccEEEeccCCCchhHHh
Q 011104 132 LPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 132 i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
+..++.|.+-.++..|+||||||...
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 44556785567899999999999873
No 285
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=75.19 E-value=1.4 Score=37.36 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=15.2
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.-+++.|++|||||+..
T Consensus 7 ~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CEEEEECSTTSCHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 78999999999999864
No 286
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=75.13 E-value=8 Score=32.94 Aligned_cols=95 Identities=14% Similarity=0.115 Sum_probs=59.5
Q ss_pred EEeCCChHHHHHHHHHHHHHhcc---cCCcEEEEcCChhhHHHHHHHHHhC--------CCcEEEecCCCCHHHHHHHHH
Q 011104 326 KVYCPDELAKVMVIRDRIFELGE---KMGQTIIFVRTKNSASALHKALKDF--------GYEVTTIMGATIQEERDKIVK 394 (493)
Q Consensus 326 ~~~~~~~~~~~~~l~~~l~~~~~---~~~~~lVf~~s~~~~~~l~~~L~~~--------~~~~~~l~~~~~~~~r~~~~~ 394 (493)
.+..+....|.....-.+..... ...++||.++++..+..+++.+... ++.+..++|+.+.......
T Consensus 45 lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-- 122 (219)
T 1q0u_A 45 VGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK-- 122 (219)
T ss_dssp EEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCC--
T ss_pred EEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHH--
Confidence 44555666665543322222221 3468999999999999988877653 6788899998754332211
Q ss_pred HHHcCCCcEEEEeC-----ccc-cCCCCCCCCEEEE
Q 011104 395 EFKDGLTQVLISTD-----VLA-RGFDQQQVNLIVN 424 (493)
Q Consensus 395 ~f~~g~~~vLv~T~-----~~~-~Gldi~~v~~Vi~ 424 (493)
+ .....|+|+|. .+. ..+++..+++||.
T Consensus 123 -~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 123 -L-NVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp -C-SSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred -c-CCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 1 23568999994 222 2456777888774
No 287
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=75.12 E-value=4.3 Score=37.75 Aligned_cols=54 Identities=11% Similarity=0.007 Sum_probs=31.8
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCC---CCCCeEEEEcCCHHH-HHHHHHHHHHH
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPN---LKAPQALCICPTREL-AIQNLEVLRKM 194 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~Pt~~L-a~q~~~~~~~~ 194 (493)
.-+++.|++|+|||...+..+....... ..+..++++.-...+ ..++.+.+..+
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 6789999999999987655444433221 134567777644321 23444444443
No 288
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=75.12 E-value=8 Score=40.67 Aligned_cols=71 Identities=15% Similarity=0.250 Sum_probs=47.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCc-c----ccC-C-CCCC
Q 011104 350 MGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-L----ARG-F-DQQQ 418 (493)
Q Consensus 350 ~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~----~~G-l-di~~ 418 (493)
.+++||.++++..+......++.. ++.+..+||+.+...+...+. +...|+|+|.- + ..+ + .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999999888777664 899999999987655433221 24689999942 2 222 3 5667
Q ss_pred CCEEEE
Q 011104 419 VNLIVN 424 (493)
Q Consensus 419 v~~Vi~ 424 (493)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788885
No 289
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=75.03 E-value=1.6 Score=40.82 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=20.8
Q ss_pred hhhhhcCCCCccEEEeccCCCchhHH
Q 011104 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (493)
Q Consensus 131 ~i~~il~~~~~~viv~a~TGsGKT~~ 156 (493)
.+..++.|.+-.++..|+||||||..
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceee
Confidence 34556778656789999999999987
No 290
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=74.96 E-value=5.4 Score=34.79 Aligned_cols=73 Identities=23% Similarity=0.355 Sum_probs=49.9
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCc-----ccc---CCCC
Q 011104 349 KMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-----LAR---GFDQ 416 (493)
Q Consensus 349 ~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~~~---Gldi 416 (493)
.+.++||.+++++-+..+++.+... ++.+..++|+.....+ ......+...|+|+|.- +.. .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 4557999999999999999888764 6777777765322111 11223456789999932 112 5788
Q ss_pred CCCCEEEE
Q 011104 417 QQVNLIVN 424 (493)
Q Consensus 417 ~~v~~Vi~ 424 (493)
.++.+||.
T Consensus 174 ~~~~~lVi 181 (245)
T 3dkp_A 174 ASVEWLVV 181 (245)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 88998885
No 291
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=74.95 E-value=1.2 Score=37.21 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=14.8
Q ss_pred ccEEEeccCCCchhHH
Q 011104 141 RNLIAQARNGSGKTTC 156 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~ 156 (493)
..+++.|++|||||+.
T Consensus 10 ~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTI 25 (191)
T ss_dssp EEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 7899999999999985
No 292
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=74.80 E-value=2.9 Score=31.06 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=32.6
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCC
Q 011104 348 EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGAT 384 (493)
Q Consensus 348 ~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~ 384 (493)
.+..+++|||.+-..+...+..|...|+++..+.|++
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 3467899999998889999999999999998888876
No 293
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=74.78 E-value=1.6 Score=40.35 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=21.3
Q ss_pred hhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 131 SLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 131 ~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
.+..++.|.+-.++..|+||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 455667785567899999999999863
No 294
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=74.70 E-value=1.5 Score=41.26 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=20.8
Q ss_pred hhhhhcCCCCccEEEeccCCCchhHH
Q 011104 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (493)
Q Consensus 131 ~i~~il~~~~~~viv~a~TGsGKT~~ 156 (493)
.+..++.|.+-.++..|+||||||..
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 34556788656789999999999986
No 295
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=74.61 E-value=1.6 Score=41.15 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=20.4
Q ss_pred hhhhcCCCCccEEEeccCCCchhHHh
Q 011104 132 LPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 132 i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
+..++.|.+-.++..|+||||||...
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeEe
Confidence 34567785567899999999999863
No 296
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=74.61 E-value=2.1 Score=36.60 Aligned_cols=32 Identities=22% Similarity=0.060 Sum_probs=22.7
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEc
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 178 (493)
.-+++.|++|+|||.....-+. ..+..++++.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~------~~~~~v~~i~ 52 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL------LSGKKVAYVD 52 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH------HHCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHH------HcCCcEEEEE
Confidence 7899999999999986544333 1344666665
No 297
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=74.59 E-value=1.6 Score=40.63 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=21.1
Q ss_pred hhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 131 SLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 131 ~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
.+..++.|.+-.++..|+||||||...
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 345567785567899999999999873
No 298
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=74.56 E-value=1.5 Score=39.18 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=15.0
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+.+++.||+|+|||..+
T Consensus 45 ~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp SCCCCBCSSCSSHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 56999999999999864
No 299
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=74.51 E-value=2.5 Score=31.27 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=33.4
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCC
Q 011104 348 EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATI 385 (493)
Q Consensus 348 ~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~ 385 (493)
.+..+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 34678999999998999999999999999999999864
No 300
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=74.46 E-value=1.6 Score=40.97 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=20.9
Q ss_pred hhhhhcCCCCccEEEeccCCCchhHH
Q 011104 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (493)
Q Consensus 131 ~i~~il~~~~~~viv~a~TGsGKT~~ 156 (493)
.+..++.|.+-.++..|+||||||..
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 45556788666789999999999986
No 301
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=74.40 E-value=1.3 Score=39.24 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=13.8
Q ss_pred cEEEeccCCCchhHHh
Q 011104 142 NLIAQARNGSGKTTCF 157 (493)
Q Consensus 142 ~viv~a~TGsGKT~~~ 157 (493)
-+++.|++|||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999864
No 302
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=74.38 E-value=1.5 Score=36.66 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=15.2
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.-+++.|++|||||+..
T Consensus 4 ~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 67999999999999864
No 303
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=74.19 E-value=5.4 Score=39.65 Aligned_cols=71 Identities=18% Similarity=0.316 Sum_probs=50.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCc-c----ccC-C-CCCC
Q 011104 350 MGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-L----ARG-F-DQQQ 418 (493)
Q Consensus 350 ~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~----~~G-l-di~~ 418 (493)
..++||.++++.-+...+..+... ++.+..++|+.+...+...+. +...|+|+|.- + ..+ + .+.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999999888888777654 899999999986554432221 13679999942 2 222 3 5667
Q ss_pred CCEEEE
Q 011104 419 VNLIVN 424 (493)
Q Consensus 419 v~~Vi~ 424 (493)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788875
No 304
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=74.17 E-value=1.6 Score=40.65 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=21.2
Q ss_pred hhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 131 SLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 131 ~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
.+..++.|.+-.++..|+||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 345567786567899999999999863
No 305
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=74.07 E-value=7.3 Score=38.72 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=48.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCc-c----ccC-C-CCCC
Q 011104 350 MGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-L----ARG-F-DQQQ 418 (493)
Q Consensus 350 ~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~----~~G-l-di~~ 418 (493)
..++||.++++.-+......+... ++.+..+||+.+...+...+. . ...|+|+|.- + ..+ + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI---E-DSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH---H-HCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh---C-CCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999998888877764 899999999987655433221 1 2679999942 2 222 3 5777
Q ss_pred CCEEEE
Q 011104 419 VNLIVN 424 (493)
Q Consensus 419 v~~Vi~ 424 (493)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888775
No 306
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=74.00 E-value=2 Score=36.65 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=15.2
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+-+++.||+|+|||...
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 78999999999999863
No 307
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=73.88 E-value=1.5 Score=37.15 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=15.2
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+-+.+.||+|+|||...
T Consensus 5 ~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 78999999999999853
No 308
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=73.85 E-value=1.6 Score=40.83 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=21.0
Q ss_pred hhhhhcCCCCccEEEeccCCCchhHH
Q 011104 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (493)
Q Consensus 131 ~i~~il~~~~~~viv~a~TGsGKT~~ 156 (493)
.+..++.|.+-.++.-|+||||||..
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 45666788656788999999999987
No 309
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=73.73 E-value=1.6 Score=36.94 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=15.1
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.-+.+.||+|||||+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 78899999999999853
No 310
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=73.67 E-value=1.6 Score=41.70 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=21.7
Q ss_pred hhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 131 SLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 131 ~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
.+..++.|.+-.++..|+||||||...
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 456667886667899999999999873
No 311
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=73.59 E-value=1.9 Score=48.81 Aligned_cols=90 Identities=17% Similarity=0.147 Sum_probs=56.2
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRP 220 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (493)
+-+.+.+|.|||||+.++..+.+.. ..+..++++.+-.+|.... +++++-.+.
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~---~~g~~~~~i~~e~~~~~~~---~~~~Gv~~~--------------------- 1484 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY---ARKLGVDID--------------------- 1484 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEECTTSCCCHHH---HHHTTCCGG---------------------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH---hcCCeEEEEecCCCCCHHH---HHHcCCCHH---------------------
Confidence 7899999999999998655443322 3466788888876665553 445543221
Q ss_pred CCCCcEEEeCchHHHHHHHc--CccCCCCeeEEEEecchhhhc
Q 011104 221 PVTAQVVIGTPGTIKKWMSA--KKLGFSRLKILVYDEADHMLD 261 (493)
Q Consensus 221 ~~~~~Ilv~Tp~~l~~~l~~--~~~~~~~~~~iVlDEah~l~~ 261 (493)
++++.-|+.--++|.- .-+.-..+++||+|.+..+..
T Consensus 1485 ----~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 ----NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ----GCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred ----HeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 3677777543222211 011223478999999987764
No 312
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=73.57 E-value=4.7 Score=34.99 Aligned_cols=39 Identities=15% Similarity=-0.079 Sum_probs=24.6
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCC---CCCCeEEEEcC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPN---LKAPQALCICP 179 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~P 179 (493)
.-+.+.|++|+|||......+...+... ..+..++++.-
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 7899999999999987555444323211 01345666653
No 313
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=73.55 E-value=13 Score=35.72 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=52.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCc-----ccc-CCCCCCC
Q 011104 350 MGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-----LAR-GFDQQQV 419 (493)
Q Consensus 350 ~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~~~-Gldi~~v 419 (493)
..++||.+++++.+..+++.+.+. ++.+..++|+.+...+...+ .....|+|+|.- +.+ .+++.++
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccccC
Confidence 458999999999999998888764 57888999999876654433 245789999942 222 3567788
Q ss_pred CEEEE
Q 011104 420 NLIVN 424 (493)
Q Consensus 420 ~~Vi~ 424 (493)
++||.
