Your job contains 1 sequence.
>011105
MPRTRGSTAAADNPDAPENPTEREKPIESEERVDLDEDNDHEEEVEEEVEYEEVEEEEEV
EVEEEVEEEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGS
EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE
LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN
QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKN
LPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI
DGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQ
PMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGAGSSSSGGRRS
TDNGRGRSRYNPY
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 011105
(493 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2083248 - symbol:AT3G52660 species:3702 "Arabi... 1301 2.8e-137 2
TAIR|locus:2134638 - symbol:LIF2 "LHP1-Interacting Factor... 1101 2.6e-113 2
TAIR|locus:2146564 - symbol:AT5G28390 species:3702 "Arabi... 410 4.8e-52 2
FB|FBgn0038826 - symbol:Syp "Syncrip" species:7227 "Droso... 448 7.7e-42 1
UNIPROTKB|I3LKZ4 - symbol:HNRNPR "Uncharacterized protein... 433 9.6e-41 1
UNIPROTKB|F6XIK8 - symbol:SYNCRIP "Uncharacterized protei... 432 1.2e-40 1
RGD|631348 - symbol:Hnrnpr "heterogeneous nuclear ribonuc... 433 1.3e-40 1
UNIPROTKB|Q566E4 - symbol:Hnrnpr "Heterogeneous nuclear r... 433 1.3e-40 1
UNIPROTKB|A3KMV6 - symbol:HNRNPR "Uncharacterized protein... 433 1.3e-40 1
UNIPROTKB|E2RE36 - symbol:HNRNPR "Uncharacterized protein... 433 1.3e-40 1
UNIPROTKB|O43390 - symbol:HNRNPR "Heterogeneous nuclear r... 433 1.3e-40 1
UNIPROTKB|O60506 - symbol:SYNCRIP "Heterogeneous nuclear ... 432 1.4e-40 1
UNIPROTKB|F2Z5D4 - symbol:SYNCRIP "Uncharacterized protei... 432 1.5e-40 1
RGD|1305683 - symbol:Syncrip "synaptotagmin binding, cyto... 431 1.6e-40 1
UNIPROTKB|Q7TP47 - symbol:Syncrip "Heterogeneous nuclear ... 431 1.6e-40 1
UNIPROTKB|F1NWI9 - symbol:SYNCRIP "Uncharacterized protei... 431 1.7e-40 1
MGI|MGI:1891690 - symbol:Syncrip "synaptotagmin binding, ... 431 1.8e-40 1
UNIPROTKB|F1MCT8 - symbol:SYNCRIP "Uncharacterized protei... 432 1.9e-40 1
UNIPROTKB|F1LUZ6 - symbol:Hnrnpr "Protein Hnrnpr" species... 428 3.3e-40 1
UNIPROTKB|E1BZR1 - symbol:HNRNPR "Uncharacterized protein... 430 4.7e-40 1
ZFIN|ZDB-GENE-030131-3104 - symbol:syncripl "synaptotagmi... 423 1.1e-39 1
UNIPROTKB|Q2L7G6 - symbol:HNRNPR "Heterogeneous nuclear r... 420 2.3e-39 1
ZFIN|ZDB-GENE-030131-4862 - symbol:syncrip "synaptotagmin... 418 1.4e-38 1
WB|WBGene00002000 - symbol:hrp-2 species:6239 "Caenorhabd... 387 2.3e-37 2
UNIPROTKB|E1BVJ9 - symbol:RBM47 "Uncharacterized protein"... 399 6.5e-37 1
UNIPROTKB|B7Z8Z7 - symbol:RBM47 "cDNA FLJ51456, moderatel... 393 1.7e-36 1
UNIPROTKB|D6R9D6 - symbol:RBM47 "RNA-binding protein 47" ... 393 1.7e-36 1
UNIPROTKB|A0AV96 - symbol:RBM47 "RNA-binding protein 47" ... 393 3.0e-36 1
ZFIN|ZDB-GENE-030131-9612 - symbol:si:ch211-241e15.2 "si:... 392 4.4e-36 1
UNIPROTKB|F6RYN2 - symbol:RBM47 "Uncharacterized protein"... 389 8.4e-36 1
UNIPROTKB|F1S4H0 - symbol:RBM47 "Uncharacterized protein"... 389 8.4e-36 1
UNIPROTKB|E1B7G9 - symbol:A1CF "Uncharacterized protein" ... 389 8.9e-36 1
UNIPROTKB|F1Q212 - symbol:RBM47 "RNA-binding protein 47" ... 388 1.1e-35 1
UNIPROTKB|Q9XSR3 - symbol:RBM47 "RNA-binding protein 47" ... 388 1.1e-35 1
UNIPROTKB|F1SD00 - symbol:A1CF "Uncharacterized protein" ... 384 1.5e-35 1
UNIPROTKB|E2QVD3 - symbol:SYNCRIP "Uncharacterized protei... 388 1.6e-35 1
UNIPROTKB|E1BQR8 - symbol:A1CF "Uncharacterized protein" ... 382 2.4e-35 1
RGD|619834 - symbol:A1cf "APOBEC1 complementation factor"... 384 3.3e-35 1
UNIPROTKB|F1LNL0 - symbol:A1cf "APOBEC1 complementation f... 384 3.3e-35 1
UNIPROTKB|E1BV69 - symbol:RBM46 "Uncharacterized protein"... 380 4.0e-35 1
ZFIN|ZDB-GENE-061013-298 - symbol:rbm46 "RNA binding moti... 380 4.0e-35 1
MGI|MGI:2384294 - symbol:Rbm47 "RNA binding motif protein... 383 4.0e-35 1
MGI|MGI:1917115 - symbol:A1cf "APOBEC1 complementation fa... 383 4.3e-35 1
UNIPROTKB|F8W9F8 - symbol:A1CF "APOBEC1 complementation f... 382 5.1e-35 1
RGD|1359713 - symbol:Rbm47 "RNA binding motif protein 47"... 382 5.3e-35 1
UNIPROTKB|Q9NQ94 - symbol:A1CF "APOBEC1 complementation f... 382 5.6e-35 1
UNIPROTKB|E2QWK5 - symbol:A1CF "Uncharacterized protein" ... 381 6.8e-35 1
UNIPROTKB|E2R8F4 - symbol:RBM46 "Uncharacterized protein"... 377 8.3e-35 1
UNIPROTKB|E2RTF9 - symbol:RBM46 "Uncharacterized protein"... 377 8.3e-35 1
UNIPROTKB|B3KWU8 - symbol:RBM46 "Putative uncharacterized... 377 8.3e-35 1
UNIPROTKB|B4DZ27 - symbol:RBM46 "Probable RNA-binding pro... 377 8.3e-35 1
UNIPROTKB|Q8TBY0 - symbol:RBM46 "Probable RNA-binding pro... 377 8.3e-35 1
UNIPROTKB|F1RYR7 - symbol:RBM46 "Uncharacterized protein"... 377 8.3e-35 1
MGI|MGI:3645057 - symbol:Rbm46 "RNA binding motif protein... 377 8.3e-35 1
RGD|1560205 - symbol:Rbm46 "RNA binding motif protein 46"... 377 8.3e-35 1
UNIPROTKB|Q5R9H4 - symbol:A1CF "APOBEC1 complementation f... 380 8.5e-35 1
ZFIN|ZDB-GENE-060824-3 - symbol:a1cf "apobec1 complementa... 379 1.1e-34 1
UNIPROTKB|E1BB24 - symbol:RBM46 "Uncharacterized protein"... 375 1.3e-34 1
TAIR|locus:2042366 - symbol:AT2G44710 species:3702 "Arabi... 360 5.0e-32 1
DICTYBASE|DDB_G0282293 - symbol:rnpA "putative RNA bindin... 304 1.0e-31 2
UNIPROTKB|F1NJQ8 - symbol:RBM46 "Uncharacterized protein"... 335 2.3e-30 1
UNIPROTKB|E7ETM7 - symbol:HNRNPR "Heterogeneous nuclear r... 313 7.2e-28 1
UNIPROTKB|F1LM17 - symbol:F1LM17 "Uncharacterized protein... 284 4.4e-25 2
UNIPROTKB|Q5T0W7 - symbol:A1CF "APOBEC1 complementation f... 265 6.4e-23 1
UNIPROTKB|D6RBS9 - symbol:RBM47 "RNA-binding protein 47" ... 247 8.9e-21 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 248 2.0e-18 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 231 3.3e-17 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 231 6.8e-17 1
UNIPROTKB|F1SMV6 - symbol:LOC100737174 "Uncharacterized p... 225 1.7e-16 1
UNIPROTKB|I3LRH2 - symbol:LOC100737210 "Uncharacterized p... 225 2.3e-16 2
UNIPROTKB|H7BY16 - symbol:NCL "Nucleolin" species:9606 "H... 165 2.9e-16 2
UNIPROTKB|Q5RF26 - symbol:NCL "Nucleolin" species:9601 "P... 223 2.9e-16 2
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 227 6.0e-16 1
UNIPROTKB|P19338 - symbol:NCL "Nucleolin" species:9606 "H... 223 6.7e-16 3
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 225 9.3e-16 1
UNIPROTKB|Q4R4J7 - symbol:NCL "Nucleolin" species:9541 "M... 223 1.2e-15 2
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 214 1.9e-15 1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 222 1.9e-15 1
UNIPROTKB|F1P336 - symbol:NCL "Nucleolin" species:9031 "G... 224 2.2e-15 2
UNIPROTKB|F1NU40 - symbol:NCL "Nucleolin" species:9031 "G... 224 2.2e-15 2
UNIPROTKB|P15771 - symbol:NCL "Nucleolin" species:9031 "G... 224 2.3e-15 2
UNIPROTKB|F1Q0B0 - symbol:NCL "Uncharacterized protein" s... 221 3.2e-15 3
UNIPROTKB|E1B8K6 - symbol:NCL "Uncharacterized protein" s... 220 4.7e-15 2
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 217 7.5e-15 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 209 1.1e-14 1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 215 1.2e-14 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 192 1.3e-14 1
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 214 1.6e-14 1
TAIR|locus:2115169 - symbol:AT4G36960 species:3702 "Arabi... 144 1.6e-14 2
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 214 1.6e-14 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 214 1.7e-14 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 213 2.2e-14 1
UNIPROTKB|G3MYJ0 - symbol:G3MYJ0 "Uncharacterized protein... 209 2.2e-14 2
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 213 2.2e-14 1
UNIPROTKB|G3X7M4 - symbol:G3X7M4 "Uncharacterized protein... 209 2.3e-14 2
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 212 2.8e-14 1
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 212 3.1e-14 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 211 3.4e-14 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 211 3.6e-14 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 211 3.6e-14 1
WARNING: Descriptions of 1047 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2083248 [details] [associations]
symbol:AT3G52660 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 eggNOG:NOG258596
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 EMBL:AL353912
KO:K13161 HOGENOM:HOG000243749 ProtClustDB:CLSN2698006
EMBL:BT029158 EMBL:AK176325 EMBL:AK176862 IPI:IPI00534328
PIR:T49019 RefSeq:NP_001030849.1 RefSeq:NP_190834.1
UniGene:At.48763 ProteinModelPortal:Q9LXJ8 SMR:Q9LXJ8 PaxDb:Q9LXJ8
PRIDE:Q9LXJ8 EnsemblPlants:AT3G52660.1 EnsemblPlants:AT3G52660.2
GeneID:824432 KEGG:ath:AT3G52660 TAIR:At3g52660 InParanoid:Q9LXJ8
OMA:HDSMESE PhylomeDB:Q9LXJ8 ArrayExpress:Q9LXJ8
Genevestigator:Q9LXJ8 Uniprot:Q9LXJ8
Length = 471
Score = 1301 (463.0 bits), Expect = 2.8e-137, Sum P(2) = 2.8e-137
Identities = 248/409 (60%), Positives = 303/409 (74%)
Query: 92 DEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
+EE +++++EKK+H ELLALPPHGSEVYLGGIP DA++ DL+ FC SIGEVTEVRI
Sbjct: 64 EEEEDAVATEEEEEKKRHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRI 123
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 211
M+ KDSG+ KGYAFVTFR+K+LA++AI+ LN+ + +GK+IKCS QAKHRLF+GNVPRNW
Sbjct: 124 MREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKHRLFLGNVPRNW 183
Query: 212 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 271
E D++KA +IGPGV +EL K+PQN +NRGFAFIEYYNHACAEYS+QKMSNP FKLD
Sbjct: 184 MESDIKKAANRIGPGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLD 243
Query: 272 DNAPTVSWADPRNAES--SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 329
DNAPTVSWA+ R+ S+ASQVKALY+KNLP+DITQ+RLK LF HHGKI KVVIPPAK
Sbjct: 244 DNAPTVSWAESRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAK 303
Query: 330 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS--NSQKS 387
PG+E SRYGFVH+AER+S M+ALKNTE+YEIDG +LDC+LAKPQADQKT+ + N QKS
Sbjct: 304 PGKEDSRYGFVHYAERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKTNTNTVQNVQKS 363
Query: 388 ALNPTYPPHXXXXXXXXXXXXXXXXXXXXXFAQPMVYGRGAAPGGMAMLPMLLPDGRIGY 447
L P YPP ++QP+++ G A GGM+M+P++LPDGRIGY
Sbjct: 364 QLQPNYPP-LLSYGMAPSPFGALGGFGASAYSQPLMHAGGHAAGGMSMMPIMLPDGRIGY 422
Query: 448 VLQQPGVQ-QHNPPPQ--PXXXXXXXXXXXXXXXXXXXXXXXXXXYNPY 493
VLQQPG+ PPP+ P YNPY
Sbjct: 423 VLQQPGLAAMPQPPPRHSPPYRGGSGSSSSSGSKRSSDNGRGRSRYNPY 471
Score = 64 (27.6 bits), Expect = 2.8e-137, Sum P(2) = 2.8e-137
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 21 TEREKPIESEERVDLDEDND 40
+E +ESEERVDLD DND
Sbjct: 9 SEAHDSMESEERVDLDGDND 28
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 1101 (392.6 bits), Expect = 2.6e-113, Sum P(2) = 2.6e-113
Identities = 205/386 (53%), Positives = 280/386 (72%)
Query: 84 DAQKHYD---GDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFC 140
D H D D++ K D++++K++ LL+LPPHGSEV++GG+P D ++DLR C
Sbjct: 77 DDDNHIDIETADDDEKPPSPIDDEDREKYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLC 136
Query: 141 KSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
+ IGE+ EVR+MK +DSG++KGYAFV F+TK++A +AIEEL+S E KGK I+CS ++ K+
Sbjct: 137 EEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKN 196
Query: 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 260
RLFIGN+P+NW ED+ RK + +GPGV +IEL+KDP N +NRGFAF+ YYN+ACA+YSR
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSR 256
Query: 261 QKMSNPKFKLDDNAPTVSWADPRNA--ESSAASQVKALYVKNLPKDITQDRLKELFAHHG 318
QKM + FKL+ NAPTV+WADP+++ S+AA+QVKALYVKN+P++ + ++LKELF HG
Sbjct: 257 QKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHG 316
Query: 319 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
++TK+V PP K G+ +GFVH+AERSSA+KA+K+TE+YE++GQ L+ LAKPQA++K
Sbjct: 317 EVTKIVTPPGKGGKRD--FGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKH 374
Query: 379 SGGSNSQKSALNPT--YPPHXXXXXXXXXXXXXXXXXXXXXFAQPMVYGRGAAPGGMAML 436
S S +A P P F+QPM+YGRGA P GM M+
Sbjct: 375 DPSSYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQMV 434
Query: 437 PMLLPDGRIGYVLQQPGVQQHNPPPQ 462
PMLLPDGR+GYVLQQPG+ PPQ
Sbjct: 435 PMLLPDGRVGYVLQQPGMPMAAAPPQ 460
Score = 37 (18.1 bits), Expect = 2.6e-113, Sum P(2) = 2.6e-113
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 22 EREKPIESEERVDLDEDND 40
E E+ E EE + D+D+D
Sbjct: 26 EEEQVEEYEEEEEEDDDDD 44
>TAIR|locus:2146564 [details] [associations]
symbol:AT5G28390 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530379 RefSeq:NP_198191.2 UniGene:At.49421
ProteinModelPortal:F4K739 SMR:F4K739 EnsemblPlants:AT5G28390.1
GeneID:832924 KEGG:ath:AT5G28390 PhylomeDB:F4K739 Uniprot:F4K739
Length = 180
Score = 410 (149.4 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
Identities = 78/101 (77%), Positives = 89/101 (88%)
Query: 263 MSNPKFKLDDNAPTVSWADPRNAES--SAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
MSNP FKLDDNAPTVSWA+ R+ S+ASQVKALY+KNLP+DITQ+RLK LF HHGKI
Sbjct: 1 MSNPSFKLDDNAPTVSWAESRSGGEGDSSASQVKALYIKNLPRDITQERLKALFEHHGKI 60
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 361
KVVIPPAKPG+E SRYGFVH+AER+S M+ALKNTE+YEID
Sbjct: 61 LKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEID 101
Score = 147 (56.8 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
Identities = 26/47 (55%), Positives = 37/47 (78%)
Query: 418 FAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQ-QHNPPPQP 463
++QP+++ G A GGM+M+P++LPDGRI YVLQQPG+ PPP+P
Sbjct: 105 YSQPLMHAGGHAAGGMSMMPIMLPDGRIRYVLQQPGLAAMPQPPPRP 151
Score = 62 (26.9 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 14/65 (21%), Positives = 30/65 (46%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+ +P D + + L+ + G++ +V I K E Y FV + + +A++
Sbjct: 36 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNT 95
Query: 182 NSCEL 186
E+
Sbjct: 96 ERYEI 100
>FB|FBgn0038826 [details] [associations]
symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=IMP] [GO:0046843 "dorsal appendage formation"
evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
Length = 711
Score = 448 (162.8 bits), Expect = 7.7e-42, P = 7.7e-42
Identities = 90/265 (33%), Positives = 159/265 (60%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 338
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 339 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 390
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 391 RGLNGKEIGASNIEVSLAKPPSDKK 415
>UNIPROTKB|I3LKZ4 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YYPPPRM Ensembl:ENSSSCT00000026418 Uniprot:I3LKZ4
Length = 599
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 90/280 (32%), Positives = 166/280 (59%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 393
EI+G+ ++ LAKP D+K +++++ + Y
Sbjct: 393 EMNGKEIEGEEIEIVLAKPP-DKKRKERQAARQASRSTAY 431
>UNIPROTKB|F6XIK8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:10492 KO:K13160 OMA:GNMATEH Ensembl:ENSCAFT00000004869
EMBL:AAEX03008501 RefSeq:XP_003431698.1 ProteinModelPortal:F6XIK8
GeneID:474986 KEGG:cfa:474986 Uniprot:F6XIK8
Length = 562
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 93/290 (32%), Positives = 166/290 (57%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPH 396
+++G+ ++ AKP DQK +++A N Y PPH
Sbjct: 390 EMNGKDLEGENIEIVFAKPP-DQKRKERKAQRQAAKNQMYDDYYYYGPPH 438
>RGD|631348 [details] [associations]
symbol:Hnrnpr "heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:631348 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0030529 HSSP:O08583
IPI:IPI00194562 UniGene:Rn.195396 EMBL:AY184814
ProteinModelPortal:Q811S1 SMR:Q811S1 STRING:Q811S1 PRIDE:Q811S1
UCSC:RGD:631348 InParanoid:Q811S1 Genevestigator:Q811S1
Uniprot:Q811S1
Length = 632
Score = 433 (157.5 bits), Expect = 1.3e-40, P = 1.3e-40
Identities = 90/280 (32%), Positives = 166/280 (59%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEEAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 393
EI+G+ ++ LAKP D+K +++++ + Y
Sbjct: 393 EMNGKEIEGEEIEIVLAKPP-DKKRKERQAARQASRSTAY 431
>UNIPROTKB|Q566E4 [details] [associations]
symbol:Hnrnpr "Heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:631348 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0071013 OrthoDB:EOG4FN4HM
HOGENOM:HOG000186082 CTD:10236 KO:K13161 EMBL:BC093598
IPI:IPI00194562 RefSeq:NP_783193.2 UniGene:Rn.195396 SMR:Q566E4
STRING:Q566E4 Ensembl:ENSRNOT00000016001 GeneID:319110
KEGG:rno:319110 InParanoid:Q566E4 NextBio:672099
Genevestigator:Q566E4 Uniprot:Q566E4
Length = 632
Score = 433 (157.5 bits), Expect = 1.3e-40, P = 1.3e-40
Identities = 90/280 (32%), Positives = 166/280 (59%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 393
EI+G+ ++ LAKP D+K +++++ + Y
Sbjct: 393 EMNGKEIEGEEIEIVLAKPP-DKKRKERQAARQASRSTAY 431
>UNIPROTKB|A3KMV6 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 GO:GO:0071013
OrthoDB:EOG4FN4HM HOGENOM:HOG000186082 CTD:10236 KO:K13161
OMA:YYPPPRM EMBL:DAAA02006438 EMBL:BC133299 IPI:IPI00704335
RefSeq:NP_001076077.1 UniGene:Bt.3687 SMR:A3KMV6 STRING:A3KMV6
Ensembl:ENSBTAT00000022054 GeneID:512479 KEGG:bta:512479
InParanoid:A3KMV6 NextBio:20870409 Uniprot:A3KMV6
Length = 633
Score = 433 (157.5 bits), Expect = 1.3e-40, P = 1.3e-40
Identities = 90/280 (32%), Positives = 166/280 (59%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 393
EI+G+ ++ LAKP D+K +++++ + Y
Sbjct: 393 EMNGKEIEGEEIEIVLAKPP-DKKRKERQAARQASRSTAY 431
>UNIPROTKB|E2RE36 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 CTD:10236 KO:K13161 OMA:YYPPPRM EMBL:AAEX03001757
RefSeq:XP_852945.1 ProteinModelPortal:E2RE36
Ensembl:ENSCAFT00000021145 GeneID:478192 KEGG:cfa:478192
Uniprot:E2RE36
Length = 633
Score = 433 (157.5 bits), Expect = 1.3e-40, P = 1.3e-40
Identities = 90/280 (32%), Positives = 166/280 (59%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 393
EI+G+ ++ LAKP D+K +++++ + Y
Sbjct: 393 EMNGKEIEGEEIEIVLAKPP-DKKRKERQAARQASRSTAY 431
>UNIPROTKB|O43390 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0006397 "mRNA processing" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Reactome:REACT_1675
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 HOGENOM:HOG000186082
EMBL:AF000364 EMBL:AL109936 EMBL:BC001449 IPI:IPI00012074
IPI:IPI00941649 PIR:T02673 RefSeq:NP_001095867.1
RefSeq:NP_001095868.1 RefSeq:NP_005817.1 UniGene:Hs.373763 PDB:2DK2
PDBsum:2DK2 ProteinModelPortal:O43390 SMR:O43390 IntAct:O43390
MINT:MINT-2796101 STRING:O43390 PhosphoSite:O43390 PaxDb:O43390
PeptideAtlas:O43390 PRIDE:O43390 DNASU:10236
Ensembl:ENST00000302271 Ensembl:ENST00000374612
Ensembl:ENST00000374616 GeneID:10236 KEGG:hsa:10236 UCSC:uc001bgp.4
UCSC:uc001bgr.4 CTD:10236 GeneCards:GC01M023630 HGNC:HGNC:5047
HPA:CAB011687 HPA:HPA026092 MIM:607201 neXtProt:NX_O43390
PharmGKB:PA162391459 KO:K13161 OMA:YYPPPRM PhylomeDB:O43390
ChiTaRS:HNRNPR EvolutionaryTrace:O43390 GenomeRNAi:10236
NextBio:38770 PMAP-CutDB:O43390 ArrayExpress:O43390 Bgee:O43390
CleanEx:HS_HNRNPR Genevestigator:O43390 GermOnline:ENSG00000125944
Uniprot:O43390
Length = 633
Score = 433 (157.5 bits), Expect = 1.3e-40, P = 1.3e-40
Identities = 90/280 (32%), Positives = 166/280 (59%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 393
EI+G+ ++ LAKP D+K +++++ + Y
Sbjct: 393 EMNGKEIEGEEIEIVLAKPP-DKKRKERQAARQASRSTAY 431
>UNIPROTKB|O60506 [details] [associations]
symbol:SYNCRIP "Heterogeneous nuclear ribonucleoprotein Q"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071204 "histone pre-mRNA 3'end processing
complex" evidence=ISS] [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IDA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IMP] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0017148 "negative regulation of translation"
evidence=IDA;IMP] [GO:0071346 "cellular response to
interferon-gamma" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005783 GO:GO:0019048 GO:GO:0005654 GO:GO:0017148
GO:GO:0000166 EMBL:CH471051 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0071346 GO:GO:0000398 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
EMBL:AF155568 EMBL:AF037448 EMBL:AY034481 EMBL:AY034482
EMBL:AY034483 EMBL:AK222776 EMBL:AL136082 EMBL:BC015575
EMBL:BC032643 EMBL:BC040844 IPI:IPI00018140 IPI:IPI00402182
IPI:IPI00402183 IPI:IPI00402184 IPI:IPI00402185
RefSeq:NP_001153145.1 RefSeq:NP_001153146.1 RefSeq:NP_001153147.1
RefSeq:NP_001153148.1 RefSeq:NP_001153149.1 RefSeq:NP_001240700.1
RefSeq:NP_006363.4 UniGene:Hs.571177 PDB:2DGU PDBsum:2DGU
ProteinModelPortal:O60506 SMR:O60506 IntAct:O60506
MINT:MINT-2796763 STRING:O60506 PhosphoSite:O60506 PaxDb:O60506
PRIDE:O60506 DNASU:10492 Ensembl:ENST00000355238
Ensembl:ENST00000369622 GeneID:10492 KEGG:hsa:10492 UCSC:uc003pku.3
UCSC:uc003pkv.3 UCSC:uc003pkw.3 UCSC:uc003pkx.3 UCSC:uc003pkz.2
CTD:10492 GeneCards:GC06M086267 HGNC:HGNC:16918 HPA:CAB010895
neXtProt:NX_O60506 PharmGKB:PA134985065 InParanoid:O60506 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM PhylomeDB:O60506 ChiTaRS:SYNCRIP
EvolutionaryTrace:O60506 GenomeRNAi:10492 NextBio:39814
ArrayExpress:O60506 Bgee:O60506 CleanEx:HS_SYNCRIP
Genevestigator:O60506 GermOnline:ENSG00000135316 Uniprot:O60506
Length = 623
Score = 432 (157.1 bits), Expect = 1.4e-40, P = 1.4e-40
Identities = 93/290 (32%), Positives = 166/290 (57%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPH 396
+++G+ ++ AKP DQK +++A N Y PPH
Sbjct: 390 EMNGKDLEGENIEIVFAKPP-DQKRKERKAQRQAAKNQMYDDYYYYGPPH 438
>UNIPROTKB|F2Z5D4 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:CU076072 Ensembl:ENSSSCT00000004748 Uniprot:F2Z5D4
Length = 627
Score = 432 (157.1 bits), Expect = 1.5e-40, P = 1.5e-40
Identities = 93/290 (32%), Positives = 166/290 (57%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 162 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 221
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 222 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 281
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 282 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 341
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 342 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 393
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPH 396
+++G+ ++ AKP DQK +++A N Y PPH
Sbjct: 394 EMNGKDLEGENIEIVFAKPP-DQKRKERKAQRQAAKNQMYDDYYYYGPPH 442
>RGD|1305683 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=ISO]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISO;ISS] [GO:0071346 "cellular response to
interferon-gamma" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305683 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0005681 GO:GO:0003723
GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160 EMBL:AY325202
IPI:IPI00382222 RefSeq:NP_001041381.1 UniGene:Rn.202606
ProteinModelPortal:Q7TP47 SMR:Q7TP47 IntAct:Q7TP47 STRING:Q7TP47
PhosphoSite:Q7TP47 PRIDE:Q7TP47 Ensembl:ENSRNOT00000041655
GeneID:363113 KEGG:rno:363113 UCSC:RGD:1305683 HOGENOM:HOG000186082
NextBio:682484 ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 93/290 (32%), Positives = 166/290 (57%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 247
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 248 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 299
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPH 396
+++G+ ++ AKP DQK +++A N Y PPH
Sbjct: 300 EMNGKDLEGENIEIVFAKPP-DQKRKERKAQRQAAKNQMYDDYYYYGPPH 348
>UNIPROTKB|Q7TP47 [details] [associations]
symbol:Syncrip "Heterogeneous nuclear ribonucleoprotein Q"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1305683 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
GO:GO:0006397 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005681
GO:GO:0003723 GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160
EMBL:AY325202 IPI:IPI00382222 RefSeq:NP_001041381.1
UniGene:Rn.202606 ProteinModelPortal:Q7TP47 SMR:Q7TP47
IntAct:Q7TP47 STRING:Q7TP47 PhosphoSite:Q7TP47 PRIDE:Q7TP47
Ensembl:ENSRNOT00000041655 GeneID:363113 KEGG:rno:363113
UCSC:RGD:1305683 HOGENOM:HOG000186082 NextBio:682484
ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 93/290 (32%), Positives = 166/290 (57%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 247
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 248 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 299
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPH 396
+++G+ ++ AKP DQK +++A N Y PPH
Sbjct: 300 EMNGKDLEGENIEIVFAKPP-DQKRKERKAQRQAAKNQMYDDYYYYGPPH 348
>UNIPROTKB|F1NWI9 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:AADN02002396 IPI:IPI00680994 Ensembl:ENSGALT00000031678
ArrayExpress:F1NWI9 Uniprot:F1NWI9
Length = 622
Score = 431 (156.8 bits), Expect = 1.7e-40, P = 1.7e-40
Identities = 93/290 (32%), Positives = 166/290 (57%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 157 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 216
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 217 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 276
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 277 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 336
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 337 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 388
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPH 396
+++G+ ++ AKP DQK +++A N Y PPH
Sbjct: 389 EMNGKDLEGENIEIVFAKPP-DQKRKERKAQRQAAKNQMYDDYYYYGPPH 437
>MGI|MGI:1891690 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISO] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IDA] [GO:0071346
"cellular response to interferon-gamma" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1891690 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0071013 GO:GO:0008143
GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 CTD:10492 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM EMBL:AF093821 EMBL:AB035725
EMBL:AK034845 EMBL:AK077588 EMBL:AK078158 EMBL:BC004001
EMBL:BC041148 EMBL:BC050079 EMBL:BC055863 EMBL:BC058807
EMBL:BC080309 EMBL:BC108363 EMBL:AF408434 IPI:IPI00406117
IPI:IPI00406118 RefSeq:NP_062640.2 RefSeq:NP_062770.1
UniGene:Mm.260545 ProteinModelPortal:Q7TMK9 SMR:Q7TMK9
STRING:Q7TMK9 PhosphoSite:Q7TMK9 REPRODUCTION-2DPAGE:IPI00406117
PaxDb:Q7TMK9 PRIDE:Q7TMK9 Ensembl:ENSMUST00000069221
Ensembl:ENSMUST00000173801 Ensembl:ENSMUST00000174282 GeneID:56403
KEGG:mmu:56403 UCSC:uc009qyo.1 UCSC:uc009qyq.1 InParanoid:Q7TMK9
NextBio:312520 Bgee:Q7TMK9 Genevestigator:Q7TMK9
GermOnline:ENSMUSG00000032423 Uniprot:Q7TMK9
Length = 623
Score = 431 (156.8 bits), Expect = 1.8e-40, P = 1.8e-40
Identities = 93/290 (32%), Positives = 166/290 (57%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPH 396
+++G+ ++ AKP DQK +++A N Y PPH
Sbjct: 390 EMNGKDLEGENIEIVFAKPP-DQKRKERKAQRQAAKNQMYDDYYYYGPPH 438
>UNIPROTKB|F1MCT8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:DAAA02026516 EMBL:DAAA02026515 IPI:IPI00721347
Ensembl:ENSBTAT00000008774 Uniprot:F1MCT8
Length = 638
Score = 432 (157.1 bits), Expect = 1.9e-40, P = 1.9e-40
Identities = 93/290 (32%), Positives = 166/290 (57%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 173 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 232
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 233 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 292
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 293 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 352
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 353 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 404
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPH 396
+++G+ ++ AKP DQK +++A N Y PPH
Sbjct: 405 EMNGKDLEGENIEIVFAKPP-DQKRKERKAQRQAAKNQMYDDYYYYGPPH 453
>UNIPROTKB|F1LUZ6 [details] [associations]
symbol:Hnrnpr "Protein Hnrnpr" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:631348 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
IPI:IPI00391659 ProteinModelPortal:F1LUZ6
Ensembl:ENSRNOT00000015971 OMA:MENVERT ArrayExpress:F1LUZ6
Uniprot:F1LUZ6
Length = 381
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 87/259 (33%), Positives = 156/259 (60%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 130 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 189
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 190 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 249
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 250 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 309
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 310 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 361
Query: 354 NTEKYEIDGQVLDCSLAKP 372
EI+G+ ++ LAKP
Sbjct: 362 EMNGKEIEGEEIEIVLAKP 380
>UNIPROTKB|E1BZR1 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 OMA:YYPPPRM EMBL:AADN02051307 EMBL:AADN02051308
IPI:IPI00597410 ProteinModelPortal:E1BZR1
Ensembl:ENSGALT00000001185 ArrayExpress:E1BZR1 Uniprot:E1BZR1
Length = 661
Score = 430 (156.4 bits), Expect = 4.7e-40, P = 4.7e-40
Identities = 88/280 (31%), Positives = 166/280 (59%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF +K+ A
Sbjct: 189 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQ 248
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ ++ E++ GK + + A +RLF+G++P+N ++++ + K+ G++ + L
Sbjct: 249 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFNKVTEGLVDVILYH 308
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 309 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 368
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 369 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMN 420
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 393
EI+G+ ++ LAKP D+K +++++ + Y
Sbjct: 421 EMNGKEIEGEEIEIVLAKPP-DKKRKERQAARQASRSTAY 459
>ZFIN|ZDB-GENE-030131-3104 [details] [associations]
symbol:syncripl "synaptotagmin binding,
cytoplasmic RNA interacting protein, like" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-3104
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GO:GO:0003676 HSSP:P09651
EMBL:BC046902 IPI:IPI00513002 RefSeq:NP_955973.1 UniGene:Dr.78854
ProteinModelPortal:Q802X5 SMR:Q802X5 STRING:Q802X5 GeneID:324384
KEGG:dre:324384 CTD:324384 InParanoid:Q802X5 NextBio:20808747
Uniprot:Q802X5
Length = 560
Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 94/290 (32%), Positives = 161/290 (55%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M SG +GYAFVTF TKE A
Sbjct: 159 PTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQ 218
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ +D + + K+ G+ + L
Sbjct: 219 KAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKVTEGLNDVILYH 278
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+ Y +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 279 QPDDKKKNRGFCFLGYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 338
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F GK+ +V ++ Y F+HF ER A+KAL
Sbjct: 339 KVLFVRNLASTVTEELLEKTFCQFGKLERV--------KKLKDYAFIHFEERDGAVKALA 390
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPH 396
+++G+ ++ AKP DQK +++A Y PPH
Sbjct: 391 ELHGKDLEGEPIEIVFAKPP-DQKRKERKAQRQAAKTQMYDEYYYYGPPH 439
>UNIPROTKB|Q2L7G6 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003676 GO:GO:0030529 EMBL:AL109936 UniGene:Hs.373763
HGNC:HGNC:5047 ChiTaRS:HNRNPR EMBL:DQ351905 IPI:IPI00856038
SMR:Q2L7G6 STRING:Q2L7G6 Ensembl:ENST00000427764 UCSC:uc010odw.2
Uniprot:Q2L7G6
Length = 595
Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 87/275 (31%), Positives = 163/275 (59%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
+V++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A +A++
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 181 LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
+S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYV 298
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+V
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFV 307
Query: 299 KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY 358
+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 308 RNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGK 359
Query: 359 EIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 393
EI+G+ ++ LAKP D+K +++++ + Y
Sbjct: 360 EIEGEEIEIVLAKPP-DKKRKERQAARQASRSTAY 393
Score = 134 (52.2 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 52/195 (26%), Positives = 96/195 (49%)
Query: 185 ELKGKKIKCSAA---QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQ 241
E +G K++ S +AK ++F+G +PR+ ED++ K GP + + L+ DP + Q
Sbjct: 109 EKQGSKVQESTKGPDEAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLSG-Q 166
Query: 242 NRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNL 301
NRG+AFI + C + + Q+ KL D+ + S A+ L+V ++
Sbjct: 167 NRGYAFITF----CGKEAAQEA----VKLCDSYE-IRPGKHLGVCISVANN--RLFVGSI 215
Query: 302 PKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF--VHFAERSSAMKALKN--TEK 357
PK+ T++ + E F+ + VI +P ++ GF + + + SA +A + + K
Sbjct: 216 PKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGK 275
Query: 358 YEIDGQVLDCSLAKP 372
++ G V+ A P
Sbjct: 276 VKVWGNVVTVEWADP 290
>ZFIN|ZDB-GENE-030131-4862 [details] [associations]
symbol:syncrip "synaptotagmin binding, cytoplasmic
RNA interacting protein" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4862 GO:GO:0000166 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
GO:GO:0003676 EMBL:CT573058 IPI:IPI00504625
Ensembl:ENSDART00000129870 Bgee:F1QY96 Uniprot:F1QY96
Length = 694
Score = 418 (152.2 bits), Expect = 1.4e-38, P = 1.4e-38
Identities = 91/282 (32%), Positives = 160/282 (56%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P G+E+++G IP D +D+L + G + ++R+M SG +GYAF+TF TKE
Sbjct: 220 AQPTVGTEIFVGKIPRDLFEDELVPQFEKAGPIWDLRLMMDPLSGLNRGYAFLTFCTKEA 279
Query: 174 ASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
A +A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 280 AQEAVKLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVIL 339
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAAS 291
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + +
Sbjct: 340 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIEDPDPEVMA 399
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+VK L+V+NL +T++ L++ F G + +V ++ Y FVHF +R A+KA
Sbjct: 400 KVKVLFVRNLANSVTEEILEKAFGQFGNLERV--------KKLKDYAFVHFNDRDGAVKA 451
Query: 352 LKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 393
L E++G+ ++ AKP DQK +++A Y
Sbjct: 452 LTEMNGKELEGEHIEIVFAKPP-DQKRKERKAQRQAAKTQMY 492
>WB|WBGene00002000 [details] [associations]
symbol:hrp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0006915 GO:GO:0000166
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0048477 GO:GO:0003676
GO:GO:0040035 HSSP:P09651 EMBL:AL137227 UniGene:Cel.7321
GeneID:173086 KEGG:cel:CELE_F58D5.1 CTD:173086 NextBio:878217
RefSeq:NP_493049.2 ProteinModelPortal:Q9NLD1 SMR:Q9NLD1
DIP:DIP-25792N IntAct:Q9NLD1 MINT:MINT-1104835 STRING:Q9NLD1
PRIDE:Q9NLD1 EnsemblMetazoa:F58D5.1a.1 EnsemblMetazoa:F58D5.1a.2
EnsemblMetazoa:F58D5.1a.3 WormBase:F58D5.1a HOGENOM:HOG000020701
InParanoid:Q9NLD1 OMA:QVLVQFK ArrayExpress:Q9NLD1 Uniprot:Q9NLD1
Length = 611
Score = 387 (141.3 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
Identities = 83/262 (31%), Positives = 150/262 (57%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G E+Y+G IP D +D L + G++ ++R+M SG ++GYAFVT+ KE A+ A
Sbjct: 199 GHEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAA 258
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
+ + E+ GK +K + + A RLFIGN+P+ +D++ + + GV+ + + P
Sbjct: 259 KTYDGHEISTGKPLKVNVSIANTRLFIGNIPKTKSKDEILEELKTHAEGVVDVIVYSVPD 318
Query: 238 NAN-QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQVKA 295
N +NRGF F+++ +H A ++K++ K + + V WA+ + + S+VK
Sbjct: 319 NEKIKNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQEEPDEDTMSKVKV 378
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
LY++N+ + +T+++L ELF + + +V K ++ Y F+HF ER +KA++
Sbjct: 379 LYIRNIKEAVTEEKLNELFKEYASLDRV-----KKVKD---YAFIHFNERDDCLKAMEEW 430
Query: 356 EKYEIDGQVLDCSLAKPQADQK 377
E++G V++ SLAKP ++K
Sbjct: 431 NGKELEGTVVEASLAKPPQEKK 452
Score = 38 (18.4 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 96 KVAESDKDDEKKKHAE 111
K AE+ K +E K+AE
Sbjct: 41 KPAENGKTEEPSKYAE 56
>UNIPROTKB|E1BVJ9 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:AADN02031225 IPI:IPI00588745
RefSeq:XP_003641292.1 UniGene:Gga.25965 ProteinModelPortal:E1BVJ9
Ensembl:ENSGALT00000023079 GeneID:770355 KEGG:gga:770355
Uniprot:E1BVJ9
Length = 597
Score = 399 (145.5 bits), Expect = 6.5e-37, P = 6.5e-37
Identities = 86/259 (33%), Positives = 146/259 (56%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L +S+G + E+R+M D G+ +GYAFV + K A
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL + T+D +K++F G+ + K ++ Y FVHF R A+ A+
Sbjct: 246 KILYVRNLMIETTEDTIKKVF---GQFNPGCVERVKKIRD---YAFVHFTTREDAIHAMN 299
Query: 354 NTEKYEIDGQVLDCSLAKP 372
N E++G L+ +LAKP
Sbjct: 300 NLNGVELEGSCLEVTLAKP 318
>UNIPROTKB|B7Z8Z7 [details] [associations]
symbol:RBM47 "cDNA FLJ51456, moderately similar to APOBEC1
complementation factor" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 UniGene:Hs.518727 HGNC:HGNC:30358 ChiTaRS:RBM47
EMBL:AK304206 IPI:IPI00964320 SMR:B7Z8Z7 STRING:B7Z8Z7
Ensembl:ENST00000514014 Uniprot:B7Z8Z7
Length = 555
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 91/286 (31%), Positives = 156/286 (54%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A
Sbjct: 29 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 87
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 88 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 147
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 148 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 207
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL + T+D +K+ F G+ + K ++ Y FVHF R A+ A+
Sbjct: 208 KILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD---YAFVHFTSREDAVHAMN 261
Query: 354 NTEKYEIDGQVLDCSLAKP----QAD--QKTSGGSNSQKSALNPTY 393
N E++G L+ +LAKP Q QK + G + ++A P+Y
Sbjct: 262 NLNGTELEGSCLEVTLAKPVDKEQYSRYQKAARGGGAAEAAQQPSY 307
>UNIPROTKB|D6R9D6 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965625
ProteinModelPortal:D6R9D6 SMR:D6R9D6 Ensembl:ENST00000510871
ArrayExpress:D6R9D6 Bgee:D6R9D6 Uniprot:D6R9D6
Length = 393
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 91/286 (31%), Positives = 156/286 (54%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL + T+D +K+ F G+ + K ++ Y FVHF R A+ A+
Sbjct: 246 KILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD---YAFVHFTSREDAVHAMN 299
Query: 354 NTEKYEIDGQVLDCSLAKP----QAD--QKTSGGSNSQKSALNPTY 393
N E++G L+ +LAKP Q QK + G + ++A P+Y
Sbjct: 300 NLNGTELEGSCLEVTLAKPVDKEQYSRYQKAARGGGAAEAAQQPSY 345
>UNIPROTKB|A0AV96 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003723 CTD:54502
OrthoDB:EOG4THVTH EMBL:AF261889 EMBL:AF262323 EMBL:AK000280
EMBL:AC098869 EMBL:AC112717 EMBL:BC034402 EMBL:BC126261
IPI:IPI00005042 IPI:IPI00169342 RefSeq:NP_001092104.1
RefSeq:NP_061900.2 UniGene:Hs.518727 PDB:2DIS PDBsum:2DIS
ProteinModelPortal:A0AV96 SMR:A0AV96 IntAct:A0AV96 STRING:A0AV96
PhosphoSite:A0AV96 PaxDb:A0AV96 PRIDE:A0AV96 DNASU:54502
Ensembl:ENST00000295971 Ensembl:ENST00000319592
Ensembl:ENST00000381793 Ensembl:ENST00000381795 GeneID:54502
KEGG:hsa:54502 UCSC:uc003gvc.2 UCSC:uc003gvd.2
GeneCards:GC04M040425 HGNC:HGNC:30358 HPA:HPA006347
neXtProt:NX_A0AV96 PharmGKB:PA162400825 InParanoid:A0AV96
OMA:IGPNREY ChiTaRS:RBM47 EvolutionaryTrace:A0AV96 GenomeRNAi:54502
NextBio:56852 ArrayExpress:A0AV96 Bgee:A0AV96 CleanEx:HS_RBM47
Genevestigator:A0AV96 Uniprot:A0AV96
Length = 593
Score = 393 (143.4 bits), Expect = 3.0e-36, P = 3.0e-36
Identities = 91/286 (31%), Positives = 156/286 (54%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL + T+D +K+ F G+ + K ++ Y FVHF R A+ A+
Sbjct: 246 KILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD---YAFVHFTSREDAVHAMN 299
Query: 354 NTEKYEIDGQVLDCSLAKP----QAD--QKTSGGSNSQKSALNPTY 393
N E++G L+ +LAKP Q QK + G + ++A P+Y
Sbjct: 300 NLNGTELEGSCLEVTLAKPVDKEQYSRYQKAARGGGAAEAAQQPSY 345
>ZFIN|ZDB-GENE-030131-9612 [details] [associations]
symbol:si:ch211-241e15.2 "si:ch211-241e15.2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-9612 GO:GO:0000166
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 EMBL:BX901913
IPI:IPI00886586 Ensembl:ENSDART00000089070 ArrayExpress:F1Q5Y6
Bgee:F1Q5Y6 Uniprot:F1Q5Y6
Length = 601
Score = 392 (143.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 90/280 (32%), Positives = 156/280 (55%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G E+++G IP D +D+L +S+G + E+R+M D G+ +GYAFV + K A
Sbjct: 78 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 136
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + ++ RLFIG +P+ +++ + V+K+ GV+ + +
Sbjct: 137 RAVRELNNFEIRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVLDVIVYA 196
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 197 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 256
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL + +++ L++ F G+ + K ++ Y FVHFA R A+ A+
Sbjct: 257 KILYVRNLMIETSEEILRQTF---GQFNPGCVERVKKIRD---YAFVHFASRDDAVVAMD 310
Query: 354 NTEKYEIDGQVLDCSLAKP-QADQKTSGGSNSQKSALNPT 392
N EI+G ++ +LAKP +Q T S+ +A T
Sbjct: 311 NLNGTEIEGSRIEVTLAKPVDKEQYTRYQKASKGTAAATT 350
>UNIPROTKB|F6RYN2 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:54502 OMA:IGPNREY EMBL:DAAA02017489 IPI:IPI00690190
RefSeq:NP_001192963.1 UniGene:Bt.22438 Ensembl:ENSBTAT00000003040
GeneID:540831 KEGG:bta:540831 NextBio:20878859 Uniprot:F6RYN2
Length = 591
Score = 389 (142.0 bits), Expect = 8.4e-36, P = 8.4e-36
Identities = 92/288 (31%), Positives = 158/288 (54%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAK 125
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL + T+D +K+ F G+ + K ++ Y FVHFA R A+ A+
Sbjct: 246 KILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD---YAFVHFASREDAVHAMN 299
Query: 354 NTEKYEIDGQVLDCSLAKP----QAD--QKTSGGSNSQKSAL--NPTY 393
N E++G L+ +LAKP Q QK + G + ++A+ P+Y
Sbjct: 300 NLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGAAEAAVVQQPSY 347
>UNIPROTKB|F1S4H0 [details] [associations]
symbol:RBM47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:CU929922 RefSeq:XP_003128987.3
Ensembl:ENSSSCT00000009623 GeneID:100513606 KEGG:ssc:100513606
Uniprot:F1S4H0
Length = 591
Score = 389 (142.0 bits), Expect = 8.4e-36, P = 8.4e-36
Identities = 92/288 (31%), Positives = 158/288 (54%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAK 125
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL + T+D +K+ F G+ + K ++ Y FVHFA R A+ A+
Sbjct: 246 KILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD---YAFVHFASREDAVHAMN 299
Query: 354 NTEKYEIDGQVLDCSLAKP----QAD--QKTSGGSNSQKSAL--NPTY 393
N E++G L+ +LAKP Q QK + G + ++A+ P+Y
Sbjct: 300 NLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGAAEAAVVQQPSY 347
>UNIPROTKB|E1B7G9 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:DAAA02058697 EMBL:DAAA02058698 IPI:IPI01002256
RefSeq:XP_003587913.1 ProteinModelPortal:E1B7G9
Ensembl:ENSBTAT00000033157 GeneID:100336715 KEGG:bta:100336715
Uniprot:E1B7G9
Length = 595
Score = 389 (142.0 bits), Expect = 8.9e-36, P = 8.9e-36
Identities = 86/263 (32%), Positives = 148/263 (56%)
Query: 114 ALPPH-GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE 172
A PP G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQ 107
Query: 173 LASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
A AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAA 290
+ + +NRGFAF+EY NH A +R+K+ + +L + V WA+P +
Sbjct: 168 VYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAM 349
S VK LYV+NL +++ +++ F + + P A ++ R Y FVHF R A+
Sbjct: 228 SSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFTNREDAV 280
Query: 350 KALKNTEKYEIDGQVLDCSLAKP 372
+A+K +DG ++ +LAKP
Sbjct: 281 EAMKALNGKVLDGSPIEVTLAKP 303
>UNIPROTKB|F1Q212 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:IGPNREY EMBL:AAEX03002529 EMBL:AAEX03002530
Ensembl:ENSCAFT00000025193 Uniprot:F1Q212
Length = 592
Score = 388 (141.6 bits), Expect = 1.1e-35, P = 1.1e-35
Identities = 91/287 (31%), Positives = 157/287 (54%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFVT+ K A
Sbjct: 69 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAK 127
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 128 RAVRELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 187
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 188 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 247
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL + T+D +K+ F G+ + K ++ Y FVHFA R A+ A+
Sbjct: 248 KILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD---YAFVHFASREDAVLAMN 301
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTS-------GGSNSQKSALNPTY 393
+ E++G L+ +LAKP ++ S GG ++ +A P Y
Sbjct: 302 SLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGAAEAAAPQPGY 348
>UNIPROTKB|Q9XSR3 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 HSSP:Q9NQ94 EMBL:AJ388555 RefSeq:NP_001002955.1
UniGene:Cfa.124 ProteinModelPortal:Q9XSR3 SMR:Q9XSR3 GeneID:403423
KEGG:cfa:403423 CTD:54502 InParanoid:Q9XSR3 OrthoDB:EOG4THVTH
NextBio:20816943 Uniprot:Q9XSR3
Length = 592
Score = 388 (141.6 bits), Expect = 1.1e-35, P = 1.1e-35
Identities = 91/287 (31%), Positives = 157/287 (54%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFVT+ K A
Sbjct: 69 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAK 127
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 128 RAVRELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 187
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 188 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 247
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL + T+D +K+ F G+ + K ++ Y FVHFA R A+ A+
Sbjct: 248 KILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD---YAFVHFASREDAVLAMN 301
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTS-------GGSNSQKSALNPTY 393
+ E++G L+ +LAKP ++ S GG ++ +A P Y
Sbjct: 302 SLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGAAEAAAPQPGY 348
>UNIPROTKB|F1SD00 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:CT954228
Ensembl:ENSSSCT00000011416 Uniprot:F1SD00
Length = 546
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 85/263 (32%), Positives = 148/263 (56%)
Query: 114 ALPPH-GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE 172
A PP G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQ 107
Query: 173 LASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
A AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAA 290
+ + +NRGFAF+EY +H A +R+K+ + +L + V WA+P +
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAM 349
S VK LYV+NL +++ +++ F + + P A ++ R Y FVHF R A+
Sbjct: 228 SSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFTNREDAV 280
Query: 350 KALKNTEKYEIDGQVLDCSLAKP 372
+A+K +DG ++ +LAKP
Sbjct: 281 EAMKALNGKVLDGSPIEVTLAKP 303
>UNIPROTKB|E2QVD3 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 ProteinModelPortal:E2QVD3
Ensembl:ENSCAFT00000004869 Uniprot:E2QVD3
Length = 622
Score = 388 (141.6 bits), Expect = 1.6e-35, P = 1.6e-35
Identities = 79/239 (33%), Positives = 142/239 (59%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+K +
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKVI 388
>UNIPROTKB|E1BQR8 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0030895 "apolipoprotein B mRNA editing enzyme
complex" evidence=IEA] [GO:0050821 "protein stabilization"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720 GO:GO:0050821
GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:AADN02035165
IPI:IPI00576681 ProteinModelPortal:E1BQR8
Ensembl:ENSGALT00000005974 Uniprot:E1BQR8
Length = 540
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 83/259 (32%), Positives = 145/259 (55%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAR 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL T++ +++ F I + + K ++ Y FVHF +R A+ A+K
Sbjct: 231 KILYVRNLMLSTTEETIEKEF---NNIKQGAVERVKKIRD---YAFVHFNKREDAVHAMK 284
Query: 354 NTEKYEIDGQVLDCSLAKP 372
+DG ++ +LAKP
Sbjct: 285 ALNGKVLDGSPIEVTLAKP 303
>RGD|619834 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=ISO;ISS]
[GO:0003727 "single-stranded RNA binding" evidence=ISO;ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0004131 "cytosine
deaminase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005720 "nuclear heterochromatin" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=NAS;IMP]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;ISS;TAS] [GO:0050821 "protein stabilization"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
RGD:619834 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821 GO:GO:0000166
CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895 GO:GO:0005720
GO:GO:0004131 GO:GO:0003729 GO:GO:0003727 GO:GO:0016554
GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC EMBL:AF290984 EMBL:AF442133
EMBL:AF442134 EMBL:AF442135 EMBL:AY028945 IPI:IPI00382071
IPI:IPI00679207 IPI:IPI00679214 IPI:IPI00679221 RefSeq:NP_596891.1
UniGene:Rn.162520 ProteinModelPortal:Q923K9 SMR:Q923K9
STRING:Q923K9 PhosphoSite:Q923K9 PRIDE:Q923K9
Ensembl:ENSRNOT00000052256 GeneID:170912 KEGG:rno:170912
UCSC:RGD:619834 eggNOG:NOG246793 InParanoid:Q923K9 OMA:HAGVHHI
NextBio:621377 ArrayExpress:Q923K9 Genevestigator:Q923K9
Uniprot:Q923K9
Length = 594
Score = 384 (140.2 bits), Expect = 3.3e-35, P = 3.3e-35
Identities = 87/285 (30%), Positives = 156/285 (54%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+++ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL +++ +++ F I + K ++ Y FVHF+ R A++A+K
Sbjct: 231 KILYVRNLMLSTSEEMIEKEF---NSIKPGAVERVKKIRD---YAFVHFSNREDAVEAMK 284
Query: 354 NTEKYEIDGQVLDCSLAKP-QADQ--KTSGGSNSQKSALNP-TYP 394
+DG ++ +LAKP D + + G+ + + L TYP
Sbjct: 285 ALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRNTMLQEYTYP 329
>UNIPROTKB|F1LNL0 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 RGD:619834 GO:GO:0050821 GO:GO:0000166
GO:GO:0030895 GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
IPI:IPI00679207 Ensembl:ENSRNOT00000067643 ArrayExpress:F1LNL0
Uniprot:F1LNL0
Length = 594
Score = 384 (140.2 bits), Expect = 3.3e-35, P = 3.3e-35
Identities = 87/285 (30%), Positives = 156/285 (54%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+++ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL +++ +++ F I + K ++ Y FVHF+ R A++A+K
Sbjct: 231 KILYVRNLMLSTSEEMIEKEF---NSIKPGAVERVKKIRD---YAFVHFSNREDAVEAMK 284
Query: 354 NTEKYEIDGQVLDCSLAKP-QADQ--KTSGGSNSQKSALNP-TYP 394
+DG ++ +LAKP D + + G+ + + L TYP
Sbjct: 285 ALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRNTMLQEYTYP 329
>UNIPROTKB|E1BV69 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YPGTKLT EMBL:AADN02016545 IPI:IPI00595715
ProteinModelPortal:E1BV69 Ensembl:ENSGALT00000015094 Uniprot:E1BV69
Length = 467
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 92/265 (34%), Positives = 147/265 (55%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP + +D+L + G++ E+R+M + SGE +G+AFV + TKE A
Sbjct: 57 PPRGCEVFVGKIPRNIYEDELVPLFERAGKIYELRLMM-EFSGENRGFAFVMYTTKEDAQ 115
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI+ LN+ E++ G+ I + RLFIG +PR ++++ K + +I GV+ + +
Sbjct: 116 LAIKILNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRITEGVVDVIVCP 175
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
D + +NRGFAF+EY +H A +R+++ F+L A V WA P + ++ +V
Sbjct: 176 DATDRTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKEVDAETMRRV 235
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL T+D +K A K V+ K ++ Y FVHF R A+ A+
Sbjct: 236 KVLYVRNLMISTTEDTIK---AEFNKFKPRVVERVKKLRD---YAFVHFYNREDAVAAMS 289
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 290 IMNGKCIDGASIEVTLAKPVNKEST 314
>ZFIN|ZDB-GENE-061013-298 [details] [associations]
symbol:rbm46 "RNA binding motif protein 46"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-061013-298
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:BC124720 IPI:IPI00610686 RefSeq:NP_001073493.2
UniGene:Dr.132665 ProteinModelPortal:Q08BH5 SMR:Q08BH5
GeneID:566042 KEGG:dre:566042 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW NextBio:20887996 ArrayExpress:Q08BH5
