Query 011105
Match_columns 493
No_of_seqs 456 out of 3819
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 20:55:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011105.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011105hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 1.9E-43 6.5E-48 336.1 27.4 252 112-373 34-291 (292)
2 3smz_A Protein raver-1, ribonu 100.0 1.8E-43 6.1E-48 334.9 26.1 248 116-376 19-267 (284)
3 4f02_A Polyadenylate-binding p 100.0 2.3E-35 7.8E-40 266.3 16.2 172 117-376 13-184 (213)
4 1l3k_A Heterogeneous nuclear r 100.0 2.9E-33 9.9E-38 249.8 20.1 180 115-378 9-188 (196)
5 3md3_A Nuclear and cytoplasmic 100.0 4.5E-33 1.5E-37 241.6 19.8 166 120-372 1-166 (166)
6 2qfj_A FBP-interacting repress 100.0 1.5E-32 5E-37 249.2 22.4 182 118-376 27-208 (216)
7 1b7f_A Protein (SXL-lethal pro 100.0 1.1E-32 3.7E-37 239.7 18.4 165 118-370 2-168 (168)
8 1fxl_A Paraneoplastic encephal 100.0 2.5E-32 8.5E-37 237.1 20.2 164 119-370 2-167 (167)
9 2cjk_A Nuclear polyadenylated 100.0 5.5E-33 1.9E-37 241.3 15.1 165 118-373 2-166 (167)
10 3nmr_A Cugbp ELAV-like family 100.0 1.7E-31 6E-36 233.7 19.2 166 118-371 2-175 (175)
11 1fje_B Nucleolin RBD12, protei 100.0 1.8E-31 6.2E-36 233.5 12.7 166 115-373 9-174 (175)
12 2yh0_A Splicing factor U2AF 65 100.0 1.8E-30 6.3E-35 232.0 19.1 183 118-375 3-196 (198)
13 2g4b_A Splicing factor U2AF 65 100.0 1.2E-30 4E-35 227.7 17.2 159 118-371 3-172 (172)
14 3tyt_A Heterogeneous nuclear r 100.0 6E-30 2.1E-34 228.0 17.0 195 118-370 3-204 (205)
15 3pgw_A U1-A; protein-RNA compl 100.0 5.7E-29 2E-33 235.0 24.6 246 116-371 6-281 (282)
16 2adc_A Polypyrimidine tract-bi 100.0 9.4E-29 3.2E-33 225.6 22.7 194 116-373 31-228 (229)
17 1qm9_A Polypyrimidine tract-bi 100.0 8.8E-29 3E-33 220.9 17.6 193 118-373 2-197 (198)
18 3sde_A Paraspeckle component 1 100.0 6.4E-29 2.2E-33 231.3 16.7 160 116-376 19-182 (261)
19 3smz_A Protein raver-1, ribonu 99.9 3.3E-25 1.1E-29 209.4 18.4 165 116-285 92-266 (284)
20 2ghp_A U4/U6 snRNA-associated 99.9 1E-24 3.6E-29 206.8 14.9 162 117-283 115-291 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 2.4E-22 8.4E-27 171.9 18.2 84 293-376 70-153 (158)
22 4f25_A Polyadenylate-binding p 99.8 3.3E-21 1.1E-25 154.9 9.6 97 117-215 3-113 (115)
23 4fxv_A ELAV-like protein 1; RN 99.8 5.8E-21 2E-25 148.7 10.5 80 293-372 19-98 (99)
24 2i2y_A Fusion protein consists 99.8 2.5E-20 8.5E-25 157.8 13.9 139 158-374 10-149 (150)
25 4fxv_A ELAV-like protein 1; RN 99.8 1.5E-20 5.2E-25 146.3 11.2 83 116-198 16-98 (99)
26 3pgw_S U1-70K; protein-RNA com 99.8 6.5E-21 2.2E-25 188.4 9.6 85 291-375 100-184 (437)
27 3q2s_C Cleavage and polyadenyl 99.8 1.3E-21 4.5E-26 176.8 4.1 81 294-374 69-151 (229)
28 2lxi_A RNA-binding protein 10; 99.8 1.6E-20 5.5E-25 143.9 8.2 83 294-376 2-86 (91)
29 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.6E-19 5.4E-24 153.9 11.2 85 292-376 38-122 (156)
30 1whw_A Hypothetical protein ri 99.8 6.3E-19 2.2E-23 137.8 13.6 85 293-377 8-92 (99)
31 2lkz_A RNA-binding protein 5; 99.8 6.8E-20 2.3E-24 140.8 7.8 80 293-372 9-94 (95)
32 3s8s_A Histone-lysine N-methyl 99.8 2.6E-19 8.8E-24 142.1 10.9 84 116-199 3-86 (110)
33 3s8s_A Histone-lysine N-methyl 99.8 2.6E-19 8.9E-24 142.0 10.8 83 293-375 6-88 (110)
34 2dnz_A Probable RNA-binding pr 99.8 6.1E-19 2.1E-23 136.8 11.8 84 293-376 5-88 (95)
35 2lea_A Serine/arginine-rich sp 99.8 1.4E-19 4.8E-24 149.5 8.6 126 245-377 6-131 (135)
36 2dgs_A DAZ-associated protein 99.8 9.3E-19 3.2E-23 136.8 12.2 85 292-377 9-93 (99)
37 2dgo_A Cytotoxic granule-assoc 99.8 1.9E-18 6.6E-23 139.0 14.4 87 291-377 13-99 (115)
38 1x5u_A Splicing factor 3B subu 99.8 1.1E-18 3.8E-23 138.0 12.6 87 291-377 13-99 (105)
39 2lxi_A RNA-binding protein 10; 99.8 7.9E-20 2.7E-24 140.0 5.5 83 119-201 1-85 (91)
40 2cqb_A Peptidyl-prolyl CIS-tra 99.8 8.1E-19 2.8E-23 138.0 11.5 86 292-377 11-96 (102)
41 1x5t_A Splicing factor 3B subu 99.8 7.8E-19 2.7E-23 136.5 11.1 84 293-376 5-89 (96)
42 2cqd_A RNA-binding region cont 99.8 3.3E-18 1.1E-22 137.9 14.9 85 291-376 15-99 (116)
43 3md1_A Nuclear and cytoplasmic 99.8 9.4E-19 3.2E-23 132.0 10.8 81 294-374 2-82 (83)
44 2dnm_A SRP46 splicing factor; 99.8 1E-18 3.4E-23 137.7 10.9 85 292-376 12-96 (103)
45 1x4h_A RNA-binding protein 28; 99.8 2.5E-18 8.5E-23 137.5 13.3 87 291-377 13-105 (111)
46 2lkz_A RNA-binding protein 5; 99.8 2E-19 6.7E-24 138.2 6.6 81 118-198 8-94 (95)
47 2cq0_A Eukaryotic translation 99.8 1.1E-18 3.8E-23 137.5 11.0 86 292-377 14-99 (103)
48 2cph_A RNA binding motif prote 99.8 2.3E-18 7.9E-23 136.7 12.8 87 291-377 13-101 (107)
49 1x5s_A Cold-inducible RNA-bind 99.8 8.5E-19 2.9E-23 137.9 10.1 86 292-377 11-96 (102)
50 2fy1_A RNA-binding motif prote 99.8 2.2E-18 7.6E-23 138.4 12.6 83 293-376 7-89 (116)
51 2cpz_A CUG triplet repeat RNA- 99.8 1.3E-18 4.4E-23 140.0 11.2 86 292-377 24-109 (115)
