Query 011105
Match_columns 493
No_of_seqs 456 out of 3819
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 08:10:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011105.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011105hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117 Heterogeneous nuclear 100.0 1.5E-58 3.3E-63 422.5 33.4 319 114-441 78-406 (506)
2 TIGR01648 hnRNP-R-Q heterogene 100.0 2E-46 4.4E-51 372.9 35.8 252 116-376 55-310 (578)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.3E-45 7.2E-50 358.6 31.5 256 118-375 2-351 (352)
4 TIGR01628 PABP-1234 polyadenyl 100.0 1.9E-40 4.1E-45 343.4 37.0 254 118-376 87-367 (562)
5 KOG0145 RNA-binding protein EL 100.0 2.6E-41 5.6E-46 288.1 23.2 254 118-373 40-358 (360)
6 TIGR01628 PABP-1234 polyadenyl 100.0 1.9E-38 4.1E-43 328.5 37.7 249 120-374 1-262 (562)
7 KOG0148 Apoptosis-promoting RN 100.0 8.9E-38 1.9E-42 268.5 22.2 227 117-378 4-243 (321)
8 KOG0127 Nucleolar protein fibr 100.0 1.1E-36 2.4E-41 285.5 23.4 252 119-375 5-380 (678)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 9.7E-36 2.1E-40 300.2 29.7 240 118-374 1-352 (481)
10 TIGR01622 SF-CC1 splicing fact 100.0 4.2E-35 9.1E-40 296.9 29.5 249 116-373 86-448 (457)
11 TIGR01659 sex-lethal sex-letha 100.0 6.1E-35 1.3E-39 277.6 26.6 173 116-376 104-278 (346)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 7.6E-34 1.6E-38 291.9 28.2 246 117-373 173-502 (509)
13 KOG0144 RNA-binding protein CU 100.0 2.2E-34 4.8E-39 262.9 19.2 253 119-374 34-505 (510)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.7E-33 5.8E-38 282.4 29.0 240 119-373 96-480 (481)
15 TIGR01645 half-pint poly-U bin 100.0 3.9E-33 8.5E-38 278.1 29.7 147 117-265 105-268 (612)
16 KOG0123 Polyadenylate-binding 100.0 6.3E-29 1.4E-33 237.5 22.2 242 120-375 2-248 (369)
17 KOG0123 Polyadenylate-binding 100.0 5.3E-29 1.2E-33 238.0 20.5 250 118-376 75-352 (369)
18 KOG0127 Nucleolar protein fibr 100.0 3.7E-28 8E-33 228.4 15.2 234 119-355 117-516 (678)
19 KOG0124 Polypyrimidine tract-b 100.0 7.3E-27 1.6E-31 209.1 18.5 247 119-369 113-531 (544)
20 TIGR01645 half-pint poly-U bin 99.9 2.3E-26 5E-31 229.8 21.0 174 199-376 107-287 (612)
21 KOG0110 RNA-binding protein (R 99.9 2.3E-26 5E-31 223.7 18.7 250 117-375 383-695 (725)
22 KOG4212 RNA-binding protein hn 99.9 3.9E-25 8.6E-30 202.5 22.6 144 118-265 43-278 (608)
23 KOG0147 Transcriptional coacti 99.9 1.5E-26 3.2E-31 219.2 13.1 251 116-376 176-531 (549)
24 KOG0117 Heterogeneous nuclear 99.9 3.4E-24 7.5E-29 197.4 28.3 189 170-376 43-251 (506)
25 KOG0131 Splicing factor 3b, su 99.9 6.7E-26 1.4E-30 184.3 12.2 173 118-377 8-181 (203)
26 KOG4211 Splicing factor hnRNP- 99.9 9.5E-24 2.1E-28 197.5 25.1 245 115-372 6-357 (510)
27 KOG4205 RNA-binding protein mu 99.9 2.8E-24 6.1E-29 197.7 20.8 178 118-379 5-182 (311)
28 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.2E-24 2.5E-29 213.3 19.3 170 198-375 2-173 (352)
29 KOG0144 RNA-binding protein CU 99.9 2.3E-25 4.9E-30 204.1 12.6 172 201-378 36-211 (510)
30 KOG0148 Apoptosis-promoting RN 99.9 1.7E-24 3.7E-29 186.8 13.4 154 119-282 62-237 (321)
31 KOG0109 RNA-binding protein LA 99.9 2E-24 4.4E-29 188.2 13.4 153 120-378 3-155 (346)
32 TIGR01648 hnRNP-R-Q heterogene 99.9 1.9E-23 4E-28 208.9 20.6 190 171-374 19-223 (578)
33 KOG0145 RNA-binding protein EL 99.9 5.3E-24 1.1E-28 182.5 12.6 170 198-375 40-211 (360)
34 TIGR01622 SF-CC1 splicing fact 99.9 1.7E-23 3.7E-28 212.2 18.7 171 198-373 88-266 (457)
35 KOG0146 RNA-binding protein ET 99.9 1.1E-22 2.3E-27 175.2 11.9 241 116-377 16-369 (371)
36 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.9E-21 4E-26 200.2 19.2 167 197-373 173-375 (509)
37 KOG0110 RNA-binding protein (R 99.9 3.8E-21 8.2E-26 187.6 14.6 222 117-371 225-596 (725)
38 KOG1190 Polypyrimidine tract-b 99.8 4.1E-20 8.9E-25 168.7 17.3 243 117-377 26-377 (492)
39 KOG0124 Polypyrimidine tract-b 99.8 5.6E-20 1.2E-24 165.2 11.8 171 200-374 114-291 (544)
40 PLN03134 glycine-rich RNA-bind 99.8 4.5E-19 9.8E-24 147.6 14.7 83 293-375 34-116 (144)
41 KOG4206 Spliceosomal protein s 99.8 6.5E-18 1.4E-22 144.0 16.6 207 119-371 9-220 (221)
42 KOG1456 Heterogeneous nuclear 99.8 2.5E-17 5.5E-22 148.8 19.1 244 115-376 27-366 (494)
43 KOG0105 Alternative splicing f 99.8 1.7E-17 3.6E-22 135.5 15.5 174 117-362 4-177 (241)
44 KOG1548 Transcription elongati 99.8 4.2E-17 9.2E-22 146.3 17.7 205 115-374 130-353 (382)
45 KOG0120 Splicing factor U2AF, 99.7 4.8E-17 1E-21 157.3 16.8 245 118-373 174-492 (500)
46 KOG0147 Transcriptional coacti 99.7 5.5E-18 1.2E-22 161.3 9.1 175 198-377 178-362 (549)
47 KOG4211 Splicing factor hnRNP- 99.7 4.2E-16 9.1E-21 146.6 20.5 167 201-378 12-187 (510)
48 PLN03134 glycine-rich RNA-bind 99.7 4E-17 8.6E-22 136.0 10.8 83 117-199 32-114 (144)
49 KOG1190 Polypyrimidine tract-b 99.7 1.5E-15 3.2E-20 139.2 19.9 235 121-372 152-490 (492)
50 KOG1365 RNA-binding protein Fu 99.7 1.7E-15 3.7E-20 137.5 19.3 253 118-375 59-364 (508)
51 KOG0122 Translation initiation 99.6 1.5E-15 3.3E-20 130.1 8.8 82 292-373 188-269 (270)
52 KOG1457 RNA binding protein (c 99.6 1.4E-14 3.1E-19 122.2 14.2 225 118-361 33-274 (284)
53 KOG0149 Predicted RNA-binding 99.6 4.7E-15 1E-19 126.8 10.4 79 294-373 13-91 (247)
54 KOG0106 Alternative splicing f 99.6 1.6E-15 3.5E-20 131.1 7.4 167 120-370 2-168 (216)
55 KOG0149 Predicted RNA-binding 99.6 2E-15 4.3E-20 129.0 7.5 78 119-197 12-89 (247)
56 TIGR01659 sex-lethal sex-letha 99.6 3.9E-15 8.4E-20 142.2 10.2 82 292-373 106-187 (346)
57 PF00076 RRM_1: RNA recognitio 99.6 6.1E-15 1.3E-19 108.0 8.6 70 296-366 1-70 (70)
58 PF00076 RRM_1: RNA recognitio 99.6 6.3E-15 1.4E-19 107.9 8.6 70 122-192 1-70 (70)
59 KOG0121 Nuclear cap-binding pr 99.6 5.5E-15 1.2E-19 113.5 8.0 83 293-375 36-118 (153)
60 KOG4207 Predicted splicing fac 99.6 7.7E-15 1.7E-19 122.3 9.2 83 291-373 11-93 (256)
61 KOG0122 Translation initiation 99.6 7.5E-15 1.6E-19 125.9 9.0 82 118-199 188-269 (270)
62 KOG0125 Ataxin 2-binding prote 99.6 7E-15 1.5E-19 131.2 8.3 86 288-375 91-176 (376)
63 KOG0114 Predicted RNA-binding 99.5 3.6E-14 7.8E-19 104.7 9.0 79 293-374 18-96 (124)
64 KOG0113 U1 small nuclear ribon 99.5 9E-14 1.9E-18 122.7 12.8 88 290-377 98-185 (335)
65 PF14259 RRM_6: RNA recognitio 99.5 2.8E-14 6.1E-19 104.3 8.3 70 296-366 1-70 (70)
66 PF14259 RRM_6: RNA recognitio 99.5 4E-14 8.6E-19 103.5 8.8 70 122-192 1-70 (70)
67 PLN03120 nucleic acid binding 99.5 4.9E-14 1.1E-18 125.3 10.4 76 294-373 5-80 (260)
68 COG0724 RNA-binding proteins ( 99.5 1.3E-13 2.8E-18 131.2 13.5 169 119-353 115-285 (306)
69 KOG0126 Predicted RNA-binding 99.5 2.1E-15 4.7E-20 123.1 -0.0 81 117-197 33-113 (219)
70 KOG0121 Nuclear cap-binding pr 99.5 4.2E-14 9.1E-19 108.7 6.9 81 116-196 33-113 (153)
71 KOG0107 Alternative splicing f 99.5 1.6E-13 3.5E-18 111.7 10.3 78 294-376 11-88 (195)
72 KOG0107 Alternative splicing f 99.5 6E-14 1.3E-18 114.2 7.7 76 118-198 9-84 (195)
73 PLN03120 nucleic acid binding 99.5 1.1E-13 2.4E-18 123.1 10.0 76 119-198 4-79 (260)
74 KOG0126 Predicted RNA-binding 99.5 5.2E-15 1.1E-19 120.8 1.5 82 293-374 35-116 (219)
75 KOG0105 Alternative splicing f 99.5 1.9E-13 4.1E-18 112.0 10.1 77 293-372 6-82 (241)
76 KOG0125 Ataxin 2-binding prote 99.5 6.7E-14 1.4E-18 125.0 7.7 82 116-199 93-174 (376)
77 KOG0113 U1 small nuclear ribon 99.5 1.1E-13 2.4E-18 122.1 8.8 80 118-197 100-179 (335)
78 PLN03121 nucleic acid binding 99.5 3.7E-13 7.9E-18 117.6 10.0 77 117-197 3-79 (243)
79 KOG0114 Predicted RNA-binding 99.5 3.8E-13 8.2E-18 99.4 8.4 81 116-199 15-95 (124)
80 KOG4212 RNA-binding protein hn 99.5 1.8E-12 3.8E-17 120.1 14.7 169 199-372 44-293 (608)
81 PLN03213 repressor of silencin 99.4 3E-13 6.4E-18 127.0 9.4 77 293-373 10-88 (759)
82 PLN03213 repressor of silencin 99.4 2.9E-13 6.4E-18 127.0 9.4 78 118-199 9-88 (759)
83 KOG0111 Cyclophilin-type pepti 99.4 1.2E-13 2.5E-18 116.3 5.5 84 293-376 10-93 (298)
84 KOG4207 Predicted splicing fac 99.4 1.8E-13 3.9E-18 114.2 6.2 80 118-197 12-91 (256)
85 KOG1456 Heterogeneous nuclear 99.4 1.9E-11 4E-16 111.2 19.2 165 199-376 31-202 (494)
86 KOG0130 RNA-binding protein RB 99.4 3.2E-13 6.9E-18 104.7 6.3 81 117-197 70-150 (170)
87 PLN03121 nucleic acid binding 99.4 1.1E-12 2.3E-17 114.8 10.3 77 293-373 5-81 (243)
88 smart00362 RRM_2 RNA recogniti 99.4 2E-12 4.3E-17 94.8 9.6 72 295-368 1-72 (72)
89 smart00362 RRM_2 RNA recogniti 99.4 2.5E-12 5.4E-17 94.3 9.4 72 121-194 1-72 (72)
90 KOG0131 Splicing factor 3b, su 99.4 7.4E-13 1.6E-17 108.6 6.2 78 294-371 10-87 (203)
91 KOG0130 RNA-binding protein RB 99.4 1.7E-12 3.7E-17 100.7 7.2 83 293-375 72-154 (170)
92 smart00360 RRM RNA recognition 99.4 3.4E-12 7.3E-17 93.2 8.4 71 298-368 1-71 (71)
93 smart00360 RRM RNA recognition 99.3 6.1E-12 1.3E-16 91.8 8.8 71 124-194 1-71 (71)
94 KOG0111 Cyclophilin-type pepti 99.3 1.3E-12 2.9E-17 110.0 5.4 84 117-200 8-91 (298)
95 PF13893 RRM_5: RNA recognitio 99.3 9.7E-12 2.1E-16 86.1 8.2 56 310-370 1-56 (56)
96 cd00590 RRM RRM (RNA recogniti 99.3 1.7E-11 3.6E-16 90.4 9.9 74 295-369 1-74 (74)
97 KOG0108 mRNA cleavage and poly 99.3 7.1E-12 1.5E-16 121.3 8.4 79 120-198 19-97 (435)
98 KOG0132 RNA polymerase II C-te 99.3 1.5E-10 3.2E-15 115.1 17.5 78 293-376 421-498 (894)
99 cd00590 RRM RRM (RNA recogniti 99.3 3.2E-11 7E-16 88.8 10.0 74 121-195 1-74 (74)
100 KOG0129 Predicted RNA-binding 99.3 1E-10 2.2E-15 111.6 15.5 171 116-354 256-432 (520)
101 KOG0108 mRNA cleavage and poly 99.3 8.7E-12 1.9E-16 120.7 8.5 82 294-375 19-100 (435)
102 KOG4210 Nuclear localization s 99.3 1.4E-11 3.1E-16 114.0 9.5 182 118-377 87-268 (285)
103 smart00361 RRM_1 RNA recogniti 99.3 1.5E-11 3.2E-16 89.4 7.7 62 307-368 2-70 (70)
104 KOG0116 RasGAP SH3 binding pro 99.3 3.7E-11 8E-16 115.6 12.1 83 294-377 289-371 (419)
105 KOG0128 RNA-binding protein SA 99.3 1.4E-12 2.9E-17 130.9 2.2 232 117-375 569-817 (881)
106 KOG0132 RNA polymerase II C-te 99.3 2.2E-10 4.9E-15 113.8 17.1 76 117-198 419-494 (894)
107 COG0724 RNA-binding proteins ( 99.2 3.5E-11 7.6E-16 114.4 10.2 80 293-372 115-194 (306)
108 KOG1365 RNA-binding protein Fu 99.2 2.3E-11 4.9E-16 111.0 6.9 143 120-266 162-347 (508)
109 smart00361 RRM_1 RNA recogniti 99.2 7.3E-11 1.6E-15 85.7 8.1 61 133-193 2-69 (70)
110 KOG0415 Predicted peptidyl pro 99.2 1.3E-11 2.8E-16 111.4 4.9 84 116-199 236-319 (479)
111 KOG4307 RNA binding protein RB 99.2 5E-10 1.1E-14 109.8 14.8 249 118-375 433-738 (944)
112 KOG4660 Protein Mei2, essentia 99.2 1.6E-10 3.5E-15 111.2 11.2 72 116-192 72-143 (549)
113 KOG0109 RNA-binding protein LA 99.2 3.9E-11 8.4E-16 105.8 6.3 74 294-375 3-76 (346)
114 PF13893 RRM_5: RNA recognitio 99.2 1.3E-10 2.9E-15 80.4 7.5 56 136-196 1-56 (56)
115 KOG0415 Predicted peptidyl pro 99.1 7.7E-11 1.7E-15 106.5 5.9 82 294-375 240-321 (479)
116 KOG0146 RNA-binding protein ET 99.1 8.3E-11 1.8E-15 102.3 5.3 85 116-200 282-366 (371)
117 KOG4307 RNA binding protein RB 99.1 7.2E-10 1.6E-14 108.7 11.9 166 202-371 314-512 (944)
118 KOG4454 RNA binding protein (R 99.1 2.2E-11 4.8E-16 102.9 1.0 138 116-357 6-147 (267)
119 KOG4208 Nucleolar RNA-binding 99.1 5E-10 1.1E-14 94.4 7.6 80 294-373 50-130 (214)
120 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.1E-09 2.4E-14 105.0 10.0 82 116-197 402-483 (940)
121 KOG4206 Spliceosomal protein s 99.0 1.1E-09 2.4E-14 94.0 8.1 80 294-376 10-93 (221)
122 KOG4208 Nucleolar RNA-binding 99.0 1.3E-09 2.9E-14 91.9 8.1 83 117-199 47-130 (214)
123 KOG0120 Splicing factor U2AF, 99.0 2.7E-09 5.9E-14 104.0 10.9 152 116-268 286-479 (500)
124 KOG0112 Large RNA-binding prot 99.0 4E-10 8.7E-15 113.9 4.5 163 116-375 369-533 (975)
125 KOG4205 RNA-binding protein mu 98.9 7.1E-10 1.5E-14 102.9 4.8 83 293-376 6-88 (311)
126 KOG0226 RNA-binding proteins [ 98.9 7.2E-10 1.6E-14 96.1 4.2 173 119-374 96-271 (290)
127 KOG0153 Predicted RNA-binding 98.9 3.3E-09 7.2E-14 96.2 8.2 77 290-372 225-302 (377)
128 KOG4661 Hsp27-ERE-TATA-binding 98.9 2.8E-09 6E-14 102.3 7.2 80 293-372 405-484 (940)
129 KOG1457 RNA binding protein (c 98.8 4.7E-08 1E-12 83.3 10.3 87 293-379 34-124 (284)
130 KOG0153 Predicted RNA-binding 98.7 2.9E-08 6.3E-13 90.2 7.6 76 117-198 226-302 (377)
131 KOG4676 Splicing factor, argin 98.7 2.2E-09 4.7E-14 98.6 0.4 212 120-373 8-226 (479)
132 KOG0533 RRM motif-containing p 98.7 2E-07 4.3E-12 83.2 11.7 82 294-376 84-165 (243)
133 KOG1995 Conserved Zn-finger pr 98.7 6.3E-07 1.4E-11 82.5 14.8 86 290-375 63-156 (351)
134 KOG0533 RRM motif-containing p 98.7 8.8E-08 1.9E-12 85.4 8.7 83 115-198 79-161 (243)
135 KOG0128 RNA-binding protein SA 98.7 1.4E-09 3.1E-14 109.6 -3.0 134 118-265 666-799 (881)
136 PF04059 RRM_2: RNA recognitio 98.6 2.4E-07 5.3E-12 70.4 9.3 78 120-197 2-85 (97)
137 KOG3152 TBP-binding protein, a 98.6 2.6E-08 5.6E-13 86.8 4.4 74 118-191 73-158 (278)
138 KOG4849 mRNA cleavage factor I 98.6 4.9E-07 1.1E-11 82.1 12.6 75 294-368 81-157 (498)
139 PF04059 RRM_2: RNA recognitio 98.6 1.9E-07 4.2E-12 70.9 8.5 81 294-374 2-88 (97)
140 KOG0116 RasGAP SH3 binding pro 98.6 9.8E-08 2.1E-12 92.3 7.2 77 119-196 288-364 (419)
141 KOG4209 Splicing factor RNPS1, 98.5 2.3E-07 5E-12 83.2 7.7 80 293-373 101-180 (231)
142 KOG1548 Transcription elongati 98.5 3.9E-07 8.5E-12 82.9 7.8 82 293-375 134-223 (382)
143 KOG4454 RNA binding protein (R 98.5 7E-08 1.5E-12 82.0 2.8 78 294-373 10-87 (267)
144 KOG2193 IGF-II mRNA-binding pr 98.5 2.5E-08 5.5E-13 92.6 0.1 157 120-375 2-159 (584)
145 KOG0226 RNA-binding proteins [ 98.4 2.3E-07 4.9E-12 80.9 4.6 82 116-197 187-268 (290)
146 PF11608 Limkain-b1: Limkain b 98.4 9.5E-07 2E-11 63.5 6.9 71 120-200 3-78 (90)
147 PF11608 Limkain-b1: Limkain b 98.4 1.6E-06 3.6E-11 62.3 7.7 70 294-373 3-77 (90)
148 KOG4209 Splicing factor RNPS1, 98.4 3.9E-07 8.5E-12 81.7 5.8 81 116-197 98-178 (231)
149 KOG0106 Alternative splicing f 98.4 3.5E-07 7.6E-12 79.7 5.2 73 294-374 2-74 (216)
150 KOG4660 Protein Mei2, essentia 98.4 1.7E-07 3.7E-12 90.8 3.5 69 293-366 75-143 (549)
151 KOG0921 Dosage compensation co 98.3 3.8E-06 8.3E-11 86.1 11.1 20 472-491 1261-1280(1282)
152 KOG0151 Predicted splicing reg 98.3 1.6E-06 3.4E-11 86.1 6.7 84 290-373 171-257 (877)
153 KOG0921 Dosage compensation co 98.2 1.9E-05 4.1E-10 81.2 12.7 13 464-476 1247-1259(1282)
154 KOG1995 Conserved Zn-finger pr 98.2 1.8E-06 3.9E-11 79.6 4.5 83 118-200 65-155 (351)
155 PF08777 RRM_3: RNA binding mo 98.1 9.5E-06 2.1E-10 63.4 6.3 70 119-194 1-75 (105)
156 KOG0151 Predicted splicing reg 98.1 6.6E-06 1.4E-10 81.9 6.5 82 116-197 171-255 (877)
157 KOG1855 Predicted RNA-binding 98.0 0.0002 4.4E-09 67.6 15.2 94 264-357 202-308 (484)
158 PF08777 RRM_3: RNA binding mo 98.0 9.1E-06 2E-10 63.5 5.5 71 294-370 2-77 (105)
159 KOG4849 mRNA cleavage factor I 97.9 0.00063 1.4E-08 62.4 15.1 76 119-194 80-157 (498)
160 COG5175 MOT2 Transcriptional r 97.8 4.6E-05 9.9E-10 69.3 6.6 88 120-207 115-212 (480)
161 KOG2314 Translation initiation 97.7 0.00016 3.5E-09 70.4 8.3 76 294-370 59-141 (698)
162 KOG2416 Acinus (induces apopto 97.7 5E-05 1.1E-09 74.3 4.9 78 117-200 442-523 (718)
163 COG5175 MOT2 Transcriptional r 97.7 0.00022 4.8E-09 65.0 8.5 80 294-373 115-203 (480)
164 KOG4210 Nuclear localization s 97.6 3.6E-05 7.9E-10 71.7 2.9 79 120-199 185-264 (285)
165 KOG3973 Uncharacterized conser 97.6 0.0005 1.1E-08 63.0 10.0 13 479-491 449-461 (465)
166 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00019 4.2E-09 48.2 5.1 52 120-178 2-53 (53)
167 KOG3973 Uncharacterized conser 97.5 0.0014 3.1E-08 60.1 10.8 17 201-217 151-167 (465)
168 KOG0115 RNA-binding protein p5 97.4 0.00071 1.5E-08 59.7 8.4 88 174-265 7-94 (275)
169 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00047 1E-08 46.4 5.7 52 294-352 2-53 (53)
170 KOG2314 Translation initiation 97.4 0.00046 1E-08 67.4 7.6 80 117-197 56-142 (698)
171 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0018 4E-08 49.7 8.5 77 294-372 7-91 (100)
172 KOG3152 TBP-binding protein, a 97.3 0.00017 3.7E-09 63.4 2.5 71 294-364 75-157 (278)
173 KOG1996 mRNA splicing factor [ 97.3 0.00078 1.7E-08 60.4 6.7 78 294-371 282-365 (378)
174 KOG2202 U2 snRNP splicing fact 97.3 0.00014 3E-09 64.3 1.9 66 308-374 83-149 (260)
175 PF08952 DUF1866: Domain of un 97.2 0.0017 3.7E-08 52.9 7.7 57 308-373 51-107 (146)
176 KOG1855 Predicted RNA-binding 97.2 0.00037 8E-09 65.8 3.8 70 117-186 229-311 (484)
177 PF08952 DUF1866: Domain of un 97.1 0.0018 3.9E-08 52.8 6.9 74 116-198 24-106 (146)
178 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0023 5.1E-08 49.1 6.7 77 119-197 6-90 (100)
179 KOG2202 U2 snRNP splicing fact 97.0 0.00028 6E-09 62.4 1.3 63 134-197 83-146 (260)
180 KOG4676 Splicing factor, argin 96.9 0.0013 2.8E-08 61.5 5.2 77 294-371 8-87 (479)
181 KOG2416 Acinus (induces apopto 96.9 0.00096 2.1E-08 65.7 4.1 81 289-375 440-524 (718)
182 KOG0129 Predicted RNA-binding 96.8 0.0044 9.5E-08 60.4 8.1 64 117-180 368-432 (520)
183 KOG0115 RNA-binding protein p5 96.6 0.0058 1.3E-07 54.1 6.3 89 254-356 5-93 (275)
184 PF10309 DUF2414: Protein of u 96.5 0.016 3.4E-07 40.0 6.5 54 294-355 6-62 (62)
185 KOG1924 RhoA GTPase effector D 96.4 0.021 4.5E-07 58.5 9.9 12 170-181 208-219 (1102)
186 KOG1999 RNA polymerase II tran 96.4 0.017 3.6E-07 60.8 9.2 29 159-187 208-236 (1024)
187 KOG1924 RhoA GTPase effector D 96.4 0.024 5.3E-07 58.0 10.1 12 453-464 578-589 (1102)
188 PF10309 DUF2414: Protein of u 96.3 0.024 5.3E-07 39.0 6.5 54 120-181 6-62 (62)
189 KOG1996 mRNA splicing factor [ 96.2 0.012 2.7E-07 52.9 6.4 64 133-196 300-364 (378)
190 KOG2318 Uncharacterized conser 96.2 0.054 1.2E-06 53.7 10.8 130 116-280 171-305 (650)
191 PF08675 RNA_bind: RNA binding 96.1 0.03 6.6E-07 40.7 6.5 55 294-357 10-64 (87)
192 PF08675 RNA_bind: RNA binding 96.0 0.034 7.4E-07 40.4 6.6 59 116-183 6-64 (87)
193 PF03467 Smg4_UPF3: Smg-4/UPF3 95.8 0.01 2.2E-07 51.3 3.7 72 118-189 6-83 (176)
194 PF03467 Smg4_UPF3: Smg-4/UPF3 95.6 0.03 6.6E-07 48.4 6.2 80 294-373 8-98 (176)
195 KOG2591 c-Mpl binding protein, 95.5 0.024 5.2E-07 55.7 5.5 68 294-368 176-247 (684)
196 KOG2236 Uncharacterized conser 95.3 1.1 2.5E-05 43.6 15.7 14 244-257 260-273 (483)
197 PF15023 DUF4523: Protein of u 95.2 0.077 1.7E-06 42.8 6.4 72 293-372 86-161 (166)
198 KOG2193 IGF-II mRNA-binding pr 95.0 0.021 4.5E-07 54.2 3.3 78 294-377 2-80 (584)
199 KOG2591 c-Mpl binding protein, 94.9 0.043 9.2E-07 54.1 5.2 71 117-194 173-247 (684)
200 KOG0112 Large RNA-binding prot 94.9 0.038 8.2E-07 57.7 5.1 75 117-197 453-529 (975)
201 PF07576 BRAP2: BRCA1-associat 94.8 0.23 5E-06 39.0 8.2 68 119-188 13-81 (110)
202 KOG2135 Proteins containing th 94.6 0.022 4.7E-07 55.0 2.5 77 117-200 370-447 (526)
203 PF04847 Calcipressin: Calcipr 94.6 0.11 2.3E-06 45.1 6.5 64 306-375 8-73 (184)
204 KOG2135 Proteins containing th 94.2 0.031 6.7E-07 54.0 2.5 74 294-374 373-447 (526)
205 KOG2068 MOT2 transcription fac 94.2 0.023 4.9E-07 52.8 1.4 80 294-373 78-163 (327)
206 PF15023 DUF4523: Protein of u 94.1 0.36 7.9E-06 39.0 7.9 73 116-196 83-159 (166)
207 KOG2068 MOT2 transcription fac 94.1 0.024 5.2E-07 52.6 1.5 80 120-199 78-163 (327)
208 PF07576 BRAP2: BRCA1-associat 93.9 0.56 1.2E-05 36.9 8.5 67 294-362 14-81 (110)
209 KOG4285 Mitotic phosphoprotein 93.3 0.36 7.8E-06 44.1 7.4 78 294-379 198-276 (350)
210 PF11767 SET_assoc: Histone ly 93.0 0.42 9E-06 33.6 5.9 55 304-367 11-65 (66)
211 KOG1999 RNA polymerase II tran 92.6 1.1 2.3E-05 47.9 10.7 17 300-316 446-462 (1024)
212 PF04147 Nop14: Nop14-like fam 92.6 0.16 3.4E-06 55.4 5.0 13 132-144 427-439 (840)
213 PF03880 DbpA: DbpA RNA bindin 92.3 0.49 1.1E-05 34.3 5.8 59 303-370 11-74 (74)
214 KOG0804 Cytoplasmic Zn-finger 92.1 0.45 9.8E-06 46.0 6.7 70 117-188 72-142 (493)
215 PF05918 API5: Apoptosis inhib 92.0 0.045 9.7E-07 55.5 0.0 11 364-374 456-466 (556)
216 KOG4574 RNA-binding protein (c 92.0 0.11 2.3E-06 54.1 2.5 76 295-376 300-377 (1007)
217 PF04931 DNA_pol_phi: DNA poly 91.8 0.087 1.9E-06 57.3 1.9 7 136-142 741-747 (784)
218 PRK11634 ATP-dependent RNA hel 91.7 2.6 5.5E-05 44.7 12.5 61 303-372 497-562 (629)
219 PF04847 Calcipressin: Calcipr 91.3 0.55 1.2E-05 40.8 6.0 60 132-197 8-69 (184)
220 KOG2253 U1 snRNP complex, subu 91.3 0.19 4.1E-06 51.0 3.4 72 290-370 37-108 (668)
221 KOG4574 RNA-binding protein (c 91.3 0.14 3E-06 53.2 2.6 70 122-197 301-372 (1007)
222 KOG0804 Cytoplasmic Zn-finger 90.9 0.84 1.8E-05 44.3 7.2 68 293-362 74-142 (493)
223 KOG4285 Mitotic phosphoprotein 90.7 0.49 1.1E-05 43.3 5.1 72 119-198 197-269 (350)
224 PF03880 DbpA: DbpA RNA bindin 89.4 1.8 4E-05 31.3 6.5 59 129-196 11-74 (74)
225 KOG2253 U1 snRNP complex, subu 89.1 0.26 5.6E-06 50.0 2.4 70 117-195 38-107 (668)
226 PF07292 NID: Nmi/IFP 35 domai 89.0 0.55 1.2E-05 35.1 3.5 56 164-220 1-73 (88)
227 KOG2318 Uncharacterized conser 88.7 1.4 3.1E-05 44.1 7.1 78 293-370 174-305 (650)
228 KOG4483 Uncharacterized conser 88.4 1.3 2.7E-05 42.3 6.1 55 118-179 390-445 (528)
229 PF05285 SDA1: SDA1; InterPro 87.9 0.32 7E-06 46.6 2.1 8 131-138 190-197 (324)
230 COG4907 Predicted membrane pro 85.4 0.75 1.6E-05 44.7 3.1 21 307-327 488-513 (595)
231 PF11767 SET_assoc: Histone ly 84.2 3.8 8.3E-05 28.8 5.4 55 130-193 11-65 (66)
232 PF05918 API5: Apoptosis inhib 83.0 0.37 8.1E-06 49.1 0.0 12 482-493 544-555 (556)
233 KOG2295 C2H2 Zn-finger protein 82.6 0.29 6.2E-06 48.5 -1.0 73 116-188 228-300 (648)
234 PF10567 Nab6_mRNP_bdg: RNA-re 81.4 46 0.00099 30.9 15.5 62 118-179 14-82 (309)
235 KOG2044 5'-3' exonuclease HKE1 81.0 22 0.00048 37.7 11.5 16 245-260 633-648 (931)
236 PF11081 DUF2890: Protein of u 80.6 0.94 2E-05 38.9 1.5 14 1-14 1-14 (187)
237 KOG4019 Calcineurin-mediated s 79.5 2.2 4.8E-05 36.2 3.3 77 294-376 11-93 (193)
238 KOG2141 Protein involved in hi 78.2 0.85 1.8E-05 47.0 0.7 19 338-356 624-642 (822)
239 PF14111 DUF4283: Domain of un 75.4 4.2 9.2E-05 34.1 4.1 36 294-329 105-141 (153)
240 PF07292 NID: Nmi/IFP 35 domai 75.0 2.1 4.6E-05 32.0 1.9 68 246-314 1-73 (88)
241 PF05285 SDA1: SDA1; InterPro 72.0 2.9 6.2E-05 40.2 2.5 6 149-154 187-192 (324)
242 COG5638 Uncharacterized conser 71.9 21 0.00045 34.4 7.9 38 117-154 144-186 (622)
243 KOG0262 RNA polymerase I, larg 71.2 14 0.00031 41.0 7.4 13 126-138 1448-1460(1640)
244 KOG4410 5-formyltetrahydrofola 69.3 11 0.00024 34.4 5.3 47 293-345 330-377 (396)
245 KOG2038 CAATT-binding transcri 68.9 3.4 7.4E-05 43.2 2.3 16 124-139 960-975 (988)
246 PF02724 CDC45: CDC45-like pro 68.7 3.4 7.3E-05 43.6 2.4 7 363-369 544-550 (622)
247 KOG4410 5-formyltetrahydrofola 67.7 12 0.00027 34.1 5.3 47 119-171 330-377 (396)
248 KOG4483 Uncharacterized conser 65.7 13 0.00028 35.8 5.2 64 293-364 391-455 (528)
249 smart00596 PRE_C2HC PRE_C2HC d 64.7 16 0.00034 25.9 4.2 63 308-373 2-65 (69)
250 PHA03169 hypothetical protein; 63.6 41 0.00089 32.2 8.0 9 136-144 303-311 (413)
251 KOG2295 C2H2 Zn-finger protein 62.5 1.3 2.7E-05 44.2 -2.0 70 293-362 231-300 (648)
252 KOG2773 Apoptosis antagonizing 62.5 6.2 0.00013 38.6 2.6 9 361-369 445-453 (483)
253 KOG4365 Uncharacterized conser 61.3 1.4 3.1E-05 42.5 -1.8 80 294-374 4-83 (572)
254 PF07530 PRE_C2HC: Associated 61.0 26 0.00056 24.8 4.9 63 308-373 2-65 (68)
255 KOG2891 Surface glycoprotein [ 59.7 2.7 5.9E-05 37.9 -0.2 69 118-186 148-247 (445)
256 PF03468 XS: XS domain; Inter 59.1 12 0.00027 29.7 3.4 56 121-179 10-75 (116)
257 PF10567 Nab6_mRNP_bdg: RNA-re 58.7 16 0.00036 33.7 4.5 80 293-372 15-107 (309)
258 KOG0262 RNA polymerase I, larg 58.6 7.4 0.00016 43.0 2.6 11 309-319 1541-1551(1640)
259 COG4547 CobT Cobalamin biosynt 58.0 7 0.00015 38.4 2.1 13 183-195 423-435 (620)
260 KOG4019 Calcineurin-mediated s 55.0 10 0.00022 32.3 2.4 75 119-199 10-90 (193)
261 PF09073 BUD22: BUD22; InterP 53.5 9.1 0.0002 38.5 2.2 23 344-366 408-430 (432)
262 PF02714 DUF221: Domain of unk 53.3 24 0.00051 34.0 5.1 56 164-221 1-56 (325)
263 KOG1295 Nonsense-mediated deca 51.4 15 0.00032 35.3 3.1 69 118-186 6-77 (376)
264 TIGR00927 2A1904 K+-dependent 50.7 7 0.00015 42.4 1.0 11 120-130 905-915 (1096)
265 KOG0650 WD40 repeat nucleolar 50.3 21 0.00046 36.5 4.1 12 120-131 119-130 (733)
266 KOG0299 U3 snoRNP-associated p 49.2 15 0.00033 36.0 2.9 10 145-154 144-153 (479)
267 KOG4264 Nucleo-cytoplasmic pro 48.5 7.1 0.00015 38.9 0.5 8 337-344 443-450 (694)
268 KOG4264 Nucleo-cytoplasmic pro 48.4 18 0.0004 36.1 3.3 12 166-177 214-225 (694)
269 PF15513 DUF4651: Domain of un 48.2 45 0.00097 23.1 4.2 20 308-327 9-28 (62)
270 KOG2192 PolyC-binding hnRNP-K 47.6 1.2E+02 0.0027 27.6 8.0 12 212-223 98-109 (390)
271 PF12764 Gly-rich_Ago1: Glycin 47.5 34 0.00074 26.1 3.8 6 465-470 18-23 (104)
272 PF03468 XS: XS domain; Inter 47.3 12 0.00025 29.9 1.5 49 294-345 9-66 (116)
273 KOG4213 RNA-binding protein La 46.8 25 0.00053 30.0 3.4 55 120-179 112-168 (205)
274 PF07530 PRE_C2HC: Associated 45.4 42 0.00091 23.8 3.9 63 134-199 2-65 (68)
275 smart00596 PRE_C2HC PRE_C2HC d 43.0 44 0.00096 23.6 3.6 63 134-199 2-65 (69)
276 PF07423 DUF1510: Protein of u 42.6 17 0.00037 32.5 2.0 12 130-141 149-160 (217)
277 KOG1308 Hsp70-interacting prot 42.1 63 0.0014 31.0 5.6 18 305-322 216-233 (377)
278 TIGR00927 2A1904 K+-dependent 41.0 17 0.00037 39.6 2.0 8 162-169 932-939 (1096)
279 KOG1902 Putative signal transd 39.7 2.2E+02 0.0047 27.2 8.5 14 212-225 100-113 (441)
280 COG5638 Uncharacterized conser 39.1 80 0.0017 30.7 5.8 78 293-370 146-295 (622)
281 TIGR01651 CobT cobaltochelatas 38.9 20 0.00043 37.0 2.0 16 119-134 295-310 (600)
282 COG5593 Nucleic-acid-binding p 38.6 46 0.001 33.6 4.3 18 123-140 802-819 (821)
283 KOG2192 PolyC-binding hnRNP-K 38.3 2.4E+02 0.0051 25.8 8.3 7 356-362 192-198 (390)
284 COG4547 CobT Cobalamin biosynt 37.9 26 0.00056 34.7 2.5 13 120-132 317-329 (620)
285 PF11823 DUF3343: Protein of u 37.4 1.3E+02 0.0028 21.4 5.6 61 163-225 3-64 (73)
286 PF03276 Gag_spuma: Spumavirus 37.2 4.8E+02 0.01 26.8 12.7 10 357-366 427-436 (582)
287 KOG1295 Nonsense-mediated deca 36.8 47 0.001 32.1 4.0 67 294-360 8-77 (376)
288 KOG0020 Endoplasmic reticulum 35.9 1.2E+02 0.0026 30.6 6.6 37 106-143 323-359 (785)
289 PHA03169 hypothetical protein; 35.6 46 0.001 31.9 3.7 15 339-353 370-384 (413)
290 COG5180 PBP1 Protein interacti 35.5 1.9E+02 0.004 28.9 7.7 7 131-137 220-226 (654)
291 KOG1902 Putative signal transd 35.5 2.6E+02 0.0057 26.7 8.4 15 133-147 101-115 (441)
292 PF07423 DUF1510: Protein of u 35.0 29 0.00063 31.0 2.2 13 171-183 152-164 (217)
293 KOG4008 rRNA processing protei 34.4 34 0.00075 30.6 2.5 36 114-149 35-70 (261)
294 COG5193 LHP1 La protein, small 33.0 20 0.00043 34.7 0.9 60 294-353 175-244 (438)
295 KOG3168 U1 snRNP component [Tr 32.5 3.1E+02 0.0067 23.2 10.2 26 294-319 24-50 (177)
296 KOG4213 RNA-binding protein La 31.9 69 0.0015 27.4 3.8 71 294-369 112-183 (205)
297 COG1512 Beta-propeller domains 31.5 54 0.0012 30.5 3.5 9 301-309 120-128 (271)
298 KOG2147 Nucleolar protein invo 29.8 79 0.0017 33.5 4.5 18 127-144 388-409 (823)
299 KOG4365 Uncharacterized conser 29.8 11 0.00023 36.8 -1.4 77 120-197 4-80 (572)
300 TIGR02542 B_forsyth_147 Bacter 29.8 1.1E+02 0.0023 24.1 4.2 46 301-346 82-130 (145)
301 PF03439 Spt5-NGN: Early trans 29.3 1.6E+02 0.0036 21.7 5.2 36 319-359 33-68 (84)
302 PF11823 DUF3343: Protein of u 29.2 62 0.0013 23.1 2.8 27 337-363 3-29 (73)
303 PF11532 HnRNP_M: Heterogeneou 29.1 21 0.00045 20.2 0.2 8 486-493 17-24 (30)
304 PRK14548 50S ribosomal protein 28.2 1.9E+02 0.0041 21.5 5.2 56 296-354 23-80 (84)
305 COG5271 MDN1 AAA ATPase contai 27.3 66 0.0014 38.3 3.7 20 336-355 4409-4428(4600)
306 PF00183 HSP90: Hsp90 protein; 27.2 4.4 9.5E-05 41.8 -4.8 35 119-154 92-131 (531)
307 TIGR03636 L23_arch archaeal ri 26.5 2.3E+02 0.005 20.6 5.3 56 295-353 15-72 (77)
308 KOG0338 ATP-dependent RNA heli 26.4 26 0.00057 35.3 0.5 18 201-218 284-301 (691)
309 KOG1070 rRNA processing protei 26.3 23 0.00049 40.2 0.1 33 111-143 1449-1484(1710)
310 PF03896 TRAP_alpha: Transloco 26.1 30 0.00064 32.5 0.8 7 120-126 85-91 (285)
311 KOG4008 rRNA processing protei 26.1 53 0.0011 29.4 2.2 32 293-324 40-71 (261)
312 PF02714 DUF221: Domain of unk 25.5 1.4E+02 0.003 28.6 5.4 57 246-316 1-57 (325)
313 PRK11901 hypothetical protein; 25.1 2.2E+02 0.0048 27.2 6.2 67 113-184 239-307 (327)
314 PF04959 ARS2: Arsenite-resist 24.6 27 0.00059 31.1 0.3 11 354-364 114-124 (214)
315 KOG1980 Uncharacterized conser 24.0 82 0.0018 32.8 3.4 60 134-193 465-529 (754)
316 COG5193 LHP1 La protein, small 23.8 36 0.00079 33.0 0.9 62 118-179 173-244 (438)
317 KOG2567 Uncharacterized conser 23.0 2.2E+02 0.0048 24.0 5.1 7 342-348 82-88 (179)
318 KOG2891 Surface glycoprotein [ 22.6 1.4E+02 0.003 27.4 4.2 69 305-373 173-268 (445)
319 cd04908 ACT_Bt0572_1 N-termina 22.3 2.7E+02 0.0058 19.1 8.3 49 306-359 14-63 (66)
320 KOG4156 Claspin, protein media 21.9 33 0.0007 35.3 0.2 59 23-81 629-694 (1329)
321 PRK01178 rps24e 30S ribosomal 21.7 2.5E+02 0.0055 21.6 4.9 47 129-176 29-80 (99)
322 KOG1473 Nucleosome remodeling 21.3 1.5E+02 0.0033 33.2 4.9 25 201-225 264-288 (1414)
323 PF12782 Innate_immun: Inverte 20.9 4.9E+02 0.011 22.8 7.0 6 348-353 13-18 (311)
324 PF05470 eIF-3c_N: Eukaryotic 20.3 31 0.00068 36.1 -0.2 10 345-354 516-525 (595)
325 KOG0156 Cytochrome P450 CYP2 s 20.2 1.9E+02 0.0041 29.8 5.3 62 120-191 33-97 (489)
No 1
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.5e-58 Score=422.53 Aligned_cols=319 Identities=41% Similarity=0.654 Sum_probs=271.9
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcc-cCceEE
Q 011105 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIK 192 (493)
Q Consensus 114 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i-~g~~i~ 192 (493)
..++.+|.|||+.||.++.|++|.-||++.|+|-+++|++++.+|.+||||||+|++++.|+.||+.||+.+| .|+.|.