Uniprot:Q08BH5
Length = 510
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 86/261 (32%), Positives = 150/261 (57%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L + G + E R+M + SGE +GYAFV + T+E A
Sbjct: 41 PPRGREVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMM-EFSGENRGYAFVMYTTREKAQ 99
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+AI+ L++ E++ GK I + RLFIG++P++ ++++++ + K+ GV+ + +
Sbjct: 100 RAIQLLDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYP 159
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ F+L + V WA+P + + +V
Sbjct: 160 SAVDRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEETMQRV 219
Query: 294 KALYVKNLPKDITQDRLKELFAH--HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+ LYV+NL T++ L+ F+ G + +V ++ + Y F+HF R A+ A
Sbjct: 220 RVLYVRNLMLSTTEETLRSEFSQLKPGSVERV--------KKLTDYAFIHFYNREDALTA 271
Query: 352 LKNTEKYEIDGQVLDCSLAKP 372
L++ IDG ++ +LAKP
Sbjct: 272 LESMNGKVIDGSPIEVTLAKP 292
>MGI|MGI:2384294 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2384294 GO:GO:0005634 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 HSSP:Q9NQ94 CTD:54502
OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:AK035620 EMBL:AK085733
EMBL:AK142584 EMBL:AK170082 EMBL:BC013481 EMBL:BC034195
EMBL:BC112902 IPI:IPI00128377 IPI:IPI00265759 RefSeq:NP_001120854.1
RefSeq:NP_620704.1 RefSeq:NP_848541.2 UniGene:Mm.36863
UniGene:Mm.400185 UniGene:Mm.426431 ProteinModelPortal:Q91WT8
SMR:Q91WT8 PhosphoSite:Q91WT8 PaxDb:Q91WT8 PRIDE:Q91WT8
Ensembl:ENSMUST00000094756 Ensembl:ENSMUST00000094757
Ensembl:ENSMUST00000113724 Ensembl:ENSMUST00000113726
Ensembl:ENSMUST00000167950 GeneID:245945 KEGG:mmu:245945
UCSC:uc008xok.2 UCSC:uc008xop.2 InParanoid:Q91WT8 NextBio:387022
Bgee:Q91WT8 CleanEx:MM_RBM47 Genevestigator:Q91WT8 Uniprot:Q91WT8
Length = 590
Score = 383 (139.9 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 89/288 (30%), Positives = 156/288 (54%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + + RLFIG +P+ ++ + + K+ GV+++ +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYA 185
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTV 245
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL + T++ +K+ F G+ + K ++ Y FVHF R A+ A+
Sbjct: 246 KILYVRNLMIETTEETIKKSF---GQFNPGCVERVKKIRD---YAFVHFTSREDAVHAMN 299
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTS--------GGSNSQKSALNPTY 393
N E++G L+ +LAKP ++ S GG +++ A P+Y
Sbjct: 300 NLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSY 347
>MGI|MGI:1917115 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0004131
"cytosine deaminase activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005720 "nuclear heterochromatin" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=ISO]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;TAS] [GO:0050821 "protein stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 InterPro:IPR014720 MGI:MGI:1917115 GO:GO:0005783
GO:GO:0005737 GO:GO:0050821 GO:GO:0000166 CTD:29974
eggNOG:NOG258596 HOVERGEN:HBG051917 OMA:PGYAVPN GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:AY566862 EMBL:AY566863
EMBL:AY566864 EMBL:AC117816 EMBL:AC125019 EMBL:BC089622
IPI:IPI00357048 IPI:IPI00665782 IPI:IPI00667120
RefSeq:NP_001074543.1 UniGene:Mm.87538 ProteinModelPortal:Q5YD48
SMR:Q5YD48 STRING:Q5YD48 PhosphoSite:Q5YD48 PaxDb:Q5YD48
PRIDE:Q5YD48 Ensembl:ENSMUST00000075838 GeneID:69865 KEGG:mmu:69865
UCSC:uc008het.1 UCSC:uc008heu.1 UCSC:uc008hev.1
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 InParanoid:Q5YD48
OrthoDB:EOG4SXNCC NextBio:330501 Bgee:Q5YD48 CleanEx:MM_A1CF
Genevestigator:Q5YD48 GermOnline:ENSMUSG00000052595 Uniprot:Q5YD48
Length = 595
Score = 383 (139.9 bits), Expect = 4.3e-35, P = 4.3e-35
Identities = 88/287 (30%), Positives = 155/287 (54%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+++ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL +++ +++ F I + K ++ Y FVHF+ R A++A+K
Sbjct: 231 KILYVRNLMLSTSEEMIEKEF---NSIKPGAVERVKKIRD---YAFVHFSNREDAVEAMK 284
Query: 354 NTEKYEIDGQVLDCSLAKP-QADQ-----KTSGGSNSQKSALNPTYP 394
+DG ++ +LAKP D + +GG N+ TYP
Sbjct: 285 ALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRNTMLQG-EYTYP 330
>UNIPROTKB|F8W9F8 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0005737 GO:GO:0000166 EMBL:AL512366 EMBL:AL589794
IPI:IPI00981528 HGNC:HGNC:24086 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 ProteinModelPortal:F8W9F8 SMR:F8W9F8
Ensembl:ENST00000395489 UCSC:uc010qho.2 ArrayExpress:F8W9F8
Bgee:F8W9F8 Uniprot:F8W9F8
Length = 587
Score = 382 (139.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 85/263 (32%), Positives = 148/263 (56%)
Query: 114 ALPPH-GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE 172
A PP G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K
Sbjct: 42 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKV 100
Query: 173 LASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
A AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ +
Sbjct: 101 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 160
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAA 290
+ + +NRGFAF+EY +H A +R+K+ + +L + V WA+P +
Sbjct: 161 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTM 220
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAM 349
S VK LYV+NL +++ +++ F + + P A ++ R Y FVHF+ R A+
Sbjct: 221 SSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAV 273
Query: 350 KALKNTEKYEIDGQVLDCSLAKP 372
+A+K +DG ++ +LAKP
Sbjct: 274 EAMKALNGKVLDGSPIEVTLAKP 296
>RGD|1359713 [details] [associations]
symbol:Rbm47 "RNA binding motif protein 47" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359713 GO:GO:0005634
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 GO:GO:0003723
HSSP:Q9NQ94 CTD:54502 OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:BC081995
IPI:IPI00196127 RefSeq:NP_001005882.1 UniGene:Rn.38803
ProteinModelPortal:Q66H68 SMR:Q66H68 PRIDE:Q66H68
Ensembl:ENSRNOT00000003327 GeneID:305340 KEGG:rno:305340
UCSC:RGD:1359713 InParanoid:Q66H68 NextBio:654387
Genevestigator:Q66H68 Uniprot:Q66H68
Length = 590
Score = 382 (139.5 bits), Expect = 5.3e-35, P = 5.3e-35
Identities = 89/288 (30%), Positives = 155/288 (53%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + + RLFIG +P+ ++ + + K+ GV+++ +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYA 185
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTV 245
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL + T++ +K F G+ + K ++ Y FVHF R A+ A+
Sbjct: 246 KILYVRNLMIETTEETIKRSF---GQFNPGCVERVKKIRD---YAFVHFTSREDAVHAMN 299
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTS--------GGSNSQKSALNPTY 393
N E++G L+ +LAKP ++ S GG +++ A P+Y
Sbjct: 300 NLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSY 347
>UNIPROTKB|Q9NQ94 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0030895 "apolipoprotein B
mRNA editing enzyme complex" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0050821 "protein stabilization" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016554 "cytidine
to uridine editing" evidence=TAS] [GO:0016556 "mRNA modification"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0010467
GO:GO:0050821 GO:GO:0005654 GO:GO:0000166 EMBL:AJ272078
EMBL:AJ272079 EMBL:AF209192 EMBL:AF271789 EMBL:AF271790
EMBL:AK000324 EMBL:AK291982 EMBL:AL512366 EMBL:AL589794
EMBL:CH471083 EMBL:BC130519 EMBL:BC144196 IPI:IPI00071360
IPI:IPI00148257 IPI:IPI00299499 IPI:IPI00657723 IPI:IPI00657770
IPI:IPI00981528 RefSeq:NP_001185747.1 RefSeq:NP_001185748.1
RefSeq:NP_001185749.1 RefSeq:NP_055391.2 RefSeq:NP_620310.1
RefSeq:NP_620311.1 UniGene:Hs.282795 PDB:2CPD PDBsum:2CPD
ProteinModelPortal:Q9NQ94 SMR:Q9NQ94 IntAct:Q9NQ94 STRING:Q9NQ94
PhosphoSite:Q9NQ94 DMDM:74761651 PaxDb:Q9NQ94 PRIDE:Q9NQ94
Ensembl:ENST00000282641 Ensembl:ENST00000373993
Ensembl:ENST00000373995 Ensembl:ENST00000373997
Ensembl:ENST00000374001 Ensembl:ENST00000395495 GeneID:29974
KEGG:hsa:29974 UCSC:uc001jjh.3 UCSC:uc001jji.3 UCSC:uc001jjj.3
CTD:29974 GeneCards:GC10M052566 HGNC:HGNC:24086 HPA:HPA037779
neXtProt:NX_Q9NQ94 PharmGKB:PA162375098 eggNOG:NOG258596
HOVERGEN:HBG051917 InParanoid:Q9NQ94 OMA:PGYAVPN PhylomeDB:Q9NQ94
Reactome:REACT_1675 EvolutionaryTrace:Q9NQ94 GenomeRNAi:29974
NextBio:52719 ArrayExpress:Q9NQ94 Bgee:Q9NQ94 CleanEx:HS_A1CF
Genevestigator:Q9NQ94 GermOnline:ENSG00000148584 GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
Uniprot:Q9NQ94
Length = 594
Score = 382 (139.5 bits), Expect = 5.6e-35, P = 5.6e-35
Identities = 85/263 (32%), Positives = 148/263 (56%)
Query: 114 ALPPH-GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE 172
A PP G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKV 107
Query: 173 LASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
A AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAA 290
+ + +NRGFAF+EY +H A +R+K+ + +L + V WA+P +
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTM 227
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAM 349
S VK LYV+NL +++ +++ F + + P A ++ R Y FVHF+ R A+
Sbjct: 228 SSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAV 280
Query: 350 KALKNTEKYEIDGQVLDCSLAKP 372
+A+K +DG ++ +LAKP
Sbjct: 281 EAMKALNGKVLDGSPIEVTLAKP 303
>UNIPROTKB|E2QWK5 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:AAEX03014929 RefSeq:XP_534776.2 ProteinModelPortal:E2QWK5
Ensembl:ENSCAFT00000024715 GeneID:477581 KEGG:cfa:477581
Uniprot:E2QWK5
Length = 590
Score = 381 (139.2 bits), Expect = 6.8e-35, P = 6.8e-35
Identities = 89/287 (31%), Positives = 158/287 (55%)
Query: 114 ALPPH-GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE 172
A PP G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF ++
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNRQ 107
Query: 173 LASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
A AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ +
Sbjct: 108 EAKDAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGVVDVI 167
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAA 290
+ + +NRGFAF+EY +H A +R+K+ + +L + V WA+P +
Sbjct: 168 VYPSAADKTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAM 349
S VK LYV+NL +++ +++ F + + P A ++ R Y FVHF+ R A+
Sbjct: 228 SSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAV 280
Query: 350 KALKNTEKYEIDGQVLDCSLAKP-QADQ--KTSGGSNSQKSALNPTY 393
+A+K +DG ++ +LAKP D + + G+ + S L Y
Sbjct: 281 EAMKALNGKMLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGSMLQGEY 327
>UNIPROTKB|E2R8F4 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:AAEX03010068 RefSeq:XP_532699.1
ProteinModelPortal:E2R8F4 Ensembl:ENSCAFT00000013439 GeneID:475475
KEGG:cfa:475475 NextBio:20851314 Uniprot:E2R8F4
Length = 533
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 91/265 (34%), Positives = 142/265 (53%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQ 115
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ F+L + V WADP + + +V
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRV 235
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL T++ +K A K + K ++ Y FVHF R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIK---AEFNKFKPGAVERVKKLRD---YAFVHFFNREDAVAAMS 289
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>UNIPROTKB|E2RTF9 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AAEX03010068 Ensembl:ENSCAFT00000037016 Uniprot:E2RTF9
Length = 485
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 91/265 (34%), Positives = 142/265 (53%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQ 115
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ F+L + V WADP + + +V
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRV 235
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL T++ +K A K + K ++ Y FVHF R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIK---AEFNKFKPGAVERVKKLRD---YAFVHFFNREDAVAAMS 289
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>UNIPROTKB|B3KWU8 [details] [associations]
symbol:RBM46 "Putative uncharacterized protein MGC27016"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 EMBL:CH471056 CTD:166863 RefSeq:NP_659416.1
UniGene:Hs.133095 GeneID:166863 KEGG:hsa:166863 HGNC:HGNC:28401
PharmGKB:PA162400810 GenomeRNAi:166863 NextBio:88637 EMBL:AC009567
EMBL:AK125877 IPI:IPI00967774 SMR:B3KWU8 STRING:B3KWU8
Ensembl:ENST00000510397 UCSC:uc003iop.1 Uniprot:B3KWU8
Length = 470
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 91/265 (34%), Positives = 142/265 (53%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQ 115
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ F+L + V WADP + + +V
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRV 235
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL T++ +K A K + K ++ Y FVHF R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIK---AEFNKFKPGAVERVKKLRD---YAFVHFFNREDAVAAMS 289
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>UNIPROTKB|B4DZ27 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 UniGene:Hs.133095 HGNC:HGNC:28401 EMBL:AC009567
EMBL:AK302720 IPI:IPI00967437 SMR:B4DZ27 STRING:B4DZ27
Ensembl:ENST00000514866 UCSC:uc011cim.1 Uniprot:B4DZ27
Length = 485
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 91/265 (34%), Positives = 142/265 (53%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQ 115
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ F+L + V WADP + + +V
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRV 235
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL T++ +K A K + K ++ Y FVHF R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIK---AEFNKFKPGAVERVKKLRD---YAFVHFFNREDAVAAMS 289
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>UNIPROTKB|Q8TBY0 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:CH471056 CTD:166863 eggNOG:NOG235650
EMBL:BC028588 IPI:IPI00152304 RefSeq:NP_659416.1 UniGene:Hs.133095
HSSP:Q9NQ94 ProteinModelPortal:Q8TBY0 SMR:Q8TBY0 STRING:Q8TBY0
PhosphoSite:Q8TBY0 DMDM:74760436 PaxDb:Q8TBY0 PRIDE:Q8TBY0
Ensembl:ENST00000281722 GeneID:166863 KEGG:hsa:166863
UCSC:uc003ioo.3 GeneCards:GC04P155702 HGNC:HGNC:28401 HPA:HPA050601
neXtProt:NX_Q8TBY0 PharmGKB:PA162400810 InParanoid:Q8TBY0
OMA:YPGTKLT PhylomeDB:Q8TBY0 GenomeRNAi:166863 NextBio:88637
ArrayExpress:Q8TBY0 Bgee:Q8TBY0 CleanEx:HS_RBM46
Genevestigator:Q8TBY0 Uniprot:Q8TBY0
Length = 533
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 91/265 (34%), Positives = 142/265 (53%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQ 115
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ F+L + V WADP + + +V
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRV 235
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL T++ +K A K + K ++ Y FVHF R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIK---AEFNKFKPGAVERVKKLRD---YAFVHFFNREDAVAAMS 289
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>UNIPROTKB|F1RYR7 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:CU855658 RefSeq:XP_003129173.1
UniGene:Ssc.94502 Ensembl:ENSSSCT00000009851 GeneID:100513804
KEGG:ssc:100513804 Uniprot:F1RYR7
Length = 533
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 91/265 (34%), Positives = 142/265 (53%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQ 115
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ F+L + V WADP + + +V
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRV 235
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL T++ +K A K + K ++ Y FVHF R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIK---AEFNKFKPGAVERVKKLRD---YAFVHFFNREDAVAAMS 289
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>MGI|MGI:3645057 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:3645057 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW OMA:YPGTKLT EMBL:AC158935 IPI:IPI00672754
RefSeq:NP_001139800.1 UniGene:Mm.265114 ProteinModelPortal:P86049
SMR:P86049 PhosphoSite:P86049 PaxDb:P86049 PRIDE:P86049
Ensembl:ENSMUST00000048647 GeneID:633285 KEGG:mmu:633285
UCSC:uc012cqu.1 NextBio:422664 Bgee:P86049 Genevestigator:P86049
Uniprot:P86049
Length = 533
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 91/265 (34%), Positives = 143/265 (53%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQ 115
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ F+L + V WADP + + +V
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRV 235
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL T++ +K F+ K + K ++ Y FVHF R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIKAEFS---KFKPGAVERVKKLRD---YAFVHFFHREDAVAAMS 289
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>RGD|1560205 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1560205 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OrthoDB:EOG4FR0RW OMA:YPGTKLT IPI:IPI00368354
RefSeq:NP_001129189.1 UniGene:Rn.145040 ProteinModelPortal:D3ZAE2
Ensembl:ENSRNOT00000035846 GeneID:310548 KEGG:rno:310548
UCSC:RGD:1560205 NextBio:662134 Uniprot:D3ZAE2
Length = 533
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 91/265 (34%), Positives = 142/265 (53%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQ 115
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ F+L + V WADP + + +V
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRV 235
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL T++ +K A K + K ++ Y FVHF R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIK---AEFNKFKPGAVERVKKLRD---YAFVHFFNREDAVAAMS 289
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>UNIPROTKB|Q5R9H4 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9601
"Pongo abelii" [GO:0003727 "single-stranded RNA binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0030895
"apolipoprotein B mRNA editing enzyme complex" evidence=ISS]
[GO:0050821 "protein stabilization" evidence=ISS] [GO:0003725
"double-stranded RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821
GO:GO:0000166 CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895
GO:GO:0003727 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:CR859414
RefSeq:NP_001127437.1 UniGene:Pab.12059 ProteinModelPortal:Q5R9H4
SMR:Q5R9H4 GeneID:100174508 KEGG:pon:100174508 InParanoid:Q5R9H4
Uniprot:Q5R9H4
Length = 587
Score = 380 (138.8 bits), Expect = 8.5e-35, P = 8.5e-35
Identities = 85/263 (32%), Positives = 148/263 (56%)
Query: 114 ALPPH-GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE 172
A PP G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKL 107
Query: 173 LASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
A AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAA 290
+ + +NRGFAF+EY +H A +R+K+ + +L + V WA+P +
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAM 349
S VK LYV+NL +++ +++ F + + P A ++ R Y FVHF+ R A+
Sbjct: 228 SSVKILYVRNLMLSTSEEMIEKEFNN-------IKPGAVERVKKIRDYAFVHFSNREDAV 280
Query: 350 KALKNTEKYEIDGQVLDCSLAKP 372
+A+K +DG ++ +LAKP
Sbjct: 281 EAMKALNGKVLDGSPIEVTLAKP 303
>ZFIN|ZDB-GENE-060824-3 [details] [associations]
symbol:a1cf "apobec1 complementation factor"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001159 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50137 SMART:SM00360
InterPro:IPR014720 ZFIN:ZDB-GENE-060824-3 GO:GO:0000166
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005622
GO:GO:0003725 EMBL:BX248126 IPI:IPI00486366
Ensembl:ENSDART00000010358 Bgee:E7F6B7 Uniprot:E7F6B7
Length = 588
Score = 379 (138.5 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 83/259 (32%), Positives = 144/259 (55%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P GSE+++G +P D +D+L C+ G++ EVR+M + G +GYAFVTF TK+ A
Sbjct: 52 PERGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFN-GNNRGYAFVTFSTKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
A+++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVLDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY H A +R+K+ + +L + V WA+P + + V
Sbjct: 171 SAADKAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMATV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL T++ +++ F I + K ++ Y FVHF++R A+ A+
Sbjct: 231 KILYVRNLMLPTTEETIEKEF---NSIKPGAVERVKKIRD---YAFVHFSQREDAINAMN 284
Query: 354 NTEKYEIDGQVLDCSLAKP 372
IDG ++ +LAKP
Sbjct: 285 ALNGKVIDGSPIEVTLAKP 303
>UNIPROTKB|E1BB24 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:DAAA02044105 EMBL:DAAA02044106
IPI:IPI00711895 RefSeq:NP_001179648.1 UniGene:Bt.52151
ProteinModelPortal:E1BB24 Ensembl:ENSBTAT00000002223 GeneID:532175
KEGG:bta:532175 NextBio:20875624 Uniprot:E1BB24
Length = 533
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 91/265 (34%), Positives = 142/265 (53%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQ 115
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ F+L + V WADP + + +V
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRV 235
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL T++ +K A K + K ++ Y FVHF R A+ A+
Sbjct: 236 KVLYVRNLMISTTEETIK---AEFNKFKPGSVERVKKLRD---YAFVHFFNREDAVAAMS 289
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>TAIR|locus:2042366 [details] [associations]
symbol:AT2G44710 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 EMBL:AY091781 EMBL:BT000637
IPI:IPI00540100 RefSeq:NP_850422.1 UniGene:At.27807
ProteinModelPortal:Q8RWQ1 SMR:Q8RWQ1 IntAct:Q8RWQ1 STRING:Q8RWQ1
PRIDE:Q8RWQ1 EnsemblPlants:AT2G44710.1 GeneID:819079
KEGG:ath:AT2G44710 TAIR:At2g44710 InParanoid:Q8RWQ1 OMA:EGEGYEN
PhylomeDB:Q8RWQ1 ProtClustDB:CLSN2722610 Genevestigator:Q8RWQ1
Uniprot:Q8RWQ1
Length = 809
Score = 360 (131.8 bits), Expect = 5.0e-32, P = 5.0e-32
Identities = 93/304 (30%), Positives = 162/304 (53%)
Query: 93 EEMKVAESDKDDEKKKHAELL--ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVR 150
EE+K E+ D E+++H ++L E+++G + AS++DL+ +GEVTEVR
Sbjct: 186 EEVKHGET-VDVEEEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVR 244
Query: 151 IMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRN 210
I+K + ++KG AF+ F T E A +A++EL S + GKK +A+Q LF+GN+ +
Sbjct: 245 ILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVGNICKI 304
Query: 211 WGEDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK 269
W + +R+ + G + I LV+D N N NRG+AF+E+ + + A + +++
Sbjct: 305 WTPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDVM 364
Query: 270 LDDNAPT-VSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPP 327
P VS+ D + E +QVK +++ L ++R+++L +GK+ KV +
Sbjct: 365 FGVEKPAKVSFTDSFLDLEDEIMAQVKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELAR 424
Query: 328 AKPGQERSRYGFVHFAERSSAM---KALKNTEKYEIDGQV-LDCSLAKPQADQKTSGGSN 383
P R +GFV F +A+ K + N+E E + + + L++P QK G
Sbjct: 425 NMPSARRKDFGFVTFDTHEAAVSCAKFINNSELGEGEDKAKVRARLSRPL--QKAGKGRQ 482
Query: 384 SQKS 387
S +S
Sbjct: 483 SSRS 486
>DICTYBASE|DDB_G0282293 [details] [associations]
symbol:rnpA "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0282293 GO:GO:0000166
EMBL:AAFI02000047 GenomeReviews:CM000152_GR Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AY392444 RefSeq:XP_640243.1
ProteinModelPortal:Q6TMI9 EnsemblProtists:DDB0214833 GeneID:8623503
KEGG:ddi:DDB_G0282293 InParanoid:Q6TMI9 OMA:LTVNWSD Uniprot:Q6TMI9
Length = 551
Score = 304 (112.1 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
Identities = 68/229 (29%), Positives = 120/229 (52%)
Query: 90 DGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCK--SIGEVT 147
DGD + + ++ K + +E++ GG+ ++++L S V
Sbjct: 69 DGDNNISINNNNNSISKSQRNA-------NNEIFFGGVNKTVNEEELLEIFNENSDNNVL 121
Query: 148 EVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNV 207
E+R+MK K +GE+KG+ FV F + + I++LN +KGK I+ ++ K +LFIGN+
Sbjct: 122 EIRLMKDKLTGESKGFGFVLFNDRSMCRNVIDKLNGKSIKGKIIEVKQSENKRKLFIGNL 181
Query: 208 PRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 267
P++ ++ + G+ SI+ + P N+NRGFAFIEY +H A+ +R+ ++
Sbjct: 182 PKDLSKEQFISIFNEKTEGIESIDFLMSPDQPNKNRGFAFIEYQDHYLADTARRILTAST 241
Query: 268 FKLDD--NAPTVSWADPRNAESSAAS------QVKALYVKNLPKDITQD 308
KL D TV+W+DP + ++KA+Y++NLP + D
Sbjct: 242 VKLGDYITTLTVNWSDPDPTTLDPQNDPLENKEIKAIYIRNLPLNHRND 290
Score = 71 (30.1 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 337 YGFVHFAERSSAMKALK-NTEK-YEIDGQVLDCSLAKP-----QADQ---KTSGGSNSQK 386
Y FVH R A + L+ + EK I+G+VL S AKP ++D+ K SN+QK
Sbjct: 361 YAFVHLKTRELAEEILRIHEEKPININGKVLSLSFAKPIDKKLRSDKIQRKLQRISNNQK 420
Query: 387 SALN 390
+ LN
Sbjct: 421 NNLN 424
>UNIPROTKB|F1NJQ8 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AADN02016545 IPI:IPI00822755 ProteinModelPortal:F1NJQ8
Ensembl:ENSGALT00000038887 Uniprot:F1NJQ8
Length = 414
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 84/248 (33%), Positives = 136/248 (54%)
Query: 133 DDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKI 191
+D+L + G++ E+R+M + SGE +G+AFV + TKE A AI+ LN+ E++ G+ I
Sbjct: 3 EDELVPLFERAGKIYELRLMM-EFSGENRGFAFVMYTTKEDAQLAIKILNNYEIRPGRFI 61
Query: 192 KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYY 251
+ RLFIG +PR ++++ K + +I GV+ + + D + +NRGFAF+EY
Sbjct: 62 GVCISLDNCRLFIGAIPREKKKEEILKEMKRITEGVVDVIVCPDATDRTKNRGFAFVEYE 121
Query: 252 NHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRL 310
+H A +R+++ F+L A V WA P + ++ +VK LYV+NL T+D +
Sbjct: 122 SHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKEVDAETMRRVKVLYVRNLMISTTEDTI 181
Query: 311 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370
K A K V+ K ++ Y FVHF R A+ A+ IDG ++ +LA
Sbjct: 182 K---AEFNKFKPRVVERVKKLRD---YAFVHFYNREDAVAAMSIMNGKCIDGASIEVTLA 235
Query: 371 KPQADQKT 378
KP + T
Sbjct: 236 KPVNKEST 243
>UNIPROTKB|E7ETM7 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 EMBL:AL109936 HGNC:HGNC:5047
ChiTaRS:HNRNPR IPI:IPI00910614 ProteinModelPortal:E7ETM7 SMR:E7ETM7
Ensembl:ENST00000426846 UCSC:uc010odx.2 ArrayExpress:E7ETM7
Bgee:E7ETM7 Uniprot:E7ETM7
Length = 473
Score = 313 (115.2 bits), Expect = 7.2e-28, P = 7.2e-28
Identities = 66/216 (30%), Positives = 126/216 (58%)
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
E +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 65 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 124
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+
Sbjct: 125 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLF 184
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357
V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 185 VRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNG 236
Query: 358 YEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 393
EI+G+ ++ LAKP D+K +++++ + Y
Sbjct: 237 KEIEGEEIEIVLAKPP-DKKRKERQAARQASRSTAY 271
>UNIPROTKB|F1LM17 [details] [associations]
symbol:F1LM17 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 IPI:IPI00564342 PRIDE:F1LM17
Ensembl:ENSRNOT00000040711 Uniprot:F1LM17
Length = 440
Score = 284 (105.0 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 73/253 (28%), Positives = 132/253 (52%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+ D +D+L + G V +R+M G+ +GYAF+TF KE A ++ +SCE+
Sbjct: 1 VQRDLYEDELVPLFEKAGPVWSLRLMMDP-LGQNRGYAFITFCGKEAAQGLVKPCDSCEI 59
Query: 187 KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFA 246
+ K+ + F+G P+N +++ + +K+ G++ I L P + +N GF
Sbjct: 60 RPGKVLGVCFSVANNTFVGFTPKNKTKENFEE-FSKVTEGLVGIILDHQPDDKKKNWGFC 118
Query: 247 FIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDI 305
F+EY +H A +R + + K + N TV ADP + ++VK L+V+NL +
Sbjct: 119 FLEYEDHKSAAQARLWLMSGKV-VWGNVVTVERADPVEEPDPEGMAKVKVLFVRNLATTV 177
Query: 306 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
T++ L++ F+ G++ +V ++ + Y FVHF +R A+KA+ EI+G+ +
Sbjct: 178 TEEILEKSFSQFGELERV--------KKLTDYAFVHFEDRE-AVKAVDEMNGKEIEGEEI 228
Query: 366 DCSLAK-PQADQK 377
+ LA P +K
Sbjct: 229 EIVLAMLPDRKRK 241
Score = 39 (18.8 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 373 QADQKTSGGSNSQKSALNPTYPP 395
Q D K +N Q LNP P
Sbjct: 388 QPDSKRRQTNNQQNWVLNPRQQP 410
>UNIPROTKB|Q5T0W7 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 EMBL:AL512366 EMBL:AL589794
IPI:IPI00657770 UniGene:Hs.282795 HGNC:HGNC:24086 GO:GO:0005720
GO:GO:0004131 GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC
HOVERGEN:HBG051370 SMR:Q5T0W7 Ensembl:ENST00000414883
Uniprot:Q5T0W7
Length = 201
Score = 265 (98.3 bits), Expect = 6.4e-23, P = 6.4e-23
Identities = 53/152 (34%), Positives = 92/152 (60%)
Query: 114 ALPPH-GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE 172
A PP G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K
Sbjct: 49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKV 107
Query: 173 LASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
A AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ +
Sbjct: 108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 263
+ + +NRGFAF+EY +H A +R+K+
Sbjct: 168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKL 199
>UNIPROTKB|D6RBS9 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965845
ProteinModelPortal:D6RBS9 SMR:D6RBS9 Ensembl:ENST00000515053
ArrayExpress:D6RBS9 Bgee:D6RBS9 Uniprot:D6RBS9
Length = 217
Score = 247 (92.0 bits), Expect = 8.9e-21, P = 8.9e-21
Identities = 50/149 (33%), Positives = 89/149 (59%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKM 263
+ +NRGFAF+EY +H A +R+K+
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKL 214
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 248 (92.4 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 73/270 (27%), Positives = 137/270 (50%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + +D L +G V VR+ + + + GY +V F + A++AI+
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 180 ELNSCELKGKKIKCSAAQ---AKHRLFIGNV-PRNWGEDDMRKAV----TKIGPGVISIE 231
ELN L GK I+ + + R GN+ +N E KA+ + G ++S +
Sbjct: 96 ELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFG-NIVSCK 154
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D ++ Q++G+ F++Y N A+ + +K++ L+D V R S A+
Sbjct: 155 VAVD--SSGQSKGYGFVQYANEESAQKAIEKLNG--MLLNDKQVYVGPFLRRQERDSTAN 210
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSA 348
+ K +YVKNL + T D LK F +GKIT V+ K G+ +S+ +GFV+F A
Sbjct: 211 KTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV--MKDGEGKSKGFGFVNFENADDA 268
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
+A+++ ++ D + A+ +++++T
Sbjct: 269 ARAVESLNGHKFDDKEWYVGRAQKKSERET 298
Score = 137 (53.3 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 50/211 (23%), Positives = 100/211 (47%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+++ N+ + +DD++ A + G + S ++KD + +++GF F+ + N A + +
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGK-ITSAVVMKDGEG--KSKGFGFVNFENADDAARAVE 273
Query: 262 KMSNPKFKLDDNAPTVSWADPRNAESS------------AASQVKA--LYVKNLPKDITQ 307
++ KF DD V A ++ + AA + ++ LYVKNL I+
Sbjct: 274 SLNGHKF--DDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISD 331
Query: 308 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367
++LKE+F+ G +T + G + GFV FA A +A+ I+ + L
Sbjct: 332 EKLKEIFSPFGTVTSSKVMRDPNGTSKGS-GFVAFATPEEATEAMSQLSGKMIESKPLYV 390
Query: 368 SLAKPQADQKT---SGGSNSQKSALNPTYPP 395
++A+ + D++ + S + A+ P+ P
Sbjct: 391 AIAQRKEDRRVRLQAQFSQVRPVAMQPSVGP 421
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 231 (86.4 bits), Expect = 3.3e-17, P = 3.3e-17
Identities = 66/268 (24%), Positives = 134/268 (50%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++D L ++G V +RI + + + + GYA+V F A +A++
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + + G ++S +
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 128
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK-LDDNAPTVSWADPRNAE-SSA 289
++ D Q + +G+AF+ + N + A+ + ++M+ K R AE S
Sbjct: 129 VMSDDQGS---KGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
Query: 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
AS+ +Y+KN D+ +RLK++F+ +GK V + G+ + +GFV F +A
Sbjct: 186 ASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAAK 244
Query: 350 KALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA++ +I+GQ++ A+ + +++
Sbjct: 245 KAVEEMNGRDINGQLIFVGRAQKKVERQ 272
Score = 134 (52.2 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 30/96 (31%), Positives = 51/96 (53%)
Query: 104 DEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGY 163
+ K + AEL + + VY+ D D+ L+ G+ V++M SG++KG+
Sbjct: 174 NRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGF 232
Query: 164 AFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
FV+F + E A +A+EE+N ++ G+ I AQ K
Sbjct: 233 GFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKK 268
Score = 114 (45.2 bits), Expect = 0.00095, P = 0.00095
Identities = 45/201 (22%), Positives = 95/201 (47%)
Query: 187 KGKKIKCSAAQAKHRLFIGNVPRNWG---EDDMRKAV-TKIGPGVISIELVKDPQNANQN 242
K +K + + ++K F +N+G +D+ K V +K G +S++++ D ++ ++
Sbjct: 173 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGK-TLSVKVMTD--SSGKS 229
Query: 243 RGFAFIEYYNHACAEYSRQKMS----NPKF--------KLDDNAPTVSWADPRNAESSAA 290
+GF F+ + +H A+ + ++M+ N + K++ A + E
Sbjct: 230 KGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRG 289
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
Q LY+KNL I ++L+ F+ G I++V + + GQ + +G + F+ A K
Sbjct: 290 CQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKG-FGLICFSSPEDATK 347
Query: 351 ALKNTEKYEIDGQVLDCSLAK 371
A+ + + L +LA+
Sbjct: 348 AMTEMNGRILGSKPLSIALAQ 368
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 231 (86.4 bits), Expect = 6.8e-17, P = 6.8e-17
Identities = 66/268 (24%), Positives = 134/268 (50%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++D L ++G V +RI + + + + GYA+V F A +A++
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + + G ++S +
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 186
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK-LDDNAPTVSWADPRNAE-SSA 289
++ D Q + +G+AF+ + N + A+ + ++M+ K R AE S
Sbjct: 187 VMSDDQGS---KGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
AS+ +Y+KN D+ +RLK++F+ +GK V + G+ + +GFV F +A
Sbjct: 244 ASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAAK 302
Query: 350 KALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA++ +I+GQ++ A+ + +++
Sbjct: 303 KAVEEMNGRDINGQLIFVGRAQKKVERQ 330
Score = 140 (54.3 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 47/179 (26%), Positives = 91/179 (50%)
Query: 187 KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFA 246
K K++ +A L++G++ + ED + + + +GP V+SI + +D Q ++ G+A
Sbjct: 55 KDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGP-VLSIRICRD-QVTRRSLGYA 112
Query: 247 FIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDIT 306
++ + A A+ + M+ K + + W+ R+A S + +++KNL K I
Sbjct: 113 YVNFLQLADAQKALDTMNFDIIK--GKSIRLMWSQ-RDAYLRR-SGIGNVFIKNLDKSID 168
Query: 307 QDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
L E F+ GKI + G + Y FVHF +S+A +A++ E++G++L
Sbjct: 169 NKTLYEHFSAFGKILSSKVMSDDQGSKG--YAFVHFQNQSAADRAIE-----EMNGKLL 220
Score = 134 (52.2 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 30/96 (31%), Positives = 51/96 (53%)
Query: 104 DEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGY 163
+ K + AEL + + VY+ D D+ L+ G+ V++M SG++KG+
Sbjct: 232 NRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGF 290
Query: 164 AFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
FV+F + E A +A+EE+N ++ G+ I AQ K
Sbjct: 291 GFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKK 326
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 225 (84.3 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 66/262 (25%), Positives = 129/262 (49%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P+ + D+L+ + + E+R++ KD G++KG A++ F+T+ A + +EE E+
Sbjct: 54 LPYKVTQDELKEVFE---DAVEIRLVS-KD-GKSKGIAYIEFKTEADAEKTLEEKQGTEI 108
Query: 187 KGKKIKC--SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL---------VKD 235
G+ I + + +++ F G W + ++ + L +K
Sbjct: 109 DGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATFIKV 168
Query: 236 PQNAN-QNRGFAFIEYYNHACAEYSRQKMSN-PKFKLDDNAPTVSWADPRNAESSAASQV 293
PQN N +++G+AFIE+ A E +++ +++ K +++ A + PR + ++ +
Sbjct: 169 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 225
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+VK L ++ T++ LKE F G I ++ + G + +GFV F A A +
Sbjct: 226 KTLFVKGLSEETTEETLKESF--DGSIRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKE 282
Query: 354 NTEKYEIDGQVLDCSLAKPQAD 375
E EIDG + AKP+ +
Sbjct: 283 AMEDGEIDGNKVTLDWAKPKGE 304
Score = 135 (52.6 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 37/170 (21%), Positives = 88/170 (51%)
Query: 124 LGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS 183
L + + A+++ L+ + + T +++ + ++ G++KGYAF+ F + E A +A+ N
Sbjct: 144 LSNLAYSATEETLQEVFE---KATFIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNK 199
Query: 184 CELKGKKIKC----------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
E++G+ I+ + +Q LF+ + E+ ++++ G I +V
Sbjct: 200 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEETTEETLKESFD----GSIRARIV 255
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 283
D + + ++GF F+++ + A+ +++ M + + +D N T+ WA P+
Sbjct: 256 TDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDGE--IDGNKVTLDWAKPK 302
Score = 116 (45.9 bits), Expect = 0.00055, P = 0.00055
Identities = 39/151 (25%), Positives = 67/151 (44%)
Query: 243 RGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLP 302
R F ++++ + AE + + K+ N + P+ +S + L KNLP
Sbjct: 1 RKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSKKDRDARTLLAKNLP 55
Query: 303 KDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 362
+TQD LKE+F +I V +K G+ + ++ F + A K L+ + EIDG
Sbjct: 56 YKVTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKTEADAEKTLEEKQGTEIDG 110
Query: 363 QVLDCSLAKPQA-DQKTSGGSNSQKSALNPT 392
+ + + +Q GG NS S + T
Sbjct: 111 RSISLYYTGEKGQNQDFRGGKNSTWSGESKT 141
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 225 (84.3 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 66/262 (25%), Positives = 129/262 (49%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P+ + D+L+ + + E+R++ KD G++KG A++ F+T+ A + +EE E+
Sbjct: 413 LPYKVTQDELKEVFE---DAVEIRLVS-KD-GKSKGIAYIEFKTEADAEKTLEEKQGTEI 467
Query: 187 KGKKIKC--SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL---------VKD 235
G+ I + + +++ F G W + ++ + L +K
Sbjct: 468 DGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATFIKV 527
Query: 236 PQNAN-QNRGFAFIEYYNHACAEYSRQKMSN-PKFKLDDNAPTVSWADPRNAESSAASQV 293
PQN N +++G+AFIE+ A E +++ +++ K +++ A + PR + ++ +
Sbjct: 528 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 584
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+VK L ++ T++ LKE F G I ++ + G + +GFV F A A +
Sbjct: 585 KTLFVKGLSEETTEETLKESF--DGSIRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKE 641
Query: 354 NTEKYEIDGQVLDCSLAKPQAD 375
E EIDG + AKP+ +
Sbjct: 642 AMEDGEIDGNKVTLDWAKPKGE 663
Score = 143 (55.4 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 52/225 (23%), Positives = 96/225 (42%)
Query: 169 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
R KE+A Q E K +K++ + LF+GN+ + +++ ++ +
Sbjct: 293 RKKEMAKQKAAP----EAKKQKVEATEPTTSFNLFVGNLNFSKSASELKTGISDV---FA 345
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
+L +R F ++++ + AE + + K+ N + P+ +S
Sbjct: 346 KNDLAVVDVRIGVSRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSK 400
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
+ L KNLP +TQD LKE+F +I V +K G+ + ++ F + A
Sbjct: 401 KDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKTEADA 455
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQA-DQKTSGGSNSQKSALNPT 392
K L+ + EIDG+ + + +Q GG NS S + T
Sbjct: 456 EKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKT 500
Score = 135 (52.6 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 37/170 (21%), Positives = 88/170 (51%)
Query: 124 LGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS 183
L + + A+++ L+ + + T +++ + ++ G++KGYAF+ F + E A +A+ N
Sbjct: 503 LSNLAYSATEETLQEVFE---KATFIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNK 558
Query: 184 CELKGKKIKC----------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
E++G+ I+ + +Q LF+ + E+ ++++ G I +V
Sbjct: 559 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEETTEETLKESFD----GSIRARIV 614
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 283
D + + ++GF F+++ + A+ +++ M + + +D N T+ WA P+
Sbjct: 615 TDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDGE--IDGNKVTLDWAKPK 661
Score = 49 (22.3 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 84 DAQKHYDGDEEMKVAESDKDDEKKKHAELL-ALPPHGSEVYLGGIP----HDASDDD 135
D ++ D DE+ E D+++E E + +P G + +P A D+D
Sbjct: 185 DEEEEEDEDEDEDEDEDDEEEEDDSEEEAMETVPAKGKKAPAKAVPVKAKSTAEDED 241
Score = 46 (21.3 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 20/98 (20%), Positives = 43/98 (43%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFC 140
+G +A+K +E+ +E D++DE++ + G+ P ASDD+
Sbjct: 136 NGKNAKKEDSDEEDEDDSEEDEEDEEEDEDDFEPAVVKGAAA--AAAP--ASDDEEEEED 191
Query: 141 KSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
+ E + + +D E + V + K+ ++A+
Sbjct: 192 EDEDEDEDEDDEEEEDDSEEEAMETVPAKGKKAPAKAV 229
Score = 43 (20.2 bits), Expect = 9.8e-16, Sum P(2) = 9.8e-16
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 84 DAQKHYDGDEEMKVAESDKDDEKKKHAE 111
D + + DEE + E D+D+++++ E
Sbjct: 256 DEDEDEEEDEEEEEDEEDEDEDEEEEEE 283
Score = 39 (18.8 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 22 EREKPIESEERVDLDEDND 40
E E+ E EE + DED D
Sbjct: 259 EDEEEDEEEEEDEEDEDED 277
Score = 39 (18.8 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 13/84 (15%), Positives = 26/84 (30%)
Query: 28 ESEERVDLDEDNDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGIDAQK 87
+ EE D DED D + D ++
Sbjct: 185 DEEEEEDEDEDEDEDEDDEEEEDDSEEEAMETVPAKGKKAPAKAVPVKAKSTAEDEDEEE 244
Query: 88 HYDGDEEMKVAESDKDDEKKKHAE 111
+ +E+ + + D+D+E+ + E
Sbjct: 245 DEEDEEDEEDDDEDEDEEEDEEEE 268
Score = 37 (18.1 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 22 EREKPIESEERVDLDEDND 40
E E E E+ D DED +
Sbjct: 261 EEEDEEEEEDEEDEDEDEE 279
Score = 37 (18.1 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 22 EREKPIESEERVDLDEDND 40
E E+ E EE D DED +
Sbjct: 244 EDEEDEEDEEDDDEDEDEE 262
Score = 37 (18.1 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 22 EREKPIESEERVDLDEDND 40
E E + E+ D DED D
Sbjct: 242 EEEDEEDEEDEEDDDEDED 260
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 165 (63.1 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 43/145 (29%), Positives = 77/145 (53%)
Query: 233 VKDPQNAN-QNRGFAFIEYYNHACAEYSRQKMSN-PKFKLDDNAPTVSWADPRNAESSAA 290
+K PQN N +++G+AFIE+ A E +++ +++ K +++ A + PR + ++ +
Sbjct: 137 IKVPQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS 193
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
K L+VK L +D T++ LKE F G + ++ + G + +GFV F A
Sbjct: 194 QPSKTLFVKGLSEDTTEETLKESF--DGSVRARIVTDRETGSSKG-FGFVDFNSEEDAKA 250
Query: 351 ALKNTEKYEIDGQVLDCSLAKPQAD 375
A + E EIDG + AKP+ +
Sbjct: 251 AKEAMEDGEIDGNKVTLDWAKPKGE 275
Score = 135 (52.6 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 36/170 (21%), Positives = 89/170 (52%)
Query: 124 LGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS 183
L + + A+++ L+ + + T +++ + ++ G++KGYAF+ F + E A +A+ N
Sbjct: 115 LSNLSYSATEETLQEVFE---KATFIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNK 170
Query: 184 CELKGKKIKC----------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
E++G+ I+ + +Q LF+ + + E+ ++++ G + +V
Sbjct: 171 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD----GSVRARIV 226
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 283
D + + ++GF F+++ + A+ +++ M + + +D N T+ WA P+
Sbjct: 227 TDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDGE--IDGNKVTLDWAKPK 273
Score = 103 (41.3 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L + NL T++ L+E+F K T + +P + G+ + Y F+ FA A +AL
Sbjct: 111 KTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQNGKSKG-YAFIEFASFEDAKEALN 166
Query: 354 NTEKYEIDGQVLDCSLAKPQ 373
+ K EI+G+ + L P+
Sbjct: 167 SCNKREIEGRAIRLELQGPR 186
Score = 99 (39.9 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 25/94 (26%), Positives = 50/94 (53%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P+ + D+L+ + + E+R++ KD G++KG A++ F+T+ A + EE E+
Sbjct: 1 LPYKVTQDELKEVFE---DAAEIRLVS-KD-GKSKGIAYIEFKTEADAEKTFEEKQGTEI 55
Query: 187 KGKKIKC--SAAQAKHRLFIGNVPRNWGEDDMRK 218
G+ I + + +++ + G W DD RK
Sbjct: 56 DGRSISLYYTGEKGQNQDYRGGKNSTWS-DDSRK 88
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 223 (83.6 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 65/262 (24%), Positives = 128/262 (48%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P+ + D+L+ + + E+R++ KD G++KG A++ F+T+ A + EE E+
Sbjct: 402 LPYKVTQDELKEVFE---DAAEIRLVS-KD-GKSKGIAYIEFKTEADAEKTFEEKQGTEI 456
Query: 187 KGKKIKC--SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL---------VKD 235
G+ I + + +++ + G W + ++ + L +K
Sbjct: 457 DGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKV 516
Query: 236 PQNAN-QNRGFAFIEYYNHACAEYSRQKMSN-PKFKLDDNAPTVSWADPRNAESSAASQV 293
PQN N +++G+AFIE+ A E +++ +++ K +++ A + PR + ++ +
Sbjct: 517 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 573
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+VK L +D T++ LKE F G + ++ + G + +GFV F A A +
Sbjct: 574 KTLFVKGLSEDTTEETLKESF--DGSVRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKE 630
Query: 354 NTEKYEIDGQVLDCSLAKPQAD 375
E EIDG + AKP+ +
Sbjct: 631 AMEDGEIDGNKVTLDWAKPKGE 652
Score = 144 (55.7 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 52/225 (23%), Positives = 94/225 (41%)
Query: 169 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
R KE+A Q E K +K++ + LF+GN+ N +++ ++ +
Sbjct: 282 RKKEMAKQKAAP----EAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDV---FA 334
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
+L R F ++++ + AE + + K+ N + P+ +S
Sbjct: 335 KNDLAVVDVRIGMTRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSK 389
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
+ L KNLP +TQD LKE+F +I V +K G+ + ++ F + A
Sbjct: 390 KERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKG-IAYIEFKTEADA 444
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQA-DQKTSGGSNSQKSALNPT 392
K + + EIDG+ + + +Q GG NS S + T
Sbjct: 445 EKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKT 489
Score = 135 (52.6 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 36/170 (21%), Positives = 89/170 (52%)
Query: 124 LGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS 183
L + + A+++ L+ + + T +++ + ++ G++KGYAF+ F + E A +A+ N
Sbjct: 492 LSNLSYSATEETLQEVFE---KATFIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNK 547
Query: 184 CELKGKKIKC----------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
E++G+ I+ + +Q LF+ + + E+ ++++ G + +V
Sbjct: 548 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD----GSVRARIV 603
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 283
D + + ++GF F+++ + A+ +++ M + + +D N T+ WA P+
Sbjct: 604 TDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDGE--IDGNKVTLDWAKPK 650
Score = 50 (22.7 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDD 135
+G +A+K +EE +E D+DD++ + + + P + P +DD
Sbjct: 136 NGKNAKKEDSDEEEEDDSEEDEDDDEDEDEDEDEIEPAAMKA-AAAAPASEDEDD 189
Score = 42 (19.8 bits), Expect = 8.6e-16, Sum P(3) = 8.6e-16
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 21 TEREKPIESEERVDLDEDND 40
++ E+ +SEE D DED D
Sbjct: 145 SDEEEEDDSEEDEDDDEDED 164
Score = 40 (19.1 bits), Expect = 8.6e-16, Sum P(3) = 8.6e-16
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 90 DGDEEMKVAESDKDDEKKKHAE 111
D D++ + D+DDE+++ E
Sbjct: 249 DDDDDDDEDDEDEDDEEEEEEE 270
Score = 39 (18.8 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 28 ESEERVDLDEDND 40
E EE D DED+D
Sbjct: 236 EDEEEDDEDEDDD 248
Score = 39 (18.8 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 22 EREKPIESEERVDLDEDND 40
E E E +E D DED D
Sbjct: 148 EEEDDSEEDEDDDEDEDED 166
Score = 38 (18.4 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 90 DGDEEMKVAESDKDDEKKKHAE 111
D D+E E D+++E+++ E
Sbjct: 252 DDDDEDDEDEDDEEEEEEEEEE 273
Score = 38 (18.4 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 90 DGDEEMKVAESDKDDEKKKHAE 111
D D+E + D+DD+++ +E
Sbjct: 186 DEDDEDDEDDEDEDDDEEDDSE 207
Score = 37 (18.1 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKHA 110
D D D DE+ + E ++++E K A
Sbjct: 249 DDDDDDDEDDEDEDDEEEEEEEEEEPVKEA 278
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 227 (85.0 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 68/257 (26%), Positives = 131/257 (50%)
Query: 118 HGS--EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
HG+ +Y+G + + +D L + + +V VR+ + + + GY +V + + A
Sbjct: 42 HGALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAE 101
Query: 176 QAIEELNSCELKGKKIKC--SAAQAKHR------LFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+++LN L GK I+ S+ + R LF+ N+ ++ + +A + G +
Sbjct: 102 KAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGT-I 160
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ D + Q+RG+ F+++ A+ + +K+ N K L+D V +
Sbjct: 161 VSCKVATD--HMGQSRGYGFVQFDTEDSAKNAIEKL-NGKV-LNDKQIFVGPFLRKEERE 216
Query: 288 SAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAE 344
SAA ++K +YVKNL + T D LK F +G I+ V+ + G +SR +GFV+F
Sbjct: 217 SAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVV--MRDGDGKSRCFGFVNFEN 274
Query: 345 RSSAMKALK--NTEKYE 359
A +A++ N +K++
Sbjct: 275 PEDAARAVEALNGKKFD 291
Score = 138 (53.6 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 67/297 (22%), Positives = 121/297 (40%)
Query: 186 LKGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRG 244
L+ ++ + +A + K +++ N+ +D+++ + G + S +++D ++R
Sbjct: 210 LRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYG-SISSAVVMRDGDG--KSRC 266
Query: 245 FAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN------------AESSAASQ 292
F F+ + N A + + ++ KF DD V A ++ S ++
Sbjct: 267 FGFVNFENPEDAARAVEALNGKKF--DDKEWYVGKAQKKSERELELSRRYEQGSSDGGNK 324
Query: 293 VKAL--YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
L YVKNL +T ++L+ELFA G IT + G + GFV F+ S A +
Sbjct: 325 FDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGS-GFVAFSAASEASR 383
Query: 351 ALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHXXXXXXXXXXXXXX 410
L + G+ L +LA+ + +++ +Q S + P + P
Sbjct: 384 VLNEMNGKMVGGKPLYVALAQRKEERRAK--LQAQFSQMRPAFIP-------GVGPRMPI 434
Query: 411 XXXXXXXFAQPMVYGRGAAP-----GGMAMLPMLLPDGR---IGYVLQQPGVQQHNP 459
Q + YG+G P G P L+P R G + QPG Q P
Sbjct: 435 FTGGAPGLGQQIFYGQGPPPIIPHQPGFGYQPQLVPGMRPAFFGGPMMQPGQQGPRP 491
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 223 (83.6 bits), Expect = 6.7e-16, Sum P(3) = 6.7e-16
Identities = 65/262 (24%), Positives = 128/262 (48%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P+ + D+L+ + + E+R++ KD G++KG A++ F+T+ A + EE E+
Sbjct: 400 LPYKVTQDELKEVFE---DAAEIRLVS-KD-GKSKGIAYIEFKTEADAEKTFEEKQGTEI 454
Query: 187 KGKKIKC--SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL---------VKD 235
G+ I + + +++ + G W + ++ + L +K
Sbjct: 455 DGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKV 514
Query: 236 PQNAN-QNRGFAFIEYYNHACAEYSRQKMSN-PKFKLDDNAPTVSWADPRNAESSAASQV 293
PQN N +++G+AFIE+ A E +++ +++ K +++ A + PR + ++ +
Sbjct: 515 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 571
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+VK L +D T++ LKE F G + ++ + G + +GFV F A A +
Sbjct: 572 KTLFVKGLSEDTTEETLKESF--DGSVRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKE 628
Query: 354 NTEKYEIDGQVLDCSLAKPQAD 375
E EIDG + AKP+ +
Sbjct: 629 AMEDGEIDGNKVTLDWAKPKGE 650
Score = 144 (55.7 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 52/225 (23%), Positives = 94/225 (41%)
Query: 169 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
R KE+A Q E K +K++ + LF+GN+ N +++ ++ +
Sbjct: 280 RKKEMAKQKAAP----EAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDV---FA 332
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
+L R F ++++ + AE + + K+ N + P+ +S
Sbjct: 333 KNDLAVVDVRIGMTRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSK 387
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
+ L KNLP +TQD LKE+F +I V +K G+ + ++ F + A
Sbjct: 388 KERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKG-IAYIEFKTEADA 442
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQA-DQKTSGGSNSQKSALNPT 392
K + + EIDG+ + + +Q GG NS S + T