T Consensus 205 ~~lVl 209 (434)
T 2db3_A 205 RFVVL 209 (434)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 88775
No 314
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=73.33 E-value=1.6 Score=39.84 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=14.8
Q ss_pred ccEEEeccCCCchhHH
Q 011104 141 RNLIAQARNGSGKTTC 156 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~ 156 (493)
..+.+.||+|||||+.
T Consensus 127 e~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSML 142 (305)
T ss_dssp SEEEEECSSSSSHHHH
T ss_pred CEEEEECCCCCcHHHH
Confidence 8899999999999985
No 315
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=73.28 E-value=1.7 Score=40.67 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=21.4
Q ss_pred hhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 131 SLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 131 ~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
.+..++.|.+-.++.-|+||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 456667886567899999999999873
No 316
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=73.17 E-value=1.6 Score=41.11 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=21.1
Q ss_pred hhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 131 SLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 131 ~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
.+..++.|.+-.++.-|+||||||...
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 345567785567899999999999874
No 317
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=73.12 E-value=3.6 Score=29.70 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=31.7
Q ss_pred CcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCC
Q 011104 351 GQTIIFVRTKNSASALHKALKDFGYEVTTIMGATI 385 (493)
Q Consensus 351 ~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~ 385 (493)
.+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999998899999999999999888888874
No 318
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=72.92 E-value=5.9 Score=35.15 Aligned_cols=45 Identities=16% Similarity=0.010 Sum_probs=29.9
Q ss_pred HHHHHHHhhCCCCCCchHHH-hhhhhhcCCC---CccEEEeccCCCchhHHhH
Q 011104 110 ELLKGLYVEMKFQKPSKIQA-ISLPMILTPP---YRNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 110 ~~~~~l~~~~g~~~~~~~Q~-~~i~~il~~~---~~~viv~a~TGsGKT~~~~ 158 (493)
++.+-|.. .|+. |++- .++..++.|. .+.+++.||+|+|||+.+.
T Consensus 74 ~i~~~l~~-qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILEL-NGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHH-TTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHH-cCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 56666654 6766 5543 2355556653 2369999999999998754
No 319
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=72.89 E-value=4.1 Score=34.19 Aligned_cols=87 Identities=16% Similarity=0.205 Sum_probs=53.5
Q ss_pred CchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcc--cccCCCCCCCcEEE
Q 011104 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVI 228 (493)
Q Consensus 151 sGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv 228 (493)
..|.. +++-++.. .+.++||.|+++.-+..+.+.+... ++.+..+++....... ...........|+|
T Consensus 40 ~~K~~-~L~~~l~~-----~~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLv 109 (191)
T 2p6n_A 40 EAKMV-YLLECLQK-----TPPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLV 109 (191)
T ss_dssp GGHHH-HHHHHHTT-----SCSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHH-HHHHHHHh-----CCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 45643 34444432 2357999999999999998888775 3555556665433211 11111223568999
Q ss_pred eCchHHHHHHHcCccCCCCeeEEEE
Q 011104 229 GTPGTIKKWMSAKKLGFSRLKILVY 253 (493)
Q Consensus 229 ~Tp~~l~~~l~~~~~~~~~~~~iVl 253 (493)
+|. +-...+++.++++||.
T Consensus 110 aT~------~~~~Gldi~~v~~VI~ 128 (191)
T 2p6n_A 110 ATD------VASKGLDFPAIQHVIN 128 (191)
T ss_dssp ECH------HHHTTCCCCCCSEEEE
T ss_pred EcC------chhcCCCcccCCEEEE
Confidence 993 2224667888888876
No 320
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=72.87 E-value=1.6 Score=40.94 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=20.9
Q ss_pred hhhhhcCCCCccEEEeccCCCchhHH
Q 011104 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (493)
Q Consensus 131 ~i~~il~~~~~~viv~a~TGsGKT~~ 156 (493)
.+..++.|.+-.++..|+||||||..
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 45566788656789999999999986
No 321
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=72.69 E-value=3.2 Score=34.64 Aligned_cols=90 Identities=19% Similarity=0.210 Sum_probs=49.6
Q ss_pred CCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCccc--ccCCCCCCCcEE
Q 011104 150 GSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQVV 227 (493)
Q Consensus 150 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Il 227 (493)
.+.|.. +++-++... ..+.++||.|+++.-+..+++.+... ++.+..++++.+..... ......+...|+
T Consensus 29 ~~~K~~-~L~~ll~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 100 (185)
T 2jgn_A 29 ESDKRS-FLLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPIL 100 (185)
T ss_dssp GGGHHH-HHHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEE
T ss_pred cHHHHH-HHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 345654 344455443 24568999999999999988888765 45555566654332211 111122356799
Q ss_pred EeCchHHHHHHHcCccCCCCeeEEEE
Q 011104 228 IGTPGTIKKWMSAKKLGFSRLKILVY 253 (493)
Q Consensus 228 v~Tp~~l~~~l~~~~~~~~~~~~iVl 253 (493)
|+|. +-...+++..+++||.
T Consensus 101 vaT~------~~~~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 101 VATA------VAARGLDISNVKHVIN 120 (185)
T ss_dssp EEEC------------CCCSBSEEEE
T ss_pred EEcC------hhhcCCCcccCCEEEE
Confidence 9993 1223556778888776
No 322
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=72.64 E-value=1.8 Score=36.28 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=14.4
Q ss_pred ccEEEeccCCCchhHH
Q 011104 141 RNLIAQARNGSGKTTC 156 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~ 156 (493)
|-++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6699999999999985
No 323
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=72.63 E-value=2.4 Score=35.86 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=16.3
Q ss_pred CCCCccEEEeccCCCchhHHh
Q 011104 137 TPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 137 ~~~~~~viv~a~TGsGKT~~~ 157 (493)
.| +-+++.||+|+|||...
T Consensus 18 ~g--~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GR--KTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SC--CEEEEECCTTSSHHHHH
T ss_pred CC--CEEEEECcCCCCHHHHH
Confidence 46 88999999999999853
No 324
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=72.60 E-value=1.6 Score=36.00 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.6
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.-+++.|++|||||+..
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 45899999999999864
No 325
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=72.60 E-value=1.5 Score=41.22 Aligned_cols=27 Identities=22% Similarity=0.194 Sum_probs=21.1
Q ss_pred hhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 131 SLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 131 ~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
.+..++.|.+-.++..|+||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 455667785567889999999999873
No 326
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=72.58 E-value=1.6 Score=35.87 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=15.7
Q ss_pred ccEEEeccCCCchhHHhH
Q 011104 141 RNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~ 158 (493)
.-+.+.|++|||||+.+-
T Consensus 10 ei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 789999999999998643
No 327
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=72.55 E-value=4.4 Score=36.77 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=15.3
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.||+|+|||..+
T Consensus 51 ~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 68999999999999864
No 328
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=72.32 E-value=3.5 Score=41.07 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=17.9
Q ss_pred ccEEEeccCCCchhHHhHHHHHh
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLS 163 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~ 163 (493)
.+++|.|.||||||.+.-..++.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~s 237 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLS 237 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999874443433
No 329
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=72.25 E-value=11 Score=34.24 Aligned_cols=119 Identities=12% Similarity=0.038 Sum_probs=68.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCcc------c-cCCCCC
Q 011104 350 MGQTIIFVRTKNSASALHKALKDF-----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL------A-RGFDQQ 417 (493)
Q Consensus 350 ~~~~lVf~~s~~~~~~l~~~L~~~-----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~------~-~Gldi~ 417 (493)
..++||.+++++.|..++..+... ++.+..++|+.....+. .....|||+|.-. . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 347999999999999988887753 56778887776532211 3456899999532 1 357788
Q ss_pred CCCEEEEccCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHhCCC
Q 011104 418 QVNLIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIK 481 (493)
Q Consensus 418 ~v~~Vi~~~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~ 481 (493)
++.+||.-..-.. .+...|...+-+..+.-....-+.+++.--..........++..+
T Consensus 235 ~l~~lVlDEad~l------~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p 292 (300)
T 3fmo_B 235 KIKVFVLDEADVM------IATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP 292 (300)
T ss_dssp GCSEEEETTHHHH------HHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSC
T ss_pred hceEEEEeCHHHH------hhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCC
Confidence 8999885322100 000012222222222222334455665544555666666666543
No 330
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=72.12 E-value=1.9 Score=40.51 Aligned_cols=26 Identities=27% Similarity=0.195 Sum_probs=21.3
Q ss_pred hhhhhcCCCCccEEEeccCCCchhHH
Q 011104 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (493)
Q Consensus 131 ~i~~il~~~~~~viv~a~TGsGKT~~ 156 (493)
.+..++.|.+-.++.-|+||||||..
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 45667788656789999999999986
No 331
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=71.82 E-value=6.3 Score=36.11 Aligned_cols=48 Identities=17% Similarity=0.032 Sum_probs=29.7
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHH
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLR 192 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~ 192 (493)
.-+++.|++|+|||...+--+..... .+..+++++-- .-..|+...+.
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~---~g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSD---NDDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHT---TTCEEEEEESS-SCHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEECC-CCHHHHHHHHH
Confidence 78999999999999765544443332 23567777633 23344444443
No 332
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=71.78 E-value=2 Score=36.48 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=14.8
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+.+++.||+|+|||..+
T Consensus 59 n~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFG 75 (212)
T ss_dssp SEEEEESCGGGCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46999999999999864
No 333
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=71.74 E-value=1.8 Score=35.41 Aligned_cols=16 Identities=19% Similarity=0.083 Sum_probs=14.0
Q ss_pred cEEEeccCCCchhHHh
Q 011104 142 NLIAQARNGSGKTTCF 157 (493)
Q Consensus 142 ~viv~a~TGsGKT~~~ 157 (493)
.+++.|+.|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999864
No 334
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=71.73 E-value=1.7 Score=40.95 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=20.6
Q ss_pred hhhhhcCCCCccEEEeccCCCchhHH
Q 011104 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (493)
Q Consensus 131 ~i~~il~~~~~~viv~a~TGsGKT~~ 156 (493)
.+..++.|.+-.++..|+||||||..
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCccee
Confidence 34556778656789999999999986
No 335
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=71.68 E-value=2 Score=41.64 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=31.8
Q ss_pred CCCCcccCCCCHHHHHHHHhhCCCCCCchHHHhhhhhhcC---CCCccEEEeccCCCchhHHh
Q 011104 98 SATTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILT---PPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~~i~~il~---~~~~~viv~a~TGsGKT~~~ 157 (493)
+..+|+++.=...+.+.|..... .|+.. |.+.. ...+.+++.||+|+|||+.+
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~----~p~~~---~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVI----LPIKF---PHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHT----HHHHC---TTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH----HHhhC---HHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 35578888777777777764211 01110 11111 11268999999999999864
No 336
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=71.65 E-value=20 Score=32.73 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=14.8
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+-+.+.+++|+|||+..
T Consensus 106 ~vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSL 122 (320)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 67889999999999864
No 337
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=71.40 E-value=2 Score=35.83 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=15.4
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.|++|||||.+.
T Consensus 11 ~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 11 INILITGTPGTGKTSMA 27 (184)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 78999999999999864
No 338
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=71.31 E-value=2 Score=35.16 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=15.0
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.|+.|||||+..
T Consensus 5 ~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999863
No 339
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=71.25 E-value=1.8 Score=40.68 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=15.5
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.||+|+|||+.+
T Consensus 52 ~~vll~GppGtGKT~la 68 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999864
No 340
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=71.24 E-value=2 Score=35.80 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=14.2
Q ss_pred ccEEEeccCCCchhHH
Q 011104 141 RNLIAQARNGSGKTTC 156 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~ 156 (493)
+-+.+.||+|+|||+.
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5688999999999985
No 341
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=71.18 E-value=2.1 Score=41.28 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=21.3
Q ss_pred hhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 131 SLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 131 ~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
.+..++.|.+-.+|..|+||||||...
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 345567886667899999999999873
No 342
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=71.05 E-value=2.7 Score=36.71 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=19.6
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~ 167 (493)
.-+.+.||.|||||+ ++-++..+..
T Consensus 32 e~~~iiG~nGsGKST--Ll~~l~Gl~~ 56 (235)
T 3tif_A 32 EFVSIMGPSGSGKST--MLNIIGCLDK 56 (235)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCcHHH--HHHHHhcCCC
Confidence 789999999999998 4555655543
No 343
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=71.04 E-value=29 Score=32.68 Aligned_cols=73 Identities=18% Similarity=0.336 Sum_probs=53.1
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeC-----ccc-cCCCCCC
Q 011104 349 KMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD-----VLA-RGFDQQQ 418 (493)
Q Consensus 349 ~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~-~Gldi~~ 418 (493)
...++||.++++..+..+++.+... +..+..++|+...... +..+..+...|+|+|. .+. ..++...