T Consensus 78 ~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 78 PPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 3458899999999999999999999999999999999999999999999999999999999999999999998 799999
Q ss_pred EecccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCC
Q 011105 193 CSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 272 (493)
Q Consensus 193 V~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~ 272 (493)
|..+..++.|||+|+|.++++++|++.+++.+++|..|.+..+|..+.++||||||+|.++.+|..|.++|-...+.+.+
T Consensus 158 vc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwg 237 (506)
T KOG0117|consen 158 VCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWG 237 (506)
T ss_pred EEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeecCCCCccc-ccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHH
Q 011105 273 NAPTVSWADPRNAES-SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351 (493)
Q Consensus 273 ~~~~~~~~~~~~~~~-~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a 351 (493)
+.+.|.|+.|..... ....+.+.|||+||+.++|++.|+++|++||.|++|+.++| ||||.|.+.++|.+|
T Consensus 238 n~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkA 309 (506)
T KOG0117|consen 238 NAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKA 309 (506)
T ss_pred CcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHH
Confidence 999999999987665 45667899999999999999999999999999999999865 999999999999999
Q ss_pred HHhcCCceecCeEEEEEecCCCCccCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCC-CCCCCCCCCCCCCC
Q 011105 352 LKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGM---VGGAYGALGAGY-VPAGFAQPMVYGRG 427 (493)
Q Consensus 352 ~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~g~~g~g~-~~~~~~~~~~~g~g 427 (493)
++.+|+..|+|..|.|.+|+|....+.......++.. .+.+.+...... +...++..++++ ..+.+.+|++|+++
T Consensus 310 m~~~ngkeldG~~iEvtLAKP~~k~k~~r~~~~~g~~-~~~~~~~~~p~~~~~~~~~~g~~~~g~~~~~y~~~P~~y~~~ 388 (506)
T KOG0117|consen 310 MKETNGKELDGSPIEVTLAKPVDKKKKERKAMRQGGA-YPTYYYFGPPVFYAIPPAPRGAGRGGGSRAGYYSQPGMYGTG 388 (506)
T ss_pred HHHhcCceecCceEEEEecCChhhhccchhhhhcccc-CCCccccCCcccCCCCCCCcCcccCCCCccccccCCccccCc
Confidence 9999999999999999999999876655322222222 111111111110 011122222222 33455567777776
Q ss_pred CCCC----CCccCCccCC
Q 011105 428 AAPG----GMAMLPMLLP 441 (493)
Q Consensus 428 ~~~~----~~~~~p~~~~ 441 (493)
..+. ++.|+|++.+
T Consensus 389 ~~~~~~~~~m~~~~~~l~ 406 (506)
T KOG0117|consen 389 HAPGLKGYGMHMAPGGLE 406 (506)
T ss_pred cccccccCCccccccccc
Confidence 6665 7778888766
No 2
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=2e-46 Score=372.85 Aligned_cols=252 Identities=33% Similarity=0.630 Sum_probs=228.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCccc-CceEEEe
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCS 194 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~-g~~i~V~ 194 (493)
+...++|||+|||+++++++|+++|++||.|.+|+|+++ .+++++|||||+|.+.++|.+||+.||+..|. ++.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 345689999999999999999999999999999999999 77999999999999999999999999999885 8899999
Q ss_pred cccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCC
Q 011105 195 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 274 (493)
Q Consensus 195 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 274 (493)
.+..+++|||+|||..+++++|.+.|..++..+..+.++..+...+++++||||+|.+..+|..|++.|....+.+.++.
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 99999999999999999999999999999876777777665566778999999999999999999999988778888999
Q ss_pred CeeeecCCCCcccc-cccccceEEEccCCCCCCHHHHHHHHhcC--CcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHH
Q 011105 275 PTVSWADPRNAESS-AASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351 (493)
Q Consensus 275 ~~~~~~~~~~~~~~-~~~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a 351 (493)
+.|.|+.+...... .....++|||+||++.+|+++|+++|+.| |.|++|.++ ++||||+|.+.++|.+|
T Consensus 214 I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKA 285 (578)
T ss_pred EEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHH
Confidence 99999988654432 23345889999999999999999999999 999999875 46999999999999999
Q ss_pred HHhcCCceecCeEEEEEecCCCCcc
Q 011105 352 LKNTEKYEIDGQVLDCSLAKPQADQ 376 (493)
Q Consensus 352 ~~~l~~~~~~g~~i~v~~a~~~~~~ 376 (493)
|..||+..|.|+.|+|.|+++....
T Consensus 286 i~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 286 MDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHHhCCCEECCEEEEEEEccCCCcc
Confidence 9999999999999999999987554
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=3.3e-45 Score=358.58 Aligned_cols=256 Identities=22% Similarity=0.406 Sum_probs=228.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
..++|||+|||+++|+++|+++|+.||+|.+|+|++++.+++++|||||+|.+.++|.+||+.|++..|.|++|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c------cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccC
Q 011105 198 A------KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 271 (493)
Q Consensus 198 ~------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~ 271 (493)
+ ..+|||+|||..+++++|+.+|..+|. |..+.++.+ ..++.+++||||+|.+.++|..|++.|++..+...
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~-i~~~~~~~~-~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQ-IITSRILSD-NVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCC-EEEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 3 347999999999999999999999998 999999887 45778999999999999999999999998766555
Q ss_pred CCCCeeeecCCCCccc----------------------------------------------------------------
Q 011105 272 DNAPTVSWADPRNAES---------------------------------------------------------------- 287 (493)
Q Consensus 272 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 287 (493)
...+.+.|+.......
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQH 239 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccc
Confidence 5566676664332000
Q ss_pred ------------------------ccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeC
Q 011105 288 ------------------------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343 (493)
Q Consensus 288 ------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~ 343 (493)
.......+|||+|||+.+++++|+++|++||.|.+|+|+++..++.++|||||+|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~ 319 (352)
T TIGR01661 240 AAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMT 319 (352)
T ss_pred ccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEEC
Confidence 00111236999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCceecCeEEEEEecCCCCc
Q 011105 344 ERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375 (493)
Q Consensus 344 ~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~ 375 (493)
+.++|.+||..|||..|.||.|+|.|+..+..
T Consensus 320 ~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 320 NYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999999999999999999999999988754
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.9e-40 Score=343.43 Aligned_cols=254 Identities=25% Similarity=0.430 Sum_probs=223.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
..++|||+|||.++++++|+++|+.||.|.+|+|+.+. +++++|||||+|.+.++|.+|++.+|+..+.++.|.|....
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~ 165 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFI 165 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccc
Confidence 35689999999999999999999999999999999885 48899999999999999999999999999999999986543
Q ss_pred c-----------cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCC
Q 011105 198 A-----------KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 266 (493)
Q Consensus 198 ~-----------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 266 (493)
. ..+|||+||+..+++++|+++|..||. |..+.++.+ ..+.++|||||.|.+.++|.+|+..+++.
T Consensus 166 ~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~-i~~~~i~~~--~~g~~~G~afV~F~~~e~A~~Av~~l~g~ 242 (562)
T TIGR01628 166 KKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGE-ITSAAVMKD--GSGRSRGFAFVNFEKHEDAAKAVEEMNGK 242 (562)
T ss_pred cccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCC-EEEEEEEEC--CCCCcccEEEEEECCHHHHHHHHHHhCCc
Confidence 2 246999999999999999999999998 999999987 36788999999999999999999999986
Q ss_pred CcccC--CCCCeeeecCCCCccc--------------ccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCC
Q 011105 267 KFKLD--DNAPTVSWADPRNAES--------------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 330 (493)
Q Consensus 267 ~~~~~--~~~~~~~~~~~~~~~~--------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 330 (493)
.+... +..+.+.++....... .......+|||+||++.+|+++|+++|+.||.|.+|+|+.+ .
T Consensus 243 ~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~ 321 (562)
T TIGR01628 243 KIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-E 321 (562)
T ss_pred EecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-C
Confidence 55422 6677777765543321 11234578999999999999999999999999999999999 5
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCCCcc
Q 011105 331 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 376 (493)
Q Consensus 331 ~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~ 376 (493)
++.++|||||+|.+.++|.+|+..||+..|.|++|.|.+|..+..+
T Consensus 322 ~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 322 KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 6777999999999999999999999999999999999999987544
No 5
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.6e-41 Score=288.15 Aligned_cols=254 Identities=24% Similarity=0.413 Sum_probs=232.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
..+.|.|.-||..+|+++|+.+|...|+|++|++++|+-+|.+.||+||.|-++++|.+||..||+..+..++|+|.+++
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccC
Q 011105 198 AK------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 271 (493)
Q Consensus 198 ~~------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~ 271 (493)
+. .+|||++||..++..+|..+|++||. |+..+++.+ +.++.++|.+||.|.....|+.|++.|++....-.
T Consensus 120 PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGr-IItSRiL~d-qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~ 197 (360)
T KOG0145|consen 120 PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGR-IITSRILVD-QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC 197 (360)
T ss_pred CChhhhcccceEEecCCccchHHHHHHHHHHhhh-hhhhhhhhh-cccceecceeEEEecchhHHHHHHHhccCCCCCCC
Confidence 75 47999999999999999999999999 888888888 78899999999999999999999999999877777
Q ss_pred CCCCeeeecCCCCccccc-----------------------------------------------------------ccc
Q 011105 272 DNAPTVSWADPRNAESSA-----------------------------------------------------------ASQ 292 (493)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~-----------------------------------------------------------~~~ 292 (493)
...|.|.++..+...... ...
T Consensus 198 tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~ 277 (360)
T KOG0145|consen 198 TEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGG 277 (360)
T ss_pred CCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCC
Confidence 777778777654322100 000
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
..||||-||..++++.-|+++|.+||.|..|+|++|..+.++|||+||++.+-++|..||..|||..+.+|.|.|+|...
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred C
Q 011105 373 Q 373 (493)
Q Consensus 373 ~ 373 (493)
+
T Consensus 358 k 358 (360)
T KOG0145|consen 358 K 358 (360)
T ss_pred C
Confidence 4
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.9e-38 Score=328.48 Aligned_cols=249 Identities=25% Similarity=0.449 Sum_probs=222.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecccc-
Q 011105 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA- 198 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~- 198 (493)
.+|||+|||+++|+++|+++|++||.|.+|+|+++..|++++|||||+|.+.++|.+||+.+++..|.|+.|+|.++..
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999988753
Q ss_pred -------cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccC
Q 011105 199 -------KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 271 (493)
Q Consensus 199 -------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~ 271 (493)
..+|||+||+.++++++|.++|+.||. |.+|.++.+ ..+++++||||+|.+.++|..|+..+++. .+.
T Consensus 81 ~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~-i~~~~i~~~--~~g~skg~afV~F~~~e~A~~Ai~~lng~--~~~ 155 (562)
T TIGR01628 81 PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGN-ILSCKVATD--ENGKSRGYGFVHFEKEESAKAAIQKVNGM--LLN 155 (562)
T ss_pred ccccccCCCceEEcCCCccCCHHHHHHHHHhcCC-cceeEeeec--CCCCcccEEEEEECCHHHHHHHHHHhccc--Eec
Confidence 247999999999999999999999998 999999986 46789999999999999999999999874 556
Q ss_pred CCCCeeeecCCCCcc-cccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHH
Q 011105 272 DNAPTVSWADPRNAE-SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350 (493)
Q Consensus 272 ~~~~~~~~~~~~~~~-~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~ 350 (493)
++.+.+......... .......++|||+||++++|+++|+++|+.||.|.++.++++. ++.++|||||+|.+.++|.+
T Consensus 156 ~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~ 234 (562)
T TIGR01628 156 DKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAK 234 (562)
T ss_pred CceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHH
Confidence 777777665544333 1233445789999999999999999999999999999999886 45669999999999999999
Q ss_pred HHHhcCCceec----CeEEEEEecCCCC
Q 011105 351 ALKNTEKYEID----GQVLDCSLAKPQA 374 (493)
Q Consensus 351 a~~~l~~~~~~----g~~i~v~~a~~~~ 374 (493)
|+..||+..|. |+.|.|.++..+.
T Consensus 235 Av~~l~g~~i~~~~~g~~l~v~~a~~k~ 262 (562)
T TIGR01628 235 AVEEMNGKKIGLAKEGKKLYVGRAQKRA 262 (562)
T ss_pred HHHHhCCcEecccccceeeEeecccChh
Confidence 99999999999 9999998876554
No 7
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-38 Score=268.46 Aligned_cols=227 Identities=22% Similarity=0.439 Sum_probs=191.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHH-HhCCCcccCceEEEec
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE-ELNSCELKGKKIKCSA 195 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~-~l~~~~i~g~~i~V~~ 195 (493)
...+||||+||..++||+-|..||++.|.|+.|+|+.+.- + ...|.. ....+....+
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~-~---------------v~wa~~p~nQsk~t~~~------ 61 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL-K---------------VNWATAPGNQSKPTSNQ------ 61 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh-c---------------cccccCcccCCCCcccc------
Confidence 4568999999999999999999999999999999988721 0 000000 0111111111
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCC
Q 011105 196 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 275 (493)
Q Consensus 196 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 275 (493)
.-.+||+.|...++.+.|++.|.+||+ |.++++++| ..+++++||+||.|-+.++|+.|+..|++. .+..|.|
T Consensus 62 ---hfhvfvgdls~eI~~e~lr~aF~pFGe-vS~akvirD-~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq--WlG~R~I 134 (321)
T KOG0148|consen 62 ---HFHVFVGDLSPEIDNEKLREAFAPFGE-VSDAKVIRD-MNTGKSKGYGFVSFPNKEDAENAIQQMNGQ--WLGRRTI 134 (321)
T ss_pred ---ceeEEehhcchhcchHHHHHHhccccc-cccceEeec-ccCCcccceeEEeccchHHHHHHHHHhCCe--eecccee
Confidence 335799999999999999999999999 999999999 789999999999999999999999999984 6889999
Q ss_pred eeeecCCCCccc------------ccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeC
Q 011105 276 TVSWADPRNAES------------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343 (493)
Q Consensus 276 ~~~~~~~~~~~~------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~ 343 (493)
+-+|+..+.... +.....++|||+||+..+|++.|++.|+.||.|..|+|++++ ||+||.|.
T Consensus 135 RTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~ 208 (321)
T KOG0148|consen 135 RTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFE 208 (321)
T ss_pred eccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEec
Confidence 999997664321 333446899999999999999999999999999999999984 89999999
Q ss_pred CHHHHHHHHHhcCCceecCeEEEEEecCCCCccCC
Q 011105 344 ERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378 (493)
Q Consensus 344 ~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~~~ 378 (493)
+.++|..||..+|+..|.|+.++|.|.+.......
T Consensus 209 tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~~ 243 (321)
T KOG0148|consen 209 TKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGIN 243 (321)
T ss_pred chhhHHHHHHHhcCceeCceEEEEeccccCCCCCC
Confidence 99999999999999999999999999987755443
No 8
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=285.45 Aligned_cols=252 Identities=25% Similarity=0.493 Sum_probs=226.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecccc
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~ 198 (493)
+.||||++||++++.++|.++|+.+|+|..|.++.++.++.++||+||+|.-.+++++|+..+++..|.||.|.|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999988752
Q ss_pred --------------------------------cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceE
Q 011105 199 --------------------------------KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFA 246 (493)
Q Consensus 199 --------------------------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~ 246 (493)
+-.|.|+|||+.+...+|..+|+.||. |..|.|.+. ..++-+|||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~-V~Ei~IP~k--~dgklcGFa 161 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGK-VVEIVIPRK--KDGKLCGFA 161 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcce-EEEEEcccC--CCCCccceE
Confidence 236899999999999999999999999 999999964 556667999
Q ss_pred EEeeCCHHHHHHHHHHcCCCCcccCCCCCeeeecCCCCcccccc-----------------c---c--------------
Q 011105 247 FIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA-----------------S---Q-------------- 292 (493)
Q Consensus 247 fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~---~-------------- 292 (493)
||+|....+|..|+..+++ ..+.++.+.|.|+-+........ . .
T Consensus 162 FV~fk~~~dA~~Al~~~N~--~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~ 239 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEFFNG--NKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDS 239 (678)
T ss_pred EEEEeeHHHHHHHHHhccC--ceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccc
Confidence 9999999999999999997 57889999999986543211100 0 0
Q ss_pred ----------------------------------------------------cceEEEccCCCCCCHHHHHHHHhcCCcE
Q 011105 293 ----------------------------------------------------VKALYVKNLPKDITQDRLKELFAHHGKI 320 (493)
Q Consensus 293 ----------------------------------------------------~~~l~v~nl~~~~t~~~l~~~f~~~G~v 320 (493)
..+|||+|||+++|++.|.+.|++||.|
T Consensus 240 edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v 319 (678)
T KOG0127|consen 240 EDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEV 319 (678)
T ss_pred cccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccc
Confidence 3799999999999999999999999999
Q ss_pred EEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhc-----CC-ceecCeEEEEEecCCCCc
Q 011105 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT-----EK-YEIDGQVLDCSLAKPQAD 375 (493)
Q Consensus 321 ~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l-----~~-~~~~g~~i~v~~a~~~~~ 375 (493)
.++.|+.++.|+.++|.|||.|.+..+|.+||.+. .+ ..|.||.|.|.+|-++..
T Consensus 320 ~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 320 KYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred eeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHH
Confidence 99999999999999999999999999999999976 23 789999999999988753
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=9.7e-36 Score=300.15 Aligned_cols=240 Identities=20% Similarity=0.250 Sum_probs=204.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHh--CCCcccCceEEEec
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL--NSCELKGKKIKCSA 195 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l--~~~~i~g~~i~V~~ 195 (493)
.+++|||+|||+++|+++|+++|++||.|.+|.|+++ ++||||+|.+.++|.+||+.+ ++..|.|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3689999999999999999999999999999999863 479999999999999999864 67889999999988
Q ss_pred cccc------------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHH
Q 011105 196 AQAK------------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257 (493)
Q Consensus 196 ~~~~------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 257 (493)
+... ..|+|.||+..+++++|.++|+.||. |..|.++++. ..++|||+|.+.++|.
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~-V~~v~i~~~~-----~~~~afVef~~~~~A~ 148 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGK-VLRIVTFTKN-----NVFQALVEFESVNSAQ 148 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCC-EEEEEEEecC-----CceEEEEEECCHHHHH
Confidence 7421 15899999999999999999999999 9999988752 2468999999999999
Q ss_pred HHHHHcCCCCcccCCCCCeeeecCCCCcc--------------------c------------------------------
Q 011105 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAE--------------------S------------------------------ 287 (493)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~------------------------------ 287 (493)
+|++.|++..+.-..+.+.+.|+.+.... .
T Consensus 149 ~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 228 (481)
T TIGR01649 149 HAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSH 228 (481)
T ss_pred HHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccC
Confidence 99999999876544445555444321100 0
Q ss_pred -----------------------------------------ccccccceEEEccCCC-CCCHHHHHHHHhcCCcEEEEEe
Q 011105 288 -----------------------------------------SAASQVKALYVKNLPK-DITQDRLKELFAHHGKITKVVI 325 (493)
Q Consensus 288 -----------------------------------------~~~~~~~~l~v~nl~~-~~t~~~l~~~f~~~G~v~~v~i 325 (493)
.....+++|||+||++ .+|+++|+++|+.||.|.+|+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki 308 (481)
T TIGR01649 229 GGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKF 308 (481)
T ss_pred CCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 0011357999999998 6999999999999999999999
Q ss_pred CCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCCC
Q 011105 326 PPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 374 (493)
Q Consensus 326 ~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~ 374 (493)
++++ +|||||+|.+.++|..||..||+..|.|++|+|.+++...
T Consensus 309 ~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 309 MKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred EeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 9874 6899999999999999999999999999999999987654
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=4.2e-35 Score=296.94 Aligned_cols=249 Identities=21% Similarity=0.373 Sum_probs=215.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+.+++++|+++|+.||.|..|+|+.++.+++++|||||+|.+.++|.+||. |++..|.|+.|.|..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457899999999999999999999999999999999999999999999999999999999997 999999999999987
Q ss_pred ccc------------------cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHH
Q 011105 196 AQA------------------KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257 (493)
Q Consensus 196 ~~~------------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 257 (493)
+.. ..+|||+|||..+++++|..+|..||. |..|.++.+ ..++.+++||||+|.+.++|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~-i~~v~~~~d-~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGD-IEDVQLHRD-PETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC-eEEEEEEEc-CCCCccceEEEEEECCHHHHH
Confidence 531 257999999999999999999999998 999999988 456789999999999999999
Q ss_pred HHHHHcCCCCcccCCCCCeeeecCCCCcc---------------------------------------------------
Q 011105 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAE--------------------------------------------------- 286 (493)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 286 (493)
.|+..|++ +.+.++.+.|.|+......
T Consensus 243 ~A~~~l~g--~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T TIGR01622 243 EALEVMNG--FELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIA 320 (457)
T ss_pred HHHHhcCC--cEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhh
Confidence 99999998 5667888888884311000
Q ss_pred ---------------------------------c--ccccccceEEEccCCCCCC----------HHHHHHHHhcCCcEE
Q 011105 287 ---------------------------------S--SAASQVKALYVKNLPKDIT----------QDRLKELFAHHGKIT 321 (493)
Q Consensus 287 ---------------------------------~--~~~~~~~~l~v~nl~~~~t----------~~~l~~~f~~~G~v~ 321 (493)
. .....+.+|+|.||....+ .++|++.|++||.|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~ 400 (457)
T TIGR01622 321 LMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVV 400 (457)
T ss_pred hhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCee
Confidence 0 0113357899999954433 368999999999999
Q ss_pred EEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 322 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 322 ~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
.|.|.... ..|++||+|.++++|.+|++.|||..|+|+.|.|.+....
T Consensus 401 ~v~v~~~~----~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 401 HIYVDTKN----SAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred EEEEeCCC----CceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 99997543 3699999999999999999999999999999999998654
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=6.1e-35 Score=277.58 Aligned_cols=173 Identities=29% Similarity=0.483 Sum_probs=156.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|+.||.|++|+|+.+..+++++|||||+|.+.++|.+||+.|++..|.+++|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCC
Q 011105 196 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 275 (493)
Q Consensus 196 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 275 (493)
+.+...
T Consensus 184 a~p~~~-------------------------------------------------------------------------- 189 (346)
T TIGR01659 184 ARPGGE-------------------------------------------------------------------------- 189 (346)
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 643110
Q ss_pred eeeecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 011105 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355 (493)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l 355 (493)
....++|||.|||+.+|+++|+++|++||.|+.|+|++++.++.++|||||+|.+.++|.+||+.|
T Consensus 190 --------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 190 --------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred --------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 000168999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceecC--eEEEEEecCCCCcc
Q 011105 356 EKYEIDG--QVLDCSLAKPQADQ 376 (493)
Q Consensus 356 ~~~~~~g--~~i~v~~a~~~~~~ 376 (493)
|+..|.+ ++|+|.++......
T Consensus 256 ng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 256 NNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred CCCccCCCceeEEEEECCccccc
Confidence 9999876 78999999876443
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=7.6e-34 Score=291.90 Aligned_cols=246 Identities=24% Similarity=0.415 Sum_probs=202.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc------------CCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCC
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSI------------GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSC 184 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~------------G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~ 184 (493)
...++|||+|||+.+|+++|++||..+ +.|..+.+ .+.+|||||+|.+.++|..||. |++.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~g~ 245 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LDSI 245 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CCCe
Confidence 356799999999999999999999975 33444444 3467899999999999999996 9999
Q ss_pred cccCceEEEeccc-----------------------------------ccccccccCCCCCCCHHHHHHHHHhhCCCeeE
Q 011105 185 ELKGKKIKCSAAQ-----------------------------------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 229 (493)
Q Consensus 185 ~i~g~~i~V~~~~-----------------------------------~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~ 229 (493)
.|.|+.|.|.... ...+|||+|||..+++++|.++|+.||. |..
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~ 324 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD-LKA 324 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eeE
Confidence 9999999986321 1247999999999999999999999998 999
Q ss_pred EEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCeeeecCCCCccc----------------------
Q 011105 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES---------------------- 287 (493)
Q Consensus 230 ~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 287 (493)
+.++.+ ..++.++|||||+|.+...|..|+..|++. .+.++.+.|.++.......
T Consensus 325 ~~~~~~-~~~g~~~g~afv~f~~~~~a~~A~~~l~g~--~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (509)
T TIGR01642 325 FNLIKD-IATGLSKGYAFCEYKDPSVTDVAIAALNGK--DTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSI 401 (509)
T ss_pred EEEEec-CCCCCcCeEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEECccCCCCCCccccccccccccccccchhhh
Confidence 999988 567899999999999999999999999874 4567777777764321100
Q ss_pred --ccccccceEEEccCCCCC----------CHHHHHHHHhcCCcEEEEEeCCCC---CCCCcccEEEEEeCCHHHHHHHH
Q 011105 288 --SAASQVKALYVKNLPKDI----------TQDRLKELFAHHGKITKVVIPPAK---PGQERSRYGFVHFAERSSAMKAL 352 (493)
Q Consensus 288 --~~~~~~~~l~v~nl~~~~----------t~~~l~~~f~~~G~v~~v~i~~~~---~~~~~~g~~fV~f~~~~~a~~a~ 352 (493)
.....+.+|+|.||.... ..++|+++|++||.|+.|.|+++. .+....|++||+|.+.++|.+||
T Consensus 402 ~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~ 481 (509)
T TIGR01642 402 LQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAM 481 (509)
T ss_pred ccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHH
Confidence 001235789999996421 236799999999999999998753 23445799999999999999999
Q ss_pred HhcCCceecCeEEEEEecCCC
Q 011105 353 KNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 353 ~~l~~~~~~g~~i~v~~a~~~ 373 (493)
..|||..|+|+.|.|.|....
T Consensus 482 ~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 482 EGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred HHcCCCEECCeEEEEEEeCHH
Confidence 999999999999999997653
No 13
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.2e-34 Score=262.88 Aligned_cols=253 Identities=23% Similarity=0.444 Sum_probs=224.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCc-ccC--ceEEEec
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE-LKG--KKIKCSA 195 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~-i~g--~~i~V~~ 195 (493)
.-+|||+-||..++|.+|+.+|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+.+||... |.| .+|.|++
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 3469999999999999999999999999999999999999999999999999999999999998765 544 6889988
Q ss_pred ccc-------cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCc
Q 011105 196 AQA-------KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 268 (493)
Q Consensus 196 ~~~-------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~ 268 (493)
+.. .++|||+-|+..+++.+|+++|.+||. |.+|.|+++ ..+.+|||+||.|.+.+.|..|++.|++...
T Consensus 114 Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~-Ied~~ilrd--~~~~sRGcaFV~fstke~A~~Aika~ng~~t 190 (510)
T KOG0144|consen 114 ADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGH-IEDCYILRD--PDGLSRGCAFVKFSTKEMAVAAIKALNGTQT 190 (510)
T ss_pred cchhhhccccchhhhhhhccccccHHHHHHHHHhhCc-cchhhheec--ccccccceeEEEEehHHHHHHHHHhhcccee
Confidence 864 457899999999999999999999998 999999997 4688999999999999999999999998543
Q ss_pred cc-CCCCCeeeecCCCCcccccccc-------------------------------------------------------
Q 011105 269 KL-DDNAPTVSWADPRNAESSAASQ------------------------------------------------------- 292 (493)
Q Consensus 269 ~~-~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 292 (493)
.- ....+.|.|+++..........
T Consensus 191 meGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~ 270 (510)
T KOG0144|consen 191 MEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLN 270 (510)
T ss_pred eccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcc
Confidence 32 3346777888766543311110
Q ss_pred --------------------------------------------------------------------------------
Q 011105 293 -------------------------------------------------------------------------------- 292 (493)
Q Consensus 293 -------------------------------------------------------------------------------- 292 (493)
T Consensus 271 a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~ 350 (510)
T KOG0144|consen 271 ATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGG 350 (510)
T ss_pred hhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccc
Confidence
Q ss_pred -------------------------------------------------------------------------cceEEEc
Q 011105 293 -------------------------------------------------------------------------VKALYVK 299 (493)
Q Consensus 293 -------------------------------------------------------------------------~~~l~v~ 299 (493)
...|||.
T Consensus 351 ~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiy 430 (510)
T KOG0144|consen 351 MAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIY 430 (510)
T ss_pred cccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeee
Confidence 4789999
Q ss_pred cCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCCC
Q 011105 300 NLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 374 (493)
Q Consensus 300 nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~ 374 (493)
+||.+.-+.+|-..|..||.|...++..|+.++.++.|+||+|++..+|..||..|||+.|..++|+|.+...+.
T Consensus 431 hlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 431 HLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred eCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987654
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2.7e-33 Score=282.44 Aligned_cols=240 Identities=20% Similarity=0.263 Sum_probs=201.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccC--ceEEEecc
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG--KKIKCSAA 196 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g--~~i~V~~~ 196 (493)
-.+|||.||++.+|+++|+++|+.||.|.+|.|+++.. +++|||+|.+.++|.+|++.||+..|.+ +.|+|.++
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 35799999999999999999999999999999987642 4799999999999999999999999965 35555443
Q ss_pred c-------------------------------------------------------------------------------
Q 011105 197 Q------------------------------------------------------------------------------- 197 (493)
Q Consensus 197 ~------------------------------------------------------------------------------- 197 (493)
+
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence 2
Q ss_pred ----------------------ccccccccCCCC-CCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHH
Q 011105 198 ----------------------AKHRLFIGNVPR-NWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHA 254 (493)
Q Consensus 198 ----------------------~~~~l~v~~l~~-~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~ 254 (493)
+..+|||+||+. .+++++|+.+|..||. |..|+++++ .++||||+|.+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~-V~~vki~~~------~~g~afV~f~~~~ 324 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGN-VERVKFMKN------KKETALIEMADPY 324 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCC-eEEEEEEeC------CCCEEEEEECCHH
Confidence 113689999998 6999999999999998 999999986 3689999999999
Q ss_pred HHHHHHHHcCCCCcccCCCCCeeeecCCCCccc---------------------------------ccccccceEEEccC
Q 011105 255 CAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES---------------------------------SAASQVKALYVKNL 301 (493)
Q Consensus 255 ~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~l~v~nl 301 (493)
+|..|+..|++. .+.++.+.|.++....... .....+.+|||+||
T Consensus 325 ~A~~Ai~~lng~--~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NL 402 (481)
T TIGR01649 325 QAQLALTHLNGV--KLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNI 402 (481)
T ss_pred HHHHHHHHhCCC--EECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecC
Confidence 999999999985 4567888887764321100 00123468999999
Q ss_pred CCCCCHHHHHHHHhcCCc--EEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeE------EEEEecCCC
Q 011105 302 PKDITQDRLKELFAHHGK--ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV------LDCSLAKPQ 373 (493)
Q Consensus 302 ~~~~t~~~l~~~f~~~G~--v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~------i~v~~a~~~ 373 (493)
|+.+|+++|+++|+.||. |..|++...... ++++|||+|.+.++|.+||..||++.|.++. |+|+|++++
T Consensus 403 p~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~--~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 403 PLSVSEEDLKELFAENGVHKVKKFKFFPKDNE--RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCCCHHHHHHHHHhcCCccceEEEEecCCCC--cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 999999999999999998 888988765433 3789999999999999999999999999984 999999875
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=3.9e-33 Score=278.09 Aligned_cols=147 Identities=24% Similarity=0.481 Sum_probs=137.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
...++|||+|||+++++++|+++|..||.|.+|+|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred c-----------------ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHH
Q 011105 197 Q-----------------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 259 (493)
Q Consensus 197 ~-----------------~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 259 (493)
. ...+|||+||+..+++++|+++|+.||. |..++++++ ..+++++|||||+|.+.++|..|
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~-I~svrl~~D-~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARA-PTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC-eeEEEEEec-CCCCCcCCeEEEEECCHHHHHHH
Confidence 3 1257999999999999999999999999 999999998 45788999999999999999999
Q ss_pred HHHcCC
Q 011105 260 RQKMSN 265 (493)
Q Consensus 260 ~~~~~~ 265 (493)
+..|++
T Consensus 263 I~amNg 268 (612)
T TIGR01645 263 IASMNL 268 (612)
T ss_pred HHHhCC
Confidence 999985
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6.3e-29 Score=237.47 Aligned_cols=242 Identities=24% Similarity=0.424 Sum_probs=215.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccccc
Q 011105 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~~ 199 (493)
..|||+ +++|+..|.++|+.+|+|++|+++++. | +.|||||.|.++++|.+|++.+|-..|.|++|+|.++...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 999999999999999999999999998 6 9999999999999999999999999999999999998754
Q ss_pred -ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCeee
Q 011105 200 -HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 278 (493)
Q Consensus 200 -~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 278 (493)
..+||.||++.++...|.++|+.||. |.+|++..+... +++| ||+|.+...|.+|+..+++. .+.+..+.+.
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~-ilS~kv~~~~~g---~kg~-FV~f~~e~~a~~ai~~~ng~--ll~~kki~vg 148 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGN-ILSCKVATDENG---SKGY-FVQFESEESAKKAIEKLNGM--LLNGKKIYVG 148 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcC-eeEEEEEEcCCC---ceee-EEEeCCHHHHHHHHHHhcCc--ccCCCeeEEe
Confidence 34899999999999999999999999 999999997433 9999 99999999999999999984 4556666666
Q ss_pred ecCCCCccc----ccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHh
Q 011105 279 WADPRNAES----SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354 (493)
Q Consensus 279 ~~~~~~~~~----~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 354 (493)
......... ........++|.|++..++++.|..+|..+|.|..+.++.+..+. +++|+||.|.++++|..|+..
T Consensus 149 ~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~-~~~~gfv~f~~~e~a~~av~~ 227 (369)
T KOG0123|consen 149 LFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGK-SKGFGFVNFENPEDAKKAVET 227 (369)
T ss_pred eccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCC-CCCccceeecChhHHHHHHHh
Confidence 555433322 123335789999999999999999999999999999999998776 699999999999999999999
Q ss_pred cCCceecCeEEEEEecCCCCc
Q 011105 355 TEKYEIDGQVLDCSLAKPQAD 375 (493)
Q Consensus 355 l~~~~~~g~~i~v~~a~~~~~ 375 (493)
||+..+.+..+.|..+..+..
T Consensus 228 l~~~~~~~~~~~V~~aqkk~e 248 (369)
T KOG0123|consen 228 LNGKIFGDKELYVGRAQKKSE 248 (369)
T ss_pred ccCCcCCccceeecccccchh
Confidence 999999999999999887543
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.3e-29 Score=237.97 Aligned_cols=250 Identities=25% Similarity=0.482 Sum_probs=216.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
..+.|||.||+.+++..+|.++|+.||.|++|++..+.+ | ++|| ||+|.+.+.|++|++.+|+..+.++.|.|....
T Consensus 75 d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 75 DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 334499999999999999999999999999999999986 5 9999 999999999999999999999999999997654
Q ss_pred cc--------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHc
Q 011105 198 AK--------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 263 (493)
Q Consensus 198 ~~--------------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 263 (493)
.+ ..+++.+++..++...|..+|..+|. |.++.++.+ ..+.+++|+||.|.+.++|..|+..+
T Consensus 152 ~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~-i~s~~v~~~--~~g~~~~~gfv~f~~~e~a~~av~~l 228 (369)
T KOG0123|consen 152 RKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGS-ITSVAVMRD--SIGKSKGFGFVNFENPEDAKKAVETL 228 (369)
T ss_pred chhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCc-ceEEEEeec--CCCCCCCccceeecChhHHHHHHHhc
Confidence 32 35799999999999999999999999 999999986 45669999999999999999999999
Q ss_pred CCCCcccCCCCCeeeecCCCCccc--------------ccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCC
Q 011105 264 SNPKFKLDDNAPTVSWADPRNAES--------------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 329 (493)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~ 329 (493)
++..+. +..+.+..+....... ........|||.||+..++.+.|+++|+.||.|..++|+.+.
T Consensus 229 ~~~~~~--~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~ 306 (369)
T KOG0123|consen 229 NGKIFG--DKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE 306 (369)
T ss_pred cCCcCC--ccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc
Confidence 987665 4444554444421111 223346899999999999999999999999999999999987
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCCCcc
Q 011105 330 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 376 (493)
Q Consensus 330 ~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~ 376 (493)
.+.. +||+||.|.+.++|.+|+..+|+..+.+++|.|.++.....+
T Consensus 307 ~g~s-kG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r 352 (369)
T KOG0123|consen 307 NGKS-KGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDR 352 (369)
T ss_pred CCCc-cceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccc
Confidence 6544 999999999999999999999999999999999999854443
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3.7e-28 Score=228.40 Aligned_cols=234 Identities=25% Similarity=0.417 Sum_probs=194.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecccc
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~ 198 (493)
..+|.|+||||.|...+|+.+|+.||.|..|.|.+.++++.+ |||||+|....+|..||+.+|+..|.||+|.|.|+.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 678999999999999999999999999999999988886666 9999999999999999999999999999999999851
Q ss_pred c-------------------------------------------------------------------------------
Q 011105 199 K------------------------------------------------------------------------------- 199 (493)
Q Consensus 199 ~------------------------------------------------------------------------------- 199 (493)
+
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 1
Q ss_pred -----------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHH
Q 011105 200 -----------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 262 (493)
Q Consensus 200 -----------------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 262 (493)
.+|||+|||+++++++|..+|+.||+ |..+.++.+ ..++.+.|.|||.|.+...+..|+..
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~-v~ya~iV~~-k~T~~skGtAFv~Fkt~~~~~~ci~~ 353 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGE-VKYAIIVKD-KDTGHSKGTAFVKFKTQIAAQNCIEA 353 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhcc-ceeEEEEec-cCCCCcccceEEEeccHHHHHHHHHh
Confidence 17999999999999999999999999 999999998 67999999999999999999999988
Q ss_pred cC----CCCcccCCCCCeeeecCCCCcccccccc----------------------------------------------
Q 011105 263 MS----NPKFKLDDNAPTVSWADPRNAESSAASQ---------------------------------------------- 292 (493)
Q Consensus 263 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 292 (493)
.. ...+.+.++.+.+..+.++.........