Sbjct: 443 EKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKT 487
Score = 135 (52.6 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 36/170 (21%), Positives = 89/170 (52%)
Query: 124 LGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS 183
L + + A+++ L+ + + T +++ + ++ G++KGYAF+ F + E A +A+ N
Sbjct: 490 LSNLSYSATEETLQEVFE---KATFIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNK 545
Query: 184 CELKGKKIKC----------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
E++G+ I+ + +Q LF+ + + E+ ++++ G + +V
Sbjct: 546 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD----GSVRARIV 601
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 283
D + + ++GF F+++ + A+ +++ M + + +D N T+ WA P+
Sbjct: 602 TDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDGE--IDGNKVTLDWAKPK 648
Score = 45 (20.9 bits), Expect = 6.7e-16, Sum P(3) = 6.7e-16
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 84 DAQKHYDGDEEMKVAESDKDDEKKKHAE 111
D + D D+E + D+DDE+++ E
Sbjct: 241 DDEDEDDDDDEDDEDDDDEDDEEEEEEE 268
Score = 45 (20.9 bits), Expect = 9.7e-16, Sum P(2) = 9.7e-16
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDD 135
+G +A+K +EE +E D++D++ + + + P + P +DD
Sbjct: 136 NGKNAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKA-AAAAPASEDEDD 189
Score = 45 (20.9 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 25/89 (28%), Positives = 32/89 (35%)
Query: 92 DEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
DEE E + +DE + A A SE D DDD S E E
Sbjct: 156 DEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTP 215
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEE 180
KGK + + V + K +A EE
Sbjct: 216 AKGKKAAKV-----VPVKAKNVAEDEDEE 239
Score = 39 (18.8 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 28 ESEERVDLDEDND 40
E EE D DED+D
Sbjct: 236 EDEEEDDEDEDDD 248
Score = 39 (18.8 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKHA 110
D D D DE+ + E ++++E K A
Sbjct: 247 DDDDEDDEDDDDEDDEEEEEEEEEEPVKEA 276
Score = 38 (18.4 bits), Expect = 6.7e-16, Sum P(3) = 6.7e-16
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 22 EREKPIESEERVDLDEDND 40
E + E +E D DED D
Sbjct: 148 EEDDDSEEDEEDDEDEDED 166
Score = 38 (18.4 bits), Expect = 6.7e-16, Sum P(3) = 6.7e-16
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 21 TEREKPIESEERVDLDEDND 40
++ E+ +SEE + DED D
Sbjct: 145 SDEEEDDDSEEDEEDDEDED 164
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 225 (84.3 bits), Expect = 9.3e-16, P = 9.3e-16
Identities = 67/297 (22%), Positives = 141/297 (47%)
Query: 92 DEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
++ A + D ++ E + + + +Y+G + ++ L IG+V+ +R+
Sbjct: 24 EQSAAAATTTADQSAEEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRV 83
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ----AKH----RLF 203
+ S ++ GYA+V + E +AIEELN ++G+ + +Q A+ +F
Sbjct: 84 CRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIF 143
Query: 204 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 263
I N+ + + G ++S ++ D Q++ F F+ Y AE + + +
Sbjct: 144 IKNLHPAIDNKALHDTFSAFGK-ILSCKVATD--EFGQSKCFGFVHYETAEAAEAAIENV 200
Query: 264 SNPKFKLDDNAPTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGK 319
+ L+D V + S ++KA +YVKN+ + +++ ++LF+ GK
Sbjct: 201 NG--MLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGK 258
Query: 320 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
IT + + + G+ + +GFV+F + SA+KA++ EI+GQ + A+ + ++
Sbjct: 259 ITSIYLEKDQDGKSKG-FGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRER 314
Score = 130 (50.8 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 49/198 (24%), Positives = 87/198 (43%)
Query: 187 KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 245
K ++ K +A +++ N+ N+ E+ K + G + SI L KD +++GF
Sbjct: 219 KDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGK-ITSIYLEKDQDG--KSKGF 275
Query: 246 AFIEYYNHACA-----EYSRQKMSNPKF-------KLDDNAPTVSWADPRNAESSAASQV 293
F+ + +H A E + ++++ K K + + E A Q
Sbjct: 276 GFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQG 335
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
L+VKNL I ++L+E F G IT + + G+ + +GFV F A KA+
Sbjct: 336 VNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKG-FGFVCFTTPEEATKAIT 394
Query: 354 NTEKYEIDGQVLDCSLAK 371
I+G+ L +LA+
Sbjct: 395 EMNTRMINGKPLYVALAQ 412
Score = 126 (49.4 bits), Expect = 0.00010, P = 0.00010
Identities = 35/121 (28%), Positives = 61/121 (50%)
Query: 83 IDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPP----HGSEVYLGGIPHDASDDDLRH 138
I+ QK Y G + K ++ +E KK E + L G +++ + + L
Sbjct: 298 INGQKIYVGRAQKK---RERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEE 354
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
K G +T ++M ++G++KG+ FV F T E A++AI E+N+ + GK + + AQ
Sbjct: 355 EFKPFGTITSAKVMVD-EAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQR 413
Query: 199 K 199
K
Sbjct: 414 K 414
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 223 (83.6 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 65/262 (24%), Positives = 128/262 (48%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P+ + D+L+ + + E+R++ KD G++KG A++ F+T+ A + EE E+
Sbjct: 401 LPYKVTQDELKEVFE---DAAEIRLVS-KD-GKSKGIAYIEFKTEADAEKTFEEKQGTEI 455
Query: 187 KGKKIKC--SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL---------VKD 235
G+ I + + +++ + G W + ++ + L +K
Sbjct: 456 DGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKV 515
Query: 236 PQNAN-QNRGFAFIEYYNHACAEYSRQKMSN-PKFKLDDNAPTVSWADPRNAESSAASQV 293
PQN N +++G+AFIE+ A E +++ +++ K +++ A + PR + ++ +
Sbjct: 516 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 572
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+VK L +D T++ LKE F G + ++ + G + +GFV F A A +
Sbjct: 573 KTLFVKGLSEDTTEETLKESF--DGSVRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKE 629
Query: 354 NTEKYEIDGQVLDCSLAKPQAD 375
E EIDG + AKP+ +
Sbjct: 630 AMEDGEIDGNKVTLDWAKPKGE 651
Score = 144 (55.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 52/225 (23%), Positives = 94/225 (41%)
Query: 169 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
R KE+A Q E K +K++ + LF+GN+ N +++ ++ +
Sbjct: 281 RKKEMAKQKAAP----EAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDV---FA 333
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
+L R F ++++ + AE + + K+ N + P+ +S
Sbjct: 334 KNDLAVVDVRIGMTRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSK 388
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
+ L KNLP +TQD LKE+F +I V +K G+ + ++ F + A
Sbjct: 389 KERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKG-IAYIEFKTEADA 443
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQA-DQKTSGGSNSQKSALNPT 392
K + + EIDG+ + + +Q GG NS S + T
Sbjct: 444 EKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKT 488
Score = 135 (52.6 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 36/170 (21%), Positives = 89/170 (52%)
Query: 124 LGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS 183
L + + A+++ L+ + + T +++ + ++ G++KGYAF+ F + E A +A+ N
Sbjct: 491 LSNLSYSATEETLQEVFE---KATFIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNK 546
Query: 184 CELKGKKIKC----------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
E++G+ I+ + +Q LF+ + + E+ ++++ G + +V
Sbjct: 547 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD----GSVRARIV 602
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 283
D + + ++GF F+++ + A+ +++ M + + +D N T+ WA P+
Sbjct: 603 TDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDGE--IDGNKVTLDWAKPK 649
Score = 44 (20.5 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 81 DGIDAQKHYDGDEEMK--VAESDKDDEKKKHAE 111
+G +A+K D DEE + E D+DDE + E
Sbjct: 136 NGKNAKKE-DSDEEEEDDSEEDDEDDEDEDEDE 167
Score = 41 (19.5 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 84 DAQKHYDGDEEMKVAESDKDDEKKKHAE 111
D + D DE+ + + D +DE+++ E
Sbjct: 243 DEDEDDDDDEDDEDEDDDDEDEEEEEEE 270
Score = 39 (18.8 bits), Expect = 2.8e-15, Sum P(3) = 2.8e-15
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 84 DAQKHYDGDEEMKVAESDKDDEKKKHAE 111
D + D D+E E D D+++++ E
Sbjct: 242 DDEDEDDDDDEDDEDEDDDDEDEEEEEE 269
Score = 39 (18.8 bits), Expect = 2.8e-15, Sum P(3) = 2.8e-15
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 90 DGDEEMKVAESDKDDEKKKHAELLALPP 117
D D+E E D D+E E + P
Sbjct: 189 DEDDEDDEDEDDDDEEDDSEEEAMETTP 216
Score = 39 (18.8 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 28 ESEERVDLDEDND 40
E EE D DED+D
Sbjct: 237 EDEEEDDEDEDDD 249
Score = 38 (18.4 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 22 EREKPIESEERVDLDEDND 40
E E E ++ D DED D
Sbjct: 148 EEEDDSEEDDEDDEDEDED 166
Score = 37 (18.1 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 21 TEREKPIESEERVDLDEDND 40
++ E+ +SEE + DED D
Sbjct: 145 SDEEEEDDSEEDDEDDEDED 164
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 214 (80.4 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 68/266 (25%), Positives = 126/266 (47%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNVPRNWGEDDM-RKAVTKIGPGVISIELVKD 235
+N LKG+ I+ +Q L +GN+ ED + KA+ +I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 236 PQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESSA-AS 291
+ + +RGF F+ + H A+ + M+ L+D V R AE A A
Sbjct: 131 ACDEHGSRGFGFVHFETHEAAQQAINTMNG--MLLNDRKVFVGHFKSRREREAELGARAL 188
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+ +YVKNLP D+ + L++LF+ GK+ V + G R +GFV+F + A KA
Sbjct: 189 EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEEAQKA 247
Query: 352 LKNTEKYEIDGQVLDCSLAKPQADQK 377
+ + E+ G++L A+ + +++
Sbjct: 248 VVHMNGKEVSGRLLYAGRAQKRVERQ 273
Score = 114 (45.2 bits), Expect = 0.00077, P = 0.00077
Identities = 26/106 (24%), Positives = 52/106 (49%)
Query: 94 EMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMK 153
+ KV +++ AEL A + +Y+ +P D + L+ G++ V++M+
Sbjct: 165 DRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR 224
Query: 154 GKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
+SG ++ + FV F E A +A+ +N E+ G+ + AQ +
Sbjct: 225 D-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKR 269
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 222 (83.2 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 72/271 (26%), Positives = 126/271 (46%)
Query: 118 HG---SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
HG S +Y+G + D ++ L IG + +R+ + + + GYA++ F+ A
Sbjct: 6 HGCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADA 65
Query: 175 SQAIEELNSCELKGKKIKCSAAQAK---HRLFIGNV-PRNWGEDDMRKAVTKIGPGVISI 230
+A++ +N +KG+ I+ + R +GN+ +N KA+ SI
Sbjct: 66 ERALDTMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSI 125
Query: 231 ELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAES 287
K N + +RGF F+ + H A+ + M+ L+D V R AE
Sbjct: 126 LSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNG--MLLNDRKVFVGHFKSRQKREAEL 183
Query: 288 SA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346
A A +YVKNL D+ + L++LF+ GK V + GQ R +GF++F +
Sbjct: 184 GARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRG-FGFINFEKHE 242
Query: 347 SAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+ + E+ GQ+L A+ +A+++
Sbjct: 243 EAQKAVDHMNGKEVSGQLLYVGRAQKRAERQ 273
Score = 120 (47.3 bits), Expect = 0.00044, P = 0.00044
Identities = 46/188 (24%), Positives = 84/188 (44%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+++ N+ + E ++ ++ G S+++++D Q+RGF FI + H A+ +
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGK-TQSVKVMRDSNG--QSRGFGFINFEKHEEAQKAVD 249
Query: 262 KMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDR 309
M+ + +L A+ +N Q+K LYVKNL I DR
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDR 309
Query: 310 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369
LKE+F+ +G IT + +GFV F+ A KA+ + + L +L
Sbjct: 310 LKEVFSTYGVITSAKV--MTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 370 AKPQADQK 377
A+ + ++K
Sbjct: 368 AQRKEERK 375
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 224 (83.9 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 80/311 (25%), Positives = 148/311 (47%)
Query: 93 EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIM 152
E+ K ES K+++K++ A L ++ +P+ ++D++++ ++ EVR++
Sbjct: 351 EKAKSKESLKENKKERDARTL---------FVKNLPYRVTEDEMKNVFEN---ALEVRLV 398
Query: 153 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------------KCSAAQA 198
K+ G +KG A++ F+T+ A +A+EE E+ G+ + K +
Sbjct: 399 LNKE-GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERE 457
Query: 199 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNR--GFAFIEYYNHACA 256
L + N+ E+ +++ K SI++ PQN NQ R G+AF+E+ A
Sbjct: 458 SKTLIVNNLSYAASEETLQELFKK----ATSIKM---PQN-NQGRPKGYAFVEFPTAEDA 509
Query: 257 EYSRQKMSNPKF-----KLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRL 310
+ + +N + +L+ ++P SW NA Q K L+V+ L +D T++ L
Sbjct: 510 KEALNSCNNTEIEGRAIRLEFSSP--SWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETL 567
Query: 311 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370
+E F G I+ ++ G + +GFV F+ A A + E EIDG + A
Sbjct: 568 RESF--EGSISARIVTDRDTGSSKG-FGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFA 624
Query: 371 KPQADQKTSGG 381
KP+ + + GG
Sbjct: 625 KPKGEFQRGGG 635
Score = 210 (79.0 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 80/327 (24%), Positives = 145/327 (44%)
Query: 87 KHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLR-----HFCK 141
K G + ++A + KKK E+ A P +++ + ++LR F K
Sbjct: 247 KEAPGKRKKEMANKSAPEAKKKKTEIKA-PASAFSLFVKNLTPTKDYEELRTAIKEFFGK 305
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR 201
+V+EVRI G +K + +V F + E +A++ LN +L G +IK A++K
Sbjct: 306 KNLQVSEVRI------GSSKRFGYVDFLSAEDMDKALQ-LNGKKLMGLEIKLEKAKSKES 358
Query: 202 L------------FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIE 249
L F+ N+P ED+M+ + + + LV + + ++ +G A+IE
Sbjct: 359 LKENKKERDARTLFVKNLPYRVTEDEMKN----VFENALEVRLVLNKEGSS--KGMAYIE 412
Query: 250 YYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS----QVKALYVKNLPKDI 305
+ A AE + ++ + +D A + + ++ + S + K L V NL
Sbjct: 413 FKTEAEAEKALEEKQGTE--VDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAA 470
Query: 306 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
+++ L+ELF K T + +P G+ + Y FV F A +AL + EI+G+ +
Sbjct: 471 SEETLQELFK---KATSIKMPQNNQGRPKG-YAFVEFPTAEDAKEALNSCNNTEIEGRAI 526
Query: 366 DCSLAKP---QADQKTSGGSNSQKSAL 389
+ P + + GG N Q L
Sbjct: 527 RLEFSSPSWQKGNMNARGGFNQQSKTL 553
Score = 40 (19.1 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 84 DAQKHYDGDEEMKVAESDKDDEKKKHAE 111
D + D DE+ E D+DDE++ E
Sbjct: 216 DEEDEEDEDED----EEDEDDEEEDEEE 239
Score = 38 (18.4 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 81 DGIDAQKHY--DGDEEMKVAESDKDDEKKKHAE 111
+G +A+K + DE+ + E D+D+E++ E
Sbjct: 103 NGKNAKKEESEEEDEDDEDDEEDEDEEEESDEE 135
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 224 (83.9 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 80/311 (25%), Positives = 148/311 (47%)
Query: 93 EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIM 152
E+ K ES K+++K++ A L ++ +P+ ++D++++ ++ EVR++
Sbjct: 353 EKAKSKESLKENKKERDARTL---------FVKNLPYRVTEDEMKNVFEN---ALEVRLV 400
Query: 153 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------------KCSAAQA 198
K+ G +KG A++ F+T+ A +A+EE E+ G+ + K +
Sbjct: 401 LNKE-GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERE 459
Query: 199 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNR--GFAFIEYYNHACA 256
L + N+ E+ +++ K SI++ PQN NQ R G+AF+E+ A
Sbjct: 460 SKTLIVNNLSYAASEETLQELFKK----ATSIKM---PQN-NQGRPKGYAFVEFPTAEDA 511
Query: 257 EYSRQKMSNPKF-----KLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRL 310
+ + +N + +L+ ++P SW NA Q K L+V+ L +D T++ L
Sbjct: 512 KEALNSCNNTEIEGRAIRLEFSSP--SWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETL 569
Query: 311 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370
+E F G I+ ++ G + +GFV F+ A A + E EIDG + A
Sbjct: 570 RESF--EGSISARIVTDRDTGSSKG-FGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFA 626
Query: 371 KPQADQKTSGG 381
KP+ + + GG
Sbjct: 627 KPKGEFQRGGG 637
Score = 135 (52.6 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 50/224 (22%), Positives = 103/224 (45%)
Query: 171 KELASQAIEEL-NSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
KE + +E+ N + KK K + LF+ N+ +++R A+ + G +
Sbjct: 251 KEAPGKRKKEMANKSAPEAKKKKTETPASAFSLFVKNLTPTKDYEELRTAIKEFF-GKKN 309
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA--ES 287
++ V + + + R F ++++ + + + N K KL + A + + E+
Sbjct: 310 LQ-VSEVRIGSSKR-FGYVDFLS--AEDMDKALQLNGK-KLMGLEIKLEKAKSKESLKEN 364
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+ L+VKNLP +T+D +K +F + ++ V+ K G + ++ F +
Sbjct: 365 KKERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVL---NKEGSSKGM-AYIEFKTEAE 420
Query: 348 AMKALKNTEKYEIDGQ--VLDCSLAKPQADQKTSGGSNSQKSAL 389
A KAL+ + E+DG+ V+D + K Q + + GG K+ +
Sbjct: 421 AEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLI 464
Score = 40 (19.1 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 84 DAQKHYDGDEEMKVAESDKDDEKKKHAE 111
D + D DE+ E D+DDE++ E
Sbjct: 220 DEEDEEDEDED----EEDEDDEEEDEEE 243
Score = 38 (18.4 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 81 DGIDAQKHY--DGDEEMKVAESDKDDEKKKHAE 111
+G +A+K + DE+ + E D+D+E++ E
Sbjct: 107 NGKNAKKEESEEEDEDDEDDEEDEDEEEESDEE 139
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 224 (83.9 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 80/311 (25%), Positives = 148/311 (47%)
Query: 93 EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIM 152
E+ K ES K+++K++ A L ++ +P+ ++D++++ ++ EVR++
Sbjct: 353 EKAKSKESLKENKKERDARTL---------FVKNLPYRVTEDEMKNVFEN---ALEVRLV 400
Query: 153 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------------KCSAAQA 198
K+ G +KG A++ F+T+ A +A+EE E+ G+ + K +
Sbjct: 401 LNKE-GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERE 459
Query: 199 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNR--GFAFIEYYNHACA 256
L + N+ E+ +++ K SI++ PQN NQ R G+AF+E+ A
Sbjct: 460 SKTLIVNNLSYAASEETLQELFKK----ATSIKM---PQN-NQGRPKGYAFVEFPTAEDA 511
Query: 257 EYSRQKMSNPKF-----KLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRL 310
+ + +N + +L+ ++P SW NA Q K L+V+ L +D T++ L
Sbjct: 512 KEALNSCNNTEIEGRAIRLEFSSP--SWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETL 569
Query: 311 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370
+E F G I+ ++ G + +GFV F+ A A + E EIDG + A
Sbjct: 570 RESF--EGSISARIVTDRDTGSSKG-FGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFA 626
Query: 371 KPQADQKTSGG 381
KP+ + + GG
Sbjct: 627 KPKGEFQRGGG 637
Score = 135 (52.6 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 50/224 (22%), Positives = 103/224 (45%)
Query: 171 KELASQAIEEL-NSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
KE + +E+ N + KK K + LF+ N+ +++R A+ + G +
Sbjct: 251 KEAPGKRKKEMANKSAPEAKKKKTETPASAFSLFVKNLTPTKDYEELRTAIKEFF-GKKN 309
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA--ES 287
++ V + + + R F ++++ + + + N K KL + A + + E+
Sbjct: 310 LQ-VSEVRIGSSKR-FGYVDFLS--AEDMDKALQLNGK-KLMGLEIKLEKAKSKESLKEN 364
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+ L+VKNLP +T+D +K +F + ++ V+ K G + ++ F +
Sbjct: 365 KKERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVL---NKEGSSKGM-AYIEFKTEAE 420
Query: 348 AMKALKNTEKYEIDGQ--VLDCSLAKPQADQKTSGGSNSQKSAL 389
A KAL+ + E+DG+ V+D + K Q + + GG K+ +
Sbjct: 421 AEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLI 464
Score = 40 (19.1 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 84 DAQKHYDGDEEMKVAESDKDDEKKKHAE 111
D + D DE+ E D+DDE++ E
Sbjct: 220 DEEDEEDEDED----EEDEDDEEEDEEE 243
Score = 38 (18.4 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 81 DGIDAQKHY--DGDEEMKVAESDKDDEKKKHAE 111
+G +A+K + DE+ + E D+D+E++ E
Sbjct: 107 NGKNAKKEESEEEDEDDEDDEEDEDEEEESDEE 139
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 221 (82.9 bits), Expect = 3.2e-15, Sum P(3) = 3.2e-15
Identities = 65/262 (24%), Positives = 127/262 (48%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P+ + D+L+ + + E+R++ KD G++KG A++ F+T+ A + EE E+
Sbjct: 405 LPYKVTQDELKEVFE---DAVEIRLVS-KD-GKSKGIAYIEFKTEADAEKTFEEKQGTEI 459
Query: 187 KGKKIKC--SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL---------VKD 235
G+ I + + + + + G W + ++ + L +K
Sbjct: 460 DGRSISLYYTGEKGQSQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKV 519
Query: 236 PQNAN-QNRGFAFIEYYNHACAEYSRQKMSN-PKFKLDDNAPTVSWADPRNAESSAASQV 293
PQN N +++G+AFIE+ A E +++ +++ K +++ A + PR + ++ +
Sbjct: 520 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 576
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+VK L +D T++ LKE F G + ++ + G + +GFV F A A +
Sbjct: 577 KTLFVKGLSEDTTEETLKESF--DGSVRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKE 633
Query: 354 NTEKYEIDGQVLDCSLAKPQAD 375
E EIDG + AKP+ +
Sbjct: 634 AMEDGEIDGNKVTLDWAKPKGE 655
Score = 136 (52.9 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 51/225 (22%), Positives = 94/225 (41%)
Query: 169 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
R KE+A Q E K +K++ + LF+GN+ + +++ ++ +
Sbjct: 285 RKKEMAKQKAAP----EAKKQKVEATEPTTSFNLFVGNLNFSKSAPELKTGISDL---FA 337
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
+L +R F ++++ + AE + + K+ N + P+ +S
Sbjct: 338 KNDLAVVDVRIGVSRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSK 392
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
+ L KNLP +TQD LKE+F +I V +K G+ + ++ F + A
Sbjct: 393 KDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKTEADA 447
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQAD-QKTSGGSNSQKSALNPT 392
K + + EIDG+ + + Q GG NS S + T
Sbjct: 448 EKTFEEKQGTEIDGRSISLYYTGEKGQSQDYRGGKNSTWSGESKT 492
Score = 135 (52.6 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
Identities = 36/170 (21%), Positives = 89/170 (52%)
Query: 124 LGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS 183
L + + A+++ L+ + + T +++ + ++ G++KGYAF+ F + E A +A+ N
Sbjct: 495 LSNLSYSATEETLQEVFE---KATFIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNK 550
Query: 184 CELKGKKIKC----------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
E++G+ I+ + +Q LF+ + + E+ ++++ G + +V
Sbjct: 551 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD----GSVRARIV 606
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 283
D + + ++GF F+++ + A+ +++ M + + +D N T+ WA P+
Sbjct: 607 TDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDGE--IDGNKVTLDWAKPK 653
Score = 41 (19.5 bits), Expect = 3.2e-15, Sum P(3) = 3.2e-15
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 84 DAQKHYDGDEEMKVAESDKDDEKKKHAE 111
D + D DEE E D+DD++++ E
Sbjct: 244 DDEDEEDDDEE----EEDEDDDEEEDEE 267
Score = 38 (18.4 bits), Expect = 3.2e-15, Sum P(3) = 3.2e-15
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 21 TEREKPIESEERVDLDEDND 40
++ E +SEE + DED D
Sbjct: 145 SDEEDDDDSEEEDEEDEDED 164
Score = 37 (18.1 bits), Expect = 4.0e-15, Sum P(3) = 4.0e-15
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 22 EREKPIESEERVDLDEDND 40
E + E E+ D DED D
Sbjct: 148 EDDDDSEEEDEEDEDEDED 166
Score = 37 (18.1 bits), Expect = 8.1e-15, Sum P(3) = 8.1e-15
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKK 107
D + ++ D DEE E ++++E++
Sbjct: 250 DDDEEEEDEDDDEEEDEEEEEEEEEEE 276
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 220 (82.5 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 66/262 (25%), Positives = 127/262 (48%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P+ + D+L+ + + E+R++ KD G++KG A++ F+T+ A + +EE E+
Sbjct: 410 LPYKVTQDELKEVFE---DAVEIRLVS-KD-GKSKGIAYIEFKTEADAEKTLEEKQGTEI 464
Query: 187 KGKKIKC--SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL---------VKD 235
G+ I + + + + G W + ++ + L +K
Sbjct: 465 DGRSISLYYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATHIKV 524
Query: 236 PQNAN-QNRGFAFIEYYNHACAEYSRQKMSN-PKFKLDDNAPTVSWADPRNAESSAASQV 293
PQN N +++G+AFIE+ A E +++ +++ K +++ A + PR + ++ +
Sbjct: 525 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 581
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+VK L +D T++ LKE F G I ++ + G + +GFV F A A +
Sbjct: 582 KTLFVKGLSEDTTEETLKESF--DGSIRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKE 638
Query: 354 NTEKYEIDGQVLDCSLAKPQAD 375
E EIDG + AKP+ +
Sbjct: 639 AMEDGEIDGNKVTLDWAKPKGE 660
Score = 142 (55.0 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 53/225 (23%), Positives = 95/225 (42%)
Query: 169 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
R KE+A Q E K +K++ + LF+GN+ N +++ ++ +
Sbjct: 290 RKKEMAKQKAAP----EAKKQKVEGTEPTTSFNLFVGNLNFNKSAPELKTGISDL---FA 342
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
+L +R F ++++ + AE + + K+ N + P+ +S
Sbjct: 343 KNDLAVVDVRIGVSRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSK 397
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
+ L KNLP +TQD LKE+F +I V +K G+ + ++ F + A
Sbjct: 398 KDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKTEADA 452
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQAD-QKTSGGSNSQKSALNPT 392
K L+ + EIDG+ + + Q GG NS S + T
Sbjct: 453 EKTLEEKQGTEIDGRSISLYYTGEKGQSQDHRGGKNSTWSGESKT 497
Score = 139 (54.0 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 37/170 (21%), Positives = 89/170 (52%)
Query: 124 LGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS 183
L + + A+++ L+ + + T +++ + ++ G++KGYAF+ F + E A +A+ N
Sbjct: 500 LSNLSYSATEETLQEVFE---KATHIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNK 555
Query: 184 CELKGKKIKC----------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
E++G+ I+ + +Q LF+ + + E+ ++++ G I +V
Sbjct: 556 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD----GSIRARIV 611
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 283
D + + ++GF F+++ + A+ +++ M + + +D N T+ WA P+
Sbjct: 612 TDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDGE--IDGNKVTLDWAKPK 658
Score = 42 (19.8 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 81 DGIDAQKHYDGDEEMK---VAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDD 135
+G +A+K D DEE + E D D+E+ + A A G+ + DDD
Sbjct: 136 NGKNAKKE-DSDEEDEDDSEEEDDDDEEEDEPAVRKAAAAFGAAPATDDEDDEDDDDD 192
Score = 42 (19.8 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 26/103 (25%), Positives = 42/103 (40%)
Query: 95 MKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG 154
+K+A++ K+ K +A PP EV + S+D+ +S GE + KG
Sbjct: 2 VKLAKAGKNQGDSKK---MAPPP--KEVEEDSEDEEMSEDEDD---ESSGEEVVIPQKKG 53
Query: 155 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197
K + V TK++A A + GKK A+
Sbjct: 54 KKAATTPAKKMVVSPTKKVAV-ATPAKKAVVTPGKKAAAMPAK 95
Score = 40 (19.1 bits), Expect = 6.9e-15, Sum P(3) = 6.9e-15
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 90 DGDEEMKVAESDKDDEKKKHAE 111
D +EE + + D+DD+ ++ E
Sbjct: 250 DDEEEEEEDDDDEDDDDEEEEE 271
Score = 38 (18.4 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 90 DGDEEMKVAESDKDDE 105
D D++ + E D DDE
Sbjct: 247 DDDDDEEEEEEDDDDE 262
Score = 38 (18.4 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 28 ESEERVDLDEDND 40
E EE D DED+D
Sbjct: 253 EEEEEDDDDEDDD 265
Score = 37 (18.1 bits), Expect = 6.9e-15, Sum P(3) = 6.9e-15
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 21 TEREKPIESEERVDLDEDND 40
++ E +SEE D DE+ D
Sbjct: 145 SDEEDEDDSEEEDDDDEEED 164
Score = 37 (18.1 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 90 DGDEEMKVAESDKDDEKKKHAE 111
D DEE + + D +D+ + E
Sbjct: 249 DDDEEEEEEDDDDEDDDDEEEE 270
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 217 (81.4 bits), Expect = 7.5e-15, P = 7.5e-15
Identities = 71/269 (26%), Positives = 133/269 (49%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KGK I+ +Q L +GNV +N + KA+ T G ++S ++
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N ++G+AF+ + A+ + +KM+ L+D V R AE A
Sbjct: 131 VCDE---NGSKGYAFVHFETQDAADRAIEKMNG--MLLNDRKVFVGRFKSRKEREAELGA 185
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN D+ +RLKELF+ +GK V + G+ + +GFV F + A
Sbjct: 186 KAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKG-FGFVSFEKHEDA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA++ +I+G+++ A+ + +++
Sbjct: 245 NKAVEEMNGKDINGKMVFVGRAQKKVERQ 273
Score = 137 (53.3 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 30/94 (31%), Positives = 51/94 (54%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ D D+ L+ G+ V++M +G++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V+F E A++A+EE+N ++ GK + AQ K
Sbjct: 236 VSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKK 269
Score = 125 (49.1 bits), Expect = 0.00013, P = 0.00013
Identities = 49/207 (23%), Positives = 98/207 (47%)
Query: 187 KGKKIKCSAAQAKHRLFIGNVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQN 242
K +K + + AK + F +N+G+D D +++ +K G +S++++ DP ++
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGK-TLSVKVMTDP--TGKS 230
Query: 243 RGFAFIEYYNHACAEYSRQKMS----NPKF--------KLDDNAPTVSWADPRNAESSAA 290
+GF F+ + H A + ++M+ N K K++ A + E +
Sbjct: 231 KGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISR 290
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
Q LY+KNL I ++L++ F+ G IT + + G+ + +GFV F+ A K
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKG-FGFVCFSSPEEATK 348
Query: 351 ALKNTEKYEIDGQVLDCSLAKPQADQK 377
A+ + + L +LA+ + ++K
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERK 375
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 209 (78.6 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 67/271 (24%), Positives = 127/271 (46%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +RI + + + YA+V F+ + A A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKA----VTKIGPGVISIE 231
+N +KGK ++ +Q L +GN+ +N + KA V+ G ++S
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG-NILSCN 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESS 288
+V D N ++G+ F+ + H AE + +KM+ L+ V R AE
Sbjct: 130 VVCDE---NGSKGYGFVHFETHEAAERAIKKMNG--MLLNGRKVFVGQFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +D+ +RLK+LF G V + + G+ + +GFV F
Sbjct: 185 ARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A KA+ E++G+ + A+ + +++T
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 144 (55.7 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV K++ AEL A VY+ D D+ L+ G V++M
Sbjct: 167 KVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD- 225
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
+SG++KG+ FV+F E A +A++E+N EL GK+I AQ K
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 118 (46.6 bits), Expect = 0.00030, P = 0.00030
Identities = 41/186 (22%), Positives = 89/186 (47%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++G++ + E + + + GP ++SI + +D + + +A++ + + AE++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRICRDLITSGSSN-YAYVNFQHTKDAEHALD 70
Query: 262 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
M+ F + P + W+ R+ S S V ++VKNL K I L + + G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNI 125
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 380
+ + G + YGFVHF +A +A+K ++G+ + K + +++
Sbjct: 126 LSCNVVCDENGSKG--YGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAEL 183
Query: 381 GSNSQK 386
G+ +++
Sbjct: 184 GARAKE 189
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 215 (80.7 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 68/270 (25%), Positives = 130/270 (48%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNVPRNWGEDDM-RKAV----TKIGPGVISIE 231
+N +KG+ I+ +Q L +GN+ ED + KA+ + G ++S +
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS-WADPRNAE---S 287
+V D + RGF F+ + H A+ + M+ L+D V + R E
Sbjct: 130 VVCDEHGS---RGFGFVHFETHEAAQNAISTMNG--MLLNDRKVFVGHFKSRREREVELG 184
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+ A + +YVKNL D+ + RL++LF+ GK+ V + G R +GFV+F +
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRG-FGFVNFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+ N E+ G++L A+ + +++
Sbjct: 244 AQKAVVNMNGREVSGRLLYVGRAQKRVERQ 273
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 192 (72.6 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 63/245 (25%), Positives = 114/245 (46%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +RI + + + YA+V F+ + A A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKA----VTKIGPGVISIE 231
+N +KGK ++ +Q L +GN+ +N + KA V+ G ++S
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG-NILSCN 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESS 288
+V D N ++G+ F+ + H AE + +KM+ L+ V R AE
Sbjct: 130 VVCDE---NGSKGYGFVHFETHEAAERAIKKMNG--MLLNGRKVFVGQFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +D+ +RLK+LF G V + + G+ + +GFV F
Sbjct: 185 ARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHED 243
Query: 348 AMKAL 352
A KA+
Sbjct: 244 AQKAV 248
Score = 118 (46.6 bits), Expect = 0.00015, P = 0.00015
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 205
D +KGY FV F T E A +AI+++N L G+K+ K A+ A+ + F
Sbjct: 133 DENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN 192
Query: 206 NVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+N+GED D ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 249
Query: 262 KMS 264
+M+
Sbjct: 250 EMN 252
Score = 118 (46.6 bits), Expect = 0.00015, P = 0.00015
Identities = 41/186 (22%), Positives = 89/186 (47%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++G++ + E + + + GP ++SI + +D + + +A++ + + AE++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRICRDLITSGSSN-YAYVNFQHTKDAEHALD 70
Query: 262 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
M+ F + P + W+ R+ S S V ++VKNL K I L + + G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNI 125
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 380
+ + G + YGFVHF +A +A+K ++G+ + K + +++
Sbjct: 126 LSCNVVCDENGSKG--YGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAEL 183
Query: 381 GSNSQK 386
G+ +++
Sbjct: 184 GARAKE 189
Score = 115 (45.5 bits), Expect = 0.00034, P = 0.00034
Identities = 28/90 (31%), Positives = 44/90 (48%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV K++ AEL A VY+ D D+ L+ G V++M
Sbjct: 167 KVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD- 225
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCE 185
+SG++KG+ FV+F E A +A++E+N E
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 214 (80.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 68/266 (25%), Positives = 126/266 (47%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNVPRNWGEDDM-RKAVTKIGPGVISIELVKD 235
+N LKG+ I+ +Q L +GN+ ED + KA+ +I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 236 PQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESSA-AS 291
+ + +RGF F+ + H A+ + M+ L+D V R AE A A
Sbjct: 131 ACDEHGSRGFGFVHFETHEAAQQAINTMNG--MLLNDRKVFVGHFKSRREREAELGARAL 188
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+ +YVKNLP D+ + L++LF+ GK+ V + G R +GFV+F + A KA
Sbjct: 189 EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEEAQKA 247
Query: 352 LKNTEKYEIDGQVLDCSLAKPQADQK 377
+ + E+ G++L A+ + +++
Sbjct: 248 VVHMNGKEVSGRLLYAGRAQKRVERQ 273
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 144 (55.7 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 39/133 (29%), Positives = 67/133 (50%)
Query: 126 GIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE---LN 182
GIP D D L+ + G++ + +MK + +G ++G+ +VTF + E A A++ L
Sbjct: 9 GIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGEHFLG 68
Query: 183 S--CELKGKKIKCSAAQ-AKH--RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
+ E+K K Q AK R+F+ +P + E D R + G + + + KD
Sbjct: 69 NRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGE-ITDLYMPKD-Y 126
Query: 238 NANQNRGFAFIEY 250
N+ Q+RG FI +
Sbjct: 127 NSKQHRGIGFITF 139
Score = 135 (52.6 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 37/177 (20%), Positives = 84/177 (47%)
Query: 199 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEY 258
+ +L + +P + D ++ ++K G I ++KD ++ ++RGF ++ + A AE
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCI-VMKD-RSTGRSRGFGYVTF---ASAED 56
Query: 259 SRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 318
++ + F L + V A P+ A +V ++V +P +++ + F +G
Sbjct: 57 AKNALKGEHF-LGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYG 115
Query: 319 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375
+IT + +P ++ GF+ F+ S +++T +++ G + A P+ D
Sbjct: 116 EITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT--HDLGGTTVAVDRATPKED 170
Score = 112 (44.5 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 31/100 (31%), Positives = 49/100 (49%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIP--PAKPGQERSRYGFVHFAERSSAMKALK 353
++V LP++ + D L++ F G I IP P + G +GFV FAE A + +
Sbjct: 242 IFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRG--FGFVTFAENGVADRVAR 299
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 393
+ +EI GQ + A P + S G++S S+ P Y
Sbjct: 300 RS--HEICGQEVAIDSATPLDEAGPSAGASSMLSSSRPEY 337
Score = 95 (38.5 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 24/113 (21%), Positives = 56/113 (49%)
Query: 87 KHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEV 146
+H+ G+ ++V + +E ++ A+ + + +++ IP S+ D R + GE+
Sbjct: 64 EHFLGNRILEVKVATPKEEMRQPAKKV------TRIFVARIPSSVSESDFRSHFERYGEI 117
Query: 147 TEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
T++ + K +S + +G F+TF + + +E+ + +L G + A K
Sbjct: 118 TDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTH--DLGGTTVAVDRATPK 168
Score = 81 (33.6 bits), Expect = 9.3e-06, Sum P(2) = 9.3e-06
Identities = 24/101 (23%), Positives = 49/101 (48%)
Query: 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE-Y 258
+++F+G +P+ DD+R + G + + KDP+ + +RGF F+ + + A+
Sbjct: 240 NKIFVGRLPQEASVDDLRDYFGRFGH-IQDAYIPKDPKRSG-HRGFGFVTFAENGVADRV 297
Query: 259 SRQ--KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALY 297
+R+ ++ + +D P + A P SS S + Y
Sbjct: 298 ARRSHEICGQEVAIDSATP-LDEAGPSAGASSMLSSSRPEY 337
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 214 (80.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 70/269 (26%), Positives = 131/269 (48%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KGK I+ +Q L +GNV +N + KA+ T G ++S ++
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N ++G+AF+ + A+ + +KM+ L+D V R AE A
Sbjct: 131 VCDE---NGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELGA 185
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + + A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHEDA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA++ EI G+V+ A+ + +++
Sbjct: 245 NKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 145 (56.1 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 31/94 (32%), Positives = 53/94 (56%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D++L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKK 269
Score = 131 (51.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 48/207 (23%), Positives = 99/207 (47%)
Query: 187 KGKKIKCSAAQAKHRLFIGNVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQN 242
K +K + + AK + F +N+GE DD +++ ++ G +S+++++DP + ++
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGK-TLSVKVMRDP--SGKS 230
Query: 243 RGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAPTVSWADPRNAESSAA 290
+GF F+ Y H A + ++M+ + K++ A + E +
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
Q LY+KNL I ++L++ F+ G IT + + G+ + +GFV F+ A K
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKG-FGFVCFSSPEEATK 348
Query: 351 ALKNTEKYEIDGQVLDCSLAKPQADQK 377
A+ + + L +LA+ + ++K
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERK 375
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 214 (80.4 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 68/272 (25%), Positives = 132/272 (48%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + + GYA V F+ E A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK ++ +Q L F+ N+ R+ + + G ++S +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV----SWADPRNAES 287
+V D N ++G+ F+ + AE + +KM N F L+D V S D R AE
Sbjct: 130 VVCDE---NGSKGYGFVHFETQEEAERAIEKM-NGMF-LNDRKVFVGRFKSRRD-RQAEL 183
Query: 288 SA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346
A A + +Y+KNL +D+ +RL++LF+ G V + + G+ + +GFV F
Sbjct: 184 GARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKG-FGFVSFERHE 242
Query: 347 SAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A KA+ +++G+ + A+ + +++T
Sbjct: 243 DARKAVDEMNGKDLNGKQIYVGRAQKKVERQT 274
Score = 138 (53.6 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
+ + AEL A + VY+ + D D+ L+ G V++M +SG++KG+ F
Sbjct: 177 RDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTD-ESGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V+F E A +A++E+N +L GK+I AQ K
Sbjct: 236 VSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKK 269
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 213 (80.0 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 70/269 (26%), Positives = 131/269 (48%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KGK I+ +Q L +GNV +N + KA+ T G ++S ++
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N ++G+AF+ + A+ + +KM+ L+D V R AE A
Sbjct: 131 VCDE---NGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELGA 185
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + + A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHEDA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA++ EI G+V+ A+ + +++
Sbjct: 245 NKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 144 (55.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 31/94 (32%), Positives = 52/94 (55%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D+ L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKK 269
Score = 131 (51.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 48/207 (23%), Positives = 99/207 (47%)
Query: 187 KGKKIKCSAAQAKHRLFIGNVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQN 242
K +K + + AK + F +N+GE DD +++ ++ G +S+++++DP + ++
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDP--SGKS 230
Query: 243 RGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAPTVSWADPRNAESSAA 290
+GF F+ Y H A + ++M+ + K++ A + E +
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
Q LY+KNL I ++L++ F+ G IT + + G+ + +GFV F+ A K
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKG-FGFVCFSSPEEATK 348
Query: 351 ALKNTEKYEIDGQVLDCSLAKPQADQK 377
A+ + + L +LA+ + ++K
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERK 375
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 209 (78.6 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 68/262 (25%), Positives = 125/262 (47%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P+ + D+L+ + + E+R++ KD G++KG A++ F+T+ A + +EE E+
Sbjct: 322 LPYKVTQDELKEVFE---DAVEIRLVS-KD-GKSKGIAYIEFKTEADAEKTLEEKQGTEI 376
Query: 187 K--GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL---------VKD 235
G+K HR G W + ++ + L +K
Sbjct: 377 DYTGEK----GQSQDHR---GGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATHIKV 429
Query: 236 PQNAN-QNRGFAFIEYYNHACAEYSRQKMSN-PKFKLDDNAPTVSWADPRNAESSAASQV 293
PQN N +++G+AFIE+ A E +++ +++ K +++ A + PR + ++ +
Sbjct: 430 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 486
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+VK L +D T++ LKE F G I ++ + G + +GFV F A A +
Sbjct: 487 KTLFVKGLSEDTTEETLKESF--DGSIRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKE 543
Query: 354 NTEKYEIDGQVLDCSLAKPQAD 375
E EIDG + AKP+ +
Sbjct: 544 AMEDGEIDGNKVTLDWAKPKGE 565
Score = 139 (54.0 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 37/170 (21%), Positives = 89/170 (52%)
Query: 124 LGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS 183
L + + A+++ L+ + + T +++ + ++ G++KGYAF+ F + E A +A+ N
Sbjct: 405 LSNLSYSATEETLQEVFE---KATHIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNK 460
Query: 184 CELKGKKIKC----------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
E++G+ I+ + +Q LF+ + + E+ ++++ G I +V
Sbjct: 461 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD----GSIRARIV 516
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 283
D + + ++GF F+++ + A+ +++ M + + +D N T+ WA P+
Sbjct: 517 TDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDGE--IDGNKVTLDWAKPK 563
Score = 129 (50.5 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 55/224 (24%), Positives = 96/224 (42%)
Query: 169 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
R KE+A Q E K +K++ + LF+GN+ N +++ ++ +
Sbjct: 202 RKKEMAKQKAAP----EAKKQKVEGTEPTTSFNLFVGNLNFNKSAPELKTGISDL---FA 254
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
+L +R F ++++ + AE + + K+ N + P+ +S
Sbjct: 255 KNDLAVVDVRIGVSRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSK 309
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
+ L KNLP +TQD LKE+F +I V +K G+ + ++ F + A
Sbjct: 310 KDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKTEADA 364
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT 392
K L+ EK G +D + K Q+ Q GG NS S + T
Sbjct: 365 EKTLE--EK---QGTEIDYTGEKGQS-QDHRGGKNSTWSGESKT 402
Score = 46 (21.3 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKHA 110
D D H D +EE + E ++++E K A
Sbjct: 169 DDDDEDDHDDEEEEEEEEEEEEEEEPVKEA 198
Score = 41 (19.5 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 84 DAQKHYDGDEEMKVAESDKDDE 105
D + D D++ + E D DDE
Sbjct: 152 DEDEEDDDDDDEEEEEEDDDDE 173
Score = 40 (19.1 bits), Expect = 9.3e-14, Sum P(2) = 9.3e-14
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 28 ESEERVDLDEDNDH 41
E EE D D+++DH
Sbjct: 163 EEEEEEDDDDEDDH 176
Score = 40 (19.1 bits), Expect = 9.3e-14, Sum P(2) = 9.3e-14
Identities = 20/58 (34%), Positives = 26/58 (44%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDE---KKKHAELLALPPHGSEVYLGGIPHDASDDD 135
+G +A+K D DEE E DK+DE +K A A P E + DDD
Sbjct: 60 NGKNARKE-DSDEE---DEDDKEDEPAVRKAAAAFGAAPATDDE------DDEDDDDD 107
Score = 38 (18.4 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 84 DAQKHYDGDEEMKVA----ESDKDDEKKKHAE 111
D + D DEE + E D DDE+++ E
Sbjct: 154 DEEDDDDDDEEEEEEDDDDEDDHDDEEEEEEE 185
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 213 (80.0 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 70/269 (26%), Positives = 131/269 (48%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KGK I+ +Q L +GNV +N + KA+ T G ++S ++
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N ++G+AF+ + A+ + +KM+ L+D V R AE A
Sbjct: 131 VCDE---NGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELGA 185
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + + A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHEDA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA++ EI G+V+ A+ + +++
Sbjct: 245 NKAVEEMNGKEITGKVIFVGRAQKKVERQ 273
Score = 144 (55.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 31/94 (32%), Positives = 53/94 (56%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D++L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKK 269
Score = 131 (51.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 48/207 (23%), Positives = 99/207 (47%)
Query: 187 KGKKIKCSAAQAKHRLFIGNVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQN 242
K +K + + AK + F +N+GE DD +++ ++ G +S+++++DP + ++
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGK-TLSVKVMRDP--SGKS 230
Query: 243 RGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAPTVSWADPRNAESSAA 290
+GF F+ Y H A + ++M+ + K++ A + E +
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
Q LY+KNL I ++L++ F+ G IT + + G+ + +GFV F+ A K
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKG-FGFVCFSSPEEATK 348
Query: 351 ALKNTEKYEIDGQVLDCSLAKPQADQK 377
A+ + + L +LA+ + ++K
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERK 375
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 209 (78.6 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 68/262 (25%), Positives = 125/262 (47%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P+ + D+L+ + + E+R++ KD G++KG A++ F+T+ A + +EE E+
Sbjct: 327 LPYKVTQDELKEVFE---DAVEIRLVS-KD-GKSKGIAYIEFKTEADAEKTLEEKQGTEI 381
Query: 187 K--GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL---------VKD 235
G+K HR G W + ++ + L +K
Sbjct: 382 DYTGEK----GQSQDHR---GGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATHIKV 434
Query: 236 PQNAN-QNRGFAFIEYYNHACAEYSRQKMSN-PKFKLDDNAPTVSWADPRNAESSAASQV 293
PQN N +++G+AFIE+ A E +++ +++ K +++ A + PR + ++ +
Sbjct: 435 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 491
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+VK L +D T++ LKE F G I ++ + G + +GFV F A A +
Sbjct: 492 KTLFVKGLSEDTTEETLKESF--DGSIRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKE 548
Query: 354 NTEKYEIDGQVLDCSLAKPQAD 375
E EIDG + AKP+ +
Sbjct: 549 AMEDGEIDGNKVTLDWAKPKGE 570
Score = 139 (54.0 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 37/170 (21%), Positives = 89/170 (52%)
Query: 124 LGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS 183
L + + A+++ L+ + + T +++ + ++ G++KGYAF+ F + E A +A+ N
Sbjct: 410 LSNLSYSATEETLQEVFE---KATHIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNK 465
Query: 184 CELKGKKIKC----------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
E++G+ I+ + +Q LF+ + + E+ ++++ G I +V
Sbjct: 466 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD----GSIRARIV 521
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 283
D + + ++GF F+++ + A+ +++ M + + +D N T+ WA P+
Sbjct: 522 TDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDGE--IDGNKVTLDWAKPK 568
Score = 129 (50.5 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 55/224 (24%), Positives = 96/224 (42%)
Query: 169 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
R KE+A Q E K +K++ + LF+GN+ N +++ ++ +
Sbjct: 207 RKKEMAKQKAAP----EAKKQKVEGTEPTTSFNLFVGNLNFNKSAPELKTGISDL---FA 259
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
+L +R F ++++ + AE + + K+ N + P+ +S
Sbjct: 260 KNDLAVVDVRIGVSRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSK 314
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
+ L KNLP +TQD LKE+F +I V +K G+ + ++ F + A
Sbjct: 315 KDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKTEADA 369
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT 392
K L+ EK G +D + K Q+ Q GG NS S + T
Sbjct: 370 EKTLE--EK---QGTEIDYTGEKGQS-QDHRGGKNSTWSGESKT 407
Score = 46 (21.3 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKHA 110
D D H D +EE + E ++++E K A
Sbjct: 174 DDDDEDDHDDEEEEEEEEEEEEEEEPVKEA 203
Score = 43 (20.2 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDD 135
+G +A+K D DEE + +S+++D++ + A A G+ + DDD
Sbjct: 60 NGKNARKE-DSDEEDE-DDSEEEDDEDEPAVRKAAAAFGAAPATDDEDDEDDDDD 112
Score = 41 (19.5 bits), Expect = 7.5e-14, Sum P(2) = 7.5e-14
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 84 DAQKHYDGDEEMKVAESDKDDE 105
D + D D++ + E D DDE
Sbjct: 157 DEDEEDDDDDDEEEEEEDDDDE 178
Score = 40 (19.1 bits), Expect = 9.5e-14, Sum P(2) = 9.5e-14
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 28 ESEERVDLDEDNDH 41
E EE D D+++DH
Sbjct: 168 EEEEEEDDDDEDDH 181
Score = 38 (18.4 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 84 DAQKHYDGDEEMKVA----ESDKDDEKKKHAE 111
D + D DEE + E D DDE+++ E
Sbjct: 159 DEEDDDDDDEEEEEEDDDDEDDHDDEEEEEEE 190
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 212 (79.7 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 68/270 (25%), Positives = 130/270 (48%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + DA++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KGK ++ +Q L +GN+ +N + KA+ T G ++S ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N ++G+ F+ + AE + +KM+ L+D V R AE A
Sbjct: 131 VCDE---NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELGA 185
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN +D+ +RLK+LF G V + + G+ + +GFV F A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
KA+ E++G+ + A+ + +++T
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 145 (56.1 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 33/94 (35%), Positives = 51/94 (54%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ D D+ L+ G V++M +SG++KG+ F
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V+F E A +A++E+N EL GK+I AQ K
Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 120 (47.3 bits), Expect = 0.00047, P = 0.00047
Identities = 41/186 (22%), Positives = 90/186 (48%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++G++ + E + + + GP ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGP-ILSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 262 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 380