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4678999999999999988888754 6788888888765443 3445567789999994 222 3356667
Q ss_pred CCEEEE
Q 011104 419 VNLIVN 424 (493)
Q Consensus 419 v~~Vi~ 424 (493)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 788774
No 344
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=70.98 E-value=1.6 Score=36.29 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=15.6
Q ss_pred ccEEEeccCCCchhHHhH
Q 011104 141 RNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~ 158 (493)
..+++.|++|||||+..-
T Consensus 5 ~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 679999999999998643
No 345
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=70.89 E-value=2.3 Score=38.21 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=30.6
Q ss_pred CCCCcccCCCCHHHHHHHHhhCC--CCCCchHHHhhhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 98 SATTFEDLNLSPELLKGLYVEMK--FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~g--~~~~~~~Q~~~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
+..+|+++.-.......+.. +- +..+ ..+..+--...+.+++.||+|+|||..+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~-----~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKE-IVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHH-HHHHHHCH-----HHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHH-HHHHHHCH-----HHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 35678888777777666653 21 1111 1111110000145999999999999853
No 346
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=70.73 E-value=1.7 Score=39.51 Aligned_cols=17 Identities=24% Similarity=0.081 Sum_probs=14.9
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+.+++.||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57999999999999863
No 347
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=70.55 E-value=8.7 Score=30.47 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=31.6
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHHhCCC-cEEEecCCCC
Q 011104 348 EKMGQTIIFVRTKNSASALHKALKDFGY-EVTTIMGATI 385 (493)
Q Consensus 348 ~~~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~l~~~~~ 385 (493)
.+..+++|||.+-..+...+..|...|+ ++..+.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 3467899999998888999999999999 5999999874
No 348
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=70.35 E-value=2.4 Score=39.01 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=15.3
Q ss_pred ccEEEeccCCCchhHHhH
Q 011104 141 RNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~ 158 (493)
+.++++||||||||....
T Consensus 6 ~~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 468999999999998643
No 349
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=70.24 E-value=4.4 Score=39.43 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=15.4
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+.+++.||+|+|||..+
T Consensus 64 ~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 68999999999999864
No 350
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=70.15 E-value=1.6 Score=40.41 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.8
Q ss_pred cCCCCccEEEeccCCCchhHHh
Q 011104 136 LTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 136 l~~~~~~viv~a~TGsGKT~~~ 157 (493)
..+ .++++.||+|+|||..+
T Consensus 44 ~~~--~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 44 CTG--GHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHT--CCEEEESCCCHHHHHHH
T ss_pred HcC--CeEEEECCCCCcHHHHH
Confidence 445 78999999999999753
No 351
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=69.90 E-value=2.2 Score=36.30 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=16.1
Q ss_pred hhcCCCCccEEEeccCCCchhHH
Q 011104 134 MILTPPYRNLIAQARNGSGKTTC 156 (493)
Q Consensus 134 ~il~~~~~~viv~a~TGsGKT~~ 156 (493)
.+-.| .-+.+.||+|||||+.
T Consensus 16 ~i~~G--ei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVG--RVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CC--CEEEEECSTTSSHHHH
T ss_pred CCCCC--CEEEEECCCCCCHHHH
Confidence 34556 8899999999999985
No 352
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=69.83 E-value=2.2 Score=39.33 Aligned_cols=35 Identities=17% Similarity=0.074 Sum_probs=22.0
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcCC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT 180 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 180 (493)
.-+++.|+.|||||+.. -.+... ..+.++.|+.|.
T Consensus 5 ~v~~i~G~~GaGKTTll--~~l~~~---~~~~~~aVi~~d 39 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLL--RHILNE---QHGYKIAVIENE 39 (318)
T ss_dssp EEEEEEESSSSSCHHHH--HHHHHS---CCCCCEEEECSS
T ss_pred cEEEEEecCCCCHHHHH--HHHHhh---cCCCcEEEEEec
Confidence 35789999999999853 222222 134456666664
No 353
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=69.80 E-value=8.1 Score=32.61 Aligned_cols=96 Identities=20% Similarity=0.160 Sum_probs=54.2
Q ss_pred EEEeCCChHHHHHHHHHHHHHhc------ccCCcEEEEcCChhhHHH-HHHHHHh---CCCcEEEecCCCCHHHHHHHHH
Q 011104 325 YKVYCPDELAKVMVIRDRIFELG------EKMGQTIIFVRTKNSASA-LHKALKD---FGYEVTTIMGATIQEERDKIVK 394 (493)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~l~~~~------~~~~~~lVf~~s~~~~~~-l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~ 394 (493)
..+..+....|.......+.... ....++||+|+++..+.. +.+.+.. .++.+..++|+.....+...+.
T Consensus 51 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 130 (216)
T 3b6e_A 51 IIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV 130 (216)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc
Confidence 34555565555544333222211 235789999999988877 5555543 3778999998765332221111
Q ss_pred HHHcCCCcEEEEeCc-c----cc-------CCCCCCCCEEEE
Q 011104 395 EFKDGLTQVLISTDV-L----AR-------GFDQQQVNLIVN 424 (493)
Q Consensus 395 ~f~~g~~~vLv~T~~-~----~~-------Gldi~~v~~Vi~ 424 (493)
+...|+|+|.- + .. ++.+.++++||.
T Consensus 131 ----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIi 168 (216)
T 3b6e_A 131 ----KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIII 168 (216)
T ss_dssp ----HHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEE
T ss_pred ----cCCCEEEECHHHHHHHHhccCcccccccchhcccEEEE
Confidence 13679999943 2 12 256667778774
No 354
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=69.73 E-value=14 Score=34.48 Aligned_cols=79 Identities=14% Similarity=0.075 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcc--cccCCCCCCCcEEEeCchHHHHHHHcCccCCCC
Q 011104 170 KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSR 247 (493)
Q Consensus 170 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 247 (493)
.+.++||.|+++.-+..+++.++..+ ..+..+++....... .......+..+|+|+|. +-...+++.+
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEG----HEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTT----CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcC----CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCccc
Confidence 45689999999999999988887753 445556655432211 11111233568999995 3345778899
Q ss_pred eeEEEEecchh
Q 011104 248 LKILVYDEADH 258 (493)
Q Consensus 248 ~~~iVlDEah~ 258 (493)
+++||.-....
T Consensus 312 ~~~Vi~~~~p~ 322 (395)
T 3pey_A 312 VSMVVNYDLPT 322 (395)
T ss_dssp EEEEEESSCCB
T ss_pred CCEEEEcCCCC
Confidence 99998765543
No 355
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=69.67 E-value=2.3 Score=36.59 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=14.8
Q ss_pred ccEEEeccCCCchhHH
Q 011104 141 RNLIAQARNGSGKTTC 156 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~ 156 (493)
+-+.+.||+|+|||..
T Consensus 24 ~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTL 39 (218)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 7899999999999985
No 356
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=69.53 E-value=2.2 Score=35.07 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=15.1
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.|+.|||||+..
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 67999999999999864
No 357
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=69.23 E-value=1.9 Score=36.66 Aligned_cols=24 Identities=25% Similarity=0.080 Sum_probs=18.3
Q ss_pred hhhhcCCCCccEEEeccCCCchhHHh
Q 011104 132 LPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 132 i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
++.+-.+ .-+.+.|++|||||+..
T Consensus 15 ~~~~~~~--~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 15 VPRGSKT--FIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCCSCCC--EEEEEEESTTSSHHHHH
T ss_pred cccCCCC--eEEEEECCCCCCHHHHH
Confidence 3444455 77899999999999854
No 358
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=69.22 E-value=5 Score=36.72 Aligned_cols=17 Identities=35% Similarity=0.370 Sum_probs=15.2
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.||+|+|||..+
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 68999999999999864
No 359
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=69.19 E-value=4.1 Score=35.71 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=19.4
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~ 167 (493)
.-+.+.||.|||||+ ++-++..+..
T Consensus 29 e~~~i~G~nGsGKST--Ll~~l~Gl~~ 53 (243)
T 1mv5_A 29 SIIAFAGPSGGGKST--IFSLLERFYQ 53 (243)
T ss_dssp EEEEEECCTTSSHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCCHHH--HHHHHhcCCC
Confidence 789999999999998 4555555543
No 360
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=69.09 E-value=2.1 Score=35.73 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=15.1
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.-+++.|++|||||+..
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 67899999999999874
No 361
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=69.03 E-value=2.6 Score=39.02 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=15.1
Q ss_pred ccEEEeccCCCchhHHhH
Q 011104 141 RNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~ 158 (493)
.-++++||||||||....
T Consensus 8 ~lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCcCcHHHHHH
Confidence 468999999999998643
No 362
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=69.01 E-value=2.4 Score=36.59 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=16.3
Q ss_pred cCCCCccEEEeccCCCchhHHh
Q 011104 136 LTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 136 l~~~~~~viv~a~TGsGKT~~~ 157 (493)
-.| +-+++.||.|+|||+..
T Consensus 14 ~~G--~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 14 AQG--TLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp -CC--CEEEEECCTTSCHHHHH
T ss_pred CCC--cEEEEECCCCCCHHHHH
Confidence 345 78999999999999853
No 363
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=68.85 E-value=23 Score=33.39 Aligned_cols=70 Identities=10% Similarity=0.096 Sum_probs=51.7
Q ss_pred CcEEEEcCChhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCc-c-----ccCCCCCCCC
Q 011104 351 GQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-L-----ARGFDQQQVN 420 (493)
Q Consensus 351 ~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~-----~~Gldi~~v~ 420 (493)
.++||.++++..+..+++.+.. .++.+..++|+.........+ . ....|+|+|.- + ...+++..++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL---E-RGCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHH---T-TCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHh---h-CCCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 5799999999999999888765 468899999998876554332 2 34689999952 1 2235677788
Q ss_pred EEEE
Q 011104 421 LIVN 424 (493)
Q Consensus 421 ~Vi~ 424 (493)
+||.
T Consensus 178 ~iVi 181 (417)
T 2i4i_A 178 YLVL 181 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 364
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=68.72 E-value=4.5 Score=36.06 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=19.7
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~ 167 (493)
.-+.+.||.|||||+ ++-++..+..
T Consensus 38 e~~~liG~nGsGKST--Ll~~l~Gl~~ 62 (266)
T 4g1u_C 38 EMVAIIGPNGAGKST--LLRLLTGYLS 62 (266)
T ss_dssp CEEEEECCTTSCHHH--HHHHHTSSSC
T ss_pred CEEEEECCCCCcHHH--HHHHHhcCCC
Confidence 789999999999998 4556665544
No 365
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=68.71 E-value=2.4 Score=35.78 Aligned_cols=17 Identities=41% Similarity=0.579 Sum_probs=15.3
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.|+.|||||+..
T Consensus 30 ~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 78999999999999863
No 366
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=68.37 E-value=3.4 Score=41.39 Aligned_cols=89 Identities=10% Similarity=0.077 Sum_probs=56.4
Q ss_pred HHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcc--cccCCCCCCCcEEEeCchHHHHHH
Q 011104 161 MLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWM 238 (493)
Q Consensus 161 ~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv~Tp~~l~~~l 238 (493)
+...+.....+.++||.|+++.-+..+++.+..... .++.+..++++...... ..........+|+|+|. +
T Consensus 329 l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~------~ 401 (563)
T 3i5x_A 329 IKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------V 401 (563)
T ss_dssp HHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------G
T ss_pred HHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc------h
Confidence 333333334567899999999999999998887643 24555556665433211 11111224578999995 3
Q ss_pred HcCccCCCCeeEEEEecc
Q 011104 239 SAKKLGFSRLKILVYDEA 256 (493)
Q Consensus 239 ~~~~~~~~~~~~iVlDEa 256 (493)
-...+++.++++||.-..