T Consensus 354 Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~ 433 (678)
T KOG0127|consen 354 ASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKR 433 (678)
T ss_pred cCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHH
Confidence 72 3336778888888877665432211000
Q ss_pred -----------cceEEEccCCCCCCHHHHHHHHhcC-----CcEE-EEEeCCCC---CCCCcccEEEEEeCCHHHHHHHH
Q 011105 293 -----------VKALYVKNLPKDITQDRLKELFAHH-----GKIT-KVVIPPAK---PGQERSRYGFVHFAERSSAMKAL 352 (493)
Q Consensus 293 -----------~~~l~v~nl~~~~t~~~l~~~f~~~-----G~v~-~v~i~~~~---~~~~~~g~~fV~f~~~~~a~~a~ 352 (493)
.++|.|+|||..++...|..+.... +.|. -|+.+... ..+.+.||+||.|.-++.|.+|+
T Consensus 434 k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkal 513 (678)
T KOG0127|consen 434 KKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKAL 513 (678)
T ss_pred HhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhh
Confidence 3779999999999999998887532 2222 23333322 23556899999999999999999
Q ss_pred Hhc
Q 011105 353 KNT 355 (493)
Q Consensus 353 ~~l 355 (493)
..+
T Consensus 514 k~~ 516 (678)
T KOG0127|consen 514 KVL 516 (678)
T ss_pred hcc
Confidence 864
No 19
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=7.3e-27 Score=209.12 Aligned_cols=247 Identities=24% Similarity=0.427 Sum_probs=202.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc-
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ- 197 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~- 197 (493)
-|+|||+.|.+.+.|+.|+..|..||+|.+|.+.-|+.|++.+|||||+|+-++.|..|++.+|+..+.||.|+|....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred ----------------ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHH
Q 011105 198 ----------------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261 (493)
Q Consensus 198 ----------------~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 261 (493)
.-++|||..+.+++++++|+..|+.||+ |..|.+.+.| ....++||+|++|.+..+...|+.
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~-I~~C~LAr~p-t~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARAP-TGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcc-eeeEEeeccC-CCCCccceeeEEeccccchHHHhh
Confidence 2358999999999999999999999999 9999999984 567889999999999999999988
Q ss_pred HcCCCCcccCCCCCeeeecCCCCccc------cc----------------------------------------------
Q 011105 262 KMSNPKFKLDDNAPTVSWADPRNAES------SA---------------------------------------------- 289 (493)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---------------------------------------------- 289 (493)
.||- +.+++..++|..+....... ..
T Consensus 271 sMNl--FDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p 348 (544)
T KOG0124|consen 271 SMNL--FDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQP 348 (544)
T ss_pred hcch--hhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCC
Confidence 8773 23333322222211000000 00
Q ss_pred --------------------------------------------------------------------------------
Q 011105 290 -------------------------------------------------------------------------------- 289 (493)
Q Consensus 290 -------------------------------------------------------------------------------- 289 (493)
T Consensus 349 ~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~ 428 (544)
T KOG0124|consen 349 LGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSIS 428 (544)
T ss_pred CCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCcccc
Confidence
Q ss_pred --------------ccccceEEEccC--CCCCCH---HHHHHHHhcCCcEEEEEeCCCCCCCCc----ccEEEEEeCCHH
Q 011105 290 --------------ASQVKALYVKNL--PKDITQ---DRLKELFAHHGKITKVVIPPAKPGQER----SRYGFVHFAERS 346 (493)
Q Consensus 290 --------------~~~~~~l~v~nl--~~~~t~---~~l~~~f~~~G~v~~v~i~~~~~~~~~----~g~~fV~f~~~~ 346 (493)
...++.|.++|+ |.++++ .+|++.|.+||.|.+|.|...+.+..- ----||+|....
T Consensus 429 G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~ 508 (544)
T KOG0124|consen 429 GSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIAS 508 (544)
T ss_pred CccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhh
Confidence 000577888998 555554 679999999999999999887765421 125799999999
Q ss_pred HHHHHHHhcCCceecCeEEEEEe
Q 011105 347 SAMKALKNTEKYEIDGQVLDCSL 369 (493)
Q Consensus 347 ~a~~a~~~l~~~~~~g~~i~v~~ 369 (493)
.+.+|+.+|+|++|.||++....
T Consensus 509 e~~rak~ALdGRfFgGr~VvAE~ 531 (544)
T KOG0124|consen 509 ETHRAKQALDGRFFGGRKVVAEV 531 (544)
T ss_pred HHHHHHHhhccceecCceeehhh
Confidence 99999999999999999987654
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=2.3e-26 Score=229.79 Aligned_cols=174 Identities=24% Similarity=0.459 Sum_probs=152.3
Q ss_pred cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCeee
Q 011105 199 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 278 (493)
Q Consensus 199 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 278 (493)
.++|||+||++.+++++|+++|..||. |.+|.++.+ ..+++++|||||+|.+.++|..|+..|++ ..+.++.+.+.
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~-I~sV~I~~D-~~TgkskGfAFVeF~s~e~A~~Ai~~lnG--~~i~GR~IkV~ 182 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNG--QMLGGRNIKVG 182 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCC-EEEEEEeec-CCCCCcCCeEEEEeCcHHHHHHHHHhcCC--eEEecceeeec
Confidence 457999999999999999999999998 999999998 56789999999999999999999999987 45678888777
Q ss_pred ecCCCCccc-------ccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHH
Q 011105 279 WADPRNAES-------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351 (493)
Q Consensus 279 ~~~~~~~~~-------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a 351 (493)
+........ ......++|||+||++.+++++|+++|+.||.|.+|+|.++..++.+||||||+|.+.++|.+|
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHH
Confidence 644321110 1112347999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceecCeEEEEEecCCCCcc
Q 011105 352 LKNTEKYEIDGQVLDCSLAKPQADQ 376 (493)
Q Consensus 352 ~~~l~~~~~~g~~i~v~~a~~~~~~ 376 (493)
|..||+..|+|+.|+|.++.++...
T Consensus 263 I~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 263 IASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHHhCCCeeCCeEEEEEecCCCccc
Confidence 9999999999999999999876443
No 21
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.94 E-value=2.3e-26 Score=223.67 Aligned_cols=250 Identities=22% Similarity=0.333 Sum_probs=208.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
...+.|+|+|||..+..++|..+|..||.|..|.+.+. --.|+|+|.++.+|.+|+..|....+...++.+.++
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~------G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~a 456 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG------GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWA 456 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc------cceeeeeecCccchHHHHHHhchhhhccCccccccC
Confidence 34578999999999999999999999999999954322 125999999999999999988877776666555443
Q ss_pred c-------------------------------------------------------cc-ccccccCCCCCCCHHHHHHHH
Q 011105 197 Q-------------------------------------------------------AK-HRLFIGNVPRNWGEDDMRKAV 220 (493)
Q Consensus 197 ~-------------------------------------------------------~~-~~l~v~~l~~~~~~~~l~~~f 220 (493)
. .. ..|||.||++..+.+.|..+|
T Consensus 457 P~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F 536 (725)
T KOG0110|consen 457 PEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLF 536 (725)
T ss_pred hhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHH
Confidence 2 00 139999999999999999999
Q ss_pred HhhCCCeeEEEEecCCC--CCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCeeeecCCCCcc-----ccccccc
Q 011105 221 TKIGPGVISIELVKDPQ--NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE-----SSAASQV 293 (493)
Q Consensus 221 ~~~g~~v~~~~~~~~~~--~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 293 (493)
...|. |.++.|...+. ..-.+.||+||+|.+.++|..|++.|++ ..++++.+.+.++...... ......+
T Consensus 537 ~k~G~-VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqg--tvldGH~l~lk~S~~k~~~~~gK~~~~kk~~ 613 (725)
T KOG0110|consen 537 SKQGT-VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQG--TVLDGHKLELKISENKPASTVGKKKSKKKKG 613 (725)
T ss_pred HhcCe-EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcC--ceecCceEEEEeccCcccccccccccccccc
Confidence 99998 88887766533 3456789999999999999999999996 4678888888887721111 1222336
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
+.|+|+|||+.++-.+|+++|..||.|..|+|+.......++|||||+|-+..+|.+|+.+|....|.||+|.+.||..-
T Consensus 614 tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 614 TKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred ceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 79999999999999999999999999999999998777778999999999999999999999999999999999999875
Q ss_pred Cc
Q 011105 374 AD 375 (493)
Q Consensus 374 ~~ 375 (493)
..
T Consensus 694 ~~ 695 (725)
T KOG0110|consen 694 NT 695 (725)
T ss_pred hH
Confidence 43
No 22
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.94 E-value=3.9e-25 Score=202.51 Aligned_cols=144 Identities=26% Similarity=0.492 Sum_probs=127.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhh-ccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCK-SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
..+.+||.|||+++.|.+|+++|. +.|+|+.|.++.|.. |+++|+|.|+|+++|.+++|++.||.+.|.||+|.|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 456699999999999999999995 789999999999976 999999999999999999999999999999999999753
Q ss_pred cc------------------------------------------------------------------------------
Q 011105 197 QA------------------------------------------------------------------------------ 198 (493)
Q Consensus 197 ~~------------------------------------------------------------------------------ 198 (493)
..
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 20
Q ss_pred -------------cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCC
Q 011105 199 -------------KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 265 (493)
Q Consensus 199 -------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 265 (493)
...+||.||...+....|.+.|.-.|. |..+.+-.+ ..+.++++|.++|..+-.|..|+..+..
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGk-v~~vdf~id--KeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGK-VQSVDFSID--KEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhcccee-eeeeceeec--cccccCCeeEEEecchHHHHHHHHhhcc
Confidence 115789999999999999999999998 888887776 3458889999999999999999988874
No 23
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.94 E-value=1.5e-26 Score=219.17 Aligned_cols=251 Identities=24% Similarity=0.383 Sum_probs=210.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++||+--|+..++.-+|.+||+.+|+|..|+|+.++.+++++|.|||+|.+.+.+..||. |.|..+.|.+|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 3456799999999999999999999999999999999999999999999999999999999996 999999999999987
Q ss_pred cccc--------------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHH
Q 011105 196 AQAK--------------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHAC 255 (493)
Q Consensus 196 ~~~~--------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~ 255 (493)
.... ..|+|+||.+++++..|+.+|++||. |..|.+.++ ..+|.++||+|++|.+.++
T Consensus 255 sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~-Ie~v~l~~d-~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGK-IENVQLTKD-SETGRSKGFGFITFVNKED 332 (549)
T ss_pred cHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCccc-ceeeeeccc-cccccccCcceEEEecHHH
Confidence 5421 23899999999999999999999999 999999998 6699999999999999999
Q ss_pred HHHHHHHcCCCCcccCCCCCeeeecCCCCccccc----------------------------------------------
Q 011105 256 AEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSA---------------------------------------------- 289 (493)
Q Consensus 256 a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 289 (493)
|.+|+..|++ +.+-++.+.|....-+......
T Consensus 333 ar~a~e~lng--felAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~ 410 (549)
T KOG0147|consen 333 ARKALEQLNG--FELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALL 410 (549)
T ss_pred HHHHHHHhcc--ceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHH
Confidence 9999999998 7777776665543211110000
Q ss_pred ----------------------c-------cccceEEEccC--CCCCC--------HHHHHHHHhcCCcEEEEEeCCCCC
Q 011105 290 ----------------------A-------SQVKALYVKNL--PKDIT--------QDRLKELFAHHGKITKVVIPPAKP 330 (493)
Q Consensus 290 ----------------------~-------~~~~~l~v~nl--~~~~t--------~~~l~~~f~~~G~v~~v~i~~~~~ 330 (493)
. ..+.||.+.|+ |...| .++|.+.|.+||.|..|.+.++.
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns- 489 (549)
T KOG0147|consen 411 LLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNS- 489 (549)
T ss_pred hccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCC-
Confidence 0 11356667776 22222 27788899999999999997664
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCCCcc
Q 011105 331 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 376 (493)
Q Consensus 331 ~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~ 376 (493)
-|+.||.|.+.++|..|+.+|||.+|.||.|...|-....-.
T Consensus 490 ----~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~ 531 (549)
T KOG0147|consen 490 ----AGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLERYH 531 (549)
T ss_pred ----CceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhhhh
Confidence 489999999999999999999999999999999997655433
No 24
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=3.4e-24 Score=197.44 Aligned_cols=189 Identities=21% Similarity=0.394 Sum_probs=155.8
Q ss_pred cHHHHHHHHHHhCCCcccCceEEEeccc----------------ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEe
Q 011105 170 TKELASQAIEELNSCELKGKKIKCSAAQ----------------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233 (493)
Q Consensus 170 ~~e~A~~Al~~l~~~~i~g~~i~V~~~~----------------~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~ 233 (493)
+.++|.++|..-. |..|.|.... .-+.|||+.||.++.+++|..+|.++|+ |..++||
T Consensus 43 ~~eaal~al~E~t-----gy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~-I~elRLM 116 (506)
T KOG0117|consen 43 SEEAALKALLERT-----GYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGK-IYELRLM 116 (506)
T ss_pred cHHHHHHHHHHhc-----CceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccc-eeeEEEe
Confidence 3677888876433 3445554433 2358999999999999999999999999 9999999
Q ss_pred cCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCeeeecCCCCcccccccccceEEEccCCCCCCHHHHHHH
Q 011105 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKEL 313 (493)
Q Consensus 234 ~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~ 313 (493)
++ ..+|.++|||||.|++.+.|+.|++.|++..+. .++.|.|+.+... ++|||+|||.+++.++|.+.
T Consensus 117 mD-~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc~Svan----------~RLFiG~IPK~k~keeIlee 184 (506)
T KOG0117|consen 117 MD-PFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVCVSVAN----------CRLFIGNIPKTKKKEEILEE 184 (506)
T ss_pred ec-ccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEEEeeec----------ceeEeccCCccccHHHHHHH
Confidence 99 578999999999999999999999999987655 4556666654443 89999999999999999999
Q ss_pred HhcCCc-EEEEEeCCCC-CCCCcccEEEEEeCCHHHHHHHHHhcC--CceecCeEEEEEecCCCCcc
Q 011105 314 FAHHGK-ITKVVIPPAK-PGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQADQ 376 (493)
Q Consensus 314 f~~~G~-v~~v~i~~~~-~~~~~~g~~fV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~a~~~~~~ 376 (493)
|++.+. |+.|.+.... +..++||||||+|.++.+|..|..+|- ...+.|+.|.|.||.|....
T Consensus 185 ~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ 251 (506)
T KOG0117|consen 185 MKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEP 251 (506)
T ss_pred HHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCC
Confidence 999876 6677666654 356679999999999999999998874 56678999999999997643
No 25
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=6.7e-26 Score=184.31 Aligned_cols=173 Identities=23% Similarity=0.365 Sum_probs=154.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
...||||+||+..++++-|.++|-+.|+|+++++.+++.+...+|||||+|.+.++|.-|++.||...+.||+|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 45799999999999999999999999999999999999999999999999999999999999999989999999997665
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCee
Q 011105 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277 (493)
Q Consensus 198 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 277 (493)
.... |
T Consensus 88 ~~~~----n----------------------------------------------------------------------- 92 (203)
T KOG0131|consen 88 AHQK----N----------------------------------------------------------------------- 92 (203)
T ss_pred cccc----c-----------------------------------------------------------------------
Confidence 2110 0
Q ss_pred eecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEE-EEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 011105 278 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITK-VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356 (493)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~-v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~ 356 (493)
...+.+|||+||.+.+++..|.++|+.||.|.. -.|+++..|+.++||+||.|.+.+.+.+|+..||
T Consensus 93 ------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n 160 (203)
T KOG0131|consen 93 ------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN 160 (203)
T ss_pred ------------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc
Confidence 000168999999999999999999999998765 5789999999999999999999999999999999
Q ss_pred CceecCeEEEEEecCCCCccC
Q 011105 357 KYEIDGQVLDCSLAKPQADQK 377 (493)
Q Consensus 357 ~~~~~g~~i~v~~a~~~~~~~ 377 (493)
+..+..++|+|.++..+....
T Consensus 161 gq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 161 GQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred cchhcCCceEEEEEEecCCCc
Confidence 999999999999998875543
No 26
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.93 E-value=9.5e-24 Score=197.47 Aligned_cols=245 Identities=19% Similarity=0.290 Sum_probs=185.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEe
Q 011105 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (493)
Q Consensus 115 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~ 194 (493)
.......|.+++|||++|+++|.+||+.++ |.++.+.+. +|+..|-|||+|.+.+++++||+ ++...+..|.|.|.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 345567899999999999999999999994 777666554 49999999999999999999998 88899999999998
Q ss_pred cccc-----------------cccccccCCCCCCCHHHHHHHHHhhCCCeeE-EEEecCCCCCCCCcceEEEeeCCHHHH
Q 011105 195 AAQA-----------------KHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS-IELVKDPQNANQNRGFAFIEYYNHACA 256 (493)
Q Consensus 195 ~~~~-----------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~-~~~~~~~~~~~~~~g~~fv~f~~~~~a 256 (493)
.+.. ...|.+++||+.+++++|.++|+.+-. |.. |.++.+ ..+++.+.|||+|.+.+.|
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~I-v~~gi~l~~d--~rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEI-VPDGILLPMD--QRGRPTGEAFVQFESQESA 158 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcc-cccceeeecc--CCCCcccceEEEecCHHHH
Confidence 7742 236889999999999999999998875 333 556665 4567999999999999999
Q ss_pred HHHHHHcCCCCcccCCCCCeee-----------------------------------ecCCCC-----------------
Q 011105 257 EYSRQKMSNPKFKLDDNAPTVS-----------------------------------WADPRN----------------- 284 (493)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~----------------- 284 (493)
++|+...... +..+-|.|. +...+.
T Consensus 159 e~Al~rhre~---iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g 235 (510)
T KOG4211|consen 159 EIALGRHREN---IGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYG 235 (510)
T ss_pred HHHHHHHHHh---hccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccc
Confidence 9998654320 000000000 000000
Q ss_pred ------------------------ccc-------------ccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCC
Q 011105 285 ------------------------AES-------------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPP 327 (493)
Q Consensus 285 ------------------------~~~-------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~ 327 (493)
..+ .......+++.++||+..+..+|.++|+..-.+ .|.|-.
T Consensus 236 ~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~i 314 (510)
T KOG4211|consen 236 FSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEI 314 (510)
T ss_pred cccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEe
Confidence 000 000003788999999999999999999976444 666655
Q ss_pred CCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 328 AKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 328 ~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
..++ +..|-|+|+|.|.++|..|+.. ++..+..+.|.+.+...
T Consensus 315 g~dG-r~TGEAdveF~t~edav~Amsk-d~anm~hrYVElFln~~ 357 (510)
T KOG4211|consen 315 GPDG-RATGEADVEFATGEDAVGAMGK-DGANMGHRYVELFLNGA 357 (510)
T ss_pred CCCC-ccCCcceeecccchhhHhhhcc-CCcccCcceeeecccCC
Confidence 5544 4478999999999999999986 88889999888877643
No 27
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.93 E-value=2.8e-24 Score=197.72 Aligned_cols=178 Identities=24% Similarity=0.496 Sum_probs=156.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
+.++|||++|+|+++++.|+.+|.+||+|..|.+++++.+++++||+||+|.+.+...++|. ...+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67899999999999999999999999999999999999999999999999999999999987 66778999999887775
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCee
Q 011105 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277 (493)
Q Consensus 198 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 277 (493)
+...-. ..
T Consensus 84 ~r~~~~----------------------------------~~-------------------------------------- 91 (311)
T KOG4205|consen 84 SREDQT----------------------------------KV-------------------------------------- 91 (311)
T ss_pred Cccccc----------------------------------cc--------------------------------------
Confidence 432200 00
Q ss_pred eecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCC
Q 011105 278 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357 (493)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~ 357 (493)
.....+++|||++||..+++++|+++|++||.|..+.++.+..+.+++||+||+|.+.+.+.+++. .+-
T Consensus 92 ----------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f 160 (311)
T KOG4205|consen 92 ----------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKF 160 (311)
T ss_pred ----------ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cce
Confidence 000023799999999999999999999999999999999999999999999999999999999887 589
Q ss_pred ceecCeEEEEEecCCCCccCCC
Q 011105 358 YEIDGQVLDCSLAKPQADQKTS 379 (493)
Q Consensus 358 ~~~~g~~i~v~~a~~~~~~~~~ 379 (493)
+.|+++.+.|..|.|+......
T Consensus 161 ~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 161 HDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred eeecCceeeEeeccchhhcccc
Confidence 9999999999999999876654
No 28
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.93 E-value=1.2e-24 Score=213.29 Aligned_cols=170 Identities=26% Similarity=0.459 Sum_probs=153.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCee
Q 011105 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277 (493)
Q Consensus 198 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 277 (493)
++.+|||+|||..+++++|+++|..||+ |..|+++.+ ..+++++|||||+|.+.++|..|+..|++ ..+.++.+.+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~-i~~v~i~~d-~~~g~s~g~afV~f~~~~~A~~Ai~~l~g--~~l~g~~i~v 77 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGE-IESCKLVRD-KVTGQSLGYGFVNYVRPEDAEKAVNSLNG--LRLQNKTIKV 77 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCC-EEEEEEEEc-CCCCccceEEEEEECcHHHHHHHHhhccc--EEECCeeEEE
Confidence 3568999999999999999999999998 999999998 55789999999999999999999999987 5678889999
Q ss_pred eecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCC
Q 011105 278 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357 (493)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~ 357 (493)
.|+.+.... ...++|||+|||..+++++|+.+|+.||.|..++++.+..++.++|||||+|.+.++|.+||..||+
T Consensus 78 ~~a~~~~~~----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 78 SYARPSSDS----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred Eeecccccc----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 998765432 2347899999999999999999999999999999999988888899999999999999999999999
Q ss_pred ceecC--eEEEEEecCCCCc
Q 011105 358 YEIDG--QVLDCSLAKPQAD 375 (493)
Q Consensus 358 ~~~~g--~~i~v~~a~~~~~ 375 (493)
..+.| ++|.|.++..+..
T Consensus 154 ~~~~g~~~~i~v~~a~~~~~ 173 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPSS 173 (352)
T ss_pred CccCCCceeEEEEECCCCCc
Confidence 99987 6789999877653
No 29
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.3e-25 Score=204.14 Aligned_cols=172 Identities=28% Similarity=0.488 Sum_probs=150.4
Q ss_pred cccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCccc-CCCCCeeee
Q 011105 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL-DDNAPTVSW 279 (493)
Q Consensus 201 ~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~-~~~~~~~~~ 279 (493)
++||+-+|..|++.+|+.+|++||. |.+|.+++| ..++.++|||||.|.+.++|.+|+.+|++..... ....+.+.+
T Consensus 36 KlfVgqIprt~sE~dlr~lFe~yg~-V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 36 KLFVGQIPRTASEKDLRELFEKYGN-VYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hheeccCCccccHHHHHHHHHHhCc-eeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 6899999999999999999999998 999999999 7788999999999999999999999998755433 456778888
Q ss_pred cCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-
Q 011105 280 ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY- 358 (493)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~- 358 (493)
++...... ...++|||+-|+..+|+.+|+++|++||.|++|+|+++.+.. +||+|||+|.+.+.|..||+.||+.
T Consensus 114 Ad~E~er~---~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~-sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 114 ADGERERI---VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGL-SRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred cchhhhcc---ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccccc-ccceeEEEEehHHHHHHHHHhhccce
Confidence 87654432 223799999999999999999999999999999999998755 4999999999999999999999974
Q ss_pred eecC--eEEEEEecCCCCccCC
Q 011105 359 EIDG--QVLDCSLAKPQADQKT 378 (493)
Q Consensus 359 ~~~g--~~i~v~~a~~~~~~~~ 378 (493)
++.| .+|.|+||.++..+..
T Consensus 190 tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 190 TMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred eeccCCCceEEEecccCCCchH
Confidence 4666 5899999999876543
No 30
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.7e-24 Score=186.82 Aligned_cols=154 Identities=27% Similarity=0.560 Sum_probs=142.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecccc
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~ 198 (493)
..-|||+.|...++.++|++.|.+||+|.+++|++|..|++++||+||.|.+.++|+.||..|||.-|.+|.|+..++..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 44699999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred ----------------------cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHH
Q 011105 199 ----------------------KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 256 (493)
Q Consensus 199 ----------------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a 256 (493)
++++|++|++..++++.|+++|++||+ |.+|+++++ +||+||.|.+.++|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~-I~EVRvFk~-------qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP-IQEVRVFKD-------QGYAFVRFETKEAA 213 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc-ceEEEEecc-------cceEEEEecchhhH
Confidence 347999999999999999999999999 999999987 78999999999999
Q ss_pred HHHHHHcCCCCcccCCCCCeeeecCC
Q 011105 257 EYSRQKMSNPKFKLDDNAPTVSWADP 282 (493)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~~~ 282 (493)
.+|+-.+++. .+.++.+++.|...
T Consensus 214 ahAIv~mNnt--ei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 214 AHAIVQMNNT--EIGGQLVRCSWGKE 237 (321)
T ss_pred HHHHHHhcCc--eeCceEEEEecccc
Confidence 9999999974 56677777777654
No 31
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.92 E-value=2e-24 Score=188.21 Aligned_cols=153 Identities=27% Similarity=0.513 Sum_probs=140.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccccc
Q 011105 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~~ 199 (493)
..|||+|||..+++.+|+.+|++||+|++|.|+++ |+||..++...|..||.+||+..|+|..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999986 9999999999999999999999999999999877644
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCeeee
Q 011105 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 279 (493)
Q Consensus 200 ~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 279 (493)
.+
T Consensus 75 sk------------------------------------------------------------------------------ 76 (346)
T KOG0109|consen 75 SK------------------------------------------------------------------------------ 76 (346)
T ss_pred CC------------------------------------------------------------------------------
Confidence 22
Q ss_pred cCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCce
Q 011105 280 ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359 (493)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~ 359 (493)
.+.+|+|+||.+.++..+|+..|++||.|..+.|++ +|+||.|+-.++|..|++.|++..
T Consensus 77 ------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 77 ------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred ------------CccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccc
Confidence 127899999999999999999999999999999985 599999999999999999999999
Q ss_pred ecCeEEEEEecCCCCccCC
Q 011105 360 IDGQVLDCSLAKPQADQKT 378 (493)
Q Consensus 360 ~~g~~i~v~~a~~~~~~~~ 378 (493)
|.|++++|.+++.+-....
T Consensus 137 ~~gk~m~vq~stsrlrtap 155 (346)
T KOG0109|consen 137 FQGKRMHVQLSTSRLRTAP 155 (346)
T ss_pred cccceeeeeeeccccccCC
Confidence 9999999999998755443
No 32
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.91 E-value=1.9e-23 Score=208.91 Aligned_cols=190 Identities=22% Similarity=0.370 Sum_probs=152.5
Q ss_pred HHHHHHHHHHhCCCcccCceEEEeccc-----------ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCC
Q 011105 171 KELASQAIEELNSCELKGKKIKCSAAQ-----------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239 (493)
Q Consensus 171 ~e~A~~Al~~l~~~~i~g~~i~V~~~~-----------~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~ 239 (493)
.++|.+||..+++..+........+.. ..++|||+|||..+++++|.++|+.+|. |..++|+++ .+
T Consensus 19 ~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~-I~~vrl~~D--~s 95 (578)
T TIGR01648 19 DEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGP-IYELRLMMD--FS 95 (578)
T ss_pred cHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCC-EEEEEEEEC--CC
Confidence 578888888788777655444333332 2368999999999999999999999998 999999998 67
Q ss_pred CCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCeeeecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCc
Q 011105 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 319 (493)
Q Consensus 240 ~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 319 (493)
+++++||||+|.+.++|..|+..|++..+. .++.+.+.++.. .++|||+|||+.+++++|.++|++++.
T Consensus 96 G~sRGfaFV~F~~~e~A~~Ai~~lng~~i~-~Gr~l~V~~S~~----------~~rLFVgNLP~~~TeeeL~eeFskv~e 164 (578)
T TIGR01648 96 GQNRGYAFVTFCGKEEAKEAVKLLNNYEIR-PGRLLGVCISVD----------NCRLFVGGIPKNKKREEILEEFSKVTE 164 (578)
T ss_pred CCccceEEEEeCCHHHHHHHHHHcCCCeec-CCcccccccccc----------CceeEeecCCcchhhHHHHHHhhcccC
Confidence 899999999999999999999999985542 344455554432 389999999999999999999999863
Q ss_pred -EEEEEe-CCCCCCCCcccEEEEEeCCHHHHHHHHHhcCC--ceecCeEEEEEecCCCC
Q 011105 320 -ITKVVI-PPAKPGQERSRYGFVHFAERSSAMKALKNTEK--YEIDGQVLDCSLAKPQA 374 (493)
Q Consensus 320 -v~~v~i-~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~--~~~~g~~i~v~~a~~~~ 374 (493)
|+.+.+ .......+++|||||+|.++++|..|+..|+. ..+.|+.|.|.|+.+..
T Consensus 165 gvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 165 GVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred CceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccc
Confidence 444433 33445566799999999999999999998863 46889999999998753
No 33
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=5.3e-24 Score=182.45 Aligned_cols=170 Identities=26% Similarity=0.453 Sum_probs=157.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCee
Q 011105 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277 (493)
Q Consensus 198 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 277 (493)
.+.+|.|.-||..+|+++|+.+|..+|+ |.+|++++| .-+|.+-||+||.|.++.+|++|+..+++ +.+...+|.|
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGe-iEScKLvRD-KitGqSLGYGFVNYv~p~DAe~AintlNG--LrLQ~KTIKV 115 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTLNG--LRLQNKTIKV 115 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccc-eeeeeeeec-cccccccccceeeecChHHHHHHHhhhcc--eeeccceEEE
Confidence 4567889999999999999999999999 999999999 78999999999999999999999999997 6788999999
Q ss_pred eecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCC
Q 011105 278 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357 (493)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~ 357 (493)
+++.|.... .....|||.+||..+|..+|.++|++||.|..-+|+.|..++.+||.+||.|+...+|..||+.|||
T Consensus 116 SyARPSs~~----Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG 191 (360)
T KOG0145|consen 116 SYARPSSDS----IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNG 191 (360)
T ss_pred EeccCChhh----hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccC
Confidence 999987543 3347899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCe--EEEEEecCCCCc
Q 011105 358 YEIDGQ--VLDCSLAKPQAD 375 (493)
Q Consensus 358 ~~~~g~--~i~v~~a~~~~~ 375 (493)
..-.|. +|.|+||..+..
T Consensus 192 ~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 192 QKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred CCCCCCCCCeEEEecCCccc
Confidence 988874 799999987744
No 34
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=1.7e-23 Score=212.19 Aligned_cols=171 Identities=21% Similarity=0.397 Sum_probs=146.9
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCee
Q 011105 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277 (493)
Q Consensus 198 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 277 (493)
..++|||+|||..+++++|.++|..+|. |..|.++.+ ..+++++|||||+|.+.++|.+|+. +++ ..+.++.+.+
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~-v~~v~i~~d-~~~~~skg~afVeF~~~e~A~~Al~-l~g--~~~~g~~i~v 162 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGK-VRDVQCIKD-RNSRRSKGVAYVEFYDVESVIKALA-LTG--QMLLGRPIIV 162 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-hCC--CEECCeeeEE
Confidence 3567999999999999999999999997 999999998 5678999999999999999999996 444 3456666766
Q ss_pred eecCCCCccc--------ccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHH
Q 011105 278 SWADPRNAES--------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349 (493)
Q Consensus 278 ~~~~~~~~~~--------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~ 349 (493)
.+........ ......++|||+|||..+|+++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 6543321111 11122589999999999999999999999999999999999998888999999999999999
Q ss_pred HHHHhcCCceecCeEEEEEecCCC
Q 011105 350 KALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 350 ~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
+|+..|||..|.|++|.|.|+...
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEccCC
Confidence 999999999999999999998743
No 35
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=1.1e-22 Score=175.16 Aligned_cols=241 Identities=21% Similarity=0.380 Sum_probs=162.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCc-ccC--ceEE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE-LKG--KKIK 192 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~-i~g--~~i~ 192 (493)
.-+.++|||+-|...-.|++++.+|..||.|.+|.+++..+ |.++|+|||.|.+..+|..||..||+.. +.| ..|.
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 33567899999999999999999999999999999999987 9999999999999999999999999875 444 5688
Q ss_pred Eecccccc------------------------------------------------------------------------
Q 011105 193 CSAAQAKH------------------------------------------------------------------------ 200 (493)
Q Consensus 193 V~~~~~~~------------------------------------------------------------------------ 200 (493)
|+++...+
T Consensus 95 VK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl 174 (371)
T KOG0146|consen 95 VKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGL 174 (371)
T ss_pred EEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccc
Confidence 88775221
Q ss_pred ------------------------------cccccCCCCCCCHHHHHHHHHhhCCC---eeEEEEecCCCCCC--CCcce
Q 011105 201 ------------------------------RLFIGNVPRNWGEDDMRKAVTKIGPG---VISIELVKDPQNAN--QNRGF 245 (493)
Q Consensus 201 ------------------------------~l~v~~l~~~~~~~~l~~~f~~~g~~---v~~~~~~~~~~~~~--~~~g~ 245 (493)
..-...|+...+-.--.+.+-.-|-. ..+-.+ -++.... .-..|
T Consensus 175 ~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~v-a~~lq~a~~g~~~Y 253 (371)
T KOG0146|consen 175 AAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTV-ADPLQQAYAGVQQY 253 (371)
T ss_pred ccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccc-cchhhhhhhhHHHH
Confidence 00000011100000000000000000 000000 0111110 00011
Q ss_pred EEEeeCCHHHHHHHHHHcCCCCcccCCCCCeeeecCCCCcc---cccccccceEEEccCCCCCCHHHHHHHHhcCCcEEE
Q 011105 246 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE---SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITK 322 (493)
Q Consensus 246 ~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~ 322 (493)
+ .....++..+.. .+..+.... .......++|||..||....+.+|.++|-.||.|++
T Consensus 254 ~-------Aaypaays~v~~------------~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivS 314 (371)
T KOG0146|consen 254 A-------AAYPAAYSPISQ------------AFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVS 314 (371)
T ss_pred h-------hhcchhhhhhhh------------cCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceee
Confidence 1 001111111110 000000000 112233599999999999999999999999999999
Q ss_pred EEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCCCccC
Q 011105 323 VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377 (493)
Q Consensus 323 v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~~ 377 (493)
.+++.|+.|+.+|+|+||.|+++.+|..||.+|||+.|+=++|+|.+.+|+...+
T Consensus 315 aKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 315 AKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred eeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 9999999999999999999999999999999999999999999999999987643
No 36
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=1.9e-21 Score=200.15 Aligned_cols=167 Identities=17% Similarity=0.315 Sum_probs=133.6
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhh-----------CCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCC
Q 011105 197 QAKHRLFIGNVPRNWGEDDMRKAVTKI-----------GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 265 (493)
Q Consensus 197 ~~~~~l~v~~l~~~~~~~~l~~~f~~~-----------g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 265 (493)
...++|||+|||+.+++++|..+|..+ +..|..+.+ ...++||||+|.+.++|..|+ .|++
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-------~~~kg~afVeF~~~e~A~~Al-~l~g 244 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-------NKEKNFAFLEFRTVEEATFAM-ALDS 244 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-------CCCCCEEEEEeCCHHHHhhhh-cCCC
Confidence 345789999999999999999999986 222333333 245789999999999999999 4665
Q ss_pred CCcccCCCCCeeeecCCCC-------------------------cccccccccceEEEccCCCCCCHHHHHHHHhcCCcE
Q 011105 266 PKFKLDDNAPTVSWADPRN-------------------------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320 (493)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v 320 (493)
. .+.+..+.+.+..... .........++|||+|||+.+|+++|+++|+.||.|
T Consensus 245 ~--~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i 322 (509)
T TIGR01642 245 I--IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDL 322 (509)
T ss_pred e--EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 3 4445555554321110 000112235799999999999999999999999999
Q ss_pred EEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 321 ~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
..+.|+++..++.++|||||+|.+.++|..||..||+..|.|+.|.|.++...
T Consensus 323 ~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 323 KAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 99999999989999999999999999999999999999999999999999754
No 37
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.86 E-value=3.8e-21 Score=187.59 Aligned_cols=222 Identities=24% Similarity=0.408 Sum_probs=174.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
....+|||+|||+.+++++|+.+| |||.|...+.|.+|...+++..+.||.|.|...
T Consensus 225 ~etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~ 281 (725)
T KOG0110|consen 225 SETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPS 281 (725)
T ss_pred HhhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeecCc
Confidence 456789999999999999999998 789999999999999999999999998887654
Q ss_pred c-------------------------------------------------------------------------------
Q 011105 197 Q------------------------------------------------------------------------------- 197 (493)
Q Consensus 197 ~------------------------------------------------------------------------------- 197 (493)
.
T Consensus 282 ~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~ 361 (725)
T KOG0110|consen 282 KEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVV 361 (725)
T ss_pred chhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhc
Confidence 3
Q ss_pred ----------------------ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHH
Q 011105 198 ----------------------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHAC 255 (493)
Q Consensus 198 ----------------------~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~ 255 (493)
....++++|||..+..++|..+|..||+ |..+.+.. .-.-++|.|.+..+
T Consensus 362 ~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~-i~rvllp~-------~G~~aiv~fl~p~e 433 (725)
T KOG0110|consen 362 QEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGE-IGRVLLPP-------GGTGAIVEFLNPLE 433 (725)
T ss_pred hhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccc-cceeecCc-------ccceeeeeecCccc
Confidence 0125789999999999999999999998 88884431 12248999999999
Q ss_pred HHHHHHHcCCCCcccCCCCCeeeecCC-------C---------Cc-------c------------c-----------cc
Q 011105 256 AEYSRQKMSNPKFKLDDNAPTVSWADP-------R---------NA-------E------------S-----------SA 289 (493)
Q Consensus 256 a~~a~~~~~~~~~~~~~~~~~~~~~~~-------~---------~~-------~------------~-----------~~ 289 (493)
|..|+..|....+.- ..+.+.|+.. . .. . . ..
T Consensus 434 Ar~Afrklaysr~k~--~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~ 511 (725)
T KOG0110|consen 434 ARKAFRKLAYSRFKS--APLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAED 511 (725)
T ss_pred hHHHHHHhchhhhcc--CccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhc
Confidence 999999887533211 1111111100 0 00 0 0 00
Q ss_pred ccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCC---CcccEEEEEeCCHHHHHHHHHhcCCceecCeEEE
Q 011105 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ---ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 366 (493)
Q Consensus 290 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~---~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 366 (493)
....++|||.||++.+|.++|..+|...|.|..|.|...++.. .+.|||||+|.+.++|..|++.|+|+.|+|+.|.
T Consensus 512 ~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~ 591 (725)
T KOG0110|consen 512 EETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLE 591 (725)
T ss_pred cccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEE
Confidence 0012349999999999999999999999999999988776542 3459999999999999999999999999999999
Q ss_pred EEecC
Q 011105 367 CSLAK 371 (493)
Q Consensus 367 v~~a~ 371 (493)
|.++.
T Consensus 592 lk~S~ 596 (725)
T KOG0110|consen 592 LKISE 596 (725)
T ss_pred EEecc
Confidence 99998
No 38
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.85 E-value=4.1e-20 Score=168.65 Aligned_cols=243 Identities=22% Similarity=0.319 Sum_probs=192.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCC--cccCceEEEe
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSC--ELKGKKIKCS 194 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~--~i~g~~i~V~ 194 (493)
..++.|+|||||++++|.+|..++.+||.|+.+.+++.++ -|||+|.+.+.|...+...... .+.++.|.|.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 3678999999999999999999999999999999887653 8999999999999855433332 3567777776
Q ss_pred ccccc----------------------------------------------ccccccCCCCCCCHHHHHHHHHhhCCCee
Q 011105 195 AAQAK----------------------------------------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228 (493)
Q Consensus 195 ~~~~~----------------------------------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~ 228 (493)
++... -.++|.++-+.++-+-|..+|++||. |.
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~-Vl 178 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF-VL 178 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce-eE
Confidence 65310 04577888888999999999999998 77
Q ss_pred EEEEecCCCCCCCCcce-EEEeeCCHHHHHHHHHHcCCCCcccCCCCCeeeecCCCCcc------------------c--
Q 011105 229 SIELVKDPQNANQNRGF-AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE------------------S-- 287 (493)
Q Consensus 229 ~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~-- 287 (493)
.|.-+.. +.+| |+|+|.+...|..|...|.++.+....+.+++.+..-.... .
T Consensus 179 KIiTF~K------nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~ 252 (492)
T KOG1190|consen 179 KIITFTK------NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDG 252 (492)
T ss_pred EEEEEec------ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCcc
Confidence 7765542 3444 89999999999999999999888777776665554211000 0
Q ss_pred ---------------------------------------ccccccceEEEccCC-CCCCHHHHHHHHhcCCcEEEEEeCC
Q 011105 288 ---------------------------------------SAASQVKALYVKNLP-KDITQDRLKELFAHHGKITKVVIPP 327 (493)
Q Consensus 288 ---------------------------------------~~~~~~~~l~v~nl~-~~~t~~~l~~~f~~~G~v~~v~i~~ 327 (493)
........|.|.||. ..+|.+.|..+|.-||.|.+|.|+.