+ + G + YGFVHF + +A +A++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 381 GSNSQK 386
G+ +++
Sbjct: 184 GARAKE 189
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 212 (79.7 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 64/270 (23%), Positives = 128/270 (47%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + +D L G+V VR+ + + + GY +V + T + AS+A+
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 180 ELNSCELKGKKIKC--SAAQAKHR------LFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
ELN L G+ I+ S R +FI N+ ++ + + + GP ++S +
Sbjct: 105 ELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGP-ILSCK 163
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ DP + Q++G+ F++Y A+ + K++ L+D V + +
Sbjct: 164 VAVDP--SGQSKGYGFVQYDTDEAAQGAIDKLNG--MLLNDKQVYVGPFVHKLQRDPSGE 219
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSA 348
+VK +YVKNL + ++ + L ++F G T VI + G+ +S+ +GFV+F A
Sbjct: 220 KVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVI--MRDGEGKSKGFGFVNFENSDDA 277
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
+A+ D + A+ +++++T
Sbjct: 278 ARAVDALNGKTFDDKEWFVGKAQKKSERET 307
Score = 130 (50.8 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 52/209 (24%), Positives = 93/209 (44%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+++ N+ + ++++ K + G S +++D + +++GF F+ + N A +
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGV-TTSCVIMRDGEG--KSKGFGFVNFENSDDAARAVD 282
Query: 262 KMSNPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQ 307
++ F DD V A ++ E++ SQ LYVKNL + +T
Sbjct: 283 ALNGKTF--DDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTD 340
Query: 308 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367
D+L+E FA G IT + G R GFV F+ A +A+ I + L
Sbjct: 341 DKLREHFAPFGTITSCKVMRDPSGVSRGS-GFVAFSTPEEATRAITEMNGKMIVTKPLYV 399
Query: 368 SLAKPQADQKTSGGSNSQKSALNPT-YPP 395
+LA+ + D+K +Q S + P PP
Sbjct: 400 ALAQRKEDRKAR--LQAQFSQMRPVNMPP 426
Score = 125 (49.1 bits), Expect = 0.00014, P = 0.00014
Identities = 38/121 (31%), Positives = 60/121 (49%)
Query: 87 KHYDGDEEMKVAESDKDDE-----KKKHAELL---ALPPHGSEVYLGGIPHDASDDDLRH 138
K +D D+E V ++ K E K+K + L A GS +Y+ + +DD LR
Sbjct: 287 KTFD-DKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLRE 345
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
G +T ++M+ SG ++G FV F T E A++AI E+N + K + + AQ
Sbjct: 346 HFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQR 404
Query: 199 K 199
K
Sbjct: 405 K 405
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 211 (79.3 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 69/269 (25%), Positives = 131/269 (48%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KGK I+ +Q L +GNV +N + KA+ T G ++S ++
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N ++G+AF+ + A+ + +KM+ L+D V R AE A
Sbjct: 131 VCDE---NGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELGA 185
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + + A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKG-FGFVSYEKHEDA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA++ EI G+++ A+ + +++
Sbjct: 245 NKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
Score = 140 (54.3 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 30/94 (31%), Positives = 52/94 (55%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D+ L+ G+ V++M+ + G++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
Score = 130 (50.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 48/207 (23%), Positives = 98/207 (47%)
Query: 187 KGKKIKCSAAQAKHRLFIGNVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQN 242
K +K + + AK + F +N+GE DD +++ ++ G +S+++++DP ++
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDPNG--KS 230
Query: 243 RGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAPTVSWADPRNAESSAA 290
+GF F+ Y H A + ++M+ + K++ A + E +
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
Q LY+KNL I ++L++ F+ G IT + + G+ + +GFV F+ A K
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKG-FGFVCFSSPEEATK 348
Query: 351 ALKNTEKYEIDGQVLDCSLAKPQADQK 377
A+ + + L +LA+ + ++K
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERK 375
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 211 (79.3 bits), Expect = 3.6e-14, P = 3.6e-14
Identities = 68/270 (25%), Positives = 129/270 (47%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KGK ++ +Q L +GN+ +N + KA+ T G ++S ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N ++G+ F+ + AE + +KM+ L+D V R AE A
Sbjct: 131 VCDE---NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELGA 185
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN +D+ +RLKELF G V + + G+ + +GFV F A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
KA+ E++G+ + A+ + +++T
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 146 (56.5 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 33/94 (35%), Positives = 51/94 (54%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ D D+ L+ G V++M +SG++KG+ F
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V+F E A +A++E+N EL GK+I AQ K
Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 120 (47.3 bits), Expect = 0.00047, P = 0.00047
Identities = 41/186 (22%), Positives = 90/186 (48%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++G++ + E + + + GP ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 262 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 380
+ + G + YGFVHF + +A +A++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 381 GSNSQK 386
G+ +++
Sbjct: 184 GARAKE 189
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 211 (79.3 bits), Expect = 3.6e-14, P = 3.6e-14
Identities = 68/270 (25%), Positives = 129/270 (47%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KGK ++ +Q L +GN+ +N + KA+ T G ++S ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N ++G+ F+ + AE + +KM+ L+D V R AE A
Sbjct: 131 VCDE---NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELGA 185
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN +D+ +RLKELF G V + + G+ + +GFV F A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
KA+ E++G+ + A+ + +++T
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 146 (56.5 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 33/94 (35%), Positives = 51/94 (54%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ D D+ L+ G V++M +SG++KG+ F
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V+F E A +A++E+N EL GK+I AQ K
Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 120 (47.3 bits), Expect = 0.00047, P = 0.00047
Identities = 41/186 (22%), Positives = 90/186 (48%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++G++ + E + + + GP ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 262 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 380
+ + G + YGFVHF + +A +A++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 381 GSNSQK 386
G+ +++
Sbjct: 184 GARAKE 189
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 211 (79.3 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 69/269 (25%), Positives = 131/269 (48%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KGK I+ +Q L +GNV +N + KA+ T G ++S ++
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N ++G+AF+ + A+ + +KM+ L+D V R AE A
Sbjct: 131 VCDE---NGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELGA 185
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + + A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKG-FGFVSYEKHEDA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA++ EI G+++ A+ + +++
Sbjct: 245 NKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
Score = 140 (54.3 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 30/94 (31%), Positives = 52/94 (55%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D+ L+ G+ V++M+ + G++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
Score = 130 (50.8 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 48/207 (23%), Positives = 98/207 (47%)
Query: 187 KGKKIKCSAAQAKHRLFIGNVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQN 242
K +K + + AK + F +N+GE DD +++ ++ G +S+++++DP ++
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-TLSVKVMRDPNG--KS 230
Query: 243 RGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAPTVSWADPRNAESSAA 290
+GF F+ Y H A + ++M+ + K++ A + E +
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
Q LY+KNL I ++L++ F+ G IT + + G+ + +GFV F+ A K
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKG-FGFVCFSSPEEATK 348
Query: 351 ALKNTEKYEIDGQVLDCSLAKPQADQK 377
A+ + + L +LA+ + ++K
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERK 375
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 205 (77.2 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 62/268 (23%), Positives = 130/268 (48%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++D L ++G V +RI + S + GY +V F A +A+E
Sbjct: 10 ASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALE 69
Query: 180 ELNSCELKGKKIKCSAAQAK---HRLFIGNV-PRNWGED-DMRKAVTKIGP-G-VISIEL 232
+N +KGK I+ +Q + IGNV +N + D + P G ++S ++
Sbjct: 70 TMNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKV 129
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA-- 290
+ D + + +G+ F+ Y + A+ + ++M N K D + ++ E+
Sbjct: 130 MTDEEGS---KGYGFVHYQDQRAADRAIEEM-NGKLLRDSTLFVARFKSRKDREAELREK 185
Query: 291 -SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
++ +Y+KN D+ + L+ +F+ +G+ V + G+ + R+GFV F +A
Sbjct: 186 PAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSK-RFGFVSFDSHKAAK 244
Query: 350 KALKNTEKYEIDGQVLDCSLAKPQADQK 377
A+++ +I+GQ + A+ + +++
Sbjct: 245 NAVEDMNGRDINGQTIFVGRAQKKVERQ 272
Score = 136 (52.9 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 30/94 (31%), Positives = 49/94 (52%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K + AEL P + VY+ D D+ LR G+ V++MK SG++K + F
Sbjct: 176 KDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDA-SGKSKRFGF 234
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V+F + + A A+E++N ++ G+ I AQ K
Sbjct: 235 VSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKK 268
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 210 (79.0 bits), Expect = 4.7e-14, P = 4.7e-14
Identities = 64/270 (23%), Positives = 132/270 (48%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KG+ ++ +Q L +GN+ +N + KA+ T G ++S ++
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N ++G+ F+ + AE + +KM+ L+D V R AE A
Sbjct: 131 VCDE---NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELGA 185
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN +D+ D+LK++F+ +G + + + G+ R +GFV F A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRG-FGFVSFERHEDA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
+A+ E++G+++ A+ + +++T
Sbjct: 245 QRAVDEMNGKEMNGKLIYVGRAQKKVERQT 274
Score = 143 (55.4 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ D DD L+ G +R+M ++G+++G+ F
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD-ENGKSRGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V+F E A +A++E+N E+ GK I AQ K
Sbjct: 236 VSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKK 269
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 212 (79.7 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 60/275 (21%), Positives = 135/275 (49%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L ++G V+ +R+ + + ++ GYA+V + A +A++
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 180 ELNSCELKGK--KIKCSAAQAKHR------LFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN +KG+ ++ S R +F+ N+ ++ + + G ++S +
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFG-NILSCK 134
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D +++ + F+ Y + A+ + +K++ +L V ++ ++ +
Sbjct: 135 VATD--EFGKSKSYGFVHYEDEESAKEAIEKVNG--VQLGSKNVYVGPFIKKSERATNDT 190
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+ LYVKN P +T+ L++LF +G+IT +++ K + ++ F+++A+ SA A
Sbjct: 191 KFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIV---KMDNKNRKFCFINYADAESAKNA 247
Query: 352 LKNTEKYEI--DGQVLDC-SLAKPQADQKTSGGSN 383
+ N +I DGQ+ + K +A TSG +N
Sbjct: 248 MDNLNGKKITDDGQIDETYDPKKEEATASTSGAAN 282
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 212 (79.7 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 60/275 (21%), Positives = 135/275 (49%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L ++G V+ +R+ + + ++ GYA+V + A +A++
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 180 ELNSCELKGK--KIKCSAAQAKHR------LFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN +KG+ ++ S R +F+ N+ ++ + + G ++S +
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFG-NILSCK 134
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D +++ + F+ Y + A+ + +K++ +L V ++ ++ +
Sbjct: 135 VATD--EFGKSKSYGFVHYEDEESAKEAIEKVNG--VQLGSKNVYVGPFIKKSERATNDT 190
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+ LYVKN P +T+ L++LF +G+IT +++ K + ++ F+++A+ SA A
Sbjct: 191 KFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIV---KMDNKNRKFCFINYADAESAKNA 247
Query: 352 LKNTEKYEI--DGQVLDC-SLAKPQADQKTSGGSN 383
+ N +I DGQ+ + K +A TSG +N
Sbjct: 248 MDNLNGKKITDDGQIDETYDPKKEEATASTSGAAN 282
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 210 (79.0 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 71/269 (26%), Positives = 130/269 (48%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KGK I+ +Q L +GNV +N + KA+ T G ++S ++
Sbjct: 72 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 131
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N ++G+AF+ + A+ + +KM+ L+D V R AE A
Sbjct: 132 VCDE---NGSKGYAFVHFETQDAADRAIEKMNG--MLLNDRKVFVGRFKSRKEREAEMGA 186
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN D+ RLKELF +GK V + G+ R +GFV + + A
Sbjct: 187 KAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRG-FGFVSYEKHEDA 245
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA++ E++G+ + A+ + +++
Sbjct: 246 NKAVEEMNGTELNGKTVFVGRAQKKMERQ 274
Score = 133 (51.9 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 29/94 (30%), Positives = 50/94 (53%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AE+ A + VY+ D D L+ G+ V++M +G+++G+ F
Sbjct: 178 KEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGF 236
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V++ E A++A+EE+N EL GK + AQ K
Sbjct: 237 VSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKK 270
Score = 131 (51.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 53/207 (25%), Positives = 97/207 (46%)
Query: 187 KGKKIKCSAAQAKHRLFIGNVPRNWGED--DMR--KAVTKIGPGVISIELVKDPQNANQN 242
K +K + + AK + F +N+G+D D R + K G +S++++ DP ++
Sbjct: 175 KSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGK-TLSVKVMTDP--TGKS 231
Query: 243 RGFAFIEYYNHACAEYSRQKMS----NPK--F------KLDDNAPTVSWADPRNAESSAA 290
RGF F+ Y H A + ++M+ N K F K++ A + E +
Sbjct: 232 RGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISR 291
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
Q LY+KNL I ++L++ F+ G IT + + G+ + +GFV F+ A K
Sbjct: 292 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEEGRSKG-FGFVCFSSPEEATK 349
Query: 351 ALKNTEKYEIDGQVLDCSLAKPQADQK 377
A+ + + L +LA+ + ++K
Sbjct: 350 AVTEMNGRIVGSKPLYVALAQRKEERK 376
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 209 (78.6 bits), Expect = 6.1e-14, P = 6.1e-14
Identities = 67/271 (24%), Positives = 127/271 (46%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +RI + + + YA+V F+ + A A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKA----VTKIGPGVISIE 231
+N +KGK ++ +Q L +GN+ +N + KA V+ G ++S
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG-NILSCN 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESS 288
+V D N ++G+ F+ + H AE + +KM+ L+ V R AE
Sbjct: 130 VVCDE---NGSKGYGFVHFETHEAAERAIKKMNG--MLLNGRKVFVGQFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +D+ +RLK+LF G V + + G+ + +GFV F
Sbjct: 185 ARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A KA+ E++G+ + A+ + +++T
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 144 (55.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV K++ AEL A VY+ D D+ L+ G V++M
Sbjct: 167 KVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD- 225
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
+SG++KG+ FV+F E A +A++E+N EL GK+I AQ K
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 119 (46.9 bits), Expect = 0.00059, P = 0.00059
Identities = 47/209 (22%), Positives = 96/209 (45%)
Query: 185 ELKGKKIKCSAAQAKHRLFIGNVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNAN 240
+ K +K + + A+ + F +N+GED D ++ K GP +S++++ D +
Sbjct: 172 QFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESG 228
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAPTVSWADPRNAESS 288
+++GF F+ + H A+ + +M+ + K++ + +
Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRI 288
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
QV LYVKNL I +RL++ F+ G IT + + G+ + +GFV F+ A
Sbjct: 289 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVM-MEGGRSKG-FGFVCFSSPEEA 346
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA+ + + L +LA+ + +++
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 118 (46.6 bits), Expect = 0.00077, P = 0.00077
Identities = 41/186 (22%), Positives = 89/186 (47%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++G++ + E + + + GP ++SI + +D + + +A++ + + AE++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRICRDLITSGSSN-YAYVNFQHTKDAEHALD 70
Query: 262 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
M+ F + P + W+ R+ S S V ++VKNL K I L + + G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNI 125
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 380
+ + G + YGFVHF +A +A+K ++G+ + K + +++
Sbjct: 126 LSCNVVCDENGSKG--YGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAEL 183
Query: 381 GSNSQK 386
G+ +++
Sbjct: 184 GARAKE 189
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 208 (78.3 bits), Expect = 7.1e-14, P = 7.1e-14
Identities = 67/270 (24%), Positives = 129/270 (47%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KGK ++ +Q L +GN+ +N + KA+ T G ++S ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N ++G+ F+ + AE + +KM+ L+D V R AE A
Sbjct: 131 VCDE---NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELGA 185
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN +D+ +RLK+LF G V + + G+ + +GFV F A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
KA+ E++G+ + A+ + +++T
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 145 (56.1 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 33/94 (35%), Positives = 51/94 (54%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ D D+ L+ G V++M +SG++KG+ F
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V+F E A +A++E+N EL GK+I AQ K
Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 120 (47.3 bits), Expect = 0.00043, P = 0.00043
Identities = 41/186 (22%), Positives = 90/186 (48%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++G++ + E + + + GP ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 262 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 380
+ + G + YGFVHF + +A +A++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 381 GSNSQK 386
G+ +++
Sbjct: 184 GARAKE 189
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 208 (78.3 bits), Expect = 7.4e-14, P = 7.4e-14
Identities = 70/270 (25%), Positives = 130/270 (48%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNVPRNWGEDDM-RKAV----TKIGPGVISIE 231
+N +KG+ I+ +Q L +GNV ED + KA+ + G ++S +
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D + RGF F+ + H A+ + + M+ L+D V R AE
Sbjct: 130 VVCDDHGS---RGFGFVHFETHEAAQNAIRTMNG--MLLNDRKVFVGHFKSRREREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +YVKNL D+ + L++LF+ GKI V + G R +GFV+F +
Sbjct: 185 ARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRG-FGFVNFEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+ + E+ G++L A+ + +++
Sbjct: 244 AQKAVTDMNGKEVSGRLLYVGRAQKRVERQ 273
Score = 118 (46.6 bits), Expect = 0.00073, P = 0.00073
Identities = 27/106 (25%), Positives = 53/106 (50%)
Query: 94 EMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMK 153
+ KV +++ AEL A + +Y+ + D + L+ G++ V++M+
Sbjct: 165 DRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMR 224
Query: 154 GKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
DSG ++G+ FV F E A +A+ ++N E+ G+ + AQ +
Sbjct: 225 D-DSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKR 269
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 208 (78.3 bits), Expect = 8.0e-14, P = 8.0e-14
Identities = 67/270 (24%), Positives = 129/270 (47%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KGK ++ +Q L +GN+ +N + KA+ T G ++S ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N ++G+ F+ + AE + +KM+ L+D V R AE A
Sbjct: 131 VCDE---NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELGA 185
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN +D+ +RLK+LF G V + + G+ + +GFV F A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
KA+ E++G+ + A+ + +++T
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 145 (56.1 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 33/94 (35%), Positives = 51/94 (54%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ D D+ L+ G V++M +SG++KG+ F
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V+F E A +A++E+N EL GK+I AQ K
Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 120 (47.3 bits), Expect = 0.00047, P = 0.00047
Identities = 41/186 (22%), Positives = 90/186 (48%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++G++ + E + + + GP ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 262 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 380
+ + G + YGFVHF + +A +A++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 381 GSNSQK 386
G+ +++
Sbjct: 184 GARAKE 189
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 208 (78.3 bits), Expect = 8.0e-14, P = 8.0e-14
Identities = 67/270 (24%), Positives = 129/270 (47%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KGK ++ +Q L +GN+ +N + KA+ T G ++S ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N ++G+ F+ + AE + +KM+ L+D V R AE A
Sbjct: 131 VCDE---NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELGA 185
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN +D+ +RLK+LF G V + + G+ + +GFV F A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
KA+ E++G+ + A+ + +++T
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 145 (56.1 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 33/94 (35%), Positives = 51/94 (54%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ D D+ L+ G V++M +SG++KG+ F
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V+F E A +A++E+N EL GK+I AQ K
Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 120 (47.3 bits), Expect = 0.00047, P = 0.00047
Identities = 41/186 (22%), Positives = 90/186 (48%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++G++ + E + + + GP ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 262 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 380
+ + G + YGFVHF + +A +A++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 381 GSNSQK 386
G+ +++
Sbjct: 184 GARAKE 189
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 208 (78.3 bits), Expect = 8.0e-14, P = 8.0e-14
Identities = 67/270 (24%), Positives = 129/270 (47%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KGK ++ +Q L +GN+ +N + KA+ T G ++S ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N ++G+ F+ + AE + +KM+ L+D V R AE A
Sbjct: 131 VCDE---NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELGA 185
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN +D+ +RLK+LF G V + + G+ + +GFV F A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
KA+ E++G+ + A+ + +++T
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 145 (56.1 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 33/94 (35%), Positives = 51/94 (54%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ D D+ L+ G V++M +SG++KG+ F
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V+F E A +A++E+N EL GK+I AQ K
Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 120 (47.3 bits), Expect = 0.00047, P = 0.00047
Identities = 41/186 (22%), Positives = 90/186 (48%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++G++ + E + + + GP ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 262 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 380
+ + G + YGFVHF + +A +A++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 381 GSNSQK 386
G+ +++
Sbjct: 184 GARAKE 189
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 208 (78.3 bits), Expect = 8.0e-14, P = 8.0e-14
Identities = 67/270 (24%), Positives = 129/270 (47%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KGK ++ +Q L +GN+ +N + KA+ T G ++S ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N ++G+ F+ + AE + +KM+ L+D V R AE A
Sbjct: 131 VCDE---NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELGA 185
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN +D+ +RLK+LF G V + + G+ + +GFV F A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
KA+ E++G+ + A+ + +++T
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 145 (56.1 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 33/94 (35%), Positives = 51/94 (54%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ D D+ L+ G V++M +SG++KG+ F
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V+F E A +A++E+N EL GK+I AQ K
Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 120 (47.3 bits), Expect = 0.00047, P = 0.00047
Identities = 41/186 (22%), Positives = 90/186 (48%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++G++ + E + + + GP ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 262 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 380
+ + G + YGFVHF + +A +A++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 381 GSNSQK 386
G+ +++
Sbjct: 184 GARAKE 189
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 208 (78.3 bits), Expect = 8.3e-14, P = 8.3e-14
Identities = 67/270 (24%), Positives = 129/270 (47%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KGK ++ +Q L +GN+ +N + KA+ T G ++S ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N ++G+ F+ + AE + +KM+ L+D V R AE A
Sbjct: 131 VCDE---NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELGA 185
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN +D+ +RLK+LF G V + + G+ + +GFV F A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
KA+ E++G+ + A+ + +++T
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 145 (56.1 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 33/94 (35%), Positives = 51/94 (54%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ D D+ L+ G V++M +SG++KG+ F
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V+F E A +A++E+N EL GK+I AQ K
Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 120 (47.3 bits), Expect = 0.00048, P = 0.00048
Identities = 41/186 (22%), Positives = 90/186 (48%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++G++ + E + + + GP ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 262 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPVRIMWSQ-RDP-SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 380
+ + G + YGFVHF + +A +A++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 381 GSNSQK 386
G+ +++
Sbjct: 184 GARAKE 189
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 207 (77.9 bits), Expect = 8.7e-14, P = 8.7e-14
Identities = 65/275 (23%), Positives = 130/275 (47%)
Query: 102 KDDEKKKH--AELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGE 159
+DD+K+ +E ++ + +Y+G + S+ L IG V+ +R+ + +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 160 AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDD 215
+ GYA+V F E +AIE+LN +KG+ + +Q L GN+ +N D
Sbjct: 78 SLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDI 137
Query: 216 MRKAVT---KIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 272
KA+ + ++S ++ D +N +++GF F+ + A+ + ++ +
Sbjct: 138 DNKALYDTFSVFGDILSSKIATD-ENG-KSKGFGFVHFEEEGAAKEAIDALNGMLLNGQE 195
Query: 273 N--APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 330
AP +S + + + LYVKN+ + T ++ +ELFA G I +
Sbjct: 196 IYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD 255
Query: 331 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
G+ + +GFV++ + A+KA++ E++G+ L
Sbjct: 256 GKLKG-FGFVNYEKHEDAVKAVEALNDSELNGEKL 289
Score = 132 (51.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 45/184 (24%), Positives = 84/184 (45%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++ N+ ++ ++ K GP ++S L KD + +GF F+ Y H A + +
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGP-IVSASLEKDADG--KLKGFGFVNYEKHEDAVKAVE 277
Query: 262 KMSNPKFKLDDNAPTVSWADPRNA--------------ESSAASQVKALYVKNLPKDITQ 307
+++ + L+ V A +N E A Q L+VKNL +
Sbjct: 278 ALNDSE--LNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDD 335
Query: 308 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367
++L+E FA +G IT + + G+ + +GFV F+ A KA+ + + G+ L
Sbjct: 336 EKLEEEFAPYGTITSAKVMRTENGKSKG-FGFVCFSTPEEATKAITEKNQQIVAGKPLYV 394
Query: 368 SLAK 371
++A+
Sbjct: 395 AIAQ 398
Score = 125 (49.1 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 27/95 (28%), Positives = 48/95 (50%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ ++L H + +Y+ I + +D+ + G + + K D G+ KG+ F
Sbjct: 205 KERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGF 263
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
V + E A +A+E LN EL G+K+ AQ K+
Sbjct: 264 VNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKN 298
Score = 38 (18.4 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 236 PQNANQNRGFAFIEYYNHACAEYSRQKMS 264
P+NAN N F + + A E +K+S
Sbjct: 491 PRNANDNNQF-YQQKQRQALGEQLYKKVS 518
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 209 (78.6 bits), Expect = 9.5e-14, Sum P(2) = 9.5e-14
Identities = 68/262 (25%), Positives = 125/262 (47%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P+ + D+L+ + + E+R++ KD G++KG A++ F+T+ A + +EE E+
Sbjct: 327 LPYKVTQDELKEVFE---DAVEIRLVS-KD-GKSKGIAYIEFKTEADAEKTLEEKQGTEI 381
Query: 187 K--GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL---------VKD 235
G+K HR G W + ++ + L +K
Sbjct: 382 DYTGEK----GQSQDHR---GGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATHIKV 434
Query: 236 PQNAN-QNRGFAFIEYYNHACAEYSRQKMSN-PKFKLDDNAPTVSWADPRNAESSAASQV 293
PQN N +++G+AFIE+ A E +++ +++ K +++ A + PR + ++ +
Sbjct: 435 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 491
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+VK L +D T++ LKE F G I ++ + G + +GFV F A A +
Sbjct: 492 KTLFVKGLSEDTTEETLKESF--DGSIRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKE 548
Query: 354 NTEKYEIDGQVLDCSLAKPQAD 375
E EIDG + AKP+ +
Sbjct: 549 AMEDGEIDGNKVTLDWAKPKGE 570
Score = 139 (54.0 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 37/170 (21%), Positives = 89/170 (52%)
Query: 124 LGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS 183
L + + A+++ L+ + + T +++ + ++ G++KGYAF+ F + E A +A+ N
Sbjct: 410 LSNLSYSATEETLQEVFE---KATHIKVPQNQN-GKSKGYAFIEFASFEDAKEALNSCNK 465
Query: 184 CELKGKKIKC----------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
E++G+ I+ + +Q LF+ + + E+ ++++ G I +V
Sbjct: 466 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD----GSIRARIV 521
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 283
D + + ++GF F+++ + A+ +++ M + + +D N T+ WA P+
Sbjct: 522 TDRETGS-SKGFGFVDFNSEEDAKAAKEAMEDGE--IDGNKVTLDWAKPK 568
Score = 129 (50.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 55/224 (24%), Positives = 96/224 (42%)
Query: 169 RTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
R KE+A Q E K +K++ + LF+GN+ N +++ ++ +
Sbjct: 207 RKKEMAKQKAAP----EAKKQKVEGTEPTTSFNLFVGNLNFNKSAPELKTGISDL---FA 259
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
+L +R F ++++ + AE + + K+ N + P+ +S
Sbjct: 260 KNDLAVVDVRIGVSRKFGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGKDSK 314
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
+ L KNLP +TQD LKE+F +I V +K G+ + ++ F + A
Sbjct: 315 KDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLV----SKDGKSKG-IAYIEFKTEADA 369
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT 392
K L+ EK G +D + K Q+ Q GG NS S + T
Sbjct: 370 EKTLE--EK---QGTEIDYTGEKGQS-QDHRGGKNSTWSGESKT 407
Score = 122 (48.0 bits), Expect = 0.00028, P = 0.00028
Identities = 54/234 (23%), Positives = 94/234 (40%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFC 140
D D D DEE + E D+DD +++ E++ P G + +P A
Sbjct: 133 DEDDEDDDDDDDEEEEEEEEDEDDSEEEPMEIV--PAKGKKAPAKAVPVKA--------- 181
Query: 141 KSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
KS E + D E + R KE+A Q E K +K++ +
Sbjct: 182 KSTAEDEDEEDDDDDDEEEEEAPGK---RKKEMAKQKAAP----EAKKQKVEGTEPTTSF 234
Query: 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 260
LF+GN+ N +++ ++ + +L +R F ++++ + AE
Sbjct: 235 NLFVGNLNFNKSAPELKTGISDL---FAKNDLAVVDVRIGVSRKFGYVDFES---AEDLE 288
Query: 261 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELF 314
+ + K+ N + P+ +S + L KNLP +TQD LKE+F
Sbjct: 289 KALELTGLKVFGNE--IKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVF 340
Score = 40 (19.1 bits), Expect = 9.5e-14, Sum P(2) = 9.5e-14
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDE---KKKHAELLALPPHGSEVYLGGIPHDASDDD 135
+G +A+K +E+ +E + DDE +K A A P E D DDD
Sbjct: 91 NGKNARKEDSDEEDEDDSEEEDDDEPAVRKAAAAFGAAPATDDE-------DDEDDDD 141
>UNIPROTKB|D6REZ6 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 HOGENOM:HOG000112240 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965724
ProteinModelPortal:D6REZ6 SMR:D6REZ6 Ensembl:ENST00000513473
ArrayExpress:D6REZ6 Bgee:D6REZ6 Uniprot:D6REZ6
Length = 193
Score = 184 (69.8 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 38/116 (32%), Positives = 69/116 (59%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISI 230
+A+ ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDV 181
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 207 (77.9 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 67/270 (24%), Positives = 128/270 (47%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KGK ++ +Q L +GN+ +N + KA+ T G ++S ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N ++G+ F+ + AE + KM+ L+D V R AE A
Sbjct: 131 VCDE---NGSKGYGFVHFETQEAAERAIDKMNG--MLLNDRKVFVGRFKSRKEREAELGA 185
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN +D+ +RLKE F +G V + G+ R +GFV F A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRG-FGFVSFERHEDA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
KA+ + +++G+ + A+ + +++T
Sbjct: 245 QKAVDDMNGKDLNGKAIFVGRAQKKVERQT 274
Score = 133 (51.9 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 30/94 (31%), Positives = 50/94 (53%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ D D+ L+ + G V++M D G+++G+ F
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V+F E A +A++++N +L GK I AQ K
Sbjct: 236 VSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKK 269
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 206 (77.6 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 64/270 (23%), Positives = 130/270 (48%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KG+ ++ +Q L +GN+ +N + KA+ T G ++S ++
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N ++G+ F+ + H AE + +KM+ L+D V R AE A
Sbjct: 131 VCDE---NGSKGYGFVHFETHEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAEMGA 185
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN +D+ ++LKE+F +G + + G+ + +GFV F A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKG-FGFVSFERHEDA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
+A+ E++G+ + A+ + +++T
Sbjct: 245 QRAVDEMNGKEMNGKQVYVGRAQKKGERQT 274
Score = 153 (58.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRH-FCKSIGEVTEVRIMKGKDSGEAKGYA 164
K++ AE+ A + VY+ D D+ L+ FCK G +R+M DSG++KG+
Sbjct: 177 KEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCK-YGPALSIRVMTD-DSGKSKGFG 234
Query: 165 FVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
FV+F E A +A++E+N E+ GK++ AQ K
Sbjct: 235 FVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKK 269
Score = 121 (47.7 bits), Expect = 0.00036, P = 0.00036
Identities = 41/186 (22%), Positives = 89/186 (47%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++G++ + E + + + GP ++SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRVCRDMMT-RRSLGYAYVNFQQPADAERALD 70
Query: 262 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGRPVRIMWSQ-RDP-SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 380
+ + G + YGFVHF +A +A++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEM 183
Query: 381 GSNSQK 386
G+ +++
Sbjct: 184 GARAKE 189
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 210 (79.0 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 68/274 (24%), Positives = 129/274 (47%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + +Y+G + ++ L IG V +R+ + + + GYA+V + T
Sbjct: 57 PQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGE 116
Query: 176 QAIEELNSCELKGKKIKCSAAQ---AKHRLFIGNV-PRNWGEDDMRKAV--TKIGPG-VI 228
+A+EELN +KG+ + +Q A + GNV +N KA+ T G ++
Sbjct: 117 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 176
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D +N N ++G+ F+ Y A + + ++ L++ V P+ S
Sbjct: 177 SCKVAQD-ENGN-SKGYGFVHYETDEAASQAIKHVNG--MLLNEKKVYVGHHIPKKDRQS 232
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIP-PAKPGQERSRYGFVHFA 343
++KA +YVKN+ ++T D + LF +G +T + + G+ R +GFV+F
Sbjct: 233 KFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRG-FGFVNFT 291
Query: 344 ERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ + E GQ L A+ + +++
Sbjct: 292 SHEDASKAVQELNEKEFHGQNLYVGRAQKKHERE 325
Score = 154 (59.3 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 34/118 (28%), Positives = 64/118 (54%)
Query: 85 AQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKS 142
A KH +G E KV +K + ++ + + + +Y+ I + +DD+ R +
Sbjct: 205 AIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEK 264
Query: 143 IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G+VT + + +++G+++G+ FV F + E AS+A++ELN E G+ + AQ KH
Sbjct: 265 YGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKH 322
Score = 123 (48.4 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 52/188 (27%), Positives = 87/188 (46%)
Query: 187 KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 245
K ++ K +A +++ N+ +D+ R K G V S L +D Q ++RGF
Sbjct: 228 KDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGD-VTSSSLARD-QETGKSRGF 285
Query: 246 AFIEYYNHACAEYSRQKMSNPKFKLDD----NAPTVSWADPRNAES-SAASQVKA----- 295
F+ + +H A + Q+++ +F + A + +S AA Q KA
Sbjct: 286 GFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQG 345
Query: 296 --LYVKNLPKDITQDRLKELFAHHGKIT--KVVIPP-AKPGQE-RSRYGFVHFAERSSAM 349
LY+KNL ++ ++L++LF+ G IT KV+ +PG+E S+ G E S
Sbjct: 346 VNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITEPGEEGESKEG-----EESEKN 400
Query: 350 KALKNTEK 357
K K EK
Sbjct: 401 KENKPEEK 408
Score = 48 (22.0 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 328 AKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
+K G+ + +GFV FA A KA+ + ++ + L +LA+
Sbjct: 427 SKLGKSKG-FGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQ 469
Score = 39 (18.8 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 421 PMVYGRGAAPGGM 433
P+ YG G+ PG M
Sbjct: 507 PVFYGPGSQPGFM 519
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 205 (77.2 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 66/271 (24%), Positives = 130/271 (47%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNVPRNWGEDDM-RKAV----TKIGPGVISIE 231
+N +KG+ I+ +Q L +GN+ ED + KA+ + G ++S +
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS-WADPRNAE---S 287
+V D + RGF F+ + H A+ + M+ L+D V + R E
Sbjct: 130 VVCDDHGS---RGFGFVHFETHEAAQQAITTMNG--MLLNDRKVFVGHFKSRREREVELG 184
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+ A + +YVKNL D+ + L++LF+ GK+ V + G R +GFV+F +
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRG-FGFVNFQKHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A KA+ + E+ G++L A+ + ++++
Sbjct: 244 AQKAVMDMNGKEVSGRLLYVGRAQKRVERQS 274
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 204 (76.9 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 64/272 (23%), Positives = 126/272 (46%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 39 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGER 98
Query: 177 AIEELNSCELKGKKIKCSAAQ---AKHRLFIGNV-PRNWGEDDMRKAV--TKIGPG-VIS 229
A++ELN +KGK + +Q A + GNV +N KA+ T G ++S
Sbjct: 99 ALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 158
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSA 289
++ +D + +G+ F+ Y A + + ++ L+D V + S
Sbjct: 159 CKVAQDEFGVS--KGYGFVHYETAEAANNAIKHVNG--MLLNDKKVFVGHHISKKDRQSK 214
Query: 290 ASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAER 345
++KA +Y+KN+ ++ + ++LF G+IT + G+ R +GFV+F+
Sbjct: 215 FEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRG-FGFVNFSTH 273
Query: 346 SSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
SA A++ E+ Q L A+ + +++
Sbjct: 274 ESAQAAVEEMNDKEVRSQKLYVGRAQKKHERE 305
Score = 153 (58.9 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 36/122 (29%), Positives = 65/122 (53%)
Query: 84 DAQKHYDG----DEEMKVAES-DKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRH 138
+A KH +G D+++ V K D + K E+ A + + +Y+ I + D++ R
Sbjct: 185 NAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA---NFTNIYIKNIDPEVEDEEFRK 241
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
+ GE+T + + + G+++G+ FV F T E A A+EE+N E++ +K+ AQ
Sbjct: 242 LFEKFGEITSATLSRDSE-GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQK 300
Query: 199 KH 200
KH
Sbjct: 301 KH 302
Score = 59 (25.8 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 24/100 (24%), Positives = 43/100 (43%)
Query: 272 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 331
D AP V A P + +A++ + + +++ KE K P KP
Sbjct: 360 DTAP-VETATPESETKESANKENEKAAEGEKEPAAEEKEKE-----EKKEAEQKPEKKPL 413
Query: 332 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
+ +GFV F+ A KA+ + ++G+ L +LA+
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 453
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 202 (76.2 bits), Expect = 3.6e-13, P = 3.6e-13
Identities = 66/269 (24%), Positives = 128/269 (47%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G++ +R+ + + + GYA++ F+ A A++
Sbjct: 11 ASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KG+ I+ +Q L +GN+ +N E KA+ T G ++S ++
Sbjct: 71 TMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N ++G+ F+ + A + + M+ L+D V R AE A
Sbjct: 131 VCDE---NGSKGYGFVHFETQEAANRAIETMNG--MLLNDRKVFVGHFKSRKEREAEMGA 185
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN +DI ++LK +F GK V + + G+ R +GFV+F A
Sbjct: 186 KAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRG-FGFVNFVNHGDA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+A+ E++G+VL A+ + +++
Sbjct: 245 RRAVTEMNGKELNGRVLYVGRAQKRLERQ 273
Score = 121 (47.7 bits), Expect = 0.00035, P = 0.00035
Identities = 57/209 (27%), Positives = 93/209 (44%)
Query: 187 KGKKIKCSAAQAKHRLFIGNVPRNWGED-DMRKA---VTKIGPGVISIELVKDPQNANQN 242
K +K + + AK F +N+GED D K T+ G +S+ ++ D + ++
Sbjct: 174 KSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGK-TLSVCVMTDERG--RS 230
Query: 243 RGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS----QVKA--- 295
RGF F+ + NH A + +M N K +L+ V A R Q+K
Sbjct: 231 RGFGFVNFVNHGDARRAVTEM-NGK-ELNGRVLYVGRAQKRLERQGELKRKFEQIKQERI 288
Query: 296 -------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
LYVKNL I ++L++ FA +G IT + G R +GFV F+ A
Sbjct: 289 QRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVM-TDGGHSRG-FGFVCFSSPEEA 346
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA+ + + L +LA+ + ++K
Sbjct: 347 TKAVTEMNGRIVSTKPLYVALAQRKEERK 375
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 201 (75.8 bits), Expect = 4.0e-13, P = 4.0e-13
Identities = 65/272 (23%), Positives = 130/272 (47%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
P S +Y+G + + S+ L +G V+ +R+ + ++ + YA+V + A +
Sbjct: 7 PISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAER 66
Query: 177 AIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VIS 229
A++ LN+ ++GK + +Q L +GNV +N + KA+ T G ++S
Sbjct: 67 ALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILS 126
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP--RNAES 287
++V D + N ++GF F+ Y A+ + K++ N V + P + E
Sbjct: 127 CKVVTD--DGNSSKGFGFVHYETQESADKAIAKVNGMMI----NGQKV-FVGPFKSSKER 179
Query: 288 SAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAER 345
++VK ++ KNL +D+ D+LKEL +G+IT + I G+ + +GF +F
Sbjct: 180 GQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKG-FGFANFESA 238
Query: 346 SSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+A ++N G+ + A+ + +++
Sbjct: 239 EAAKNVVENENGKIFHGKPIYAGRAQKKIERE 270
Score = 175 (66.7 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 63/265 (23%), Positives = 115/265 (43%)
Query: 126 GIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE 185
GI H A D F G + +++ D +KG+ FV + T+E A +AI ++N
Sbjct: 108 GIDHKALYDTFSAF----GNILSCKVVTD-DGNSSKGFGFVHYETQESADKAIAKVNGMM 162
Query: 186 LKGKKI-----KCSAAQAKH------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+ G+K+ K S + + +F N+ + G D +++ + + G + +I ++
Sbjct: 163 INGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGE-ITNITIMA 221
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP----RNAESSAA 290
D + ++ GFA N AE ++ + N K+ P + R AE
Sbjct: 222 DDKGKSKGFGFA-----NFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHT 276
Query: 291 SQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346
+ K LY+KN+ I D+L+E+F+ G IT ++ +GFV +
Sbjct: 277 FETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPD 336
Query: 347 SAMKALKNTEKYEIDGQVLDCSLAK 371
A +A+ I + L +LA+
Sbjct: 337 EATRAVTEMNGRMIGTKPLYVALAQ 361
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 201 (75.8 bits), Expect = 4.9e-13, P = 4.9e-13
Identities = 65/270 (24%), Positives = 127/270 (47%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KG+ ++ +Q L +GN+ +N + KA+ T G ++S ++
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N ++G+ F+ + AE + KM+ L+D V R AE A
Sbjct: 131 VCDE---NGSKGYGFVHFETQEAAERAIDKMNG--MLLNDRKVFVGRFKSRKEREAELGA 185
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN D+ +RLKE+F +G V + G+ + +GFV F A
Sbjct: 186 RAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKG-FGFVSFERHEDA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
KA+ +++G+ + A+ + +++T
Sbjct: 245 QKAVDEMNGKDMNGKSMFVGRAQKKVERQT 274
Score = 136 (52.9 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 30/94 (31%), Positives = 51/94 (54%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ D +D+ L+ G V++M D+G++KG+ F
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V+F E A +A++E+N ++ GK + AQ K
Sbjct: 236 VSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKK 269
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 201 (75.8 bits), Expect = 5.1e-13, P = 5.1e-13
Identities = 73/310 (23%), Positives = 137/310 (44%)
Query: 84 DAQKHYDGDEEMKVAESDKDDEKKKHAELLALP----PHGSEVYLGGIPHDASDDDLRHF 139
+ Q +E AE + +A +A P P + +Y+G + ++ L
Sbjct: 40 ETQPEKKAEEPEAAAEPSESTSTPTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFEL 99
Query: 140 CKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ-- 197
SIG V +R+ + + + GYA+V F E +A++ELN +KG+ + +Q
Sbjct: 100 FNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRD 159
Query: 198 -AKHRLFIGNV-PRNWGEDDMRKAV--TKIGPG-VISIELVKDPQNANQNRGFAFIEYYN 252
+ ++ GNV +N KA+ T G ++S ++ D +G+ F+ + +
Sbjct: 160 PSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD--ELGNAKGYGFVHFDS 217
Query: 253 HACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKA----LYVKNLPKDITQD 308
A + + ++ L+D V R S +KA +Y+KNL +IT+
Sbjct: 218 VESANAAIEHVNG--MLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQ 275
Query: 309 RLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367
+LF G+IT + + K ++ R +GFV++A A KA+ E G+ L
Sbjct: 276 EFSDLFGQFGEITSLSL--VKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYV 333
Query: 368 SLAKPQADQK 377
A+ + +++
Sbjct: 334 GRAQKKHERE 343
Score = 184 (69.8 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 87/354 (24%), Positives = 148/354 (41%)
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI---------- 191
+ G++ ++ + G AKGY FV F + E A+ AIE +N L KK+
Sbjct: 190 AFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRE 248
Query: 192 ---KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAF 247
K A +A ++I N+ E + + G + S+ LVKD QN ++ RGF F
Sbjct: 249 RQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGE-ITSLSLVKD-QN-DKPRGFGF 305
Query: 248 IEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA----SQVKA-------- 295
+ Y NH CA+ + ++++ ++K V A ++ Q+K
Sbjct: 306 VNYANHECAQKAVDELNDKEYK--GKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQG 363
Query: 296 --LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
L++KNL ++ +RLK F+ G IT I + G+ + +GFV + A KA+
Sbjct: 364 VNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKG-FGFVCYTTPEEANKAVT 422
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHXXXXXXXXXXXXXXXXX 413
+ + G+ L +LA+ + +++ +Q A N
Sbjct: 423 EMNQRMLAGKPLYVALAQRKEVRRSQ--LEAQIQARNQFRLQQQVAAAAGIPAVQYGATG 480
Query: 414 XXXXFAQPMVYGRGAAPGGMAM----LPMLLPDGRIGYVLQQPGVQQHNPPPQP 463
P++YG G P A+ +PM+ P G G + PG+ P P
Sbjct: 481 -------PLIYGPGGYPIPAAVNGRGMPMV-P-GHNGPMPMYPGMPTQFPAGGP 525
Score = 124 (48.7 bits), Expect = 0.00018, P = 0.00018
Identities = 32/118 (27%), Positives = 61/118 (51%)
Query: 86 QKHYDGDEEMKVAESDKDDEKKKHAELLALPP----HGSEVYLGGIPHDASDDDLRHFCK 141
+K Y G + K ++++E +K E + L G +++ + + D+ L+
Sbjct: 329 KKLYVGRAQKK---HEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFS 385
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
+ G +T +IM + G++KG+ FV + T E A++A+ E+N L GK + + AQ K
Sbjct: 386 AFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRK 442
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 146 (56.5 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
Identities = 47/200 (23%), Positives = 95/200 (47%)
Query: 113 LALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE 172
L L + V++ +P++ +D+DL + G+V ++M G + GY FV F + +
Sbjct: 102 LELERDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDP-KGNSYGYGFVRFSSPQ 160
Query: 173 LASQAIEELNSCELKGKKIKCSAAQ------AKH---RLFIGNVPRNWGEDDMRKAVTKI 223
++ AIEEL+ + + KK+ C + +K+ LFI +P + +D +RK
Sbjct: 161 ESAAAIEELDGYQYQNKKLLCRLSNLYTNLNSKYPSNNLFIKPLPYDVTDDQLRKLFEPF 220
Query: 224 GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP-TVSWADP 282
G +I +++ D N Q++ F+ + + A + M+ + D P V +AD
Sbjct: 221 GK-IIECKVMLD-HNG-QSKFAGFVRFSSELDASKAIDAMNGVRINKDSGYPLVVKYADT 277
Query: 283 RNAESSAASQ-VKALYVKNL 301
+ S + ++ +Y + +
Sbjct: 278 EQQKISRKQRKMQTIYQEKI 297
Score = 126 (49.4 bits), Expect = 0.00016, P = 0.00016
Identities = 37/171 (21%), Positives = 83/171 (48%)
Query: 182 NSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQ 241
N+ + K+++ Q +F+ ++P + ++D+ +K G V+S +++ DP+
Sbjct: 93 NNNSVNNKELELERDQTN--VFVKHLPYEFNDEDLENLFSKYGK-VLSSKVMIDPKG--N 147
Query: 242 NRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNL 301
+ G+ F+ + + + + +++ +++ N + ++ L++K L
Sbjct: 148 SYGYGFVRFSSPQESAAAIEELDGYQYQ---NKKLLCRLSNLYTNLNSKYPSNNLFIKPL 204
Query: 302 PKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
P D+T D+L++LF GKI + + GQ + GFV F+ A KA+
Sbjct: 205 PYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFA-GFVRFSSELDASKAI 254
Score = 106 (42.4 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
Identities = 29/95 (30%), Positives = 43/95 (45%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
L+V +LP + L +LF+ GK+ V + K E YGFV F + A+K K
Sbjct: 771 LFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKEM 830
Query: 356 EKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALN 390
+ I + L L K + + SG S+ Q N
Sbjct: 831 NGFRIGSKFLKVKL-KNEKESMNSGKSHHQHQNQN 864
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 200 (75.5 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 67/270 (24%), Positives = 130/270 (48%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + S + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KG+ ++ +Q L +GNV +N + KA+ T G ++S ++