T Consensus 402 ~~~GiDip~v~~VI~~~~ 419 (563)
T 3i5x_A 402 GARGMDFPNVHEVLQIGV 419 (563)
T ss_dssp GTSSCCCTTCCEEEEESC
T ss_pred hhcCCCcccCCEEEEECC
Confidence 345678888998886543
No 367
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=68.18 E-value=3.3 Score=35.07 Aligned_cols=22 Identities=32% Similarity=0.267 Sum_probs=16.8
Q ss_pred cEEEeccCCCchhHHhHHHHHh
Q 011104 142 NLIAQARNGSGKTTCFVLGMLS 163 (493)
Q Consensus 142 ~viv~a~TGsGKT~~~~~~~l~ 163 (493)
-.++.|+.|||||+.+..-++.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999975444433
No 368
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=67.93 E-value=2.4 Score=34.54 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=16.1
Q ss_pred ccEEEeccCCCchhHHhHH
Q 011104 141 RNLIAQARNGSGKTTCFVL 159 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~ 159 (493)
+++++.|..|||||++.-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 6899999999999987533
No 369
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=67.07 E-value=4.3 Score=36.03 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=19.6
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~ 167 (493)
.-+.+.||.|||||+ ++-++..+..
T Consensus 47 e~~~i~G~nGsGKST--Ll~~l~Gl~~ 71 (260)
T 2ghi_A 47 TTCALVGHTGSGKST--IAKLLYRFYD 71 (260)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCCHHH--HHHHHhccCC
Confidence 789999999999998 4555655543
No 370
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=66.96 E-value=2.5 Score=35.76 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=15.1
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.-+++.|+.|||||+..
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57999999999999864
No 371
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=66.91 E-value=7 Score=42.72 Aligned_cols=66 Identities=17% Similarity=0.128 Sum_probs=49.5
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEe-----CccccCCC-CCCCCE
Q 011104 348 EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLIST-----DVLARGFD-QQQVNL 421 (493)
Q Consensus 348 ~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T-----~~~~~Gld-i~~v~~ 421 (493)
..++++||.++++.-+...+..|......+..++|+.+ .++...|+|+| +.+.++-. +.++.+
T Consensus 225 ~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~l 293 (1108)
T 3l9o_A 225 KNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAW 293 (1108)
T ss_dssp HTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEE
T ss_pred hcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCE
Confidence 44678999999999999999999887668999999886 24567899999 33333322 455666
Q ss_pred EEE
Q 011104 422 IVN 424 (493)
Q Consensus 422 Vi~ 424 (493)
||.
T Consensus 294 VVI 296 (1108)
T 3l9o_A 294 VIF 296 (1108)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 372
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=66.76 E-value=8.7 Score=28.44 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=34.0
Q ss_pred cccCCcEEEEcCChhhHHHHHHHHHhCCC-cEEEecCCCCH
Q 011104 347 GEKMGQTIIFVRTKNSASALHKALKDFGY-EVTTIMGATIQ 386 (493)
Q Consensus 347 ~~~~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~l~~~~~~ 386 (493)
..+..+++|||.+-..+...+..|...|+ ++..+.|++..
T Consensus 55 l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 55 NDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp SCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred cCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 34568899999998899999999999999 48899998743
No 373
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=66.75 E-value=7.7 Score=30.57 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=33.3
Q ss_pred cccCCcEEEEcCChhhHHHHHHHHHhCCCc-EEEecCCCC
Q 011104 347 GEKMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATI 385 (493)
Q Consensus 347 ~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~ 385 (493)
..+..+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 53 l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 53 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp SCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 445678999999988999999999999994 889999864
No 374
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=66.57 E-value=2.8 Score=35.34 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=15.4
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.-+++.|+.|||||+..
T Consensus 5 ~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 78999999999999964
No 375
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=66.39 E-value=3.8 Score=36.76 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=19.5
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~ 167 (493)
.-+.+.||.|||||+ ++-++..+..
T Consensus 35 e~~~iiGpnGsGKST--Ll~~l~Gl~~ 59 (275)
T 3gfo_A 35 EVTAILGGNGVGKST--LFQNFNGILK 59 (275)
T ss_dssp SEEEEECCTTSSHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCCHHH--HHHHHHcCCC
Confidence 789999999999998 4555655543
No 376
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=66.31 E-value=3.1 Score=36.76 Aligned_cols=21 Identities=38% Similarity=0.354 Sum_probs=17.7
Q ss_pred hcCCCCccEEEeccCCCchhHHh
Q 011104 135 ILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 135 il~~~~~~viv~a~TGsGKT~~~ 157 (493)
.+.| ..+++.|++|||||+..
T Consensus 45 ~l~g--~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 45 YLNG--RSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HHTT--CCEEEECSTTSCHHHHH
T ss_pred hcCC--CEEEEECCCCCCHHHHH
Confidence 3457 89999999999999864
No 377
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=66.28 E-value=4.9 Score=31.13 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=33.9
Q ss_pred cccCCcEEEEcCChhhHHHHHHHHHhCCCc-EEEecCCCCH
Q 011104 347 GEKMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATIQ 386 (493)
Q Consensus 347 ~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~~ 386 (493)
..+..+++|||.+-..+...+..|...|+. +..+.|++..
T Consensus 79 l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 79 FGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 119 (129)
T ss_dssp CCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHH
T ss_pred CCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 345678999999988899999999999984 8899999743
No 378
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=66.22 E-value=2.7 Score=35.63 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=15.2
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.-+++.|+.|||||+..
T Consensus 5 ~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 67999999999999864
No 379
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=66.05 E-value=12 Score=40.18 Aligned_cols=95 Identities=15% Similarity=0.169 Sum_probs=57.6
Q ss_pred EEeCCChHHHHHHHHHHHHHhccc-----CCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHH
Q 011104 326 KVYCPDELAKVMVIRDRIFELGEK-----MGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEF 396 (493)
Q Consensus 326 ~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f 396 (493)
.+..+....|.......+...... .+++||.++++..+...+..++.. ++.+..+||+.+...+...+.
T Consensus 267 ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~-- 344 (936)
T 4a2w_A 267 LICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI-- 344 (936)
T ss_dssp EEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH--
T ss_pred EEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc--
Confidence 344555555555444334443332 678999999999998888777654 899999999986654432221
Q ss_pred HcCCCcEEEEeCc-c----ccC-C-CCCCCCEEEE
Q 011104 397 KDGLTQVLISTDV-L----ARG-F-DQQQVNLIVN 424 (493)
Q Consensus 397 ~~g~~~vLv~T~~-~----~~G-l-di~~v~~Vi~ 424 (493)
+...|+|+|.- + ..+ + .+.++++||.
T Consensus 345 --~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liVi 377 (936)
T 4a2w_A 345 --EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (936)
T ss_dssp --HHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred --cCCCEEEecHHHHHHHHHcCccccccCCCEEEE
Confidence 13679999932 2 122 2 4566788775
No 380
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=66.05 E-value=2.7 Score=39.69 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=15.3
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.||+|+|||..+
T Consensus 73 ~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEECCCCCCHHHHH
Confidence 68999999999999864
No 381
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=65.88 E-value=28 Score=31.51 Aligned_cols=91 Identities=13% Similarity=0.175 Sum_probs=59.6
Q ss_pred EEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 011104 326 KVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLT 401 (493)
Q Consensus 326 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~~ 401 (493)
.+..+....|.......+.. ...++||.++++.-+..+++.+... +..+..++|+.+.......+ . ..
T Consensus 35 lv~~~TGsGKT~~~~~~~~~---~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~ 106 (337)
T 2z0m_A 35 VVRAKTGSGKTAAYAIPILE---LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV---R--NA 106 (337)
T ss_dssp EEECCTTSSHHHHHHHHHHH---HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH---T--TC
T ss_pred EEEcCCCCcHHHHHHHHHHh---hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc---C--CC
Confidence 34445555554433322222 2678999999999999998888753 57899999998876554332 2 36
Q ss_pred cEEEEeCc-c-----ccCCCCCCCCEEEE
Q 011104 402 QVLISTDV-L-----ARGFDQQQVNLIVN 424 (493)
Q Consensus 402 ~vLv~T~~-~-----~~Gldi~~v~~Vi~ 424 (493)
.|+|+|.- + ...+++..+++||.
T Consensus 107 ~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 135 (337)
T 2z0m_A 107 DIVVATPGRLLDLWSKGVIDLSSFEIVII 135 (337)
T ss_dssp SEEEECHHHHHHHHHTTSCCGGGCSEEEE
T ss_pred CEEEECHHHHHHHHHcCCcchhhCcEEEE
Confidence 89999942 1 12345667777774
No 382
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=65.77 E-value=3.3 Score=40.48 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=16.2
Q ss_pred CccEEEeccCCCchhHHhH
Q 011104 140 YRNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 140 ~~~viv~a~TGsGKT~~~~ 158 (493)
..++++.||+|+|||...-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3689999999999998743
No 383
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=65.71 E-value=3.1 Score=39.47 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=14.8
Q ss_pred ccEEEeccCCCchhHHhH
Q 011104 141 RNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~ 158 (493)
.-++|.||||||||..+.
T Consensus 3 ~~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEEECSSSSHHHHHH
T ss_pred cEEEEECcchhhHHHHHH
Confidence 457899999999998643
No 384
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=65.66 E-value=2.7 Score=39.37 Aligned_cols=54 Identities=13% Similarity=0.046 Sum_probs=30.4
Q ss_pred CCCcccCCCCHHHHHHHHhhCCCCCCchHHHh-hhhhhcCCCCccEEEeccCCCchhHHh
Q 011104 99 ATTFEDLNLSPELLKGLYVEMKFQKPSKIQAI-SLPMILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~-~i~~il~~~~~~viv~a~TGsGKT~~~ 157 (493)
..+|+++.=.....+.+..... .|.... .+..+. ...+.+++.||+|+|||+.+
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~----~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVV----WPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH----HHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH----HHhhChHhHhhcc-CCCceEEEECCCCCCHHHHH
Confidence 4567777666666666654211 011000 000011 12378999999999999864
No 385
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=65.65 E-value=4.3 Score=34.82 Aligned_cols=24 Identities=33% Similarity=0.272 Sum_probs=18.5
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~ 166 (493)
.-+.+.||.|||||+. +-++..+.
T Consensus 36 e~~~iiG~NGsGKSTL--lk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTL--LKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHH--HHHHTTSS
T ss_pred CEEEEECCCCCCHHHH--HHHHhcCC
Confidence 7899999999999984 44555543
No 386
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=65.63 E-value=4.7 Score=36.70 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=22.2
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEc
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 178 (493)
.-+.+.|++|+|||+.. ..+..+... .+.++++..
T Consensus 101 ~vi~lvG~nGsGKTTll--~~Lag~l~~-~~g~V~l~g 135 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL--GKLAHRLKN-EGTKVLMAA 135 (302)
T ss_dssp EEEEEECCTTSCHHHHH--HHHHHHHHH-TTCCEEEEC
T ss_pred cEEEEEcCCCCCHHHHH--HHHHHHHHH-cCCeEEEEe
Confidence 78899999999999853 333333221 234566554
No 387
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=65.49 E-value=2.5 Score=35.22 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=15.1
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.-+++.|+.|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 67899999999999864
No 388
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=65.38 E-value=2.7 Score=38.04 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=15.1
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.-++++|++|||||+..
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 67999999999999864
No 389
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=65.21 E-value=25 Score=26.00 Aligned_cols=46 Identities=9% Similarity=0.128 Sum_probs=35.0
Q ss_pred CCcEEEEcC------ChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHH
Q 011104 350 MGQTIIFVR------TKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKE 395 (493)
Q Consensus 350 ~~~~lVf~~------s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~ 395 (493)
..+++||.. ..-.|.++..+|...++....++=......+..+.+.
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~ 68 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEY 68 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH
Confidence 678999998 4999999999999999887766554455555555443
No 390
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=65.20 E-value=2.7 Score=38.33 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=15.0
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 47999999999999864
No 391
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=64.97 E-value=5 Score=35.31 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=19.2
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~ 167 (493)
.-+.+.||.|||||+ ++-++..+..
T Consensus 27 e~~~liG~NGsGKST--Llk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKST--LLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHH--HHHHHTTSSC
T ss_pred CEEEEECCCCCcHHH--HHHHHhCCCC
Confidence 788999999999998 4555555543
No 392
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=64.95 E-value=3.1 Score=34.18 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=14.6
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+.+++.|+.|||||...
T Consensus 5 ~~i~i~G~~GsGKsTla 21 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 35899999999999864
No 393
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=64.94 E-value=4.2 Score=35.76 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=19.0
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~ 166 (493)
.-+.+.||.|||||+ ++-++..+.