52 3bs9_A Nucleolysin TIA-1 isofo 99.8 1E-18 3.5E-23 133.1 10.1 81 293-373 6-86 (87)
53 1rk8_A CG8781-PA, CG8781-PA pr 99.8 7.7E-19 2.6E-23 150.9 10.2 130 248-377 11-156 (165)
54 1u6f_A Tcubp1, RNA-binding pro 99.8 2E-18 6.9E-23 144.0 12.4 88 289-376 38-125 (139)
55 2x1f_A MRNA 3'-END-processing 99.8 2.4E-18 8.1E-23 133.6 11.8 82 294-375 3-84 (96)
56 2do4_A Squamous cell carcinoma 99.8 2.5E-18 8.4E-23 134.7 11.5 83 292-375 16-98 (100)
57 1wi8_A EIF-4B, eukaryotic tran 99.8 3.6E-18 1.2E-22 134.7 12.5 84 292-377 14-98 (104)
58 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.7E-18 5.7E-23 131.3 10.1 79 293-371 7-85 (85)
59 2cpf_A RNA binding motif prote 99.8 1.6E-18 5.3E-23 135.3 10.1 85 293-377 5-92 (98)
60 2cqc_A Arginine/serine-rich sp 99.8 2.7E-18 9.4E-23 133.1 11.4 82 291-372 13-94 (95)
61 4f25_A Polyadenylate-binding p 99.8 1.2E-18 4.2E-23 139.8 9.6 81 294-376 6-86 (115)
62 3lqv_A PRE-mRNA branch site pr 99.8 1.6E-18 5.4E-23 139.6 10.2 105 116-225 5-109 (115)
63 2e5h_A Zinc finger CCHC-type a 99.8 3.7E-18 1.3E-22 132.0 11.9 80 292-371 15-94 (94)
64 2dgp_A Bruno-like 4, RNA bindi 99.8 2.5E-18 8.6E-23 136.2 11.1 87 291-377 11-100 (106)
65 2dnz_A Probable RNA-binding pr 99.8 2.9E-18 9.8E-23 133.0 11.2 85 116-200 2-86 (95)
66 2dng_A Eukaryotic translation 99.8 3.5E-18 1.2E-22 134.6 11.8 84 292-377 14-97 (103)
67 3ns6_A Eukaryotic translation 99.8 5.2E-19 1.8E-23 138.2 6.8 82 293-374 6-94 (100)
68 2d9p_A Polyadenylate-binding p 99.8 2.2E-18 7.5E-23 135.8 10.3 86 291-378 13-98 (103)
69 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.6E-18 8.8E-23 130.9 10.3 83 117-199 4-86 (87)
70 2dgx_A KIAA0430 protein; RRM d 99.8 4.7E-18 1.6E-22 131.8 11.9 81 293-376 9-93 (96)
71 2cqi_A Nucleolysin TIAR; RNA r 99.8 8E-18 2.8E-22 132.5 13.4 84 292-377 14-97 (103)
72 2cpe_A RNA-binding protein EWS 99.8 3.1E-18 1E-22 137.4 11.2 85 292-376 14-106 (113)
73 3md1_A Nuclear and cytoplasmic 99.8 3.1E-18 1.1E-22 129.1 10.4 81 119-199 1-81 (83)
74 1oo0_B CG8781-PA, drosophila Y 99.8 4E-18 1.4E-22 136.0 11.4 84 292-375 25-108 (110)
75 3ex7_B RNA-binding protein 8A; 99.8 2.4E-18 8.3E-23 140.9 10.4 85 292-376 21-105 (126)
76 2cq3_A RNA-binding protein 9; 99.8 9E-18 3.1E-22 132.2 13.3 85 291-377 13-97 (103)
77 3p5t_L Cleavage and polyadenyl 99.8 3.3E-19 1.1E-23 136.6 4.8 83 294-376 2-86 (90)
78 3p5t_L Cleavage and polyadenyl 99.8 1.2E-18 4.1E-23 133.4 7.6 80 120-199 2-83 (90)
79 2wbr_A GW182, gawky, LD47780P; 99.8 3E-18 1E-22 126.0 9.2 73 293-371 7-79 (89)
80 2dnh_A Bruno-like 5, RNA bindi 99.8 4.6E-18 1.6E-22 134.4 11.1 85 292-377 14-101 (105)
81 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.8E-18 9.4E-23 130.1 9.4 82 116-197 4-85 (85)
82 3q2s_C Cleavage and polyadenyl 99.8 1.2E-18 4.1E-23 157.4 8.7 83 118-200 67-151 (229)
83 1sjq_A Polypyrimidine tract-bi 99.8 2.9E-18 9.8E-23 132.8 9.5 79 293-377 16-96 (105)
84 1whw_A Hypothetical protein ri 99.8 3.9E-18 1.3E-22 133.3 10.4 86 116-201 5-90 (99)
85 1x4b_A Heterogeneous nuclear r 99.8 4.7E-18 1.6E-22 137.0 11.0 86 290-376 24-109 (116)
86 1p27_B RNA-binding protein 8A; 99.8 3.2E-18 1.1E-22 135.6 9.9 84 292-375 22-105 (106)
87 2x1f_A MRNA 3'-END-processing 99.8 2.3E-18 7.8E-23 133.7 8.7 84 119-202 2-85 (96)
88 2do0_A HnRNP M, heterogeneous 99.8 1.3E-17 4.3E-22 134.0 13.3 83 293-376 15-97 (114)
89 4a8x_A RNA-binding protein wit 99.7 3.4E-18 1.2E-22 130.5 9.3 83 293-375 4-87 (88)
90 2dgs_A DAZ-associated protein 99.7 6.4E-18 2.2E-22 132.0 11.0 84 116-200 7-90 (99)
91 2e5h_A Zinc finger CCHC-type a 99.7 4.4E-18 1.5E-22 131.6 9.9 82 116-197 13-94 (94)
92 2cqc_A Arginine/serine-rich sp 99.7 4.8E-18 1.6E-22 131.7 10.2 83 116-198 12-94 (95)
93 2dh8_A DAZ-associated protein 99.7 4E-18 1.4E-22 134.8 9.7 86 291-377 14-99 (105)
94 2dhg_A TRNA selenocysteine ass 99.7 3.6E-18 1.2E-22 134.8 9.4 84 293-377 9-94 (104)
95 2jrs_A RNA-binding protein 39; 99.7 3.6E-18 1.2E-22 135.3 9.4 83 292-374 25-107 (108)
96 3ns6_A Eukaryotic translation 99.7 9.4E-19 3.2E-23 136.7 5.8 83 118-200 5-94 (100)
97 1x5s_A Cold-inducible RNA-bind 99.7 4.3E-18 1.5E-22 133.8 9.7 85 116-200 9-93 (102)
98 2la6_A RNA-binding protein FUS 99.7 7E-18 2.4E-22 131.7 10.8 84 114-197 8-99 (99)
99 2cq4_A RNA binding motif prote 99.7 2.2E-18 7.7E-23 138.4 8.2 86 291-377 23-108 (114)
100 2do4_A Squamous cell carcinoma 99.7 8.5E-18 2.9E-22 131.6 11.3 83 116-199 14-96 (100)
101 1x5u_A Splicing factor 3B subu 99.7 5.7E-18 1.9E-22 133.9 10.4 87 115-201 11-97 (105)
102 1rk8_A CG8781-PA, CG8781-PA pr 99.7 5.2E-18 1.8E-22 145.7 10.8 84 116-199 69-152 (165)
103 2cq0_A Eukaryotic translation 99.7 4.1E-18 1.4E-22 134.2 9.3 85 116-200 12-96 (103)
104 2cpz_A CUG triplet repeat RNA- 99.7 5.3E-18 1.8E-22 136.4 10.2 85 116-200 22-106 (115)
105 3ucg_A Polyadenylate-binding p 99.7 7E-18 2.4E-22 129.1 10.3 79 294-373 7-85 (89)
106 3r27_A HnRNP L, heterogeneous 99.7 6.4E-18 2.2E-22 129.4 9.9 77 292-374 20-98 (100)