Sbjct: 71 TMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N +RG F+ + A + Q M+ L+D V R AE A
Sbjct: 131 VCDE---NGSRGHGFVHFETQEAATRAIQTMNG--MLLNDRKVFVGHFKSRKEREAEFGA 185
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN D+ +RL+E+F+ GK V + G+ + +GFV+F + A
Sbjct: 186 RAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKG-FGFVNFEKHEEA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
KA+ + EI+G+++ A+ + ++++
Sbjct: 245 QKAVADMNGKEINGRMVYVGRAQKRLERQS 274
Score = 122 (48.0 bits), Expect = 0.00028, P = 0.00028
Identities = 29/106 (27%), Positives = 49/106 (46%)
Query: 94 EMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMK 153
+ KV K++ AE A + VY+ D D+ LR G+ V++M
Sbjct: 165 DRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMM 224
Query: 154 GKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
+G +KG+ FV F E A +A+ ++N E+ G+ + AQ +
Sbjct: 225 DH-TGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKR 269
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 198 (74.8 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 67/269 (24%), Positives = 129/269 (47%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KGK I+ +Q L +GNV +N + KA+ T G ++S ++
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N ++G+AF+ + A + +KM+ L+D V R AE A
Sbjct: 131 VCDE---NGSKGYAFVHFETQEAANKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELGA 185
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN +++ + L+ELF+ GK V + G+ + +GFV + + A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKG-FGFVSYEKHEDA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA++ E+ G+ + A+ + +++
Sbjct: 245 NKAVEEMNGKEMSGKSIFVGRAQKKVERQ 273
Score = 148 (57.2 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 32/94 (34%), Positives = 53/94 (56%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D++LR G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKK 269
Score = 127 (49.8 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 50/207 (24%), Positives = 98/207 (47%)
Query: 187 KGKKIKCSAAQAKHRLFIGNVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQN 242
K +K + + AK + F +N+GE DD +R+ ++ G +S+++++D + ++
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGK-TLSVKVMRDC--SGKS 230
Query: 243 RGFAFIEYYNH-----ACAEYSRQKMSNPKF-------KLDDNAPTVSWADPRNAESSAA 290
+GF F+ Y H A E + ++MS K++ A + E +
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
Q LY+KNL I ++L++ F+ G IT + + G+ + +GFV F+ A K
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKG-FGFVCFSSPEEATK 348
Query: 351 ALKNTEKYEIDGQVLDCSLAKPQADQK 377
A+ + + L +LA+ + ++K
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 117 (46.2 bits), Expect = 0.00099, P = 0.00098
Identities = 42/186 (22%), Positives = 89/186 (47%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFQQPADAERALD 70
Query: 262 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
M+ F + P + W+ R+ S S V +++KNL K I L + F+ G I
Sbjct: 71 TMN---FDVIKGKPIRIMWSQ-RDP-SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 380
+ + G + Y FVHF + +A KA++ ++ + + K + +++
Sbjct: 126 LSCKVVCDENGSKG--YAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Query: 381 GSNSQK 386
G+ +++
Sbjct: 184 GAKAKE 189
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 198 (74.8 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 67/269 (24%), Positives = 129/269 (47%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KGK I+ +Q L +GNV +N + KA+ T G ++S ++
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA 289
V D N ++G+AF+ + A + +KM+ L+D V R AE A
Sbjct: 131 VCDE---NGSKGYAFVHFETQEAANKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELGA 185
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A + +Y+KN +++ + L+ELF+ GK V + G+ + +GFV + + A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKG-FGFVSYEKHEDA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA++ E+ G+ + A+ + +++
Sbjct: 245 NKAVEEMNGKEMSGKSIFVGRAQKKVERQ 273
Score = 148 (57.2 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 32/94 (34%), Positives = 53/94 (56%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D++LR G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKK 269
Score = 127 (49.8 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 50/207 (24%), Positives = 98/207 (47%)
Query: 187 KGKKIKCSAAQAKHRLFIGNVPRNWGE--DD--MRKAVTKIGPGVISIELVKDPQNANQN 242
K +K + + AK + F +N+GE DD +R+ ++ G +S+++++D + ++
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGK-TLSVKVMRDC--SGKS 230
Query: 243 RGFAFIEYYNH-----ACAEYSRQKMSNPKF-------KLDDNAPTVSWADPRNAESSAA 290
+GF F+ Y H A E + ++MS K++ A + E +
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
Q LY+KNL I ++L++ F+ G IT + + G+ + +GFV F+ A K
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM-LEDGRSKG-FGFVCFSSPEEATK 348
Query: 351 ALKNTEKYEIDGQVLDCSLAKPQADQK 377
A+ + + L +LA+ + ++K
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEERK 375
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 200 (75.5 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 70/299 (23%), Positives = 125/299 (41%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
K + E KK + L ++ +P+ + DDLR + ++R+ G
Sbjct: 363 KARSKENSQENKKERDARTL-------FVKNLPYSITQDDLREI---FDQAVDIRVPMG- 411
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-------KC-----SAAQAKHRLF 203
++G ++G A++ F+T+ +A +A+EE +++G+ I K A A L
Sbjct: 412 NTGTSRGIAYIEFKTEAIAEKALEEAQGSDVQGRSIIVDFTGDKSRQGGRGAPSASKVLV 471
Query: 204 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 263
+ N+ + ED ++ K +SI + PQN + +G+AF+E+ N ++ + +
Sbjct: 472 VNNLAFSASEDSLQSVFEK----AVSIRI---PQNNGRPKGYAFVEFENVEDSKEALENC 524
Query: 264 SNPKFKLDDNAPTVSWADPRNAESSAASQ--VKALYVKNLPKDITQDRLKELFAHHGKIT 321
+N + S D + K L+VK L D T LK+ F G I
Sbjct: 525 NNTDIEGRSIRLEYSQNDRERGGGGRGNSGPTKTLFVKGLSDDTTDQTLKDSF--DGAIA 582
Query: 322 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 380
+ G + +GFV F A + + EIDG + AKP+ + G
Sbjct: 583 ARIATDRDTGSSKG-FGFVDFDNEQDCKAAKEAMDDGEIDGNKVTLDYAKPKGEGGRGG 640
Score = 180 (68.4 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 77/323 (23%), Positives = 139/323 (43%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKH-----AELLALPPHGSEVYLGGIPHDASDDD 135
D D + + +EE + + E KK A+ G ++LG + ++ D+
Sbjct: 246 DDDDEEDDDEEEEETPATPAKRKAETKKEKGTPPAKKAKTDGEGFSLFLGNLNNNKDFDE 305
Query: 136 LRH-----FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKK 190
L+ F K E+ +VR+ G K + +V F ++E +A+E LN +L G+
Sbjct: 306 LKSAISKFFSKEGLEIQDVRL------GGTKKFGYVDFASEEELQKALE-LNGKKLLGQP 358
Query: 191 IKCSAAQAKHR------------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
+K A++K LF+ N+P + +DD+R+ + ++++ N
Sbjct: 359 VKLDKARSKENSQENKKERDARTLFVKNLPYSITQDDLREIFDQ------AVDIRVPMGN 412
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYV 298
+RG A+IE+ A AE + ++ + + R A S K L V
Sbjct: 413 TGTSRGIAYIEFKTEAIAEKALEEAQGSDVQGRSIIVDFTGDKSRQGGRGAPSASKVLVV 472
Query: 299 KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY 358
NL ++D L+ +F K + IP G+ + Y FV F + +AL+N
Sbjct: 473 NNLAFSASEDSLQSVFE---KAVSIRIPQNN-GRPKG-YAFVEFENVEDSKEALENCNNT 527
Query: 359 EIDGQVLDCSLAKPQADQKTSGG 381
+I+G+ + L Q D++ GG
Sbjct: 528 DIEGRSI--RLEYSQNDRERGGG 548
Score = 130 (50.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 42/189 (22%), Positives = 86/189 (45%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHA----CAE 257
LF+GN+ N D+++ A++K +E ++D + + F ++++ + E
Sbjct: 292 LFLGNLNNNKDFDELKSAISKFFSKE-GLE-IQDVRLGGTKK-FGYVDFASEEELQKALE 348
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ +K+ KLD + + + E+ + L+VKNLP ITQD L+E+F
Sbjct: 349 LNGKKLLGQPVKLDK-----ARSKENSQENKKERDARTLFVKNLPYSITQDDLREIF--- 400
Query: 318 GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ + +P G R ++ F + A KAL+ + ++ G+ + ++ Q
Sbjct: 401 DQAVDIRVPMGNTGTSRG-IAYIEFKTEAIAEKALEEAQGSDVQGRSIIVDFTGDKSRQG 459
Query: 378 TSGGSNSQK 386
G ++ K
Sbjct: 460 GRGAPSASK 468
Score = 38 (18.4 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 28 ESEERVDLDEDND 40
ESEE D DE++D
Sbjct: 241 ESEEEDDDDEEDD 253
Score = 37 (18.1 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 98 AESDKDDEKKKHAELLALPP 117
+E D DD+ +E A PP
Sbjct: 113 SEEDDDDDDDDESEEEAPPP 132
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 167 (63.8 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 47/159 (29%), Positives = 85/159 (53%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +D++R + IG V S +L++D + A + G+ F+ Y N AE
Sbjct: 32 SKTNLIVNYLPQNMSQDELRSLFSSIGE-VESAKLIRD-KVAGHSLGYGFVNYLNPNDAE 89
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SS + + LY+ LPK +TQ ++E+F +
Sbjct: 90 RAISTLNG--LRLQSKTIKVSYARP----SSDSIKDANLYISGLPKTMTQKDVEEMFGRY 143
Query: 318 GKI--TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
G+I ++V++ A G R F+ F +R+ A A+K+
Sbjct: 144 GRIINSRVLVDQAS-GLSRG-VAFIRFDKRAEAEDAIKD 180
Score = 166 (63.5 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 44/147 (29%), Positives = 75/147 (51%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + S D+LR SIGEV ++++ K +G + GY FV + A +AI LN L
Sbjct: 41 LPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAISTLNGLRL 100
Query: 187 KGKKIKCSAAQAKH------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ L+I +P+ + D+ + + G +I+ ++ D Q +
Sbjct: 101 QSKTIKVSYARPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGR-IINSRVLVD-QASG 158
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPK 267
+RG AFI + A AE + + ++ K
Sbjct: 159 LSRGVAFIRFDKRAEAEDAIKDLNGQK 185
Score = 63 (27.2 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 16/73 (21%), Positives = 32/73 (43%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
+++ NL +D + L ++F G +T V + + +GFV A A+ +
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 356 EKYEIDGQVLDCS 368
Y + ++L S
Sbjct: 320 NGYRLGDKILQVS 332
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 170 (64.9 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 44/174 (25%), Positives = 86/174 (49%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++GG+ + + LR + GEV + IMK K + +++G+ FV F+ +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 181 L-NSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
++ + + +K S +++F+G +P N GE ++R+ K G V + ++ D +
Sbjct: 71 RPHTLDGRNQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGV-VTEVVMIYDAEK- 128
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFK-LDDNAPTVSWADPRNAESSAASQ 292
+ RGF FI + + E S + N F + V A+PR+++S A Q
Sbjct: 129 QRPRGFGFITFED----EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQ 178
Score = 138 (53.6 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 46/185 (24%), Positives = 93/185 (50%)
Query: 194 SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNH 253
S A +LF+G + + ++ +R ++ G V+ ++KD + NQ+RGF F+++ +
Sbjct: 4 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGE-VVDCVIMKD-KTTNQSRGFGFVKFKDP 61
Query: 254 ACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKEL 313
C S P LD + PR+ ++S ++++ +V +P + + L+E
Sbjct: 62 NCV--GTVLASRPH-TLDGR----NQKGPRS-DNSKSNKI---FVGGIPHNCGETELREY 110
Query: 314 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373
F G +T+VV+ Q +GF+ F + S +A+ N ++I G+ ++ A+P+
Sbjct: 111 FKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPR 169
Query: 374 ADQKT 378
D K+
Sbjct: 170 -DSKS 173
Score = 135 (52.6 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 23/80 (28%), Positives = 49/80 (61%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+++++GGIPH+ + +LR + K G VTEV ++ + +G+ F+TF ++ QA+
Sbjct: 91 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 150
Query: 180 ELNSCELKGKKIKCSAAQAK 199
++ ++ GKK++ A+ +
Sbjct: 151 -MHFHDIMGKKVEVKRAEPR 169
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 192 (72.6 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 63/270 (23%), Positives = 127/270 (47%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + YA++ F+ A +A++
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KG+ I+ +Q L +GNV +N E KA+ T G ++S ++
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS-WADPRNAESSAAS 291
V D + RG+ F+ + H A + Q M+ L+D V + R E +
Sbjct: 131 VCDEHGS---RGYGFVHFETHEAANRAIQTMNG--MLLNDRKVFVGHFKSRRERELEYGA 185
Query: 292 QVKA---LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
+V +Y+KN +D+ RL+E+F+ G V + G+ R +GFV++ A
Sbjct: 186 KVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRG-FGFVNYGNHEEA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
KA+ E++G+++ A+ + ++++
Sbjct: 245 QKAVSEMNGKEVNGRMIYVGRAQKRIERQS 274
Score = 127 (49.8 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 52/187 (27%), Positives = 90/187 (48%)
Query: 209 RNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 264
+N+GED D +R+ + G +S++++ D ++ ++RGF F+ Y NH A+ + +M
Sbjct: 196 KNFGEDMDDKRLREIFSAFG-NTLSVKVMMD--DSGRSRGFGFVNYGNHEEAQKAVSEM- 251
Query: 265 NPKFKLDDNAPTVSWADPRNAESSAAS----QVKA----------LYVKNLPKDITQDRL 310
N K +++ V A R S Q+K LYVKNL I DRL
Sbjct: 252 NGK-EVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 311 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370
++ F +G IT + + G + +GFV F+ A KA+ + + L +LA
Sbjct: 311 RKEFLPYGTITSAKVM-TEGGHSKG-FGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 371 KPQADQK 377
+ + ++K
Sbjct: 369 QRKEERK 375
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 192 (72.6 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 65/282 (23%), Positives = 133/282 (47%)
Query: 113 LALPPHGS----EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTF 168
+ PP+ + +Y+G + D S+ L G V +R+ + S + GYA+V F
Sbjct: 46 IGYPPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNF 105
Query: 169 RTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR-----LFIGNVPRNWGEDDMRKAV 220
+ A +A++ +N + G+ ++ +Q A R +FI N+ R +
Sbjct: 106 QQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTF 165
Query: 221 TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA 280
+ G ++S ++ D + ++G+ F+ + A+ + +K++ L D V
Sbjct: 166 SLFG-NILSCKVATDDEG--NSKGYGFVHFETEHSAQTAIEKVNG--MLLSDKKVYVGKF 220
Query: 281 DPR--NAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 336
PR + S +K ++VKN + + Q++L +F+ G+IT V+ G+ +
Sbjct: 221 QPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKG- 279
Query: 337 YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
+GFV FA++ +A +A++ ++G DC L+ +A +K+
Sbjct: 280 FGFVAFADQDAAGQAVEKLNDSILEGT--DCKLSVCRAQKKS 319
Score = 126 (49.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 32/105 (30%), Positives = 53/105 (50%)
Query: 99 ESDKDDEKKKHAELLALPP----HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG 154
+S++ E K+ E L G +Y+ I D +DD LR S G +T ++M
Sbjct: 318 KSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVD 377
Query: 155 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
++G +KG+ FV F E A+ A+ ++NS + K + + AQ K
Sbjct: 378 -ENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRK 421
Score = 124 (48.7 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 43/194 (22%), Positives = 87/194 (44%)
Query: 194 SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNH 253
+A + L+IG++ + E + + + GP V+SI + +D + + G+A++ +
Sbjct: 51 NATYSMASLYIGDLHPDVSEAMLFEKFSMAGP-VLSIRVCRD-NTSRLSLGYAYVNFQQP 108
Query: 254 ACAEYSRQKMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKE 312
A AE + M+ F++ P + W+ R+ + A +++KNL + I + +
Sbjct: 109 ADAERALDTMN---FEVIHGRPMRIMWSQ-RDPAARRAGNGN-IFIKNLDRVIDNKSVYD 163
Query: 313 LFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372
F+ G I + G + YGFVHF SA A++ + + + +P
Sbjct: 164 TFSLFGNILSCKVATDDEGNSKG-YGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQP 222
Query: 373 QADQKTSGGSNSQK 386
+A + G + K
Sbjct: 223 RAQRMKELGESGLK 236
Score = 42 (19.8 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 427 GAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQP 463
G G+ + L G+ GY + P Q P QP
Sbjct: 442 GQQASGVPAMTQLYQPGQQGYFVPNPMNAQGRPGFQP 478
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 180 (68.4 bits), Expect = 6.9e-11, P = 6.9e-11
Identities = 49/180 (27%), Positives = 94/180 (52%)
Query: 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 260
+LF+G +P+++ E++++ T I + S+ L+K+ + N+ +G AF+ + A+ +
Sbjct: 4 KLFVGQIPKSFNEEEIKNLFTNIA-NIESVSLIKN-KTTNEPQGCAFVSVPSREEADRAI 61
Query: 261 QKMSNPK-FKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 319
+++ N K F+ N V +AD + + AS+ L+V LP+ +++++ELF HG
Sbjct: 62 EQLHNSKKFQGVLNNLQVKYAD--SEQEKLASK---LFVGMLPRSYEEEQIRELFEPHGV 116
Query: 320 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV--LDCSLAKPQADQK 377
+ + I P E GF+ F R SA+ A+ ++DG L A + D+K
Sbjct: 117 VEDICILRG-PNSESKGCGFIKFDNRESALSAIATLNGMKLDGSPNPLVVKFADTEKDKK 175
Score = 161 (61.7 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 46/181 (25%), Positives = 96/181 (53%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+++++G IP +++++++ +I + V ++K K + E +G AFV+ ++E A +AIE
Sbjct: 3 TKLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIE 62
Query: 180 EL-NSCELKGK----KIK-CSAAQAK--HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+L NS + +G ++K + Q K +LF+G +PR++ E+ +R+ G V I
Sbjct: 63 QLHNSKKFQGVLNNLQVKYADSEQEKLASKLFVGMLPRSYEEEQIRELFEPHGV-VEDIC 121
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+++ P + +++G FI++ N A + ++ K N V +AD +
Sbjct: 122 ILRGPNS--ESKGCGFIKFDNRESALSAIATLNGMKLDGSPNPLVVKFADTEKDKKKKQK 179
Query: 292 Q 292
Q
Sbjct: 180 Q 180
Score = 124 (48.7 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
P GS +++ IP+ SD+DL + G V ++ K++G +KG+ FV++ A+
Sbjct: 400 PQGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANL 459
Query: 177 AIEELNSCELKGKKIKCSAAQ 197
AI L+ + GKK+K S Q
Sbjct: 460 AISNLHGQMMAGKKLKVSLKQ 480
Score = 71 (30.1 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 22/82 (26%), Positives = 35/82 (42%)
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
S Q L+V N+P + + L LF +G + + K +GFV + +S
Sbjct: 397 SVGPQGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPAS 456
Query: 348 AMKALKNTEKYEIDGQVLDCSL 369
A A+ N + G+ L SL
Sbjct: 457 ANLAISNLHGQMMAGKKLKVSL 478
Score = 37 (18.1 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 6/21 (28%), Positives = 15/21 (71%)
Query: 95 MKVAESDKDDEKKKHAELLAL 115
+K A+++KD +KK+ + + +
Sbjct: 165 VKFADTEKDKKKKQKQQQIQI 185
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 190 (71.9 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
Identities = 59/256 (23%), Positives = 118/256 (46%)
Query: 132 SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191
++D+L+ + + E+R++ G +KG A++ F+++ A + +EE E+ G+ +
Sbjct: 409 TEDELKEVFE---DAVEIRLVS--QDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 463
Query: 192 KCSAAQAK-HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL---------VKDPQNAN- 240
K R W + ++ + L +K PQN +
Sbjct: 464 SLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHG 523
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSN-PKFKLDDNAPTVSWADPRNAESSAASQVKALYVK 299
+++G+AFIE+ A E +++ +++ K +++ + PR + ++ + K L+VK
Sbjct: 524 KSKGYAFIEF---ASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVK 580
Query: 300 NLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359
L +D T++ LKE F G + ++ + G + +GFV F A A + E E
Sbjct: 581 GLSEDTTEETLKESF--EGSVRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGE 637
Query: 360 IDGQVLDCSLAKPQAD 375
IDG + AKP+ +
Sbjct: 638 IDGNKVTLDWAKPKGE 653
Score = 149 (57.5 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 66/300 (22%), Positives = 134/300 (44%)
Query: 91 GDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVR 150
G + ++ + + E KK + P +++G + + S +L+ +I E+
Sbjct: 282 GKRKKEMTKQKEAPEAKKQKIEGSEPTTPFNLFIGNLNPNKSVAELK---VAISELFAKN 338
Query: 151 IMKGKD--SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA--------AQAKH 200
+ D +G + + +V F + E +A+E L ++ G +IK +A
Sbjct: 339 DLAAVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAAR 397
Query: 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 260
L N+ N ED++++ + + I LV +++G A+IE+ + A AE +
Sbjct: 398 TLLAKNLSFNITEDELKE----VFEDAVEIRLVSQD---GRSKGIAYIEFKSEADAEKNL 450
Query: 261 QKMSNPKFKLDDNAPTVSWA------DPRNAESSAAS-QVKALYVKNLPKDITQDRLKEL 313
++ + +D + ++ + R ++S S + K L + NL T++ L+E+
Sbjct: 451 EEKQGAE--IDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEV 508
Query: 314 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373
F K T + +P G+ + Y F+ FA A +AL + K EI+G+ + L P+
Sbjct: 509 FE---KATFIKVPQNPHGKSKG-YAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPR 564
Score = 140 (54.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 66/316 (20%), Positives = 129/316 (40%)
Query: 84 DAQKHYDGDEEMKVAESDKDDEKKKHAELLALPP-HGSEVYLGGIPHDAS------DDDL 136
D + D DE+ + ++++E E++ + P G + +P A +DD
Sbjct: 189 DEDEEDDDDEDDDDDDEEEEEEDDSEEEVMEITPAKGKKTPAKVVPVKAKSVAEEEEDDE 248
Query: 137 RHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196
+ E E +D E + V + + ++ + E K +KI+ S
Sbjct: 249 DDEDEEEDEDEEDE-EDDEDEDEEEEEEPVKAAPGKRKKEMTKQKEAPEAKKQKIEGSEP 307
Query: 197 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 256
LFIGN+ N +++ A++++ +L NR F ++++ + A
Sbjct: 308 TTPFNLFIGNLNPNKSVAELKVAISEL---FAKNDLAAVDVRTGTNRKFGYVDFES---A 361
Query: 257 EYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAH 316
E + + K+ N + P+ +S + L KNL +IT+D LKE+F
Sbjct: 362 EDLEKALELTGLKVFGNE--IKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFED 419
Query: 317 HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
+I V ++ G+ + ++ F + A K L+ + EIDG+ + + +
Sbjct: 420 AVEIRLV----SQDGRSKG-IAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQR 474
Query: 377 KTSGGSNSQKSALNPT 392
+ G NS S + T
Sbjct: 475 QERTGKNSTWSGESKT 490
Score = 134 (52.2 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 42/213 (19%), Positives = 101/213 (47%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFC 140
DG +Y G++ + + K+ ++ L L + + A+++ L+
Sbjct: 459 DGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVL---------SNLSYSATEETLQEVF 509
Query: 141 KSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC------- 193
+ + T +++ + G++KGYAF+ F + E A +A+ N E++G+ I+
Sbjct: 510 E---KATFIKVPQNPH-GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRG 565
Query: 194 ---SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
+ +Q LF+ + + E+ ++++ G + +V D + + ++GF F+++
Sbjct: 566 SPNARSQPSKTLFVKGLSEDTTEETLKESFE----GSVRARIVTDRETGS-SKGFGFVDF 620
Query: 251 YNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 283
+ A+ +++ M + + +D N T+ WA P+
Sbjct: 621 NSEEDAKAAKEAMEDGE--IDGNKVTLDWAKPK 651
Score = 44 (20.5 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKK 108
D D + D DEE + + D+D+E+++
Sbjct: 247 DEDDEDEEEDEDEEDEEDDEDEDEEEEE 274
Score = 39 (18.8 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKHAE 111
+G +A+K ++E + E D D+++ + E
Sbjct: 136 NGKNAKKEDSDEDEDEEDEDDSDEDEDEEDE 166
Score = 37 (18.1 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 22 EREKPIESEERVDLDEDND 40
E E+ E EE + DED D
Sbjct: 251 EDEEEDEDEEDEEDDEDED 269
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 188 (71.2 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 66/265 (24%), Positives = 125/265 (47%)
Query: 107 KKHAELLALPPHGSE---VYLGGIPHDASDDDL-RHFCKSIGEVTEVRIMKGKDSGEAKG 162
K + L H S +Y+G + D ++ DL F ++ V V + + +G++
Sbjct: 5 KTETQALGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNV-PVVSVHLCRNSVTGKSMC 63
Query: 163 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AKHR--------LFIGNVPRNW 211
YA++ F + AS A+ LN +LKGK ++ +Q A R L++ N+ +
Sbjct: 64 YAYINFDSPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSI 123
Query: 212 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 271
+ + G ++S ++V++ N Q++GF F+++ A +R +
Sbjct: 124 TSSCLERMFCPFG-SILSCKVVEE--NG-QSKGFGFVQFDTEQSAVSARSALHG-SMVYG 178
Query: 272 DNAPTVSWADPRNAESSAASQVKA-LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 330
+ + + A +Q +YVKNL + +T D L LF+ +G ++ VV+ +
Sbjct: 179 KKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVV--MRD 236
Query: 331 GQERSR-YGFVHFAERSSAMKALKN 354
G RSR +GFV+F +A KA+++
Sbjct: 237 GMGRSRGFGFVNFCNPENAKKAMES 261
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 156 (60.0 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 49/193 (25%), Positives = 89/193 (46%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + + + +P S D++R S GEV ++++ K +G++ GY FV + +E A
Sbjct: 106 PDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAE 165
Query: 176 QAIEELNSCELKGKKIKCSAAQAKHR------LFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
+AI LN L+ K IK S A+ L++ +P+N + D+ + G + S
Sbjct: 166 KAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITS 225
Query: 230 IEL---VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE 286
L + A ++G FI + A+ + ++++ K TV +A+ N
Sbjct: 226 RILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFAN--NPS 283
Query: 287 SSAAS-QVKALYV 298
S+ S Q A Y+
Sbjct: 284 SNKNSMQPLAAYI 296
Score = 150 (57.9 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 53/198 (26%), Positives = 94/198 (47%)
Query: 199 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEY 258
K L + +P+ +D++R G V S +L++D + Q+ G+ F+ Y AE
Sbjct: 109 KTNLIVNYLPQTMSQDEIRSLFVSFGE-VESCKLIRD-KVTGQSLGYGFVNYVKQEDAEK 166
Query: 259 SRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 318
+ ++ +L + VS A P + A+ LYV LPK++TQ L+ LF+ +G
Sbjct: 167 AINALNG--LRLQNKTIKVSIARPSSESIKGAN----LYVSGLPKNMTQSDLESLFSPYG 220
Query: 319 KI-TKVVIPPAKPGQERSRY----GFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373
KI T ++ G+ + GF+ F +R A +A+K E++G S +P
Sbjct: 221 KIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIK-----ELNGTTPKNS-TEP- 273
Query: 374 ADQKTSGGSNSQKSALNP 391
K + +S K+++ P
Sbjct: 274 ITVKFANNPSSNKNSMQP 291
Score = 74 (31.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 22/92 (23%), Positives = 42/92 (45%)
Query: 287 SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346
++ AS ++V NL D ++ L +LF G + V + + +GFV
Sbjct: 354 NTIASSGWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYE 413
Query: 347 SAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A+ A+++ Y + +VL S K +++T
Sbjct: 414 EAVLAIQSLNGYTLGNRVLQVSF-KTNKNKQT 444
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 188 (71.2 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 59/254 (23%), Positives = 117/254 (46%)
Query: 132 SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191
++D+L+ + + E+R++ G +KG A++ F+++ A + +EE E+ G+ +
Sbjct: 263 TEDELKEVFE---DAVEIRLVS--QDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 317
Query: 192 KCSAAQAK-HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL---------VKDPQNAN- 240
K R W + ++ + L +K PQN +
Sbjct: 318 SLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHG 377
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSN-PKFKLDDNAPTVSWADPRNAESSAASQVKALYVK 299
+++G+AFIE+ A E +++ +++ K +++ + PR + ++ + K L+VK
Sbjct: 378 KSKGYAFIEF---ASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVK 434
Query: 300 NLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359
L +D T++ LKE F G + ++ + G + +GFV F A A + E E
Sbjct: 435 GLSEDTTEETLKESF--EGSVRARIVTDRETGSSKG-FGFVDFNSEEDAKTAKEAMEDGE 491
Query: 360 IDGQVLDCSLAKPQ 373
IDG + AKP+
Sbjct: 492 IDGNKVTLDWAKPK 505
Score = 145 (56.1 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 75/322 (23%), Positives = 141/322 (43%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDE--KKKHA-ELLALPPHGSE------VYLGGIPHDA 131
D D + + +E +K A + E K+K A E GSE +++G +
Sbjct: 119 DEEDDEDEEEEEEPVKAAPGKRKKEMTKQKEAPEAKKQKIEGSEPTTPFNLFIGNLNKSV 178
Query: 132 SD-----DDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
++ DL F K+ +VR +G + + +V F + E +A+E L ++
Sbjct: 179 AELKVAISDL--FAKNDLAAVDVR------TGTNRKFGYVDFESAEDLEKALE-LTGLKV 229
Query: 187 KGKKIKCSA--------AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
G +IK +A L N+ N ED++++ + + I LV
Sbjct: 230 FGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKE----VFEDAVEIRLVSQD-- 283
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA------DPRNAESSAAS- 291
+++G A+IE+ + A AE + ++ + +D + ++ + R ++S S
Sbjct: 284 -GRSKGIAYIEFKSEADAEKNLEEKQGAE--IDGRSVSLYYTGEKGQRQERTGKNSTWSG 340
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+ K L + NL T++ L+E+F K T + +P G+ + Y F+ FA A +A
Sbjct: 341 ESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNPHGKSKG-YAFIEFASFEDAKEA 396
Query: 352 LKNTEKYEIDGQVLDCSLAKPQ 373
L + K EI+G+ + L P+
Sbjct: 397 LNSCNKMEIEGRTIRLELQGPR 418
Score = 134 (52.2 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 42/213 (19%), Positives = 101/213 (47%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFC 140
DG +Y G++ + + K+ ++ L L + + A+++ L+
Sbjct: 313 DGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVL---------SNLSYSATEETLQEVF 363
Query: 141 KSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC------- 193
+ + T +++ + G++KGYAF+ F + E A +A+ N E++G+ I+
Sbjct: 364 E---KATFIKVPQNPH-GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRG 419
Query: 194 ---SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
+ +Q LF+ + + E+ ++++ G + +V D + + ++GF F+++
Sbjct: 420 SPNARSQPSKTLFVKGLSEDTTEETLKESFE----GSVRARIVTDRETGS-SKGFGFVDF 474
Query: 251 YNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 283
+ A+ +++ M + + +D N T+ WA P+
Sbjct: 475 NSEEDAKTAKEAMEDGE--IDGNKVTLDWAKPK 505
Score = 131 (51.2 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 49/208 (23%), Positives = 91/208 (43%)
Query: 185 ELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRG 244
E K +KI+ S LFIGN+ ++ E ++ A++ + +L NR
Sbjct: 152 EAKKQKIEGSEPTTPFNLFIGNLNKSVAE--LKVAISDL---FAKNDLAAVDVRTGTNRK 206
Query: 245 FAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKD 304
F ++++ + AE + + K+ N + P+ +S + L KNL +
Sbjct: 207 FGYVDFES---AEDLEKALELTGLKVFGNE--IKLEKPKGRDSKKVRAARTLLAKNLSFN 261
Query: 305 ITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV 364
IT+D LKE+F +I V ++ G+ + ++ F + A K L+ + EIDG+
Sbjct: 262 ITEDELKEVFEDAVEIRLV----SQDGRSKG-IAYIEFKSEADAEKNLEEKQGAEIDGRS 316
Query: 365 LDCSLAKPQADQKTSGGSNSQKSALNPT 392
+ + ++ G NS S + T
Sbjct: 317 VSLYYTGEKGQRQERTGKNSTWSGESKT 344
Score = 42 (19.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 90 DGDEEMKVAESDKDDEKKK 108
D DEE + E D+D+E+++
Sbjct: 112 DEDEEDEDEEDDEDEEEEE 130
Score = 42 (19.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKHAE 111
+G +A+K D DE+ + D++DE ++ E
Sbjct: 95 NGKNAKKE-DRDEDEDEEDEDEEDEDEEDDE 124
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 184 (69.8 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 65/264 (24%), Positives = 122/264 (46%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G + D ++D L + G + RI + + GY +V FR A A+ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 182 NSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
N + GK + +Q RL IGN+ +N + +A+ + SI K
Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVC 139
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS-WADPRNAESSAASQVKA- 295
+ N ++G+A++ + + A A + M+ +L++ V + P + ++ KA
Sbjct: 140 DDNGSKGYAYVHFDSLAAANRAIWHMNG--VRLNNRQVYVGRFKFPEERAAEVRTRDKAT 197
Query: 296 ---LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
++VKN D+ D+LKELF+ +G V + G+ + +GFV + +A KA+
Sbjct: 198 FTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKG-FGFVRYETHEAAQKAV 256
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQ 376
+ IDG+VL A+ + ++
Sbjct: 257 LDLHGKSIDGKVLYVGRAQKKIER 280
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 188 (71.2 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 63/269 (23%), Positives = 126/269 (46%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KG+ I+ +Q L +GNV +N E KA+ T G ++S ++
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS-WADPRNAESSAAS 291
V D + RG+ F+ + A + Q M+ L+D V + R E +
Sbjct: 131 VCDEHGS---RGYGFVHFETQEAANRAIQTMNG--MLLNDRKVFVGHFKSRRERELEYGA 185
Query: 292 QVKA---LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
+V +Y+KN +D+ RL+E+F+ G V + G+ R +GFV++ A
Sbjct: 186 KVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRG-FGFVNYGNHEEA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA+ E++G+++ A+ + +++
Sbjct: 245 QKAVSEMNGKEVNGRMIYVGRAQKRIERQ 273
Score = 124 (48.7 bits), Expect = 0.00017, P = 0.00017
Identities = 51/187 (27%), Positives = 89/187 (47%)
Query: 209 RNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 264
+N+GED D +R+ + G +S++++ D + ++RGF F+ Y NH A+ + +M
Sbjct: 196 KNFGEDMDDKRLREIFSAFG-NTLSVKVMMD--DTGRSRGFGFVNYGNHEEAQKAVSEM- 251
Query: 265 NPKFKLDDNAPTVSWADPRNAESSAAS----QVKA----------LYVKNLPKDITQDRL 310
N K +++ V A R Q+K LYVKNL I DRL
Sbjct: 252 NGK-EVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 311 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370
++ F+ +G IT + + G + +GFV F+ A KA+ + + L +LA
Sbjct: 311 RKEFSPYGTITSAKVM-TEGGHSKG-FGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 371 KPQADQK 377
+ + ++K
Sbjct: 369 QRKEERK 375
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 164 (62.8 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 47/157 (29%), Positives = 83/157 (52%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +++++ IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 94
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 95 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
G+I T ++ G R GF+ F +R A +A+K
Sbjct: 149 GRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIK 184
Score = 137 (53.3 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 37/137 (27%), Positives = 72/137 (52%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++L+ SIGE+ ++++ K +G++ GY FV + + A +AI LN L
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + ++ + ++ G +I+ ++ D Q
Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 163
Query: 241 QNRGFAFIEYYNHACAE 257
+RG FI + AE
Sbjct: 164 ISRGVGFIRFDKRIEAE 180
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 187 (70.9 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 63/269 (23%), Positives = 126/269 (46%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KG+ I+ +Q L +GNV +N + KA+ T G ++S ++
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS-WADPRNAESSAAS 291
V D + RG+ F+ + A + Q M+ L+D V + R E +
Sbjct: 131 VCDEYGS---RGYGFVHFETQEAANRAIQTMNG--MLLNDRKVFVGHFKSRRERELEYGA 185
Query: 292 QVKA---LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
+V +Y+KN +D+ RLKE+F+ G V + G+ R +GFV++ A
Sbjct: 186 KVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRG-FGFVNYGNHEEA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA+ E++G+++ A+ + +++
Sbjct: 245 QKAVTEMNGKEVNGRMVYVGRAQKRIERQ 273
Score = 132 (51.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 52/186 (27%), Positives = 88/186 (47%)
Query: 209 RNWGED--DMR-KAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 265
+N+GED D R K + +S++++ D N+ ++RGF F+ Y NH A+ + +M N
Sbjct: 196 KNFGEDMDDKRLKEIFSAFGNTLSVKVMMD--NSGRSRGFGFVNYGNHEEAQKAVTEM-N 252
Query: 266 PKFKLDDNAPTVSWADPRNAESSAAS----QVKA----------LYVKNLPKDITQDRLK 311
K +++ V A R Q+K LYVKNL I DRL+
Sbjct: 253 GK-EVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 312 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
+ F+ +G IT + + G + +GFV F+ A KA+ + + L +LA+
Sbjct: 312 KEFSPYGTITSTKVM-TEGGHSKG-FGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 372 PQADQK 377
+ ++K
Sbjct: 370 RKEERK 375
>UNIPROTKB|D6R9M7 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00967035
ProteinModelPortal:D6R9M7 SMR:D6R9M7 Ensembl:ENST00000505414
HOGENOM:HOG000206189 ArrayExpress:D6R9M7 Bgee:D6R9M7 Uniprot:D6R9M7
Length = 159
Score = 163 (62.4 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 35/94 (37%), Positives = 57/94 (60%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVP 208
+A+ ELN+ E++ G+ + + RLFIG +P
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIP 159
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 190 (71.9 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 59/256 (23%), Positives = 118/256 (46%)
Query: 132 SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191
++D+L+ + + E+R++ G +KG A++ F+++ A + +EE E+ G+ +
Sbjct: 410 TEDELKEVFE---DAVEIRLVS--QDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 464
Query: 192 KCSAAQAK-HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL---------VKDPQNAN- 240
K R W + ++ + L +K PQN +
Sbjct: 465 SLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHG 524
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSN-PKFKLDDNAPTVSWADPRNAESSAASQVKALYVK 299
+++G+AFIE+ A E +++ +++ K +++ + PR + ++ + K L+VK
Sbjct: 525 KSKGYAFIEF---ASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVK 581
Query: 300 NLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359
L +D T++ LKE F G + ++ + G + +GFV F A A + E E
Sbjct: 582 GLSEDTTEETLKESF--EGSVRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGE 638
Query: 360 IDGQVLDCSLAKPQAD 375
IDG + AKP+ +
Sbjct: 639 IDGNKVTLDWAKPKGE 654
Score = 149 (57.5 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 66/300 (22%), Positives = 134/300 (44%)
Query: 91 GDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVR 150
G + ++ + + E KK + P +++G + + S +L+ +I E+
Sbjct: 283 GKRKKEMTKQKEAPEAKKQKIEGSEPTTPFNLFIGNLNPNKSVAELK---VAISELFAKN 339
Query: 151 IMKGKD--SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA--------AQAKH 200
+ D +G + + +V F + E +A+E L ++ G +IK +A
Sbjct: 340 DLAAVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAAR 398
Query: 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 260
L N+ N ED++++ + + I LV +++G A+IE+ + A AE +
Sbjct: 399 TLLAKNLSFNITEDELKE----VFEDAVEIRLVSQD---GRSKGIAYIEFKSEADAEKNL 451
Query: 261 QKMSNPKFKLDDNAPTVSWA------DPRNAESSAAS-QVKALYVKNLPKDITQDRLKEL 313
++ + +D + ++ + R ++S S + K L + NL T++ L+E+
Sbjct: 452 EEKQGAE--IDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEV 509
Query: 314 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373
F K T + +P G+ + Y F+ FA A +AL + K EI+G+ + L P+
Sbjct: 510 FE---KATFIKVPQNPHGKSKG-YAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPR 565
Score = 141 (54.7 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 70/318 (22%), Positives = 130/318 (40%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDAS------DD 134
D D + D DEE E ++DD +++ E+ P G + +P A +D
Sbjct: 194 DDDDEEDDDDDDEE----EEEEDDSEEEVMEIT--PAKGKKTPAKVVPVKAKSVAEEEED 247
Query: 135 DLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194
D + E E +D E + V + + ++ + E K +KI+ S
Sbjct: 248 DEDDEDEEEDEDEEDE-EDDEDEDEEEEEEPVKAAPGKRKKEMTKQKEAPEAKKQKIEGS 306
Query: 195 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHA 254
LFIGN+ N +++ A++++ +L NR F ++++ +
Sbjct: 307 EPTTPFNLFIGNLNPNKSVAELKVAISEL---FAKNDLAAVDVRTGTNRKFGYVDFES-- 361
Query: 255 CAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELF 314
AE + + K+ N + P+ +S + L KNL +IT+D LKE+F
Sbjct: 362 -AEDLEKALELTGLKVFGNE--IKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVF 418
Query: 315 AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 374
+I V ++ G+ + ++ F + A K L+ + EIDG+ + +
Sbjct: 419 EDAVEIRLV----SQDGRSKG-IAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 473
Query: 375 DQKTSGGSNSQKSALNPT 392
++ G NS S + T
Sbjct: 474 QRQERTGKNSTWSGESKT 491
Score = 134 (52.2 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 42/213 (19%), Positives = 101/213 (47%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFC 140
DG +Y G++ + + K+ ++ L L + + A+++ L+
Sbjct: 460 DGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVL---------SNLSYSATEETLQEVF 510
Query: 141 KSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC------- 193
+ + T +++ + G++KGYAF+ F + E A +A+ N E++G+ I+
Sbjct: 511 E---KATFIKVPQNPH-GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRG 566
Query: 194 ---SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
+ +Q LF+ + + E+ ++++ G + +V D + + ++GF F+++
Sbjct: 567 SPNARSQPSKTLFVKGLSEDTTEETLKESFE----GSVRARIVTDRETGS-SKGFGFVDF 621
Query: 251 YNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 283
+ A+ +++ M + + +D N T+ WA P+
Sbjct: 622 NSEEDAKAAKEAMEDGE--IDGNKVTLDWAKPK 652
Score = 40 (19.1 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 90 DGDEEMKVAESDKDDEKKKHAE 111
D DEE E D DD+ ++ E
Sbjct: 189 DEDEEDDDDEEDDDDDDEEEEE 210
Score = 39 (18.8 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKHAE 111
+G +A+K ++E + E D D+++ + E
Sbjct: 136 NGKNAKKEDSDEDEDEEDEDDSDEDEDEEDE 166
Score = 37 (18.1 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 22 EREKPIESEERVDLDEDND 40
E E+ E EE + DED D
Sbjct: 252 EDEEEDEDEEDEEDDEDED 270
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 189 (71.6 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 59/256 (23%), Positives = 118/256 (46%)
Query: 132 SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191
++D+L+ + + E+R++ G++KG A++ F+++ A + +EE E+ G+ +
Sbjct: 406 TEDELKEVFE---DALEIRLVS--QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 460
Query: 192 KCSAAQAK-HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL---------VKDPQNAN- 240
K R W + ++ + L +K PQN
Sbjct: 461 SLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQQG 520
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSN-PKFKLDDNAPTVSWADPRNAESSAASQVKALYVK 299
+++G+AFIE+ A E +++ +++ K +++ + PR + ++ + K L+VK
Sbjct: 521 KSKGYAFIEF---ASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVK 577
Query: 300 NLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359
L +D T++ LKE F G + ++ + G + +GFV F A A + E E
Sbjct: 578 GLSEDTTEETLKESF--EGSVRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGE 634
Query: 360 IDGQVLDCSLAKPQAD 375
IDG + AKP+ +
Sbjct: 635 IDGNKVTLDWAKPKGE 650
Score = 148 (57.2 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 73/317 (23%), Positives = 135/317 (42%)
Query: 84 DAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDAS-----DDDLRH 138
D + D +EE + E + D E+++ E+ P G + +P A DDD
Sbjct: 190 DEDEEEDEEEEEEDEEEEDDSEEEEAMEIT--PAKGKKAPAKVVPVKAKNVAEEDDDDEE 247
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTF---RTKELASQAIEELNSCELKGKKIKCSA 195
+ E E + ++ E + R KE+ Q +E+ E K +K++ S
Sbjct: 248 EDEDEEEDEEEEEDEEEEEEEEEEEPVKPAPGKRKKEMTKQ--KEVP--EAKKQKVEGSE 303
Query: 196 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHAC 255
+ LFIGN+ N +++ A+++ P + V D + NR F ++++ +
Sbjct: 304 STTPFNLFIGNLNPNKSVAELKVAISE--PFAKNDLAVVDVRTGT-NRKFGYVDFES--- 357
Query: 256 AEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFA 315
AE + + K+ N + P+ +S + L KNL +IT+D LKE+F
Sbjct: 358 AEDLEKALELTGLKVFGNE--IKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFE 415
Query: 316 HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375
+I V ++ G+ + ++ F + A K L+ + EIDG+ + +
Sbjct: 416 DALEIRLV----SQDGKSKG-IAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQ 470
Query: 376 QKTSGGSNSQKSALNPT 392
++ G NS S + T
Sbjct: 471 RQERTGKNSTWSGESKT 487
Score = 137 (53.3 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 42/213 (19%), Positives = 102/213 (47%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFC 140
DG +Y G++ + + K+ ++ L L + + A+++ L+
Sbjct: 456 DGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVL---------SNLSYSATEETLQEVF 506
Query: 141 KSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC------- 193
+ + T +++ + + G++KGYAF+ F + E A +A+ N E++G+ I+
Sbjct: 507 E---KATFIKVPQNQQ-GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRG 562
Query: 194 ---SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
+ +Q LF+ + + E+ ++++ G + +V D + + ++GF F+++
Sbjct: 563 SPNARSQPSKTLFVKGLSEDTTEETLKESFE----GSVRARIVTDRETGS-SKGFGFVDF 617
Query: 251 YNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 283
+ A+ +++ M + + +D N T+ WA P+
Sbjct: 618 NSEEDAKAAKEAMEDGE--IDGNKVTLDWAKPK 648
Score = 41 (19.5 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 84 DAQKHYDGDEEMKVAESDKDDEKKKHAE 111
D+ + D D++ ++ D++DE++ E
Sbjct: 143 DSDEDEDDDDDEDDSDEDEEDEEEDEFE 170
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 179 (68.1 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 50/170 (29%), Positives = 82/170 (48%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + D+LR SIGEV ++++ K +G + GY FV + T + A +AI LN L
Sbjct: 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL 86
Query: 187 KGKKIKCSAAQAKHR------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ L+I +PRN + D+ ++ G +I+ ++ D Q
Sbjct: 87 QSKTIKVSYARPSSEVIKDANLYISGLPRNMTQKDVEDMFSRFGR-IINSRVLVD-QTTG 144
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG AFI + + AE + + K TV +A N + A
Sbjct: 145 LSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVA 194
Score = 146 (56.5 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 44/171 (25%), Positives = 83/171 (48%)
Query: 193 CSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN 252
C + L + +P+N +D++R + IG V S +L++D + A + G+ F+ Y
Sbjct: 13 CRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGE-VESAKLIRD-KVAGHSLGYGFVNYVT 70
Query: 253 HACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKE 312
AE + ++ +L VS+A P SS + LY+ LP+++TQ +++
Sbjct: 71 AKDAERAINTLNG--LRLQSKTIKVSYARP----SSEVIKDANLYISGLPRNMTQKDVED 124
Query: 313 LFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 362
+F+ G+I V+ G R F+ F +RS A +A+ + ++ G
Sbjct: 125 MFSRFGRIINSRVLVDQTTGLSRG-VAFIRFDKRSEAEEAITSFNGHKPPG 174
Score = 87 (35.7 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 15/63 (23%), Positives = 32/63 (50%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+ G+P + + D+ G + R++ + +G ++G AF+ F + A +AI
Sbjct: 106 ANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 180 ELN 182
N
Sbjct: 166 SFN 168
Score = 79 (32.9 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 32/147 (21%), Positives = 58/147 (39%)
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP--KFKLDD-NAPTVSWAD 281
PG VK N NQN+ A + H+ A + + +F+ +S
Sbjct: 173 PGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHMSGLS 232
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
N +A+S +++ NL +D + L ++F G +T V + + +GFV
Sbjct: 233 GVNVPGNASSGW-CIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 291
Query: 342 FAERSSAMKALKNTEKYEIDGQVLDCS 368
A A+ + Y + ++L S
Sbjct: 292 MTNYEEAAMAIASLNGYRLGDKILQVS 318
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 149 (57.5 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 39/149 (26%), Positives = 80/149 (53%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
P ++++G IP + + DL+ + G++ E+ ++K K +G KG AF+T+ +E A +
Sbjct: 4 PDAIKLFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIK 63
Query: 177 AIEELN-SCELKG--KKIKCSAAQAKHR-----LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A L+ S G + I+ A ++ R LF+G + + ++D+RK G G+
Sbjct: 64 AQSALHYSSGYSGMNRPIQVKPADSEGRGEDRKLFVGMLGKQQSDEDVRKIFEPFG-GID 122
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAE 257
+++ P ++ G AF+++ +H+ A+
Sbjct: 123 ECTVLRGPDGTSK-AGCAFVKFQSHSEAQ 150
Score = 120 (47.3 bits), Expect = 0.00028, P = 0.00028
Identities = 36/154 (23%), Positives = 68/154 (44%)
Query: 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 260
+LFIG +PRN E D++ + G + + ++KD + ++G AF+ Y CA S
Sbjct: 8 KLFIGQIPRNLEEKDLKPIFEQYGK-IYELTVIKD-KYTGMHKGCAFLTY----CARESA 61
Query: 261 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
K + + + A+S + + L+V L K + + ++++F G I
Sbjct: 62 IKAQSALHYSSGYSGMNRPIQVKPADSEGRGEDRKLFVGMLGKQQSDEDVRKIFEPFGGI 121
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
+ + G ++ FV F S A A+ +
Sbjct: 122 DECTVLRGPDGTSKAGCAFVKFQSHSEAQSAINS 155
Score = 89 (36.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++G + SD+D+R + G + E +++G D G AFV F++ A AI
Sbjct: 96 KLFVGMLGKQQSDEDVRKIFEPFGGIDECTVLRGPDGTSKAGCAFVKFQSHSEAQSAINS 155
Query: 181 LN 182
L+
Sbjct: 156 LH 157
Score = 77 (32.2 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 16/78 (20%), Positives = 38/78 (48%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
+++ +LP++ T + ++F G + + + + +GFV F +SA A++
Sbjct: 359 VFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQTAIQAM 418
Query: 356 EKYEIDGQVLDCSLAKPQ 373
++I + L L +P+
Sbjct: 419 NGFQIGMKRLKVQLKRPK 436
Score = 71 (30.1 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 22/84 (26%), Positives = 44/84 (52%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+FI ++P+ + + +M + G VIS ++ D + NQ++ F F+ + N A A+ + Q
Sbjct: 359 VFIYHLPQEFTDSEMLQMFLPFG-NVISAKVFVD-RATNQSKCFGFVSFDNPASAQTAIQ 416
Query: 262 KMSNPKFKLDDNAPTVSWADPRNA 285
M+ F++ V P++A
Sbjct: 417 AMNG--FQIGMKRLKVQLKRPKDA 438
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 161 (61.7 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 24/78 (30%), Positives = 55/78 (70%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+++Y+G + +D + D+L+ F GE+ E +++ +++G +KG+AF+T+ T++ A +A+
Sbjct: 18 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77
Query: 180 ELNSCELKGKKIKCSAAQ 197
+ N +L+G+KI+ + A+
Sbjct: 78 KANGIDLQGRKIRVNIAR 95
Score = 103 (41.3 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 24/97 (24%), Positives = 52/97 (53%)
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAM 349
SQ K +YV +L D+T D L+ F +G+I + +I + G+ + + F+ + + +A
Sbjct: 16 SQNK-IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKG-FAFITYGTQDAAQ 73
Query: 350 KALKNTEKYEIDGQVLDCSLAKPQA-DQKTSGGSNSQ 385
+A+ ++ G+ + ++A+ D++ GGS +
Sbjct: 74 EAVSKANGIDLQGRKIRVNIARENTGDRRRDGGSGGR 110
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 161 (61.7 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 24/78 (30%), Positives = 55/78 (70%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+++Y+G + +D + D+L+ F GE+ E +++ +++G +KG+AF+T+ T++ A +A+
Sbjct: 18 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77
Query: 180 ELNSCELKGKKIKCSAAQ 197
+ N +L+G+KI+ + A+
Sbjct: 78 KANGIDLQGRKIRVNIAR 95
Score = 103 (41.3 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 24/97 (24%), Positives = 52/97 (53%)
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAM 349
SQ K +YV +L D+T D L+ F +G+I + +I + G+ + + F+ + + +A
Sbjct: 16 SQNK-IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKG-FAFITYGTQDAAQ 73
Query: 350 KALKNTEKYEIDGQVLDCSLAKPQA-DQKTSGGSNSQ 385
+A+ ++ G+ + ++A+ D++ GGS +
Sbjct: 74 EAVSKANGIDLQGRKIRVNIARENTGDRRRDGGSGGR 110
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 184 (69.8 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 60/229 (26%), Positives = 111/229 (48%)
Query: 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMR 217
GYA+V F+ A +A++ +N +KGK ++ +Q L +GN+ +N +
Sbjct: 8 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDN 67
Query: 218 KAV----TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN 273
KA+ + G ++S ++V D N ++G+ F+ + AE + +KM+ L+D
Sbjct: 68 KALYDTFSAFG-NILSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDR 121
Query: 274 APTVSW---ADPRNAESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 329
V R AE A A + +Y+KN +D+ +RLK+LF G V + +
Sbjct: 122 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 181
Query: 330 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
G+ + +GFV F A KA+ E++G+ + A+ + +++T
Sbjct: 182 SGKSKG-FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 229
Score = 145 (56.1 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 33/94 (35%), Positives = 51/94 (54%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ D D+ L+ G V++M +SG++KG+ F
Sbjct: 132 KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGF 190
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V+F E A +A++E+N EL GK+I AQ K
Sbjct: 191 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 224
Score = 119 (46.9 bits), Expect = 0.00054, P = 0.00054
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 205
D +KGY FV F T+E A +AIE++N L +K+ K A+ A+ + F
Sbjct: 88 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 147
Query: 206 NVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+N+GED D ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 148 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 204
Query: 262 KMS 264
+M+
Sbjct: 205 EMN 207
>DICTYBASE|DDB_G0279539 [details] [associations]
symbol:DDB_G0279539 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0279539 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000031 eggNOG:COG1404