T Consensus 36 e~~~i~G~nGsGKST--Ll~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKST--LTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTSS
T ss_pred CEEEEECCCCCCHHH--HHHHHhcCC
Confidence 789999999999998 455555554
No 394
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=64.91 E-value=16 Score=25.44 Aligned_cols=37 Identities=16% Similarity=0.368 Sum_probs=30.0
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHHhCCCc-EEEecCCCC
Q 011104 348 EKMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATI 385 (493)
Q Consensus 348 ~~~~~~lVf~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~ 385 (493)
.+..+++|||.+-..+...+..|...|+. +..+ |++.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 44678999999988899999999999985 6666 7653
No 395
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=64.84 E-value=3 Score=34.86 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=15.4
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.|++|||||+..
T Consensus 10 ~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 78999999999999864
No 396
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=64.83 E-value=16 Score=28.37 Aligned_cols=38 Identities=8% Similarity=0.072 Sum_probs=32.9
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHHhCCC-cEEEecCCCC
Q 011104 348 EKMGQTIIFVRTKNSASALHKALKDFGY-EVTTIMGATI 385 (493)
Q Consensus 348 ~~~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~l~~~~~ 385 (493)
.+..+++|||.+-..+...+..|...|+ ++..+.|++.
T Consensus 72 ~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 72 PENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 4467899999998888999999999999 5889999983
No 397
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=64.71 E-value=10 Score=38.90 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=46.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeE
Q 011104 171 APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKI 250 (493)
Q Consensus 171 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 250 (493)
+.++||+||++.-+..+++.++.. ++.+..+++. ..............+|+|+|. +-...+++. +++
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~--eR~~v~~~F~~g~~~VLVaTd------v~e~GIDip-v~~ 476 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK--SYDTEYPKCKNGDWDFVITTD------ISEMGANFG-ASR 476 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS--SHHHHGGGGGTCCCSEEEECG------GGGTTCCCC-CSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH--HHHHHHHHHHCCCceEEEECc------hhhcceeeC-CcE
Confidence 568999999999999888887765 4566666663 222233334455789999994 333456677 776
Q ss_pred EE
Q 011104 251 LV 252 (493)
Q Consensus 251 iV 252 (493)
||
T Consensus 477 VI 478 (673)
T 2wv9_A 477 VI 478 (673)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 398
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=64.58 E-value=4.2 Score=37.07 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=22.1
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEc
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 178 (493)
.-+.+.||+|||||+.. ..+..+... .+.++++..
T Consensus 103 ~vi~lvG~nGsGKTTll--~~Lagll~~-~~g~V~l~g 137 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI--AKLGRYYQN-LGKKVMFCA 137 (304)
T ss_dssp SEEEEECSTTSSHHHHH--HHHHHHHHT-TTCCEEEEC
T ss_pred eEEEEECCCCCcHHHHH--HHHHHHHHh-cCCEEEEEe
Confidence 78889999999999853 333333322 234555554
No 399
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=64.54 E-value=3.1 Score=35.39 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=14.5
Q ss_pred ccEEEeccCCCchhHH
Q 011104 141 RNLIAQARNGSGKTTC 156 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~ 156 (493)
.-+.+.|++|||||+.
T Consensus 23 ~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTL 38 (208)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 7889999999999985
No 400
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=64.51 E-value=22 Score=37.03 Aligned_cols=69 Identities=7% Similarity=-0.029 Sum_probs=50.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHH----hCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCcc------ccC------
Q 011104 350 MGQTIIFVRTKNSASALHKALK----DFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVL------ARG------ 413 (493)
Q Consensus 350 ~~~~lVf~~s~~~~~~l~~~L~----~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~------~~G------ 413 (493)
+..++|.++|+.-|.+.++.+. ..|+.+.++.|+++...|.... ...|+|+|+.- ..+
T Consensus 115 g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~~~ 188 (853)
T 2fsf_A 115 GKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFSPE 188 (853)
T ss_dssp SSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSGG
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhccHh
Confidence 5689999999999988877665 4589999999999976554433 26899999531 222
Q ss_pred -CCCCCCCEEEE
Q 011104 414 -FDQQQVNLIVN 424 (493)
Q Consensus 414 -ldi~~v~~Vi~ 424 (493)
+...++.++|.
T Consensus 189 ~~~~~~l~~lVl 200 (853)
T 2fsf_A 189 ERVQRKLHYALV 200 (853)
T ss_dssp GCCCCSCCEEEE
T ss_pred HhcccCCcEEEE
Confidence 45567777664
No 401
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=64.49 E-value=3.1 Score=34.50 Aligned_cols=15 Identities=40% Similarity=0.572 Sum_probs=13.3
Q ss_pred cEEEeccCCCchhHH
Q 011104 142 NLIAQARNGSGKTTC 156 (493)
Q Consensus 142 ~viv~a~TGsGKT~~ 156 (493)
.+.+.||.|+|||+.
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999985
No 402
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=64.46 E-value=2.5 Score=35.25 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=14.5
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.-+++.|++|||||+..
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 56789999999999854
No 403
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=64.44 E-value=3.5 Score=37.63 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=19.5
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDP 167 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~ 167 (493)
.-+.+.||+|||||+. +-++..+..
T Consensus 81 e~vaivG~sGsGKSTL--l~ll~gl~~ 105 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTI--LRLLFRFYD 105 (306)
T ss_dssp CEEEEESSSCHHHHHH--HHHHTTSSC
T ss_pred CEEEEECCCCchHHHH--HHHHHcCCC
Confidence 8899999999999984 455555543
No 404
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=64.30 E-value=4.1 Score=35.19 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=18.7
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~ 166 (493)
.-+.+.||.|||||+ ++-++..+.
T Consensus 31 e~~~iiG~nGsGKST--Ll~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKST--LLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHH--HHHHHTTSS
T ss_pred CEEEEECCCCCCHHH--HHHHHhcCC
Confidence 788999999999998 455555554
No 405
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=64.30 E-value=3.2 Score=35.07 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=15.2
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.-+.+.|+.|||||+..
T Consensus 26 ~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 78999999999999863
No 406
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=64.12 E-value=3 Score=35.63 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=14.3
Q ss_pred cEEEeccCCCchhHHhH
Q 011104 142 NLIAQARNGSGKTTCFV 158 (493)
Q Consensus 142 ~viv~a~TGsGKT~~~~ 158 (493)
.+++.|+.|||||+..-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998743
No 407
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=64.11 E-value=4 Score=35.66 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.3
Q ss_pred ccEEEeccCCCchhHHhHH
Q 011104 141 RNLIAQARNGSGKTTCFVL 159 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~ 159 (493)
.-+.+.||+|||||+....
T Consensus 31 ~~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHH
Confidence 8899999999999986443
No 408
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=64.02 E-value=4.3 Score=31.20 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=32.7
Q ss_pred ccCCcEEEEcCChhh--HHHHHHHHHhCCCcEEEecCCCC
Q 011104 348 EKMGQTIIFVRTKNS--ASALHKALKDFGYEVTTIMGATI 385 (493)
Q Consensus 348 ~~~~~~lVf~~s~~~--~~~l~~~L~~~~~~~~~l~~~~~ 385 (493)
.+..+++|||.+-.. +..++..|...|+++..+.|++.
T Consensus 69 ~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 69 DPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp CTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 346789999999877 88999999999999999999874
No 409
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=64.02 E-value=2.1 Score=44.33 Aligned_cols=70 Identities=26% Similarity=0.338 Sum_probs=47.2
Q ss_pred CcEEEEcCChhhHHHH-HHHHHhCC---CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeC-ccc-----------cCC
Q 011104 351 GQTIIFVRTKNSASAL-HKALKDFG---YEVTTIMGATIQEERDKIVKEFKDGLTQVLISTD-VLA-----------RGF 414 (493)
Q Consensus 351 ~~~lVf~~s~~~~~~l-~~~L~~~~---~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~-----------~Gl 414 (493)
+++||.++++.-+... .+.|+... +.+..++|+.+...+...+. +...|+|+|. .+. ..+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 7899999999998888 88777653 89999999986554333322 4578999994 222 234
Q ss_pred CCCCCCEEEE
Q 011104 415 DQQQVNLIVN 424 (493)
Q Consensus 415 di~~v~~Vi~ 424 (493)
.+.++++||.
T Consensus 133 ~~~~~~lvVi 142 (699)
T 4gl2_A 133 QLSDFSLIII 142 (699)
T ss_dssp CGGGCSEEEE
T ss_pred ecccCcEEEE
Confidence 6677888775
No 410
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=63.93 E-value=4.6 Score=35.05 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=18.7
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~ 166 (493)
.-+.+.||.|||||+ ++-++..+.
T Consensus 35 e~~~i~G~nGsGKST--Ll~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTS--LLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CEEEEECCCCCCHHH--HHHHHhCCC
Confidence 789999999999998 444555543
No 411
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=63.79 E-value=2.9 Score=34.84 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=14.0
Q ss_pred cEEEeccCCCchhHHh
Q 011104 142 NLIAQARNGSGKTTCF 157 (493)
Q Consensus 142 ~viv~a~TGsGKT~~~ 157 (493)
.+++.|+.|||||+..
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999864
No 412
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=63.61 E-value=6.2 Score=30.95 Aligned_cols=38 Identities=18% Similarity=0.409 Sum_probs=33.6
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHHhCCC-cEEEecCCCC
Q 011104 348 EKMGQTIIFVRTKNSASALHKALKDFGY-EVTTIMGATI 385 (493)
Q Consensus 348 ~~~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~l~~~~~ 385 (493)
.+..+++|||.+-..+...+..|...|+ ++..+.|++.
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 4567899999999899999999999999 6999999974
No 413
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=63.60 E-value=3.5 Score=34.82 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=14.9
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.-+++.|+.|||||+..
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 56899999999999864
No 414
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=63.59 E-value=4.3 Score=35.42 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=18.1
Q ss_pred ccEEEeccCCCchhHHhHHHHHhcc
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRV 165 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l 165 (493)
.-+.+.||.|||||+ ++-++..+
T Consensus 32 e~~~i~G~nGsGKST--Ll~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSS--LLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTC
T ss_pred CEEEEECCCCCCHHH--HHHHHhcC
Confidence 789999999999998 44445444
No 415
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=63.58 E-value=3.4 Score=33.71 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=14.8
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+.+++.|+.|||||.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999864
No 416
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=63.50 E-value=2.4 Score=36.76 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=11.1
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.-+.+.||+|||||+..
T Consensus 28 ~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CEEEEECSCC----CHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 78999999999999853
No 417
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=63.50 E-value=4 Score=34.77 Aligned_cols=21 Identities=19% Similarity=0.063 Sum_probs=17.0
Q ss_pred hcCCCCccEEEeccCCCchhHHh
Q 011104 135 ILTPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 135 il~~~~~~viv~a~TGsGKT~~~ 157 (493)
+..| ..+++.|++|||||+..
T Consensus 22 ~~~~--~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 22 NQRG--LTIWLTGLSASGKSTLA 42 (211)
T ss_dssp TSSC--EEEEEECSTTSSHHHHH
T ss_pred CCCC--CEEEEECCCCCCHHHHH
Confidence 3445 78999999999999864
No 418
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=63.49 E-value=3.3 Score=33.13 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=13.8
Q ss_pred ccEEEeccCCCchhHH
Q 011104 141 RNLIAQARNGSGKTTC 156 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~ 156 (493)
.-.++.||+|+|||..
T Consensus 24 g~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4578899999999986
No 419
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=63.46 E-value=4.6 Score=35.74 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=18.8
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~ 166 (493)
.-+.+.||.|||||+ ++-++..+.