T Consensus 253 ~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~ 332 (492)
T KOG1190|consen 253 QPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILY 332 (492)
T ss_pred ccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeee
Confidence 000013678888885 5699999999999999999999999
Q ss_pred CCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCCCccC
Q 011105 328 AKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377 (493)
Q Consensus 328 ~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~~ 377 (493)
++ +--|.|.+.+...|.-|+..|+|+.|.|++|+|.+++-....-
T Consensus 333 nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 333 NK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQL 377 (492)
T ss_pred cC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccC
Confidence 87 3579999999999999999999999999999999998765543
No 39
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=5.6e-20 Score=165.20 Aligned_cols=171 Identities=23% Similarity=0.461 Sum_probs=151.7
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCeeee
Q 011105 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 279 (493)
Q Consensus 200 ~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 279 (493)
+++||+.+.+.+.++.|+..|.+||+ |.+|.+-.| ..++++++|+||+|.-++.|..|+..||+ ..++++.+.|.+
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGP-IKSInMSWD-p~T~kHKgFAFVEYEvPEaAqLAlEqMNg--~mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNG--QMLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCC-cceeecccc-cccccccceEEEEEeCcHHHHHHHHHhcc--ccccCccccccC
Confidence 57899999999999999999999999 999999999 57899999999999999999999999998 467788888775
Q ss_pred cCCCCccc-------ccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHH
Q 011105 280 ADPRNAES-------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352 (493)
Q Consensus 280 ~~~~~~~~-------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~ 352 (493)
........ .....-++|||..+..++++++|+.+|+.||+|.+|.+-+...++..|||+||+|.+..+...||
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 44333222 11223589999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceecCeEEEEEecCCCC
Q 011105 353 KNTEKYEIDGQVLDCSLAKPQA 374 (493)
Q Consensus 353 ~~l~~~~~~g~~i~v~~a~~~~ 374 (493)
..||-+.++|..|+|-.+-...
T Consensus 270 asMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred hhcchhhcccceEecccccCCC
Confidence 9999999999999998876543
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.81 E-value=4.5e-19 Score=147.65 Aligned_cols=83 Identities=19% Similarity=0.414 Sum_probs=79.2
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+.+|+++|+++|++||.|.+|.|+.+..++.++|||||+|.+.++|.+||+.||+..|.|++|+|.++.+
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~ 113 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND 113 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCc
Q 011105 373 QAD 375 (493)
Q Consensus 373 ~~~ 375 (493)
+..
T Consensus 114 ~~~ 116 (144)
T PLN03134 114 RPS 116 (144)
T ss_pred CCC
Confidence 543
No 41
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.79 E-value=6.5e-18 Score=143.98 Aligned_cols=207 Identities=18% Similarity=0.329 Sum_probs=148.7
Q ss_pred CCeEEEcCCCCCCCHHHHHH----HhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEe
Q 011105 119 GSEVYLGGIPHDASDDDLRH----FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~----~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~ 194 (493)
..||||.||+..+..++|+. +|++||.|..|..... .+.+|-|||.|.+.+.|..|+.+|+|..+.|+.++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999999887 9999999999988765 6799999999999999999999999999999999999
Q ss_pred cccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCC
Q 011105 195 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 274 (493)
Q Consensus 195 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 274 (493)
++..+..++..--+..+.. ........+...+.. ...++....+....
T Consensus 86 yA~s~sdii~~~~~~~v~~----------~~k~~~~~~~~~~~~----------------------~~~ng~~~~~~~~~ 133 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEK----------EKKINGEILARIKQP----------------------LDTNGHFYNMNRMN 133 (221)
T ss_pred cccCccchhhccCceeccc----------cCccccccccccCCc----------------------cccccccccccccc
Confidence 9987766533211100000 000000000000000 00000000000000
Q ss_pred CeeeecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHh
Q 011105 275 PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354 (493)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 354 (493)
+...+ ..........||+.|||..++.+.|..+|.+|.-...|+++... .+.|||+|.+...|..|...
T Consensus 134 ~p~p~------~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~ 202 (221)
T KOG4206|consen 134 LPPPF------LAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQA 202 (221)
T ss_pred CCCCc------cccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhh
Confidence 00000 01223345899999999999999999999999999999999876 68999999999999999999
Q ss_pred cCCceec-CeEEEEEecC
Q 011105 355 TEKYEID-GQVLDCSLAK 371 (493)
Q Consensus 355 l~~~~~~-g~~i~v~~a~ 371 (493)
|.+..|. ...+.|.+++
T Consensus 203 lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 203 LQGFKITKKNTMQITFAK 220 (221)
T ss_pred hccceeccCceEEecccC
Confidence 9999887 7888888875
No 42
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.77 E-value=2.5e-17 Score=148.75 Aligned_cols=244 Identities=18% Similarity=0.223 Sum_probs=202.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHh--CCCcccCceEE
Q 011105 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL--NSCELKGKKIK 192 (493)
Q Consensus 115 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l--~~~~i~g~~i~ 192 (493)
++..+-.|.|++|-..+++.+|.+.++.||.|..|.++..+ ..|.|+|++.+.|+.|+... +...+.|..--
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhh
Confidence 45667799999999999999999999999999999887654 48999999999999998732 34456777666
Q ss_pred Eeccccc-------------ccc--cccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHH
Q 011105 193 CSAAQAK-------------HRL--FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257 (493)
Q Consensus 193 V~~~~~~-------------~~l--~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 257 (493)
+.+++.+ ..| .|-|--..+|-+.|..++.+.|. |..|.|++. +--.|.|+|.+.+.|+
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~Gk-VlRIvIfkk------ngVQAmVEFdsv~~Aq 173 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGK-VLRIVIFKK------NGVQAMVEFDSVEVAQ 173 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCc-eEEEEEEec------cceeeEEeechhHHHH
Confidence 6666432 223 34555667999999999999999 999999873 4557999999999999
Q ss_pred HHHHHcCCCCcccCCCCCeeeecCCCCcccccccc---------------------------------------------
Q 011105 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQ--------------------------------------------- 292 (493)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 292 (493)
+|.+.|++..+....+++.+.++.|....-.....
T Consensus 174 rAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~ 253 (494)
T KOG1456|consen 174 RAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYY 253 (494)
T ss_pred HHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCc
Confidence 99999999999999999999998875422100000
Q ss_pred ---------------------------------cceEEEccCCCC-CCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEE
Q 011105 293 ---------------------------------VKALYVKNLPKD-ITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 338 (493)
Q Consensus 293 ---------------------------------~~~l~v~nl~~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~ 338 (493)
...+.|.+|... ++.+.|.++|-.||.|.+|++++.+ .|.|
T Consensus 254 sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gta 328 (494)
T KOG1456|consen 254 SGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTA 328 (494)
T ss_pred ccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----ccee
Confidence 478899999765 7789999999999999999999987 5799
Q ss_pred EEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCCCcc
Q 011105 339 FVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 376 (493)
Q Consensus 339 fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~ 376 (493)
.|+..+..+.++|+..||+..+.|.+|.|.+++.....
T Consensus 329 mVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~ 366 (494)
T KOG1456|consen 329 MVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVS 366 (494)
T ss_pred EEEcCcHHHHHHHHHHhccCccccceEEEeeccccccc
Confidence 99999999999999999999999999999998876443
No 43
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=1.7e-17 Score=135.52 Aligned_cols=174 Identities=15% Similarity=0.276 Sum_probs=131.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
..+++|||+|||.++.+.+|.++|.+||.|..|.|...+ ..-.||||+|+++.+|..||..-++..+.|+.|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 467899999999999999999999999999999986543 35679999999999999999999999999999999988
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCe
Q 011105 197 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 276 (493)
Q Consensus 197 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 276 (493)
..-..-.-.. | .-.+..++
T Consensus 81 rggr~s~~~~-----------------G------------~y~gggrg-------------------------------- 99 (241)
T KOG0105|consen 81 RGGRSSSDRR-----------------G------------SYSGGGRG-------------------------------- 99 (241)
T ss_pred cCCCcccccc-----------------c------------ccCCCCCC--------------------------------
Confidence 6432100000 0 00000000
Q ss_pred eeecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 011105 277 VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356 (493)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~ 356 (493)
.+.............-.+|.|.+||.+.+|++|+++..+.|.|....+.++ |++.|+|...++.+-|+..|.
T Consensus 100 -Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 100 -GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred -CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhc
Confidence 000000000011111278999999999999999999999999999999877 589999999999999999998
Q ss_pred CceecC
Q 011105 357 KYEIDG 362 (493)
Q Consensus 357 ~~~~~g 362 (493)
...+..
T Consensus 172 ~~~~~s 177 (241)
T KOG0105|consen 172 DQKFRS 177 (241)
T ss_pred cccccC
Confidence 877653
No 44
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.76 E-value=4.2e-17 Score=146.32 Aligned_cols=205 Identities=22% Similarity=0.389 Sum_probs=145.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcc
Q 011105 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTE--------VRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186 (493)
Q Consensus 115 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i 186 (493)
.+...+.|||.|||.++|.+++.++|++||.|.. |+|.++.+ |..+|-|.+.|-..+++..|++.|++..|
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccc
Confidence 3556778999999999999999999999998864 89999987 99999999999999999999999999999
Q ss_pred cCceEEEecccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCC
Q 011105 187 KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 266 (493)
Q Consensus 187 ~g~~i~V~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 266 (493)
.|+.|+|..|+-... |. ...+++.++ ...-.+-+..+...
T Consensus 209 rg~~~rVerAkfq~K----------------------ge----------~~~~~k~k~--------k~~~~kk~~k~q~k 248 (382)
T KOG1548|consen 209 RGKKLRVERAKFQMK----------------------GE----------YDASKKEKG--------KCKDKKKLKKQQQK 248 (382)
T ss_pred cCcEEEEehhhhhhc----------------------cC----------cCccccccc--------ccccHHHHHHHHHh
Confidence 999999998863211 10 000000000 00000001111110
Q ss_pred CcccCCCCCeeeecCCCCcccccccccceEEEccCCC----CCC-------HHHHHHHHhcCCcEEEEEeCCCCCCCCcc
Q 011105 267 KFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPK----DIT-------QDRLKELFAHHGKITKVVIPPAKPGQERS 335 (493)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~----~~t-------~~~l~~~f~~~G~v~~v~i~~~~~~~~~~ 335 (493)
.+. |.... ...+.....++|.|+||-. ..+ .++|++-+++||.|.+|.|..... .
T Consensus 249 ~~d---------w~pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hP----d 314 (382)
T KOG1548|consen 249 LLD---------WRPDR-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHP----D 314 (382)
T ss_pred hcc---------cCCCc-cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCC----C
Confidence 000 10001 1112223348899999832 223 366778899999999999985543 6
Q ss_pred cEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCCC
Q 011105 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 374 (493)
Q Consensus 336 g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~ 374 (493)
|.+-|.|.+.++|..||+.|+|++|.||.|..++.....
T Consensus 315 GvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 315 GVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred ceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 899999999999999999999999999999988876543
No 45
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=4.8e-17 Score=157.28 Aligned_cols=245 Identities=21% Similarity=0.408 Sum_probs=186.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc------------CCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSI------------GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE 185 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~------------G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~ 185 (493)
..+.++|.++|+.++++.+..+|..- -.|..|.|... +.||||+|.+.+.|..|.. +++..
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~------~nfa~ie~~s~~~at~~~~-~~~~~ 246 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE------KNFAFIEFRSISEATEAMA-LDGII 246 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc------ccceeEEecCCCchhhhhc-ccchh
Confidence 45679999999999999999998754 23667776544 4699999999999999987 88888
Q ss_pred ccCceEEEeccc-----------------------------ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCC
Q 011105 186 LKGKKIKCSAAQ-----------------------------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDP 236 (493)
Q Consensus 186 i~g~~i~V~~~~-----------------------------~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~ 236 (493)
+.|..+++.... ....++|++||..+++..+.+++..||+ +....++.+
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~-lk~f~lv~d- 324 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGP-LKAFRLVKD- 324 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhccc-chhheeecc-
Confidence 888877665322 2247899999999999999999999999 999999998
Q ss_pred CCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCeeeecCCCCcc--------------------cccccccceE
Q 011105 237 QNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE--------------------SSAASQVKAL 296 (493)
Q Consensus 237 ~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~l 296 (493)
..++.+++|||.+|.+......|+..|++.. +....+.+..+...... ......+.+|
T Consensus 325 ~~~g~skg~af~ey~dpsvtd~A~agLnGm~--lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl 402 (500)
T KOG0120|consen 325 SATGNSKGFAFCEYCDPSVTDQAIAGLNGMQ--LGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVL 402 (500)
T ss_pred cccccccceeeeeeeCCcchhhhhcccchhh--hcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhh
Confidence 5669999999999999999999999988743 33333333333221100 1111223455
Q ss_pred EEccCC--CCCC--------HHHHHHHHhcCCcEEEEEeCCC-C--CCCCcccEEEEEeCCHHHHHHHHHhcCCceecCe
Q 011105 297 YVKNLP--KDIT--------QDRLKELFAHHGKITKVVIPPA-K--PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 363 (493)
Q Consensus 297 ~v~nl~--~~~t--------~~~l~~~f~~~G~v~~v~i~~~-~--~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~ 363 (493)
.+.|+- ..+. -++|+.-|.+||.|..|.|++. . .-....|..||+|.+.+++++|+..|+|.+|.+|
T Consensus 403 ~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR 482 (500)
T KOG0120|consen 403 CLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR 482 (500)
T ss_pred hhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCc
Confidence 555541 1111 1556778889999999999987 2 2233457899999999999999999999999999
Q ss_pred EEEEEecCCC
Q 011105 364 VLDCSLAKPQ 373 (493)
Q Consensus 364 ~i~v~~a~~~ 373 (493)
.|...|-..-
T Consensus 483 tVvtsYydeD 492 (500)
T KOG0120|consen 483 TVVASYYDED 492 (500)
T ss_pred EEEEEecCHH
Confidence 9999987653
No 46
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.74 E-value=5.5e-18 Score=161.33 Aligned_cols=175 Identities=22% Similarity=0.446 Sum_probs=142.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCee
Q 011105 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277 (493)
Q Consensus 198 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 277 (493)
..+++|+--|+...+..+|.++|+.+|. |..+.++.+ ..+.+++|.+||+|.+......|+. |.+. .+.+..+.+
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gk-VrdVriI~D-r~s~rskgi~Yvef~D~~sVp~aia-LsGq--rllg~pv~v 252 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGK-VRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAIA-LSGQ--RLLGVPVIV 252 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcC-cceeEeecc-ccchhhcceeEEEEecccchhhHhh-hcCC--cccCceeEe
Confidence 4467888888888999999999999999 999999999 7889999999999999999998884 3332 223333333
Q ss_pred eecCCCCccc----------ccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHH
Q 011105 278 SWADPRNAES----------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347 (493)
Q Consensus 278 ~~~~~~~~~~----------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~ 347 (493)
+......... ........|||+||.+++++++|+.+|+.||.|..|.+.++..++.++||+||+|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 3321111000 011112349999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceecCeEEEEEecCCCCccC
Q 011105 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377 (493)
Q Consensus 348 a~~a~~~l~~~~~~g~~i~v~~a~~~~~~~ 377 (493)
|.+|+.+|||+.|.||.|+|....-+....
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r~~~~ 362 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTERVDTK 362 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeeecccc
Confidence 999999999999999999999887665443
No 47
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.73 E-value=4.2e-16 Score=146.60 Aligned_cols=167 Identities=16% Similarity=0.255 Sum_probs=130.2
Q ss_pred cccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCeeeec
Q 011105 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA 280 (493)
Q Consensus 201 ~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~ 280 (493)
.|.+.+||+++|+++|+++|+.++ |..+.+.+ .+++..|-|||+|.+.+++.+|+++-.. .+..+-|.|..+
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~--I~~~~~~r---~~Gr~sGeA~Ve~~seedv~~AlkkdR~---~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCG--IENLEIPR---RNGRPSGEAYVEFTSEEDVEKALKKDRE---SMGHRYIEVFTA 83 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCc--eeEEEEec---cCCCcCcceEEEeechHHHHHHHHhhHH---HhCCceEEEEcc
Confidence 466789999999999999999998 88866665 4799999999999999999999986542 445555555444
Q ss_pred CCC--------CcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEE-EEeCCCCCCCCcccEEEEEeCCHHHHHHH
Q 011105 281 DPR--------NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITK-VVIPPAKPGQERSRYGFVHFAERSSAMKA 351 (493)
Q Consensus 281 ~~~--------~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~-v~i~~~~~~~~~~g~~fV~f~~~~~a~~a 351 (493)
... ...... ....+|.+++||+.||+++|.+||+-.-.|.. |.++.+.. +++.|-|||+|++.+.|++|
T Consensus 84 ~~~e~d~~~~~~g~~s~-~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae~A 161 (510)
T KOG4211|consen 84 GGAEADWVMRPGGPNSS-ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAEIA 161 (510)
T ss_pred CCccccccccCCCCCCC-CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHHHH
Confidence 222 111111 23478999999999999999999998766666 44555554 44689999999999999999
Q ss_pred HHhcCCceecCeEEEEEecCCCCccCC
Q 011105 352 LKNTEKYEIDGQVLDCSLAKPQADQKT 378 (493)
Q Consensus 352 ~~~l~~~~~~g~~i~v~~a~~~~~~~~ 378 (493)
|.. |...|..|.|.|..+.....+..
T Consensus 162 l~r-hre~iGhRYIEvF~Ss~~e~~~~ 187 (510)
T KOG4211|consen 162 LGR-HRENIGHRYIEVFRSSRAEVKRA 187 (510)
T ss_pred HHH-HHHhhccceEEeehhHHHHHHhh
Confidence 996 88899999999999887655443
No 48
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.72 E-value=4e-17 Score=136.00 Aligned_cols=83 Identities=25% Similarity=0.623 Sum_probs=78.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
..+++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+.|++..|.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccc
Q 011105 197 QAK 199 (493)
Q Consensus 197 ~~~ 199 (493)
..+
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 654
No 49
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.71 E-value=1.5e-15 Score=139.21 Aligned_cols=235 Identities=17% Similarity=0.199 Sum_probs=185.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCccc-C-ceEEEecccc
Q 011105 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-G-KKIKCSAAQA 198 (493)
Q Consensus 121 ~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~-g-~~i~V~~~~~ 198 (493)
+++|.|+-+-+|-+-|+.+|++||.|..|.-+... +.=-|+|+|.+.+.|..|...|+|.-|- | +.|+|.++.-
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Kn----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKN----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEecc----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 67899999999999999999999999988766542 2234999999999999999999998874 3 5677776540
Q ss_pred ---------------------------------------------------------------------cccccccCCCC
Q 011105 199 ---------------------------------------------------------------------KHRLFIGNVPR 209 (493)
Q Consensus 199 ---------------------------------------------------------------------~~~l~v~~l~~ 209 (493)
+..|.|.||..
T Consensus 228 t~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~ 307 (492)
T KOG1190|consen 228 TDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNE 307 (492)
T ss_pred ccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCch
Confidence 12456667654
Q ss_pred -CCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCeeeecCCCCccc-
Q 011105 210 -NWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES- 287 (493)
Q Consensus 210 -~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 287 (493)
.+|.+.|..+|.-||. |..|+|+.. .+.-|+|++.+...|..|+..|.+. .+.++.+++.+.......-
T Consensus 308 ~~VT~d~LftlFgvYGd-VqRVkil~n------kkd~ALIQmsd~~qAqLA~~hL~g~--~l~gk~lrvt~SKH~~vqlp 378 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGVYGD-VQRVKILYN------KKDNALIQMSDGQQAQLAMEHLEGH--KLYGKKLRVTLSKHTNVQLP 378 (492)
T ss_pred hccchhHHHHHHhhhcc-eEEEEeeec------CCcceeeeecchhHHHHHHHHhhcc--eecCceEEEeeccCccccCC
Confidence 5799999999999999 999999986 2367999999999999999999984 4445666666554321110
Q ss_pred ------------------------------ccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccE
Q 011105 288 ------------------------------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRY 337 (493)
Q Consensus 288 ------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~ 337 (493)
....++.+|.+.|+|.++++++|+.+|...|-.........++ +-+
T Consensus 379 ~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd----~km 454 (492)
T KOG1190|consen 379 REGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKD----RKM 454 (492)
T ss_pred CCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCC----cce
Confidence 0112357899999999999999999999988776555444332 459
Q ss_pred EEEEeCCHHHHHHHHHhcCCceecC-eEEEEEecCC
Q 011105 338 GFVHFAERSSAMKALKNTEKYEIDG-QVLDCSLAKP 372 (493)
Q Consensus 338 ~fV~f~~~~~a~~a~~~l~~~~~~g-~~i~v~~a~~ 372 (493)
+++.+.+.+.|..|+..+|++.+.. ..|+|+|++.
T Consensus 455 al~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred eecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 9999999999999999999999986 5899999875
No 50
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.70 E-value=1.7e-15 Score=137.48 Aligned_cols=253 Identities=15% Similarity=0.196 Sum_probs=187.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
....|..++|||..+..+|..||+-.-.+.-.+.++...-|+..|.|.|.|.+.+.-.-|++ -|.+.+.++.|.|..+.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKAT 137 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeeccC
Confidence 45678899999999999999999876444433444444447888999999999999999998 68888999999998765
Q ss_pred cc----------------------ccccccCCCCCCCHHHHHHHHHh---hCCCeeEEEEecCCCCCCCCcceEEEeeCC
Q 011105 198 AK----------------------HRLFIGNVPRNWGEDDMRKAVTK---IGPGVISIELVKDPQNANQNRGFAFIEYYN 252 (493)
Q Consensus 198 ~~----------------------~~l~v~~l~~~~~~~~l~~~f~~---~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~ 252 (493)
.. -.+.+++||++.+..++..+|.+ .+.++..+-.+. ...++..|-|||.|..
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~--rpdgrpTGdAFvlfa~ 215 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT--RPDGRPTGDAFVLFAC 215 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE--CCCCCcccceEEEecC
Confidence 22 24678999999999999999963 232355565555 4578999999999999
Q ss_pred HHHHHHHHHHcCCCC----c---------------------ccCCCCCeeeecCCCCcccccccccceEEEccCCCCCCH
Q 011105 253 HACAEYSRQKMSNPK----F---------------------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQ 307 (493)
Q Consensus 253 ~~~a~~a~~~~~~~~----~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~ 307 (493)
.+.|+.|+.+..... + .+.......--..+.... .......||.+++||+..+.
T Consensus 216 ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~-p~~~~kdcvRLRGLPy~Atv 294 (508)
T KOG1365|consen 216 EEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLV-PPTRSKDCVRLRGLPYEATV 294 (508)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccC-CCCCCCCeeEecCCChhhhH
Confidence 999999986544210 0 000000000000011000 11222589999999999999
Q ss_pred HHHHHHHhcCCc-EEE--EEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCCCc
Q 011105 308 DRLKELFAHHGK-ITK--VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375 (493)
Q Consensus 308 ~~l~~~f~~~G~-v~~--v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~ 375 (493)
++|.+||..|-. |.. |+++.+.++.. .|-|||+|.+.++|..|....|++....|.|.|.-+....-
T Consensus 295 EdIL~FlgdFa~~i~f~gVHmv~N~qGrP-SGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eel 364 (508)
T KOG1365|consen 295 EDILDFLGDFATDIRFQGVHMVLNGQGRP-SGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEEL 364 (508)
T ss_pred HHHHHHHHHHhhhcccceeEEEEcCCCCc-ChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHH
Confidence 999999998865 333 77777776544 88999999999999999999999888999999998876543
No 51
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.5e-15 Score=130.12 Aligned_cols=82 Identities=30% Similarity=0.513 Sum_probs=79.6
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|.|.||+.++++++|+++|.+||.|.+|.|.+++.|+.+||||||+|.+.++|.+||..|||+-++.--|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 34889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 011105 372 PQ 373 (493)
Q Consensus 372 ~~ 373 (493)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 52
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.61 E-value=1.4e-14 Score=122.15 Aligned_cols=225 Identities=18% Similarity=0.225 Sum_probs=129.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEee-CCCCCCcceEEEEEeccHHHHHHHHHHhCCCcc---cCceEEE
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMK-GKDSGEAKGYAFVTFRTKELASQAIEELNSCEL---KGKKIKC 193 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~-~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i---~g~~i~V 193 (493)
.-+||||.+||.++...+|..+|..|--...+.|.. ++....++.+|||.|.+...|..|...|||..| .+..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 458999999999999999999999986556555543 333345678999999999999999999999988 4788999
Q ss_pred ecccccccccccCCCC---CCCHHHH-HHHHHhh-CCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCc
Q 011105 194 SAAQAKHRLFIGNVPR---NWGEDDM-RKAVTKI-GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 268 (493)
Q Consensus 194 ~~~~~~~~l~v~~l~~---~~~~~~l-~~~f~~~-g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~ 268 (493)
++++.+.+..-..... ..+.-.+ ..-+..+ ......+....++..-. ....| .| +.....
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~-----------~~~~a-~a---l~~~~~ 177 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQ-----------EPGNA-DA---LKENDT 177 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccC-----------Ccccc-cc---CCCccc
Confidence 9987654322111111 0000000 0000000 00000000000000000 00000 00 000000
Q ss_pred -ccCCCCCeeeecCCCC-------cccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEE
Q 011105 269 -KLDDNAPTVSWADPRN-------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFV 340 (493)
Q Consensus 269 -~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV 340 (493)
..........|+.+.. ........+.+|||.||...+|+++|+.+|+.|--...++|... ++ ...|||
T Consensus 178 t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~ 253 (284)
T KOG1457|consen 178 TKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFA 253 (284)
T ss_pred cchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEee
Confidence 0000000011111110 00122333689999999999999999999999977666665332 12 358999
Q ss_pred EeCCHHHHHHHHHhcCCceec
Q 011105 341 HFAERSSAMKALKNTEKYEID 361 (493)
Q Consensus 341 ~f~~~~~a~~a~~~l~~~~~~ 361 (493)
.|.+.+.|..|+..|.|..|.
T Consensus 254 ~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 254 DFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred cHHHHHHHHHHHHHhhcceec
Confidence 999999999999998887663
No 53
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=4.7e-15 Score=126.77 Aligned_cols=79 Identities=28% Similarity=0.506 Sum_probs=75.1
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
++|||++|+|.++.+.|+++|++||.|+.+.|+.|+.++++|||+||+|.+.++|.+|++. .+-.|+||+..|.+|.-.
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~lg 91 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASLG 91 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhhc
Confidence 7999999999999999999999999999999999999999999999999999999999996 567899999999998763
No 54
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=1.6e-15 Score=131.09 Aligned_cols=167 Identities=26% Similarity=0.466 Sum_probs=129.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccccc
Q 011105 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~~ 199 (493)
..|||++||+.+.+.+|..||..||.|..|.+.. +|+||+|.+..+|..|+..|++..|.+..+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4699999999999999999999999999998754 59999999999999999999999999988888777632
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCeeee
Q 011105 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 279 (493)
Q Consensus 200 ~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 279 (493)
..-. +.+.+ + .+.. |
T Consensus 74 ~~~~------------------------------------g~~~~-g-------------------------~r~~---~ 88 (216)
T KOG0106|consen 74 RRGR------------------------------------GRPRG-G-------------------------DRRS---D 88 (216)
T ss_pred cccc------------------------------------CCCCC-C-------------------------Cccc---h
Confidence 1100 00000 0 0000 0
Q ss_pred cCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCce
Q 011105 280 ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359 (493)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~ 359 (493)
... ........+.|+|.||+..+.+.+|.+.|.++|.+....+ .++++||+|.+.++|.+|+..|++..
T Consensus 89 ~~~---~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 89 SRR---YRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKK 157 (216)
T ss_pred hhc---cCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchh
Confidence 000 0011112278999999999999999999999999966555 25799999999999999999999999
Q ss_pred ecCeEEEEEec
Q 011105 360 IDGQVLDCSLA 370 (493)
Q Consensus 360 ~~g~~i~v~~a 370 (493)
+.++.|.+...
T Consensus 158 ~~~~~l~~~~~ 168 (216)
T KOG0106|consen 158 LNGRRISVEKN 168 (216)
T ss_pred hcCceeeeccc
Confidence 99999999433
No 55
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=2e-15 Score=129.05 Aligned_cols=78 Identities=31% Similarity=0.685 Sum_probs=71.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
-++|||++|+|.++.+.|+++|++||+|++..|+.|+.|++++||+||+|++.++|.+|++. ..-.|+||+..+.++.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 36899999999999999999999999999999999999999999999999999999999984 4457899998887653
No 56
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.59 E-value=3.9e-15 Score=142.22 Aligned_cols=82 Identities=28% Similarity=0.393 Sum_probs=78.7
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+++|+++|+++|+.||.|+.|+|+++..++.++|||||+|.+.++|.+||+.||+..|.+++|+|.++.
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC
Q 011105 372 PQ 373 (493)
Q Consensus 372 ~~ 373 (493)
+.
T Consensus 186 p~ 187 (346)
T TIGR01659 186 PG 187 (346)
T ss_pred cc
Confidence 64
No 57
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.59 E-value=6.1e-15 Score=108.00 Aligned_cols=70 Identities=33% Similarity=0.626 Sum_probs=66.3
Q ss_pred EEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEE
Q 011105 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 366 (493)
Q Consensus 296 l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 366 (493)
|||+|||..+|+++|+++|+.||.|..+.+..+ .++..+++|||+|.+.++|.+|+..|++..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 5666789999999999999999999999999999985
No 58
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.59 E-value=6.3e-15 Score=107.91 Aligned_cols=70 Identities=40% Similarity=0.873 Sum_probs=67.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEE
Q 011105 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK 192 (493)
Q Consensus 122 l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~ 192 (493)
|||+|||.++|+++|+++|++||.|..+.+..+ .++..+++|||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5589999999999999999999999999999999885
No 59
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=5.5e-15 Score=113.46 Aligned_cols=83 Identities=20% Similarity=0.341 Sum_probs=77.9
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
+++|||+||++.+++++|.++|+++|.|..|.+-.++.+...-|||||+|.+.++|..|++-+++..++.++|+|.|...
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAG 115 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecccc
Confidence 48999999999999999999999999999999999999888889999999999999999999999999999999999765
Q ss_pred CCc
Q 011105 373 QAD 375 (493)
Q Consensus 373 ~~~ 375 (493)
-..
T Consensus 116 F~e 118 (153)
T KOG0121|consen 116 FVE 118 (153)
T ss_pred chh
Confidence 433
No 60
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.58 E-value=7.7e-15 Score=122.31 Aligned_cols=83 Identities=25% Similarity=0.450 Sum_probs=79.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 291 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
.....|.|.||.+-++.++|+.+|++||.|.+|.|+++.-|..++|||||.|....+|+.|+.+|+|.+|+|+.|.|.+|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 011105 371 KPQ 373 (493)
Q Consensus 371 ~~~ 373 (493)
.-.
T Consensus 91 ryg 93 (256)
T KOG4207|consen 91 RYG 93 (256)
T ss_pred hcC
Confidence 744
No 61
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=7.5e-15 Score=125.88 Aligned_cols=82 Identities=27% Similarity=0.517 Sum_probs=79.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
...+|.|.||+.++++.+|+++|.+||.|.+|.|.+++.||.++|||||.|.+.++|.+||..|||.-+..-.|+|++++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 011105 198 AK 199 (493)
Q Consensus 198 ~~ 199 (493)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 64
No 62
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=7e-15 Score=131.19 Aligned_cols=86 Identities=23% Similarity=0.377 Sum_probs=78.3
Q ss_pred ccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q 011105 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (493)
Q Consensus 288 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 367 (493)
......++|+|.|||+...+-||+.+|.+||+|.+|.|+.+..+ +|||+||+|++.++|.+|..+|||..|.||+|.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG--SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG--SKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC--CCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 33444699999999999999999999999999999999998744 4799999999999999999999999999999999
Q ss_pred EecCCCCc
Q 011105 368 SLAKPQAD 375 (493)
Q Consensus 368 ~~a~~~~~ 375 (493)
..|+.+..
T Consensus 169 n~ATarV~ 176 (376)
T KOG0125|consen 169 NNATARVH 176 (376)
T ss_pred eccchhhc
Confidence 99998743
No 63
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=3.6e-14 Score=104.72 Aligned_cols=79 Identities=28% Similarity=0.456 Sum_probs=74.0
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
++.|||+|||+.+|.+++.++|.+||.|..|+|-..+.| +|.|||.|++..+|.+|+..|+|..+.++.|.|-+-.+
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 488999999999999999999999999999999887766 79999999999999999999999999999999999876
Q ss_pred CC
Q 011105 373 QA 374 (493)
Q Consensus 373 ~~ 374 (493)
..
T Consensus 95 ~~ 96 (124)
T KOG0114|consen 95 ED 96 (124)
T ss_pred HH
Confidence 54
No 64
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=9e-14 Score=122.68 Aligned_cols=88 Identities=19% Similarity=0.379 Sum_probs=82.1
Q ss_pred ccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q 011105 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (493)
Q Consensus 290 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 369 (493)
...-+||||.-|++.+++..|+..|+.||.|+.|+|++++.+++++|||||+|.+..+...|.+..+|.+|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccC
Q 011105 370 AKPQADQK 377 (493)
Q Consensus 370 a~~~~~~~ 377 (493)
-..+....
T Consensus 178 ERgRTvkg 185 (335)
T KOG0113|consen 178 ERGRTVKG 185 (335)
T ss_pred cccccccc
Confidence 87765543
No 65
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.54 E-value=2.8e-14 Score=104.29 Aligned_cols=70 Identities=31% Similarity=0.572 Sum_probs=64.9
Q ss_pred EEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEE
Q 011105 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 366 (493)
Q Consensus 296 l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 366 (493)
|||+|||+++++++|+++|+.||.|..+++..++. +.++++|||+|.+.++|.+|+..+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 77899999999999999999999999999999885
No 66
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.53 E-value=4e-14 Score=103.51 Aligned_cols=70 Identities=41% Similarity=0.834 Sum_probs=65.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEE
Q 011105 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK 192 (493)
Q Consensus 122 l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~ 192 (493)
|||+|||+++++++|+++|+.||.|..+++..+++ +..+++|||+|.+.++|.+|+..+++..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999988 89999999999999999999999888999999874
No 67
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.53 E-value=4.9e-14 Score=125.29 Aligned_cols=76 Identities=25% Similarity=0.336 Sum_probs=71.3
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
++|||+|||+.+|+++|+++|+.||.|.+|+|+.+.. .+|||||+|.+.++|..||. |||..|.|+.|.|.++...
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 7999999999999999999999999999999998874 36899999999999999996 9999999999999998755
No 68
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.52 E-value=1.3e-13 Score=131.24 Aligned_cols=169 Identities=30% Similarity=0.579 Sum_probs=123.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecccc
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~ 198 (493)
.++|||+|||+.+|+++|.++|..||.|..|.+..++.++.++|||||+|.+.++|..|+..+++..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999998999999999999999999999999999999999999988653
Q ss_pred --cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCe
Q 011105 199 --KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 276 (493)
Q Consensus 199 --~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 276 (493)
........+ +...+. . ..
T Consensus 195 ~~~~~~~~~~~--------~~~~~~-------------------------------------------~-------~~-- 214 (306)
T COG0724 195 ASQPRSELSNN--------LDASFA-------------------------------------------K-------KL-- 214 (306)
T ss_pred ccccccccccc--------cchhhh-------------------------------------------c-------cc--
Confidence 000000000 000000 0 00
Q ss_pred eeecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHH
Q 011105 277 VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353 (493)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~ 353 (493)
.............+++.+++..++...+..+|..+|.+..+.+...........+.++.+.....+..++.
T Consensus 215 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 215 ------SRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ------cccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 00000111223789999999999999999999999999888887776554434444444444444444443
No 69
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=2.1e-15 Score=123.06 Aligned_cols=81 Identities=22% Similarity=0.603 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
..+.-|||+|||+.+||.||.-+|++||+|+.|.+++|+.||+++||||+.|++..+...|+.+|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred c
Q 011105 197 Q 197 (493)
Q Consensus 197 ~ 197 (493)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 3
No 70
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=4.2e-14 Score=108.67 Aligned_cols=81 Identities=14% Similarity=0.335 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
...++||||+||++.+||++|.++|+.+|+|..|.+=.++.+...=|||||+|.+.++|..|+..+++..+..+.|+|.+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34689999999999999999999999999999999999998889999999999999999999999999999999999976
Q ss_pred c
Q 011105 196 A 196 (493)
Q Consensus 196 ~ 196 (493)
-
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 5
No 71
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.6e-13 Score=111.74 Aligned_cols=78 Identities=22% Similarity=0.375 Sum_probs=73.3
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
++|||+||+..++..+|..+|..||.|..|.|-.++ .|||||+|++..+|..|+..|+|..|.|..|+|.+++-.
T Consensus 11 ~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 11 TKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred ceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 899999999999999999999999999999998866 589999999999999999999999999999999999876
Q ss_pred Ccc
Q 011105 374 ADQ 376 (493)
Q Consensus 374 ~~~ 376 (493)
...
T Consensus 86 ~r~ 88 (195)
T KOG0107|consen 86 PRG 88 (195)
T ss_pred ccc
Confidence 553
No 72
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=6e-14 Score=114.24 Aligned_cols=76 Identities=22% Similarity=0.449 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
-.++|||+||+..+++.+|..+|..||+|.+|+|.+.+ -|||||+|+++.+|..|+..|++..|.|..|+|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 36899999999999999999999999999999998864 4899999999999999999999999999999999886
Q ss_pred c
Q 011105 198 A 198 (493)
Q Consensus 198 ~ 198 (493)
-
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 4
No 73
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.50 E-value=1.1e-13 Score=123.08 Aligned_cols=76 Identities=18% Similarity=0.341 Sum_probs=71.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecccc
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~ 198 (493)
.++|||+|||+.+|+++|++||+.||.|.+|.|+.++. ++|||||+|.+.++|..||. |++..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998864 57999999999999999996 999999999999998763
No 74
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=5.2e-15 Score=120.82 Aligned_cols=82 Identities=17% Similarity=0.355 Sum_probs=77.6
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
+.-|||+|||+.+|+.+|.-+|++||.|+.|.+++|+.|++++||||+.|++..+..-|+..|||..|.||.|+|.-...
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999987655
Q ss_pred CC
Q 011105 373 QA 374 (493)
Q Consensus 373 ~~ 374 (493)
..
T Consensus 115 Yk 116 (219)
T KOG0126|consen 115 YK 116 (219)
T ss_pred cc
Confidence 43
No 75
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1.9e-13 Score=112.00 Aligned_cols=77 Identities=26% Similarity=0.525 Sum_probs=69.1
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||.++.+.+|.++|-+||.|..|.|..... .-.||||+|++..+|..||..-+|..++|+.|+|.|+..
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g---~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG---PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC---CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 38999999999999999999999999999998854432 136999999999999999999999999999999999754
No 76
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=6.7e-14 Score=125.02 Aligned_cols=82 Identities=29% Similarity=0.467 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+...++|+|.|||+...+-||+.+|.+||+|.+|.|+.+. .-+|||+||+|.+.++|.+|-+.||+..|.||+|.|..
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 3455789999999999999999999999999999999875 46999999999999999999999999999999999998
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+...
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 8753
No 77
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.1e-13 Score=122.07 Aligned_cols=80 Identities=20% Similarity=0.472 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
.=+||||.-|+++++|..|+..|+.||+|..|+||.++.||+++|||||+|++..+...|.+..++..|.|+.|.|.+-.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999887543
No 78
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.46 E-value=3.7e-13 Score=117.62 Aligned_cols=77 Identities=19% Similarity=0.329 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
+.+.+|||+||++.+|+++|++||+.||.|.+|+|+++. ..++||||+|.++++|..|+. |++..|.++.|.|..+
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 356899999999999999999999999999999999984 466899999999999999996 9999999999999876
Q ss_pred c
Q 011105 197 Q 197 (493)
Q Consensus 197 ~ 197 (493)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 5
No 79
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=3.8e-13 Score=99.38 Aligned_cols=81 Identities=19% Similarity=0.372 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+.-.+.|||+|||+++|.+++.++|.+||.|..|+|=..+. .+|.|||.|++..+|++|+..|++..+.++.+.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 44578899999999999999999999999999999977754 789999999999999999999999999999999988
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
..+.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 7654
No 80
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.45 E-value=1.8e-12 Score=120.06 Aligned_cols=169 Identities=18% Similarity=0.348 Sum_probs=136.0
Q ss_pred cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCeee
Q 011105 199 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 278 (493)
Q Consensus 199 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 278 (493)
.+.+||+|+|+++.+.+|+++|......|..|.++.| ..+++++++.|+|++++.+++|++.|+. +.+.++.+.+.
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~lnk--~~~~GR~l~vK 119 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKLNK--YEVNGRELVVK 119 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHhhh--ccccCceEEEe
Confidence 4458999999999999999999876555999999997 6899999999999999999999999885 33444433332
Q ss_pred ecCC---------------------------------------------CCccc--------------------------
Q 011105 279 WADP---------------------------------------------RNAES-------------------------- 287 (493)
Q Consensus 279 ~~~~---------------------------------------------~~~~~-------------------------- 287 (493)
-... .....