RefSeq:XP_001732991.1 ProteinModelPortal:B0G128
EnsemblProtists:DDB0234241 GeneID:8622096 KEGG:ddi:DDB_G0279539
OMA:MSKDEND Uniprot:B0G128
Length = 373
Score = 180 (68.4 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 63/281 (22%), Positives = 119/281 (42%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ I +D+ L+ IG+V E ++K K SGE KGY FV F A AIE
Sbjct: 12 VFVSDIARGVTDEQLKEEFSKIGDVLEAVVVKNKHSGETKGYGFVKFYHMADAQHAIETP 71
Query: 182 NSCELK----GKK--IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
N K GK +K + A +K+ L+IG++P+ E ++R + +IG + K
Sbjct: 72 NPPLFKDGITGKPQMVKVTLADSKNTLYIGHIPKGLTEKEVRAELEEIGMCTL-----KS 126
Query: 236 PQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKA 295
+ ++ + + ++ +H + + + K+ P+ R+ + + K
Sbjct: 127 FEFDGPSKLYGYAQFKDHETTIKAIKSIQKSKYTAS-LTPS-----KRSNDDGKSPTTKV 180
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
L+V+ + + L++ I K+V+P + + F++ S A + +
Sbjct: 181 LFVRGIRSQDEGELLRKQLGPE-LIEKIVVPLDSQKKTPLGHAFIYCNSTSDAKIIMDHN 239
Query: 356 EKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPH 396
++ GQ L S P+ + G + P Y H
Sbjct: 240 HDFDFMGQKLTISWGLPKQRKMMDGYFAANTPLAAPPYDYH 280
Score = 138 (53.6 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 35/159 (22%), Positives = 84/159 (52%)
Query: 199 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEY 258
++ +F+ ++ R ++ +++ +KIG V+ +VK+ +++ + +G+ F+++Y+ A A++
Sbjct: 9 EYGVFVSDIARGVTDEQLKEEFSKIGD-VLEAVVVKN-KHSGETKGYGFVKFYHMADAQH 66
Query: 259 SRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 318
+ + + P FK D P+ + + A LY+ ++PK +T+ KE+ A
Sbjct: 67 AIETPNPPLFK--DGIT----GKPQMVKVTLADSKNTLYIGHIPKGLTE---KEVRAELE 117
Query: 319 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357
+I + + YG+ F + + +KA+K+ +K
Sbjct: 118 EIGMCTLKSFEFDGPSKLYGYAQFKDHETTIKAIKSIQK 156
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 150 (57.9 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 40/145 (27%), Positives = 78/145 (53%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++G IP + + DLR + G++ E+ ++K + +G KG AF+T+ +E A +A
Sbjct: 48 KLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQTA 107
Query: 181 LNSCE-LKG--KKIKCSAAQAKHR-----LFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
L+ + L G + I+ A ++ R LF+G + + EDD+R+ G + +
Sbjct: 108 LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQCEDDVRRLFESFG-SIEECTI 166
Query: 233 VKDPQNANQNRGFAFIEYYNHACAE 257
++ P ++G AF++Y HA A+
Sbjct: 167 LRGPDG--NSKGCAFVKYSTHAEAQ 189
Score = 123 (48.4 bits), Expect = 0.00016, P = 0.00016
Identities = 41/159 (25%), Positives = 72/159 (45%)
Query: 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 260
+LFIG +PRN E D+R + G + + ++KD + ++G AF+ Y A ++
Sbjct: 48 KLFIGQIPRNLDEKDLRPLFEEFGK-IYELTVLKD-RFTGMHKGCAFLTYCARESALKAQ 105
Query: 261 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
+ K N P + A+S + + + L+V L K +D ++ LF G I
Sbjct: 106 TALHEQKTLPGMNRPI----QVKPADSESRGEDRKLFVGMLNKQQCEDDVRRLFESFGSI 161
Query: 321 TKVVIPPAKPGQERSRYGFVHF---AERSSAMKALKNTE 356
+ I G + FV + AE +A+ AL ++
Sbjct: 162 EECTILRGPDGNSKG-CAFVKYSTHAEAQAAISALHGSQ 199
Score = 97 (39.2 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++G + +DD+R +S G + E I++G D G +KG AFV + T A AI
Sbjct: 136 KLFVGMLNKQQCEDDVRRLFESFGSIEECTILRGPD-GNSKGCAFVKYSTHAEAQAAISA 194
Query: 181 LNSCE 185
L+ +
Sbjct: 195 LHGSQ 199
Score = 77 (32.2 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 21/80 (26%), Positives = 41/80 (51%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKI--TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
L++ +LP++ L ++F G + +KV + A Q + +GFV F SA A++
Sbjct: 437 LFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRAT-NQSKC-FGFVSFDNPGSAQAAIQ 494
Query: 354 NTEKYEIDGQVLDCSLAKPQ 373
+ ++I + L L +P+
Sbjct: 495 SMNGFQIGMKRLKVQLKRPK 514
Score = 75 (31.5 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 22/84 (26%), Positives = 44/84 (52%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
LFI ++P+ +G+ ++ + G VIS ++ D + NQ++ F F+ + N A+ + Q
Sbjct: 437 LFIYHLPQEFGDGELMQMFLPFG-NVISSKVFVD-RATNQSKCFGFVSFDNPGSAQAAIQ 494
Query: 262 KMSNPKFKLDDNAPTVSWADPRNA 285
M+ F++ V P++A
Sbjct: 495 SMNG--FQIGMKRLKVQLKRPKDA 516
>UNIPROTKB|Q6DCB7 [details] [associations]
symbol:dnd1 "Dead end protein homolog 1" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0017091 "AU-rich element binding"
evidence=ISS] [GO:0060965 "negative regulation of gene silencing by
miRNA" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0060965 HOVERGEN:HBG051370 EMBL:BC078132
EMBL:AY321494 UniGene:Xl.29785 ProteinModelPortal:Q6DCB7
Xenbase:XB-GENE-1015636 Uniprot:Q6DCB7
Length = 371
Score = 179 (68.1 bits), Expect = 4.6e-11, P = 4.6e-11
Identities = 48/165 (29%), Positives = 84/165 (50%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P GSEV++G IP D +D L +S+G++ E R+M SG +G+A+ + ++ A
Sbjct: 73 PVSGSEVFIGKIPQDIYEDKLIPLFQSVGKLYEFRLMM-TFSGLNRGFAYARYISRRQAI 131
Query: 176 QAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI LN E+ KG I + K L + +P N+ E+ ++ + ++ GV SI L
Sbjct: 132 SAIMSLNGFEITKGCCIVVCRSTEKSELALDGLPGNFDENMLKNVLDEVTSGVSSISL-- 189
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 279
P +++ A ++Y +H A +++ + L TV+W
Sbjct: 190 HPSPTKESQVLAVVKYDSHRAAAMAKKTLCEGSPILPGLPLTVNW 234
>TAIR|locus:2122990 [details] [associations]
symbol:AT4G19610 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14787
OMA:VFREKNV IPI:IPI00517416 RefSeq:NP_193696.3 UniGene:At.50354
ProteinModelPortal:F4JT92 SMR:F4JT92 PRIDE:F4JT92
EnsemblPlants:AT4G19610.1 GeneID:827703 KEGG:ath:AT4G19610
Uniprot:F4JT92
Length = 816
Score = 120 (47.3 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 30/100 (30%), Positives = 52/100 (52%)
Query: 120 SEVYLGGIPHDASDDDLR-HFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
S + + +P +D LR HF + GE+T+ ++M+ D G+++ + F+ FR+ + A QAI
Sbjct: 2 SRICVKNLPKHVKEDQLRDHFSQK-GEITDAKLMRSND-GKSRQFGFIGFRSAQEAQQAI 59
Query: 179 EELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRK 218
+ N+ L I A H++ N PR W +K
Sbjct: 60 KYFNNTYLGTSLIIVEIA---HKVGDENAPRPWSRLSHKK 96
Score = 117 (46.2 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 29/115 (25%), Positives = 62/115 (53%)
Query: 87 KHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEV 146
K DGD M+V K ++ K L +++ +P+ A++++L + G++
Sbjct: 264 KDDDGDA-MEVEGDGKVAQESKAVSDDVLDT--GRLFVRNLPYTATEEELMEHFSTFGKI 320
Query: 147 TEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR 201
+EV ++ K++ ++G A++ + E A++A+EEL++ +G+ + AKHR
Sbjct: 321 SEVHLVLDKETKRSRGIAYILYLIPECAARAMEELDNSSFQGRLLHI--LPAKHR 373
Score = 114 (45.2 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 40/168 (23%), Positives = 80/168 (47%)
Query: 202 LFIGNVPRNWGEDDMRKAVTK-IGPG-VISIELVKDPQNANQ-NRGFAFIEYYNHACAEY 258
L + N+ ++ ++K TK + G ++S+ ++K +N + G+ F+E+ + A
Sbjct: 604 LNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATS 663
Query: 259 SRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVK-----ALYVKNLPKDITQDRLKEL 313
+ + LD +A + + + + ++ K L+VKN+ + T+ L++L
Sbjct: 664 VYRDLQGTV--LDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFEATKRELRQL 721
Query: 314 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM---KALKNTEKY 358
F+ G+I + +P GQ Y FV F + A+ KAL +T Y
Sbjct: 722 FSPFGQIKSMRLPKKNIGQYAG-YAFVEFVTKQEALNAKKALASTHFY 768
Score = 89 (36.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 30/111 (27%), Positives = 54/111 (48%)
Query: 280 ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YG 338
A A S L+V+NLP T++ L E F+ GKI++V + K +RSR
Sbjct: 280 AQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKE-TKRSRGIA 338
Query: 339 FVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ--ADQKTSGGSNSQKS 387
++ + A +A++ + G++L AK + +D++ + SN K+
Sbjct: 339 YILYLIPECAARAMEELDNSSFQGRLLHILPAKHRETSDKQVNDTSNLPKT 389
Score = 87 (35.7 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 29/101 (28%), Positives = 42/101 (41%)
Query: 291 SQVKALYVKNLPKDITQDRLKELFAH---HGKITKVVIPPAKPGQE--RSRYGFVHFAER 345
++ L VKNL T + LK+ F GKI V I K ++ S YGFV F
Sbjct: 599 TESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSV 658
Query: 346 SSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQK 386
+A ++ + +DG L + + K SN K
Sbjct: 659 ETATSVYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKDK 699
Score = 85 (35.0 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 283 RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHF 342
RN + S+ L VKNLP T+ L ++F G + K+++PP K + F+
Sbjct: 478 RNGDEKNRSK-HILLVKNLPFASTEKELAQMFGKFGSLDKIILPPTKT---MALAVFLEP 533
Query: 343 AERSSAMKAL 352
AE +A+K +
Sbjct: 534 AEARAALKGM 543
Score = 85 (35.0 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 29/109 (26%), Positives = 51/109 (46%)
Query: 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 260
RLF+ N+P E+++ + + G + + LV D + ++RG A+I Y CA +
Sbjct: 295 RLFVRNLPYTATEEELMEHFSTFGK-ISEVHLVLDKET-KRSRGIAYILYLIPECAARAM 352
Query: 261 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 309
+++ N F+ + ++ E+S QV NLPK Q R
Sbjct: 353 EELDNSSFQ----GRLLHILPAKHRETSD-KQVND--TSNLPKTFKQKR 394
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 178 (67.7 bits), Expect = 5.7e-11, P = 5.7e-11
Identities = 54/194 (27%), Positives = 102/194 (52%)
Query: 194 SAAQAKH--RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYY 251
S + +H +LFIG + +++++ K G ++ + ++KDP+ ++RGF FI Y
Sbjct: 23 SITEPEHMRKLFIGGLDYRTTDENLKAHFEKWG-NIVDVVVMKDPRT-KRSRGFGFITY- 79
Query: 252 NHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAES-SAASQVKALYVKNLPKDITQDR 309
+H+ QK S P K+D A PR + +S +A + VK L+V L D +
Sbjct: 80 SHSSMIDEAQK-SRPH-KIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQS 137
Query: 310 LKELFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368
+++ F H G I + ++ + G++R + FV F + K + ++++++G+++D
Sbjct: 138 IRDYFQHFGNIVDINIVIDKETGKKRG-FAFVEFDDYDPVDKVVLQ-KQHQLNGKMVDVK 195
Query: 369 LAKP-QADQKTSGG 381
A P Q DQ+ GG
Sbjct: 196 KALPKQNDQQGGGG 209
Score = 128 (50.1 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 34/148 (22%), Positives = 75/148 (50%)
Query: 116 PPHGSEVYLGGIPHDASDDDLR-HFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
P H ++++GG+ + +D++L+ HF K G + +V +MK + ++G+ F+T+ +
Sbjct: 27 PEHMRKLFIGGLDYRTTDENLKAHFEKW-GNIVDVVVMKDPRTKRSRGFGFITYSHSSMI 85
Query: 175 SQAIEELNSCELKGKKIKCSAAQAKH------------RLFIGNVPRNWGEDDMRKAVTK 222
+A ++ ++ G+ ++ A + +LF+G + + E +R
Sbjct: 86 DEA-QKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQH 144
Query: 223 IGPGVISIELVKDPQNANQNRGFAFIEY 250
G ++ I +V D + + RGFAF+E+
Sbjct: 145 FG-NIVDINIVIDKETGKK-RGFAFVEF 170
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 160 (61.4 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 47/157 (29%), Positives = 80/157 (50%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +++++ IG + S +LV+D + Q+ G+ F+ Y AE
Sbjct: 66 SKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYMEPKDAE 123
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+
Sbjct: 124 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQF 177
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
G+I T ++ G R GF+ F R A +A+K
Sbjct: 178 GRIITSRILVDQVTGVSRG-VGFIRFDRRVEAEEAIK 213
Score = 155 (59.6 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 48/185 (25%), Positives = 94/185 (50%)
Query: 117 PHGSE-----VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTK 171
P+GSE + + +P + + ++L+ SIGE+ ++++ K +G++ GY FV +
Sbjct: 60 PNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEP 119
Query: 172 ELASQAIEELNSCELKGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGP 225
+ A +AI LN L+ K IK S A+ A R L++ +P+ + ++ + ++ G
Sbjct: 120 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQFGR 179
Query: 226 GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA 285
+I+ ++ D Q +RG FI + AE + + ++ K TV +A+ +
Sbjct: 180 -IITSRILVD-QVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANNPSQ 237
Query: 286 ESSAA 290
+SS A
Sbjct: 238 KSSQA 242
Score = 65 (27.9 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 18/73 (24%), Positives = 32/73 (43%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL D ++ L ++F G +T V + + +GFV A A+ +
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 356 EKYEIDGQVLDCS 368
Y + +VL S
Sbjct: 367 NGYRLGDRVLQVS 379
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 158 (60.7 bits), Expect = 7.2e-11, P = 7.2e-11
Identities = 45/185 (24%), Positives = 85/185 (45%)
Query: 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 260
++F+G + + + D++ TK G V + DP N ++RGF FI + E
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGE-VTDCTIKMDP-NTGRSRGFGFILFKEPGSVE--- 55
Query: 261 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
+ + + +LD DP+ A + VK ++V L + T+++++E F G+I
Sbjct: 56 KVLEQKEHRLDGRL-----IDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEI 110
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP----QADQ 376
+ +P +R + F+ F E K L+ + + + G + +A+P Q Q
Sbjct: 111 EAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEK-KFHNVSGSKCEIKVAQPKEVYQQQQ 169
Query: 377 KTSGG 381
+SGG
Sbjct: 170 FSSGG 174
Score = 150 (57.9 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 38/135 (28%), Positives = 71/135 (52%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++GG+ D S DL+ + GEVT+ I ++G ++G+ F+ F+ + +E+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 181 LNSCELKGKKI--KCSAAQAKH---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L G+ I K + A K ++F+G + E+ +R+ + G + +IEL D
Sbjct: 61 KEH-RLDGRLIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIELPMD 118
Query: 236 PQNANQNRGFAFIEY 250
P+ N+ RGF FI +
Sbjct: 119 PKT-NKRRGFVFITF 132
>DICTYBASE|DDB_G0279639 [details] [associations]
symbol:DDB_G0279639 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 dictyBase:DDB_G0279639 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 Gene3D:1.10.720.30
EMBL:AAFI02000032 eggNOG:NOG135032 RefSeq:XP_641568.1
ProteinModelPortal:Q54WI5 EnsemblProtists:DDB0220678 GeneID:8622143
KEGG:ddi:DDB_G0279639 InParanoid:Q54WI5 OMA:ENTNTNE Uniprot:Q54WI5
Length = 1009
Score = 184 (69.8 bits), Expect = 7.7e-11, P = 7.7e-11
Identities = 67/282 (23%), Positives = 125/282 (44%)
Query: 94 EMKVAES-DKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIM 152
E K +S DK ++ AE+ + + G+ ++ +L +G+V +
Sbjct: 300 EKKREDSLDKTKIQQSIAEMEGSFKKIPSIKITGLNDSLTEKELEEALNEVGKVHTITY- 358
Query: 153 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ-AKHRLFIGNVPRNW 211
G K +A V +A E+LN+ +LK + + A LF+GN+ +
Sbjct: 359 ----EGSKKDFAIVQMENHTIAK---EKLNNSKLKNCTLSITDIPLADSLLFVGNLGNDV 411
Query: 212 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 271
G++ ++K K G + I L+K+ + +N+G+AFI+Y A ++ + + F +
Sbjct: 412 GKEQLKKMFEKHGT-IDRIILIKN-RRTGENKGYAFIDYRTKLQASTAKSSLGSIVF--N 467
Query: 272 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQ-DRLKELFAHHGKITKVVIPPAKP 330
V WA+ N S S K ++V LP+ L+++F+ GKI + P
Sbjct: 468 RRTLRVDWAENCNTMESMHS--KTIFVDRLPRSFADVPILRKVFSPFGKIKDCNVVPNYY 525
Query: 331 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372
GQ R + F+ + A KA + + ++ G + + A P
Sbjct: 526 GQPRG-FAFIDYNNVEDAEKAQRMMNEKDLKGYKIRVNFANP 566
Score = 183 (69.5 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 56/201 (27%), Positives = 100/201 (49%)
Query: 93 EEMKVAESDKDDEKKKHAELLA--LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVR 150
E +A+ ++ K K+ L +P S +++G + +D + L+ + G + +
Sbjct: 371 ENHTIAKEKLNNSKLKNCTLSITDIPLADSLLFVGNLGNDVGKEQLKKMFEKHGTIDRII 430
Query: 151 IMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK------CSAAQAKHR--L 202
++K + +GE KGYAF+ +RTK AS A L S + ++ C+ ++ H +
Sbjct: 431 LIKNRRTGENKGYAFIDYRTKLQASTAKSSLGSIVFNRRTLRVDWAENCNTMESMHSKTI 490
Query: 203 FIGNVPRNWGEDD-MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
F+ +PR++ + +RK + G + +V P Q RGFAFI+Y N AE + Q
Sbjct: 491 FVDRLPRSFADVPILRKVFSPFGK-IKDCNVV--PNYYGQPRGFAFIDYNNVEDAEKA-Q 546
Query: 262 KMSNPKFKLDDNAPTVSWADP 282
+M N K L V++A+P
Sbjct: 547 RMMNEK-DLKGYKIRVNFANP 566
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 181 (68.8 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 63/270 (23%), Positives = 120/270 (44%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
P + +Y+G + ++ L +T VR+ K SG + Y + F +++ A+
Sbjct: 21 PVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANL 80
Query: 177 AIEELNSCELKGKKIKCS----AAQAKHR----LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
AIE+ N+ L GK I+ A A+ +F+ N+P + ++ K G ++
Sbjct: 81 AIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFG-NIV 139
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ ++RG+ F+++ A + Q +++ + D V +
Sbjct: 140 SCKVAT--LEDGKSRGYGFVQFEQEDAAHAAIQTLNSTI--VADKEIYVGKFMKKTDRVK 195
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSS 347
+ LY+KNL D+++D L+E FA GKI + I AK R Y FV+F
Sbjct: 196 PEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAI--AKDENRLCRGYAFVNFDNPED 253
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A +A + + + L A+ +A+++
Sbjct: 254 ARRAAETVNGTKFGSKCLYVGRAQKKAERE 283
Score = 135 (52.6 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 51/217 (23%), Positives = 101/217 (46%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++ N+ + ED +R+ + G ++S+ + KD +N RG+AF+ + N A + +
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGK-IVSLAIAKD-EN-RLCRGYAFVNFDNPEDARRAAE 259
Query: 262 KMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDR 309
++ KF K + ++ E ++V +YVKN+ +T++
Sbjct: 260 TVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEE 319
Query: 310 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369
L++ F+ G IT + + G+ + +GFV F+ A+ A+K G+ L ++
Sbjct: 320 LRKHFSQCGTITSTKLMCDEKGKSKG-FGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAI 378
Query: 370 AKPQADQKTS-----GG-----SNSQKSALNP-TYPP 395
A+ + D+K G +S +++NP TY P
Sbjct: 379 AQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAP 415
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 179 (68.1 bits), Expect = 8.4e-11, P = 8.4e-11
Identities = 49/210 (23%), Positives = 99/210 (47%)
Query: 81 DGIDAQK-HYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHF 139
DG +++ +Y+ ++ + + E ++++GG+ + +DD LR +
Sbjct: 123 DGENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDY 182
Query: 140 CKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA--- 196
+ GEV + +M+ +G ++G+ F+TF+ + ++ + + + L GK I A
Sbjct: 183 FEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEH--HLDGKIIDPKRAIPR 240
Query: 197 --QAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNH 253
Q K ++F+G VP + E++ R + G V+ L+ D ++ + RGF F+ Y N
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGR-VLDATLMMD-KDTGRPRGFGFVTYENE 298
Query: 254 ACAEYSRQKMSNPKFKLDDNAPTVSWADPR 283
+ E + MS P + V A P+
Sbjct: 299 SAVEAT---MSQPYITIHGKPVEVKRATPK 325
Score = 136 (52.9 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 46/182 (25%), Positives = 83/182 (45%)
Query: 201 RLFIGNVPRNWG--EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEY 258
++FIG + NW +D +R + G V+ +++D ++RGF F+ + N C
Sbjct: 164 KMFIGGL--NWETTDDSLRDYFEQFGE-VLDCTVMRD-STTGRSRGFGFLTFKNPKCVN- 218
Query: 259 SRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 318
+ MS + LD A PR + A ++V +P D T++ + F G
Sbjct: 219 --EVMSK-EHHLDGKIIDPKRAIPREEQEKTAK----MFVGGVPGDCTEEEFRNFFNQFG 271
Query: 319 KITKVVIPPAKP-GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
++ + K G+ R +GFV + E SA++A + I G+ ++ A P+A +
Sbjct: 272 RVLDATLMMDKDTGRPRG-FGFVTY-ENESAVEATMSQPYITIHGKPVEVKRATPKASLR 329
Query: 378 TS 379
S
Sbjct: 330 DS 331
Score = 123 (48.4 bits), Expect = 0.00014, P = 0.00014
Identities = 24/83 (28%), Positives = 45/83 (54%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+++++GG+P D ++++ R+F G V + +M KD+G +G+ FVT+ E A +A
Sbjct: 247 AKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATM 305
Query: 180 ELNSCELKGKKIKCSAAQAKHRL 202
+ GK ++ A K L
Sbjct: 306 SQPYITIHGKPVEVKRATPKASL 328
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 177 (67.4 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 64/268 (23%), Positives = 126/268 (47%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G + D ++D L + G + RI + + GY +V FR A A+ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 182 NSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV----TKIGPGVISIELV 233
N + GK + +Q RL +GN+ +N + +A+ + G ++S ++V
Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFG-NILSCKVV 138
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS-WADPRNAESSAASQ 292
D N ++G+A++ + + A A + M+ +L++ V + P + ++
Sbjct: 139 CDD---NGSKGYAYVHFDSLAAANRAIWHMNG--VRLNNRQVYVGRFKFPEERAAEVRTR 193
Query: 293 VKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
+A ++VKN+ DI ++LKELF +G V + G+ + +GFV + +A
Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG-FGFVRYETHEAA 252
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQ 376
KA+ + IDG+VL A+ + ++
Sbjct: 253 QKAVLDLHGKSIDGKVLYVGRAQKKIER 280
Score = 115 (45.5 bits), Expect = 0.00078, P = 0.00078
Identities = 32/122 (26%), Positives = 62/122 (50%)
Query: 83 IDAQKHYDGDEEMKV---AESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHF 139
ID + Y G + K+ AE + E+ + E + PP G +Y+ + +D+ L+
Sbjct: 264 IDGKVLYVGRAQKKIERLAELRRRFERLRLKEK-SRPP-GVPIYIKNLDETINDEKLKEE 321
Query: 140 CKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
S G ++ ++M + G+ KG+ V F + E A++A++E+N + K + + QA+
Sbjct: 322 FSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Query: 200 HR 201
R
Sbjct: 380 RR 381
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 174 (66.3 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 49/170 (28%), Positives = 82/170 (48%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + D+LR SIGEV ++++ K +G + GY FV + T + A +AI LN L
Sbjct: 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL 86
Query: 187 KGKKIKCSAAQAKHR------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ L+I +PR+ + D+ ++ G +I+ ++ D Q
Sbjct: 87 QSKTIKVSYARPSSEVIKDANLYISGLPRSMTQKDVEDMFSRFGR-IINSRVLVD-QTTG 144
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG AFI + + AE + + K TV +A N + A
Sbjct: 145 LSRGVAFIRFDKRSEAEEAITNFNGHKPPGSSEPITVKFAANPNQNKNVA 194
Score = 150 (57.9 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 45/171 (26%), Positives = 82/171 (47%)
Query: 193 CSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN 252
C + L + +P+N +D++R + IG V S +L++D + A + G+ F+ Y
Sbjct: 13 CRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGE-VESAKLIRD-KVAGHSLGYGFVNYVT 70
Query: 253 HACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKE 312
AE + ++ +L VS+A P SS + LY+ LP+ +TQ +++
Sbjct: 71 AKDAERAINTLNG--LRLQSKTIKVSYARP----SSEVIKDANLYISGLPRSMTQKDVED 124
Query: 313 LFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 362
+F+ G+I V+ G R F+ F +RS A +A+ N ++ G
Sbjct: 125 MFSRFGRIINSRVLVDQTTGLSRG-VAFIRFDKRSEAEEAITNFNGHKPPG 174
Score = 86 (35.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+ G+P + D+ G + R++ + +G ++G AF+ F + A +AI
Sbjct: 106 ANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 180 ELN 182
N
Sbjct: 166 NFN 168
Score = 78 (32.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 32/147 (21%), Positives = 58/147 (39%)
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP--KFKLDD-NAPTVSWAD 281
PG VK N NQN+ A + H+ A + + +F+ +S
Sbjct: 173 PGSSEPITVKFAANPNQNKNVALLSQLCHSPARRFGGPVHHQAQRFRFSPMGVDHMSGLS 232
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
N +A+S +++ NL +D + L ++F G +T V + + +GFV
Sbjct: 233 GVNVPGNASSGW-CIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 291
Query: 342 FAERSSAMKALKNTEKYEIDGQVLDCS 368
A A+ + Y + ++L S
Sbjct: 292 MTNYEEAAMAIASLNGYRLGDKILQVS 318
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 167 (63.8 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 56/204 (27%), Positives = 103/204 (50%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
VY+GG+ S+ L G V + K + +G+ +GY FV F ++E A AI+ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 182 NSCELKGKKIKCSAAQAKHR-------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
N +L GK I+ + A A ++ +FIGN+ E + + G + + ++++
Sbjct: 75 NMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMR 134
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP-TVSWADPRNAESSA-ASQ 292
DP N ++G+AFI + + ++ + + M N ++ N P TVS+A ++++ S
Sbjct: 135 DPDTGN-SKGYAFINFASFDASDAAIEAM-NGQYLC--NRPITVSYAFKKDSKGERHGSA 190
Query: 293 VKALYVKNLPKDITQ-DRLKELFA 315
+ L P ++Q DR +LFA
Sbjct: 191 AERLLAAQNP--LSQADRPHQLFA 212
Score = 51 (23.0 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 18/49 (36%), Positives = 22/49 (44%)
Query: 418 FAQPMVYGRGAAPGGMAMLPMLLPD-GRIGYVLQQP-GVQQHN-PPPQP 463
F PM + P GM P L+P G G P G Q+ PPP+P
Sbjct: 358 FGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRP 406
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 167 (63.8 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 56/204 (27%), Positives = 103/204 (50%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
VY+GG+ S+ L G V + K + +G+ +GY FV F ++E A AI+ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 182 NSCELKGKKIKCSAAQAKHR-------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
N +L GK I+ + A A ++ +FIGN+ E + + G + + ++++
Sbjct: 75 NMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMR 134
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP-TVSWADPRNAESSA-ASQ 292
DP N ++G+AFI + + ++ + + M N ++ N P TVS+A ++++ S
Sbjct: 135 DPDTGN-SKGYAFINFASFDASDAAIEAM-NGQYLC--NRPITVSYAFKKDSKGERHGSA 190
Query: 293 VKALYVKNLPKDITQ-DRLKELFA 315
+ L P ++Q DR +LFA
Sbjct: 191 AERLLAAQNP--LSQADRPHQLFA 212
Score = 51 (23.0 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 18/49 (36%), Positives = 22/49 (44%)
Query: 418 FAQPMVYGRGAAPGGMAMLPMLLPD-GRIGYVLQQP-GVQQHN-PPPQP 463
F PM + P GM P L+P G G P G Q+ PPP+P
Sbjct: 358 FGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRP 406
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 167 (63.8 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 56/204 (27%), Positives = 103/204 (50%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
VY+GG+ S+ L G V + K + +G+ +GY FV F ++E A AI+ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 182 NSCELKGKKIKCSAAQAKHR-------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
N +L GK I+ + A A ++ +FIGN+ E + + G + + ++++
Sbjct: 75 NMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMR 134
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP-TVSWADPRNAESSA-ASQ 292
DP N ++G+AFI + + ++ + + M N ++ N P TVS+A ++++ S
Sbjct: 135 DPDTGN-SKGYAFINFASFDASDAAIEAM-NGQYLC--NRPITVSYAFKKDSKGERHGSA 190
Query: 293 VKALYVKNLPKDITQ-DRLKELFA 315
+ L P ++Q DR +LFA
Sbjct: 191 AERLLAAQNP--LSQADRPHQLFA 212
Score = 51 (23.0 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 18/49 (36%), Positives = 22/49 (44%)
Query: 418 FAQPMVYGRGAAPGGMAMLPMLLPD-GRIGYVLQQP-GVQQHN-PPPQP 463
F PM + P GM P L+P G G P G Q+ PPP+P
Sbjct: 358 FGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRP 406
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 167 (63.8 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 56/204 (27%), Positives = 103/204 (50%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
VY+GG+ S+ L G V + K + +G+ +GY FV F ++E A AI+ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 182 NSCELKGKKIKCSAAQAKHR-------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
N +L GK I+ + A A ++ +FIGN+ E + + G + + ++++
Sbjct: 75 NMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMR 134
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP-TVSWADPRNAESSA-ASQ 292
DP N ++G+AFI + + ++ + + M N ++ N P TVS+A ++++ S
Sbjct: 135 DPDTGN-SKGYAFINFASFDASDAAIEAM-NGQYLC--NRPITVSYAFKKDSKGERHGSA 190
Query: 293 VKALYVKNLPKDITQ-DRLKELFA 315
+ L P ++Q DR +LFA
Sbjct: 191 AERLLAAQNP--LSQADRPHQLFA 212
Score = 51 (23.0 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 18/49 (36%), Positives = 22/49 (44%)
Query: 418 FAQPMVYGRGAAPGGMAMLPMLLPD-GRIGYVLQQP-GVQQHN-PPPQP 463
F PM + P GM P L+P G G P G Q+ PPP+P
Sbjct: 358 FGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRP 406
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 167 (63.8 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 56/204 (27%), Positives = 103/204 (50%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
VY+GG+ S+ L G V + K + +G+ +GY FV F ++E A AI+ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 182 NSCELKGKKIKCSAAQAKHR-------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
N +L GK I+ + A A ++ +FIGN+ E + + G + + ++++
Sbjct: 75 NMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMR 134
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP-TVSWADPRNAESSA-ASQ 292
DP N ++G+AFI + + ++ + + M N ++ N P TVS+A ++++ S
Sbjct: 135 DPDTGN-SKGYAFINFASFDASDAAIEAM-NGQYLC--NRPITVSYAFKKDSKGERHGSA 190
Query: 293 VKALYVKNLPKDITQ-DRLKELFA 315
+ L P ++Q DR +LFA
Sbjct: 191 AERLLAAQNP--LSQADRPHQLFA 212
Score = 51 (23.0 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 18/49 (36%), Positives = 22/49 (44%)
Query: 418 FAQPMVYGRGAAPGGMAMLPMLLPD-GRIGYVLQQP-GVQQHN-PPPQP 463
F PM + P GM P L+P G G P G Q+ PPP+P
Sbjct: 358 FGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRP 406
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 167 (63.8 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 56/204 (27%), Positives = 103/204 (50%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
VY+GG+ S+ L G V + K + +G+ +GY FV F ++E A AI+ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 182 NSCELKGKKIKCSAAQAKHR-------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
N +L GK I+ + A A ++ +FIGN+ E + + G + + ++++
Sbjct: 75 NMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMR 134
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP-TVSWADPRNAESSA-ASQ 292
DP N ++G+AFI + + ++ + + M N ++ N P TVS+A ++++ S
Sbjct: 135 DPDTGN-SKGYAFINFASFDASDAAIEAM-NGQYLC--NRPITVSYAFKKDSKGERHGSA 190
Query: 293 VKALYVKNLPKDITQ-DRLKELFA 315
+ L P ++Q DR +LFA
Sbjct: 191 AERLLAAQNP--LSQADRPHQLFA 212
Score = 51 (23.0 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 18/49 (36%), Positives = 22/49 (44%)
Query: 418 FAQPMVYGRGAAPGGMAMLPMLLPD-GRIGYVLQQP-GVQQHN-PPPQP 463
F PM + P GM P L+P G G P G Q+ PPP+P
Sbjct: 358 FGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRP 406
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 176 (67.0 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 60/201 (29%), Positives = 98/201 (48%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 86 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 143
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 144 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 197
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK--NTEKYEIDGQVLDCSLAKPQA 374
G+I T ++ G R GF+ F +R A +A+K N +K + + A
Sbjct: 198 GRIITSRILVDQVTGGSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFAN-NP 255
Query: 375 DQKTSGGSNSQK-SALNPTYP 394
QKTS SQ + N YP
Sbjct: 256 SQKTSQALLSQLYQSPNRRYP 276
Score = 143 (55.4 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 43/170 (25%), Positives = 86/170 (50%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++ R SIGE+ ++++ K +G++ GY FV + + A +AI LN L
Sbjct: 95 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 154
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + ++ + ++ G +I+ ++ D Q
Sbjct: 155 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 212
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG FI + AE + + ++ K TV +A+ + ++S A
Sbjct: 213 GSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQKTSQA 262
Score = 61 (26.5 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 18/73 (24%), Positives = 30/73 (41%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 356 EKYEIDGQVLDCS 368
Y + +VL S
Sbjct: 387 NGYRLGDRVLQVS 399
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 143 (55.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 39/144 (27%), Positives = 79/144 (54%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++G IP + + DL+ + G++ E+ ++K K +G KG AF+T+ +E A +A
Sbjct: 8 KLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNA 67
Query: 181 LNSCE-LKG--KKIKCSAAQAKHR----LFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
L+ + L G + I+ A ++ R LF+G + + + D+RK G + ++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSEGRGDRKLFVGMLGKQLSDADVRKMFEPFG-SIEECTVL 126
Query: 234 KDPQNANQNRGFAFIEYYNHACAE 257
+ P A+ +G AF++Y ++A A+
Sbjct: 127 RGPDGAS--KGCAFVKYQSNAEAQ 148
Score = 88 (36.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++G + SD D+R + G + E +++G D G +KG AFV +++ A AI
Sbjct: 95 KLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPD-GASKGCAFVKYQSNAEAQAAISA 153
Query: 181 LN 182
L+
Sbjct: 154 LH 155
Score = 78 (32.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 16/78 (20%), Positives = 38/78 (48%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
+++ +LP++ T + ++F G + + + + +GFV F +SA A++
Sbjct: 369 IFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 428
Query: 356 EKYEIDGQVLDCSLAKPQ 373
++I + L L +P+
Sbjct: 429 NGFQIGMKRLKVQLKRPK 446
Score = 72 (30.4 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 22/84 (26%), Positives = 44/84 (52%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+FI ++P+ + + +M + G VIS ++ D + NQ++ F F+ + N A A+ + Q
Sbjct: 369 IFIYHLPQEFTDSEMLQMFLPFG-NVISAKVFVD-RATNQSKCFGFVSFDNPASAQAAIQ 426
Query: 262 KMSNPKFKLDDNAPTVSWADPRNA 285
M+ F++ V P++A
Sbjct: 427 AMNG--FQIGMKRLKVQLKRPKDA 448
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 167 (63.8 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 56/204 (27%), Positives = 103/204 (50%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
VY+GG+ S+ L G V + K + +G+ +GY FV F ++E A AI+ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 182 NSCELKGKKIKCSAAQAKHR-------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
N +L GK I+ + A A ++ +FIGN+ E + + G + + ++++
Sbjct: 75 NMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMR 134
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP-TVSWADPRNAESSA-ASQ 292
DP N ++G+AFI + + ++ + + M N ++ N P TVS+A ++++ S
Sbjct: 135 DPDTGN-SKGYAFINFASFDASDAAIEAM-NGQYLC--NRPITVSYAFKKDSKGERHGSA 190
Query: 293 VKALYVKNLPKDITQ-DRLKELFA 315
+ L P ++Q DR +LFA
Sbjct: 191 AERLLAAQNP--LSQADRPHQLFA 212
Score = 49 (22.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 17/40 (42%), Positives = 18/40 (45%)
Query: 427 GAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHN-P--PPQP 463
G P GM +PM P G G V PG N P PP P
Sbjct: 288 GMHPPGMPHMPMP-PTGPPGMVPPPPGPPGSNQPRAPPPP 326
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 173 (66.0 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 49/170 (28%), Positives = 81/170 (47%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + D+LR SIGEV ++++ K +G + GY FV + T + A +AI LN L
Sbjct: 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL 86
Query: 187 KGKKIKCSAAQAKHR------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ L+I +PR + D+ ++ G +I+ ++ D Q
Sbjct: 87 QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGR-IINSRVLVD-QTTG 144
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG AFI + + AE + + K TV +A N + A
Sbjct: 145 LSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVA 194
Score = 146 (56.5 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 44/171 (25%), Positives = 82/171 (47%)
Query: 193 CSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN 252
C + L + +P+N +D++R + IG V S +L++D + A + G+ F+ Y
Sbjct: 13 CRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGE-VESAKLIRD-KVAGHSLGYGFVNYVT 70
Query: 253 HACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKE 312
AE + ++ +L VS+A P SS + LY+ LP+ +TQ +++
Sbjct: 71 AKDAERAINTLNG--LRLQSKTIKVSYARP----SSEVIKDANLYISGLPRTMTQKDVED 124
Query: 313 LFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 362
+F+ G+I V+ G R F+ F +RS A +A+ + ++ G
Sbjct: 125 MFSRFGRIINSRVLVDQTTGLSRG-VAFIRFDKRSEAEEAITSFNGHKPPG 174
Score = 85 (35.0 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+ G+P + D+ G + R++ + +G ++G AF+ F + A +AI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 180 ELN 182
N
Sbjct: 166 SFN 168
Score = 79 (32.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 32/147 (21%), Positives = 58/147 (39%)
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP--KFKLDD-NAPTVSWAD 281
PG VK N NQN+ A + H+ A + + +F+ +S
Sbjct: 173 PGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHMSGLS 232
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
N +A+S +++ NL +D + L ++F G +T V + + +GFV
Sbjct: 233 GVNVPGNASSGW-CIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 291
Query: 342 FAERSSAMKALKNTEKYEIDGQVLDCS 368
A A+ + Y + ++L S
Sbjct: 292 MTNYEEAAMAIASLNGYRLGDKILQVS 318
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 179 (68.1 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 59/270 (21%), Positives = 122/270 (45%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y G + ++ L K + V VR+ + ++ + GYA++ F A +A+E
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAME 107
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN L + I+ + K +FI N+ + + + + G ++S +
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGT-ILSCK 166
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA----ES 287
+ D +++G+ F+++ A+ + K++ ++D V R E+
Sbjct: 167 VAMDV--TGRSKGYGFVQFEKEESAQAAIDKLNG--MLMNDKQVFVGHFIRRQERARDEN 222
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+ + +YVKNLPK+I +D L++ F G I+ V+ + G R +GFV+F +
Sbjct: 223 TPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRC-FGFVNFECTEA 281
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A A++ + VL A+ +++++
Sbjct: 282 AASAVEKMNGISLGDDVLYVGRAQKKSERE 311
Score = 161 (61.7 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 54/192 (28%), Positives = 93/192 (48%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+++ N+P+ GED++RK K G VIS +V Q+ N +R F F+ + A + +
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFG--VISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVE 287
Query: 262 KMSNPKFKLDDNAPTVSWADPRNAESSAA--------------SQVKALYVKNLPKDITQ 307
KM+ L D+ V A ++ SQ LY+KNL +
Sbjct: 288 KMNG--ISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDD 345
Query: 308 DRLKELFAHHGKIT--KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
++LKE+F+ +G +T KV++ P G R +GFV ++ A++AL I + L
Sbjct: 346 EKLKEMFSEYGNVTSSKVMLNPQ--GMSRG-FGFVAYSNPEEALRALSEMNGKMIGRKPL 402
Query: 366 DCSLAKPQADQK 377
+LA+ + D++
Sbjct: 403 YIALAQRKEDRR 414
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 161 (61.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 52/194 (26%), Positives = 94/194 (48%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+GG+ S+ L G V V + K + + +G+ FV F +E A AI+ L
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 182 NSCELKGKKIKCSAAQAKHR-------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
N +L GK IK + A A + +F+GN+ E + + G ++ + +
Sbjct: 75 NMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGV-ILQVPKIM 133
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES----SAA 290
++ ++GFAFI + + ++ + + M N +F L + A TVS+A R+++ +AA
Sbjct: 134 RDVDSGTSKGFAFINFASFEASDTALEAM-NGQF-LCNRAITVSYAFKRDSKGERHGTAA 191
Query: 291 SQVKALYVKNLPKD 304
++ A PKD
Sbjct: 192 ERMLAAQNPLFPKD 205
Score = 55 (24.4 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 425 GRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQP 463
GR P GM +P P R G PG+ PPP P
Sbjct: 305 GRTPGPPGMPGMPPPPPPSRFG----PPGMGGMPPPPPP 339
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 161 (61.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 52/194 (26%), Positives = 94/194 (48%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+GG+ S+ L G V V + K + + +G+ FV F +E A AI+ L
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 182 NSCELKGKKIKCSAAQAKHR-------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
N +L GK IK + A A + +F+GN+ E + + G ++ + +
Sbjct: 75 NMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGV-ILQVPKIM 133
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES----SAA 290
++ ++GFAFI + + ++ + + M N +F L + A TVS+A R+++ +AA
Sbjct: 134 RDVDSGTSKGFAFINFASFEASDTALEAM-NGQF-LCNRAITVSYAFKRDSKGERHGTAA 191
Query: 291 SQVKALYVKNLPKD 304
++ A PKD
Sbjct: 192 ERMLAAQNPLFPKD 205
Score = 55 (24.4 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 425 GRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQP 463
GR P GM +P P R G PG+ PPP P
Sbjct: 305 GRTPGPPGMPGMPPPPPPSRFG----PPGMGGMPPPPPP 339
>UNIPROTKB|E1C0G3 [details] [associations]
symbol:DND1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0060965 "negative
regulation of gene silencing by miRNA" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074366 GO:GO:0017091
GO:GO:0060965 EMBL:AADN02063753 IPI:IPI00581277
ProteinModelPortal:E1C0G3 Ensembl:ENSGALT00000009491 OMA:EEIMEEM
Uniprot:E1C0G3
Length = 208
Score = 155 (59.6 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 45/176 (25%), Positives = 80/176 (45%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP GSEVY+ +P D +D L +S+G++ E R+M SG +G+A+ + + A
Sbjct: 35 PPPGSEVYIAKLPRDLYEDTLIPLFQSVGQLYEFRLML-TFSGLNRGFAYAKYSDQHGAG 93
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+AI LN+ E++ G+ I + K L + +P ++ + + G++ + L
Sbjct: 94 KAIAALNNWEVQEGRAILVCRSFEKCELSVNGLPATLRRRELDAMLLEATEGLLGLTLHA 153
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
P Q + A + Y +H A +++ + L V W P E A
Sbjct: 154 SP-GRKQGK-VAVLTYSSHRAAAMAKKALVEGNVGLFKKKVKVEWLKPELKEQLQA 207
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 173 (66.0 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 49/170 (28%), Positives = 81/170 (47%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + D+LR SIGEV ++++ K +G + GY FV + T + A +AI LN L
Sbjct: 35 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL 94
Query: 187 KGKKIKCSAAQAKHR------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ L+I +PR + D+ ++ G +I+ ++ D Q
Sbjct: 95 QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGR-IINSRVLVD-QTTG 152
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG AFI + + AE + + K TV +A N + A
Sbjct: 153 LSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVA 202
Score = 144 (55.7 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 44/171 (25%), Positives = 82/171 (47%)
Query: 193 CSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN 252
C + L + +P+N +D++R + IG V S +L++D + A + G+ F+ Y
Sbjct: 21 CRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGE-VESAKLIRD-KVAGHSLGYGFVNYVT 78
Query: 253 HACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKE 312
AE + ++ +L VS+A P SS + LY+ LP+ +TQ +++
Sbjct: 79 AKDAERAINTLNG--LRLQSKTIKVSYARP----SSEVIKDANLYISGLPRTMTQKDVED 132
Query: 313 LFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 362
+F+ G+I V+ G R F+ F +RS A +A+ + ++ G
Sbjct: 133 MFSRFGRIINSRVLVDQTTGLSRG-VAFIRFDKRSEAEEAITSFNGHKPPG 182
Score = 85 (35.0 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+ G+P + D+ G + R++ + +G ++G AF+ F + A +AI
Sbjct: 114 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 173
Query: 180 ELN 182
N
Sbjct: 174 SFN 176
Score = 79 (32.9 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 32/147 (21%), Positives = 58/147 (39%)
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP--KFKLDD-NAPTVSWAD 281
PG VK N NQN+ A + H+ A + + +F+ +S
Sbjct: 181 PGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHMSGLS 240
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
N +A+S +++ NL +D + L ++F G +T V + + +GFV
Sbjct: 241 GVNVPGNASSGW-CIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 299
Query: 342 FAERSSAMKALKNTEKYEIDGQVLDCS 368
A A+ + Y + ++L S
Sbjct: 300 MTNYEEAAMAIASLNGYRLGDKILQVS 326
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 174 (66.3 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 59/201 (29%), Positives = 97/201 (48%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 106
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 107 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 160
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 374
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 161 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 218
Query: 375 DQKTSGGSNSQK-SALNPTYP 394
QKTS SQ + N YP
Sbjct: 219 SQKTSQALLSQLYQSPNRRYP 239
Score = 144 (55.7 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 43/170 (25%), Positives = 86/170 (50%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++ R SIGE+ ++++ K +G++ GY FV + + A +AI LN L
Sbjct: 58 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 117
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + ++ + ++ G +I+ ++ D Q
Sbjct: 118 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 175
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG FI + AE + + ++ K TV +A+ + ++S A
Sbjct: 176 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKTSQA 225
Score = 61 (26.5 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 18/73 (24%), Positives = 30/73 (41%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 356 EKYEIDGQVLDCS 368
Y + +VL S
Sbjct: 350 NGYRLGDRVLQVS 362
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 145 (56.1 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 33/94 (35%), Positives = 51/94 (54%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ D D+ L+ G V++M +SG++KG+ F
Sbjct: 145 KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGF 203
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V+F E A +A++E+N EL GK+I AQ K
Sbjct: 204 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 237
Score = 140 (54.3 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 38/143 (26%), Positives = 69/143 (48%)
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW---ADPRNAESSA-ASQVKA 295
N ++G+ F+ + AE + +KM+ L+D V R AE A A +
Sbjct: 103 NGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELGARAKEFTN 160
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
+Y+KN +D+ +RLK+LF G V + + G+ + +GFV F A KA+
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG-FGFVSFERHEDAQKAVDEM 219
Query: 356 EKYEIDGQVLDCSLAKPQADQKT 378
E++G+ + A+ + +++T
Sbjct: 220 NGKELNGKQIYVGRAQKKVERQT 242
Score = 119 (46.9 bits), Expect = 0.00056, P = 0.00056
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------KCSAAQ--AKHRLFIG 205
D +KGY FV F T+E A +AIE++N L +K+ K A+ A+ + F
Sbjct: 101 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTN 160
Query: 206 NVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+N+GED D ++ K GP +S++++ D + +++GF F+ + H A+ +
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVD 217
Query: 262 KMS 264
+M+
Sbjct: 218 EMN 220
Score = 111 (44.1 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 53/209 (25%), Positives = 98/209 (46%)
Query: 187 KGKKIKCSAAQAKHRLFIGNVPRNWGED-D---MRKAVTKIGPGVISIELVKDPQNANQN 242
K +K + + A+ + F +N+GED D ++ K GP +S++++ D + ++
Sbjct: 142 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA-LSVKVMTD--ESGKS 198
Query: 243 RGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP---RNAESSAA-SQVKA--- 295
+GF F+ + H A+ + +M N K +L+ V A R E Q+K
Sbjct: 199 KGFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 256
Query: 296 -------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
LYVKNL I +RL++ F+ G IT + + G+ + +GFV F+ A
Sbjct: 257 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM-MEGGRSKG-FGFVCFSSPEEA 314
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA+ + + L +LA+ + +++
Sbjct: 315 TKAVTEMNGRIVATKPLYVALAQRKEERQ 343
Score = 84 (34.6 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 18/78 (23%), Positives = 40/78 (51%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ 197
+N +KGK ++ +Q
Sbjct: 71 TMNFDVIKGKPVRIMWSQ 88
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 175 (66.7 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 61/226 (26%), Positives = 104/226 (46%)
Query: 171 KELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDD--MRKAVTKIGPGVI 228
K+ S+ EE E KK K + +F+G + +W DD ++K IG GVI
Sbjct: 139 KKRKSEDAEEEEDEESSNKKQKNEETEEPATIFVGRL--SWSIDDEWLKKEFEHIG-GVI 195
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT---VSWADPRNA 285
++ + + +++RG+ ++++ N + AE + Q+M + D P +S + P
Sbjct: 196 GARVIYE-RGTDRSRGYGYVDFENKSYAEKAIQEMQGKEI---DGRPINCDMSTSKPAGN 251
Query: 286 ESSA-------ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 338
A + L++ NL + +D + ELFA HG++ V IP ++ +G
Sbjct: 252 NDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFG 311
Query: 339 FVHFAERSSAMKALKNTEKYEIDGQV--LDCSLAKPQADQKTSGGS 382
+V F+ A KAL + ID + LD S +P D GGS
Sbjct: 312 YVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNNDGGR-GGS 356
Score = 130 (50.8 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 34/174 (19%), Positives = 66/174 (37%)
Query: 28 ESEERVDLDEDNDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGIDAQK 87
ESE +E D D +++K
Sbjct: 75 ESEAETKKEESKDSSSSSSDSSSDEEEEEEKEETKKEESKESSSSDSSSSSSSDS-ESEK 133
Query: 88 HYDGDEEMKV--AESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGE 145
D++ K AE ++D+E + + +++G + D+ L+ + IG
Sbjct: 134 EESNDKKRKSEDAEEEEDEESSNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGG 193
Query: 146 VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V R++ + + ++GY +V F K A +AI+E+ E+ G+ I C + +K
Sbjct: 194 VIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSK 247
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 178 (67.7 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 63/268 (23%), Positives = 123/268 (45%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L S G + +R+ + + + GYA V F A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ---AKHRLFIGNV-PRNWGEDDMRKAV--TKIGPG-VISIEL 232
+N +KGK ++ +Q + R +GNV +N + KA+ T G ++S ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKV 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS-WADPRNAESSAAS 291
V D N ++G F+ + AE + +KM+ L+D V + + E+ +
Sbjct: 131 VCDE---NGSKGHGFVHFETEEAAERAIEKMNG--MLLNDRKVFVGQFKSRKEREAELGT 185
Query: 292 QVKA---LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
+ K +Y+KN + L LF G++ V + + G+ + +GFV F A
Sbjct: 186 RTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKG-FGFVSFERHEDA 244
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQ 376
KA+ E++G+ + A+ + D+
Sbjct: 245 QKAVDEMNGKELNGKHIYVGPAQKKVDR 272
Score = 129 (50.5 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 33/106 (31%), Positives = 50/106 (47%)
Query: 94 EMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMK 153
+ KV K++ AEL + VY+ D L G+V V++M
Sbjct: 165 DRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMT 224
Query: 154 GKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
+ G++KG+ FV+F E A +A++E+N EL GK I AQ K
Sbjct: 225 D-EGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKK 269
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 172 (65.6 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 45/166 (27%), Positives = 85/166 (51%)
Query: 90 DGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEV 149
+G E ++ S +++ A++ + G ++++GG+ D S DL+ + GEV++
Sbjct: 34 NGAEGEQINASKGEEDAGCVADISSPLTEGVKMFVGGLSWDTSKKDLKDYFAKFGEVSDC 93
Query: 150 RIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--KCSAAQAKH---RLFI 204
I ++G ++G+ F+ F+ E + +E L G+ I K + A K ++F+
Sbjct: 94 TIKMDPNTGRSRGFGFILFKDAESVDKVLEHKEH-RLDGRLIDPKKAMAMKKDPIKKIFV 152
Query: 205 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
G + GED +R+ G + +IEL DP+ N+ RGF FI +
Sbjct: 153 GGLNPEAGEDQIREYFETFGE-IEAIELPMDPKT-NKRRGFVFITF 196
Score = 144 (55.7 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 42/182 (23%), Positives = 85/182 (46%)
Query: 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 260
++F+G + + + D++ K G V + DP N ++RGF FI + + AE
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGE-VSDCTIKMDP-NTGRSRGFGFILFKD---AESVD 119
Query: 261 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
+ + + + +LD DP+ A + +K ++V L + +D+++E F G+I
Sbjct: 120 KVLEHKEHRLDGRL-----IDPKKAMAMKKDPIKKIFVGGLNPEAGEDQIREYFETFGEI 174
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP-QADQKTS 379
+ +P +R + F+ F E K L+ + + + G + +A+P + Q+