T Consensus 34 e~~~liG~nGsGKST--Llk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKST--LINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTSS
T ss_pred CEEEEECCCCCCHHH--HHHHHhCCC
Confidence 789999999999998 455555554
No 420
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=63.44 E-value=29 Score=38.77 Aligned_cols=129 Identities=21% Similarity=0.218 Sum_probs=0.0
Q ss_pred hcCCCCccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEE--------------------------------------
Q 011104 135 ILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALC-------------------------------------- 176 (493)
Q Consensus 135 il~~~~~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~li-------------------------------------- 176 (493)
+-.| +-+.++|++|||||. ++-++.++.....| .+.|
T Consensus 441 i~~G--~~vaivG~sGsGKST--ll~ll~~~~~~~~G-~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g 515 (1321)
T 4f4c_A 441 VNAG--QTVALVGSSGCGKST--IISLLLRYYDVLKG-KITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLG 515 (1321)
T ss_dssp ECTT--CEEEEEECSSSCHHH--HHHHHTTSSCCSEE-EEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTT
T ss_pred ecCC--cEEEEEecCCCcHHH--HHHHhccccccccC-cccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhh
Q ss_pred -EcCCHHHHHHHHHHH--HHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeEEEE
Q 011104 177 -ICPTRELAIQNLEVL--RKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVY 253 (493)
Q Consensus 177 -l~Pt~~La~q~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~iVl 253 (493)
--.+.+-..+..+.+ ..+...++-.....+|..+.+. +-|.-.++--...+ +++-+++||
T Consensus 516 ~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~L----------------SGGQkQRiaiARAl-~~~~~IliL 578 (1321)
T 4f4c_A 516 KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQL----------------SGGQKQRIAIARAL-VRNPKILLL 578 (1321)
T ss_dssp CTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCC----------------CHHHHHHHHHHHHH-TTCCSEEEE
T ss_pred cccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCC----------------CHHHHHHHHHHHHH-ccCCCEEEE
Q ss_pred ecchhhhcccCCHHHHHHHHHHhhhcCCCeeEEEEe
Q 011104 254 DEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFS 289 (493)
Q Consensus 254 DEah~l~~~~~~~~~~~~i~~~~~~~~~~~q~v~~S 289 (493)
||+=.-++ ..-+..+...+..+.+ ++-+++.+
T Consensus 579 DE~tSaLD-~~te~~i~~~l~~~~~---~~T~iiia 610 (1321)
T 4f4c_A 579 DEATSALD-AESEGIVQQALDKAAK---GRTTIIIA 610 (1321)
T ss_dssp ESTTTTSC-TTTHHHHHHHHHHHHT---TSEEEEEC
T ss_pred ecccccCC-HHHHHHHHHHHHHHhC---CCEEEEEc
No 421
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=63.43 E-value=29 Score=36.25 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=51.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCc-c-----c-------c
Q 011104 350 MGQTIIFVRTKNSASALHKALKD----FGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-L-----A-------R 412 (493)
Q Consensus 350 ~~~~lVf~~s~~~~~~l~~~L~~----~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-~-----~-------~ 412 (493)
+..++|.++|+.-|.+.++.+.. .|+.+.++.|+++...|.... ...|+++|+- + . .
T Consensus 124 g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~~ 197 (844)
T 1tf5_A 124 GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYKE 197 (844)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSGG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcchh
Confidence 56899999999999988877654 599999999999987665442 2689999952 2 1 2
Q ss_pred CCCCCCCCEEEE
Q 011104 413 GFDQQQVNLIVN 424 (493)
Q Consensus 413 Gldi~~v~~Vi~ 424 (493)
.++...+.++|.
T Consensus 198 ~l~lr~~~~lVl 209 (844)
T 1tf5_A 198 QMVQRPLHFAVI 209 (844)
T ss_dssp GCCCCCCCEEEE
T ss_pred hhcccCCCEEEE
Confidence 356677887664
No 422
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=63.35 E-value=5 Score=37.52 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=25.2
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 179 (493)
+-+++.|++|+|||..++..+..... .+..++++..
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~ 99 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDA 99 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEES
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeC
Confidence 78999999999999876554433321 2346777765
No 423
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=63.18 E-value=4.8 Score=35.22 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=18.9
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~ 166 (493)
.-+.+.||.|||||+ ++-++..+.
T Consensus 33 e~~~l~G~nGsGKST--Ll~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTT--TLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTSS
T ss_pred CEEEEECCCCCCHHH--HHHHHhCCC
Confidence 789999999999998 455555554
No 424
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=63.14 E-value=4.4 Score=34.80 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=15.7
Q ss_pred ccEEEeccCCCchhHHhHH
Q 011104 141 RNLIAQARNGSGKTTCFVL 159 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~ 159 (493)
+-+++.||+||||++.+-.
T Consensus 30 kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp EEEEEECCTTCCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 6788999999999886533
No 425
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=63.12 E-value=5.1 Score=38.75 Aligned_cols=36 Identities=17% Similarity=0.025 Sum_probs=25.3
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 179 (493)
.-+++.|++|+|||...+--+.+.... +..+++++-
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSl 233 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSL 233 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECS
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEEC
Confidence 679999999999998755544443322 456777763
No 426
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=63.05 E-value=5.2 Score=34.53 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=16.8
Q ss_pred ccEEEeccCCCchhHHhHHHH
Q 011104 141 RNLIAQARNGSGKTTCFVLGM 161 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~ 161 (493)
-++++.++.|+|||...+--+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHH
Confidence 469999999999999854433
No 427
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=62.90 E-value=3 Score=36.06 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=15.2
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.|++|||||+..
T Consensus 8 ~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 67999999999999864
No 428
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=62.72 E-value=4.9 Score=35.72 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=18.8
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~ 166 (493)
.-+.+.||.|||||+ ++-++..+.
T Consensus 33 e~~~liG~nGsGKST--Llk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKST--FLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CEEEEECCCCCCHHH--HHHHHhcCC
Confidence 788999999999998 455555554
No 429
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=62.68 E-value=3.7 Score=33.95 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=14.9
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.|++|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999864
No 430
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=62.68 E-value=3.7 Score=35.65 Aligned_cols=18 Identities=22% Similarity=0.160 Sum_probs=15.7
Q ss_pred ccEEEeccCCCchhHHhH
Q 011104 141 RNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~ 158 (493)
..+++.|++|||||...-
T Consensus 17 ~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 679999999999998643
No 431
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=62.68 E-value=3.3 Score=35.38 Aligned_cols=17 Identities=35% Similarity=0.305 Sum_probs=14.4
Q ss_pred cEEEeccCCCchhHHhH
Q 011104 142 NLIAQARNGSGKTTCFV 158 (493)
Q Consensus 142 ~viv~a~TGsGKT~~~~ 158 (493)
.+++.|+.|||||+..-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998753
No 432
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=62.63 E-value=3.7 Score=35.21 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=15.6
Q ss_pred ccEEEeccCCCchhHHhH
Q 011104 141 RNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~ 158 (493)
..+++.|++|||||+..-
T Consensus 5 ~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 679999999999998643
No 433
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=62.57 E-value=27 Score=26.04 Aligned_cols=45 Identities=9% Similarity=0.120 Sum_probs=34.7
Q ss_pred CCcEEEEc------CChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHH
Q 011104 350 MGQTIIFV------RTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVK 394 (493)
Q Consensus 350 ~~~~lVf~------~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~ 394 (493)
..+++||. ++...|..+..+|...|+....+.=...+..+..+.+
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~ 65 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA 65 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH
Confidence 67899998 5788999999999999988776655555555555544
No 434
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=62.46 E-value=6.2 Score=31.28 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=32.3
Q ss_pred cCCcEEEEcCCh--hhHHHHHHHHHhCCCcEEEecCCCC
Q 011104 349 KMGQTIIFVRTK--NSASALHKALKDFGYEVTTIMGATI 385 (493)
Q Consensus 349 ~~~~~lVf~~s~--~~~~~l~~~L~~~~~~~~~l~~~~~ 385 (493)
+..+++|||.+- ..+..++..|...|+++..+.|++.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 457899999987 5788999999999999999999874
No 435
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=62.39 E-value=2.8 Score=38.98 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=15.0
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.||+|+|||..+
T Consensus 46 ~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCEEEECCGGGCTTHHH
T ss_pred ceEEEECCCCccHHHHH
Confidence 56999999999999864
No 436
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=62.35 E-value=5 Score=35.66 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=18.9
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~ 166 (493)
.-+.+.||.|||||+ ++-++..+.
T Consensus 51 ei~~liG~NGsGKST--Llk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKST--FLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CEEEEEcCCCCcHHH--HHHHHHcCC
Confidence 788999999999998 455555554
No 437
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=62.34 E-value=4.4 Score=34.49 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=14.7
Q ss_pred cEEEeccCCCchhHHhHH
Q 011104 142 NLIAQARNGSGKTTCFVL 159 (493)
Q Consensus 142 ~viv~a~TGsGKT~~~~~ 159 (493)
.+++.||+||||++.+-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987543
No 438
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=62.23 E-value=5.1 Score=35.46 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=18.8
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~ 166 (493)
.-+.+.||.|||||+ ++-++..+.
T Consensus 42 ei~~l~G~NGsGKST--Llk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTT--TLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred cEEEEECCCCCCHHH--HHHHHhcCC
Confidence 789999999999998 445555553
No 439
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=61.90 E-value=5.2 Score=35.78 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=19.0
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~ 166 (493)
.-+.+.||.|||||+ ++-++..+.
T Consensus 46 e~~~i~G~nGsGKST--Llk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKST--VAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTSS
T ss_pred CEEEEECCCCCCHHH--HHHHHhcCC
Confidence 789999999999998 455565554
No 440
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=61.71 E-value=3.3 Score=34.45 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=14.9
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.|++|||||++.
T Consensus 7 ~~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999999864
No 441
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=61.64 E-value=3.3 Score=34.71 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=15.2
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.-+++.|++|||||+..
T Consensus 13 ~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 67999999999999864
No 442
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=61.38 E-value=3.9 Score=33.69 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=15.0
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.|+.|||||+..
T Consensus 6 ~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 67899999999999863
No 443
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=61.28 E-value=5.4 Score=35.54 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=18.8
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~ 166 (493)
.-+.+.||.|||||+ ++-++..+.
T Consensus 34 e~~~liG~nGsGKST--Ll~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKST--LLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHH--HHHHHTTSS
T ss_pred CEEEEECCCCCcHHH--HHHHHhCCC
Confidence 788999999999998 445555554
No 444
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=61.23 E-value=3.5 Score=38.80 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=14.3
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.-.++.||+|||||..+
T Consensus 24 g~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35779999999999864
No 445
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=61.17 E-value=6.5 Score=36.64 Aligned_cols=23 Identities=22% Similarity=-0.042 Sum_probs=17.9
Q ss_pred CccEEEeccCCCchhHHhHHHHH
Q 011104 140 YRNLIAQARNGSGKTTCFVLGML 162 (493)
Q Consensus 140 ~~~viv~a~TGsGKT~~~~~~~l 162 (493)
+.-+.+.|++|||||......+.
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999987554333
No 446
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=61.03 E-value=12 Score=27.85 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=32.8
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCC
Q 011104 348 EKMGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATI 385 (493)
Q Consensus 348 ~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~ 385 (493)
.+..+++|||.+-..+...+..|...|+....+.|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 45678999999999999999999999986688889874
No 447
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=60.80 E-value=3.9 Score=33.17 Aligned_cols=16 Identities=25% Similarity=0.069 Sum_probs=13.9
Q ss_pred cEEEeccCCCchhHHh
Q 011104 142 NLIAQARNGSGKTTCF 157 (493)
Q Consensus 142 ~viv~a~TGsGKT~~~ 157 (493)
.+++.|+.|||||.+.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999864
No 448
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=60.79 E-value=27 Score=30.14 Aligned_cols=66 Identities=30% Similarity=0.272 Sum_probs=47.6
Q ss_pred EeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCc-EEEecCCCCHHHHHHHHHHHHcCCCcEEE
Q 011104 327 VYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATIQEERDKIVKEFKDGLTQVLI 405 (493)
Q Consensus 327 ~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~~~~r~~~~~~f~~g~~~vLv 405 (493)
+..+....|.......+... ..++||++++...+..+.+.+...++. +..++|+.. ....|+|
T Consensus 113 l~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v 176 (237)
T 2fz4_A 113 IVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTV 176 (237)
T ss_dssp EEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEE
T ss_pred EEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEE
Confidence 34445555555444333332 578999999999999999999888888 899998764 2467888
Q ss_pred EeC
Q 011104 406 STD 408 (493)
Q Consensus 406 ~T~ 408 (493)
+|.
T Consensus 177 ~T~ 179 (237)
T 2fz4_A 177 STY 179 (237)
T ss_dssp EEH
T ss_pred EeH
Confidence 883
No 449
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=60.71 E-value=4.8 Score=37.25 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=14.9
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999853
No 450
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=60.66 E-value=6.4 Score=36.80 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=22.1
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEc
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCIC 178 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 178 (493)
.-+.+.|++|+|||+.. ..+..+... .+.++++..