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 2111 00000
Q ss_pred ----------ccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCC
Q 011105 288 ----------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357 (493)
Q Consensus 288 ----------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~ 357 (493)
-.+....++||.||.+.+....|++.|.-.|.|+.|.+-.++.+ .++|||.++|.++-.|.+||..|++
T Consensus 200 ~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG-~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 200 SASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEG-NSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecccc-ccCCeeEEEecchHHHHHHHHhhcc
Confidence 00001478999999999999999999999999999999999987 5699999999999999999999998
Q ss_pred ceecCeEEEEEecCC
Q 011105 358 YEIDGQVLDCSLAKP 372 (493)
Q Consensus 358 ~~~~g~~i~v~~a~~ 372 (493)
.-+..++..+.+..-
T Consensus 279 ~g~~~~~~~~Rl~~~ 293 (608)
T KOG4212|consen 279 QGLFDRRMTVRLDRI 293 (608)
T ss_pred CCCccccceeecccc
Confidence 777888888887543
No 81
>PLN03213 repressor of silencing 3; Provisional
Probab=99.45 E-value=3e-13 Score=126.99 Aligned_cols=77 Identities=19% Similarity=0.269 Sum_probs=71.5
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCH--HHHHHHHHhcCCceecCeEEEEEec
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAER--SSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~--~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
..+|||+||++.+++++|+.+|..||.|.+|.|++. ++ ||||||+|.+. .++.+||..|||..+.||.|+|..|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 379999999999999999999999999999999944 44 89999999987 7899999999999999999999999
Q ss_pred CCC
Q 011105 371 KPQ 373 (493)
Q Consensus 371 ~~~ 373 (493)
++.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 975
No 82
>PLN03213 repressor of silencing 3; Provisional
Probab=99.45 E-value=2.9e-13 Score=127.00 Aligned_cols=78 Identities=22% Similarity=0.519 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccH--HHHHHHHHHhCCCcccCceEEEec
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTK--ELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~--e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
...+|||+||++.+|+++|+.+|..||.|.+|.|+ +.+| ||||||+|.+. .++.+||..||+..|.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 45789999999999999999999999999999999 4556 99999999987 789999999999999999999999
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8754
No 83
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.2e-13 Score=116.33 Aligned_cols=84 Identities=31% Similarity=0.534 Sum_probs=80.8
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||++|...+++.-|...|-+||.|..|.|+.|..+++.|||+||+|.-.++|..||..||...|.||.|+|.+|+|
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcc
Q 011105 373 QADQ 376 (493)
Q Consensus 373 ~~~~ 376 (493)
..-.
T Consensus 90 ~kik 93 (298)
T KOG0111|consen 90 EKIK 93 (298)
T ss_pred cccc
Confidence 7544
No 84
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.43 E-value=1.8e-13 Score=114.22 Aligned_cols=80 Identities=25% Similarity=0.478 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
.-++|.|-||.+.+|.++|+.+|++||.|.+|.|..++.|..++|||||.|....+|+.|+++|++.+|.|+.|.|.+|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999998775
No 85
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.43 E-value=1.9e-11 Score=111.21 Aligned_cols=165 Identities=18% Similarity=0.228 Sum_probs=132.6
Q ss_pred cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCeee
Q 011105 199 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 278 (493)
Q Consensus 199 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 278 (493)
...+.|++|-..+++.+|.+.++.||+ |..+.++.. +..+.|+|.+.+.|..++.......+.+.+....++
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~fG~-i~yvt~~P~-------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~N 102 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNFGP-IAYVTCMPH-------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFN 102 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcCCc-eEEEEeccc-------cceeeeeeccccchhhheehhccCcccccCchhhcc
Confidence 346789999999999999999999999 888888764 457999999999999999887777788888777777
Q ss_pred ecCCCCc-----ccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHH
Q 011105 279 WADPRNA-----ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353 (493)
Q Consensus 279 ~~~~~~~-----~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~ 353 (493)
++..... .+........+.|-|--+.+|.+.|..++..+|+|.+|.|++.. .-.|.|+|++.+.|++|..
T Consensus 103 yStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-----gVQAmVEFdsv~~AqrAk~ 177 (494)
T KOG1456|consen 103 YSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-----GVQAMVEFDSVEVAQRAKA 177 (494)
T ss_pred cchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-----ceeeEEeechhHHHHHHHh
Confidence 6633211 11222222334456767889999999999999999999998863 2389999999999999999
Q ss_pred hcCCceec--CeEEEEEecCCCCcc
Q 011105 354 NTEKYEID--GQVLDCSLAKPQADQ 376 (493)
Q Consensus 354 ~l~~~~~~--g~~i~v~~a~~~~~~ 376 (493)
+|||..|. -++|+|.||+|...+
T Consensus 178 alNGADIYsGCCTLKIeyAkP~rln 202 (494)
T KOG1456|consen 178 ALNGADIYSGCCTLKIEYAKPTRLN 202 (494)
T ss_pred hcccccccccceeEEEEecCcceee
Confidence 99998885 379999999987543
No 86
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=3.2e-13 Score=104.75 Aligned_cols=81 Identities=26% Similarity=0.493 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
-.+..|||.++...+|+++|.+.|..||+|..+.|..++.||..+|||+|+|.+.+.|++|+..+|+..|.+..|.|.||
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 011105 197 Q 197 (493)
Q Consensus 197 ~ 197 (493)
-
T Consensus 150 F 150 (170)
T KOG0130|consen 150 F 150 (170)
T ss_pred E
Confidence 4
No 87
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.42 E-value=1.1e-12 Score=114.76 Aligned_cols=77 Identities=19% Similarity=0.141 Sum_probs=70.5
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
..+|||+||++.+|+++|+++|+.||.|.+|+|+++..+ ++||||+|.+.++|..|+. |+|..|.+++|.|.....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et---~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEY---ACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCc---ceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 379999999999999999999999999999999998543 5799999999999999996 899999999999998765
Q ss_pred C
Q 011105 373 Q 373 (493)
Q Consensus 373 ~ 373 (493)
.
T Consensus 81 y 81 (243)
T PLN03121 81 Y 81 (243)
T ss_pred c
Confidence 3
No 88
>smart00362 RRM_2 RNA recognition motif.
Probab=99.40 E-value=2e-12 Score=94.84 Aligned_cols=72 Identities=35% Similarity=0.609 Sum_probs=67.1
Q ss_pred eEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q 011105 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (493)
Q Consensus 295 ~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 368 (493)
+|+|+|||..+++++|+++|..||.|..+.+..+. +.++++|||+|.+.++|.+|+..+++..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999887 5568999999999999999999999999999999873
No 89
>smart00362 RRM_2 RNA recognition motif.
Probab=99.39 E-value=2.5e-12 Score=94.31 Aligned_cols=72 Identities=35% Similarity=0.730 Sum_probs=67.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEe
Q 011105 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (493)
Q Consensus 121 ~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~ 194 (493)
+|||+|||..++.++|+++|..||.|..+.+..+. +.++++|||+|.+.++|.+|++.+++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 59999999999999999999999999999999876 6789999999999999999999999999999998873
No 90
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.38 E-value=7.4e-13 Score=108.64 Aligned_cols=78 Identities=28% Similarity=0.473 Sum_probs=76.7
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
.+|||+||+..++++.|+++|-+.|.|++++|++++.+...+|||||+|.++++|.-|++.||...|.||+|+|..+.
T Consensus 10 ~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 10 ATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred ceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999998
No 91
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=1.7e-12 Score=100.72 Aligned_cols=83 Identities=16% Similarity=0.249 Sum_probs=79.2
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.-.|||.++...+|+++|.+.|..||.|+.|.+-.++.++..+|||+|+|++...|++|+..||+..|-|..|.|.|+-.
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCc
Q 011105 373 QAD 375 (493)
Q Consensus 373 ~~~ 375 (493)
+..
T Consensus 152 ~gp 154 (170)
T KOG0130|consen 152 KGP 154 (170)
T ss_pred cCC
Confidence 644
No 92
>smart00360 RRM RNA recognition motif.
Probab=99.36 E-value=3.4e-12 Score=93.25 Aligned_cols=71 Identities=37% Similarity=0.586 Sum_probs=66.9
Q ss_pred EccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q 011105 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (493)
Q Consensus 298 v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 368 (493)
|+|||..+++++|+++|+.||.|..+.+..++.++.++++|||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999988778889999999999999999999999999999999873
No 93
>smart00360 RRM RNA recognition motif.
Probab=99.34 E-value=6.1e-12 Score=91.84 Aligned_cols=71 Identities=38% Similarity=0.784 Sum_probs=67.1
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEe
Q 011105 124 LGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (493)
Q Consensus 124 V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~ 194 (493)
|+|||..+++++|+++|+.||.|..+.+..++.++.++++|||+|.+.++|..|+..+++..+.++.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988788999999999999999999999999999999998873
No 94
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.3e-12 Score=110.00 Aligned_cols=84 Identities=25% Similarity=0.521 Sum_probs=80.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
...++|||++|...+|+.-|...|-.||.|..|.+..|-.+.+.||||||+|...++|..||..||..+|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 011105 197 QAKH 200 (493)
Q Consensus 197 ~~~~ 200 (493)
.+.+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8754
No 95
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.32 E-value=9.7e-12 Score=86.11 Aligned_cols=56 Identities=32% Similarity=0.512 Sum_probs=51.9
Q ss_pred HHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 310 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 310 l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
|+++|++||.|..|.+.... +++|||+|.+.++|..|+..||+..|.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998876 589999999999999999999999999999999986
No 96
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.31 E-value=1.7e-11 Score=90.35 Aligned_cols=74 Identities=35% Similarity=0.605 Sum_probs=68.9
Q ss_pred eEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q 011105 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (493)
Q Consensus 295 ~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 369 (493)
+|+|+|||..+++++|+++|..||.|..+.+..+..+ ..+++|||+|.+.++|..|+..+++..+.+++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988766 4588999999999999999999999999999999875
No 97
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.29 E-value=7.1e-12 Score=121.30 Aligned_cols=79 Identities=32% Similarity=0.656 Sum_probs=77.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecccc
Q 011105 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~ 198 (493)
+.|||+|||+++++++|..+|+..|.|.+++++.|+.||+.+||||++|.+.++|.+|++.||+..+.||+|+|.++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999998764
No 98
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.29 E-value=1.5e-10 Score=115.07 Aligned_cols=78 Identities=23% Similarity=0.500 Sum_probs=73.0
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
++||||+.|+..+++.+|.++|+.||.|.+|.++.. +++|||...+..+|.+|+.+|++..+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 689999999999999999999999999999999876 68999999999999999999999999999999999986
Q ss_pred CCcc
Q 011105 373 QADQ 376 (493)
Q Consensus 373 ~~~~ 376 (493)
...+
T Consensus 495 ~G~k 498 (894)
T KOG0132|consen 495 KGPK 498 (894)
T ss_pred CCcc
Confidence 5443
No 99
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.28 E-value=3.2e-11 Score=88.81 Aligned_cols=74 Identities=38% Similarity=0.743 Sum_probs=68.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 121 ~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+|+|+|||+.+++++|+++|..||.|..+.+..+..+ ..+++|||+|.+.++|..|+..+++..+.+++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999988764 7789999999999999999999999999999998853
No 100
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1e-10 Score=111.62 Aligned_cols=171 Identities=19% Similarity=0.310 Sum_probs=118.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeC--CCCCCcce---EEEEEeccHHHHHHHHHHhCCCcccCce
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG--KDSGEAKG---YAFVTFRTKELASQAIEELNSCELKGKK 190 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~--~~~g~~~g---~afV~F~~~e~A~~Al~~l~~~~i~g~~ 190 (493)
+.-++.|||++||++++|+.|...|..||.+.-=.-.+. ...-..+| |+|+.|+++..+...|.++.- .-..-.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~~y 334 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGNYY 334 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccceE
Confidence 445678999999999999999999999998763222111 11123455 999999999999888876543 122223
Q ss_pred EEEecccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCccc
Q 011105 191 IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 270 (493)
Q Consensus 191 i~V~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~ 270 (493)
|.|...+.+.+ .|- |+.+.+-.. -||.+
T Consensus 335 f~vss~~~k~k-~VQ---------------------IrPW~laDs----------~fv~d-------------------- 362 (520)
T KOG0129|consen 335 FKVSSPTIKDK-EVQ---------------------IRPWVLADS----------DFVLD-------------------- 362 (520)
T ss_pred EEEecCccccc-cee---------------------EEeeEeccc----------hhhhc--------------------
Confidence 33332221111 000 222222211 01100
Q ss_pred CCCCCeeeecCCCCcccccccccceEEEccCCCCCCHHHHHHHHh-cCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHH
Q 011105 271 DDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFA-HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349 (493)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~ 349 (493)
.+......+||||++||.-++.++|..+|+ -||.|..+-|-+|+.-+..+|-|-|+|.+..+-.
T Consensus 363 ---------------~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi 427 (520)
T KOG0129|consen 363 ---------------HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYI 427 (520)
T ss_pred ---------------cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHH
Confidence 011222338999999999999999999999 8999999999999888888999999999999999
Q ss_pred HHHHh
Q 011105 350 KALKN 354 (493)
Q Consensus 350 ~a~~~ 354 (493)
+||.+
T Consensus 428 ~AIsa 432 (520)
T KOG0129|consen 428 KAISA 432 (520)
T ss_pred HHHhh
Confidence 99986
No 101
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.28 E-value=8.7e-12 Score=120.67 Aligned_cols=82 Identities=20% Similarity=0.432 Sum_probs=79.6
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
+.|||+|||+++++++|..+|+..|.|.+++++.|+.+++.+||+|++|.+.++|..|++.||+..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred Cc
Q 011105 374 AD 375 (493)
Q Consensus 374 ~~ 375 (493)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 102
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.28 E-value=1.4e-11 Score=114.01 Aligned_cols=182 Identities=24% Similarity=0.339 Sum_probs=142.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
..+++|++++.+.+.+.++..++..+|.+..+.+........++++++|.|...+.+..||.......+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 57899999999999999999999999999888888877778999999999999999999998433345555554332221
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCee
Q 011105 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277 (493)
Q Consensus 198 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 277 (493)
... +. +.. .....
T Consensus 167 ~~~-~~-----------------------------~~n-------------------------------------~~~~~ 179 (285)
T KOG4210|consen 167 RRG-LR-----------------------------PKN-------------------------------------KLSRL 179 (285)
T ss_pred ccc-cc-----------------------------ccc-------------------------------------hhccc
Confidence 100 00 000 00000
Q ss_pred eecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCC
Q 011105 278 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357 (493)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~ 357 (493)
........++|.+|++.++.++|+.+|..+|.|..++++.+..++.++||+||.|.+...+..++.. ..
T Consensus 180 ----------~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~ 248 (285)
T KOG4210|consen 180 ----------SSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QT 248 (285)
T ss_pred ----------ccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-cc
Confidence 0000013445999999999999999999999999999999999999999999999999999999987 88
Q ss_pred ceecCeEEEEEecCCCCccC
Q 011105 358 YEIDGQVLDCSLAKPQADQK 377 (493)
Q Consensus 358 ~~~~g~~i~v~~a~~~~~~~ 377 (493)
..+.++++.|.+..+.....
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~ 268 (285)
T KOG4210|consen 249 RSIGGRPLRLEEDEPRPKSD 268 (285)
T ss_pred CcccCcccccccCCCCcccc
Confidence 99999999999998885543
No 103
>smart00361 RRM_1 RNA recognition motif.
Probab=99.28 E-value=1.5e-11 Score=89.35 Aligned_cols=62 Identities=16% Similarity=0.335 Sum_probs=54.6
Q ss_pred HHHHHHHHh----cCCcEEEEE-eCCCCCC--CCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q 011105 307 QDRLKELFA----HHGKITKVV-IPPAKPG--QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (493)
Q Consensus 307 ~~~l~~~f~----~~G~v~~v~-i~~~~~~--~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 368 (493)
+++|+++|+ .||.|.+|. |+.++.+ +.++||+||+|.+.++|.+|+..|||..+.||.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 567888888 999999995 6666555 7789999999999999999999999999999999863
No 104
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.27 E-value=3.7e-11 Score=115.59 Aligned_cols=83 Identities=30% Similarity=0.534 Sum_probs=71.8
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
..|||+|||.+++..+|+++|..||.|+...|......+...+||||+|.+.+++..||.+ +-..|++++|.|...++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 5599999999999999999999999999888776554444448999999999999999997 688899999999998886
Q ss_pred CccC
Q 011105 374 ADQK 377 (493)
Q Consensus 374 ~~~~ 377 (493)
....
T Consensus 368 ~~g~ 371 (419)
T KOG0116|consen 368 FRGN 371 (419)
T ss_pred cccc
Confidence 5543
No 105
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=1.4e-12 Score=130.87 Aligned_cols=232 Identities=16% Similarity=0.188 Sum_probs=188.5
Q ss_pred CCCCeEEEcCCCCCCCHH-HHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 117 PHGSEVYLGGIPHDASDD-DLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~-~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
...+.+.+.|+.+..... ..+..|..++.|..|++......-..-.+.++.+....+++.|.. ..+..+.++.+.|..
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ 647 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGL 647 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCC
Confidence 344567778887776666 567899999999999987743323333488999999999999987 777778888887776
Q ss_pred cccc----------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHH
Q 011105 196 AQAK----------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 259 (493)
Q Consensus 196 ~~~~----------------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 259 (493)
+.+. .++|++||+..+.+.+|...|..++. +..+++.. ....++-+|+||+.|.....+.+|
T Consensus 648 ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~-~e~vqi~~-h~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 648 ADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGT-IEVVQIVI-HKNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccch-hhhHHHHH-HhhccccccceeeEeecCCchhhh
Confidence 6532 36899999999999999999999986 66666663 367788999999999999999999
Q ss_pred HHHcCCCCcccCCCCCeeeecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEE
Q 011105 260 RQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339 (493)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~f 339 (493)
+.......+. ...|+|+|+|+..|.+.|+.+|..+|.+.+++++..+.+. .+|.||
T Consensus 726 V~f~d~~~~g-----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gk-pkg~a~ 781 (881)
T KOG0128|consen 726 VAFRDSCFFG-----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGK-PKGKAR 781 (881)
T ss_pred hhhhhhhhhh-----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccc-ccccee
Confidence 8765542221 1689999999999999999999999999999988887654 499999
Q ss_pred EEeCCHHHHHHHHHhcCCceecCeEEEEEecCCCCc
Q 011105 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375 (493)
Q Consensus 340 V~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~ 375 (493)
|.|.+..+|.+++.......+.-+-+.|..+.|...
T Consensus 782 v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~ 817 (881)
T KOG0128|consen 782 VDYNTEADASRKVASVDVAGKRENNGEVQVSNPERD 817 (881)
T ss_pred ccCCCcchhhhhcccchhhhhhhcCccccccCCccc
Confidence 999999999999998888888888888888877433
No 106
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.26 E-value=2.2e-10 Score=113.80 Aligned_cols=76 Identities=24% Similarity=0.526 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
-.++||||+.|+.++++.+|..+|+.||.|.+|.++. +++||||.+....+|.+||.+|+...+..+.|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 3578999999999999999999999999999999976 5689999999999999999999999999999999988
Q ss_pred cc
Q 011105 197 QA 198 (493)
Q Consensus 197 ~~ 198 (493)
..
T Consensus 493 ~g 494 (894)
T KOG0132|consen 493 VG 494 (894)
T ss_pred cc
Confidence 63
No 107
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.24 E-value=3.5e-11 Score=114.39 Aligned_cols=80 Identities=31% Similarity=0.564 Sum_probs=77.1
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+.+|+++|+++|..||.|..|.+..++.++.++|||||+|.+.++|..|+..+++..|.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 38999999999999999999999999999999999998899999999999999999999999999999999999999764
No 108
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.21 E-value=2.3e-11 Score=111.03 Aligned_cols=143 Identities=22% Similarity=0.280 Sum_probs=116.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcc----CCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 120 SEVYLGGIPHDASDDDLRHFCKSI----GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~~~f~~~----G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
-.|.+++||+++|+.++..||..- |-+..|.++...+ |+..|-|||.|..+++|..||. .|...|.-|.|.+..
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFR 239 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHH
Confidence 468899999999999999999632 3455677777655 9999999999999999999997 566566666665544
Q ss_pred cc-------------------------------------ccccccccCCCCCCCHHHHHHHHHhhCCCeeE--EEEecCC
Q 011105 196 AQ-------------------------------------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS--IELVKDP 236 (493)
Q Consensus 196 ~~-------------------------------------~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~--~~~~~~~ 236 (493)
++ .+.+|.+++||+..+.++|..+|..|...|.. +.++.
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~-- 317 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL-- 317 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE--
Confidence 32 34588999999999999999999999875655 66665
Q ss_pred CCCCCCcceEEEeeCCHHHHHHHHHHcCCC
Q 011105 237 QNANQNRGFAFIEYYNHACAEYSRQKMSNP 266 (493)
Q Consensus 237 ~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 266 (493)
+..|+..|-|||+|.+.+.|..|..+.+++
T Consensus 318 N~qGrPSGeAFIqm~nae~a~aaaqk~hk~ 347 (508)
T KOG1365|consen 318 NGQGRPSGEAFIQMRNAERARAAAQKCHKK 347 (508)
T ss_pred cCCCCcChhhhhhhhhhHHHHHHHHHHHHh
Confidence 577999999999999999999998877653
No 109
>smart00361 RRM_1 RNA recognition motif.
Probab=99.20 E-value=7.3e-11 Score=85.67 Aligned_cols=61 Identities=28% Similarity=0.476 Sum_probs=55.8
Q ss_pred HHHHHHHhh----ccCCeeEEE-EeeCCCC--CCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEE
Q 011105 133 DDDLRHFCK----SIGEVTEVR-IMKGKDS--GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC 193 (493)
Q Consensus 133 e~~l~~~f~----~~G~v~~v~-i~~~~~~--g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V 193 (493)
+++|+++|+ .||.|.+|. |+.++.+ +.++|||||+|.+.++|.+|+..||+..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999996 7777766 899999999999999999999999999999999976
No 110
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.3e-11 Score=111.40 Aligned_cols=84 Identities=19% Similarity=0.438 Sum_probs=79.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
.++...|||..|.+-+|.++|.-+|+.||.|.+|.|+++..||.+..||||+|.+.+++.+|.-.|++..|..++|.|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 35668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+.+-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 8753
No 111
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.18 E-value=5e-10 Score=109.83 Aligned_cols=249 Identities=12% Similarity=0.058 Sum_probs=141.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTE-VRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~-v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
.+..|||..||..+++.++.++|...-.|++ |.|.+. .+++.++.|||.|..++++.+|+...+.+.+..+.|+|...
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 4568999999999999999999998888887 555554 45889999999999999999999878888889899999765
Q ss_pred cccc-------------------------------------cccccCCC-CCCCHHHHHHHHHhhCCCeeEEEEecCCCC
Q 011105 197 QAKH-------------------------------------RLFIGNVP-RNWGEDDMRKAVTKIGPGVISIELVKDPQN 238 (493)
Q Consensus 197 ~~~~-------------------------------------~l~v~~l~-~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~ 238 (493)
.... +-.+.+.+ +.++....+......-.......+.. .+
T Consensus 512 ~~~~m~~ek~~~~~~~lq~~~~dqre~~l~~p~~~v~~~~~~~~~~~~~~F~~~~rr~~~e~~~~~~~~n~~p~~~--dN 589 (944)
T KOG4307|consen 512 ADYAMMMEKNGEQGIKLQQSDKDQRETALDGPIPSVSMVPSKEQRSHEDDFDKKSRRSRWENTSPIRSPNRSPLRR--DN 589 (944)
T ss_pred hhHHHHHHHhHHHHHHHhhhhhHHHHHhhcCCccchhhhhhhhhhccCcccccchHHHHhhhcCCccCcccccccc--cc
Confidence 3211 11122222 12222222222211110011111222 34
Q ss_pred CCCCcceEEEeeCCHHHHHHHH----HHcCCCCcccCCCCCeeeecCCCCcccccccccceEE-------------EccC
Q 011105 239 ANQNRGFAFIEYYNHACAEYSR----QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALY-------------VKNL 301 (493)
Q Consensus 239 ~~~~~g~~fv~f~~~~~a~~a~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------------v~nl 301 (493)
.+.+++.+||.|.+...+..-+ ..+++..+.... .....|....... ....++++ +..|
T Consensus 590 ~~~~~~~~~v~~~n~p~~r~~~~~~~~~vnn~pF~m~~-~~~~~~~sekn~P---a~~~~~~~~gv~~~p~v~~~~~~~l 665 (944)
T KOG4307|consen 590 RDRSRSRSPVRRRNSPRRREEHTRWCVQVNNVPFRMKD-EELLEWFSEKNRP---AKLTRTFYDGVASDPWVAEFSSESL 665 (944)
T ss_pred CCcccccCccccCCCccccchhhhhhhcccCcceeecc-hhhhhhhcccCCc---ccccccccCCCCCCccccccccccc
Confidence 5677788899888765554433 334443332221 1112221111110 01112222 2222
Q ss_pred CCCCCHHHHHHHHhc-CCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCCCc
Q 011105 302 PKDITQDRLKELFAH-HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375 (493)
Q Consensus 302 ~~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~ 375 (493)
+. +..-.|..+|.- .-.+..|.-++... -.+-|..+++|.+.-..+.||...+...++++.+.+.-+.++..
T Consensus 666 ~~-~r~~~~g~l~tg~~lr~~~i~~~~~~~-~~~~g~~~~e~~~~~~ee~a~~~~~~~~an~~~~fn~p~~~~gs 738 (944)
T KOG4307|consen 666 MK-RRSFGIGTLCTGRTLRLRYIDNAKADE-ILKIGDVYGEGKRQMNEEAALQHEVAEKANPPSFFNAPAATRGS 738 (944)
T ss_pred cc-ccCCCccccccCcccccchhhhhhhcc-ccccccceeccCCccchhHHHHHHhhhhccCCCccccccccccc
Confidence 22 111222333321 11122222222221 12257889999999999999999999999999888877776643
No 112
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=1.6e-10 Score=111.19 Aligned_cols=72 Identities=29% Similarity=0.461 Sum_probs=65.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK 192 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~ 192 (493)
....++|+|-|||.++++++|+.+|+.||+|..|+.-+ ..++.+||+|.+..+|++|++.|++..|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 44678999999999999999999999999999976544 4679999999999999999999999999999887
No 113
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.17 E-value=3.9e-11 Score=105.79 Aligned_cols=74 Identities=30% Similarity=0.625 Sum_probs=69.9
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
.+|||+|||..+++.+|+.+|++||+|..|.|+++ |+||..++...|..||..||+.+|+|..|.|.-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 57999999999999999999999999999999864 9999999999999999999999999999999999987
Q ss_pred Cc
Q 011105 374 AD 375 (493)
Q Consensus 374 ~~ 375 (493)
+.
T Consensus 75 sk 76 (346)
T KOG0109|consen 75 SK 76 (346)
T ss_pred CC
Confidence 43
No 114
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.16 E-value=1.3e-10 Score=80.36 Aligned_cols=56 Identities=41% Similarity=0.673 Sum_probs=50.9
Q ss_pred HHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 136 LRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 136 l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
|+++|++||.|..+.+.... +++|||+|.+.++|.+|++.||+..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998764 589999999999999999999999999999999875
No 115
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=7.7e-11 Score=106.50 Aligned_cols=82 Identities=20% Similarity=0.372 Sum_probs=78.8
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
+.|||.-|.+-+|+++|.-+|+.||+|.+|.|+++..++-+-.||||+|++.+++.+|.-+|++..|+.|+|.|.|+..-
T Consensus 240 NVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSV 319 (479)
T KOG0415|consen 240 NVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSV 319 (479)
T ss_pred ceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred Cc
Q 011105 374 AD 375 (493)
Q Consensus 374 ~~ 375 (493)
+.
T Consensus 320 sk 321 (479)
T KOG0415|consen 320 SK 321 (479)
T ss_pred hh
Confidence 44
No 116
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=8.3e-11 Score=102.27 Aligned_cols=85 Identities=20% Similarity=0.470 Sum_probs=80.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
-+++|+|||..||....+.+|..+|-.||.|++.+++.|+.|+.++.|+||.|.++.+|..||..+||..|.=++|+|..
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
-+++.
T Consensus 362 KRPkd 366 (371)
T KOG0146|consen 362 KRPKD 366 (371)
T ss_pred cCccc
Confidence 66543
No 117
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.10 E-value=7.2e-10 Score=108.74 Aligned_cols=166 Identities=14% Similarity=0.086 Sum_probs=110.4
Q ss_pred ccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCC----CCcccCC-----
Q 011105 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN----PKFKLDD----- 272 (493)
Q Consensus 202 l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~----~~~~~~~----- 272 (493)
+.+.+.+.+....+++++|...- |....|..+ .-.....|.++|.|...+.+.+|++.... +.+.+..
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~~--~~~~~l~~~-~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~~ 390 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGRN--AQSTDLSEN-RVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNLG 390 (944)
T ss_pred eeecccccccccchhhhhcCccc--ccccchhhh-hcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCccc
Confidence 34456667777888899887665 555555554 22333478899999999999999865432 1111110
Q ss_pred ---------------------CCCeeeecCCCCcc--cccccccceEEEccCCCCCCHHHHHHHHhcCCcEEE-EEeCCC
Q 011105 273 ---------------------NAPTVSWADPRNAE--SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITK-VVIPPA 328 (493)
Q Consensus 273 ---------------------~~~~~~~~~~~~~~--~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~-v~i~~~ 328 (493)
+.+....+...... ........+|||..||..++..++.++|...-.|++ |.|.+-
T Consensus 391 ~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~ 470 (944)
T KOG4307|consen 391 RNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL 470 (944)
T ss_pred cccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC
Confidence 00000000000000 011223689999999999999999999998777877 655555
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 329 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 329 ~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
.. .+.++.|||.|..++++..|+..-+.+.+..|.|+|.-..
T Consensus 471 P~-~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 471 PT-DLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred Cc-ccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 44 4448899999999999988888777888888889987543
No 118
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=2.2e-11 Score=102.87 Aligned_cols=138 Identities=24% Similarity=0.331 Sum_probs=114.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
++..+||||.||...++++-|.++|-+.|+|..|.|..+++ +..+ ||||.|.++-.+.-|++.+|+..+.++.|.|.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~- 82 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT- 82 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc-
Confidence 45678999999999999999999999999999999988876 5566 99999999999999999999999988887653
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCC
Q 011105 196 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 275 (493)
Q Consensus 196 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 275 (493)
T Consensus 83 -------------------------------------------------------------------------------- 82 (267)
T KOG4454|consen 83 -------------------------------------------------------------------------------- 82 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeecCCCCcccccccccceEEEcc----CCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHH
Q 011105 276 TVSWADPRNAESSAASQVKALYVKN----LPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351 (493)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~v~n----l~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a 351 (493)
++.++ |...++.+.+..+|+..+.|..+++.++.+ ++.+.++||++-.....-.+
T Consensus 83 --------------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~ 141 (267)
T KOG4454|consen 83 --------------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFA 141 (267)
T ss_pred --------------------cccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHH
Confidence 23333 445678888889999999999999999988 44578999998776666666
Q ss_pred HHhcCC
Q 011105 352 LKNTEK 357 (493)
Q Consensus 352 ~~~l~~ 357 (493)
+....+
T Consensus 142 ~~~y~~ 147 (267)
T KOG4454|consen 142 LDLYQG 147 (267)
T ss_pred hhhhcc
Confidence 665444
No 119
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.06 E-value=5e-10 Score=94.41 Aligned_cols=80 Identities=21% Similarity=0.474 Sum_probs=76.2
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcC-CcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHH-GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
..++|..+|..+.+..|..+|.+| |.|..+++-+++.||.++|||||+|++.+.|.-|-+.||++.|.++.|.|.+-.|
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 679999999999999999999988 7888999999999999999999999999999999999999999999999999877
Q ss_pred C
Q 011105 373 Q 373 (493)
Q Consensus 373 ~ 373 (493)
.
T Consensus 130 e 130 (214)
T KOG4208|consen 130 E 130 (214)
T ss_pred h
Confidence 6
No 120
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.04 E-value=1.1e-09 Score=105.03 Aligned_cols=82 Identities=27% Similarity=0.498 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
...+++|||.+|...+.-.+|+.+|++||+|+-.+|+.+..+--.+.|+||++.+.++|.+||+.||.+.|+|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 45678999999999999999999999999999999999988778899999999999999999999999999999999998
Q ss_pred cc
Q 011105 196 AQ 197 (493)
Q Consensus 196 ~~ 197 (493)
++
T Consensus 482 aK 483 (940)
T KOG4661|consen 482 AK 483 (940)
T ss_pred cc
Confidence 76
No 121
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.01 E-value=1.1e-09 Score=94.02 Aligned_cols=80 Identities=30% Similarity=0.470 Sum_probs=73.2
Q ss_pred ceEEEccCCCCCCHHHHHH----HHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q 011105 294 KALYVKNLPKDITQDRLKE----LFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~----~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 369 (493)
.+|||.||...+..++|+. +|++||.|..|...+. .+.||.|||.|.+.+.|..|+.+|+|+.|-|++++|.|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 5999999999999999888 9999999999998764 34589999999999999999999999999999999999
Q ss_pred cCCCCcc
Q 011105 370 AKPQADQ 376 (493)
Q Consensus 370 a~~~~~~ 376 (493)
|+..+.-
T Consensus 87 A~s~sdi 93 (221)
T KOG4206|consen 87 AKSDSDI 93 (221)
T ss_pred ccCccch
Confidence 9987653
No 122
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.00 E-value=1.3e-09 Score=91.88 Aligned_cols=83 Identities=30% Similarity=0.570 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc-CCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSI-GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
.....++|..||.-+-+..|..+|.+| |.|..+++.+++.||.++|||||+|.+++.|.-|.+.||+..|.++.|.|..
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 455689999999999999999999988 8899999999999999999999999999999999999999999999988876
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
..+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 5443
No 123
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=2.7e-09 Score=104.01 Aligned_cols=152 Identities=25% Similarity=0.491 Sum_probs=119.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+.....|||++||..+++.++++++..||.+....++.+..+|.++||||.+|.+......|+..|||..+.++.|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccccc----------cccCCCC-----------------CCCH-------------HHHHHHHHhhCCCeeEEEEecC
Q 011105 196 AQAKHRL----------FIGNVPR-----------------NWGE-------------DDMRKAVTKIGPGVISIELVKD 235 (493)
Q Consensus 196 ~~~~~~l----------~v~~l~~-----------------~~~~-------------~~l~~~f~~~g~~v~~~~~~~~ 235 (493)
+-..... -|-.|+. .++. ++++.-+..||. |..|.+.+.
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~-v~~v~ipr~ 444 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGA-VRSVEIPRP 444 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCc-eeEEecCCC
Confidence 6422100 0111111 1122 234555667887 888888776
Q ss_pred -C-CCCCCCcceEEEeeCCHHHHHHHHHHcCCCCc
Q 011105 236 -P-QNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 268 (493)
Q Consensus 236 -~-~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~ 268 (493)
. .......|..||+|.+..++++|++.|+++.+
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF 479 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKF 479 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCcee
Confidence 2 22334567789999999999999999999654
No 124
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=4e-10 Score=113.94 Aligned_cols=163 Identities=18% Similarity=0.268 Sum_probs=132.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
...++|||++||+..+++.+|+..|..+|.|.+|.|-.-.. +.-..|+||.|.+...+-+|...+.+..|..-.+++.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 45678999999999999999999999999999999866543 55667999999999999888877777655443333321
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCC
Q 011105 196 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 275 (493)
Q Consensus 196 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 275 (493)
...
T Consensus 448 G~~----------------------------------------------------------------------------- 450 (975)
T KOG0112|consen 448 GQP----------------------------------------------------------------------------- 450 (975)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 110
Q ss_pred eeeecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 011105 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355 (493)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l 355 (493)
....++.|+|++|..++....|...|..||.|..|.+-... -|++|.|.+...|+.|+..|
T Consensus 451 -------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~~aq~a~~~~ 511 (975)
T KOG0112|consen 451 -------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPPAAQAATHDM 511 (975)
T ss_pred -------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCccchhhHHHH
Confidence 00012789999999999999999999999999998885443 49999999999999999999
Q ss_pred CCceecC--eEEEEEecCCCCc
Q 011105 356 EKYEIDG--QVLDCSLAKPQAD 375 (493)
Q Consensus 356 ~~~~~~g--~~i~v~~a~~~~~ 375 (493)
.+..|.+ ++|.|.|+.+...
T Consensus 512 rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 512 RGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred hcCcCCCCCcccccccccCCCC
Confidence 9999987 7899999987644
No 125
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.94 E-value=7.1e-10 Score=102.87 Aligned_cols=83 Identities=24% Similarity=0.432 Sum_probs=77.4
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||++|+|.++++.|++.|.+||.|..|.+++++.+++++||+||+|++.+.+.++|.. ..+.|.|+.|.+..|.+
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceeccC
Confidence 38999999999999999999999999999999999999999999999999999999998874 67889999999999998
Q ss_pred CCcc
Q 011105 373 QADQ 376 (493)
Q Consensus 373 ~~~~ 376 (493)
+...
T Consensus 85 r~~~ 88 (311)
T KOG4205|consen 85 REDQ 88 (311)
T ss_pred cccc
Confidence 8644
No 126
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.94 E-value=7.2e-10 Score=96.11 Aligned_cols=173 Identities=12% Similarity=0.218 Sum_probs=128.8
Q ss_pred CCeEEEcCCCCCCCHHH-H--HHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 119 GSEVYLGGIPHDASDDD-L--RHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~-l--~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
-..+++.++-..+..+- | ...|+.+-.+...+++++.. +..++++|+.|.....-.++-..-+++.+.-..|++..
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~ 174 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA 174 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceeecc
Confidence 34566777666555544 3 56777777777777777765 78899999999887777766655555555555444322
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCC
Q 011105 196 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 275 (493)
Q Consensus 196 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 275 (493)
.+.... ..
T Consensus 175 gtswed------------------------------------------------------------------------Ps 182 (290)
T KOG0226|consen 175 GTSWED------------------------------------------------------------------------PS 182 (290)
T ss_pred ccccCC------------------------------------------------------------------------cc
Confidence 211000 00
Q ss_pred eeeecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 011105 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355 (493)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l 355 (493)
.+.| ...-.+||++.|...++++.|-..|.+|-.....++++++.+++++||+||.|.+..++..|+..|
T Consensus 183 l~ew----------~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 183 LAEW----------DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred cccC----------ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhh
Confidence 0011 111278999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceecCeEEEEEecCCCC
Q 011105 356 EKYEIDGQVLDCSLAKPQA 374 (493)
Q Consensus 356 ~~~~~~g~~i~v~~a~~~~ 374 (493)
+|..++.|+|++..+..+.
T Consensus 253 ~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 253 NGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred cccccccchhHhhhhhHHh
Confidence 9999999999887766554
No 127
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=3.3e-09 Score=96.22 Aligned_cols=77 Identities=27% Similarity=0.502 Sum_probs=69.4
Q ss_pred ccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHh-cCCceecCeEEEEE
Q 011105 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN-TEKYEIDGQVLDCS 368 (493)
Q Consensus 290 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~-l~~~~~~g~~i~v~ 368 (493)
.....+|||++|-..+++.+|+++|-+||.|..|+++.. +++|||+|.+.++|+.|... +|...|+|++|.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 334689999999889999999999999999999999876 46999999999999888776 57788899999999
Q ss_pred ecCC
Q 011105 369 LAKP 372 (493)
Q Consensus 369 ~a~~ 372 (493)
|..+
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9998
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.90 E-value=2.8e-09 Score=102.32 Aligned_cols=80 Identities=24% Similarity=0.421 Sum_probs=75.5
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||.+|+..+...+|+.+|++||+|+-.+++++..+.--++|+||++.+.++|.+||..||...|.||.|.|..++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 58999999999999999999999999999999999887777789999999999999999999999999999999999874
No 129
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.79 E-value=4.7e-08 Score=83.27 Aligned_cols=87 Identities=24% Similarity=0.400 Sum_probs=71.9
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeC-CCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceec---CeEEEEE
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIP-PAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID---GQVLDCS 368 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~-~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~---g~~i~v~ 368 (493)
.++|||.+||.++...+|..+|..|--.+.+.|. .++....++-+|||+|.+.+.|..|+.+|||..|+ +..|+|.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 5999999999999999999999998665544443 33444445679999999999999999999999997 6789999
Q ss_pred ecCCCCccCCC
Q 011105 369 LAKPQADQKTS 379 (493)
Q Consensus 369 ~a~~~~~~~~~ 379 (493)
+|+.+..+...
T Consensus 114 lAKSNtK~kr~ 124 (284)
T KOG1457|consen 114 LAKSNTKRKRR 124 (284)
T ss_pred ehhcCcccccC
Confidence 99988765543
No 130
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.73 E-value=2.9e-08 Score=90.23 Aligned_cols=76 Identities=32% Similarity=0.545 Sum_probs=67.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHh-CCCcccCceEEEec
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL-NSCELKGKKIKCSA 195 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l-~~~~i~g~~i~V~~ 195 (493)
...++|||++|-..+++.+|+++|.+||+|.++.++... ++|||+|.+.++|+.|.+.+ +...|.|++|.|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 456799999999999999999999999999999998764 59999999999999987754 55668999999998
Q ss_pred ccc
Q 011105 196 AQA 198 (493)
Q Consensus 196 ~~~ 198 (493)
..+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 876
No 131
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.73 E-value=2.2e-09 Score=98.61 Aligned_cols=212 Identities=14% Similarity=0.163 Sum_probs=132.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCC---CCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDS---GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
..|.|.||.+++|.++|..||..+|+|..+.|+..... ......|||.|.+...+..|-. |..+++-++.|.|.+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 48999999999999999999999999999999875432 3455689999999999988876 8888888888877544
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCe
Q 011105 197 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 276 (493)
Q Consensus 197 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 276 (493)
... +.... .+|..++.....-.++.. .+ |.|.+ .++...++...