Sbjct: 175 EAIELPMDPKTNKRRGFVFITFKEEDPVKKILEK-KFHNVSGSKCEIKIAQPKEVYQQQY 233
Query: 380 GG 381
GG
Sbjct: 234 GG 235
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 173 (66.0 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 49/170 (28%), Positives = 81/170 (47%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + D+LR SIGEV ++++ K +G + GY FV + T + A +AI LN L
Sbjct: 54 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL 113
Query: 187 KGKKIKCSAAQAKHR------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ L+I +PR + D+ ++ G +I+ ++ D Q
Sbjct: 114 QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGR-IINSRVLVD-QTTG 171
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG AFI + + AE + + K TV +A N + A
Sbjct: 172 LSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVA 221
Score = 146 (56.5 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 44/171 (25%), Positives = 82/171 (47%)
Query: 193 CSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN 252
C + L + +P+N +D++R + IG V S +L++D + A + G+ F+ Y
Sbjct: 40 CRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGE-VESAKLIRD-KVAGHSLGYGFVNYVT 97
Query: 253 HACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKE 312
AE + ++ +L VS+A P SS + LY+ LP+ +TQ +++
Sbjct: 98 AKDAERAINTLNG--LRLQSKTIKVSYARP----SSEVIKDANLYISGLPRTMTQKDVED 151
Query: 313 LFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 362
+F+ G+I V+ G R F+ F +RS A +A+ + ++ G
Sbjct: 152 MFSRFGRIINSRVLVDQTTGLSRG-VAFIRFDKRSEAEEAITSFNGHKPPG 201
Score = 85 (35.0 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+ G+P + D+ G + R++ + +G ++G AF+ F + A +AI
Sbjct: 133 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 192
Query: 180 ELN 182
N
Sbjct: 193 SFN 195
Score = 79 (32.9 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 32/147 (21%), Positives = 58/147 (39%)
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP--KFKLDD-NAPTVSWAD 281
PG VK N NQN+ A + H+ A + + +F+ +S
Sbjct: 200 PGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHMSGLS 259
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
N +A+S +++ NL +D + L ++F G +T V + + +GFV
Sbjct: 260 GVNVPGNASSGW-CIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 318
Query: 342 FAERSSAMKALKNTEKYEIDGQVLDCS 368
A A+ + Y + ++L S
Sbjct: 319 MTNYEEAAMAIASLNGYRLGDKILQVS 345
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 139 (54.0 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 37/149 (24%), Positives = 78/149 (52%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
P ++++G IP + + DL+ + G++ E+ ++K K +G KG AF+T+ +E A +
Sbjct: 4 PDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALK 63
Query: 177 AIEELNSCE-LKG--KKIKCSAAQAKHR-----LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A L+ + L G + I+ A ++ R LF+G + + ++D+R+ G +
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFETFG-NID 122
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAE 257
+++ P + +G AF+++ H A+
Sbjct: 123 ECTVLRGPDGTS--KGCAFVKFQTHTEAQ 149
Score = 118 (46.6 bits), Expect = 0.00049, P = 0.00049
Identities = 36/152 (23%), Positives = 67/152 (44%)
Query: 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 260
+LFIG +PRN E D++ + G + + ++KD + ++G AF+ Y A ++
Sbjct: 8 KLFIGQIPRNLDEKDLKPIFEQFGK-IYELTVIKD-KFTGMHKGCAFLTYCARESALKAQ 65
Query: 261 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
+ K N P + A+S + + + L+V L K T + ++ +F G I
Sbjct: 66 SALHEQKTLPGMNRPI----QVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFETFGNI 121
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
+ + G + FV F + A A+
Sbjct: 122 DECTVLRGPDGTSKG-CAFVKFQTHTEAQAAI 152
Score = 98 (39.6 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++G + +D+D+R ++ G + E +++G D G +KG AFV F+T A AI
Sbjct: 96 KLFVGMLGKQQTDEDVRRMFETFGNIDECTVLRGPD-GTSKGCAFVKFQTHTEAQAAINA 154
Query: 181 LN 182
L+
Sbjct: 155 LH 156
Score = 81 (33.6 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 25/133 (18%), Positives = 59/133 (44%)
Query: 243 RGFAFIEYYNHAC-AEYSRQKMSNPKFKLDDNAPTV-SWADPRNAESSAASQVKALYVKN 300
+ +A +++Y A A Y + +P F P + + P+ + + +++ +
Sbjct: 330 QAYAGMQHYTAAYPAAYG---LVSPAFT---QPPAILTQQPPQQQQQREGPEGCNIFIYH 383
Query: 301 LPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 360
LP++ T + ++F G + + + + +GFV F SA A+++ ++I
Sbjct: 384 LPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSMNGFQI 443
Query: 361 DGQVLDCSLAKPQ 373
+ L L +P+
Sbjct: 444 GMKRLKVQLKRPK 456
Score = 65 (27.9 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 20/84 (23%), Positives = 43/84 (51%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+FI ++P+ + + ++ + G VIS ++ D + NQ++ F F+ + N A+ + Q
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFG-NVISAKVFVD-RATNQSKCFGFVSFDNPGSAQAAIQ 436
Query: 262 KMSNPKFKLDDNAPTVSWADPRNA 285
M+ F++ V P++A
Sbjct: 437 SMNG--FQIGMKRLKVQLKRPKDA 458
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 170 (64.9 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 47/176 (26%), Positives = 88/176 (50%)
Query: 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 260
+LF+GN+P + D A+ G + I V ++ +Q+RGF F+ AE +
Sbjct: 114 KLFVGNLP--YDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAV 171
Query: 261 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVK----ALYVKNLPKDITQDRLKELFAH 316
+K ++ F+++ TV+ A PR + +V +YV NLP D+ RL+ LF+
Sbjct: 172 EKFNS--FEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSE 229
Query: 317 HGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
HGK+ V+ + G+ R +GFV + + A+ + ++G+ + ++A+
Sbjct: 230 HGKVVDARVVSDRETGRSRG-FGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAE 284
Score = 162 (62.1 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 40/153 (26%), Positives = 78/153 (50%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP +++++G +P+D L + G V ++ +D+ +++G+ FVT T E A
Sbjct: 109 PPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAE 168
Query: 176 QAIEELNSCELKGKKIKCSAA--------------QAKHRLFIGNVPRNWGEDDMR--KA 219
+A+E+ NS E+ G+++ + A A R+++GN+P W D R +
Sbjct: 169 KAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLP--WDVDSGRLERL 226
Query: 220 VTKIGPGVISIELVKDPQNANQNRGFAFIEYYN 252
++ G V+ +V D + ++RGF F++ N
Sbjct: 227 FSEHGK-VVDARVVSD-RETGRSRGFGFVQMSN 257
Score = 114 (45.2 bits), Expect = 0.00059, P = 0.00059
Identities = 21/80 (26%), Positives = 42/80 (52%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G +P D L G+V + R++ +++G ++G+ FV + + AI L
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 182 NSCELKGKKIKCSAAQAKHR 201
+ L+G+ IK + A+ + R
Sbjct: 269 DGQNLEGRAIKVNVAEERTR 288
>MGI|MGI:1926034 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
Length = 465
Score = 140 (54.3 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 38/148 (25%), Positives = 75/148 (50%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTF--RTKELA 174
P ++++G IP + DL+ + G + E+ ++K K +G KG AF+T+ R L
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
Query: 175 SQ-AIEELNSCELKGKKIKCSAAQAKHR----LFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
+Q A+ E + + I+ A ++ R LF+G + + ++D+RK G +
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDE 122
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAE 257
+++ P + +G AF+++ HA A+
Sbjct: 123 CTVLRGPDGTS--KGCAFVKFQTHAEAQ 148
Score = 98 (39.6 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++G + +D+D+R + G + E +++G D G +KG AFV F+T A AI
Sbjct: 95 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 153
Query: 181 LNS 183
L+S
Sbjct: 154 LHS 156
Score = 78 (32.5 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 16/78 (20%), Positives = 38/78 (48%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
+++ +LP++ T + ++F G + + + + +GFV F +SA A++
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 356 EKYEIDGQVLDCSLAKPQ 373
++I + L L +P+
Sbjct: 442 NGFQIGMKRLKVQLKRPK 459
Score = 67 (28.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 21/84 (25%), Positives = 44/84 (52%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+FI ++P+ + + ++ + G VIS ++ D + NQ++ F F+ + N A A+ + Q
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGH-VISAKVFVD-RATNQSKCFGFVSFDNPASAQAAIQ 439
Query: 262 KMSNPKFKLDDNAPTVSWADPRNA 285
M+ F++ V P++A
Sbjct: 440 AMNG--FQIGMKRLKVQLKRPKDA 461
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 138 (53.6 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 38/149 (25%), Positives = 75/149 (50%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTF--RTKELA 174
P ++++G IP + DL+ + G + E+ ++K K +G KG AF+T+ R L
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
Query: 175 SQ-AIEELNSCELKGKKIKCSAAQAKHR-----LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
+Q A+ E + + I+ A ++ R LF+G + + ++D+RK G +
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-ID 122
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAE 257
+++ P + +G AF+++ HA A+
Sbjct: 123 ECTVLRGPDGTS--KGCAFVKFQTHAEAQ 149
Score = 98 (39.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++G + +D+D+R + G + E +++G D G +KG AFV F+T A AI
Sbjct: 96 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 154
Query: 181 LNS 183
L+S
Sbjct: 155 LHS 157
Score = 78 (32.5 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 16/78 (20%), Positives = 38/78 (48%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
+++ +LP++ T + ++F G + + + + +GFV F +SA A++
Sbjct: 332 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 391
Query: 356 EKYEIDGQVLDCSLAKPQ 373
++I + L L +P+
Sbjct: 392 NGFQIGMKRLKVQLKRPK 409
Score = 67 (28.6 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 21/84 (25%), Positives = 44/84 (52%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+FI ++P+ + + ++ + G VIS ++ D + NQ++ F F+ + N A A+ + Q
Sbjct: 332 IFIYHLPQEFTDSEILQMFVPFGH-VISAKVFVD-RATNQSKCFGFVSFDNPASAQAAIQ 389
Query: 262 KMSNPKFKLDDNAPTVSWADPRNA 285
M+ F++ V P++A
Sbjct: 390 AMNG--FQIGMKRLKVQLKRPKDA 411
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 170 (64.9 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 42 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 99
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 100 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 153
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 374
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 154 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 211
Query: 375 DQKTSGGSNSQK-SALNPTYP 394
QK+S SQ + N YP
Sbjct: 212 SQKSSQALLSQLYQSPNRRYP 232
Score = 147 (56.8 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 44/170 (25%), Positives = 86/170 (50%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++ R SIGE+ ++++ K +G++ GY FV + + A +AI LN L
Sbjct: 51 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 110
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + ++ + ++ G +I+ ++ D Q
Sbjct: 111 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 168
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG FI + AE + + ++ K TV +A+ + +SS A
Sbjct: 169 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 218
Score = 62 (26.9 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 356 EKYEIDGQVLDCSLAKPQA 374
Y + +VL S +A
Sbjct: 330 NGYRLGDRVLQVSFKTNKA 348
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 171 (65.3 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 47/157 (29%), Positives = 82/157 (52%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +++++ IG + S +LV+D Q+ G+ F+ Y + AE
Sbjct: 64 SKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRDKITEGQSLGYGFVNYIDPKDAE 122
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 123 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 176
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
G+I T ++ G R GF+ F +R A +A+K
Sbjct: 177 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 212
Score = 132 (51.5 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 38/148 (25%), Positives = 76/148 (51%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGK-DSGEAKGYAFVTFRTKELASQAIEELNSCE 185
+P + + ++L+ SIGE+ ++++ K G++ GY FV + + A +AI LN
Sbjct: 73 LPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLR 132
Query: 186 LKGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
L+ K IK S A+ A R L++ +P+ + ++ + ++ G +I+ ++ D Q
Sbjct: 133 LQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVT 190
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPK 267
+RG FI + AE + + ++ K
Sbjct: 191 GVSRGVGFIRFDKRIEAEEAIKGLNGQK 218
Score = 65 (27.9 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL D + L ++F G +T V + + +GFV A A+ +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 356 EKYEIDGQVLDCS 368
Y + +VL S
Sbjct: 368 NGYRLGDRVLQVS 380
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 169 (64.5 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 50/175 (28%), Positives = 86/175 (49%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++LR SIGEV ++++ K +G + GY FV + T + A +AI LN L
Sbjct: 27 LPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRL 86
Query: 187 KGKKIKCSAAQAKHR------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ L+I +PR + D+ ++ G +I+ ++ D Q
Sbjct: 87 QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGR-IINSRVLVD-QTTG 144
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA-DP-RNAESSAASQV 293
+RG AFI + + AE + + K TV +A +P +N + SQ+
Sbjct: 145 LSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNMALLSQL 199
Score = 140 (54.3 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 43/171 (25%), Positives = 82/171 (47%)
Query: 193 CSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN 252
C + L + +P+N ++++R + IG V S +L++D + A + G+ F+ Y
Sbjct: 13 CRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGE-VESAKLIRD-KVAGHSLGYGFVNYVT 70
Query: 253 HACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKE 312
AE + ++ +L VS+A P SS + LY+ LP+ +TQ +++
Sbjct: 71 AKDAERAISTLNG--LRLQSKTIKVSYARP----SSEVIKDANLYISGLPRTMTQKDVED 124
Query: 313 LFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 362
+F+ G+I V+ G R F+ F +RS A +A+ + ++ G
Sbjct: 125 MFSRFGRIINSRVLVDQTTGLSRG-VAFIRFDKRSEAEEAITSFNGHKPPG 174
Score = 85 (35.0 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+ G+P + D+ G + R++ + +G ++G AF+ F + A +AI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 180 ELN 182
N
Sbjct: 166 SFN 168
Score = 80 (33.2 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 32/147 (21%), Positives = 58/147 (39%)
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP--KFKLDD-NAPTVSWAD 281
PG VK N NQN+ A + H+ A + + +F+ +S
Sbjct: 173 PGSSEPITVKFAANPNQNKNMALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHMSGIS 232
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
N +A+S +++ NL +D + L ++F G +T V + + +GFV
Sbjct: 233 GVNVPGNASSGW-CIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 291
Query: 342 FAERSSAMKALKNTEKYEIDGQVLDCS 368
A A+ + Y + ++L S
Sbjct: 292 MTNYEEAAMAIASLNGYRLGDKILQVS 318
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 169 (64.5 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 50/175 (28%), Positives = 86/175 (49%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++LR SIGEV ++++ K +G + GY FV + T + A +AI LN L
Sbjct: 27 LPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRL 86
Query: 187 KGKKIKCSAAQAKHR------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ L+I +PR + D+ ++ G +I+ ++ D Q
Sbjct: 87 QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGR-IINSRVLVD-QTTG 144
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA-DP-RNAESSAASQV 293
+RG AFI + + AE + + K TV +A +P +N + SQ+
Sbjct: 145 LSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNMALLSQL 199
Score = 140 (54.3 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 43/171 (25%), Positives = 82/171 (47%)
Query: 193 CSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN 252
C + L + +P+N ++++R + IG V S +L++D + A + G+ F+ Y
Sbjct: 13 CRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGE-VESAKLIRD-KVAGHSLGYGFVNYVT 70
Query: 253 HACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKE 312
AE + ++ +L VS+A P SS + LY+ LP+ +TQ +++
Sbjct: 71 AKDAERAISTLNG--LRLQSKTIKVSYARP----SSEVIKDANLYISGLPRTMTQKDVED 124
Query: 313 LFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 362
+F+ G+I V+ G R F+ F +RS A +A+ + ++ G
Sbjct: 125 MFSRFGRIINSRVLVDQTTGLSRG-VAFIRFDKRSEAEEAITSFNGHKPPG 174
Score = 85 (35.0 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+ G+P + D+ G + R++ + +G ++G AF+ F + A +AI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 180 ELN 182
N
Sbjct: 166 SFN 168
Score = 80 (33.2 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 32/147 (21%), Positives = 58/147 (39%)
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP--KFKLDD-NAPTVSWAD 281
PG VK N NQN+ A + H+ A + + +F+ +S
Sbjct: 173 PGSSEPITVKFAANPNQNKNMALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHMSGIS 232
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
N +A+S +++ NL +D + L ++F G +T V + + +GFV
Sbjct: 233 GVNVPGNASSGW-CIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 291
Query: 342 FAERSSAMKALKNTEKYEIDGQVLDCS 368
A A+ + Y + ++L S
Sbjct: 292 MTNYEEAAMAIASLNGYRLGDKILQVS 318
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 167 (63.8 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 52/216 (24%), Positives = 98/216 (45%)
Query: 175 SQAIEELNSCELKGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
S A + N +G +I S + ++F+G + + + D++ TK G V+ +
Sbjct: 44 SAAPQAGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIK 102
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQV 293
DP N ++RGF FI + + E + + + +LD DP+ A + V
Sbjct: 103 MDP-NTGRSRGFGFILFKDATSVE---KVLDQKEHRLDGRV-----IDPKKAMAMKKDPV 153
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K ++V L + T+++++E F G+I + +P +R + F+ F E K L+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 213
Query: 354 NTEKYEIDGQVLDCSLAKP----QADQKTSGGSNSQ 385
+ + I G + +A+P Q Q SGG ++
Sbjct: 214 K-KFHTISGSKCEIKVAQPKEVYQQQQYGSGGRGNR 248
Score = 144 (55.7 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 36/135 (26%), Positives = 71/135 (52%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++GG+ D S DL+ + GEV + I ++G ++G+ F+ F+ + +++
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQ 130
Query: 181 LNSCELKGKKI--KCSAAQAKH---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L G+ I K + A K ++F+G + E+ +R+ + G + +IEL D
Sbjct: 131 KEH-RLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIELPMD 188
Query: 236 PQNANQNRGFAFIEY 250
P++ N+ RGF FI +
Sbjct: 189 PKS-NKRRGFVFITF 202
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 170 (64.9 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 101
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 102 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 155
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 374
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 156 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 213
Query: 375 DQKTSGGSNSQK-SALNPTYP 394
QK+S SQ + N YP
Sbjct: 214 SQKSSQALLSQLYQSPNRRYP 234
Score = 147 (56.8 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 44/170 (25%), Positives = 86/170 (50%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++ R SIGE+ ++++ K +G++ GY FV + + A +AI LN L
Sbjct: 53 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 112
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + ++ + ++ G +I+ ++ D Q
Sbjct: 113 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 170
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG FI + AE + + ++ K TV +A+ + +SS A
Sbjct: 171 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 220
Score = 62 (26.9 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 356 EKYEIDGQVLDCSLAKPQA 374
Y + +VL S +A
Sbjct: 345 NGYRLGDRVLQVSFKTNKA 363
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 170 (64.9 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 101
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 102 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 155
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 374
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 156 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 213
Query: 375 DQKTSGGSNSQK-SALNPTYP 394
QK+S SQ + N YP
Sbjct: 214 SQKSSQALLSQLYQSPNRRYP 234
Score = 147 (56.8 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 44/170 (25%), Positives = 86/170 (50%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++ R SIGE+ ++++ K +G++ GY FV + + A +AI LN L
Sbjct: 53 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 112
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + ++ + ++ G +I+ ++ D Q
Sbjct: 113 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 170
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG FI + AE + + ++ K TV +A+ + +SS A
Sbjct: 171 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 220
Score = 62 (26.9 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 356 EKYEIDGQVLDCSLAKPQA 374
Y + +VL S +A
Sbjct: 345 NGYRLGDRVLQVSFKTNKA 363
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 170 (64.9 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 106
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 107 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 160
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 374
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 161 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 218
Query: 375 DQKTSGGSNSQK-SALNPTYP 394
QK+S SQ + N YP
Sbjct: 219 SQKSSQALLSQLYQSPNRRYP 239
Score = 147 (56.8 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 44/170 (25%), Positives = 86/170 (50%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++ R SIGE+ ++++ K +G++ GY FV + + A +AI LN L
Sbjct: 58 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 117
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + ++ + ++ G +I+ ++ D Q
Sbjct: 118 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 175
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG FI + AE + + ++ K TV +A+ + +SS A
Sbjct: 176 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 225
Score = 62 (26.9 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 356 EKYEIDGQVLDCSLAKPQA 374
Y + +VL S +A
Sbjct: 350 NGYRLGDRVLQVSFKTNKA 368
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 170 (64.9 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 37 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 94
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 95 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 374
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 149 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 206
Query: 375 DQKTSGGSNSQK-SALNPTYP 394
QK+S SQ + N YP
Sbjct: 207 SQKSSQALLSQLYQSPNRRYP 227
Score = 147 (56.8 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 44/170 (25%), Positives = 86/170 (50%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++ R SIGE+ ++++ K +G++ GY FV + + A +AI LN L
Sbjct: 46 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + ++ + ++ G +I+ ++ D Q
Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 163
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG FI + AE + + ++ K TV +A+ + +SS A
Sbjct: 164 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 213
Score = 62 (26.9 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 356 EKYEIDGQVLDCSLAKPQA 374
Y + +VL S +A
Sbjct: 352 NGYRLGDRVLQVSFKTNKA 370
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 170 (64.9 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 37 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 94
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 95 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 374
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 149 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 206
Query: 375 DQKTSGGSNSQK-SALNPTYP 394
QK+S SQ + N YP
Sbjct: 207 SQKSSQALLSQLYQSPNRRYP 227
Score = 147 (56.8 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 44/170 (25%), Positives = 86/170 (50%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++ R SIGE+ ++++ K +G++ GY FV + + A +AI LN L
Sbjct: 46 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + ++ + ++ G +I+ ++ D Q
Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 163
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG FI + AE + + ++ K TV +A+ + +SS A
Sbjct: 164 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 213
Score = 62 (26.9 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 356 EKYEIDGQVLDCSLAKPQA 374
Y + +VL S +A
Sbjct: 352 NGYRLGDRVLQVSFKTNKA 370
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 139 (54.0 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 37/149 (24%), Positives = 78/149 (52%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
P ++++G IP + + DL+ + G++ E+ ++K K +G KG AF+T+ +E A +
Sbjct: 4 PDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALK 63
Query: 177 AIEELNSCE-LKG--KKIKCSAAQAKHR-----LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A L+ + L G + I+ A ++ R LF+G + + ++D+R+ G +
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFEPFG-NID 122
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAE 257
+++ P + +G AF+++ H A+
Sbjct: 123 ECTVLRGPDGTS--KGCAFVKFQTHTEAQ 149
Score = 118 (46.6 bits), Expect = 0.00049, P = 0.00049
Identities = 36/152 (23%), Positives = 67/152 (44%)
Query: 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 260
+LFIG +PRN E D++ + G + + ++KD + ++G AF+ Y A ++
Sbjct: 8 KLFIGQIPRNLDEKDLKPIFEQFGK-IYELTVIKD-KFTGMHKGCAFLTYCARESALKAQ 65
Query: 261 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
+ K N P + A+S + + + L+V L K T + ++ +F G I
Sbjct: 66 SALHEQKTLPGMNRPI----QVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFEPFGNI 121
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
+ + G + FV F + A A+
Sbjct: 122 DECTVLRGPDGTSKG-CAFVKFQTHTEAQAAI 152
Score = 96 (38.9 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++G + +D+D+R + G + E +++G D G +KG AFV F+T A AI
Sbjct: 96 KLFVGMLGKQQTDEDVRRMFEPFGNIDECTVLRGPD-GTSKGCAFVKFQTHTEAQAAINA 154
Query: 181 LN 182
L+
Sbjct: 155 LH 156
Score = 77 (32.2 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 16/78 (20%), Positives = 37/78 (47%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
+++ +LP++ T + ++F G + + + + +GFV F SA A++
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAM 438
Query: 356 EKYEIDGQVLDCSLAKPQ 373
++I + L L +P+
Sbjct: 439 NGFQIGMKRLKVQLKRPK 456
Score = 64 (27.6 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 20/84 (23%), Positives = 43/84 (51%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+FI ++P+ + + ++ + G VIS ++ D + NQ++ F F+ + N A+ + Q
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFG-NVISAKVFVD-RATNQSKCFGFVSFDNPGSAQAAIQ 436
Query: 262 KMSNPKFKLDDNAPTVSWADPRNA 285
M+ F++ V P++A
Sbjct: 437 AMNG--FQIGMKRLKVQLKRPKDA 458
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 170 (64.9 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 101
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 102 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 155
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 374
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 156 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 213
Query: 375 DQKTSGGSNSQK-SALNPTYP 394
QK+S SQ + N YP
Sbjct: 214 SQKSSQALLSQLYQSPNRRYP 234
Score = 147 (56.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 44/170 (25%), Positives = 86/170 (50%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++ R SIGE+ ++++ K +G++ GY FV + + A +AI LN L
Sbjct: 53 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 112
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + ++ + ++ G +I+ ++ D Q
Sbjct: 113 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 170
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG FI + AE + + ++ K TV +A+ + +SS A
Sbjct: 171 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 220
Score = 62 (26.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 356 EKYEIDGQVLDCSLAKPQA 374
Y + +VL S +A
Sbjct: 359 NGYRLGDRVLQVSFKTNKA 377
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 170 (64.9 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 101
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 102 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 155
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 374
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 156 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 213
Query: 375 DQKTSGGSNSQK-SALNPTYP 394
QK+S SQ + N YP
Sbjct: 214 SQKSSQALLSQLYQSPNRRYP 234
Score = 147 (56.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 44/170 (25%), Positives = 86/170 (50%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++ R SIGE+ ++++ K +G++ GY FV + + A +AI LN L
Sbjct: 53 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 112
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + ++ + ++ G +I+ ++ D Q
Sbjct: 113 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 170
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG FI + AE + + ++ K TV +A+ + +SS A
Sbjct: 171 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 220
Score = 62 (26.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 356 EKYEIDGQVLDCSLAKPQA 374
Y + +VL S +A
Sbjct: 359 NGYRLGDRVLQVSFKTNKA 377
>UNIPROTKB|Q08E07 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
"Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
Length = 461
Score = 138 (53.6 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 38/149 (25%), Positives = 75/149 (50%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTF--RTKELA 174
P ++++G IP + DL+ + G + E+ ++K K +G KG AF+T+ R L
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
Query: 175 SQ-AIEELNSCELKGKKIKCSAAQAKHR-----LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
+Q A+ E + + I+ A ++ R LF+G + + ++D+RK G +
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-ID 122
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAE 257
+++ P + +G AF+++ HA A+
Sbjct: 123 ECTVLRGPDGTS--KGCAFVKFQTHAEAQ 149
Score = 98 (39.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++G + +D+D+R + G + E +++G D G +KG AFV F+T A AI
Sbjct: 96 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 154
Query: 181 LNS 183
L+S
Sbjct: 155 LHS 157
Score = 78 (32.5 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 16/78 (20%), Positives = 38/78 (48%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
+++ +LP++ T + ++F G + + + + +GFV F +SA A++
Sbjct: 378 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 437
Query: 356 EKYEIDGQVLDCSLAKPQ 373
++I + L L +P+
Sbjct: 438 NGFQIGMKRLKVQLKRPK 455
Score = 67 (28.6 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 21/84 (25%), Positives = 44/84 (52%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+FI ++P+ + + ++ + G VIS ++ D + NQ++ F F+ + N A A+ + Q
Sbjct: 378 IFIYHLPQEFTDSEILQMFVPFGH-VISAKVFVD-RATNQSKCFGFVSFDNPASAQAAIQ 435
Query: 262 KMSNPKFKLDDNAPTVSWADPRNA 285
M+ F++ V P++A
Sbjct: 436 AMNG--FQIGMKRLKVQLKRPKDA 457
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 170 (64.9 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 60 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 117
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 118 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 171
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 374
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 172 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 229
Query: 375 DQKTSGGSNSQK-SALNPTYP 394
QK+S SQ + N YP
Sbjct: 230 SQKSSQALLSQLYQSPNRRYP 250
Score = 147 (56.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 44/170 (25%), Positives = 86/170 (50%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++ R SIGE+ ++++ K +G++ GY FV + + A +AI LN L
Sbjct: 69 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 128
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + ++ + ++ G +I+ ++ D Q
Sbjct: 129 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 186
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG FI + AE + + ++ K TV +A+ + +SS A
Sbjct: 187 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 236
Score = 62 (26.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 356 EKYEIDGQVLDCSLAKPQA 374
Y + +VL S +A
Sbjct: 361 NGYRLGDRVLQVSFKTNKA 379
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 170 (64.9 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 48 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 105
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 106 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 159
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 374
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 160 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 217
Query: 375 DQKTSGGSNSQK-SALNPTYP 394
QK+S SQ + N YP
Sbjct: 218 SQKSSQALLSQLYQSPNRRYP 238
Score = 147 (56.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 44/170 (25%), Positives = 86/170 (50%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++ R SIGE+ ++++ K +G++ GY FV + + A +AI LN L
Sbjct: 57 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 116
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + ++ + ++ G +I+ ++ D Q
Sbjct: 117 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 174
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG FI + AE + + ++ K TV +A+ + +SS A
Sbjct: 175 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 224
Score = 62 (26.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 356 EKYEIDGQVLDCSLAKPQA 374
Y + +VL S +A
Sbjct: 363 NGYRLGDRVLQVSFKTNKA 381
>UNIPROTKB|D6RF41 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:28401
EMBL:AC009567 IPI:IPI00965528 ProteinModelPortal:D6RF41 SMR:D6RF41
Ensembl:ENST00000512640 ArrayExpress:D6RF41 Bgee:D6RF41
Uniprot:D6RF41
Length = 133
Score = 150 (57.9 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 35/77 (45%), Positives = 49/77 (63%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQ 115
Query: 176 QAIEELNSCELK-GKKI 191
AI LN+ E++ GK I
Sbjct: 116 LAIRILNNYEIRPGKFI 132
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 170 (64.9 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 106
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 107 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 160
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 374
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 161 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 218
Query: 375 DQKTSGGSNSQK-SALNPTYP 394
QK+S SQ + N YP
Sbjct: 219 SQKSSQALLSQLYQSPNRRYP 239
Score = 147 (56.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 44/170 (25%), Positives = 86/170 (50%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++ R SIGE+ ++++ K +G++ GY FV + + A +AI LN L
Sbjct: 58 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 117
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + ++ + ++ G +I+ ++ D Q
Sbjct: 118 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 175
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG FI + AE + + ++ K TV +A+ + +SS A
Sbjct: 176 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 225
Score = 62 (26.9 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 356 EKYEIDGQVLDCSLAKPQA 374
Y + +VL S +A
Sbjct: 364 NGYRLGDRVLQVSFKTNKA 382
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 170 (64.9 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +++ R IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 106
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 107 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 160
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 374
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 161 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN-NP 218
Query: 375 DQKTSGGSNSQK-SALNPTYP 394
QK+S SQ + N YP
Sbjct: 219 SQKSSQALLSQLYQSPNRRYP 239
Score = 147 (56.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 44/170 (25%), Positives = 86/170 (50%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++ R SIGE+ ++++ K +G++ GY FV + + A +AI LN L
Sbjct: 58 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 117
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + ++ + ++ G +I+ ++ D Q
Sbjct: 118 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 175
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG FI + AE + + ++ K TV +A+ + +SS A
Sbjct: 176 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQA 225
Score = 62 (26.9 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 19/79 (24%), Positives = 32/79 (40%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL D + L +LF G + V + + +GFV A A+ +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 356 EKYEIDGQVLDCSLAKPQA 374
Y + +VL S +A
Sbjct: 364 NGYRLGDRVLQVSFKTNKA 382
>UNIPROTKB|Q5SZQ8 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
Length = 465
Score = 138 (53.6 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 38/149 (25%), Positives = 75/149 (50%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTF--RTKELA 174
P ++++G IP + DL+ + G + E+ ++K K +G KG AF+T+ R L
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
Query: 175 SQ-AIEELNSCELKGKKIKCSAAQAKHR-----LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
+Q A+ E + + I+ A ++ R LF+G + + ++D+RK G +
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-ID 122
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAE 257
+++ P + +G AF+++ HA A+
Sbjct: 123 ECTVLRGPDGTS--KGCAFVKFQTHAEAQ 149
Score = 98 (39.6 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++G + +D+D+R + G + E +++G D G +KG AFV F+T A AI
Sbjct: 96 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 154
Query: 181 LNS 183
L+S
Sbjct: 155 LHS 157
Score = 78 (32.5 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 16/78 (20%), Positives = 38/78 (48%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
+++ +LP++ T + ++F G + + + + +GFV F +SA A++
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 356 EKYEIDGQVLDCSLAKPQ 373
++I + L L +P+
Sbjct: 442 NGFQIGMKRLKVQLKRPK 459
Score = 67 (28.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 21/84 (25%), Positives = 44/84 (52%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+FI ++P+ + + ++ + G VIS ++ D + NQ++ F F+ + N A A+ + Q
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGH-VISAKVFVD-RATNQSKCFGFVSFDNPASAQAAIQ 439
Query: 262 KMSNPKFKLDDNAPTVSWADPRNA 285
M+ F++ V P++A
Sbjct: 440 AMNG--FQIGMKRLKVQLKRPKDA 461
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 167 (63.8 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 56/204 (27%), Positives = 103/204 (50%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
VY+GG+ S+ L G V + K + +G+ +GY FV F ++E A AI+ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 182 NSCELKGKKIKCSAAQAKHR-------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
N +L GK I+ + A A ++ +FIGN+ E + + G + + ++++
Sbjct: 75 NMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMR 134
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP-TVSWADPRNAESSA-ASQ 292
DP N ++G+AFI + + ++ + + M N ++ N P TVS+A ++++ S
Sbjct: 135 DPDTGN-SKGYAFINFASFDASDAAIEAM-NGQYLC--NRPITVSYAFKKDSKGERHGSA 190
Query: 293 VKALYVKNLPKDITQ-DRLKELFA 315
+ L P ++Q DR +LFA
Sbjct: 191 AERLLAAQNP--LSQADRPHQLFA 212
Score = 44 (20.5 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 427 GAAP-GGMAMLPMLLPDGRI---GYVLQQ-----PGVQQHNPPP 461
GAAP GG P P G + G Q PG+ QH+P P
Sbjct: 278 GAAPTGGHPPHPHAFPPGGMHHPGMPPMQVHHGPPGMGQHHPGP 321
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 159 (61.0 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 46/157 (29%), Positives = 82/157 (52%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +D+ + IG + S +LV+D + Q+ G+ F+ Y + A+
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGD-IESCKLVRD-KITGQSLGYGFVNYSDPNDAD 94
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ KL VS+A P SSA+ + LYV LPK ++Q +++LF+ +
Sbjct: 95 KAINTLNG--LKLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMSQKEMEQLFSQY 148
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
G+I T ++ G R GF+ F +R A +A+K
Sbjct: 149 GRIITSRILLDQATGVSRG-VGFIRFDKRIEAEEAIK 184
Score = 147 (56.8 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 44/171 (25%), Positives = 87/171 (50%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + D+ + SIG++ ++++ K +G++ GY FV + A +AI LN +L
Sbjct: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKL 105
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + +M + ++ G +I+ ++ D Q
Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGR-IITSRILLD-QATG 163
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP-TVSWADPRNAESSAA 290
+RG FI + AE + + ++ K L P TV +A+ + ++ A
Sbjct: 164 VSRGVGFIRFDKRIEAEEAIKGLNGQK-PLGAAEPITVKFANNPSQKTGQA 213
Score = 64 (27.6 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 20/80 (25%), Positives = 33/80 (41%)
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
AA ++V NL + + L +LF G +T V + + +GFV A
Sbjct: 279 AAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEA 338
Query: 349 MKALKNTEKYEIDGQVLDCS 368
A+ + Y + +VL S
Sbjct: 339 AMAIASLNGYRLGERVLQVS 358
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 159 (61.0 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 46/157 (29%), Positives = 82/157 (52%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +D+ + IG + S +LV+D + Q+ G+ F+ Y + A+
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGD-IESCKLVRD-KITGQSLGYGFVNYSDPNDAD 94
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ KL VS+A P SSA+ + LYV LPK ++Q +++LF+ +
Sbjct: 95 KAINTLNG--LKLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMSQKEMEQLFSQY 148
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
G+I T ++ G R GF+ F +R A +A+K
Sbjct: 149 GRIITSRILLDQATGVSRG-VGFIRFDKRIEAEEAIK 184
Score = 147 (56.8 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 44/171 (25%), Positives = 87/171 (50%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + D+ + SIG++ ++++ K +G++ GY FV + A +AI LN +L
Sbjct: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKL 105
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + +M + ++ G +I+ ++ D Q
Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGR-IITSRILLD-QATG 163
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP-TVSWADPRNAESSAA 290
+RG FI + AE + + ++ K L P TV +A+ + ++ A
Sbjct: 164 VSRGVGFIRFDKRIEAEEAIKGLNGQK-PLGAAEPITVKFANNPSQKTGQA 213
Score = 64 (27.6 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 20/80 (25%), Positives = 33/80 (41%)
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
AA ++V NL + + L +LF G +T V + + +GFV A
Sbjct: 279 AAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEA 338
Query: 349 MKALKNTEKYEIDGQVLDCS 368
A+ + Y + +VL S
Sbjct: 339 AMAIASLNGYRLGERVLQVS 358
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 174 (66.3 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 62/256 (24%), Positives = 123/256 (48%)
Query: 132 SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191
++D+L+ + + E+R++ +D G++KG A++ F+++ A + +EE E+ G+ +
Sbjct: 407 TEDELKEVFE---DAMEIRLVS-QD-GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 461
Query: 192 KC--SAAQAKHRLFIGNVPRNW-GED------DMRKAVTK--IGPGVISIELVKDPQNAN 240
+ + + + G W GE ++ + TK + +K PQN +
Sbjct: 462 SLYYTGEKGQRQERTGKTS-TWSGESKTLVLSNLSYSATKETLEEVFEKATFIKVPQNPH 520
Query: 241 -QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVK 299
+ +G+AFIE+ A E +++ +++ K++ T+ +S + K L+VK
Sbjct: 521 GKPKGYAFIEF---ASFEDAKEALNSCN-KMEIEGRTIRLE--LQGSNSRSQPSKTLFVK 574
Query: 300 NLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359
L +D T++ LKE F G + ++ + G + +GFV F A A + E E
Sbjct: 575 GLSEDTTEETLKESF--EGSVRARIVTDRETGSSKG-FGFVDFNSEEDAKAAKEAMEDGE 631
Query: 360 IDGQVLDCSLAKPQAD 375
IDG + AKP+ +
Sbjct: 632 IDGNKVTLDWAKPKGE 647
Score = 153 (58.9 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 70/313 (22%), Positives = 141/313 (45%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDE--KKKHA-ELLALPPHGSE------VYLGGIPHDA 131
D D + + +E +K A + E K+K A E GSE +++G + +
Sbjct: 261 DDEDDDEEEEEEEPVKAAPGKRKKEMTKQKEAPEAKKQKVEGSEPTTPFNLFIGNLNPNK 320
Query: 132 SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191
S ++L+ + ++ ++ + +G + + +V F + E +A+E L ++ G +I
Sbjct: 321 SVNELKFAISELFAKNDLAVVDVR-TGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEI 378
Query: 192 KCSA--------AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNR 243
K +A L N+ N ED++++ + + I LV +++
Sbjct: 379 KLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKE----VFEDAMEIRLVSQD---GKSK 431
Query: 244 GFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA------DPRNAESSAAS-QVKAL 296
G A+IE+ + A AE + ++ + +D + ++ + R ++S S + K L
Sbjct: 432 GIAYIEFKSEADAEKNLEEKQGAE--IDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTL 489
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
+ NL T++ L+E+F K T + +P G+ + Y F+ FA A +AL +
Sbjct: 490 VLSNLSYSATKETLEEVFE---KATFIKVPQNPHGKPKG-YAFIEFASFEDAKEALNSCN 545
Query: 357 KYEIDGQVLDCSL 369
K EI+G+ + L
Sbjct: 546 KMEIEGRTIRLEL 558
Score = 139 (54.0 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 40/200 (20%), Positives = 93/200 (46%)
Query: 90 DGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEV 149
DG +K +++ + + L + + A+ + L + + T +
Sbjct: 457 DGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFE---KATFI 513
Query: 150 RIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC------SAAQAKHRLF 203
++ + G+ KGYAF+ F + E A +A+ N E++G+ I+ S +Q LF
Sbjct: 514 KVPQNPH-GKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGSNSRSQPSKTLF 572
Query: 204 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 263
+ + + E+ ++++ G + +V D + + ++GF F+++ + A+ +++ M
Sbjct: 573 VKGLSEDTTEETLKESFE----GSVRARIVTDRETGS-SKGFGFVDFNSEEDAKAAKEAM 627
Query: 264 SNPKFKLDDNAPTVSWADPR 283
+ + +D N T+ WA P+
Sbjct: 628 EDGE--IDGNKVTLDWAKPK 645
Score = 133 (51.9 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 65/314 (20%), Positives = 126/314 (40%)
Query: 84 DAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDAS-----DDDLRH 138
D + D D+E E ++DD +++ E+ G + +P A +DD
Sbjct: 191 DEEDDEDEDDEEDDDEEEEDDSEEEVMEITTAK--GKKTPAKVVPMKAKSVAEEEDDEEE 248
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
E E + D E + K + ++ + E K +K++ S
Sbjct: 249 DEDDEDEDDEEEDDEDDDEEEEEEEPVKAAPGKR-KKEMTKQKEAPEAKKQKVEGSEPTT 307
Query: 199 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEY 258
LFIGN+ N ++++ A++++ +L NR F ++++ + AE
Sbjct: 308 PFNLFIGNLNPNKSVNELKFAISEL---FAKNDLAVVDVRTGTNRKFGYVDFES---AED 361
Query: 259 SRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 318
+ + K+ N + P+ +S + L KNL +IT+D LKE+F
Sbjct: 362 LEKALELTGLKVFGNE--IKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDAM 419
Query: 319 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
+I V ++ G+ + ++ F + A K L+ + EIDG+ + + ++
Sbjct: 420 EIRLV----SQDGKSKG-IAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQE 474
Query: 379 SGGSNSQKSALNPT 392
G S S + T
Sbjct: 475 RTGKTSTWSGESKT 488
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 167 (63.8 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 41/140 (29%), Positives = 75/140 (53%)
Query: 121 EVYLGGIPHDASDDDLR-HFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
++++GGI + +++DL HF + GEV + ++ + +G ++G+AFV F T E A+
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQ-YGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALA 88
Query: 180 ELNSCELKGKKIKCSAAQAKH--RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
+KGK ++ A+++ ++F+G +P ++ E D+R + G V IE D Q
Sbjct: 89 AREQT-IKGKSVEVKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGK-VDDIEWPFDKQ 146
Query: 238 NANQNRGFAFIEYYNHACAE 257
R FAFI + A+
Sbjct: 147 T-KARRNFAFIVFEEEESAD 165
Score = 121 (47.7 bits), Expect = 0.00011, P = 0.00011
Identities = 43/174 (24%), Positives = 72/174 (41%)
Query: 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN-HACAEYS 259
++F+G + +D+ T+ G V ++ D N ++RGFAF+E+ C
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGE-VAQAQVKYDRTNG-RSRGFAFVEFTTGEGC---- 83
Query: 260 RQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 319
K L T+ + + + + K ++V LP D ++ L+ F GK
Sbjct: 84 -------KLALAAREQTIKGKSVE-VKPAKSRENKKVFVGGLPSDYSEQDLRSHFEQFGK 135
Query: 320 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373
+ + P K + R + F+ F E SA KA T K + D A PQ
Sbjct: 136 VDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQT-KQTFGTRECDVKKAVPQ 188
>RGD|1563168 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
"spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
"sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
UCSC:RGD:1563168 Uniprot:D4A916
Length = 494
Score = 138 (53.6 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 38/149 (25%), Positives = 75/149 (50%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTF--RTKELA 174
P ++++G IP + DL+ + G + E+ ++K K +G KG AF+T+ R L
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63
Query: 175 SQ-AIEELNSCELKGKKIKCSAAQAKHR-----LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
+Q A+ E + + I+ A ++ R LF+G + + ++D+RK G +
Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-ID 122
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAE 257
+++ P + +G AF+++ HA A+
Sbjct: 123 ECTVLRGPDGTS--KGCAFVKFQTHAEAQ 149
Score = 98 (39.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++G + +D+D+R + G + E +++G D G +KG AFV F+T A AI
Sbjct: 96 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 154
Query: 181 LNS 183
L+S
Sbjct: 155 LHS 157
Score = 78 (32.5 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 16/78 (20%), Positives = 38/78 (48%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
+++ +LP++ T + ++F G + + + + +GFV F +SA A++
Sbjct: 411 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 470
Query: 356 EKYEIDGQVLDCSLAKPQ 373
++I + L L +P+
Sbjct: 471 NGFQIGMKRLKVQLKRPK 488
Score = 67 (28.6 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 21/84 (25%), Positives = 44/84 (52%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+FI ++P+ + + ++ + G VIS ++ D + NQ++ F F+ + N A A+ + Q
Sbjct: 411 IFIYHLPQEFTDSEILQMFVPFGH-VISAKVFVD-RATNQSKCFGFVSFDNPASAQAAIQ 468
Query: 262 KMSNPKFKLDDNAPTVSWADPRNA 285
M+ F++ V P++A
Sbjct: 469 AMNG--FQIGMKRLKVQLKRPKDA 490
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 168 (64.2 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 57/201 (28%), Positives = 98/201 (48%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +++++ IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 94
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 95 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 374
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 149 GRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN-NP 206
Query: 375 DQKTSGGSNSQK-SALNPTYP 394
QKT+ SQ + N YP
Sbjct: 207 SQKTNQAILSQLYQSPNRRYP 227
Score = 141 (54.7 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 47/197 (23%), Positives = 97/197 (49%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++L+ SIGE+ ++++ K +G++ GY FV + + A +AI LN L
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + ++ + ++ G +I+ ++ D Q
Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 163
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA--SQVKALYV 298
+RG FI + AE + + ++ K TV +A+ + +++ A SQ+
Sbjct: 164 ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPN 223
Query: 299 KNLPKDITQDRLKELFA 315
+ P + Q + F+
Sbjct: 224 RRYPGPLAQQAQRFRFS 240
Score = 65 (27.9 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL D + L ++F G +T V + + +GFV A A+ +
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 356 EKYEIDGQVLDCS 368
Y + +VL S
Sbjct: 325 NGYRLGDRVLQVS 337
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 165 (63.1 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 49/204 (24%), Positives = 95/204 (46%)
Query: 187 KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 245
+G +I S + ++F+G + + + D++ TK G V+ + DP N ++RGF
Sbjct: 56 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIKMDP-NTGRSRGF 113