107 1x4a_A Splicing factor, argini 99.7 1.9E-17 6.6E-22 131.7 13.1 81 292-375 21-101 (109)
108 2dnm_A SRP46 splicing factor; 99.7 4E-18 1.4E-22 134.2 9.0 84 116-199 10-93 (103)
109 2jrs_A RNA-binding protein 39; 99.7 6.3E-18 2.2E-22 133.9 10.0 84 116-199 23-106 (108)
110 2div_A TRNA selenocysteine ass 99.7 3.9E-18 1.3E-22 133.3 8.8 84 292-375 8-96 (99)
111 1p27_B RNA-binding protein 8A; 99.7 8.8E-18 3E-22 133.0 10.8 84 116-199 20-103 (106)
112 1x5t_A Splicing factor 3B subu 99.7 3.6E-18 1.2E-22 132.7 8.4 84 117-200 3-87 (96)
113 2rs2_A Musashi-1, RNA-binding 99.7 1.3E-17 4.5E-22 132.3 11.7 84 292-376 24-107 (109)
114 2dgo_A Cytotoxic granule-assoc 99.7 9.1E-18 3.1E-22 135.1 10.9 85 116-200 12-96 (115)
115 2la6_A RNA-binding protein FUS 99.7 5.6E-18 1.9E-22 132.3 9.4 80 292-371 12-99 (99)
116 2dgu_A Heterogeneous nuclear r 99.7 2.6E-17 8.9E-22 129.5 13.3 78 292-377 10-87 (103)
117 2kxn_B Transformer-2 protein h 99.7 4.4E-18 1.5E-22 139.2 9.1 85 291-375 44-128 (129)
118 3s7r_A Heterogeneous nuclear r 99.7 1E-17 3.4E-22 127.5 10.5 81 115-196 7-87 (87)
119 1s79_A Lupus LA protein; RRM, 99.7 4.7E-18 1.6E-22 132.9 8.6 79 293-373 11-89 (103)
120 2kxn_B Transformer-2 protein h 99.7 7.6E-18 2.6E-22 137.8 10.2 85 115-199 42-126 (129)
121 1x4h_A RNA-binding protein 28; 99.7 9.9E-18 3.4E-22 134.0 10.7 86 115-200 11-102 (111)
122 2cpf_A RNA binding motif prote 99.7 5.8E-18 2E-22 132.0 9.1 84 117-200 3-89 (98)
123 1x4c_A Splicing factor, argini 99.7 2.9E-17 9.9E-22 130.3 13.2 78 292-376 14-96 (108)
124 2cqb_A Peptidyl-prolyl CIS-tra 99.7 4.1E-18 1.4E-22 133.9 8.0 85 116-200 9-93 (102)
125 1s79_A Lupus LA protein; RRM, 99.7 7.1E-18 2.4E-22 131.9 9.2 81 116-198 8-88 (103)
126 3n9u_C Cleavage and polyadenyl 99.7 6.4E-18 2.2E-22 142.8 9.5 82 293-374 55-138 (156)
127 2khc_A Testis-specific RNP-typ 99.7 1E-17 3.5E-22 135.4 10.4 81 291-371 38-118 (118)
128 2ywk_A Putative RNA-binding pr 99.7 9.9E-18 3.4E-22 129.9 9.9 80 292-372 15-94 (95)
129 2cqg_A TDP-43, TAR DNA-binding 99.7 2.9E-17 9.9E-22 129.3 12.6 83 292-376 14-96 (103)
130 2cph_A RNA binding motif prote 99.7 1.3E-17 4.5E-22 132.3 10.6 86 116-201 12-99 (107)
131 2cpi_A CCR4-NOT transcription 99.7 1.3E-17 4.4E-22 133.0 10.6 83 293-375 15-103 (111)
132 1x4d_A Matrin 3; structural ge 99.7 8.2E-18 2.8E-22 130.4 9.0 78 292-375 14-94 (102)
133 2dis_A Unnamed protein product 99.7 2.2E-17 7.6E-22 131.4 11.8 84 293-376 8-95 (109)
134 2dgv_A HnRNP M, heterogeneous 99.7 9.4E-18 3.2E-22 129.2 9.2 82 293-376 8-89 (92)
135 2m2b_A RNA-binding protein 10; 99.7 6.4E-18 2.2E-22 139.1 8.8 85 291-376 21-111 (131)
136 2wbr_A GW182, gawky, LD47780P; 99.7 9.8E-18 3.4E-22 123.2 8.7 74 118-197 6-79 (89)
137 2kt5_A RNA and export factor-b 99.7 4.2E-17 1.4E-21 133.0 13.5 87 289-376 31-117 (124)
138 2d9p_A Polyadenylate-binding p 99.7 1.7E-17 5.8E-22 130.6 10.7 83 116-200 12-94 (103)
139 2dnh_A Bruno-like 5, RNA bindi 99.7 2.3E-17 7.8E-22 130.4 11.4 83 117-200 13-98 (105)
140 1sjq_A Polypyrimidine tract-bi 99.7 9.2E-18 3.2E-22 129.9 8.8 80 115-200 12-93 (105)
141 3n9u_C Cleavage and polyadenyl 99.7 1.1E-17 3.6E-22 141.5 9.9 82 118-199 54-137 (156)
142 2cqp_A RNA-binding protein 12; 99.7 4.9E-18 1.7E-22 132.5 7.3 82 292-373 14-95 (98)
143 2div_A TRNA selenocysteine ass 99.7 1E-17 3.6E-22 130.8 9.1 84 116-199 6-94 (99)
144 3s7r_A Heterogeneous nuclear r 99.7 1.8E-17 6.2E-22 126.1 10.2 78 292-370 10-87 (87)
145 2dgp_A Bruno-like 4, RNA bindi 99.7 1.1E-17 3.6E-22 132.6 9.2 85 116-200 10-97 (106)
146 2cq1_A PTB-like protein L; RRM 99.7 2.6E-17 8.9E-22 127.7 11.2 79 293-377 15-95 (101)
147 3ucg_A Polyadenylate-binding p 99.7 1.5E-17 5.3E-22 127.1 9.8 80 119-199 6-85 (89)
148 2ywk_A Putative RNA-binding pr 99.7 1.6E-17 5.6E-22 128.7 10.0 81 116-197 13-93 (95)
149 3ulh_A THO complex subunit 4; 99.7 1.7E-17 6E-22 131.6 10.3 80 291-371 27-106 (107)
150 2dnq_A RNA-binding protein 4B; 99.7 2.8E-17 9.7E-22 125.8 11.2 78 292-377 7-84 (90)
151 2mss_A Protein (musashi1); RNA 99.7 5.7E-18 2E-22 124.9 6.9 75 295-370 1-75 (75)
152 2cpy_A RNA-binding protein 12; 99.7 4.2E-18 1.4E-22 136.6 6.6 83 292-376 14-97 (114)
153 2fy1_A RNA-binding motif prote 99.7 1.9E-17 6.6E-22 132.9 10.4 84 116-200 4-87 (116)
154 1x4e_A RNA binding motif, sing 99.7 4.6E-18 1.6E-22 128.8 6.3 82 116-197 2-83 (85)
155 2dhg_A TRNA selenocysteine ass 99.7 1.9E-17 6.4E-22 130.7 10.1 84 116-200 6-91 (104)
156 1oo0_B CG8781-PA, drosophila Y 99.7 1.6E-17 5.4E-22 132.5 9.6 84 116-199 23-106 (110)
157 2jvr_A Nucleolar protein 3; RN 99.7 1.8E-17 6.3E-22 130.8 9.8 77 293-373 28-105 (111)
158 1wex_A Hypothetical protein (r 99.7 3.2E-17 1.1E-21 128.1 11.0 79 293-377 15-95 (104)
159 1wg5_A Heterogeneous nuclear r 99.7 2.7E-17 9.3E-22 129.4 10.7 83 292-376 14-97 (104)
160 2fc9_A NCL protein; structure 99.7 4.2E-17 1.4E-21 127.8 11.7 80 292-375 14-93 (101)
161 2khc_A Testis-specific RNP-typ 99.7 1.1E-17 3.9E-22 135.2 8.6 82 116-197 37-118 (118)