T Consensus 87 ~~~-----------~~p~r--~af~~l~~~navprll~p---dg-------~Lp~~-------------~~lt~~nh~p~ 130 (479)
T KOG4676|consen 87 GDE-----------VIPDR--FAFVELADQNAVPRLLPP---DG-------VLPGD-------------RPLTKINHSPN 130 (479)
T ss_pred CCC-----------CCccH--HHHHhcCcccccccccCC---CC-------ccCCC-------------CccccccCCcc
Confidence 211 11111 144444321110011100 00 00000 00000000000
Q ss_pred eeecCCCCcc----cccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHH
Q 011105 277 VSWADPRNAE----SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352 (493)
Q Consensus 277 ~~~~~~~~~~----~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~ 352 (493)
.-...|.... .......++|+|.+|+..+...++.++|..+|.|...++-.... .-+|.|+|........|+
T Consensus 131 ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~----s~~c~~sf~~qts~~hal 206 (479)
T KOG4676|consen 131 AILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSR----SSSCSHSFRKQTSSKHAL 206 (479)
T ss_pred ceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCC----CcchhhhHhhhhhHHHHH
Confidence 0000011100 01112237899999999999999999999999999887754432 347889999999999999
Q ss_pred HhcCCceecCeEEEEEecCCC
Q 011105 353 KNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 353 ~~l~~~~~~g~~i~v~~a~~~ 373 (493)
. ++|+.+.-....+....|.
T Consensus 207 r-~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 207 R-SHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred H-hcchhhhhhhhhhhhcCcc
Confidence 8 4787776555555555543
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.70 E-value=2e-07 Score=83.19 Aligned_cols=82 Identities=26% Similarity=0.436 Sum_probs=75.0
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
.+|+|.||++.+++++|+++|..||.+..+.+-.++.+.+ .|.|-|.|...++|.+|++.+|+..++|++|++.+..+.
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s-~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRS-LGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCC-CccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 7899999999999999999999999998888888876544 899999999999999999999999999999999998877
Q ss_pred Ccc
Q 011105 374 ADQ 376 (493)
Q Consensus 374 ~~~ 376 (493)
...
T Consensus 163 ~~~ 165 (243)
T KOG0533|consen 163 SQS 165 (243)
T ss_pred ccc
Confidence 554
No 133
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.68 E-value=6.3e-07 Score=82.47 Aligned_cols=86 Identities=19% Similarity=0.278 Sum_probs=79.4
Q ss_pred ccccceEEEccCCCCCCHHHHHHHHhcCCcEE--------EEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceec
Q 011105 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKIT--------KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 361 (493)
Q Consensus 290 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~ 361 (493)
.....+|||.+||..++.++|.++|.+||.|. .|.|.+++.|...|+-|.|+|.+...|+.|+..+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 33458999999999999999999999999886 5788899999999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCc
Q 011105 362 GQVLDCSLAKPQAD 375 (493)
Q Consensus 362 g~~i~v~~a~~~~~ 375 (493)
+.+|+|.+|..+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999988765
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.67 E-value=8.8e-08 Score=85.43 Aligned_cols=83 Identities=23% Similarity=0.415 Sum_probs=74.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEe
Q 011105 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (493)
Q Consensus 115 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~ 194 (493)
.....++|+|.|||+.+++++|+++|..||.+..+.+-.++. |++.|.|-|.|...++|..|++.+++..+.|+.+.+.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 344558899999999999999999999999999888888866 9999999999999999999999999999999998887
Q ss_pred cccc
Q 011105 195 AAQA 198 (493)
Q Consensus 195 ~~~~ 198 (493)
...+
T Consensus 158 ~i~~ 161 (243)
T KOG0533|consen 158 IISS 161 (243)
T ss_pred EecC
Confidence 6554
No 135
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.67 E-value=1.4e-09 Score=109.64 Aligned_cols=134 Identities=24% Similarity=0.355 Sum_probs=115.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
...++||+||+..+.+.+|...|..+|.+..+.+....+.++.+|+|||.|...+.+.+||....++ +.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~-~~g--------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC-FFG--------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh-hhh---------
Confidence 3468999999999999999999999999988888866677999999999999999999999844444 444
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCC
Q 011105 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 265 (493)
Q Consensus 198 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 265 (493)
+..++|.|+|+..|.+.++.++..+|. +..++++. ...++.+|.+||.|.+..++.++......
T Consensus 736 -K~~v~i~g~pf~gt~e~~k~l~~~~gn-~~~~~~vt--~r~gkpkg~a~v~y~~ea~~s~~~~s~d~ 799 (881)
T KOG0128|consen 736 -KISVAISGPPFQGTKEELKSLASKTGN-VTSLRLVT--VRAGKPKGKARVDYNTEADASRKVASVDV 799 (881)
T ss_pred -hhhhheeCCCCCCchHHHHhhccccCC-ccccchhh--hhccccccceeccCCCcchhhhhcccchh
Confidence 456899999999999999999999998 87777666 46789999999999999999988766554
No 136
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.65 E-value=2.4e-07 Score=70.36 Aligned_cols=78 Identities=21% Similarity=0.236 Sum_probs=67.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhc--cCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCccc----CceEEE
Q 011105 120 SEVYLGGIPHDASDDDLRHFCKS--IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK----GKKIKC 193 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~----g~~i~V 193 (493)
+||.|+|||...|.+.|.+++.. .|...-+-+..|..++.+.|||||.|.+++.|.+..+.+++..|. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 79999999999999999988854 366777888888888999999999999999999999999999885 355666
Q ss_pred eccc
Q 011105 194 SAAQ 197 (493)
Q Consensus 194 ~~~~ 197 (493)
.+|+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6664
No 137
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.64 E-value=2.6e-08 Score=86.81 Aligned_cols=74 Identities=32% Similarity=0.407 Sum_probs=64.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCC--------CCcce----EEEEEeccHHHHHHHHHHhCCCc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDS--------GEAKG----YAFVTFRTKELASQAIEELNSCE 185 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~--------g~~~g----~afV~F~~~e~A~~Al~~l~~~~ 185 (493)
....|||++||+......|+++|..||.|-+|.|.....+ +.++. -+||+|.+...|+++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5689999999999999999999999999999999877654 22332 38899999999999999999999
Q ss_pred ccCceE
Q 011105 186 LKGKKI 191 (493)
Q Consensus 186 i~g~~i 191 (493)
|.|++-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 999763
No 138
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.64 E-value=4.9e-07 Score=82.07 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=67.3
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCC--cEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHG--KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 368 (493)
.++||+||-|++|+++|.+.+...| .|..++++.++.++.+||||+|...+..++++.++.|..++|.|..-.|.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 7999999999999999999988776 46788999999999999999999999999999999999999999754443
No 139
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.64 E-value=1.9e-07 Score=70.90 Aligned_cols=81 Identities=22% Similarity=0.351 Sum_probs=72.1
Q ss_pred ceEEEccCCCCCCHHHHHHHHhc--CCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceec----CeEEEE
Q 011105 294 KALYVKNLPKDITQDRLKELFAH--HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID----GQVLDC 367 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~--~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~----g~~i~v 367 (493)
++|.|+|||...|.++|.+++.. .|....+.++.|-.+..+.|||||.|.+++.|.+-...++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998864 367788999999999999999999999999999999999998886 467899
Q ss_pred EecCCCC
Q 011105 368 SLAKPQA 374 (493)
Q Consensus 368 ~~a~~~~ 374 (493)
.||+-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 9987653
No 140
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.59 E-value=9.8e-08 Score=92.25 Aligned_cols=77 Identities=25% Similarity=0.467 Sum_probs=66.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
..+|||+|||++++..+|+++|+.||.|....|......+++..||||+|.+.++++.||. .+...|.+++|.|+.-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEK 364 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEec
Confidence 4569999999999999999999999999999987765334555999999999999999998 5688889999988643
No 141
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.54 E-value=2.3e-07 Score=83.19 Aligned_cols=80 Identities=21% Similarity=0.375 Sum_probs=76.4
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
...+||+|+.+.+|.++|...|+.||.|..+.|+.++..+.++||+||+|.+.+.+..|+. |++..|.++.|.|.+..-
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~ 179 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRT 179 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeee
Confidence 4899999999999999999999999999999999999998899999999999999999999 999999999999999877
Q ss_pred C
Q 011105 373 Q 373 (493)
Q Consensus 373 ~ 373 (493)
+
T Consensus 180 ~ 180 (231)
T KOG4209|consen 180 N 180 (231)
T ss_pred e
Confidence 6
No 142
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.49 E-value=3.9e-07 Score=82.93 Aligned_cols=82 Identities=28% Similarity=0.350 Sum_probs=74.1
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEE--------EEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeE
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKIT--------KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV 364 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~ 364 (493)
...|||.|||.++|.+++.++|++||.|. .|.|.++.. +..+|-|.+.|--.+++.-|+..|++..|.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 36799999999999999999999999886 588888887 555999999999999999999999999999999
Q ss_pred EEEEecCCCCc
Q 011105 365 LDCSLAKPQAD 375 (493)
Q Consensus 365 i~v~~a~~~~~ 375 (493)
|+|..|+-+..
T Consensus 213 ~rVerAkfq~K 223 (382)
T KOG1548|consen 213 LRVERAKFQMK 223 (382)
T ss_pred EEEehhhhhhc
Confidence 99999986543
No 143
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.49 E-value=7e-08 Score=82.02 Aligned_cols=78 Identities=22% Similarity=0.373 Sum_probs=72.2
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
++|||.|+...++++.|.++|-+.|.|..|.|+.+++... + ||||.|.++-.+.-|+..|||..+.++.|.|.+-...
T Consensus 10 rtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~-k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 10 RTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQ-K-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGN 87 (267)
T ss_pred hHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCC-c-eeeeecccccchhhhhhhcccchhccchhhcccccCC
Confidence 8999999999999999999999999999999999988766 4 9999999999999999999999999999988876543
No 144
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.49 E-value=2.5e-08 Score=92.59 Aligned_cols=157 Identities=18% Similarity=0.328 Sum_probs=122.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCc-ccCceEEEecccc
Q 011105 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE-LKGKKIKCSAAQA 198 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~-i~g~~i~V~~~~~ 198 (493)
..||++||.+.++..+|..+|...-.-.+-.++. ..||+||.+.+...|.+|++.+++.. +.|+++.|..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 3689999999999999999997652211112222 34799999999999999999999874 7899988866543
Q ss_pred cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCeee
Q 011105 199 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 278 (493)
Q Consensus 199 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 278 (493)
+..
T Consensus 76 kkq----------------------------------------------------------------------------- 78 (584)
T KOG2193|consen 76 KKQ----------------------------------------------------------------------------- 78 (584)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 221
Q ss_pred ecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCc
Q 011105 279 WADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY 358 (493)
Q Consensus 279 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~ 358 (493)
.++.+-|+|+|...-|+.|..++..||.|..|..+....- .-..-|+|.+.+.+..||..|++.
T Consensus 79 -------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e---tavvnvty~~~~~~~~ai~kl~g~ 142 (584)
T KOG2193|consen 79 -------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE---TAVVNVTYSAQQQHRQAIHKLNGP 142 (584)
T ss_pred -------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH---HHHHHHHHHHHHHHHHHHHhhcch
Confidence 1266889999999999999999999999998876432211 123447899999999999999999
Q ss_pred eecCeEEEEEecCCCCc
Q 011105 359 EIDGQVLDCSLAKPQAD 375 (493)
Q Consensus 359 ~~~g~~i~v~~a~~~~~ 375 (493)
.|....++|.|-.....
T Consensus 143 Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 143 QLENQHLKVGYIPDEQN 159 (584)
T ss_pred HhhhhhhhcccCchhhh
Confidence 99999999998765433
No 145
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.43 E-value=2.3e-07 Score=80.86 Aligned_cols=82 Identities=23% Similarity=0.446 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+....+||.+.|..+++.+-|...|.+|-.....++++++.|++++||+||.|.+..++..|+..+++..+..+.|+...
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999998866
Q ss_pred cc
Q 011105 196 AQ 197 (493)
Q Consensus 196 ~~ 197 (493)
+.
T Consensus 267 S~ 268 (290)
T KOG0226|consen 267 SE 268 (290)
T ss_pred hh
Confidence 54
No 146
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.43 E-value=9.5e-07 Score=63.49 Aligned_cols=71 Identities=23% Similarity=0.442 Sum_probs=47.8
Q ss_pred CeEEEcCCCCCCCHHHHH----HHhhcc-CCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEe
Q 011105 120 SEVYLGGIPHDASDDDLR----HFCKSI-GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~----~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~ 194 (493)
+.|+|.|||.+.+...|+ .++..+ |.|..|. .+.|+|.|.+.+.|.+|.+.|++..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 479999999999988765 555566 4676652 3689999999999999999999999999999999
Q ss_pred cccccc
Q 011105 195 AAQAKH 200 (493)
Q Consensus 195 ~~~~~~ 200 (493)
+....+
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 875443
No 147
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.41 E-value=1.6e-06 Score=62.28 Aligned_cols=70 Identities=26% Similarity=0.398 Sum_probs=49.4
Q ss_pred ceEEEccCCCCCCHHH----HHHHHhcCC-cEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q 011105 294 KALYVKNLPKDITQDR----LKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~----l~~~f~~~G-~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 368 (493)
..|+|.|||...+... |++++..|| +|..|. .+.|+|.|.+.+.|.+|++.|+|..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5799999999888755 667777886 676663 3689999999999999999999999999999999
Q ss_pred ecCCC
Q 011105 369 LAKPQ 373 (493)
Q Consensus 369 ~a~~~ 373 (493)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 98544
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.41 E-value=3.9e-07 Score=81.72 Aligned_cols=81 Identities=25% Similarity=0.439 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....+.|||+|+.+.+|.++|..+|+.||.|..+.|.+++..+..++||||+|.+.+.+..+|. |++..|.++.|.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 4567899999999999999999999999999999999999999999999999999999999999 999999999999876
Q ss_pred cc
Q 011105 196 AQ 197 (493)
Q Consensus 196 ~~ 197 (493)
..
T Consensus 177 ~r 178 (231)
T KOG4209|consen 177 KR 178 (231)
T ss_pred ee
Confidence 54
No 149
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.41 E-value=3.5e-07 Score=79.72 Aligned_cols=73 Identities=23% Similarity=0.420 Sum_probs=67.2
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
..|||++||+.+.+.+|..||..||.|..|.+. .||+||+|.+..+|..|+..||+..|.+-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 479999999999999999999999999999884 479999999999999999999999999988999998765
Q ss_pred C
Q 011105 374 A 374 (493)
Q Consensus 374 ~ 374 (493)
.
T Consensus 74 ~ 74 (216)
T KOG0106|consen 74 R 74 (216)
T ss_pred c
Confidence 3
No 150
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=1.7e-07 Score=90.78 Aligned_cols=69 Identities=32% Similarity=0.493 Sum_probs=64.8
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEE
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 366 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 366 (493)
..+|+|-|||..++.++|+.+|+.||.|..|+.-+.+ +|.+||+|.+..+|++|+++|++..|.|+.|.
T Consensus 75 ~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 75 QGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-----RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4899999999999999999999999999998776665 78999999999999999999999999999988
No 151
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.33 E-value=3.8e-06 Score=86.07 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 011105 472 SSSSGGRRSTDNGRGRSRYN 491 (493)
Q Consensus 472 g~g~gg~~~~~gg~g~~~~~ 491 (493)
|+++||+|+.++|+++++|.
T Consensus 1261 grgagggGgfg~G~~Gg~~~ 1280 (1282)
T KOG0921|consen 1261 GRGAGGGGGFGGGGRGGNAS 1280 (1282)
T ss_pred CCCCCCCCCCCCCCcccccc
Confidence 33333444444455555554
No 152
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.27 E-value=1.6e-06 Score=86.13 Aligned_cols=84 Identities=25% Similarity=0.344 Sum_probs=74.5
Q ss_pred ccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCC---CCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEE
Q 011105 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK---PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 366 (493)
Q Consensus 290 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~---~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 366 (493)
...+++|||+||+..++++.|...|..||.|..|+|+..+ ...+.+.++||-|-+..+|.+|++.|+|..+....++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4456899999999999999999999999999999998754 2344467999999999999999999999999999999
Q ss_pred EEecCCC
Q 011105 367 CSLAKPQ 373 (493)
Q Consensus 367 v~~a~~~ 373 (493)
+-|+++-
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9999654
No 153
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.20 E-value=1.9e-05 Score=81.19 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=5.2
Q ss_pred CCCCCCCCCCCCC
Q 011105 464 RSGRGGAGSSSSG 476 (493)
Q Consensus 464 ~gg~gg~gg~g~g 476 (493)
+|||.|.||.+++
T Consensus 1247 gggyrgsGGfgrg 1259 (1282)
T KOG0921|consen 1247 GGGYRGSGGFGRG 1259 (1282)
T ss_pred CCCccCCCCcCCC
Confidence 3344444443333
No 154
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.17 E-value=1.8e-06 Score=79.57 Aligned_cols=83 Identities=25% Similarity=0.443 Sum_probs=75.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCee--------EEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVT--------EVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGK 189 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~--------~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~ 189 (493)
...+|||.+||..+++.+|.++|.++|.|. .|+|.++++|++.++-|.|.|.+...|+.||..+++..+.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 456899999999999999999999999875 478899999999999999999999999999999999999999
Q ss_pred eEEEecccccc
Q 011105 190 KIKCSAAQAKH 200 (493)
Q Consensus 190 ~i~V~~~~~~~ 200 (493)
+|+|.++....
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99998876544
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.08 E-value=9.5e-06 Score=63.40 Aligned_cols=70 Identities=29% Similarity=0.526 Sum_probs=44.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCC-----cccCceEEE
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSC-----ELKGKKIKC 193 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~-----~i~g~~i~V 193 (493)
++.|+|.+++..++.++|+++|+.||.|..|.+.... ..|||.|.+.+.|++|++.+... .|.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 3679999999999999999999999999999987654 38999999999999999876544 345555544
Q ss_pred e
Q 011105 194 S 194 (493)
Q Consensus 194 ~ 194 (493)
.
T Consensus 75 ~ 75 (105)
T PF08777_consen 75 E 75 (105)
T ss_dssp E
T ss_pred E
Confidence 3
No 156
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.07 E-value=6.6e-06 Score=81.85 Aligned_cols=82 Identities=20% Similarity=0.358 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC---CCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK---DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK 192 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~---~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~ 192 (493)
.+..+.|||+||++.++++.|...|..||+|.+|+|+--+ ...+.+-|+||.|-+..+|.+|++.|++..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4567899999999999999999999999999999997543 2346677999999999999999999999999999998
Q ss_pred Eeccc
Q 011105 193 CSAAQ 197 (493)
Q Consensus 193 V~~~~ 197 (493)
+-|.+
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 88873
No 157
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.04 E-value=0.0002 Score=67.55 Aligned_cols=94 Identities=18% Similarity=0.287 Sum_probs=72.8
Q ss_pred CCCCcccCCCCCeeeecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCC---CCCC---Cc---
Q 011105 264 SNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA---KPGQ---ER--- 334 (493)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~---~~~~---~~--- 334 (493)
....+.+..-.-.|.+..|-........++++|.+.|||.+-.-+.|.++|+.||.|..|+|+.. .... ..
T Consensus 202 ~S~kL~vseDgkKVrRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~ 281 (484)
T KOG1855|consen 202 KSSKLEVSEDGKKVRRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYF 281 (484)
T ss_pred hcceEEEccCCceeeecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccch
Confidence 34445555555666666666655566667899999999999888999999999999999999987 2211 11
Q ss_pred ----ccEEEEEeCCHHHHHHHHHhcCC
Q 011105 335 ----SRYGFVHFAERSSAMKALKNTEK 357 (493)
Q Consensus 335 ----~g~~fV~f~~~~~a~~a~~~l~~ 357 (493)
+-+|+|+|...+.|.+|.+.|+.
T Consensus 282 ~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 282 ELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 34899999999999999998754
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.04 E-value=9.1e-06 Score=63.49 Aligned_cols=71 Identities=23% Similarity=0.388 Sum_probs=45.3
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCC-----ceecCeEEEEE
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK-----YEIDGQVLDCS 368 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~-----~~~~g~~i~v~ 368 (493)
..|+|.++...++.++|+++|+.||.|..|.+.+.. ..|||.|.+.+.|..|+..+.- ..|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 579999999999999999999999999999997754 3899999999999999988643 35566666555
Q ss_pred ec
Q 011105 369 LA 370 (493)
Q Consensus 369 ~a 370 (493)
+-
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 43
No 159
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.89 E-value=0.00063 Score=62.36 Aligned_cols=76 Identities=21% Similarity=0.423 Sum_probs=67.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEe
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIG--EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~ 194 (493)
...+||+||-|.+|.+||.+.+...| .+.+++++.++..|.++|||+|...+..+.++.++.|....|+|..-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 34799999999999999999988776 57788899998889999999999999999999999999999998866553
No 160
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.82 E-value=4.6e-05 Score=69.29 Aligned_cols=88 Identities=25% Similarity=0.459 Sum_probs=66.7
Q ss_pred CeEEEcCCCCCCCHHHH------HHHhhccCCeeEEEEeeCCCCC-CcceEE--EEEeccHHHHHHHHHHhCCCcccCce
Q 011105 120 SEVYLGGIPHDASDDDL------RHFCKSIGEVTEVRIMKGKDSG-EAKGYA--FVTFRTKELASQAIEELNSCELKGKK 190 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l------~~~f~~~G~v~~v~i~~~~~~g-~~~g~a--fV~F~~~e~A~~Al~~l~~~~i~g~~ 190 (493)
..|||-+||+.+..+++ .++|.+||.|..|.|.+.-.+. ...+.+ ||+|.+.++|.+||...++..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 35899999998877773 3899999999988776543211 122233 99999999999999999999999999
Q ss_pred EEEecccccc-cccccCC
Q 011105 191 IKCSAAQAKH-RLFIGNV 207 (493)
Q Consensus 191 i~V~~~~~~~-~l~v~~l 207 (493)
|+..+...+. +.|++|+
T Consensus 195 lkatYGTTKYCtsYLRn~ 212 (480)
T COG5175 195 LKATYGTTKYCTSYLRNA 212 (480)
T ss_pred EeeecCchHHHHHHHcCC
Confidence 9998876542 3344443
No 161
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00016 Score=70.41 Aligned_cols=76 Identities=25% Similarity=0.344 Sum_probs=64.3
Q ss_pred ceEEEccCCCCCCH------HHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceec-CeEEE
Q 011105 294 KALYVKNLPKDITQ------DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID-GQVLD 366 (493)
Q Consensus 294 ~~l~v~nl~~~~t~------~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~-g~~i~ 366 (493)
.+|+|.|+|---.. .-|..+|+++|+|+.+.++.+..++ ++||.|++|.+..+|..|++.|||+.|+ .++..
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 78999999854322 3467899999999999999999888 4999999999999999999999999986 56676
Q ss_pred EEec
Q 011105 367 CSLA 370 (493)
Q Consensus 367 v~~a 370 (493)
|..-
T Consensus 138 v~~f 141 (698)
T KOG2314|consen 138 VRLF 141 (698)
T ss_pred eehh
Confidence 6643
No 162
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.67 E-value=5e-05 Score=74.31 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=64.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh-ccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcc---cCceEE
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCK-SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL---KGKKIK 192 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i---~g~~i~ 192 (493)
..+..|+|.||-.-.|.-+|+.++. ..|.|...+| | +-+..|||.|.+.++|...+.+||+..| +.+.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 3456899999999999999999998 6677777633 3 2466899999999999999999999988 568888
Q ss_pred Eecccccc
Q 011105 193 CSAAQAKH 200 (493)
Q Consensus 193 V~~~~~~~ 200 (493)
|.|.....
T Consensus 516 adf~~~de 523 (718)
T KOG2416|consen 516 ADFVRADE 523 (718)
T ss_pred eeecchhH
Confidence 88876543
No 163
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.66 E-value=0.00022 Score=64.99 Aligned_cols=80 Identities=20% Similarity=0.476 Sum_probs=64.1
Q ss_pred ceEEEccCCCCCCHHH----H--HHHHhcCCcEEEEEeCCCCCCCC-cccE--EEEEeCCHHHHHHHHHhcCCceecCeE
Q 011105 294 KALYVKNLPKDITQDR----L--KELFAHHGKITKVVIPPAKPGQE-RSRY--GFVHFAERSSAMKALKNTEKYEIDGQV 364 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~----l--~~~f~~~G~v~~v~i~~~~~~~~-~~g~--~fV~f~~~~~a~~a~~~l~~~~~~g~~ 364 (493)
+-+||-+|+..+..++ | .++|.+||+|..|.|-+...... -.+. .||+|.+.++|.+||...+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 6789999988876665 2 47999999999998876542111 1122 399999999999999999999999999
Q ss_pred EEEEecCCC
Q 011105 365 LDCSLAKPQ 373 (493)
Q Consensus 365 i~v~~a~~~ 373 (493)
|+..|...+
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 999988753
No 164
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.61 E-value=3.6e-05 Score=71.65 Aligned_cols=79 Identities=24% Similarity=0.554 Sum_probs=72.0
Q ss_pred CeEE-EcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecccc
Q 011105 120 SEVY-LGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (493)
Q Consensus 120 ~~l~-V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~ 198 (493)
.++| |.+|++++++++|+.+|..+|.|+.+++..+..++.+++||||.|.....+..++.. ....+.++++.+....+
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCC
Confidence 3455 999999999999999999999999999999999999999999999999999999986 78889999999987664
Q ss_pred c
Q 011105 199 K 199 (493)
Q Consensus 199 ~ 199 (493)
.
T Consensus 264 ~ 264 (285)
T KOG4210|consen 264 R 264 (285)
T ss_pred C
Confidence 3
No 165
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=97.61 E-value=0.0005 Score=63.00 Aligned_cols=13 Identities=38% Similarity=0.764 Sum_probs=7.3
Q ss_pred CCCCCCCCCCCCC
Q 011105 479 RSTDNGRGRSRYN 491 (493)
Q Consensus 479 ~~~~gg~g~~~~~ 491 (493)
+|.+||.|||.||
T Consensus 449 rgrgggggrg~y~ 461 (465)
T KOG3973|consen 449 RGRGGGGGRGGYR 461 (465)
T ss_pred CCCCCCCCCcccC
Confidence 3444455666676
No 166
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.55 E-value=0.00019 Score=48.21 Aligned_cols=52 Identities=15% Similarity=0.490 Sum_probs=42.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHH
Q 011105 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al 178 (493)
+.|-|.+.+.+..+. |..+|..||+|..+.+-. ...+.||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 578899999887754 455888999999988752 3459999999999999985
No 167
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=97.46 E-value=0.0014 Score=60.10 Aligned_cols=17 Identities=24% Similarity=0.138 Sum_probs=7.9
Q ss_pred cccccCCCCCCCHHHHH
Q 011105 201 RLFIGNVPRNWGEDDMR 217 (493)
Q Consensus 201 ~l~v~~l~~~~~~~~l~ 217 (493)
.|-+...|.++++-.|.
T Consensus 151 ~L~~~k~p~Nin~~~lf 167 (465)
T KOG3973|consen 151 TLNFPKQPGNINEWKLF 167 (465)
T ss_pred HcCCCCCCCCchHHHHH
Confidence 34444445555554443
No 168
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.44 E-value=0.00071 Score=59.69 Aligned_cols=88 Identities=18% Similarity=0.258 Sum_probs=75.7
Q ss_pred HHHHHHHhCCCcccCceEEEecccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCH
Q 011105 174 ASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNH 253 (493)
Q Consensus 174 A~~Al~~l~~~~i~g~~i~V~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~ 253 (493)
|..|...|++....++.++|.++.. ..|+|.||...+..+.|...|+.||+ |....++.| ..++..+-++|.|...
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg~-~e~av~~vD--~r~k~t~eg~v~~~~k 82 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFGP-IERAVAKVD--DRGKPTREGIVEFAKK 82 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcCc-cchheeeec--ccccccccchhhhhcc
Confidence 4455556899999999999999998 99999999999999999999999998 776666654 4577788899999999
Q ss_pred HHHHHHHHHcCC
Q 011105 254 ACAEYSRQKMSN 265 (493)
Q Consensus 254 ~~a~~a~~~~~~ 265 (493)
..+..|+....-
T Consensus 83 ~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 83 PNARKAARRCRE 94 (275)
T ss_pred hhHHHHHHHhcc
Confidence 999999887753
No 169
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.43 E-value=0.00047 Score=46.36 Aligned_cols=52 Identities=27% Similarity=0.563 Sum_probs=42.4
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHH
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~ 352 (493)
+.|.|.+.+.... +.|..+|..||.|..+.+... ..+.||+|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 5788888886655 456669999999999999732 358999999999999985
No 170
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.00046 Score=67.39 Aligned_cols=80 Identities=24% Similarity=0.338 Sum_probs=64.8
Q ss_pred CCCCeEEEcCCCCC--CCHHH----HHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcc-cCc
Q 011105 117 PHGSEVYLGGIPHD--ASDDD----LRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL-KGK 189 (493)
Q Consensus 117 ~~~~~l~V~nLp~~--~te~~----l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i-~g~ 189 (493)
--.+.|+|-|+|-= ..-+. |.++|+++|+|+.+.+..+.. |.++||.|++|.+..+|+.|++.|||..| ..+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 45678999999942 22222 568899999999999888877 55999999999999999999999999987 566
Q ss_pred eEEEeccc
Q 011105 190 KIKCSAAQ 197 (493)
Q Consensus 190 ~i~V~~~~ 197 (493)
++.|...+
T Consensus 135 tf~v~~f~ 142 (698)
T KOG2314|consen 135 TFFVRLFK 142 (698)
T ss_pred eEEeehhh
Confidence 77776543
No 171
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.32 E-value=0.0018 Score=49.71 Aligned_cols=77 Identities=16% Similarity=0.274 Sum_probs=52.5
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEE-eCCCC------CCCCcccEEEEEeCCHHHHHHHHHhcCCceecCe-EE
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVV-IPPAK------PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ-VL 365 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~-i~~~~------~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~-~i 365 (493)
+.|.|-+.|.. ....|.+.|++||.|.+.. +.++. .......+..|+|++..+|.+||.. ||..|.|. .+
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEE
Confidence 67889999887 5567889999999998775 11110 0111246999999999999999995 99999985 45
Q ss_pred EEEecCC
Q 011105 366 DCSLAKP 372 (493)
Q Consensus 366 ~v~~a~~ 372 (493)
-|.++++
T Consensus 85 GV~~~~~ 91 (100)
T PF05172_consen 85 GVKPCDP 91 (100)
T ss_dssp EEEE-HH
T ss_pred EEEEcHH
Confidence 5777643
No 172
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.26 E-value=0.00017 Score=63.44 Aligned_cols=71 Identities=21% Similarity=0.436 Sum_probs=61.4
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCC--------CCccc----EEEEEeCCHHHHHHHHHhcCCceec
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG--------QERSR----YGFVHFAERSSAMKALKNTEKYEID 361 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--------~~~~g----~~fV~f~~~~~a~~a~~~l~~~~~~ 361 (493)
-.||+.+||+.+....|+++|+.||.|-.|.+-..... +.++. -+.|+|.+...|..+...||+..|.
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 68999999999999999999999999999999887654 12122 4679999999999999999999999
Q ss_pred CeE
Q 011105 362 GQV 364 (493)
Q Consensus 362 g~~ 364 (493)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 863
No 173
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.26 E-value=0.00078 Score=60.36 Aligned_cols=78 Identities=26% Similarity=0.359 Sum_probs=58.5
Q ss_pred ceEEEccC--CCCCC---HHHHHHHHhcCCcEEEEEeCCCCCCCCcc-cEEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q 011105 294 KALYVKNL--PKDIT---QDRLKELFAHHGKITKVVIPPAKPGQERS-RYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (493)
Q Consensus 294 ~~l~v~nl--~~~~t---~~~l~~~f~~~G~v~~v~i~~~~~~~~~~-g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 367 (493)
+.|.++|+ +-.++ ++++++.|++||+|..|.|+....-.... --.||+|...+.|.+|+-.|||+.|+||.+..
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 34555554 22233 46688999999999999888765322111 24799999999999999999999999999988
Q ss_pred EecC
Q 011105 368 SLAK 371 (493)
Q Consensus 368 ~~a~ 371 (493)
.|-.
T Consensus 362 ~Fyn 365 (378)
T KOG1996|consen 362 CFYN 365 (378)
T ss_pred eecc
Confidence 7754
No 174
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.25 E-value=0.00014 Score=64.27 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=54.0
Q ss_pred HHHHHHHh-cCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCCC
Q 011105 308 DRLKELFA-HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 374 (493)
Q Consensus 308 ~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~ 374 (493)
++|...|+ +||.|+.+.|..+-.... +|-+||.|...++|.+|+..||+.+|.|++|...++.--.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl-~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHL-VGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhh-hhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 44445555 899999997776554333 7899999999999999999999999999999999886543
No 175
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.21 E-value=0.0017 Score=52.95 Aligned_cols=57 Identities=28% Similarity=0.444 Sum_probs=46.7
Q ss_pred HHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 308 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 308 ~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
..|.+.|..||.|.-|+++.+ .-+|+|.+-+.|.+|+. |+|..++|+.|+|++..|.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 367788899999999998764 57899999999999998 7999999999999998875
No 176
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.15 E-value=0.00037 Score=65.81 Aligned_cols=70 Identities=26% Similarity=0.357 Sum_probs=57.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeC---CCC--CC--------cceEEEEEeccHHHHHHHHHHhCC
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG---KDS--GE--------AKGYAFVTFRTKELASQAIEELNS 183 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~---~~~--g~--------~~g~afV~F~~~e~A~~Al~~l~~ 183 (493)
..+++|.+.|||.+-..+.|.++|..+|.|..|+|+.- ... +. .+-+|+|+|...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 36789999999999999999999999999999999876 221 21 244799999999999999997755
Q ss_pred Ccc
Q 011105 184 CEL 186 (493)
Q Consensus 184 ~~i 186 (493)
...
T Consensus 309 e~~ 311 (484)
T KOG1855|consen 309 EQN 311 (484)
T ss_pred hhh
Confidence 433
No 177
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.12 E-value=0.0018 Score=52.84 Aligned_cols=74 Identities=26% Similarity=0.350 Sum_probs=53.4
Q ss_pred CCCCCeEEEcCCCCC-----CCHH----HHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcc
Q 011105 116 PPHGSEVYLGGIPHD-----ASDD----DLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~-----~te~----~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i 186 (493)
-+...||.|.=+.+. .-.+ +|.+.|..||.|+-|+++.+ .-+|+|.+-+.|.+|+. +++..|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE
Confidence 345667777766522 2222 56778899999999988765 57999999999999998 999999
Q ss_pred cCceEEEecccc
Q 011105 187 KGKKIKCSAAQA 198 (493)
Q Consensus 187 ~g~~i~V~~~~~ 198 (493)
.|+.|+|....+
T Consensus 95 ~g~~l~i~LKtp 106 (146)
T PF08952_consen 95 NGRTLKIRLKTP 106 (146)
T ss_dssp TTEEEEEEE---
T ss_pred CCEEEEEEeCCc
Confidence 999999987654
No 178
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.06 E-value=0.0023 Score=49.13 Aligned_cols=77 Identities=14% Similarity=0.189 Sum_probs=52.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-------CCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceE
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK-------DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~-------~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i 191 (493)
.+.|.|-+.|.. ....|.++|++||.|++..-+... ..-....+..|+|.++.+|.+||. .||..|.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 467889999998 556788899999999887511000 001234589999999999999998 89999988654
Q ss_pred -EEeccc
Q 011105 192 -KCSAAQ 197 (493)
Q Consensus 192 -~V~~~~ 197 (493)
-|.++.
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 465553
No 179
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.99 E-value=0.00028 Score=62.36 Aligned_cols=63 Identities=25% Similarity=0.409 Sum_probs=51.0
Q ss_pred HHHHHHhh-ccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 134 DDLRHFCK-SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 134 ~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
++|...|. +||+|..++|..+.. -.-.|-+||.|...++|.+|++.||+..+.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444444 899999997766543 4567899999999999999999999999999999886553
No 180
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.95 E-value=0.0013 Score=61.48 Aligned_cols=77 Identities=22% Similarity=0.267 Sum_probs=63.1
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCC---CCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG---QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
..|.|.||...+|.++++.+|...|+|..+.|+.+... ....-.|||.|.+...+..|.. |.+++|-++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 58999999999999999999999999999999875432 1123489999999999988887 6777787887776654
Q ss_pred C
Q 011105 371 K 371 (493)
Q Consensus 371 ~ 371 (493)
.
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 4
No 181
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.89 E-value=0.00096 Score=65.66 Aligned_cols=81 Identities=15% Similarity=0.217 Sum_probs=65.9
Q ss_pred cccccceEEEccCCCCCCHHHHHHHHh-cCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcee---cCeE
Q 011105 289 AASQVKALYVKNLPKDITQDRLKELFA-HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI---DGQV 364 (493)
Q Consensus 289 ~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~---~g~~ 364 (493)
....++.|+|.||-.-+|.-+|+.++. .+|.|+...|-+- +-.|||.|.+.++|.+.+.+|||..+ +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 344469999999999999999999999 5666776633222 46899999999999999999999887 5688
Q ss_pred EEEEecCCCCc
Q 011105 365 LDCSLAKPQAD 375 (493)
Q Consensus 365 i~v~~a~~~~~ 375 (493)
|.+.|+..-..
T Consensus 514 L~adf~~~del 524 (718)
T KOG2416|consen 514 LIADFVRADEL 524 (718)
T ss_pred eEeeecchhHH
Confidence 99999876543
No 182
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.85 E-value=0.0044 Score=60.40 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=59.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh-ccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHH
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCK-SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~ 180 (493)
...+||||++||.-+|-++|..+|. -||-|..+-|-.|++-+..+|-|-|+|.+..+-.+||.+
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4678999999999999999999998 899999999999987789999999999999999999974
No 183
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.59 E-value=0.0058 Score=54.13 Aligned_cols=89 Identities=27% Similarity=0.400 Sum_probs=70.2
Q ss_pred HHHHHHHHHcCCCCcccCCCCCeeeecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCC
Q 011105 254 ACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333 (493)
Q Consensus 254 ~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~ 333 (493)
.-|..|...|.+. ...++.+.+-|+.. ..|+|.||...++.+.|...|+.||.|....++.|.....
T Consensus 5 t~ae~ak~eLd~~--~~~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~ 71 (275)
T KOG0115|consen 5 TLAEIAKRELDGR--FPKGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKP 71 (275)
T ss_pred cHHHHHHHhcCCC--CCCCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccc
Confidence 3456666666653 34566677776654 5799999999999999999999999999877776665444
Q ss_pred cccEEEEEeCCHHHHHHHHHhcC
Q 011105 334 RSRYGFVHFAERSSAMKALKNTE 356 (493)
Q Consensus 334 ~~g~~fV~f~~~~~a~~a~~~l~ 356 (493)
.+-++|.|...-.|.+|+..++
T Consensus 72 -t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 72 -TREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred -cccchhhhhcchhHHHHHHHhc
Confidence 6789999999999999999874
No 184
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.46 E-value=0.016 Score=39.98 Aligned_cols=54 Identities=17% Similarity=0.245 Sum_probs=45.3
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcC---CcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 011105 294 KALYVKNLPKDITQDRLKELFAHH---GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l 355 (493)
..|+|+++. .++.++|+.+|..| .....|..+.|. -|=|.|.+...|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 789999995 68889999999988 235578888775 5789999999999999864
No 185
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.42 E-value=0.021 Score=58.49 Aligned_cols=12 Identities=0% Similarity=0.077 Sum_probs=6.1
Q ss_pred cHHHHHHHHHHh
Q 011105 170 TKELASQAIEEL 181 (493)
Q Consensus 170 ~~e~A~~Al~~l 181 (493)
....+.+||+++
T Consensus 208 ~~~eiIrClka~ 219 (1102)
T KOG1924|consen 208 NLQEIIRCLKAF 219 (1102)
T ss_pred HHHHHHHHHHHH
Confidence 344555555543
No 186
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=96.39 E-value=0.017 Score=60.76 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=24.3
Q ss_pred CcceEEEEEeccHHHHHHHHHHhCCCccc
Q 011105 159 EAKGYAFVTFRTKELASQAIEELNSCELK 187 (493)
Q Consensus 159 ~~~g~afV~F~~~e~A~~Al~~l~~~~i~ 187 (493)
.-+||-||+=.....++.||+-+-+..+.