Query: 246 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDI 305
FI + + A E + + + +LD DP+ A + VK ++V L +
Sbjct: 114 GFILFKDAASVE---KVLDQKEHRLDGRV-----IDPKKAMAMKKDPVKKIFVGGLNPEA 165
Query: 306 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
T+++++E F G+I + +P +R + F+ F E K L+ + + + G
Sbjct: 166 TEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK-KFHTVSGSKC 224
Query: 366 DCSLAKP----QADQKTSGGSNSQ 385
+ +A+P Q Q SGG ++
Sbjct: 225 EIKVAQPKEVYQQQQYGSGGRGNR 248
Score = 142 (55.0 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 36/135 (26%), Positives = 70/135 (51%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++GG+ D S DL+ + GEV + I ++G ++G+ F+ F+ + +++
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 181 LNSCELKGKKI--KCSAAQAKH---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L G+ I K + A K ++F+G + E+ +R+ + G + +IEL D
Sbjct: 131 KEH-RLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIELPMD 188
Query: 236 PQNANQNRGFAFIEY 250
P+ N+ RGF FI +
Sbjct: 189 PK-LNKRRGFVFITF 202
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 167 (63.8 bits), Expect = 7.2e-10, P = 7.2e-10
Identities = 50/216 (23%), Positives = 103/216 (47%)
Query: 159 EAKGYAFVTFRTKELASQAI----EELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGED 214
+AK YA L Q I ++L + ++ ++ + A R+++G++ GED
Sbjct: 68 KAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAAQRQRALAIMC--RVYVGSIYYELGED 125
Query: 215 DMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF---KLD 271
+R+A GP + SI++ D +++GFAF+EY A+ + ++M++ +
Sbjct: 126 TIRQAFAPFGP-IKSIDMSWDSVTM-KHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK 183
Query: 272 DNAPT-VSWADPRNAE-SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 329
P+ + A P + + A +YV ++ +D++ D +K +F GKI +
Sbjct: 184 VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP 243
Query: 330 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
+ YGF+ + + S+ A+ + +++ GQ L
Sbjct: 244 TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 279
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 165 (63.1 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 49/204 (24%), Positives = 95/204 (46%)
Query: 187 KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 245
+G +I S + ++F+G + + + D++ TK G V+ + DP N ++RGF
Sbjct: 56 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIKMDP-NTGRSRGF 113
Query: 246 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDI 305
FI + + A E + + + +LD DP+ A + VK ++V L +
Sbjct: 114 GFILFKDAASVE---KVLDQKEHRLDGRV-----IDPKKAMAMKKDPVKKIFVGGLNPEA 165
Query: 306 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
T+++++E F G+I + +P +R + F+ F E K L+ + + + G
Sbjct: 166 TEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK-KFHTVSGSKC 224
Query: 366 DCSLAKP----QADQKTSGGSNSQ 385
+ +A+P Q Q SGG ++
Sbjct: 225 EIKVAQPKEVYQQQQYGSGGRGNR 248
Score = 142 (55.0 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 36/135 (26%), Positives = 70/135 (51%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++GG+ D S DL+ + GEV + I ++G ++G+ F+ F+ + +++
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 181 LNSCELKGKKI--KCSAAQAKH---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L G+ I K + A K ++F+G + E+ +R+ + G + +IEL D
Sbjct: 131 KEH-RLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIELPMD 188
Query: 236 PQNANQNRGFAFIEY 250
P+ N+ RGF FI +
Sbjct: 189 PK-LNKRRGFVFITF 202
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 163 (62.4 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 48/179 (26%), Positives = 90/179 (50%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE-----LAS 175
++++GG+ + + LR + GEV + IMK K + +++G+ FV F+ LAS
Sbjct: 56 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 115
Query: 176 QAIEELNSCELKGKKIKCSAAQAK-HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+ L+ + K+ + +K +++F+G +P N GE ++R+ K G V + ++
Sbjct: 116 RP-HTLDGRNIDPKQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGV-VTEVVMIY 173
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK-LDDNAPTVSWADPRNAESSAASQ 292
D + + RGF FI + + E S + N F + V A+PR+++S A Q
Sbjct: 174 DAEK-QRPRGFGFITFED----EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQ 227
Score = 149 (57.5 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 49/185 (26%), Positives = 94/185 (50%)
Query: 195 AAQAKHR-LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNH 253
AAQA R LF+G + + ++ +R ++ G V+ ++KD + NQ+RGF F+++ +
Sbjct: 49 AAQAALRKLFVGGLDWSTTQETLRSYFSQYGE-VVDCVIMKD-KTTNQSRGFGFVKFKDP 106
Query: 254 ACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKEL 313
C S P LD PR+ ++S ++++ +V +P + + L+E
Sbjct: 107 NCV--GTVLASRPH-TLDGRNIDPKQKGPRS-DNSKSNKI---FVGGIPHNCGETELREY 159
Query: 314 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373
F G +T+VV+ Q +GF+ F + S +A+ N ++I G+ ++ A+P+
Sbjct: 160 FKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPR 218
Query: 374 ADQKT 378
D K+
Sbjct: 219 -DSKS 222
Score = 135 (52.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 23/80 (28%), Positives = 49/80 (61%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+++++GGIPH+ + +LR + K G VTEV ++ + +G+ F+TF ++ QA+
Sbjct: 140 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 199
Query: 180 ELNSCELKGKKIKCSAAQAK 199
++ ++ GKK++ A+ +
Sbjct: 200 -MHFHDIMGKKVEVKRAEPR 218
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 168 (64.2 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 57/201 (28%), Positives = 98/201 (48%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +++++ IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 94
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 95 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 374
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 149 GRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN-NP 206
Query: 375 DQKTSGGSNSQK-SALNPTYP 394
QKT+ SQ + N YP
Sbjct: 207 SQKTNQAILSQLYQSPNRRYP 227
Score = 140 (54.3 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 42/170 (24%), Positives = 87/170 (51%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++L+ SIGE+ ++++ K +G++ GY FV + + A +AI LN L
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + ++ + ++ G +I+ ++ D Q
Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 163
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG FI + AE + + ++ K TV +A+ + +++ A
Sbjct: 164 ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQA 213
Score = 65 (27.9 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL D + L ++F G +T V + + +GFV A A+ +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 356 EKYEIDGQVLDCS 368
Y + +VL S
Sbjct: 338 NGYRLGDRVLQVS 350
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 168 (64.2 bits), Expect = 7.7e-10, P = 7.7e-10
Identities = 57/201 (28%), Positives = 98/201 (48%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +++++ IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 94
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 95 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 374
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 149 GRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN-NP 206
Query: 375 DQKTSGGSNSQK-SALNPTYP 394
QKT+ SQ + N YP
Sbjct: 207 SQKTNQAILSQLYQSPNRRYP 227
Score = 140 (54.3 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 42/170 (24%), Positives = 87/170 (51%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++L+ SIGE+ ++++ K +G++ GY FV + + A +AI LN L
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + ++ + ++ G +I+ ++ D Q
Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 163
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG FI + AE + + ++ K TV +A+ + +++ A
Sbjct: 164 ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQA 213
Score = 65 (27.9 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL D + L ++F G +T V + + +GFV A A+ +
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 356 EKYEIDGQVLDCS 368
Y + +VL S
Sbjct: 339 NGYRLGDRVLQVS 351
>POMBASE|SPBC1861.04c [details] [associations]
symbol:SPBC1861.04c "RNA-binding protein Prp24
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000244
"assembly of spliceosomal tri-snRNP" evidence=ISO] [GO:0000245
"spliceosomal complex assembly" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005688 "U6 snRNP" evidence=ISO] [GO:0017069
"snRNA binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 PomBase:SPBC1861.04c GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0000244 GO:GO:0017069 GO:GO:0000245
GO:GO:0005688 OrthoDB:EOG486CNQ InterPro:IPR008669 Pfam:PF05391
eggNOG:NOG321927 OMA:SQAVMKM PIR:T39743 RefSeq:NP_596721.1
HSSP:P49960 ProteinModelPortal:Q9USY2 EnsemblFungi:SPBC1861.04c.1
GeneID:2539617 KEGG:spo:SPBC1861.04c NextBio:20800774
Uniprot:Q9USY2
Length = 1014
Score = 175 (66.7 bits), Expect = 7.7e-10, P = 7.7e-10
Identities = 64/271 (23%), Positives = 121/271 (44%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTF-RTKELASQAIEE 180
V + +P D S+++L+ F K G + + I++ D+ + A + F T E+ + +
Sbjct: 592 VLVTNLPSDISENELKIFFKDCGNIIRIFILE--DNQKDVKVAQIEFSETSEVLAAKTRD 649
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
L S ++G +I L++ N P + E D+ K + G V+ + N
Sbjct: 650 LKS--IRGHEISVQI-HVDTNLYVTNFPPTYDELDITKLFSAYG-NVVDVRFPS--LRYN 703
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT-VSWADP--RNAESSAASQVKALY 297
NR F +++ + + + K L++ P V +DP R S A + + LY
Sbjct: 704 TNRRFCYVQMRK---PDEAHNALQLHKKLLEEKYPIQVFISDPLRRTPRSGAVYEGRELY 760
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357
V N+ + + ++ F +G++ V IP K + +G+V A AL K
Sbjct: 761 VTNIDFKVNEKDVETFFRDYGQVESVRIP--KRFNQHKGFGYVVMTTNQDAENALSAAGK 818
Query: 358 YEIDGQVLDCSLAKPQAD-QKTSGGSNSQKS 387
++ +VL+ L+KP+ +KT SN ++
Sbjct: 819 -QLGNRVLNVVLSKPRESLEKTRVSSNDNRT 848
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 159 (61.0 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 46/157 (29%), Positives = 82/157 (52%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +D+ + IG + S +LV+D + Q+ G+ F+ Y + A+
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGD-IESCKLVRD-KITGQSLGYGFVNYSDPNDAD 94
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ KL VS+A P SSA+ + LYV LPK ++Q +++LF+ +
Sbjct: 95 KAINTLNG--LKLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMSQKEMEQLFSQY 148
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
G+I T ++ G R GF+ F +R A +A+K
Sbjct: 149 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 184
Score = 146 (56.5 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 44/171 (25%), Positives = 87/171 (50%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + D+ + SIG++ ++++ K +G++ GY FV + A +AI LN +L
Sbjct: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKL 105
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + +M + ++ G +I+ ++ D Q
Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGR-IITSRILVD-QVTG 163
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP-TVSWADPRNAESSAA 290
+RG FI + AE + + ++ K L P TV +A+ + ++ A
Sbjct: 164 VSRGVGFIRFDKRIEAEEAIKGLNGQK-PLGAAEPITVKFANNPSQKTGQA 213
Score = 64 (27.6 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 20/80 (25%), Positives = 33/80 (41%)
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
AA ++V NL + + L +LF G +T V + + +GFV A
Sbjct: 279 AAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEA 338
Query: 349 MKALKNTEKYEIDGQVLDCS 368
A+ + Y + +VL S
Sbjct: 339 AMAIASLNGYRLGERVLQVS 358
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 159 (61.0 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 46/157 (29%), Positives = 82/157 (52%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +D+ + IG + S +LV+D + Q+ G+ F+ Y + A+
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGD-IESCKLVRD-KITGQSLGYGFVNYSDPNDAD 94
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ KL VS+A P SSA+ + LYV LPK ++Q +++LF+ +
Sbjct: 95 KAINTLNG--LKLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMSQKEMEQLFSQY 148
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
G+I T ++ G R GF+ F +R A +A+K
Sbjct: 149 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 184
Score = 146 (56.5 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 44/171 (25%), Positives = 87/171 (50%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + D+ + SIG++ ++++ K +G++ GY FV + A +AI LN +L
Sbjct: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKL 105
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + +M + ++ G +I+ ++ D Q
Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGR-IITSRILVD-QVTG 163
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP-TVSWADPRNAESSAA 290
+RG FI + AE + + ++ K L P TV +A+ + ++ A
Sbjct: 164 VSRGVGFIRFDKRIEAEEAIKGLNGQK-PLGAAEPITVKFANNPSQKTGQA 213
Score = 64 (27.6 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 20/80 (25%), Positives = 33/80 (41%)
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
AA ++V NL + + L +LF G +T V + + +GFV A
Sbjct: 279 AAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEA 338
Query: 349 MKALKNTEKYEIDGQVLDCS 368
A+ + Y + +VL S
Sbjct: 339 AMAIASLNGYRLGERVLQVS 358
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 159 (61.0 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 46/157 (29%), Positives = 82/157 (52%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +D+ + IG + S +LV+D + Q+ G+ F+ Y + A+
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGD-IESCKLVRD-KITGQSLGYGFVNYSDPNDAD 94
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ KL VS+A P SSA+ + LYV LPK ++Q +++LF+ +
Sbjct: 95 KAINTLNG--LKLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMSQKEMEQLFSQY 148
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
G+I T ++ G R GF+ F +R A +A+K
Sbjct: 149 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 184
Score = 146 (56.5 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 44/171 (25%), Positives = 87/171 (50%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + D+ + SIG++ ++++ K +G++ GY FV + A +AI LN +L
Sbjct: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKL 105
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + +M + ++ G +I+ ++ D Q
Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGR-IITSRILVD-QVTG 163
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP-TVSWADPRNAESSAA 290
+RG FI + AE + + ++ K L P TV +A+ + ++ A
Sbjct: 164 VSRGVGFIRFDKRIEAEEAIKGLNGQK-PLGAAEPITVKFANNPSQKTGQA 213
Score = 64 (27.6 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 20/80 (25%), Positives = 33/80 (41%)
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
AA ++V NL + + L +LF G +T V + + +GFV A
Sbjct: 280 AAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEA 339
Query: 349 MKALKNTEKYEIDGQVLDCS 368
A+ + Y + +VL S
Sbjct: 340 AMAIASLNGYRLGERVLQVS 359
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 168 (64.2 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 66/288 (22%), Positives = 131/288 (45%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G + D ++D L + G + RI + + GY +V FR A A+ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 182 NSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV----TKIGPGVISIELV 233
N + GK + +Q L +GN+ +N + +A+ + G ++S ++V
Sbjct: 80 NFDLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFG-NILSCKVV 138
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS-WADPRNAESSAASQ 292
D N ++G+A++ + + A A + M+ +L++ V + P + ++
Sbjct: 139 CDD---NGSKGYAYVHFDSLAAANRAIWHMNG--VRLNNRQVYVGRFKFPEERAAEVRTR 193
Query: 293 VKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
+A ++VKN DI ++LK+LF+ +G V + G+ + +GFV + +A
Sbjct: 194 DRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKG-FGFVRYETHEAA 252
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSAL-NPTYPP 395
KA+ IDG+VL A+ + ++ ++ L + T PP
Sbjct: 253 QKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPP 300
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 168 (64.2 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 57/201 (28%), Positives = 98/201 (48%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +++++ IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 65 SKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 122
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 123 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 176
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 374
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 177 GRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN-NP 234
Query: 375 DQKTSGGSNSQK-SALNPTYP 394
QKT+ SQ + N YP
Sbjct: 235 SQKTNQAILSQLYQSPNRRYP 255
Score = 140 (54.3 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 42/170 (24%), Positives = 87/170 (51%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++L+ SIGE+ ++++ K +G++ GY FV + + A +AI LN L
Sbjct: 74 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 133
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + ++ + ++ G +I+ ++ D Q
Sbjct: 134 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 191
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG FI + AE + + ++ K TV +A+ + +++ A
Sbjct: 192 ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQA 241
Score = 65 (27.9 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL D + L ++F G +T V + + +GFV A A+ +
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 356 EKYEIDGQVLDCS 368
Y + +VL S
Sbjct: 366 NGYRLGDRVLQVS 378
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 168 (64.2 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 57/201 (28%), Positives = 99/201 (49%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P++ +++++ IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 65 SKTNLIVNYLPQSMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYVDPKDAE 122
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 123 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 176
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK--NTEKYEIDGQVLDCSLAKPQA 374
G+I T ++ G R GF+ F +R A +A+K N +K + + A
Sbjct: 177 GRIITSRILVDQVTGMSRG-VGFIRFDKRIEAEEAIKGLNGQKPPAATEPITVKFAN-NP 234
Query: 375 DQKTSGGSNSQK-SALNPTYP 394
QKT+ SQ + N YP
Sbjct: 235 SQKTNQAILSQLYHSPNRRYP 255
Score = 145 (56.1 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 42/170 (24%), Positives = 86/170 (50%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + ++L+ SIGE+ ++++ K +G++ GY FV + + A +AI LN L
Sbjct: 74 LPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRL 133
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + ++ + ++ G +I+ ++ D Q
Sbjct: 134 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 191
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG FI + AE + + ++ K TV +A+ + +++ A
Sbjct: 192 MSRGVGFIRFDKRIEAEEAIKGLNGQKPPAATEPITVKFANNPSQKTNQA 241
Score = 65 (27.9 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL D + L ++F G +T V + + +GFV A A+ +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 356 EKYEIDGQVLDCS 368
Y + +VL S
Sbjct: 367 NGYRLGDRVLQVS 379
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 168 (64.2 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 57/201 (28%), Positives = 98/201 (48%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +++++ IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 66 SKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 123
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 124 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 177
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 374
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 178 GRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN-NP 235
Query: 375 DQKTSGGSNSQK-SALNPTYP 394
QKT+ SQ + N YP
Sbjct: 236 SQKTNQAILSQLYQSPNRRYP 256
Score = 140 (54.3 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 42/170 (24%), Positives = 87/170 (51%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++L+ SIGE+ ++++ K +G++ GY FV + + A +AI LN L
Sbjct: 75 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 134
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + ++ + ++ G +I+ ++ D Q
Sbjct: 135 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 192
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG FI + AE + + ++ K TV +A+ + +++ A
Sbjct: 193 ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQA 242
Score = 65 (27.9 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL D + L ++F G +T V + + +GFV A A+ +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 356 EKYEIDGQVLDCS 368
Y + +VL S
Sbjct: 367 NGYRLGDRVLQVS 379
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 168 (64.2 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 57/201 (28%), Positives = 98/201 (48%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +++++ IG + S +LV+D + Q+ G+ F+ Y + AE
Sbjct: 66 SKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDAE 123
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ +L VS+A P SSA+ + LYV LPK +TQ L++LF+ +
Sbjct: 124 KAINTLNG--LRLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMTQKELEQLFSQY 177
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQA 374
G+I T ++ G R GF+ F +R A +A+K + G + + A
Sbjct: 178 GRIITSRILVDQVTGISRG-VGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFAN-NP 235
Query: 375 DQKTSGGSNSQK-SALNPTYP 394
QKT+ SQ + N YP
Sbjct: 236 SQKTNQAILSQLYQSPNRRYP 256
Score = 140 (54.3 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 42/170 (24%), Positives = 87/170 (51%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++L+ SIGE+ ++++ K +G++ GY FV + + A +AI LN L
Sbjct: 75 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 134
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + ++ + ++ G +I+ ++ D Q
Sbjct: 135 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 192
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG FI + AE + + ++ K TV +A+ + +++ A
Sbjct: 193 ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQA 242
Score = 62 (26.9 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL D + L ++F G +T V + + +GFV A A+ +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 356 EKYEIDGQVL 365
Y + +VL
Sbjct: 368 NGYRLGDRVL 377
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 159 (61.0 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 46/157 (29%), Positives = 82/157 (52%)
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+K L + +P+N +D+ + IG + S +LV+D + Q+ G+ F+ Y + A+
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGD-IESCKLVRD-KITGQSLGYGFVNYSDPNDAD 94
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
+ ++ KL VS+A P SSA+ + LYV LPK ++Q +++LF+ +
Sbjct: 95 KAINTLNG--LKLQTKTIKVSYARP----SSASIRDANLYVSGLPKTMSQKEMEQLFSQY 148
Query: 318 GKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
G+I T ++ G R GF+ F +R A +A+K
Sbjct: 149 GRIITSRILVDQVTGVSRG-VGFIRFDKRIEAEEAIK 184
Score = 146 (56.5 bits), Expect = 9.9e-10, Sum P(2) = 9.9e-10
Identities = 44/171 (25%), Positives = 87/171 (50%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + D+ + SIG++ ++++ K +G++ GY FV + A +AI LN +L
Sbjct: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKL 105
Query: 187 KGKKIKCSAAQ---AKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ A R L++ +P+ + +M + ++ G +I+ ++ D Q
Sbjct: 106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGR-IITSRILVD-QVTG 163
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP-TVSWADPRNAESSAA 290
+RG FI + AE + + ++ K L P TV +A+ + ++ A
Sbjct: 164 VSRGVGFIRFDKRIEAEEAIKGLNGQK-PLGAAEPITVKFANNPSQKTGQA 213
Score = 63 (27.2 bits), Expect = 9.9e-10, Sum P(2) = 9.9e-10
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V NL + + L +LF G +T V + + +GFV A A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 356 EKYEIDGQVLDCS 368
Y + +VL S
Sbjct: 346 NGYRLGERVLQVS 358
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 165 (63.1 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 50/175 (28%), Positives = 84/175 (48%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + D+LR SIGEV ++++ K +G + GY FV + + A +AI LN L
Sbjct: 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRL 86
Query: 187 KGKKIKCSAAQAKHR------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ L+I +PR + D+ G +I+ ++ D Q
Sbjct: 87 QSKTIKVSFARPSSETIKDANLYISGLPRTMTQKDVEDMFLPFGH-IINSRVLVD-QATG 144
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA-DPRNAESSAA-SQV 293
+RG AFI + + AE + + K TV +A +P +++ A SQ+
Sbjct: 145 LSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFAANPNQSKNMALLSQI 199
Score = 146 (56.5 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 46/172 (26%), Positives = 85/172 (49%)
Query: 193 CSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN 252
C + L + +P+N +D++R + IG V S +L++D + A + G+ F+ Y N
Sbjct: 13 CRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGE-VESAKLIRD-KVAGHSLGYGFVNYLN 70
Query: 253 HACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKE 312
AE + ++ +L VS+A P SS + LY+ LP+ +TQ +++
Sbjct: 71 AKDAERAINTLNG--LRLQSKTIKVSFARP----SSETIKDANLYISGLPRTMTQKDVED 124
Query: 313 LFAHHGKI--TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 362
+F G I ++V++ A G R F+ F +RS A +A+ + ++ G
Sbjct: 125 MFLPFGHIINSRVLVDQAT-GLSRG-VAFIRFDKRSEAEEAIASFNGHKPPG 174
Score = 82 (33.9 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+ G+P + D+ G + R++ + +G ++G AF+ F + A +AI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIA 165
Query: 180 ELN 182
N
Sbjct: 166 SFN 168
Score = 78 (32.5 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 33/147 (22%), Positives = 58/147 (39%)
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP--KFKLDD-NAPTVSWAD 281
PG VK N NQ++ A + H+ A + + +F+ +S
Sbjct: 173 PGSSEPITVKFAANPNQSKNMALLSQICHSPARRFGGPVHHQAQRFRFSPMGVDHMSSIS 232
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
N SSA+S +++ NL +D + L ++F G +T V + + +GFV
Sbjct: 233 SVNVASSASSGW-CIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 291
Query: 342 FAERSSAMKALKNTEKYEIDGQVLDCS 368
A A+ + Y + + L S
Sbjct: 292 MTNYEEAAMAIASLNGYRLGDKTLQVS 318
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 165 (63.1 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 47/170 (27%), Positives = 80/170 (47%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + ++LR SIGE+ ++++ K +G + GY FV + T + A +AI LN L
Sbjct: 27 LPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL 86
Query: 187 KGKKIKCSAAQAKHR------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ L+I +PR + D+ + G +I+ ++ D Q
Sbjct: 87 QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSPFGR-IINSRVLVD-QTTG 144
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
+RG AFI + + AE + + K TV +A N + A
Sbjct: 145 LSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVA 194
Score = 137 (53.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 42/171 (24%), Positives = 82/171 (47%)
Query: 193 CSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN 252
C + L + +P+N ++++R + IG + S +L++D + A + G+ F+ Y
Sbjct: 13 CRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGE-IESAKLIRD-KVAGHSLGYGFVNYVT 70
Query: 253 HACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKE 312
AE + ++ +L VS+A P SS + LY+ LP+ +TQ +++
Sbjct: 71 AKDAERAINTLNG--LRLQSKTIKVSYARP----SSEVIKDANLYISGLPRTMTQKDVED 124
Query: 313 LFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 362
+F+ G+I V+ G R F+ F +RS A +A+ + ++ G
Sbjct: 125 MFSPFGRIINSRVLVDQTTGLSRG-VAFIRFDKRSEAEEAITSFNGHKPPG 174
Score = 85 (35.0 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+ G+P + D+ G + R++ + +G ++G AF+ F + A +AI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 180 ELN 182
N
Sbjct: 166 SFN 168
Score = 79 (32.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 32/147 (21%), Positives = 58/147 (39%)
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP--KFKLDD-NAPTVSWAD 281
PG VK N NQN+ A + H+ A + + +F+ +S
Sbjct: 173 PGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHMSGLS 232
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
N +A+S +++ NL +D + L ++F G +T V + + +GFV
Sbjct: 233 GVNVPGNASSGW-CIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 291
Query: 342 FAERSSAMKALKNTEKYEIDGQVLDCS 368
A A+ + Y + ++L S
Sbjct: 292 MTNYEEASMAIASLNGYRLGDKILQVS 318
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 165 (63.1 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 49/204 (24%), Positives = 95/204 (46%)
Query: 187 KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 245
+G +I S + ++F+G + + + D++ TK G V+ + DP N ++RGF
Sbjct: 56 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIKMDP-NTGRSRGF 113
Query: 246 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDI 305
FI + + A E + + + +LD DP+ A + VK ++V L +
Sbjct: 114 GFILFKDAASVE---KVLDQKEHRLDGRV-----IDPKKAMAMKKDPVKKIFVGGLNPEA 165
Query: 306 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
T+++++E F G+I + +P +R + F+ F E K L+ + + + G
Sbjct: 166 TEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK-KFHTVSGSKC 224
Query: 366 DCSLAKP----QADQKTSGGSNSQ 385
+ +A+P Q Q SGG ++
Sbjct: 225 EIKVAQPKEVYQQQQYGSGGRGNR 248
Score = 142 (55.0 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 36/135 (26%), Positives = 70/135 (51%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++GG+ D S DL+ + GEV + I ++G ++G+ F+ F+ + +++
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 181 LNSCELKGKKI--KCSAAQAKH---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L G+ I K + A K ++F+G + E+ +R+ + G + +IEL D
Sbjct: 131 KEH-RLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIELPMD 188
Query: 236 PQNANQNRGFAFIEY 250
P+ N+ RGF FI +
Sbjct: 189 PK-LNKRRGFVFITF 202
>WB|WBGene00006331 [details] [associations]
symbol:sup-26 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003730
EMBL:Z50874 GeneTree:ENSGT00630000089747 GeneID:175551
KEGG:cel:CELE_R10E4.2 CTD:175551 RefSeq:NP_001254892.1
ProteinModelPortal:D5MCR3 SMR:D5MCR3 EnsemblMetazoa:R10E4.2q
WormBase:R10E4.2q ArrayExpress:D5MCR3 Uniprot:D5MCR3
Length = 476
Score = 168 (64.2 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 37/132 (28%), Positives = 67/132 (50%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + +Y+ G+ + +DD LR C G + + + K + KGY FV F + + A+
Sbjct: 144 PLSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAA 203
Query: 176 QAIEELNSCELKGKKIKCSAA-QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
A++ LN+ ++ + K Q L+I N+P ++ E + + K G VIS +++
Sbjct: 204 AAVDGLNTEGVQAQMAKLQQQEQDPTNLYIANLPLDFTEQMLETELNKFGM-VISTRILR 262
Query: 235 DPQNANQNRGFA 246
P N ++ GFA
Sbjct: 263 TPDNQSRGVGFA 274
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 146 (56.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 24/75 (32%), Positives = 48/75 (64%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
VY+G P ++++L +F SIG++ VRI+ +++G +G+AF+ F + A +A+E++
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 182 NSCELKGKKIKCSAA 196
N E G+ ++ + A
Sbjct: 67 NGAEFNGRPLRVNLA 81
Score = 103 (41.3 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAM 349
S + ++YV N P T++ L F+ G+I V ++ + G+ R + F+ FAE SA
Sbjct: 2 SGIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRG-FAFIEFAEEGSAQ 60
Query: 350 KALKNTEKYEIDGQVLDCSLA 370
+A++ E +G+ L +LA
Sbjct: 61 RAVEQMNGAEFNGRPLRVNLA 81
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 146 (56.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 25/82 (30%), Positives = 49/82 (59%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G VY+G P ++DDL ++ G V+ VRI+ +++G +G+AFV F + A +A+
Sbjct: 3 GFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAV 62
Query: 179 EELNSCELKGKKIKCSAAQAKH 200
++ N + G+ ++ + AQ ++
Sbjct: 63 DQFNGVDFNGRALRVNLAQNRN 84
Score = 96 (38.9 bits), Expect = 0.00039, P = 0.00039
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALK 353
++YV N P T+D L F+ G ++ V ++ + G+ R + FV F E ++A +A+
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRG-FAFVEFTEEAAAQRAVD 63
Query: 354 NTEKYEIDGQVLDCSLAK 371
+ +G+ L +LA+
Sbjct: 64 QFNGVDFNGRALRVNLAQ 81
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 146 (56.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 25/82 (30%), Positives = 49/82 (59%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G VY+G P ++DDL ++ G V+ VRI+ +++G +G+AFV F + A +A+
Sbjct: 3 GFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAV 62
Query: 179 EELNSCELKGKKIKCSAAQAKH 200
++ N + G+ ++ + AQ ++
Sbjct: 63 DQFNGVDFNGRALRVNLAQNRN 84
Score = 96 (38.9 bits), Expect = 0.00039, P = 0.00039
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALK 353
++YV N P T+D L F+ G ++ V ++ + G+ R + FV F E ++A +A+
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRG-FAFVEFTEEAAAQRAVD 63
Query: 354 NTEKYEIDGQVLDCSLAK 371
+ +G+ L +LA+
Sbjct: 64 QFNGVDFNGRALRVNLAQ 81
>TAIR|locus:4515103541 [details] [associations]
symbol:AT5G08695 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:YLEWAPR IPI:IPI00539175 RefSeq:NP_001119193.1 UniGene:At.68994
ProteinModelPortal:F4KCG5 SMR:F4KCG5 EnsemblPlants:AT5G08695.1
GeneID:6241377 KEGG:ath:AT5G08695 Uniprot:F4KCG5
Length = 690
Score = 134 (52.2 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 43/156 (27%), Positives = 80/156 (51%)
Query: 84 DAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSE-------VYLGGIPHDASDDDL 136
DA + D E+K DKDD+ HA + + GS+ +++ G+P+ ++++L
Sbjct: 188 DAINVFPIDGEVKADRVDKDDDG--HA--MEVEADGSDDVLDAGRLFVHGLPYSTTEEEL 243
Query: 137 -RHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI---- 191
HF K G+++EV ++ KD+ +G AFV + E A A+++L+ +G+ +
Sbjct: 244 MEHFSK-FGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDKLDKLPFQGRTLHILP 302
Query: 192 -KCSAAQAKHRLFIGNVPRNWGED--DMRKAVTKIG 224
K A AK N+P+++ ++ + RKA G
Sbjct: 303 AKPRAMSAKQVDNSSNLPKSFKKEREEQRKASEACG 338
Score = 99 (39.9 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 46/193 (23%), Positives = 81/193 (41%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S + + +P ++D LR GE+T+V++ + D G ++ +A++ FR+++ A AI
Sbjct: 4 SRIIVKNVPKYVTEDQLRGIFSEKGEITDVKLKRLSD-GRSRQFAYIGFRSEQKAQDAIT 62
Query: 180 ELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
N +I A R G V + + D K + K P E+ DPQ
Sbjct: 63 YFNKNFKHSHQISVLVADPPPRRTQGKVDA-YAKGD--KQIQKKDP-----EVDHDPQLQ 114
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD-NAPTVSWADPRNA-ESSAASQVKAL- 296
F+ + H +S +P DD N S+ D + +S V +
Sbjct: 115 E------FL-HQEHKLKFWSNDMCIHPSNGADDPNKAKRSFLDSKKTRKSKVGDDVSDME 167
Query: 297 YVKN-LPKDITQD 308
Y K+ + K++ D
Sbjct: 168 YFKSRIKKNLDSD 180
Score = 89 (36.4 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 28/94 (29%), Positives = 43/94 (45%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
L+V LP T++ L E F+ G I++V + K + FV + SA A+
Sbjct: 229 LFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDKL 288
Query: 356 EKYEIDGQVLDCSLAKPQA--DQKTSGGSNSQKS 387
+K G+ L AKP+A ++ SN KS
Sbjct: 289 DKLPFQGRTLHILPAKPRAMSAKQVDNSSNLPKS 322
Score = 83 (34.3 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 27/94 (28%), Positives = 46/94 (48%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
L VK+LP T+ L ++F G + K+V+PP K + F+ AE +AM L T
Sbjct: 423 LLVKHLPFASTEKELAQMFRKFGSLDKIVLPPTKT---MALVVFLEAAEARAAMNGLAYT 479
Query: 356 EKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSAL 389
+Y+ L+ + + + K + +KSA+
Sbjct: 480 -RYKDAPLYLEWA-PRDILEPKALADNKEKKSAV 511
Score = 76 (31.8 bits), Expect = 7.8e-09, Sum P(2) = 7.8e-09
Identities = 26/127 (20%), Positives = 69/127 (54%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKI-GPG-VISI-ELVKDPQNANQNRGFAFIEYYNHACAEY 258
L + N+ ++ ++K +T + G ++S+ ++++D ++ G+ F+E+ + A
Sbjct: 537 LHVKNLSFKTTDEGLKKHLTGVVKQGKILSVKQIIRD-WTRRRSSGYGFVEFDSVETATS 595
Query: 259 SRQKMSNPKFKLDDNAPTVSWADPRNAE-----SSAASQVKALYVKNLPKDITQDRLKEL 313
+ + P LD ++ +++++ + +E S +++ L+VKN+ + T+ L++L
Sbjct: 596 VYRDL--PGNVLDGHSLILNFSENKRSETVGEGSDKVTKLAKLHVKNVAFEATKKELRQL 653
Query: 314 FAHHGKI 320
F+ G+I
Sbjct: 654 FSPFGQI 660
Score = 64 (27.6 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 26/100 (26%), Positives = 42/100 (42%)
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFA---HHGKITKVV-IPPAKPGQERSRYGFVHFA 343
S ++ L+VKNL T + LK+ GKI V I + S YGFV F
Sbjct: 529 SDITESNVLHVKNLSFKTTDEGLKKHLTGVVKQGKILSVKQIIRDWTRRRSSGYGFVEFD 588
Query: 344 ERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSN 383
+A ++ +DG L + ++ + + GS+
Sbjct: 589 SVETATSVYRDLPGNVLDGHSLILNFSENKRSETVGEGSD 628
>TAIR|locus:2032120 [details] [associations]
symbol:AT1G78260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P09651 HOGENOM:HOG000276232 eggNOG:NOG248750 EMBL:AY084982
EMBL:BT030002 IPI:IPI00529893 RefSeq:NP_565175.1 UniGene:At.43623
ProteinModelPortal:Q8LF90 SMR:Q8LF90 STRING:Q8LF90
EnsemblPlants:AT1G78260.1 GeneID:844161 KEGG:ath:AT1G78260
TAIR:At1g78260 InParanoid:Q8LF90 OMA:SPYYYGY PhylomeDB:Q8LF90
ProtClustDB:CLSN2689288 Genevestigator:Q8LF90 Uniprot:Q8LF90
Length = 287
Score = 146 (56.5 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 26/77 (33%), Positives = 50/77 (64%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
++V++GG+ + D++R + + GE+ E I+ K++G++KGY FVTFR + A++A+
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
Query: 180 ELNSCELKGKKIKCSAA 196
+ N + G+K C+ A
Sbjct: 77 DPNPV-IDGRKANCNIA 92
Score = 56 (24.8 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 19/47 (40%), Positives = 22/47 (46%)
Query: 420 QPMVYGRGA-APGGMAMLPMLLPDGRIGYVLQQPGV--QQHNPPPQP 463
Q +YG GA +P M P GY LQ P V Q H+ PQP
Sbjct: 171 QQQLYGGGATSPSSSGATIMPSPY-YYGYSLQAPRVPYQHHHHLPQP 216
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 164 (62.8 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 50/175 (28%), Positives = 83/175 (47%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + D+LR SIGEV ++++ K +G + GY FV + + A +AI LN L
Sbjct: 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRL 86
Query: 187 KGKKIKCSAAQAKHR------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ L+I +PR + D+ G +I+ ++ D Q
Sbjct: 87 QSKTIKVSVARPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGR-IINSRVLVD-QATG 144
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA-DP-RNAESSAASQV 293
+RG AFI + + AE + + K TV +A +P +N + SQ+
Sbjct: 145 LSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFAANPNQNKNMALLSQL 199
Score = 146 (56.5 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 46/172 (26%), Positives = 86/172 (50%)
Query: 193 CSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN 252
C + L + +P+N +D++R + IG V S +L++D + A + G+ F+ Y N
Sbjct: 13 CRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGE-VESAKLIRD-KVAGHSLGYGFVNYLN 70
Query: 253 HACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKE 312
AE + ++ +L VS A P SS + + LY+ LP+ +TQ +++
Sbjct: 71 AKDAERAINTLNG--LRLQSKTIKVSVARP----SSESIKDANLYISGLPRTMTQKDVED 124
Query: 313 LFAHHGKI--TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 362
+F G+I ++V++ A G R F+ F +RS A +A+ + ++ G
Sbjct: 125 MFLPFGRIINSRVLVDQAT-GLSRG-VAFIRFDKRSEAEEAIASFNGHKPPG 174
Score = 82 (33.9 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+ G+P + D+ G + R++ + +G ++G AF+ F + A +AI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIA 165
Query: 180 ELN 182
N
Sbjct: 166 SFN 168
Score = 79 (32.9 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 33/144 (22%), Positives = 57/144 (39%)
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP--KFKLDD-NAPTVSWAD 281
PG VK N NQN+ A + H+ A + + +F+ +S
Sbjct: 173 PGSSEPITVKFAANPNQNKNMALLSQLCHSPARRFGGPVHHQAQRFRFSPMGVDHMSSIS 232
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
N SSA+S +++ NL +D + L ++F G +T V + + +GFV
Sbjct: 233 GVNVASSASSGW-CIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 291
Query: 342 FAERSSAMKALKNTEKYEIDGQVL 365
A A+ + Y + + L
Sbjct: 292 MTNYEEAAMAIASLNGYRLGDKTL 315
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 172 (65.6 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 60/287 (20%), Positives = 134/287 (46%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKD-SGEAKGYAFVTFRTKELASQAI 178
S +Y+G + ++D +R G + + + GKD SG++KGYAF+ + +E A++A+
Sbjct: 588 SRIYVGSLHFSLTEDVIRATFSVFGNIKSLAL--GKDASGKSKGYAFIEYDNQESAAKAL 645
Query: 179 EELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTK---IGPGVISIE---L 232
+ + + + G+ IK + R F G + ++ + + P I+
Sbjct: 646 QSMTNYVMCGRAIKVA------RPFTGTGSHQQQQQQQQQQQQQQILLSPNHQQIQPPVQ 699
Query: 233 VKDPQNANQNRGFAFIEYYN----HACAEYSRQKMSNPKFKLDDNAPTVSWAD-PRNAES 287
+ PQ Q + I + + H +Q+ +P + P D P+ ES
Sbjct: 700 QQQPQQQQQQQQPLQIHHQSLLPHHTQQPQQQQQQQHPILSQSHHPPQHPTPDVPKPNES 759
Query: 288 SAA---SQVKALYVKNLPKDITQDRLKELFAHHGKITKV-VIPPAKPGQERSRYGFVHFA 343
+ ++ +Y+ ++ ++T+D+++ +F+ G++ ++ A G+ + +GFV F
Sbjct: 760 APPVPINEASRIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKG-FGFVDFE 818
Query: 344 ERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALN 390
+ SA A+ +E+ G+ + + +P K+S +N+ +++N
Sbjct: 819 LKKSADDAIATMNGFELLGRSI--KVGRPT---KSSNNNNNNNNSIN 860
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 162 (62.1 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 48/204 (23%), Positives = 95/204 (46%)
Query: 187 KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 245
+G +I S + ++F+G + + + D++ TK G V+ + DP N ++RGF
Sbjct: 61 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIKMDP-NTGRSRGF 118
Query: 246 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDI 305
FI + + + E + + + +LD DP+ A + VK ++V L +
Sbjct: 119 GFILFKDSSSVE---KVLDQKEHRLDGRV-----IDPKKAMAMKKDPVKKIFVGGLNPEA 170
Query: 306 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
T+++++E F G+I + +P +R + F+ F E K L+ + + + G
Sbjct: 171 TEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKC 229
Query: 366 DCSLAKP----QADQKTSGGSNSQ 385
+ +A+P Q Q SGG ++
Sbjct: 230 EIKVAQPKEVYQQQQYGSGGRGNR 253
Score = 142 (55.0 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 36/135 (26%), Positives = 70/135 (51%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++GG+ D S DL+ + GEV + I ++G ++G+ F+ F+ + +++
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 181 LNSCELKGKKI--KCSAAQAKH---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L G+ I K + A K ++F+G + E+ +R+ + G + +IEL D
Sbjct: 136 KEH-RLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGE-IEAIELPID 193
Query: 236 PQNANQNRGFAFIEY 250
P+ N+ RGF FI +
Sbjct: 194 PK-LNKRRGFVFITF 207
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 162 (62.1 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 48/204 (23%), Positives = 95/204 (46%)
Query: 187 KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 245
+G +I S + ++F+G + + + D++ TK G V+ + DP N ++RGF
Sbjct: 61 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIKMDP-NTGRSRGF 118
Query: 246 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDI 305
FI + + + E + + + +LD DP+ A + VK ++V L +
Sbjct: 119 GFILFKDSSSVE---KVLDQKEHRLDGRV-----IDPKKAMAMKKDPVKKIFVGGLNPEA 170
Query: 306 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
T+++++E F G+I + +P +R + F+ F E K L+ + + + G
Sbjct: 171 TEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKC 229
Query: 366 DCSLAKP----QADQKTSGGSNSQ 385
+ +A+P Q Q SGG ++
Sbjct: 230 EIKVAQPKEVYQQQQYGSGGRGNR 253
Score = 142 (55.0 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 36/135 (26%), Positives = 70/135 (51%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++GG+ D S DL+ + GEV + I ++G ++G+ F+ F+ + +++
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 181 LNSCELKGKKI--KCSAAQAKH---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L G+ I K + A K ++F+G + E+ +R+ + G + +IEL D
Sbjct: 136 KEH-RLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGE-IEAIELPID 193
Query: 236 PQNANQNRGFAFIEY 250
P+ N+ RGF FI +
Sbjct: 194 PK-LNKRRGFVFITF 207
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 151 (58.2 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 43/169 (25%), Positives = 88/169 (52%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++G IP ++ D R + G V I++ K + +KG FVTF ++ A +A
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGA 115
Query: 181 LNSCE-LKGKK--IKCSAAQAKHR----LFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
L++ + ++G ++ A ++R LFIG + + E+++R+ K G + ++
Sbjct: 116 LHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGH-IEDCSVL 174
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP-TVSWAD 281
+D ++RG AF+ + N +CA + ++M + + +AP V +AD
Sbjct: 175 RDQDG--KSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVVKFAD 221
Score = 148 (57.2 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 42/154 (27%), Positives = 73/154 (47%)
Query: 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 260
++F+G +PR W E D R+ K G V S +++D ++ ++G F+ +Y+ A ++
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYG-SVFSCNILRD-KSTQASKGCCFVTFYHRKDAIEAQ 113
Query: 261 QKMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 319
+ N K + P + AD N + L++ L K ++ L+E+FA G
Sbjct: 114 GALHNIKVIEGMHHPVQMKPADTENRNE------RKLFIGQLSKKHNEENLREIFAKFGH 167
Query: 320 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
I + + G+ R FV F RS A+ A K
Sbjct: 168 IEDCSVLRDQDGKSRG-CAFVTFTNRSCAVVATK 200
Score = 62 (26.9 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 19/74 (25%), Positives = 30/74 (40%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
L++ +LP+D L FA G I + K +GFV + SA A+
Sbjct: 505 LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAM 564
Query: 356 EKYEIDGQVLDCSL 369
++I + L L
Sbjct: 565 NGFQIGSKRLKVQL 578
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 165 (63.1 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 61/268 (22%), Positives = 126/268 (47%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G + D ++D L + G + RI + + GY +V FR A A+ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 182 NSCELKGKKIKCSAAQAKHRLF---IGNV-PRNWGEDDMRKAV----TKIGPGVISIELV 233
N + GK + +Q RL +GN+ +N + +A+ + G ++S ++V
Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFG-NILSCKVV 138
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS-WADPRNAESSAASQ 292
D N ++G+A++ + + A A + M+ +L++ V + P + ++
Sbjct: 139 CDD---NGSKGYAYVHFDSLAAANRAIWHMNG--VRLNNRQVYVGRFKFPEERAAEVRTR 193
Query: 293 VKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
+A ++VKN D+ ++LKE+F+ +G V + G+ + +GFV + +A
Sbjct: 194 DRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKG-FGFVRYETHEAA 252
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQ 376
KA+ + I+G+VL A+ + ++
Sbjct: 253 QKAVLDLHGKSINGKVLYVGRAQKKIER 280
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 162 (62.1 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 48/204 (23%), Positives = 95/204 (46%)
Query: 187 KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 245
+G +I S + ++F+G + + + D++ TK G V+ + DP N ++RGF
Sbjct: 74 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIKMDP-NTGRSRGF 131
Query: 246 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDI 305
FI + + + E + + + +LD DP+ A + VK ++V L +
Sbjct: 132 GFILFKDSSSVE---KVLDQKEHRLDGRV-----IDPKKAMAMKKDPVKKIFVGGLNPEA 183
Query: 306 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
T+++++E F G+I + +P +R + F+ F E K L+ + + + G
Sbjct: 184 TEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKC 242
Query: 366 DCSLAKP----QADQKTSGGSNSQ 385
+ +A+P Q Q SGG ++
Sbjct: 243 EIKVAQPKEVYQQQQYGSGGRGNR 266
Score = 142 (55.0 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 36/135 (26%), Positives = 70/135 (51%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++GG+ D S DL+ + GEV + I ++G ++G+ F+ F+ + +++
Sbjct: 89 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 148
Query: 181 LNSCELKGKKI--KCSAAQAKH---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L G+ I K + A K ++F+G + E+ +R+ + G + +IEL D
Sbjct: 149 KEH-RLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGE-IEAIELPID 206
Query: 236 PQNANQNRGFAFIEY 250
P+ N+ RGF FI +
Sbjct: 207 PK-LNKRRGFVFITF 220
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 165 (63.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 63/266 (23%), Positives = 117/266 (43%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L + G V +R+ + + + GYA+V F+ A +A++
Sbjct: 32 ASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMD 91
Query: 180 ELNSCELKGKKIKCSAAQ---AKHR-----LFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N L GK ++ +Q A R +FI N+ + + + G ++S +
Sbjct: 92 TMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFG-NILSCK 150
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR---NAE-S 287
+ D + +G+ F+ + A+ + QK++ L V PR N E
Sbjct: 151 VAIDEDGFS--KGYGFVHFETEEAAQNAIQKVNG--MLLAGKKVFVGKFQPRAQRNRELG 206
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A Q +YVKN ++ L++LFA G IT + + G+ + +GFV FA
Sbjct: 207 ETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVE-GKSKG-FGFVAFANPEE 264
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQ 373
A A++ I+G L + + Q
Sbjct: 265 AETAVQALHDSTIEGTDLKLHVCRAQ 290
Score = 134 (52.2 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 45/189 (23%), Positives = 89/189 (47%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQ-NRGFAFIEYYNHACAEYSR 260
L++G++ + E + + + GP V+SI + +D NA + + G+A++ + A AE +
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGP-VLSIRVCRD--NATRLSLGYAYVNFQQPADAERAM 90
Query: 261 QKMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
M+ F+ P + W+ DP S A + +++KNL K I + + F+
Sbjct: 91 DTMN---FEALHGKPMRIMWSQRDPAMRRSGAGN----IFIKNLDKVIDNKSIYDTFSLF 143
Query: 318 GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
G I + + G + YGFVHF +A A++ + G+ + +P+A +
Sbjct: 144 GNILSCKVAIDEDGFSKG-YGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRN 202
Query: 378 TSGGSNSQK 386
G +++
Sbjct: 203 RELGETAKQ 211
Score = 122 (48.0 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 32/105 (30%), Positives = 56/105 (53%)
Query: 99 ESDKDDE-KKKHAELLA--LPPH-GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG 154
+S++ E KKKH + A + + G +Y+ + DD L+ +S G +T ++M
Sbjct: 292 KSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTD 351
Query: 155 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
++G +KG+ FV F E A+ A+ E+NS + K + + AQ K
Sbjct: 352 -ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRK 395
Score = 47 (21.6 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 450 QQPGVQQHNPPPQP 463
Q PGVQQ N P P
Sbjct: 518 QNPGVQQQNVPRPP 531
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 163 (62.4 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 50/205 (24%), Positives = 96/205 (46%)
Query: 187 KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 245
+G +I S + ++F+G + + + D++ TK G V+ + DP N ++RGF
Sbjct: 55 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIKMDP-NTGRSRGF 112
Query: 246 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNL-PKD 304
FI + + A E + + + +LD DP+ A + VK ++V L P+
Sbjct: 113 GFILFKDAASVE---KVLDQKEHRLDGRV-----IDPKKAMAMKKDPVKKIFVGGLNPES 164
Query: 305 ITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV 364
T+++++E F G+I + +P +R + F+ F E K L+ + + + G
Sbjct: 165 PTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK-KFHTVSGSK 223
Query: 365 LDCSLAKP----QADQKTSGGSNSQ 385
+ +A+P Q Q SGG ++
Sbjct: 224 CEIKVAQPKEVYQQQQYGSGGRGNR 248
Score = 144 (55.7 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 37/136 (27%), Positives = 72/136 (52%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++GG+ D S DL+ + GEV + I ++G ++G+ F+ F+ + +++
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 181 LNSCELKGKKI--KCSAAQAKH---RLFIGNV-PRNWGEDDMRKAVTKIGPGVISIELVK 234
L G+ I K + A K ++F+G + P + E+ +R+ + G + +IEL
Sbjct: 130 KEH-RLDGRVIDPKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGE-IEAIELPM 187
Query: 235 DPQNANQNRGFAFIEY 250
DP+ N+ RGF FI +
Sbjct: 188 DPK-LNKRRGFVFITF 202
WARNING: HSPs involving 897 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.132 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 493 395 0.00096 117 3 11 23 0.47 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1147
No. of states in DFA: 605 (64 KB)
Total size of DFA: 252 KB (2135 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 37.61u 0.15s 37.76t Elapsed: 00:00:02
Total cpu time: 37.67u 0.15s 37.82t Elapsed: 00:00:02
Start: Mon May 20 19:33:54 2013 End: Mon May 20 19:33:56 2013
WARNINGS ISSUED: 2