162 1p1t_A Cleavage stimulation fa 99.7 7.7E-18 2.6E-22 132.9 7.4 84 293-376 8-91 (104)
163 3ulh_A THO complex subunit 4; 99.7 2.9E-17 9.9E-22 130.3 10.8 82 115-197 25-106 (107)
164 4a8x_A RNA-binding protein wit 99.7 1.3E-17 4.4E-22 127.3 8.4 83 117-199 2-85 (88)
165 2dgw_A Probable RNA-binding pr 99.7 2.4E-17 8.3E-22 126.5 10.0 79 293-374 10-88 (91)
166 2jwn_A Embryonic polyadenylate 99.7 2.4E-17 8.1E-22 134.6 10.5 83 292-375 35-117 (124)
167 2j76_E EIF-4B, EIF4B, eukaryot 99.7 7.2E-18 2.5E-22 131.8 7.1 81 292-374 18-99 (100)
168 2dng_A Eukaryotic translation 99.7 2E-17 6.7E-22 130.2 9.5 83 116-200 12-94 (103)
169 2ek1_A RNA-binding protein 12; 99.7 7.1E-18 2.4E-22 130.7 6.8 81 117-197 13-93 (95)
170 2cpe_A RNA-binding protein EWS 99.7 1.7E-17 5.8E-22 133.0 9.1 85 116-200 12-104 (113)
171 1h2v_Z 20 kDa nuclear CAP bind 99.7 3.3E-17 1.1E-21 139.4 11.3 84 116-199 36-119 (156)
172 2mss_A Protein (musashi1); RNA 99.7 1.1E-17 3.8E-22 123.4 7.2 75 121-196 1-75 (75)
173 2dh8_A DAZ-associated protein 99.7 1.5E-17 5E-22 131.5 8.4 84 116-200 13-96 (105)
174 1wez_A HnRNP H', FTP-3, hetero 99.7 8.9E-18 3.1E-22 131.4 7.1 80 292-374 14-93 (102)
175 3r27_A HnRNP L, heterogeneous 99.7 3.3E-17 1.1E-21 125.4 10.0 78 116-199 18-97 (100)
176 2ad9_A Polypyrimidine tract-bi 99.7 2.3E-17 7.7E-22 131.2 9.3 79 293-377 31-111 (119)
177 2dgv_A HnRNP M, heterogeneous 99.7 3.5E-17 1.2E-21 125.9 10.2 83 116-200 5-87 (92)
178 2ek1_A RNA-binding protein 12; 99.7 6.1E-18 2.1E-22 131.1 5.9 80 293-372 15-94 (95)
179 2err_A Ataxin-2-binding protei 99.7 2E-17 7E-22 131.3 9.0 82 290-373 26-107 (109)
180 2hvz_A Splicing factor, argini 99.7 1.7E-17 5.7E-22 130.1 8.4 84 120-208 1-100 (101)
181 1p1t_A Cleavage stimulation fa 99.7 1.9E-17 6.6E-22 130.6 8.8 82 119-200 8-89 (104)
182 2cqd_A RNA-binding region cont 99.7 2.5E-17 8.5E-22 132.7 9.5 83 116-199 14-96 (116)
183 2dgt_A RNA-binding protein 30; 99.7 1E-16 3.5E-21 123.2 12.4 77 292-376 9-85 (92)
184 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.1E-17 3.7E-22 124.2 6.6 76 120-196 1-76 (77)
185 3ex7_B RNA-binding protein 8A; 99.7 3E-17 1E-21 134.4 9.9 84 116-199 19-102 (126)
186 1wi8_A EIF-4B, eukaryotic tran 99.7 2E-17 6.8E-22 130.4 8.5 82 117-200 13-95 (104)
187 2dnn_A RNA-binding protein 12; 99.7 3.5E-17 1.2E-21 129.0 9.8 80 293-375 16-95 (109)
188 2fc8_A NCL protein; structure 99.7 3.6E-17 1.2E-21 128.5 9.9 83 291-376 13-95 (102)
189 2ki2_A SS-DNA binding protein 99.7 4.9E-18 1.7E-22 130.2 4.8 82 294-376 2-83 (90)
190 1wez_A HnRNP H', FTP-3, hetero 99.7 2E-17 6.7E-22 129.4 8.2 80 116-198 12-91 (102)
191 2cq3_A RNA-binding protein 9; 99.7 6.5E-17 2.2E-21 127.3 11.2 83 116-200 12-94 (103)
192 1uaw_A Mouse-musashi-1; RNP-ty 99.7 9.2E-18 3.1E-22 124.5 6.0 76 294-370 1-76 (77)
193 1x4g_A Nucleolysin TIAR; struc 99.7 6.7E-17 2.3E-21 128.5 11.4 80 292-377 24-103 (109)
194 2nlw_A Eukaryotic translation 99.7 4.2E-17 1.4E-21 128.6 10.0 80 293-374 15-101 (105)
195 2cqp_A RNA-binding protein 12; 99.7 1.1E-17 3.8E-22 130.4 6.6 83 116-198 12-94 (98)
196 1u6f_A Tcubp1, RNA-binding pro 99.7 3.5E-17 1.2E-21 136.5 10.0 85 116-200 39-123 (139)
197 2rs2_A Musashi-1, RNA-binding 99.7 2.7E-17 9.3E-22 130.5 8.9 83 116-199 22-104 (109)
198 1x4e_A RNA binding motif, sing 99.7 4.3E-18 1.5E-22 128.9 4.0 79 293-371 5-83 (85)
199 2cqi_A Nucleolysin TIAR; RNA r 99.7 6.3E-17 2.2E-21 127.3 10.7 83 116-200 12-94 (103)
200 1why_A Hypothetical protein ri 99.7 8.5E-17 2.9E-21 125.0 11.2 77 293-375 17-95 (97)
201 1wg5_A Heterogeneous nuclear r 99.7 4E-17 1.4E-21 128.5 9.4 83 116-200 12-95 (104)
202 2cq4_A RNA binding motif prote 99.7 2.3E-17 7.9E-22 132.4 8.0 81 119-200 25-105 (114)
203 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.6E-17 5.5E-22 129.8 6.8 82 116-199 16-98 (100)
204 2hvz_A Splicing factor, argini 99.7 5E-17 1.7E-21 127.4 9.6 78 294-376 1-78 (101)
205 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 9.8E-17 3.3E-21 134.0 12.0 81 290-370 60-140 (140)
206 2dgw_A Probable RNA-binding pr 99.7 5.9E-17 2E-21 124.3 9.7 81 116-199 7-87 (91)
207 2dgx_A KIAA0430 protein; RRM d 99.7 4.1E-17 1.4E-21 126.4 8.9 81 117-200 7-91 (96)
208 2do0_A HnRNP M, heterogeneous 99.7 8.7E-17 3E-21 129.1 11.1 82 116-198 12-93 (114)
209 2hgl_A HNRPF protein, heteroge 99.7 2.1E-17 7.2E-22 135.6 7.6 82 116-199 41-125 (136)
210 2cpd_A Apobec-1 stimulating pr 99.7 2.4E-16 8.3E-21 122.9 13.3 76 292-375 14-91 (99)
211 2a3j_A U1 small nuclear ribonu 99.7 5.7E-17 1.9E-21 131.4 9.8 81 293-376 29-113 (127)
212 2cpj_A Non-POU domain-containi 99.7 7.3E-17 2.5E-21 125.9 10.0 80 291-376 13-92 (99)
213 2kt5_A RNA and export factor-b 99.7 8.7E-17 3E-21 131.1 10.7 84 116-200 32-115 (124)
214 2cqg_A TDP-43, TAR DNA-binding 99.7 1.1E-16 3.8E-21 125.9 11.0 83 116-200 12-94 (103)
215 2jvo_A Nucleolar protein 3; nu 99.7 6.8E-17 2.3E-21 127.8 9.5 81 288-376 26-106 (108)