T Consensus 158 ~vi~lvG~nGsGKTTll--~~Lag~l~~-~~G~V~l~g 192 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL--GKLAHRLKN-EGTKVLMAA 192 (359)
T ss_dssp EEEEEECCTTSCHHHHH--HHHHHHHHH-TTCCEEEEC
T ss_pred eEEEEEcCCCChHHHHH--HHHHhhccc-cCCEEEEec
Confidence 78899999999999853 333333221 234555554
No 451
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=60.65 E-value=21 Score=34.58 Aligned_cols=69 Identities=13% Similarity=0.059 Sum_probs=44.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcccccCCCCCCCcEEEeCchHHHHHHHcCccCCCCeeE
Q 011104 171 APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKI 250 (493)
Q Consensus 171 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 250 (493)
+.++||.||++.-+..+++.++.. ++.+..+++.. ..........+..+|+|+|. +-...+++.. ++
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~--R~~~~~~f~~g~~~iLVaT~------v~~~GiDip~-~~ 256 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKS--YDTEYPKCKNGDWDFVITTD------ISEMGANFGA-SR 256 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTC--CCCCGGGSSSCCCSEEEESS------CC---CCCSC-SE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHH--HHHHHhhccCCCceEEEECC------hHHhCeecCC-CE
Confidence 457999999999999999888876 34555555532 22233334455789999994 2233556666 55
Q ss_pred EE
Q 011104 251 LV 252 (493)
Q Consensus 251 iV 252 (493)
||
T Consensus 257 VI 258 (459)
T 2z83_A 257 VI 258 (459)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 452
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=60.64 E-value=15 Score=37.78 Aligned_cols=70 Identities=21% Similarity=0.367 Sum_probs=49.7
Q ss_pred CcEEEEcCChhhHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCc-----cccC-C-CCCCC
Q 011104 351 GQTIIFVRTKNSASALHKALKDF----GYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV-----LARG-F-DQQQV 419 (493)
Q Consensus 351 ~~~lVf~~s~~~~~~l~~~L~~~----~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~~~G-l-di~~v 419 (493)
+++||.++++..+......+.+. ++.+..++|+.+...+...+ .. ...|+|+|.- +..| + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~~-~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI---VE-NNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH---HH-TCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh---cc-CCCEEEECHHHHHHHHhcCcccccccc
Confidence 78999999999998888887765 78999999988643332222 12 3789999942 2222 3 56678
Q ss_pred CEEEE
Q 011104 420 NLIVN 424 (493)
Q Consensus 420 ~~Vi~ 424 (493)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88875
No 453
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=60.62 E-value=4.1 Score=33.82 Aligned_cols=17 Identities=35% Similarity=0.233 Sum_probs=15.2
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.|+.|||||+..
T Consensus 14 ~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 78999999999999864
No 454
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=60.61 E-value=3.8 Score=34.44 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.8
Q ss_pred cEEEeccCCCchhHHh
Q 011104 142 NLIAQARNGSGKTTCF 157 (493)
Q Consensus 142 ~viv~a~TGsGKT~~~ 157 (493)
.+++.|++|||||+..
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999864
No 455
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=60.47 E-value=4.5 Score=34.78 Aligned_cols=19 Identities=26% Similarity=0.036 Sum_probs=16.2
Q ss_pred ccEEEeccCCCchhHHhHH
Q 011104 141 RNLIAQARNGSGKTTCFVL 159 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~ 159 (493)
.-+.+.||+|+|||+....
T Consensus 26 ~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 7899999999999986443
No 456
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=60.34 E-value=5.6 Score=35.69 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=18.6
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~ 166 (493)
.-+.+.||.|||||+ ++-++..+.
T Consensus 48 e~~~liG~NGsGKST--Llk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTT--LLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHH--HHHHHTTSS
T ss_pred CEEEEECCCCCcHHH--HHHHHhCCC
Confidence 788999999999998 445555543
No 457
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=60.34 E-value=3.5 Score=35.40 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=15.5
Q ss_pred ccEEEeccCCCchhHHhH
Q 011104 141 RNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~ 158 (493)
..+++.|++|||||+..-
T Consensus 6 ~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCE 23 (222)
T ss_dssp CCEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 679999999999998643
No 458
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=60.28 E-value=3.9 Score=38.22 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=15.6
Q ss_pred CCCCccEEEeccCCCchhHHh
Q 011104 137 TPPYRNLIAQARNGSGKTTCF 157 (493)
Q Consensus 137 ~~~~~~viv~a~TGsGKT~~~ 157 (493)
.|.+--++..|+||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 362223799999999999873
No 459
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=60.26 E-value=3.8 Score=34.82 Aligned_cols=17 Identities=29% Similarity=0.112 Sum_probs=14.7
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.-+.+.|++|||||+..
T Consensus 7 ~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 56889999999999863
No 460
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=60.21 E-value=2.5 Score=38.50 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=54.9
Q ss_pred CchhHHhHHHHHhccCCCCCCCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCccc--ccCCCCCCCcEEE
Q 011104 151 SGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVP--ISKRPPVTAQVVI 228 (493)
Q Consensus 151 sGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Ilv 228 (493)
..|.-+ +.-++... .+.++||.|+++.-+..+++.+... ++.+..+++..+..... ......+..+|+|
T Consensus 13 ~~K~~~-L~~ll~~~----~~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLV 83 (300)
T 3i32_A 13 RGRLEV-LSDLLYVA----SPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLV 83 (300)
T ss_dssp SSHHHH-HHHHHHHH----CCSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEE
T ss_pred HHHHHH-HHHHHHhc----CCCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEE
Confidence 456543 33344332 3568999999999988888777654 45666677665443211 1112233578999
Q ss_pred eCchHHHHHHHcCccCCCCeeEEEE
Q 011104 229 GTPGTIKKWMSAKKLGFSRLKILVY 253 (493)
Q Consensus 229 ~Tp~~l~~~l~~~~~~~~~~~~iVl 253 (493)
+|. +-...+++..+++||.
T Consensus 84 aT~------va~~Gidi~~v~~VI~ 102 (300)
T 3i32_A 84 ATD------VAARGLDIPQVDLVVH 102 (300)
T ss_dssp ECS------TTTCSTTCCCCSEEEE
T ss_pred Eec------hhhcCccccceeEEEE
Confidence 994 3345677888888875
No 461
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=60.14 E-value=5 Score=35.41 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=18.7
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~ 166 (493)
.-+.+.||.|||||+ ++-++..+.
T Consensus 32 e~~~l~G~nGsGKST--Ll~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKST--LLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHH--HHHHHTTSS
T ss_pred CEEEEECCCCCCHHH--HHHHHhCCC
Confidence 788999999999998 455555554
No 462
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=60.07 E-value=12 Score=34.64 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=25.2
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccCCCCCCCeEEEEcC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICP 179 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 179 (493)
.-+++.|++|+|||...+-.+..... .+..++|++.
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl 82 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL 82 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC
Confidence 77999999999999875544433322 3556787764
No 463
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=59.99 E-value=3.7 Score=33.89 Aligned_cols=17 Identities=29% Similarity=0.188 Sum_probs=14.2
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.-.++.|++|||||..+
T Consensus 27 g~~~i~G~NGsGKStll 43 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIG 43 (182)
T ss_dssp SEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 36789999999999863
No 464
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=59.90 E-value=3.6 Score=33.95 Aligned_cols=18 Identities=22% Similarity=0.123 Sum_probs=11.6
Q ss_pred ccEEEeccCCCchhHHhH
Q 011104 141 RNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~ 158 (493)
.-+++.|+.|||||...-
T Consensus 6 ~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CEEEEECCC----CHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 679999999999998743
No 465
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=59.88 E-value=7 Score=34.70 Aligned_cols=24 Identities=42% Similarity=0.476 Sum_probs=18.6
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~ 166 (493)
.-+.+.||.|||||+. +-++..+.
T Consensus 31 e~~~i~G~NGsGKSTL--lk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTL--LRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHH--HHHHTTSS
T ss_pred EEEEEECCCCCCHHHH--HHHHhCCC
Confidence 7899999999999984 44555543
No 466
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=59.87 E-value=3.9 Score=35.14 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.1
Q ss_pred ccEEEeccCCCchhHHhH
Q 011104 141 RNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~ 158 (493)
..+.+.|++|||||+..-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 568999999999998643
No 467
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=59.46 E-value=4.6 Score=34.02 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.5
Q ss_pred ccEEEeccCCCchhHHhH
Q 011104 141 RNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~ 158 (493)
..+++.|++|||||+..-
T Consensus 21 ~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 579999999999998643
No 468
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=59.20 E-value=4.1 Score=36.15 Aligned_cols=17 Identities=29% Similarity=0.278 Sum_probs=15.0
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.-++++|++|||||...
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 57899999999999864
No 469
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=59.18 E-value=42 Score=28.04 Aligned_cols=123 Identities=12% Similarity=0.136 Sum_probs=78.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEeCc----cccCCCCCCCCEEEEc
Q 011104 350 MGQTIIFVRTKNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDV----LARGFDQQQVNLIVNY 425 (493)
Q Consensus 350 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~g~~~vLv~T~~----~~~Gldi~~v~~Vi~~ 425 (493)
..+++++++.......+.+.+.+.+..+..+.+++... ......+ ....+|+|+-.. +..-+++| ||..
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~--v~~a~~~-~~~~dVIISRGgta~~lr~~~~iP----VV~I 76 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRA--SKIAFGL-QDEVDAIISRGATSDYIKKSVSIP----SISI 76 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHH--HHHHHHH-TTTCSEEEEEHHHHHHHHTTCSSC----EEEE
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHH--HHHHHHh-cCCCeEEEECChHHHHHHHhCCCC----EEEE
Confidence 35788888888877777777777677888888887432 3333444 566789998632 33444444 3332
Q ss_pred cCCCCCCCCCCCCcccccccccccccCCCcceEEEEeeCCccHHHHHHHHHHhCCCceeecCccccc
Q 011104 426 DPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDIKVTEVQTCTCET 492 (493)
Q Consensus 426 ~~p~~~~~~~~~s~~~y~qr~GR~~R~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 492 (493)
+ .|.-++++.+-++-+.+. -.++.-+ ..-..-++.+.+.++.++..+...+.+|
T Consensus 77 --~--------~s~~Dil~al~~a~~~~~-kIavvg~--~~~~~~~~~~~~ll~~~i~~~~~~~~~e 130 (196)
T 2q5c_A 77 --K--------VTRFDTMRAVYNAKRFGN-ELALIAY--KHSIVDKHEIEAMLGVKIKEFLFSSEDE 130 (196)
T ss_dssp --C--------CCHHHHHHHHHHHGGGCS-EEEEEEE--SSCSSCHHHHHHHHTCEEEEEEECSGGG
T ss_pred --c--------CCHhHHHHHHHHHHhhCC-cEEEEeC--cchhhHHHHHHHHhCCceEEEEeCCHHH
Confidence 2 456667887777766543 2333333 3334446789999999999887776654
No 470
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=59.16 E-value=4.8 Score=42.07 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=16.3
Q ss_pred CccEEEeccCCCchhHHhH
Q 011104 140 YRNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 140 ~~~viv~a~TGsGKT~~~~ 158 (493)
..++++.||+|+|||..+-
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3689999999999998743
No 471
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=58.99 E-value=4.2 Score=34.36 Aligned_cols=16 Identities=38% Similarity=0.214 Sum_probs=13.8
Q ss_pred cEEEeccCCCchhHHh
Q 011104 142 NLIAQARNGSGKTTCF 157 (493)
Q Consensus 142 ~viv~a~TGsGKT~~~ 157 (493)
.+.+.|+.|||||+..
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999864
No 472
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=58.91 E-value=4.3 Score=33.78 Aligned_cols=16 Identities=38% Similarity=0.368 Sum_probs=13.7
Q ss_pred cEEEeccCCCchhHHh
Q 011104 142 NLIAQARNGSGKTTCF 157 (493)
Q Consensus 142 ~viv~a~TGsGKT~~~ 157 (493)
-+++.|+.|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999864
No 473
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=58.58 E-value=7 Score=30.57 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=32.6
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhCCCc-EEEecCCCC
Q 011104 349 KMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATI 385 (493)
Q Consensus 349 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~ 385 (493)
...+++|||.+-..+..++..|...|+. +..+.|++.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4678999999988899999999999995 999999874
No 474
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=58.51 E-value=4 Score=34.84 Aligned_cols=17 Identities=24% Similarity=0.122 Sum_probs=14.3
Q ss_pred cEEEeccCCCchhHHhH
Q 011104 142 NLIAQARNGSGKTTCFV 158 (493)
Q Consensus 142 ~viv~a~TGsGKT~~~~ 158 (493)
.+++.|++|||||+..-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 475
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=58.34 E-value=4.4 Score=33.82 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=13.3
Q ss_pred EEEeccCCCchhHHh
Q 011104 143 LIAQARNGSGKTTCF 157 (493)
Q Consensus 143 viv~a~TGsGKT~~~ 157 (493)
+++.|+.|||||+..