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheec
Confidence 36899999999999999999977665555
No 187
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.38 E-value=0.024 Score=58.04 Aligned_cols=12 Identities=42% Similarity=0.792 Sum_probs=5.2
Q ss_pred CCCCCCCCCCCC
Q 011105 453 GVQQHNPPPQPR 464 (493)
Q Consensus 453 g~~~~~~~p~~~ 464 (493)
|+++++|||.|+
T Consensus 578 g~~gppPPPpp~ 589 (1102)
T KOG1924|consen 578 GGGGPPPPPPPG 589 (1102)
T ss_pred CCCCCCCcCCCC
Confidence 444444444443
No 188
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.26 E-value=0.024 Score=39.03 Aligned_cols=54 Identities=20% Similarity=0.366 Sum_probs=44.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcc---CCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHh
Q 011105 120 SEVYLGGIPHDASDDDLRHFCKSI---GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~~~f~~~---G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l 181 (493)
..|+|+++ .+++.++|+.+|..| .....|..+-|. .|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 46999998 458889999999998 235578888774 6889999999999999754
No 189
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.25 E-value=0.012 Score=52.93 Aligned_cols=64 Identities=25% Similarity=0.349 Sum_probs=50.9
Q ss_pred HHHHHHHhhccCCeeEEEEeeCCCCCCc-ceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 133 DDDLRHFCKSIGEVTEVRIMKGKDSGEA-KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 133 e~~l~~~f~~~G~v~~v~i~~~~~~g~~-~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
++++++-+.+||.|..|.|.....--.. .---||+|...+.|.+|+-.|||.+|.||.+...+.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 3457788999999999999877532111 224799999999999999999999999999876543
No 190
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.054 Score=53.74 Aligned_cols=130 Identities=14% Similarity=0.143 Sum_probs=77.0
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhcc----CCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCce
Q 011105 116 PPHGSEVYLGGIPHD-ASDDDLRHFCKSI----GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKK 190 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~-~te~~l~~~f~~~----G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~ 190 (493)
...+.+|-|.||.|+ +.-.+|.-+|+.| |.|.+|.|+...- + .+.|....+.|-+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeF-------G-------------keRM~eEeV~GP~ 230 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEF-------G-------------KERMKEEEVHGPP 230 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhh-------h-------------HHHhhhhcccCCh
Confidence 456789999999995 6888999998877 6899999987531 1 2223334455543
Q ss_pred EEEecccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCccc
Q 011105 191 IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 270 (493)
Q Consensus 191 i~V~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~ 270 (493)
+.+........- ........+...+..+..++ +..+ ..-||.|+|.+...|......+.+..+..
T Consensus 231 ~el~~~~e~~~~--s~sD~ee~~~~~~~kLR~Yq--~~rL-----------kYYyAVvecDsi~tA~~vYe~CDG~EfEs 295 (650)
T KOG2318|consen 231 KELFKPVEEYKE--SESDDEEEEDVDREKLRQYQ--LNRL-----------KYYYAVVECDSIETAKAVYEECDGIEFES 295 (650)
T ss_pred hhhccccccCcc--cccchhhhhhHHHHHHHHHH--hhhh-----------eeEEEEEEecCchHHHHHHHhcCcceecc
Confidence 332211100000 00011111122344455554 2221 22378999999999999999999877766
Q ss_pred CCCCCeeeec
Q 011105 271 DDNAPTVSWA 280 (493)
Q Consensus 271 ~~~~~~~~~~ 280 (493)
....+.+.|.
T Consensus 296 S~~~~DLRFI 305 (650)
T KOG2318|consen 296 SANKLDLRFI 305 (650)
T ss_pred ccceeeeeec
Confidence 6665555544
No 191
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.08 E-value=0.03 Score=40.72 Aligned_cols=55 Identities=22% Similarity=0.358 Sum_probs=41.8
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~ 357 (493)
...+|. .|..+-..+|.++|+.||.|. |..+.+ .-|||...+.+.|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 566666 999999999999999999874 555554 3799999999999999988753
No 192
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.02 E-value=0.034 Score=40.44 Aligned_cols=59 Identities=19% Similarity=0.379 Sum_probs=43.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCC
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS 183 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~ 183 (493)
|......+|. .|......||.++|+.||.|. |..+.+ ..|||...+.+.|..|+..+..
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 3344556666 999999999999999999987 444444 3899999999999999987653
No 193
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.78 E-value=0.01 Score=51.33 Aligned_cols=72 Identities=13% Similarity=0.223 Sum_probs=46.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhc-cCCe---eEEEEeeCCCC--CCcceEEEEEeccHHHHHHHHHHhCCCcccCc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKS-IGEV---TEVRIMKGKDS--GEAKGYAFVTFRTKELASQAIEELNSCELKGK 189 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~-~G~v---~~v~i~~~~~~--g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~ 189 (493)
....|.||+||+++|++++.+.+.. ++.. ..+.-...... -....-|||.|.+.+++......+++..|.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 4568999999999999999987776 5555 33332122111 12334699999999999999999999877543
No 194
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.64 E-value=0.03 Score=48.37 Aligned_cols=80 Identities=9% Similarity=0.057 Sum_probs=51.5
Q ss_pred ceEEEccCCCCCCHHHHHHHHhc-CCcE---EEEE--eCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecC-----
Q 011105 294 KALYVKNLPKDITQDRLKELFAH-HGKI---TKVV--IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG----- 362 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~-~G~v---~~v~--i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g----- 362 (493)
.+|.|++||+.+|++++++.+.. ++.. ..+. ..........-.-|||.|.+.+++..-+..++|+.|-+
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~ 87 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNE 87 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-E
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCC
Confidence 78999999999999999996665 4444 2333 22211111122369999999999999999999988754
Q ss_pred eEEEEEecCCC
Q 011105 363 QVLDCSLAKPQ 373 (493)
Q Consensus 363 ~~i~v~~a~~~ 373 (493)
.+..|.+|.-+
T Consensus 88 ~~~~VE~Apyq 98 (176)
T PF03467_consen 88 YPAVVEFAPYQ 98 (176)
T ss_dssp EEEEEEE-SS-
T ss_pred cceeEEEcchh
Confidence 35677777654
No 195
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.49 E-value=0.024 Score=55.73 Aligned_cols=68 Identities=15% Similarity=0.261 Sum_probs=55.8
Q ss_pred ceEEEccCCCCCCHHHHHHHHh--cCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcC--CceecCeEEEEE
Q 011105 294 KALYVKNLPKDITQDRLKELFA--HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDCS 368 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~--~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~ 368 (493)
+.|.|+-||..+..++|+.+|. .|-++.+|.+-.+. -.||+|++..||+.|.+.|. -.+|.|++|...
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 7788899999999999999997 57788999887664 47999999999999998875 355777665443
No 196
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.28 E-value=1.1 Score=43.59 Aligned_cols=14 Identities=0% Similarity=0.152 Sum_probs=8.1
Q ss_pred ceEEEeeCCHHHHH
Q 011105 244 GFAFIEYYNHACAE 257 (493)
Q Consensus 244 g~~fv~f~~~~~a~ 257 (493)
.|-.|.|.+...+.
T Consensus 260 P~YvvRFnS~~e~~ 273 (483)
T KOG2236|consen 260 PYYVVRFNSEEEIS 273 (483)
T ss_pred ceEEEecCchhhhh
Confidence 45556776665543
No 197
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.15 E-value=0.077 Score=42.77 Aligned_cols=72 Identities=21% Similarity=0.335 Sum_probs=54.7
Q ss_pred cceEEEccCCCCCC----HHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q 011105 293 VKALYVKNLPKDIT----QDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (493)
Q Consensus 293 ~~~l~v~nl~~~~t----~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 368 (493)
..+|.|+=|..++. ...+...++.||.|.+|.+.- +..|.|.|.+..+|-+|+.+++. ...|..+.++
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 36788866655543 334555668999999998853 45899999999999999999876 5678888888
Q ss_pred ecCC
Q 011105 369 LAKP 372 (493)
Q Consensus 369 ~a~~ 372 (493)
|-.+
T Consensus 158 Wqqr 161 (166)
T PF15023_consen 158 WQQR 161 (166)
T ss_pred cccc
Confidence 8543
No 198
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.99 E-value=0.021 Score=54.16 Aligned_cols=78 Identities=22% Similarity=0.347 Sum_probs=60.6
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-eecCeEEEEEecCC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY-EIDGQVLDCSLAKP 372 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~-~~~g~~i~v~~a~~ 372 (493)
+.|||+||...++..+|..+|...-.-.+-.++. ..||+||.+.+..-|.+|++.+++. .+.|+++.|..+-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 5799999999999999999998651111111111 2489999999999999999999875 47899999999887
Q ss_pred CCccC
Q 011105 373 QADQK 377 (493)
Q Consensus 373 ~~~~~ 377 (493)
+..+.
T Consensus 76 kkqrs 80 (584)
T KOG2193|consen 76 KKQRS 80 (584)
T ss_pred HHHHh
Confidence 75543
No 199
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.90 E-value=0.043 Score=54.08 Aligned_cols=71 Identities=21% Similarity=0.263 Sum_probs=58.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc--cCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCC--CcccCceEE
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKS--IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS--CELKGKKIK 192 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~--~~i~g~~i~ 192 (493)
.+.|.|.|+-||.++..++|+.||+. +-++++|.+..+. -=||+|.+..+|+.|.+.|.. +.|.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 45678899999999999999999964 7789999986654 259999999999999997754 457788775
Q ss_pred Ee
Q 011105 193 CS 194 (493)
Q Consensus 193 V~ 194 (493)
.+
T Consensus 246 AR 247 (684)
T KOG2591|consen 246 AR 247 (684)
T ss_pred hh
Confidence 54
No 200
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.89 E-value=0.038 Score=57.65 Aligned_cols=75 Identities=16% Similarity=0.340 Sum_probs=66.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccC--ceEEEe
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG--KKIKCS 194 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g--~~i~V~ 194 (493)
...+.|||++|...+....|...|..||.|..|.+-.. ..||||.|.+...|+.|...+-+..|.+ +.|+|.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 45678999999999999999999999999998877443 4599999999999999999999999865 778888
Q ss_pred ccc
Q 011105 195 AAQ 197 (493)
Q Consensus 195 ~~~ 197 (493)
++.
T Consensus 527 la~ 529 (975)
T KOG0112|consen 527 LAS 529 (975)
T ss_pred ccc
Confidence 875
No 201
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.84 E-value=0.23 Score=39.04 Aligned_cols=68 Identities=21% Similarity=0.304 Sum_probs=50.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcc-CCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccC
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSI-GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG 188 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g 188 (493)
...+.|-..|..++-++|..+...+ ..|..++|+++. ..++=.+.|+|.+.+.|......+||+.+.-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3445555555666666776666655 357788888875 3477789999999999999999999988743
No 202
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.65 E-value=0.022 Score=55.03 Aligned_cols=77 Identities=22% Similarity=0.213 Sum_probs=63.4
Q ss_pred CCCCeEEEcCCCCCC-CHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 117 PHGSEVYLGGIPHDA-SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~-te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
.+.+.|-|.-+|+.+ |..+|..+|.+||.|..|.+-.. .-.|.|+|.+..+|-.|.. .++..|++|.|+|.|
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFW 442 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEE
Confidence 345667777777765 66789999999999999988443 3479999999999988886 899999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
..+..
T Consensus 443 hnps~ 447 (526)
T KOG2135|consen 443 HNPSP 447 (526)
T ss_pred ecCCc
Confidence 87755
No 203
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.63 E-value=0.11 Score=45.12 Aligned_cols=64 Identities=20% Similarity=0.162 Sum_probs=47.0
Q ss_pred CHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcC--CceecCeEEEEEecCCCCc
Q 011105 306 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLAKPQAD 375 (493)
Q Consensus 306 t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~a~~~~~ 375 (493)
....|+++|..|+.+..+.+++.- +-..|.|.+.++|.+|...|+ +..+.|..|+|.|+.+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 357899999999988887777653 358899999999999999999 9999999999999965443
No 204
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.22 E-value=0.031 Score=53.97 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=61.2
Q ss_pred ceEEEccCCCCC-CHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 294 KALYVKNLPKDI-TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 294 ~~l~v~nl~~~~-t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
+.|-+.-.|+.+ +-++|...|.+||.|..|.+-... -.|.|+|.+..+|-.|.. .++..|++|.|+|.|-.+
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 556666666664 458899999999999999986652 368999999999977776 599999999999999988
Q ss_pred CC
Q 011105 373 QA 374 (493)
Q Consensus 373 ~~ 374 (493)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 43
No 205
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.16 E-value=0.023 Score=52.77 Aligned_cols=80 Identities=24% Similarity=0.455 Sum_probs=62.8
Q ss_pred ceEEEccCCCCCCHHHHH---HHHhcCCcEEEEEeCCCCC--CCC-cccEEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q 011105 294 KALYVKNLPKDITQDRLK---ELFAHHGKITKVVIPPAKP--GQE-RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~---~~f~~~G~v~~v~i~~~~~--~~~-~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 367 (493)
+-+||-+|+..+..+.+. +.|.+||.|..|.+.++.. ... .-.-++|+|...++|..||...+|..+.|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 567888888776555543 4888999999999988662 111 1124899999999999999999999999999888
Q ss_pred EecCCC
Q 011105 368 SLAKPQ 373 (493)
Q Consensus 368 ~~a~~~ 373 (493)
.+..++
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 888765
No 206
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.15 E-value=0.36 Score=39.02 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=53.5
Q ss_pred CCCCCeEEEcCCCCCC----CHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceE
Q 011105 116 PPHGSEVYLGGIPHDA----SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~----te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i 191 (493)
.+.-.||.|+=|..++ +-..|...++.||+|.+|.++- +-.|.|.|.+..+|-+|+.++.. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 3455688888776655 2233556678999999998764 34799999999999999997766 5566666
Q ss_pred EEecc
Q 011105 192 KCSAA 196 (493)
Q Consensus 192 ~V~~~ 196 (493)
.+.+-
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 66543
No 207
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.11 E-value=0.024 Score=52.60 Aligned_cols=80 Identities=21% Similarity=0.415 Sum_probs=62.2
Q ss_pred CeEEEcCCCCCCCHHHHH---HHhhccCCeeEEEEeeCCC--CC-CcceEEEEEeccHHHHHHHHHHhCCCcccCceEEE
Q 011105 120 SEVYLGGIPHDASDDDLR---HFCKSIGEVTEVRIMKGKD--SG-EAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC 193 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~---~~f~~~G~v~~v~i~~~~~--~g-~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V 193 (493)
..+||-+|+..+..+.+. ++|.+||.|..|.+..+.. .+ ...--+||+|...++|..||...++..+.|+.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457888999887666654 6899999999998887652 11 11123899999999999999999999999999877
Q ss_pred eccccc
Q 011105 194 SAAQAK 199 (493)
Q Consensus 194 ~~~~~~ 199 (493)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 666544
No 208
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.85 E-value=0.56 Score=36.87 Aligned_cols=67 Identities=13% Similarity=0.046 Sum_probs=52.2
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCC-cEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 362 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g 362 (493)
..+.+-..|+.++.++|..+.+.+- .|..++|+++... ++=.+.+.|.+.++|..-...+||+.|+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC--ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 5556666677777788877766654 4778999887643 34578899999999999999999999875
No 209
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.33 E-value=0.36 Score=44.11 Aligned_cols=78 Identities=22% Similarity=0.342 Sum_probs=60.2
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCe-EEEEEecCC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ-VLDCSLAKP 372 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~-~i~v~~a~~ 372 (493)
.-|.|-+.|.. .-..|..+|++||.|++.....+ ..+-+|.|.+..+|.+||.. ||+.|+|- -|-|..+..
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCC
Confidence 56777777755 34568899999999998776522 35999999999999999995 99999985 477888777
Q ss_pred CCccCCC
Q 011105 373 QADQKTS 379 (493)
Q Consensus 373 ~~~~~~~ 379 (493)
+......
T Consensus 270 ksvi~~s 276 (350)
T KOG4285|consen 270 KSVINGS 276 (350)
T ss_pred HHHhccc
Confidence 6654433
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.04 E-value=0.42 Score=33.60 Aligned_cols=55 Identities=9% Similarity=0.163 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q 011105 304 DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (493)
Q Consensus 304 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 367 (493)
.++-++|+..+..|.- .+|..++ .|| ||.|.+..+|.++....++..+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5688999999999953 3344444 344 89999999999999999998888776654
No 211
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=92.65 E-value=1.1 Score=47.91 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=12.1
Q ss_pred cCCCCCCHHHHHHHHhc
Q 011105 300 NLPKDITQDRLKELFAH 316 (493)
Q Consensus 300 nl~~~~t~~~l~~~f~~ 316 (493)
+.|..+....|+++|+.
T Consensus 446 ~~pl~~~~~eLrKyF~~ 462 (1024)
T KOG1999|consen 446 KGPLEVPASELRKYFEP 462 (1024)
T ss_pred CCccccchHhhhhhccC
Confidence 34666777888888864
No 212
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=92.60 E-value=0.16 Score=55.43 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=9.3
Q ss_pred CHHHHHHHhhccC
Q 011105 132 SDDDLRHFCKSIG 144 (493)
Q Consensus 132 te~~l~~~f~~~G 144 (493)
|-++|..++..+-
T Consensus 427 s~eel~~lL~~~~ 439 (840)
T PF04147_consen 427 SHEELLELLDGYS 439 (840)
T ss_pred CHHHHHHHHhcCC
Confidence 5677888887663
No 213
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.30 E-value=0.49 Score=34.32 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHhcCCc-----EEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 303 KDITQDRLKELFAHHGK-----ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 303 ~~~t~~~l~~~f~~~G~-----v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
..++..+|..++...+. |-.|.|..+ |+||+-.. +.|..++..|++..+.|++|+|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45788888888876543 668888643 89999855 6888999999999999999999875
No 214
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.08 E-value=0.45 Score=46.04 Aligned_cols=70 Identities=20% Similarity=0.404 Sum_probs=60.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc-CCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccC
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSI-GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG 188 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g 188 (493)
..++.|+|--+|..+|-.||..|+..+ -.|..++|+++. -.++=.+.|.|.+.++|....+.+||..|..
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 347899999999999999999999765 468899999964 3466679999999999999999999988754
No 215
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.00 E-value=0.045 Score=55.54 Aligned_cols=11 Identities=9% Similarity=0.087 Sum_probs=1.9
Q ss_pred EEEEEecCCCC
Q 011105 364 VLDCSLAKPQA 374 (493)
Q Consensus 364 ~i~v~~a~~~~ 374 (493)
+|.++|..+..
T Consensus 456 ~itlSWk~~~~ 466 (556)
T PF05918_consen 456 NITLSWKEAKK 466 (556)
T ss_dssp ----TTS----
T ss_pred ccceeeeeccc
Confidence 36666665554
No 216
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.96 E-value=0.11 Score=54.09 Aligned_cols=76 Identities=21% Similarity=0.213 Sum_probs=64.0
Q ss_pred eEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcee--cCeEEEEEecCC
Q 011105 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI--DGQVLDCSLAKP 372 (493)
Q Consensus 295 ~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~--~g~~i~v~~a~~ 372 (493)
+..+.|.+-..+-.-|..+|++||.|.+++.+++- ..|.|+|.+.+.|..|+.+|+|+.+ .|-+.+|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 34455666677778899999999999999998875 4899999999999999999999876 488999999987
Q ss_pred CCcc
Q 011105 373 QADQ 376 (493)
Q Consensus 373 ~~~~ 376 (493)
-..-
T Consensus 374 ~~~~ 377 (1007)
T KOG4574|consen 374 LPMY 377 (1007)
T ss_pred cccc
Confidence 6443
No 217
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=91.81 E-value=0.087 Score=57.28 Aligned_cols=7 Identities=29% Similarity=0.297 Sum_probs=3.4
Q ss_pred HHHHhhc
Q 011105 136 LRHFCKS 142 (493)
Q Consensus 136 l~~~f~~ 142 (493)
|-++|+.
T Consensus 741 La~~Fk~ 747 (784)
T PF04931_consen 741 LAAIFKE 747 (784)
T ss_pred HHHHHHH
Confidence 4445544
No 218
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.65 E-value=2.6 Score=44.69 Aligned_cols=61 Identities=10% Similarity=0.168 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHhcCCcE-----EEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 303 KDITQDRLKELFAHHGKI-----TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 303 ~~~t~~~l~~~f~~~G~v-----~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
..++..+|-.++..-+.| -.|.|.. .|.||+-. ...|...+..|++..+.|++|.|..+..
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcC-hhhHHHHHHHhccccccCCceEEEECCC
Confidence 457777777777655443 4566653 38999984 4678899999999999999999998853
No 219
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.31 E-value=0.55 Score=40.77 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=45.8
Q ss_pred CHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhC--CCcccCceEEEeccc
Q 011105 132 SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN--SCELKGKKIKCSAAQ 197 (493)
Q Consensus 132 te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~--~~~i~g~~i~V~~~~ 197 (493)
....|+++|..++.+..+.+++.- +=..|.|.+.++|.+|...|+ +..+.|..++|.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 347899999999999988887653 368899999999999999999 889999999998874
No 220
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.27 E-value=0.19 Score=50.99 Aligned_cols=72 Identities=19% Similarity=0.300 Sum_probs=62.9
Q ss_pred ccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q 011105 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (493)
Q Consensus 290 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 369 (493)
.....++||+|+...+..+-++.+...||.|..+.... |+|..|..+..+..|+..|+-..+++..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 33458999999999999999999999999998876643 999999999999999999999999998877765
Q ss_pred c
Q 011105 370 A 370 (493)
Q Consensus 370 a 370 (493)
.
T Consensus 108 d 108 (668)
T KOG2253|consen 108 D 108 (668)
T ss_pred h
Confidence 4
No 221
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.26 E-value=0.14 Score=53.22 Aligned_cols=70 Identities=23% Similarity=0.349 Sum_probs=60.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcc--cCceEEEeccc
Q 011105 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL--KGKKIKCSAAQ 197 (493)
Q Consensus 122 l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i--~g~~i~V~~~~ 197 (493)
..+.|.+-.++-..|..+|..||.|.+++.+++-+ .|.|.|.+.+.|..|+++|+|.++ .|-+.+|.+++
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 45556666778888999999999999999988765 899999999999999999999875 67788888775
No 222
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.93 E-value=0.84 Score=44.28 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=58.5
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCC-cEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 362 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g 362 (493)
...|+|-.+|..+|..||..|+..|- .|.+|+|+++... .+=.+.|.|.+.++|..-...+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 58999999999999999999998664 4889999996543 24578899999999999999999999875
No 223
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.67 E-value=0.49 Score=43.31 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=54.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCce-EEEeccc
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKK-IKCSAAQ 197 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~-i~V~~~~ 197 (493)
..=|-|-++|+..+. -|..+|.+||.|+....- .+-.+-+|.|.+.-+|.+||. .++..|.|.. |-|..|.
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 345677787776543 466799999999877654 334599999999999999998 8999888764 4555554
Q ss_pred c
Q 011105 198 A 198 (493)
Q Consensus 198 ~ 198 (493)
.
T Consensus 269 D 269 (350)
T KOG4285|consen 269 D 269 (350)
T ss_pred C
Confidence 3
No 224
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.44 E-value=1.8 Score=31.28 Aligned_cols=59 Identities=22% Similarity=0.416 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHhhccC-----CeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 129 HDASDDDLRHFCKSIG-----EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 129 ~~~te~~l~~~f~~~G-----~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
..++..+|..++...+ .|-.|.|... |+||+-... .|..++..|++..+.|++|.|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3567788888887653 4667777654 889988665 788889999999999999999754
No 225
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.06 E-value=0.26 Score=50.02 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=61.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+...+|||+||...+..+-++.++..+|.|.+++.+. |+|..|.....+..|+..++...+.+..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4567999999999999999999999999999887654 999999999999999998888888887776654
No 226
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=89.01 E-value=0.55 Score=35.09 Aligned_cols=56 Identities=16% Similarity=0.405 Sum_probs=41.2
Q ss_pred EEEEeccHHHHHHHHHHhCCC--cccCceEEEe---------------cccccccccccCCCCCCCHHHHHHHH
Q 011105 164 AFVTFRTKELASQAIEELNSC--ELKGKKIKCS---------------AAQAKHRLFIGNVPRNWGEDDMRKAV 220 (493)
Q Consensus 164 afV~F~~~e~A~~Al~~l~~~--~i~g~~i~V~---------------~~~~~~~l~v~~l~~~~~~~~l~~~f 220 (493)
|+|+|.+...|.+.++ +..+ .+.++.+.|. ....++++.|++||..++++.|++.+
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 6899999999999987 3332 2445444443 33467789999999999999987743
No 227
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.75 E-value=1.4 Score=44.13 Aligned_cols=78 Identities=26% Similarity=0.329 Sum_probs=60.4
Q ss_pred cceEEEccCCCC-CCHHHHHHHHhcC----CcEEEEEeCCCCCC----------CC------------------------
Q 011105 293 VKALYVKNLPKD-ITQDRLKELFAHH----GKITKVVIPPAKPG----------QE------------------------ 333 (493)
Q Consensus 293 ~~~l~v~nl~~~-~t~~~l~~~f~~~----G~v~~v~i~~~~~~----------~~------------------------ 333 (493)
+++|-|.||.|. +...+|.-+|+.| |.|.+|.|.....+ +.
T Consensus 174 T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~~ 253 (650)
T KOG2318|consen 174 TKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEEDV 253 (650)
T ss_pred cceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhhH
Confidence 489999999998 8889999999866 57889888763211 11
Q ss_pred -------------cccEEEEEeCCHHHHHHHHHhcCCceecC--eEEEEEec
Q 011105 334 -------------RSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLA 370 (493)
Q Consensus 334 -------------~~g~~fV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~a 370 (493)
..=||.|+|.+...|.+....+.|..|.. ..|.+.|.
T Consensus 254 ~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 254 DREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred HHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 01289999999999999999999999975 45555554
No 228
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.40 E-value=1.3 Score=42.29 Aligned_cols=55 Identities=13% Similarity=0.195 Sum_probs=45.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHH
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGE-VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~-v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~ 179 (493)
-...|-|.++|.....+||...|+.|+. =..|+++-+. .||-.|.+...|..||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 3468999999999999999999999864 3456666553 79999999999999997
No 229
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=87.90 E-value=0.32 Score=46.63 Aligned_cols=8 Identities=13% Similarity=0.376 Sum_probs=4.2
Q ss_pred CCHHHHHH
Q 011105 131 ASDDDLRH 138 (493)
Q Consensus 131 ~te~~l~~ 138 (493)
+|.+++..
T Consensus 190 LT~eDF~k 197 (324)
T PF05285_consen 190 LTPEDFAK 197 (324)
T ss_pred CCHHHHHH
Confidence 46666543
No 230
>COG4907 Predicted membrane protein [Function unknown]
Probab=85.36 E-value=0.75 Score=44.68 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=9.9
Q ss_pred HHHHHHHHhcCC-----cEEEEEeCC
Q 011105 307 QDRLKELFAHHG-----KITKVVIPP 327 (493)
Q Consensus 307 ~~~l~~~f~~~G-----~v~~v~i~~ 327 (493)
++.++++++.|. ++++|++..
T Consensus 488 W~aFKnfLsd~s~lke~~pesI~~W~ 513 (595)
T COG4907 488 WQAFKNFLSDYSQLKEAKPESIHLWE 513 (595)
T ss_pred HHHHHHHHHhHHHHhhCCCcceehHh
Confidence 344555555443 244555543
No 231
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=84.21 E-value=3.8 Score=28.80 Aligned_cols=55 Identities=11% Similarity=0.248 Sum_probs=42.4
Q ss_pred CCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEE
Q 011105 130 DASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC 193 (493)
Q Consensus 130 ~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V 193 (493)
.++-++|+..+..|.-. +|+.++ .|| ||.|.+..+|++|....++..+....+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 57888999999999642 344443 243 79999999999999999998887776654
No 232
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=83.02 E-value=0.37 Score=49.09 Aligned_cols=12 Identities=42% Similarity=0.778 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC
Q 011105 482 DNGRGRSRYNPY 493 (493)
Q Consensus 482 ~gg~g~~~~~~y 493 (493)
|||||||+.|+|
T Consensus 544 ggg~grg~~r~~ 555 (556)
T PF05918_consen 544 GGGRGRGRGRGF 555 (556)
T ss_dssp ------------
T ss_pred CCCCCCcccccC
Confidence 445555555554
No 233
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=82.55 E-value=0.29 Score=48.55 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=54.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccC
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG 188 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g 188 (493)
....|+|||+|++++++-.+|..+|+.+--+..+.+.....-.....+.||+|+---....|+.+||+..+..
T Consensus 228 ~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 228 THKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 3456899999999999999999999998766666655443334456689999987666666666677665543
No 234
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=81.39 E-value=46 Score=30.93 Aligned_cols=62 Identities=8% Similarity=0.215 Sum_probs=50.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCC-------CCCcceEEEEEeccHHHHHHHHH
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKD-------SGEAKGYAFVTFRTKELASQAIE 179 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~-------~g~~~g~afV~F~~~e~A~~Al~ 179 (493)
.+|.|.+.||..+++-..+...|-+||+|++|.++.+.. .-+......+-|-+.+.+.....
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYN 82 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYN 82 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHH
Confidence 467899999999999999999999999999999998761 12334578889999888766543
No 235
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=81.01 E-value=22 Score=37.67 Aligned_cols=16 Identities=6% Similarity=0.108 Sum_probs=6.7
Q ss_pred eEEEeeCCHHHHHHHH
Q 011105 245 FAFIEYYNHACAEYSR 260 (493)
Q Consensus 245 ~~fv~f~~~~~a~~a~ 260 (493)
.|.+-|.+..-...|+
T Consensus 633 IalLPFiDe~rLl~a~ 648 (931)
T KOG2044|consen 633 IALLPFIDERRLLSAV 648 (931)
T ss_pred cccccccchhhHHHHH
Confidence 3444444444333333
No 236
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses.
Probab=80.60 E-value=0.94 Score=38.85 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=9.0
Q ss_pred CCCCCCCCcCCCCC
Q 011105 1 MPRTRGSTAAADNP 14 (493)
Q Consensus 1 ~p~~~~~~~~~~~~ 14 (493)
|||++.++......
T Consensus 1 m~p~~~~~~~~~~~ 14 (187)
T PF11081_consen 1 MPPKKNAKKLKQQP 14 (187)
T ss_pred CCCCCcccccccCC
Confidence 88887775554443
No 237
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=79.53 E-value=2.2 Score=36.20 Aligned_cols=77 Identities=14% Similarity=0.205 Sum_probs=57.4
Q ss_pred ceEEEccCCCCCCH-----HHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCe-EEEE
Q 011105 294 KALYVKNLPKDITQ-----DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ-VLDC 367 (493)
Q Consensus 294 ~~l~v~nl~~~~t~-----~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~-~i~v 367 (493)
..+++.+|+..+-. .....+|.+|-.....++++. .++..|.|.+.+.|..|...++...|.|+ .+++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 55777777655332 334567777766666666554 35778999999999999999999999998 8999
Q ss_pred EecCCCCcc
Q 011105 368 SLAKPQADQ 376 (493)
Q Consensus 368 ~~a~~~~~~ 376 (493)
-++.+....
T Consensus 85 yfaQ~~~~~ 93 (193)
T KOG4019|consen 85 YFAQPGHPE 93 (193)
T ss_pred EEccCCCcc
Confidence 999887543
No 238
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=78.22 E-value=0.85 Score=47.01 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=8.8
Q ss_pred EEEEeCCHHHHHHHHHhcC
Q 011105 338 GFVHFAERSSAMKALKNTE 356 (493)
Q Consensus 338 ~fV~f~~~~~a~~a~~~l~ 356 (493)
-|+.-.+.++-..|++.|-
T Consensus 624 IFcsImsaeDyiDAFEklL 642 (822)
T KOG2141|consen 624 IFCSIMSAEDYIDAFEKLL 642 (822)
T ss_pred heeeeecchHHHHHHHHHH
Confidence 3444444454444444433
No 239
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=75.43 E-value=4.2 Score=34.11 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=29.8
Q ss_pred ceEEEccCCCC-CCHHHHHHHHhcCCcEEEEEeCCCC
Q 011105 294 KALYVKNLPKD-ITQDRLKELFAHHGKITKVVIPPAK 329 (493)
Q Consensus 294 ~~l~v~nl~~~-~t~~~l~~~f~~~G~v~~v~i~~~~ 329 (493)
.-|.|.|||.. .+++.|+.+.+.+|.+..+......
T Consensus 105 vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 105 VWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred hhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 45778899987 7888899999999999998876554
No 240
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=75.04 E-value=2.1 Score=32.00 Aligned_cols=68 Identities=15% Similarity=0.222 Sum_probs=40.4
Q ss_pred EEEeeCCHHHHHHHHHHcCCCCcccCCCCCeeeecCCCC-----cccccccccceEEEccCCCCCCHHHHHHHH
Q 011105 246 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN-----AESSAASQVKALYVKNLPKDITQDRLKELF 314 (493)
Q Consensus 246 ~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 314 (493)
|+|+|.....|...++.-. ..+.+....+.+....-.. ..-......++|-|.|||..++++.|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~-~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKK-HPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCE-EEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 5789999998888776432 2333443333332211110 001122224889999999999999998764
No 241
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=72.02 E-value=2.9 Score=40.21 Aligned_cols=6 Identities=33% Similarity=0.556 Sum_probs=2.5
Q ss_pred EEEeeC
Q 011105 149 VRIMKG 154 (493)
Q Consensus 149 v~i~~~ 154 (493)
-+|+.+
T Consensus 187 ~rILT~ 192 (324)
T PF05285_consen 187 TRILTP 192 (324)
T ss_pred ccCCCH
Confidence 344443
No 242
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=71.91 E-value=21 Score=34.45 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=30.1
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhhcc----CCeeEEEEeeC
Q 011105 117 PHGSEVYLGGIPHD-ASDDDLRHFCKSI----GEVTEVRIMKG 154 (493)
Q Consensus 117 ~~~~~l~V~nLp~~-~te~~l~~~f~~~----G~v~~v~i~~~ 154 (493)
..+.+|-|-||.|+ +.-.+|...|+.| |.|..|.|+..
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 34568999999985 6778898888876 67888888765
No 243
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=71.19 E-value=14 Score=41.04 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=5.7
Q ss_pred CCCCCCCHHHHHH
Q 011105 126 GIPHDASDDDLRH 138 (493)
Q Consensus 126 nLp~~~te~~l~~ 138 (493)
.||.....-+|-.
T Consensus 1448 ~lp~~~~k~~mss 1460 (1640)
T KOG0262|consen 1448 KLPLDKEKLDMSS 1460 (1640)
T ss_pred EecCCCcchHHHH
Confidence 4454444444433
No 244
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=69.28 E-value=11 Score=34.40 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=36.1
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEE-EEEeCCCCCCCCcccEEEEEeCCH
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKIT-KVVIPPAKPGQERSRYGFVHFAER 345 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~~~~~g~~fV~f~~~ 345 (493)
..-|++.||+.++...+|+..+.+-+.+- ++.+-- ..|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCc
Confidence 36799999999999999999998876543 444321 257899999764
No 245
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=68.86 E-value=3.4 Score=43.18 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=6.8
Q ss_pred EcCCCCCCCHHHHHHH
Q 011105 124 LGGIPHDASDDDLRHF 139 (493)
Q Consensus 124 V~nLp~~~te~~l~~~ 139 (493)
++.+|--++-++..++
T Consensus 960 ~~d~pvFAsaeey~hl 975 (988)
T KOG2038|consen 960 LNDSPVFASAEEYAHL 975 (988)
T ss_pred cccchhhhhHHHHHHH
Confidence 4455533344443333
No 246
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=68.72 E-value=3.4 Score=43.63 Aligned_cols=7 Identities=14% Similarity=-0.183 Sum_probs=3.2
Q ss_pred eEEEEEe
Q 011105 363 QVLDCSL 369 (493)
Q Consensus 363 ~~i~v~~ 369 (493)
++|.|..
T Consensus 544 ~PlVla~ 550 (622)
T PF02724_consen 544 LPLVLAA 550 (622)
T ss_pred cceeEEe
Confidence 4454443
No 247
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=67.70 E-value=12 Score=34.09 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=35.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCee-EEEEeeCCCCCCcceEEEEEeccH
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVT-EVRIMKGKDSGEAKGYAFVTFRTK 171 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~-~v~i~~~~~~g~~~g~afV~F~~~ 171 (493)
.+-|+|.|||.++.-.||+..+.+.+.+- ++.. .-..|-||+.|-+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 34599999999999999999998877543 2222 22467899999754
No 248
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.72 E-value=13 Score=35.77 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=49.0
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcE-EEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeE
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV 364 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v-~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~ 364 (493)
.+.|-|.++|...-.++|..+|+.|+.- -+|.++.+. .+|-.|.+...|..||.. ...++.=|+
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~-kh~~lKiRp 455 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL-KHDWLKIRP 455 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc-cCceEEeee
Confidence 4889999999999889999999988752 355565553 899999999999999984 333443333
No 249
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=64.67 E-value=16 Score=25.86 Aligned_cols=63 Identities=8% Similarity=0.060 Sum_probs=46.3
Q ss_pred HHHHHHHhcCC-cEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 308 DRLKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 308 ~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
.+|.+.|..+| .|..|+-+...+++..-..-||+.....+-.. .|+-..|.+++|.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46788888888 58889998888877666777888876544333 35667788999888875543
No 250
>PHA03169 hypothetical protein; Provisional
Probab=63.63 E-value=41 Score=32.23 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=6.4
Q ss_pred HHHHhhccC
Q 011105 136 LRHFCKSIG 144 (493)
Q Consensus 136 l~~~f~~~G 144 (493)
.+.||.++-
T Consensus 303 r~~Ffr~~l 311 (413)
T PHA03169 303 RRRFFRQVL 311 (413)
T ss_pred HHHHHHHhc
Confidence 567888774
No 251
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=62.55 E-value=1.3 Score=44.22 Aligned_cols=70 Identities=13% Similarity=0.162 Sum_probs=54.1
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 362 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g 362 (493)
.+.|||+|++++++-.+|..+|..+--+..+.+.....-....-+..|+|.---....|+.+||+..+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 4789999999999999999999988777776665554333334578899988777777888888766543
No 252
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.49 E-value=6.2 Score=38.64 Aligned_cols=9 Identities=22% Similarity=0.434 Sum_probs=4.5
Q ss_pred cCeEEEEEe
Q 011105 361 DGQVLDCSL 369 (493)
Q Consensus 361 ~g~~i~v~~ 369 (493)
.||+|+...
T Consensus 445 KgRKLrY~V 453 (483)
T KOG2773|consen 445 KGRKLRYHV 453 (483)
T ss_pred cCceeeeeh
Confidence 455555443
No 253
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.35 E-value=1.4 Score=42.46 Aligned_cols=80 Identities=9% Similarity=-0.022 Sum_probs=65.9
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
.+.|+..||..+++.++.-+|..||.|..+.+-+.-.++...-.+||+-.+ .+|..+|.-+.-..+.+..++|.++...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 456888999999999999999999999999888877777766788888765 6677777777777888888999888754
Q ss_pred C
Q 011105 374 A 374 (493)
Q Consensus 374 ~ 374 (493)
.
T Consensus 83 ~ 83 (572)
T KOG4365|consen 83 S 83 (572)
T ss_pred h
Confidence 3
No 254
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=61.01 E-value=26 Score=24.83 Aligned_cols=63 Identities=11% Similarity=0.177 Sum_probs=45.1
Q ss_pred HHHHHHHhcCC-cEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 308 DRLKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 308 ~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
++|.+.|...| .|..|+-+....+...-..-||+.+...+... .++=..|.+..|+|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 46788888777 57788888877666656688888877655333 34556788898888876554
No 255
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=59.70 E-value=2.7 Score=37.94 Aligned_cols=69 Identities=30% Similarity=0.488 Sum_probs=45.5
Q ss_pred CCCeEEEcCCCCC------------CCHHHHHHHhhccCCeeEEEEeeC-C----CCCCcce-----E---------EEE
Q 011105 118 HGSEVYLGGIPHD------------ASDDDLRHFCKSIGEVTEVRIMKG-K----DSGEAKG-----Y---------AFV 166 (493)
Q Consensus 118 ~~~~l~V~nLp~~------------~te~~l~~~f~~~G~v~~v~i~~~-~----~~g~~~g-----~---------afV 166 (493)
..-||++.+||-. -+++-|+..|..||.|..|.|... + -+++..| | |||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3458999999832 356779999999999998887432 1 2344433 3 456
Q ss_pred EeccHHHHHHHHHHhCCCcc
Q 011105 167 TFRTKELASQAIEELNSCEL 186 (493)
Q Consensus 167 ~F~~~e~A~~Al~~l~~~~i 186 (493)
+|.....-..|+.+|.+..|
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 66666555666666666543
No 256
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=59.07 E-value=12 Score=29.73 Aligned_cols=56 Identities=21% Similarity=0.300 Sum_probs=31.2
Q ss_pred eEEEcCCCCCC---------CHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHH-HHHHHHH
Q 011105 121 EVYLGGIPHDA---------SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE-LASQAIE 179 (493)
Q Consensus 121 ~l~V~nLp~~~---------te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e-~A~~Al~ 179 (493)
++.|-|++... +.+.|++.|..|.++. ++.+.++ .-..|++.|+|.+-- --..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 56777876543 5578999999998875 5555554 357899999998753 3444554
No 257
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=58.72 E-value=16 Score=33.71 Aligned_cols=80 Identities=15% Similarity=0.271 Sum_probs=59.4
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCC-------CCCcccEEEEEeCCHHHHHHH----HHhcC--Cce
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP-------GQERSRYGFVHFAERSSAMKA----LKNTE--KYE 359 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~-------~~~~~g~~fV~f~~~~~a~~a----~~~l~--~~~ 359 (493)
++.|.+.|+..+++-..+...|.+||.|++|.++.+.. .........+.|-+.+.+..- ++.|+ ...
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999998761 112235788999998877543 22233 234
Q ss_pred ecCeEEEEEecCC
Q 011105 360 IDGQVLDCSLAKP 372 (493)
Q Consensus 360 ~~g~~i~v~~a~~ 372 (493)
+....|.|+|..-
T Consensus 95 L~S~~L~lsFV~l 107 (309)
T PF10567_consen 95 LKSESLTLSFVSL 107 (309)
T ss_pred cCCcceeEEEEEE
Confidence 6677787777764
No 258
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=58.64 E-value=7.4 Score=43.05 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=5.0
Q ss_pred HHHHHHhcCCc
Q 011105 309 RLKELFAHHGK 319 (493)
Q Consensus 309 ~l~~~f~~~G~ 319 (493)
+|..+|.-||.