216 2dis_A Unnamed protein product 99.7 5.4E-17 1.9E-21 129.2 9.1 86 116-201 5-94 (109)
217 2cpi_A CCR4-NOT transcription 99.7 4.4E-17 1.5E-21 129.9 8.4 86 117-202 13-104 (111)
218 1x4a_A Splicing factor, argini 99.7 9.6E-17 3.3E-21 127.7 10.4 82 116-200 19-100 (109)
219 2db1_A Heterogeneous nuclear r 99.7 3E-17 1E-21 132.3 7.4 82 116-199 14-98 (118)
220 1x4f_A Matrin 3; structural ge 99.7 2.7E-17 9.1E-22 129.3 6.9 84 116-205 22-108 (112)
221 2cpy_A RNA-binding protein 12; 99.7 2.2E-17 7.4E-22 132.4 6.5 83 116-200 12-95 (114)
222 2dnp_A RNA-binding protein 14; 99.7 1.6E-16 5.3E-21 121.6 11.1 77 292-376 8-84 (90)
223 2m2b_A RNA-binding protein 10; 99.7 2.9E-17 9.9E-22 135.2 7.4 83 117-200 21-109 (131)
224 2lcw_A RNA-binding protein FUS 99.5 1.7E-18 5.8E-23 139.5 0.0 84 293-376 7-98 (116)
225 2ki2_A SS-DNA binding protein 99.7 1.2E-17 4.1E-22 128.0 4.7 80 120-200 2-81 (90)
226 2cpj_A Non-POU domain-containi 99.7 7.6E-17 2.6E-21 125.8 9.3 85 116-206 12-96 (99)
227 1x5o_A RNA binding motif, sing 99.7 6.3E-17 2.2E-21 129.9 9.1 81 292-373 24-112 (114)
228 1wf1_A RNA-binding protein RAL 99.7 1.5E-16 5.1E-21 126.7 11.1 75 293-375 27-102 (110)
229 2hgl_A HNRPF protein, heteroge 99.7 1.9E-17 6.3E-22 135.9 6.0 81 292-374 43-126 (136)
230 1x4f_A Matrin 3; structural ge 99.7 2.3E-17 7.7E-22 129.7 6.1 79 293-377 25-106 (112)
231 2krb_A Eukaryotic translation 99.7 3.2E-17 1.1E-21 122.8 6.6 73 119-193 1-80 (81)
232 2krb_A Eukaryotic translation 99.7 3.2E-17 1.1E-21 122.8 6.5 73 294-368 2-81 (81)
233 2db1_A Heterogeneous nuclear r 99.7 2.8E-17 9.7E-22 132.4 6.7 81 292-374 16-99 (118)
234 2ad9_A Polypyrimidine tract-bi 99.7 8.9E-17 3E-21 127.8 9.2 79 116-200 28-108 (119)
235 1x4b_A Heterogeneous nuclear r 99.7 6.2E-17 2.1E-21 130.4 8.5 81 119-200 27-107 (116)
236 2dnn_A RNA-binding protein 12; 99.7 5.3E-17 1.8E-21 127.9 7.8 79 119-200 16-94 (109)
237 2nlw_A Eukaryotic translation 99.7 5E-17 1.7E-21 128.2 7.5 81 117-199 13-100 (105)
238 1iqt_A AUF1, heterogeneous nuc 99.7 2.7E-17 9.2E-22 121.3 5.6 75 295-370 1-75 (75)
239 2hgn_A Heterogeneous nuclear r 99.7 1.6E-17 5.6E-22 136.7 4.9 81 292-375 45-125 (139)
240 1x4d_A Matrin 3; structural ge 99.7 5.7E-17 1.9E-21 125.6 7.6 80 117-202 13-95 (102)
241 2cpx_A Hypothetical protein FL 99.7 1.9E-17 6.5E-22 133.2 5.2 82 292-377 24-109 (115)
242 2cqh_A IGF-II mRNA-binding pro 99.7 8.4E-17 2.9E-21 124.0 8.6 78 292-376 7-86 (93)
243 2cq1_A PTB-like protein L; RRM 99.7 1.2E-16 4.2E-21 123.9 9.5 79 116-200 12-92 (101)
244 1wel_A RNA-binding protein 12; 99.7 2.4E-17 8.2E-22 134.4 5.7 84 116-200 22-105 (124)
245 1x5o_A RNA binding motif, sing 99.7 1.9E-16 6.6E-21 127.0 10.9 81 117-198 23-111 (114)
246 1fj7_A Nucleolin RBD1, protein 99.7 1.4E-17 5E-22 130.5 4.1 83 292-376 16-98 (101)
247 1iqt_A AUF1, heterogeneous nuc 99.7 3.4E-17 1.1E-21 120.8 5.8 75 121-196 1-75 (75)
248 2xnq_A Nuclear polyadenylated 99.7 2.7E-16 9.2E-21 121.9 11.1 76 291-374 20-96 (97)
249 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.3E-16 4.3E-21 133.4 9.8 81 116-196 60-140 (140)
250 2la4_A Nuclear and cytoplasmic 99.7 8E-17 2.7E-21 126.2 8.0 75 293-373 27-101 (101)
251 2lea_A Serine/arginine-rich sp 99.7 2.9E-17 1E-21 135.5 5.8 84 116-199 44-127 (135)
252 2err_A Ataxin-2-binding protei 99.7 9.2E-17 3.2E-21 127.5 8.5 82 116-199 26-107 (109)
253 2ytc_A PRE-mRNA-splicing facto 99.7 1.8E-16 6.2E-21 119.9 9.7 74 292-371 11-85 (85)
254 2kvi_A Nuclear polyadenylated 99.7 7.7E-17 2.6E-21 124.9 7.6 76 293-376 10-86 (96)
255 2jwn_A Embryonic polyadenylate 99.7 1.1E-16 3.7E-21 130.6 8.9 80 119-199 36-115 (124)
256 1wex_A Hypothetical protein (r 99.7 1.8E-16 6.2E-21 123.8 9.7 79 116-200 12-92 (104)
257 2kn4_A Immunoglobulin G-bindin 99.7 1.4E-16 4.8E-21 136.0 9.7 84 116-199 67-150 (158)
258 2e5j_A Methenyltetrahydrofolat 99.7 1E-16 3.5E-21 124.5 8.0 79 292-375 18-96 (97)
259 1whx_A Hypothetical protein ri 99.7 1.5E-16 5.2E-21 126.6 9.0 76 293-374 10-85 (111)
260 2lmi_A GRSF-1, G-rich sequence 99.7 4.1E-17 1.4E-21 129.1 5.6 82 116-199 8-92 (107)
261 2jvr_A Nucleolar protein 3; RN 99.7 9.2E-17 3.2E-21 126.8 7.5 80 115-198 24-104 (111)
262 1nu4_A U1A RNA binding domain; 99.7 1.4E-16 4.8E-21 123.9 8.3 80 293-375 8-91 (97)
263 2lmi_A GRSF-1, G-rich sequence 99.7 3.4E-17 1.2E-21 129.6 4.9 81 292-374 10-93 (107)
264 2dnq_A RNA-binding protein 4B; 99.7 3.5E-16 1.2E-20 119.7 10.3 77 116-200 5-81 (90)
265 1fjc_A Nucleolin RBD2, protein 99.7 1.2E-16 4.2E-21 123.9 7.9 80 292-376 15-94 (96)
266 2dha_A FLJ20171 protein; RRM d 99.7 6.8E-17 2.3E-21 130.1 6.6 81 116-198 20-104 (123)
267 1wg1_A KIAA1579 protein, homol 99.7 1.5E-16 5E-21 121.1 8.1 84 117-207 3-86 (88)
268 2a3j_A U1 small nuclear ribonu 99.7 2.5E-16 8.5E-21 127.7 9.9 83 116-201 26-112 (127)
269 2hgm_A HNRPF protein, heteroge 99.7 9.4E-17 3.2E-21 129.5 7.3 80 116-198 39-120 (126)