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999864
No 476
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=58.34 E-value=4.3 Score=35.56 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=15.1
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.|+.|||||+..
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 68999999999999853
No 477
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=58.29 E-value=4.1 Score=34.39 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=13.9
Q ss_pred cEEEeccCCCchhHHh
Q 011104 142 NLIAQARNGSGKTTCF 157 (493)
Q Consensus 142 ~viv~a~TGsGKT~~~ 157 (493)
.+.+.|+.|||||+..
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999864
No 478
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=58.23 E-value=4.5 Score=34.26 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=15.4
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.-+++.|+.|||||+..
T Consensus 11 ~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 78999999999999864
No 479
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=58.11 E-value=5.1 Score=40.43 Aligned_cols=15 Identities=13% Similarity=0.352 Sum_probs=14.0
Q ss_pred cEEEeccCCCchhHH
Q 011104 142 NLIAQARNGSGKTTC 156 (493)
Q Consensus 142 ~viv~a~TGsGKT~~ 156 (493)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999984
No 480
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=58.08 E-value=4.4 Score=34.88 Aligned_cols=17 Identities=41% Similarity=0.386 Sum_probs=14.3
Q ss_pred cEEEeccCCCchhHHhH
Q 011104 142 NLIAQARNGSGKTTCFV 158 (493)
Q Consensus 142 ~viv~a~TGsGKT~~~~ 158 (493)
.+++.|+.|||||+..-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 481
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=57.67 E-value=8.7 Score=36.52 Aligned_cols=40 Identities=13% Similarity=-0.132 Sum_probs=25.9
Q ss_pred CccEEEeccCCCchhHHhHHHHHhccCCC---CCCCeEEEEcC
Q 011104 140 YRNLIAQARNGSGKTTCFVLGMLSRVDPN---LKAPQALCICP 179 (493)
Q Consensus 140 ~~~viv~a~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~P 179 (493)
+.-+.+.|++|+|||......++..+.+. ..+..++++.-
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 37899999999999987654344433321 12446777764
No 482
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=57.33 E-value=23 Score=34.32 Aligned_cols=68 Identities=29% Similarity=0.243 Sum_probs=49.6
Q ss_pred EEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHhCCCc-EEEecCCCCHHHHHHHHHHHHcCCCcE
Q 011104 325 YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKDFGYE-VTTIMGATIQEERDKIVKEFKDGLTQV 403 (493)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~-~~~l~~~~~~~~r~~~~~~f~~g~~~v 403 (493)
..+..+....|.......+... ..++||.|+++.-+....+.|...++. +..+||+... ...|
T Consensus 111 ~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~I 174 (472)
T 2fwr_A 111 GCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPL 174 (472)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSE
T ss_pred EEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCE
Confidence 3444555555555444433333 579999999999999999999998999 9999998752 3578
Q ss_pred EEEeC
Q 011104 404 LISTD 408 (493)
Q Consensus 404 Lv~T~ 408 (493)
+|+|.
T Consensus 175 vv~T~ 179 (472)
T 2fwr_A 175 TVSTY 179 (472)
T ss_dssp EEEEH
T ss_pred EEEEc
Confidence 88883
No 483
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=57.25 E-value=8.9 Score=29.96 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=32.3
Q ss_pred cCCcEEEEcCChhhHHHHHHHHHhCCC-cEEEecCCCC
Q 011104 349 KMGQTIIFVRTKNSASALHKALKDFGY-EVTTIMGATI 385 (493)
Q Consensus 349 ~~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~l~~~~~ 385 (493)
+..+++|||.+-..+...+..|...|+ ++..+.|++.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 457899999998889999999999999 4889999874
No 484
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=56.95 E-value=5.3 Score=32.30 Aligned_cols=16 Identities=31% Similarity=0.297 Sum_probs=14.5
Q ss_pred ccEEEeccCCCchhHH
Q 011104 141 RNLIAQARNGSGKTTC 156 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~ 156 (493)
.-+.+.||.|+|||..
T Consensus 34 e~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTL 49 (158)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 7788999999999984
No 485
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=56.87 E-value=20 Score=36.89 Aligned_cols=93 Identities=14% Similarity=0.210 Sum_probs=63.4
Q ss_pred EEEeCCChHHHHHHHHHHHHHhcccCCcEEEEcCChhhHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 011104 325 YKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTKNSASALHKALKD---FGYEVTTIMGATIQEERDKIVKEFKDGLT 401 (493)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~lVf~~s~~~~~~l~~~L~~---~~~~~~~l~~~~~~~~r~~~~~~f~~g~~ 401 (493)
..+..+....|.......+......++++++.++++.-+...++.++. .|+.+..++|+.....+ ..+..
T Consensus 43 ~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~ 115 (702)
T 2p6r_A 43 LLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDC 115 (702)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTC
T ss_pred EEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCC
Confidence 456667777776654433333333468999999999999999998843 47899999998765432 12467
Q ss_pred cEEEEeC-----ccccCCC-CCCCCEEEE
Q 011104 402 QVLISTD-----VLARGFD-QQQVNLIVN 424 (493)
Q Consensus 402 ~vLv~T~-----~~~~Gld-i~~v~~Vi~ 424 (493)
.|+|+|. .+..+.. +.++++||.
T Consensus 116 ~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 116 DIIVTTSEKADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp SEEEEEHHHHHHHHHTTCSGGGGCCEEEE
T ss_pred CEEEECHHHHHHHHHcChhHHhhcCEEEE
Confidence 8999995 2223333 567888885
No 486
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=56.75 E-value=19 Score=37.62 Aligned_cols=78 Identities=13% Similarity=0.086 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHHHhc-------ccCceeeEeecCCCCCccc--ccCCC-----CCCCcEEEeCchHHH
Q 011104 170 KAPQALCICPTRELAIQNLEVLRKMGK-------HTGITSECAVPTDSTNYVP--ISKRP-----PVTAQVVIGTPGTIK 235 (493)
Q Consensus 170 ~~~~~lil~Pt~~La~q~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~Ilv~Tp~~l~ 235 (493)
.+..+||.||++.-+..+++.+..... ..++.+..++++....... ..... .+...|+|+|.
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~---- 377 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN---- 377 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT----
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc----
Confidence 356899999999999999988876322 2356666677765433221 22222 44678999995
Q ss_pred HHHHcCccCCCCeeEEEE
Q 011104 236 KWMSAKKLGFSRLKILVY 253 (493)
Q Consensus 236 ~~l~~~~~~~~~~~~iVl 253 (493)
+-...+++..+++||-
T Consensus 378 --iae~GidIp~v~~VId 393 (773)
T 2xau_A 378 --IAETSLTIDGIVYVVD 393 (773)
T ss_dssp --HHHHTCCCTTEEEEEE
T ss_pred --HHHhCcCcCCeEEEEe
Confidence 2223567888887664
No 487
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=56.74 E-value=7.2 Score=32.59 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=14.6
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+.+.|++|+|||+..
T Consensus 2 ~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCEEEESCCSSCHHHHH
T ss_pred CEEEEECCCCChHHHHH
Confidence 56889999999999853
No 488
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=56.65 E-value=4.9 Score=38.76 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=15.2
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
+++++.||+|+|||+.+
T Consensus 51 ~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 67999999999999864
No 489
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=56.54 E-value=6.7 Score=34.91 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=17.9
Q ss_pred ccEEEeccCCCchhHHhHHHHHhcc
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRV 165 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l 165 (493)
.-+.+.||.|||||+. +-++..+
T Consensus 47 e~~~l~G~NGsGKSTL--lk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTL--SATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHH--HHHHHTC
T ss_pred CEEEEECCCCCCHHHH--HHHHhCC
Confidence 7899999999999984 4444444
No 490
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=56.46 E-value=5.4 Score=36.48 Aligned_cols=17 Identities=18% Similarity=0.018 Sum_probs=14.9
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.-+.+.|++|||||+.+
T Consensus 91 ~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred EEEEEECCCCchHHHHH
Confidence 77889999999999853
No 491
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=56.43 E-value=6.6 Score=32.15 Aligned_cols=16 Identities=31% Similarity=0.162 Sum_probs=13.5
Q ss_pred ccEEEeccCCCchhHH
Q 011104 141 RNLIAQARNGSGKTTC 156 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~ 156 (493)
.-+.+.|+.|||||..
T Consensus 5 ~~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTL 20 (169)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 3578899999999985
No 492
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=56.06 E-value=4.9 Score=34.40 Aligned_cols=17 Identities=47% Similarity=0.493 Sum_probs=15.0
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.|++|||||+..
T Consensus 6 ~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56899999999999864
No 493
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=56.00 E-value=5 Score=35.14 Aligned_cols=18 Identities=33% Similarity=0.279 Sum_probs=15.8
Q ss_pred ccEEEeccCCCchhHHhH
Q 011104 141 RNLIAQARNGSGKTTCFV 158 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~ 158 (493)
..+++.|+.|||||+..-
T Consensus 30 ~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 679999999999998743
No 494
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=55.94 E-value=7.2 Score=34.09 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=18.0
Q ss_pred ccEEEeccCCCchhHHhHHHHHhccC
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRVD 166 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l~ 166 (493)
.-+.+.||.|||||+ ++-++..+.
T Consensus 25 e~~~liG~nGsGKST--Ll~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSV--FLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHH--HHHHHHTSS
T ss_pred EEEEEECCCCCCHHH--HHHHHhCCC
Confidence 467899999999998 445555553
No 495
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=55.82 E-value=7.1 Score=34.35 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=17.8
Q ss_pred ccEEEeccCCCchhHHhHHHHHhcc
Q 011104 141 RNLIAQARNGSGKTTCFVLGMLSRV 165 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~~~~~l~~l 165 (493)
.-+.+.||.|||||+. +-++..+
T Consensus 30 e~~~l~G~nGsGKSTL--lk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTL--GKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHH--HHHHHTC
T ss_pred CEEEEECCCCCCHHHH--HHHHhCC
Confidence 7899999999999984 4444443
No 496
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=55.80 E-value=4.5 Score=35.68 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=15.1
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
..+++.|++|||||+.+
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 67999999999999864
No 497
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=55.63 E-value=5.3 Score=41.40 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=21.0
Q ss_pred hhhhhcCCCCccEEEeccCCCchhHH
Q 011104 131 SLPMILTPPYRNLIAQARNGSGKTTC 156 (493)
Q Consensus 131 ~i~~il~~~~~~viv~a~TGsGKT~~ 156 (493)
.+..++.|.+-.++.-|+||||||..
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~T 479 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFT 479 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhc
Confidence 46667888556688889999999986
No 498
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=55.60 E-value=5.4 Score=33.85 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=15.4
Q ss_pred ccEEEeccCCCchhHHh
Q 011104 141 RNLIAQARNGSGKTTCF 157 (493)
Q Consensus 141 ~~viv~a~TGsGKT~~~ 157 (493)
.-+++.|+.|||||+..
T Consensus 10 ~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 78999999999999874
No 499
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=55.54 E-value=8.8 Score=36.30 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=49.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhcccCceeeEeecCCCCCcc--cccCCCCCCCcEEEeCchHHHHHHHcCccCCCCe
Q 011104 171 APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYV--PISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRL 248 (493)
Q Consensus 171 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 248 (493)
+.++||.|+++.-+..+++.+... +..+..+++....... .......+..+|+|+|. +-...+++.++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------VCARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC------ccccCCCccCC
Confidence 458999999999999999888876 3445556655433211 11112234568999994 33456788899
Q ss_pred eEEEE
Q 011104 249 KILVY 253 (493)
Q Consensus 249 ~~iVl 253 (493)
++||.
T Consensus 336 ~~Vi~ 340 (412)
T 3fht_A 336 SVVIN 340 (412)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 99885
No 500
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=55.05 E-value=23 Score=32.10 Aligned_cols=47 Identities=13% Similarity=0.293 Sum_probs=39.9
Q ss_pred CcEEEEcCC-----------hhhHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHc
Q 011104 351 GQTIIFVRT-----------KNSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKD 398 (493)
Q Consensus 351 ~~~lVf~~s-----------~~~~~~l~~~L~~~~~~~~~l~~~~~~~~r~~~~~~f~~ 398 (493)
+-+|||+|. ...++.|.+.|+.+|+.|. ++.+++..+-.+.++.|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 458999987 6689999999999999976 4557899999999999964
Done!