T Consensus 1541 Ev~~VF~vYGI 1551 (1640)
T KOG0262|consen 1541 EVNNVFKVYGI 1551 (1640)
T ss_pred HHHHhhhheee
Confidence 34444444443
No 259
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=58.02 E-value=7 Score=38.35 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=8.1
Q ss_pred CCcccCceEEEec
Q 011105 183 SCELKGKKIKCSA 195 (493)
Q Consensus 183 ~~~i~g~~i~V~~ 195 (493)
.-.+.||+|.|..
T Consensus 423 SGSMrGRpItvAa 435 (620)
T COG4547 423 SGSMRGRPITVAA 435 (620)
T ss_pred CCCcCCcceehhH
Confidence 3356777777753
No 260
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=54.98 E-value=10 Score=32.33 Aligned_cols=75 Identities=19% Similarity=0.231 Sum_probs=53.6
Q ss_pred CCeEEEcCCCCCCCH-----HHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCc-eEE
Q 011105 119 GSEVYLGGIPHDASD-----DDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGK-KIK 192 (493)
Q Consensus 119 ~~~l~V~nLp~~~te-----~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~-~i~ 192 (493)
.+++++.+|+..+-. .....+|.+|-+.....+++ +.+..-|.|.+++.|..|...++...|.|+ .+.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 356778888765422 22446677776666555554 345778999999999999999999999988 777
Q ss_pred Eeccccc
Q 011105 193 CSAAQAK 199 (493)
Q Consensus 193 V~~~~~~ 199 (493)
..++.+.
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 7766643
No 261
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=53.49 E-value=9.1 Score=38.53 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=12.4
Q ss_pred CHHHHHHHHHhcCCceecCeEEE
Q 011105 344 ERSSAMKALKNTEKYEIDGQVLD 366 (493)
Q Consensus 344 ~~~~a~~a~~~l~~~~~~g~~i~ 366 (493)
+-+++.+|-+.+....|.|++|+
T Consensus 408 SWeAkkk~Ke~~~~a~FqGKKI~ 430 (432)
T PF09073_consen 408 SWEAKKKAKEKQKIAKFQGKKIV 430 (432)
T ss_pred cHHHHHHHHHHhccCCCCCCccc
Confidence 44555555555555555555553
No 262
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=53.29 E-value=24 Score=33.99 Aligned_cols=56 Identities=23% Similarity=0.272 Sum_probs=43.2
Q ss_pred EEEEeccHHHHHHHHHHhCCCcccCceEEEecccccccccccCCCCCCCHHHHHHHHH
Q 011105 164 AFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVT 221 (493)
Q Consensus 164 afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~~~~l~v~~l~~~~~~~~l~~~f~ 221 (493)
|||+|.+..+|..|++.+.... .+.+.|..+.....+.=.||.....+..++.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccccccCCChHHHHHHHHHH
Confidence 7999999999999998555433 3566888888888888888877777766666543
No 263
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=51.37 E-value=15 Score=35.34 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=47.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEeeCCC--CCCcceEEEEEeccHHHHHHHHHHhCCCcc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGE-VTEVRIMKGKD--SGEAKGYAFVTFRTKELASQAIEELNSCEL 186 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~-v~~v~i~~~~~--~g~~~g~afV~F~~~e~A~~Al~~l~~~~i 186 (493)
.-+.|.|++||+.+++.+|.+.+..|-. |....+..... ...-.+.|||.|...++.......++++.+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 3467999999999999999887776543 22222221110 012356799999999998887777777664
No 264
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=50.68 E-value=7 Score=42.38 Aligned_cols=11 Identities=27% Similarity=0.328 Sum_probs=5.8
Q ss_pred CeEEEcCCCCC
Q 011105 120 SEVYLGGIPHD 130 (493)
Q Consensus 120 ~~l~V~nLp~~ 130 (493)
+.+||-.+|..
T Consensus 905 ~~~wvl~~Pi~ 915 (1096)
T TIGR00927 905 QAIYLFLLPIV 915 (1096)
T ss_pred eeEeEEecchh
Confidence 44566555543
No 265
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=50.33 E-value=21 Score=36.45 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=7.7
Q ss_pred CeEEEcCCCCCC
Q 011105 120 SEVYLGGIPHDA 131 (493)
Q Consensus 120 ~~l~V~nLp~~~ 131 (493)
++=.|+|||..+
T Consensus 119 ~rntvgnipl~w 130 (733)
T KOG0650|consen 119 TRNTVGNIPLKW 130 (733)
T ss_pred hhcccCCccccc
Confidence 445578888554
No 266
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=49.19 E-value=15 Score=35.99 Aligned_cols=10 Identities=30% Similarity=0.335 Sum_probs=4.6
Q ss_pred CeeEEEEeeC
Q 011105 145 EVTEVRIMKG 154 (493)
Q Consensus 145 ~v~~v~i~~~ 154 (493)
.|+.|.+..+
T Consensus 144 s~~~vals~d 153 (479)
T KOG0299|consen 144 SVTSVALSPD 153 (479)
T ss_pred cceEEEeecc
Confidence 3444444444
No 267
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=48.54 E-value=7.1 Score=38.85 Aligned_cols=8 Identities=13% Similarity=0.048 Sum_probs=5.0
Q ss_pred EEEEEeCC
Q 011105 337 YGFVHFAE 344 (493)
Q Consensus 337 ~~fV~f~~ 344 (493)
-|.+.+.+
T Consensus 443 ~ap~~~s~ 450 (694)
T KOG4264|consen 443 RAPSHQSD 450 (694)
T ss_pred cccccccc
Confidence 56666655
No 268
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=48.43 E-value=18 Score=36.10 Aligned_cols=12 Identities=33% Similarity=0.393 Sum_probs=5.9
Q ss_pred EEeccHHHHHHH
Q 011105 166 VTFRTKELASQA 177 (493)
Q Consensus 166 V~F~~~e~A~~A 177 (493)
=.|...+.|-+.
T Consensus 214 DrF~e~eQaPKS 225 (694)
T KOG4264|consen 214 DRFDEKEQAPKS 225 (694)
T ss_pred ccchhhhcCchH
Confidence 345555555443
No 269
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=48.17 E-value=45 Score=23.05 Aligned_cols=20 Identities=20% Similarity=0.632 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCcEEEEEeCC
Q 011105 308 DRLKELFAHHGKITKVVIPP 327 (493)
Q Consensus 308 ~~l~~~f~~~G~v~~v~i~~ 327 (493)
.+||++|+..|.|.-+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 67999999999988766643
No 270
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only]
Probab=47.58 E-value=1.2e+02 Score=27.56 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=5.4
Q ss_pred CHHHHHHHHHhh
Q 011105 212 GEDDMRKAVTKI 223 (493)
Q Consensus 212 ~~~~l~~~f~~~ 223 (493)
+.+.|.+++.++
T Consensus 98 d~~ti~~ilk~i 109 (390)
T KOG2192|consen 98 DIETIGEILKKI 109 (390)
T ss_pred cHHHHHHHHHHH
Confidence 344444444443
No 271
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins. Argonaut (AGO) proteins are involved in RNA-mediated post-transcriptional gene silencing [].
Probab=47.45 E-value=34 Score=26.06 Aligned_cols=6 Identities=50% Similarity=0.806 Sum_probs=2.3
Q ss_pred CCCCCC
Q 011105 465 SGRGGA 470 (493)
Q Consensus 465 gg~gg~ 470 (493)
||++++
T Consensus 18 gG~~~y 23 (104)
T PF12764_consen 18 GGRPGY 23 (104)
T ss_pred CCCCCC
Confidence 333333
No 272
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=47.26 E-value=12 Score=29.87 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=25.8
Q ss_pred ceEEEccCCCC---------CCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCH
Q 011105 294 KALYVKNLPKD---------ITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAER 345 (493)
Q Consensus 294 ~~l~v~nl~~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~ 345 (493)
-++.|-|++.. ++.+.|++.|+.|..+. ++.+.+.. -..|+++|.|.+.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKD 66 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SS
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCC
Confidence 35667777543 35578999999998765 44445543 2368999999863
No 273
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=46.82 E-value=25 Score=30.00 Aligned_cols=55 Identities=29% Similarity=0.344 Sum_probs=37.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcc-CCeeEEEEeeCCC-CCCcceEEEEEeccHHHHHHHHH
Q 011105 120 SEVYLGGIPHDASDDDLRHFCKSI-GEVTEVRIMKGKD-SGEAKGYAFVTFRTKELASQAIE 179 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~~~f~~~-G~v~~v~i~~~~~-~g~~~g~afV~F~~~e~A~~Al~ 179 (493)
+++|.. +|++.|..+.... |.+..|..-+..+ ....+|..||+|.+.+.|..+++
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 456655 4555555444322 6788777655433 12678999999999999999887
No 274
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=45.42 E-value=42 Score=23.78 Aligned_cols=63 Identities=16% Similarity=0.308 Sum_probs=45.1
Q ss_pred HHHHHHhhccC-CeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccccc
Q 011105 134 DDLRHFCKSIG-EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199 (493)
Q Consensus 134 ~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~~ 199 (493)
++|++.|...| .|..|.-+..+.+......-||++....+...+ ++=..|.+..|.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 46777787777 577777777776677778889998877664444 3445688888999876644
No 275
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=42.99 E-value=44 Score=23.64 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=45.0
Q ss_pred HHHHHHhhccC-CeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccccc
Q 011105 134 DDLRHFCKSIG-EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199 (493)
Q Consensus 134 ~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~~ 199 (493)
.+|.+.|..+| .|..+.-+..+++......-||+.....+... .++=..|.+++|.|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46778888877 57778878777767677788888877654444 24555688889999876543
No 276
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=42.62 E-value=17 Score=32.46 Aligned_cols=12 Identities=0% Similarity=-0.033 Sum_probs=5.3
Q ss_pred CCCHHHHHHHhh
Q 011105 130 DASDDDLRHFCK 141 (493)
Q Consensus 130 ~~te~~l~~~f~ 141 (493)
++++.++++.|+
T Consensus 149 S~DW~Em~~Ais 160 (217)
T PF07423_consen 149 SVDWNEMLKAIS 160 (217)
T ss_pred CcCHHHHHHHHH
Confidence 344444444443
No 277
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.11 E-value=63 Score=30.98 Aligned_cols=18 Identities=39% Similarity=0.641 Sum_probs=12.1
Q ss_pred CCHHHHHHHHhcCCcEEE
Q 011105 305 ITQDRLKELFAHHGKITK 322 (493)
Q Consensus 305 ~t~~~l~~~f~~~G~v~~ 322 (493)
.+...|+++|...+.|..
T Consensus 216 ~~~a~lKeV~p~a~ki~e 233 (377)
T KOG1308|consen 216 ANSATLKEVFPNAGKIEE 233 (377)
T ss_pred HHHHHHHHhccchhhhhh
Confidence 455678888877766654
No 278
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=41.03 E-value=17 Score=39.62 Aligned_cols=8 Identities=25% Similarity=0.509 Sum_probs=3.6
Q ss_pred eEEEEEec
Q 011105 162 GYAFVTFR 169 (493)
Q Consensus 162 g~afV~F~ 169 (493)
.+-.|.|-
T Consensus 932 k~y~ltFi 939 (1096)
T TIGR00927 932 KFFVITFL 939 (1096)
T ss_pred ceeeehHH
Confidence 34445553
No 279
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=39.72 E-value=2.2e+02 Score=27.21 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=8.9
Q ss_pred CHHHHHHHHHhhCC
Q 011105 212 GEDDMRKAVTKIGP 225 (493)
Q Consensus 212 ~~~~l~~~f~~~g~ 225 (493)
.+..|..+|...+.
T Consensus 100 NE~kLn~AF~~s~~ 113 (441)
T KOG1902|consen 100 NEKKLNLAFRSSRS 113 (441)
T ss_pred cHHHHHHHHhhcCc
Confidence 45667777776553
No 280
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=39.08 E-value=80 Score=30.68 Aligned_cols=78 Identities=27% Similarity=0.389 Sum_probs=55.2
Q ss_pred cceEEEccCCCC-CCHHHHHHHHhcC----CcEEEEEeCCCCCC------------------------------------
Q 011105 293 VKALYVKNLPKD-ITQDRLKELFAHH----GKITKVVIPPAKPG------------------------------------ 331 (493)
Q Consensus 293 ~~~l~v~nl~~~-~t~~~l~~~f~~~----G~v~~v~i~~~~~~------------------------------------ 331 (493)
+++|-|-||.|. +...+|..+|+.| |+|..|.|.....+
T Consensus 146 tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~~s 225 (622)
T COG5638 146 TKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNVFS 225 (622)
T ss_pred ccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccchh
Confidence 488999999987 7788999999866 56777776542100
Q ss_pred ----C-------------------------CcccEEEEEeCCHHHHHHHHHhcCCceecC--eEEEEEec
Q 011105 332 ----Q-------------------------ERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLA 370 (493)
Q Consensus 332 ----~-------------------------~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~a 370 (493)
+ ...=||.|.|.+...+......+.|..+.. ..+.+.|.
T Consensus 226 d~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 226 DRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred hhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 0 001178899999999999999888888765 34444443
No 281
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=38.87 E-value=20 Score=36.98 Aligned_cols=16 Identities=6% Similarity=0.204 Sum_probs=8.3
Q ss_pred CCeEEEcCCCCCCCHH
Q 011105 119 GSEVYLGGIPHDASDD 134 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~ 134 (493)
..+||-+-....+.-+
T Consensus 295 ~Y~vfTt~fDe~i~A~ 310 (600)
T TIGR01651 295 DYKVFTTAFDETVDAE 310 (600)
T ss_pred cceecchhhhhhccHh
Confidence 4566666555444333
No 282
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=38.56 E-value=46 Score=33.62 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=11.7
Q ss_pred EEcCCCCCCCHHHHHHHh
Q 011105 123 YLGGIPHDASDDDLRHFC 140 (493)
Q Consensus 123 ~V~nLp~~~te~~l~~~f 140 (493)
.|..||--++-++..+++
T Consensus 802 ~lk~lpvfa~ad~ya~~l 819 (821)
T COG5593 802 MLKSLPVFASADDYAQYL 819 (821)
T ss_pred HHhcCCcccchHHHHHHh
Confidence 466777777766665554
No 283
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only]
Probab=38.29 E-value=2.4e+02 Score=25.84 Aligned_cols=7 Identities=29% Similarity=0.482 Sum_probs=2.5
Q ss_pred CCceecC
Q 011105 356 EKYEIDG 362 (493)
Q Consensus 356 ~~~~~~g 362 (493)
....|.|
T Consensus 192 ~e~pikg 198 (390)
T KOG2192|consen 192 SESPIKG 198 (390)
T ss_pred hcCCcCC
Confidence 3333333
No 284
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=37.92 E-value=26 Score=34.66 Aligned_cols=13 Identities=8% Similarity=-0.008 Sum_probs=5.5
Q ss_pred CeEEEcCCCCCCC
Q 011105 120 SEVYLGGIPHDAS 132 (493)
Q Consensus 120 ~~l~V~nLp~~~t 132 (493)
.+||-+-....+.
T Consensus 317 Ykvftr~fDe~v~ 329 (620)
T COG4547 317 YKVFTREFDEIVL 329 (620)
T ss_pred ccccchhhhhhhh
Confidence 3444444444333
No 285
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=37.35 E-value=1.3e+02 Score=21.44 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=36.3
Q ss_pred EEEEEeccHHHHHHHHHHhCCCcccCceEEEeccccc-ccccccCCCCCCCHHHHHHHHHhhCC
Q 011105 163 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK-HRLFIGNVPRNWGEDDMRKAVTKIGP 225 (493)
Q Consensus 163 ~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~~-~~l~v~~l~~~~~~~~l~~~f~~~g~ 225 (493)
+.+|.|.+..+|.+|-+.|...-+..+.+-+-..... +.+.+. ++ .-+.+.+..+++..+-
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~-~~-~~d~~~i~~~l~~~~i 64 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALR-FE-PEDLEKIKEILEENGI 64 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEE-EC-hhhHHHHHHHHHHCCC
Confidence 6899999999999999988777665554433222111 111111 11 1345566667766663
No 286
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=37.21 E-value=4.8e+02 Score=26.85 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=7.4
Q ss_pred CceecCeEEE
Q 011105 357 KYEIDGQVLD 366 (493)
Q Consensus 357 ~~~~~g~~i~ 366 (493)
|....|+.|+
T Consensus 427 GLn~~Gqsir 436 (582)
T PF03276_consen 427 GLNARGQSIR 436 (582)
T ss_pred Cccccccccc
Confidence 5566788888
No 287
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=36.77 E-value=47 Score=32.11 Aligned_cols=67 Identities=13% Similarity=0.265 Sum_probs=46.6
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCc-EEEEEeCCCCCC--CCcccEEEEEeCCHHHHHHHHHhcCCcee
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGK-ITKVVIPPAKPG--QERSRYGFVHFAERSSAMKALKNTEKYEI 360 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~-v~~v~i~~~~~~--~~~~g~~fV~f~~~~~a~~a~~~l~~~~~ 360 (493)
..|.|.+||..++..+|.+....|-. |....+.....+ ....+.+||.|...++...-...++|++|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 78999999999999999888777643 333344322211 11146899999999997777776777655
No 288
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=35.86 E-value=1.2e+02 Score=30.56 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=25.1
Q ss_pred HhhHHhhhcCCCCCCeEEEcCCCCCCCHHHHHHHhhcc
Q 011105 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143 (493)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~f~~~ 143 (493)
.++..+....-....-||++. |..+++++...|+..+
T Consensus 323 V~kT~wdWel~NdvKpIW~R~-p~eV~EdEYt~FYkSl 359 (785)
T KOG0020|consen 323 VEKTVWDWELLNDVKPIWLRK-PKEVTEDEYTKFYKSL 359 (785)
T ss_pred hhhcchhhhhhcccchhhccC-chhcchHHHHHHHHhh
Confidence 334444444455556677775 8899999999888765
No 289
>PHA03169 hypothetical protein; Provisional
Probab=35.57 E-value=46 Score=31.90 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=6.6
Q ss_pred EEEeCCHHHHHHHHH
Q 011105 339 FVHFAERSSAMKALK 353 (493)
Q Consensus 339 fV~f~~~~~a~~a~~ 353 (493)
+|.+.+...|++.|+
T Consensus 370 tVyCqsk~TaK~V~k 384 (413)
T PHA03169 370 TVFCQSRGTAKAVIK 384 (413)
T ss_pred EEEecCcccHHHHHH
Confidence 344444444444443
No 290
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=35.49 E-value=1.9e+02 Score=28.92 Aligned_cols=7 Identities=29% Similarity=0.553 Sum_probs=4.7
Q ss_pred CCHHHHH
Q 011105 131 ASDDDLR 137 (493)
Q Consensus 131 ~te~~l~ 137 (493)
+.++||.
T Consensus 220 ldeEDlY 226 (654)
T COG5180 220 LDEEDLY 226 (654)
T ss_pred cchhhhh
Confidence 6677765
No 291
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=35.48 E-value=2.6e+02 Score=26.68 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=7.0
Q ss_pred HHHHHHHhhccCCee
Q 011105 133 DDDLRHFCKSIGEVT 147 (493)
Q Consensus 133 e~~l~~~f~~~G~v~ 147 (493)
|..|...|..-+.|+
T Consensus 101 E~kLn~AF~~s~~Vi 115 (441)
T KOG1902|consen 101 EKKLNLAFRSSRSVI 115 (441)
T ss_pred HHHHHHHHhhcCcEE
Confidence 344555555444443
No 292
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=35.03 E-value=29 Score=31.01 Aligned_cols=13 Identities=15% Similarity=-0.076 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhCC
Q 011105 171 KELASQAIEELNS 183 (493)
Q Consensus 171 ~e~A~~Al~~l~~ 183 (493)
-....+||....+
T Consensus 152 W~Em~~Ais~atg 164 (217)
T PF07423_consen 152 WNEMLKAISYATG 164 (217)
T ss_pred HHHHHHHHHHhhC
Confidence 3455566654444
No 293
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=34.37 E-value=34 Score=30.56 Aligned_cols=36 Identities=19% Similarity=0.453 Sum_probs=30.0
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEE
Q 011105 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEV 149 (493)
Q Consensus 114 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v 149 (493)
.......+||+-|||..+|++-|..+.+++|-+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 345567899999999999999999999999865543
No 294
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=33.02 E-value=20 Score=34.72 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=48.5
Q ss_pred ceEEEccCCCCCCH--------HHHHHHHhc--CCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHH
Q 011105 294 KALYVKNLPKDITQ--------DRLKELFAH--HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353 (493)
Q Consensus 294 ~~l~v~nl~~~~t~--------~~l~~~f~~--~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~ 353 (493)
+.+|+.+.....+. +++...|.. ++.+..|+..++.....++|..|++|.....|.+.+.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 56677776655444 489999998 6788899988888677778999999999999999874
No 295
>KOG3168 consensus U1 snRNP component [Transcription]
Probab=32.46 E-value=3.1e+02 Score=23.19 Aligned_cols=26 Identities=8% Similarity=0.045 Sum_probs=10.5
Q ss_pred ceEEEccCC-CCCCHHHHHHHHhcCCc
Q 011105 294 KALYVKNLP-KDITQDRLKELFAHHGK 319 (493)
Q Consensus 294 ~~l~v~nl~-~~~t~~~l~~~f~~~G~ 319 (493)
.+.||+.+- ++---+-+..-|+.|-.
T Consensus 24 gr~~ig~~~afDkhmNlvl~dceE~r~ 50 (177)
T KOG3168|consen 24 GRTFIGQFKAFDKHMNLVLQDCEEFRK 50 (177)
T ss_pred CceeechhhhhHHHHHHHHHHHHHHhc
Confidence 345555442 22222334444444433
No 296
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=31.93 E-value=69 Score=27.42 Aligned_cols=71 Identities=18% Similarity=0.089 Sum_probs=42.8
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCC-CCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG-QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 369 (493)
+++|.. +.....++|.++-+ |.+..|...+.... ...+|-.||+|.+.+.|.+.+.. +.....-+.|...+
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKRSG 183 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHHHH
Confidence 556665 22223344444444 78888877655433 23478999999999999887764 44444444444333
No 297
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=31.49 E-value=54 Score=30.49 Aligned_cols=9 Identities=22% Similarity=0.257 Sum_probs=3.5
Q ss_pred CCCCCCHHH
Q 011105 301 LPKDITQDR 309 (493)
Q Consensus 301 l~~~~t~~~ 309 (493)
|-..+|+..
T Consensus 120 LEg~ltD~~ 128 (271)
T COG1512 120 LEGVLTDAQ 128 (271)
T ss_pred cccccChHH
Confidence 333344433
No 298
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=29.78 E-value=79 Score=33.47 Aligned_cols=18 Identities=6% Similarity=0.324 Sum_probs=11.7
Q ss_pred CCCC----CCHHHHHHHhhccC
Q 011105 127 IPHD----ASDDDLRHFCKSIG 144 (493)
Q Consensus 127 Lp~~----~te~~l~~~f~~~G 144 (493)
||+. .+-++|..+++.+-
T Consensus 388 lpfti~~Pk~yeef~~Ll~k~s 409 (823)
T KOG2147|consen 388 LPFTIECPKNYEEFLALLEKLS 409 (823)
T ss_pred CCeeecCCcCHHHHHHHHHccC
Confidence 5554 36777888777654
No 299
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.78 E-value=11 Score=36.76 Aligned_cols=77 Identities=5% Similarity=-0.113 Sum_probs=58.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
.+.||..||...++.++.-+|..||.|..+.+.+..+.+...-.+||+-.+ ..|..||..+.-..+.+..++|..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 456888999999999999999999999988887776667777788887654 45566666565566667666665543
No 300
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=29.78 E-value=1.1e+02 Score=24.09 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=28.7
Q ss_pred CCCCCCHHHHHHHHhc---CCcEEEEEeCCCCCCCCcccEEEEEeCCHH
Q 011105 301 LPKDITQDRLKELFAH---HGKITKVVIPPAKPGQERSRYGFVHFAERS 346 (493)
Q Consensus 301 l~~~~t~~~l~~~f~~---~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~ 346 (493)
-|+.+|-.+|+++|+. |--|.+-.+.++---.-+-..||+.|....
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQ 130 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccch
Confidence 3667899999999984 444544444444322222348888886643
No 301
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=29.35 E-value=1.6e+02 Score=21.69 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=25.2
Q ss_pred cEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCce
Q 011105 319 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359 (493)
Q Consensus 319 ~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~ 359 (493)
.|.++..+.+- +||.||+=.+..++..|+..+.+..
T Consensus 33 ~I~Si~~~~~l-----kGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDSL-----KGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TTS-----TSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCCC-----ceEEEEEeCCHHHHHHHHhccccee
Confidence 46666665543 7999999999999999998776543
No 302
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=29.15 E-value=62 Score=23.12 Aligned_cols=27 Identities=33% Similarity=0.351 Sum_probs=22.0
Q ss_pred EEEEEeCCHHHHHHHHHhcCCceecCe
Q 011105 337 YGFVHFAERSSAMKALKNTEKYEIDGQ 363 (493)
Q Consensus 337 ~~fV~f~~~~~a~~a~~~l~~~~~~g~ 363 (493)
+.+|.|.|..+|.+|-+.|....+..+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 689999999999999998776655444
No 303
>PF11532 HnRNP_M: Heterogeneous nuclear ribonucleoprotein M; InterPro: IPR024666 Heterogeneous nuclear ribonucleoproteins (hnRNPs) bind directly to nascent RNA polymerase II transcripts and play an important role in both transcript-specific packaging and alternative splicing of pre-mRNAs []. hnRNP M proteins are an abundant group of hnRNPs that have been shown to bind avidly to poly(G) and poly(U) RNA homopolymers []. hnRNP M family members are able to induce exon skipping and promote exon inclusion, suggesting that the proteins may broadly contribute to the fidelity of splice site recognition and alternative splicing regulation []. This entry represents the N-terminal PY nuclear localisation signal of heterogeneous nuclear ribonucleoprotein M [].; PDB: 2OT8_C.
Probab=29.05 E-value=21 Score=20.20 Aligned_cols=8 Identities=50% Similarity=1.356 Sum_probs=1.2
Q ss_pred CCCCCCCC
Q 011105 486 GRSRYNPY 493 (493)
Q Consensus 486 g~~~~~~y 493 (493)
|++||-||
T Consensus 17 gg~rfEPY 24 (30)
T PF11532_consen 17 GGNRFEPY 24 (30)
T ss_dssp ------SS
T ss_pred CCcccccc
Confidence 44456665
No 304
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=28.19 E-value=1.9e+02 Score=21.54 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=39.7
Q ss_pred EEEccCCCCCCHHHHHHHHhc-CC-cEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHh
Q 011105 296 LYVKNLPKDITQDRLKELFAH-HG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354 (493)
Q Consensus 296 l~v~nl~~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 354 (493)
-|+--++..++..+|++.++. |+ .|..|..+.-+.+. --|||++.....|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~---KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE---KKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc---EEEEEEeCCCCcHHHHHHh
Confidence 444556678899999999986 55 46677666555322 3799999998888776554
No 305
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=27.34 E-value=66 Score=38.28 Aligned_cols=20 Identities=15% Similarity=0.014 Sum_probs=11.0
Q ss_pred cEEEEEeCCHHHHHHHHHhc
Q 011105 336 RYGFVHFAERSSAMKALKNT 355 (493)
Q Consensus 336 g~~fV~f~~~~~a~~a~~~l 355 (493)
|...+-|++..-+.+|+..|
T Consensus 4409 ~~~~la~etl~lvtkals~l 4428 (4600)
T COG5271 4409 GSTVLALETLALVTKALSLL 4428 (4600)
T ss_pred CceeeehHHHHHHHHHHHHH
Confidence 34445555555556665544
No 306
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=27.18 E-value=4.4 Score=41.80 Aligned_cols=35 Identities=14% Similarity=0.376 Sum_probs=20.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcc----C-CeeEEEEeeC
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSI----G-EVTEVRIMKG 154 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~----G-~v~~v~i~~~ 154 (493)
..-||.++ |..+|+++..+||..+ . ++..+++..+
T Consensus 92 ~~piW~r~-~~eit~eey~~Fyk~l~~~~~~Pl~~iH~~~e 131 (531)
T PF00183_consen 92 QKPIWTRD-PKEITDEEYKEFYKSLSKDYDDPLFWIHFNAE 131 (531)
T ss_dssp -S-GGGSS-GGGS-HHHHHHHHHHHHTTSS-ESEEEEEEEE
T ss_pred cCcccccc-hhccchHHHHHHHHHhhhcccCchhheecccc
Confidence 34466666 6789999988887643 2 3444554444
No 307
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=26.48 E-value=2.3e+02 Score=20.64 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=39.2
Q ss_pred eEEEccCCCCCCHHHHHHHHhc-CC-cEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHH
Q 011105 295 ALYVKNLPKDITQDRLKELFAH-HG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353 (493)
Q Consensus 295 ~l~v~nl~~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~ 353 (493)
.-|+-.++..++..+|++.++. |+ .|..|..+.-+.. .--|||++.....|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~---~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG---EKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC---ceEEEEEECCCCcHHHHHH
Confidence 3456667788999999999886 55 4666665554432 2379999988887766544
No 308
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=26.36 E-value=26 Score=35.30 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=9.9
Q ss_pred cccccCCCCCCCHHHHHH
Q 011105 201 RLFIGNVPRNWGEDDMRK 218 (493)
Q Consensus 201 ~l~v~~l~~~~~~~~l~~ 218 (493)
+|.|++|+-...+..|+.
T Consensus 284 ~L~vGGL~lk~QE~~LRs 301 (691)
T KOG0338|consen 284 GLAVGGLDLKAQEAVLRS 301 (691)
T ss_pred eeeecCccHHHHHHHHhh
Confidence 566666665554444443
No 309
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=26.32 E-value=23 Score=40.22 Aligned_cols=33 Identities=12% Similarity=0.278 Sum_probs=20.6
Q ss_pred hhhcCCCCCCeEEEcCCCCCCCHHHH---HHHhhcc
Q 011105 111 ELLALPPHGSEVYLGGIPHDASDDDL---RHFCKSI 143 (493)
Q Consensus 111 ~~~~~~~~~~~l~V~nLp~~~te~~l---~~~f~~~ 143 (493)
......+.+..+||+-+.+.+.-.+| |++++.+
T Consensus 1449 rlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerA 1484 (1710)
T KOG1070|consen 1449 RLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERA 1484 (1710)
T ss_pred HHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 33444667778888887777665555 3455544
No 310
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=26.15 E-value=30 Score=32.48 Aligned_cols=7 Identities=0% Similarity=0.036 Sum_probs=3.8
Q ss_pred CeEEEcC
Q 011105 120 SEVYLGG 126 (493)
Q Consensus 120 ~~l~V~n 126 (493)
..+|..+
T Consensus 85 ~~~F~~~ 91 (285)
T PF03896_consen 85 TILFPKP 91 (285)
T ss_pred EEEeccc
Confidence 3555555
No 311
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=26.10 E-value=53 Score=29.45 Aligned_cols=32 Identities=22% Similarity=0.485 Sum_probs=27.7
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEE
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVV 324 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~ 324 (493)
..+||+-|+|..+|++.|..+.+.+|.+..+.
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 38999999999999999999999998655443
No 312
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=25.46 E-value=1.4e+02 Score=28.62 Aligned_cols=57 Identities=21% Similarity=0.245 Sum_probs=39.6
Q ss_pred EEEeeCCHHHHHHHHHHcCCCCcccCCCCCeeeecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhc
Q 011105 246 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAH 316 (493)
Q Consensus 246 ~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~ 316 (493)
|||+|++..+|..+.+.+.... .....+..+..+ +.|.-.||........+|.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~----~~~~~v~~APeP----------~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR----PNSWRVSPAPEP----------DDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC----CCCceEeeCCCc----------ccccccccCCChHHHHHHHHHHH
Confidence 6999999999999998654422 233455544443 66888999777777777766644
No 313
>PRK11901 hypothetical protein; Reviewed
Probab=25.13 E-value=2.2e+02 Score=27.17 Aligned_cols=67 Identities=19% Similarity=0.327 Sum_probs=42.8
Q ss_pred hcCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEE--EeccHHHHHHHHHHhCCC
Q 011105 113 LALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFV--TFRTKELASQAIEELNSC 184 (493)
Q Consensus 113 ~~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV--~F~~~e~A~~Al~~l~~~ 184 (493)
...+....+|-|-.+ ..++.|..|..+++ +..++++.....|+. .|..| .|.+.++|+.|+..|...
T Consensus 239 ~s~p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 239 SSAPASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred hcCCCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHH
Confidence 334555566666664 45788888888875 344555554332322 24333 689999999999987654
No 314
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=24.64 E-value=27 Score=31.12 Aligned_cols=11 Identities=18% Similarity=0.259 Sum_probs=2.7
Q ss_pred hcCCceecCeE
Q 011105 354 NTEKYEIDGQV 364 (493)
Q Consensus 354 ~l~~~~~~g~~ 364 (493)
.+|++.++-+.
T Consensus 114 ~fnnY~~Dp~r 124 (214)
T PF04959_consen 114 YFNNYLLDPKR 124 (214)
T ss_dssp HHHHH------
T ss_pred HHHHHhcCccc
Confidence 45555554433
No 315
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.99 E-value=82 Score=32.77 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=27.7
Q ss_pred HHHHHHhhccCCeeEEEEeeCCC-CCCcceEE-EEEeccHHHHHHHHHHhCCCc---ccCceEEE
Q 011105 134 DDLRHFCKSIGEVTEVRIMKGKD-SGEAKGYA-FVTFRTKELASQAIEELNSCE---LKGKKIKC 193 (493)
Q Consensus 134 ~~l~~~f~~~G~v~~v~i~~~~~-~g~~~g~a-fV~F~~~e~A~~Al~~l~~~~---i~g~~i~V 193 (493)
...+.-|++|--+.+++-..-.. .....-|+ .+.|.+...+++-+-.-...+ +.|..|+|
T Consensus 465 ~~ArerfqkYRGLksl~Ts~Wd~~En~P~dy~rlfqF~Nyrntkk~i~kk~~~e~~~~~G~~V~v 529 (754)
T KOG1980|consen 465 ESARERFQKYRGLKSLRTSPWDAKENLPADYARLFQFQNYRNTKKRILKKEDNEAEAIPGQYVRV 529 (754)
T ss_pred hHHHHHHHHhccccccccCCCcccccCcHHHHHHHhhhhhhhHHHHhhhhcccccccCCCceEEE
Confidence 34667788876666654332211 01111222 345666665555442211112 45666655
No 316
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=23.83 E-value=36 Score=32.98 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=50.0
Q ss_pred CCCeEEEcCCCCCCCHH--------HHHHHhhc--cCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHH
Q 011105 118 HGSEVYLGGIPHDASDD--------DLRHFCKS--IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~--------~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~ 179 (493)
..+.+|+.+.....+.. ++..+|.. ++.+..+...++.....++|..|++|+....|++++.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34678888887766555 89999988 6778888887777557889999999999999999864
No 317
>KOG2567 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.98 E-value=2.2e+02 Score=24.02 Aligned_cols=7 Identities=0% Similarity=0.226 Sum_probs=2.8
Q ss_pred eCCHHHH
Q 011105 342 FAERSSA 348 (493)
Q Consensus 342 f~~~~~a 348 (493)
|.+.++.
T Consensus 82 ~~sv~d~ 88 (179)
T KOG2567|consen 82 YTSVEDV 88 (179)
T ss_pred eeehhhc
Confidence 3343443
No 318
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=22.58 E-value=1.4e+02 Score=27.39 Aligned_cols=69 Identities=23% Similarity=0.431 Sum_probs=41.1
Q ss_pred CCHHHHHHHHhcCCcEEEEEeCCCC-----CCCCcc-----cEE---------EEEeCCHHHHHHHHHhcCCcee----c
Q 011105 305 ITQDRLKELFAHHGKITKVVIPPAK-----PGQERS-----RYG---------FVHFAERSSAMKALKNTEKYEI----D 361 (493)
Q Consensus 305 ~t~~~l~~~f~~~G~v~~v~i~~~~-----~~~~~~-----g~~---------fV~f~~~~~a~~a~~~l~~~~~----~ 361 (493)
.+++.|+..|+.||.|..|.|+.-. .+++.. ||+ ||.|...---..|+.+|.|..+ .
T Consensus 173 pse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~akk~d 252 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLAKKGD 252 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHHhhcC
Confidence 3578899999999999998886522 223222 333 3444444444566666666544 2
Q ss_pred Ce----EEEEEecCCC
Q 011105 362 GQ----VLDCSLAKPQ 373 (493)
Q Consensus 362 g~----~i~v~~a~~~ 373 (493)
++ .++|.|...+
T Consensus 253 ~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 253 DGFFQANVKVDFDRSR 268 (445)
T ss_pred Ccccccccccccchhh
Confidence 22 4666665554
No 319
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=22.32 E-value=2.7e+02 Score=19.07 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=33.2
Q ss_pred CHHHHHHHHhcCC-cEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCce
Q 011105 306 TQDRLKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359 (493)
Q Consensus 306 t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~ 359 (493)
.-.+|-++|.+.| .|.++.+..... +++..|.+.+.+.|.++|.. +|+.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~----~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE----FGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC----CCEEEEEECCHHHHHHHHHH-CCCE
Confidence 3467888888776 477877655432 35666777887788888875 5543
No 320
>KOG4156 consensus Claspin, protein mediating phosphorylation and activation of Chk1 protein kinase in the DNA replication checkpoint response [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=21.88 E-value=33 Score=35.30 Aligned_cols=59 Identities=41% Similarity=0.403 Sum_probs=0.0
Q ss_pred CCCCCcchhhhccccCCcccchhhhhhcccccccccchhhhhhhhcc-------cccccccccccc
Q 011105 23 REKPIESEERVDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEE-------VEEEEETEDVVD 81 (493)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~e~~e~~~~~e~~~e~~~~~e~e~~~e-------~~~~~e~~~~~~ 81 (493)
...++++++.+...+.+.++.-++++.+.+.+++++.+++++++..+ ..++.+..|+..
T Consensus 629 e~eeEEEEE~t~~see~Gee~VekEE~eeE~eEe~E~Eee~EEe~nqetaefllssee~~t~DE~e 694 (1329)
T KOG4156|consen 629 EEEEEEEEEMTDESEEDGEEKVEKEEKEEELEEEEEKEEEEEEEGNQETAEFLLSSEEIETKDEKE 694 (1329)
T ss_pred cccchhhhhhhhhhhhccccccchhhhhhhhhhhhccccccccccchhhHhhhhccccccccchhh
No 321
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=21.66 E-value=2.5e+02 Score=21.63 Aligned_cols=47 Identities=28% Similarity=0.400 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHh-hccCCeeEEEEeeCCC----CCCcceEEEEEeccHHHHHH
Q 011105 129 HDASDDDLRHFC-KSIGEVTEVRIMKGKD----SGEAKGYAFVTFRTKELASQ 176 (493)
Q Consensus 129 ~~~te~~l~~~f-~~~G~v~~v~i~~~~~----~g~~~g~afV~F~~~e~A~~ 176 (493)
.+.+..+|++-+ +.|+.=.+..++..-. .+.+.|||.| |.+.+.|++
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 366777887655 4455433333433322 2566677766 666666655
No 322
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=21.26 E-value=1.5e+02 Score=33.23 Aligned_cols=25 Identities=4% Similarity=-0.186 Sum_probs=16.0
Q ss_pred cccccCCCCCCCHHHHHHHHHhhCC
Q 011105 201 RLFIGNVPRNWGEDDMRKAVTKIGP 225 (493)
Q Consensus 201 ~l~v~~l~~~~~~~~l~~~f~~~g~ 225 (493)
+|.+.-|..-+-.+-|+.+|...+.
T Consensus 264 nI~l~liD~lTWPevLrqY~ea~~~ 288 (1414)
T KOG1473|consen 264 NIDLYLIDTLTWPEVLRQYFEADKH 288 (1414)
T ss_pred eeeeehhccccHHHHHHHHHHhccc
Confidence 4445555555666777888877653
No 323
>PF12782 Innate_immun: Invertebrate innate immunity transcript family
Probab=20.91 E-value=4.9e+02 Score=22.81 Aligned_cols=6 Identities=33% Similarity=0.274 Sum_probs=2.3
Q ss_pred HHHHHH
Q 011105 348 AMKALK 353 (493)
Q Consensus 348 a~~a~~ 353 (493)
|..||.
T Consensus 13 aalais 18 (311)
T PF12782_consen 13 AALAIS 18 (311)
T ss_pred HHHHHH
Confidence 333443
No 324
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=20.33 E-value=31 Score=36.12 Aligned_cols=10 Identities=20% Similarity=0.202 Sum_probs=4.6
Q ss_pred HHHHHHHHHh
Q 011105 345 RSSAMKALKN 354 (493)
Q Consensus 345 ~~~a~~a~~~ 354 (493)
..+|..+|..
T Consensus 516 I~eah~~L~e 525 (595)
T PF05470_consen 516 IKEAHQCLSE 525 (595)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 325
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.16 E-value=1.9e+02 Score=29.76 Aligned_cols=62 Identities=16% Similarity=0.216 Sum_probs=46.5
Q ss_pred CeEEEcCCCCCC---CHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceE
Q 011105 120 SEVYLGGIPHDA---SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (493)
Q Consensus 120 ~~l~V~nLp~~~---te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i 191 (493)
.-=+|+||+.-. ....|.++-++||+|..+++=.. -.|...+.+.|+.|+. .++..+.+|..
T Consensus 33 ~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 33 PLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred CCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 445778887543 33556677779999998887332 3678899999999998 67888888885
Done!