270 1why_A Hypothetical protein ri 99.7 3.7E-16 1.3E-20 121.4 10.3 79 116-200 14-94 (97)
271 1wel_A RNA-binding protein 12; 99.7 1.8E-17 6E-22 135.1 2.7 82 292-374 24-105 (124)
272 2la4_A Nuclear and cytoplasmic 99.7 3E-16 1E-20 123.0 9.5 79 114-198 22-100 (101)
273 2cq2_A Hypothetical protein LO 99.7 3.7E-16 1.3E-20 122.7 9.9 78 293-376 25-109 (114)
274 3lqv_A PRE-mRNA branch site pr 99.7 2.9E-16 1E-20 126.2 9.6 81 293-376 8-88 (115)
275 2fc8_A NCL protein; structure 99.7 3E-16 1E-20 123.2 9.3 83 115-200 11-93 (102)
276 1x4c_A Splicing factor, argini 99.7 3.6E-16 1.2E-20 124.0 9.8 78 116-200 12-94 (108)
277 1x5p_A Negative elongation fac 99.7 1.5E-15 5E-20 117.9 13.0 78 292-377 14-91 (97)
278 2fc9_A NCL protein; structure 99.7 2.6E-16 9E-21 123.3 8.5 81 116-200 12-92 (101)
279 3zzy_A Polypyrimidine tract-bi 99.7 5.2E-16 1.8E-20 124.8 10.3 80 292-376 27-109 (130)
280 1x4g_A Nucleolysin TIAR; struc 99.7 3.4E-16 1.1E-20 124.4 9.2 81 115-201 21-101 (109)
281 1fj7_A Nucleolin RBD1, protein 99.6 3.1E-17 1.1E-21 128.6 3.0 81 117-199 15-95 (101)
282 2hgn_A Heterogeneous nuclear r 99.6 6E-17 2E-21 133.3 4.8 81 116-199 43-123 (139)
283 3beg_B Splicing factor, argini 99.6 3.4E-16 1.2E-20 125.4 9.0 76 293-375 16-96 (115)
284 2hgm_A HNRPF protein, heteroge 99.6 1E-16 3.6E-21 129.2 6.0 80 292-374 41-122 (126)
285 2diu_A KIAA0430 protein; struc 99.6 8.5E-16 2.9E-20 113.9 10.1 74 294-377 10-88 (96)
286 2dha_A FLJ20171 protein; RRM d 99.6 7E-17 2.4E-21 130.0 4.7 81 293-375 23-107 (123)
287 2e5g_A U6 snRNA-specific termi 99.6 5.5E-16 1.9E-20 119.6 9.5 77 293-375 8-84 (94)
288 2e44_A Insulin-like growth fac 99.6 5.6E-16 1.9E-20 120.1 9.6 78 293-374 15-93 (96)
289 2j8a_A Histone-lysine N-methyl 99.6 2.6E-16 8.8E-21 123.6 7.6 79 294-372 3-95 (136)
290 2j8a_A Histone-lysine N-methyl 99.6 2.2E-16 7.4E-21 124.0 7.0 78 120-197 3-94 (136)
291 2e5j_A Methenyltetrahydrofolat 99.6 4.3E-16 1.5E-20 121.0 8.6 80 116-200 16-95 (97)
292 2f3j_A RNA and export factor b 99.6 4.2E-16 1.4E-20 134.8 9.4 84 291-375 86-169 (177)
293 2f3j_A RNA and export factor b 99.6 4.7E-16 1.6E-20 134.4 9.6 85 116-201 85-169 (177)
294 1sjr_A Polypyrimidine tract-bi 99.6 5.1E-16 1.7E-20 129.7 9.4 79 293-375 46-126 (164)
295 2ytc_A PRE-mRNA-splicing facto 99.6 6.4E-16 2.2E-20 116.9 9.2 76 116-197 9-85 (85)
296 2xnq_A Nuclear polyadenylated 99.6 9.2E-16 3.2E-20 118.8 10.2 79 113-199 16-95 (97)
297 2diu_A KIAA0430 protein; struc 99.6 9E-16 3.1E-20 113.8 9.4 80 116-205 6-90 (96)
298 2cpx_A Hypothetical protein FL 99.6 9.7E-17 3.3E-21 129.1 4.5 81 116-200 22-106 (115)
299 2lcw_A RNA-binding protein FUS 99.4 2E-17 6.7E-22 133.2 0.0 84 117-200 5-96 (116)
300 3d2w_A TAR DNA-binding protein 99.6 1.5E-15 5E-20 115.5 10.3 74 293-375 11-86 (89)
301 2jvo_A Nucleolar protein 3; nu 99.6 9.3E-16 3.2E-20 121.3 9.4 77 116-200 28-104 (108)
302 2xs2_A Deleted in azoospermia- 99.6 3E-16 1E-20 123.2 6.5 81 293-376 9-89 (102)
303 2dgt_A RNA-binding protein 30; 99.6 1E-15 3.4E-20 117.6 9.3 77 116-200 7-83 (92)
304 2dnp_A RNA-binding protein 14; 99.6 1.1E-15 3.6E-20 117.0 9.2 77 116-200 6-82 (90)
305 1nu4_A U1A RNA binding domain; 99.6 3.6E-16 1.2E-20 121.5 6.6 83 116-201 5-91 (97)
306 4f02_A Polyadenylate-binding p 99.6 1.1E-15 3.9E-20 137.1 10.6 83 293-375 15-97 (213)
307 2kvi_A Nuclear polyadenylated 99.6 8.3E-16 2.8E-20 119.0 8.4 76 116-199 7-83 (96)
308 2e5i_A Heterogeneous nuclear r 99.6 1.6E-15 5.5E-20 121.6 10.2 78 292-375 24-104 (124)
309 2dgu_A Heterogeneous nuclear r 99.6 1.2E-15 4E-20 119.9 9.3 77 116-200 8-84 (103)
310 1whx_A Hypothetical protein ri 99.6 8.3E-16 2.8E-20 122.3 8.4 75 118-198 9-83 (111)
311 2xs2_A Deleted in azoospermia- 99.6 4E-16 1.4E-20 122.5 6.4 80 118-200 8-87 (102)
312 1wg1_A KIAA1579 protein, homol 99.6 1.5E-15 5E-20 115.6 9.3 75 293-374 5-79 (88)
313 3egn_A RNA-binding protein 40; 99.6 2E-16 6.9E-21 132.4 4.4 84 293-376 45-133 (143)
314 2cpd_A Apobec-1 stimulating pr 99.6 2.6E-15 8.9E-20 117.0 10.2 77 116-200 12-90 (99)
315 2pe8_A Splicing factor 45; RRM 99.6 2.3E-15 8E-20 117.7 9.9 82 292-373 7-94 (105)
316 2dnl_A Cytoplasmic polyadenyla 99.6 1.5E-15 5.1E-20 121.6 8.9 77 117-196 6-85 (114)
317 1wf0_A TDP-43, TAR DNA-binding 99.6 1.1E-15 3.7E-20 116.4 7.5 77 293-376 5-81 (88)
318 1fjc_A Nucleolin RBD2, protein 99.6 4.6E-16 1.6E-20 120.7 5.5 78 117-199 14-91 (96)
319 2voo_A Lupus LA protein; RNA-b 99.6 6.5E-15 2.2E-19 129.2 13.4 122 252-375 63-189 (193)
320 2e44_A Insulin-like growth fac 99.6 1.5E-15 5.2E-20 117.7 8.3 79 117-199 13-92 (96)
321 2i2y_A Fusion protein consists 99.6 2E-15 6.8E-20 127.4 9.5 79 116-199 70-148 (150)
322 2e5g_A U6 snRNA-specific termi 99.6 2.4E-15 8.3E-20 115.9 9.0 78 116-199 5-82 (94)
323 1b7f_A Protein (SXL-lethal pro 99.6 2.9E-15 1E-19 129.2 10.5 83 293-375 3-85 (168)
324 3egn_A RNA-binding protein 40; 99.6 3.8E-16 1.3E-20 130.8 4.4 84 116-199 42-130 (143)
325 2cqh_A IGF-II mRNA-binding pro 99.6 1.1E-15 3.9E-20 117.6 6.7 78 116-200 5-84 (93)
326 1fxl_A Paraneoplastic encephal 99.6 3.9E-15 1.3E-19 128.3 10.8 82 294-375 3-84 (167)
327 1wf1_A RNA-binding protein RAL 99.6 2.5E-15 8.5E-20 119.6 8.3 75 117-199 25-100 (110)
328 1sjr_A Polypyrimidine tract-bi 99.6 5E-15 1.7E-19 123.7 10.0 80 117-200 44-125 (164)
329 3beg_B Splicing factor, argini 99.6 2.7E-15 9.3E-20 120.2 8.1 74 117-197 14-92 (115)
330 2cq2_A Hypothetical protein LO 99.6 2.7E-15 9.2E-20 117.8 7.6 78 114-197 20-104 (114)
331 3tyt_A Heterogeneous nuclear r 99.6 6.4E-15 2.2E-19 130.8 11.0 77 293-374 4-81 (205)
332 3zzy_A Polypyrimidine tract-bi 99.6 5.2E-15 1.8E-19 119.0 9.4 79 117-200 26-107 (130)
333 2hzc_A Splicing factor U2AF 65 99.6 6.9E-15 2.4E-19 111.7 9.6 70 293-369 6-86 (87)
334 3pgw_S U1-70K; protein-RNA com 99.6 3.9E-15 1.3E-19 147.2 10.3 83 117-199 100-182 (437)
335 3md3_A Nuclear and cytoplasmic 99.6 7.6E-15 2.6E-19 126.3 10.9 82 116-197 84-165 (166)
336 2dnl_A Cytoplasmic polyadenyla 99.6 1.1E-14 3.8E-19 116.5 10.4 78 293-373 8-88 (114)
337 1x5p_A Negative elongation fac 99.6 9.6E-15 3.3E-19 113.3 9.6 77 116-200 12-88 (97)
338 2pe8_A Splicing factor 45; RRM 99.6 1.4E-14 4.6E-19 113.4 10.4 83 116-198 5-93 (105)
339 2qfj_A FBP-interacting repress 99.6 1.1E-14 3.8E-19 131.1 11.3 84 117-200 123-206 (216)
340 2bz2_A Negative elongation fac 99.6 5.6E-15 1.9E-19 119.2 8.3 78 292-377 38-115 (121)
341 2g4b_A Splicing factor U2AF 65 99.6 8.6E-15 2.9E-19 126.8 10.1 80 117-196 92-171 (172)
342 3d2w_A TAR DNA-binding protein 99.6 7.3E-15 2.5E-19 111.6 8.5 75 116-199 8-84 (89)
343 1l3k_A Heterogeneous nuclear r 99.6 1E-14 3.5E-19 129.2 10.6 84 291-375 11-94 (196)
344 2hzc_A Splicing factor U2AF 65 99.6 7.4E-15 2.5E-19 111.5 7.6 72 117-195 4-86 (87)
345 2e5i_A Heterogeneous nuclear r 99.5 1.9E-14 6.6E-19 115.3 10.1 75 120-200 26-103 (124)
346 3pgw_A U1-A; protein-RNA compl 99.5 1.5E-13 5.2E-18 129.1 18.0 81 292-375 8-92 (282)
347 2cjk_A Nuclear polyadenylated 99.5 6.8E-15 2.3E-19 126.8 7.4 80 119-199 87-166 (167)
348 2yh0_A Splicing factor U2AF 65 99.5 1.6E-14 5.5E-19 128.2 10.1 84 116-199 111-194 (198)
349 3u1l_A PRE-mRNA-splicing facto 99.5 1.4E-14 4.6E-19 129.7 9.4 80 290-375 131-231 (240)
350 3v4m_A Splicing factor U2AF 65 99.5 2.4E-14 8.1E-19 112.1 9.7 81 293-373 5-97 (105)
351 2dit_A HIV TAT specific factor 99.5 5.4E-14 1.8E-18 112.0 11.4 82 291-376 13-105 (112)
352 1wf0_A TDP-43, TAR DNA-binding 99.5 7.8E-15 2.7E-19 111.6 4.6 77 117-200 3-79 (88)
353 2bz2_A Negative elongation fac 99.5 4E-14 1.4E-18 114.1 8.7 77 116-200 36-112 (121)
354 3nmr_A Cugbp ELAV-like family 99.5 9.2E-14 3.2E-18 120.6 10.8 78 118-196 94-174 (175)
355 2voo_A Lupus LA protein; RNA-b 99.5 8.4E-14 2.9E-18 122.1 10.0 78 119-198 109-186 (193)
356 1jmt_A Splicing factor U2AF 35 99.5 3.5E-14 1.2E-18 110.9 5.7 72 298-370 20-103 (104)
357 2dit_A HIV TAT specific factor 99.5 1.8E-13 6.1E-18 109.0 9.7 85 114-202 10-105 (112)
358 2adc_A Polypyrimidine tract-bi 99.5 1.3E-13 4.5E-18 125.1 10.0 80 291-375 32-112 (229)
359 3ue2_A Poly(U)-binding-splicin 99.5 8.8E-14 3E-18 110.8 7.8 80 293-372 20-108 (118)
360 3u1l_A PRE-mRNA-splicing facto 99.4 1.5E-13 5E-18 123.0 8.7 79 116-200 131-230 (240)
361 3sde_A Paraspeckle component 1 99.4 2.1E-13 7.2E-18 126.3 9.9 78 290-373 19-96 (261)
362 1fje_B Nucleolin RBD12, protei 99.4 1.3E-13 4.5E-18 119.6 7.8 77 118-199 98-174 (175)
363 1qm9_A Polypyrimidine tract-bi 99.4 1.5E-13 5.1E-18 121.9 7.8 77 294-375 4-81 (198)
364 3v4m_A Splicing factor U2AF 65 99.4 2.9E-13 1E-17 105.8 8.2 81 118-198 4-96 (105)
365 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.2E-12 4.3E-17 100.7 10.8 67 303-376 27-93 (100)
366 3ue2_A Poly(U)-binding-splicin 99.4 7.6E-13 2.6E-17 105.4 8.0 82 117-198 18-108 (118)
367 3s6e_A RNA-binding protein 39; 99.4 1E-12 3.5E-17 103.9 8.1 79 292-374 6-94 (114)
368 1jmt_A Splicing factor U2AF 35 99.4 2.7E-13 9.2E-18 105.9 3.6 72 124-196 20-103 (104)
369 3tht_A Alkylated DNA repair pr 99.3 5.6E-12 1.9E-16 119.1 10.0 74 292-371 17-97 (345)
370 2d9o_A DNAJ (HSP40) homolog, s 99.3 2.7E-11 9.1E-16 93.2 10.3 74 119-199 10-90 (100)
371 3s6e_A RNA-binding protein 39; 99.2 4.2E-11 1.4E-15 94.6 8.7 78 116-197 4-91 (114)
372 3tht_A Alkylated DNA repair pr 99.2 2.1E-11 7.3E-16 115.1 8.0 77 114-196 13-96 (345)
373 2dnr_A Synaptojanin-1; RRM dom 99.2 1.2E-10 4E-15 85.6 8.7 71 294-373 8-86 (91)
374 1owx_A Lupus LA protein, SS-B, 99.1 2E-10 7E-15 90.5 8.9 76 116-197 15-94 (121)
375 1owx_A Lupus LA protein, SS-B, 99.1 3.2E-10 1.1E-14 89.4 9.1 74 293-372 18-95 (121)
376 2dnr_A Synaptojanin-1; RRM dom 99.0 4E-10 1.4E-14 82.8 7.1 73 117-198 5-85 (91)
377 1ufw_A Synaptojanin 2; RNP dom 99.0 6.8E-10 2.3E-14 81.9 5.3 70 294-372 16-94 (95)
378 3dxb_A Thioredoxin N-terminall 98.9 1.3E-08 4.3E-13 91.6 11.9 69 305-373 141-213 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.9 3.7E-09 1.3E-13 78.0 6.4 72 116-196 12-92 (95)
380 3dxb_A Thioredoxin N-terminall 98.7 6.5E-08 2.2E-12 86.9 10.7 82 117-198 122-212 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.6 2.4E-07 8.1E-12 69.6 9.5 70 294-369 22-96 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.4 1.9E-06 6.6E-11 64.7 9.8 74 117-196 19-97 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.3 1.2E-05 4.1E-10 60.0 10.9 87 117-212 6-99 (104)
384 1wey_A Calcipressin 1; structu 97.9 2.8E-05 9.5E-10 58.4 7.3 74 294-373 6-84 (104)
385 1uw4_A UPF3X; nonsense mediate 97.7 9.7E-05 3.3E-09 54.7 7.4 69 120-188 2-72 (91)
386 2dhx_A Poly (ADP-ribose) polym 97.7 0.00076 2.6E-08 50.4 11.7 75 294-377 9-88 (104)
387 1wey_A Calcipressin 1; structu 97.6 0.00014 4.9E-09 54.6 6.1 74 119-198 5-83 (104)
388 1uw4_A UPF3X; nonsense mediate 97.5 0.00063 2.1E-08 50.3 9.2 79 294-372 2-87 (91)
389 1whv_A Poly(A)-specific ribonu 97.2 0.00094 3.2E-08 49.2 7.0 58 116-182 13-70 (100)
390 1wwh_A Nucleoporin 35, nucleop 97.2 0.003 1E-07 48.9 10.0 73 293-373 24-97 (119)
391 2l08_A Regulator of nonsense t 97.0 0.0007 2.4E-08 50.3 4.4 71 118-188 8-80 (97)
392 1whv_A Poly(A)-specific ribonu 97.0 0.0014 4.9E-08 48.2 5.8 54 293-355 16-69 (100)
393 1wwh_A Nucleoporin 35, nucleop 96.9 0.0029 1E-07 49.0 7.6 72 118-197 23-95 (119)
394 3ctr_A Poly(A)-specific ribonu 96.9 0.0025 8.7E-08 47.1 6.4 54 120-182 7-60 (101)
395 2l08_A Regulator of nonsense t 96.9 0.0035 1.2E-07 46.5 7.1 79 293-371 9-94 (97)
396 3ctr_A Poly(A)-specific ribonu 96.8 0.0015 5E-08 48.3 4.3 54 294-356 7-60 (101)
397 3p3d_A Nucleoporin 53; structu 96.0 0.012 4E-07 46.2 5.9 78 294-373 8-99 (132)
398 3pq1_A Poly(A) RNA polymerase; 95.5 0.0083 2.8E-07 58.6 4.0 55 119-179 53-107 (464)
399 3p3d_A Nucleoporin 53; structu 95.3 0.015 5.2E-07 45.6 4.0 79 118-198 6-98 (132)
400 3pq1_A Poly(A) RNA polymerase; 94.9 0.012 4.1E-07 57.5 2.8 55 294-354 54-108 (464)
401 3d45_A Poly(A)-specific ribonu 86.1 1.7 5.7E-05 43.4 7.7 55 120-183 441-495 (507)
402 3d45_A Poly(A)-specific ribonu 85.1 1.9 6.6E-05 42.9 7.6 56 292-356 439-494 (507)
403 2pk2_A Cyclin-T1, protein TAT; 84.7 0.18 6.3E-06 47.9 0.0 11 305-315 229-239 (358)
404 2g0c_A ATP-dependent RNA helic 65.0 15 0.00051 25.5 5.6 59 304-371 12-75 (76)
405 4eyt_A Telomerase associated p 54.4 55 0.0019 23.2 7.7 55 293-355 12-66 (129)
406 2g0c_A ATP-dependent RNA helic 52.8 40 0.0014 23.1 6.2 59 129-196 11-74 (76)
407 1b34_A Protein (small nuclear 45.4 4.4 0.00015 31.3 0.0 9 337-345 65-73 (119)
408 4eyt_A Telomerase associated p 40.8 95 0.0032 22.0 8.3 57 118-182 11-67 (129)
409 3l9o_A ATP-dependent RNA helic 35.9 7.7 0.00026 42.8 0.0 19 162-180 228-246 (1108)
410 4e8u_A Putative uncharacterize 35.8 70 0.0024 26.2 5.7 56 121-179 14-81 (172)
411 2ot8_C HnRNP M, heterogeneous 35.7 12 0.00042 20.3 0.8 9 485-493 16-24 (30)
412 3l9o_A ATP-dependent RNA helic 34.0 11 0.00038 41.5 0.9 10 126-135 180-189 (1108)
413 2z5n_B Heterogeneous nuclear r 30.0 34 0.0012 18.2 2.0 8 486-493 17-24 (26)
414 4e8u_A Putative uncharacterize 26.2 63 0.0022 26.5 3.9 50 294-346 13-73 (172)
415 3zzp_A TS9, ribosomal protein 21.6 1.6E+02 0.0056 20.3 4.8 59 163-223 7-68 (77)
416 3tj1_A RNA polymerase I-specif 20.4 22 0.00077 36.1 0.2 6 137-142 387-392 (649)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.9e-43 Score=336.11 Aligned_cols=252 Identities=21% Similarity=0.331 Sum_probs=215.2
Q ss_pred hhcCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceE
Q 011105 112 LLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (493)
Q Consensus 112 ~~~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i 191 (493)
....+...++|||+|||+++|+++|+++|+.||.|.+|+|+.+..+ ++|||||+|.+.++|.+|++ +++..|.|+.|
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i 110 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEI 110 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEEC
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEE
Confidence 3445667899999999999999999999999999999999998753 58999999999999999996 99999999999
Q ss_pred EEecccccccccccCCCCCCCHHHHHHHHHhhC-CCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCccc
Q 011105 192 KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 270 (493)
Q Consensus 192 ~V~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~ 270 (493)
.|.++ ...+|||+|||..+++++|+.+|..+| . |..+.++.+.. +.+++||||+|.+.++|..|+..|++. .+
T Consensus 111 ~v~~~-~~~~l~v~nlp~~~t~~~l~~~f~~~G~~-i~~v~i~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~--~~ 184 (292)
T 2ghp_A 111 IVSHL-TECTLWMTNFPPSYTQRNIRDLLQDINVV-ALSIRLPSLRF--NTSRRFAYIDVTSKEDARYCVEKLNGL--KI 184 (292)
T ss_dssp EEEEC-CSCEEEEECCCTTCCHHHHHHHHHHTTCC-CCEEECC---------CCEEEEECSSHHHHHHHHHHHTTC--EE
T ss_pred EEEEC-CCCEEEEECCCCCCCHHHHHHHHHHhCCC-eEEEEEEeCCC--CCcceEEEEEECCHHHHHHHHHHhCCC--Ee
Confidence 99987 467899999999999999999999999 7 99999998743 778999999999999999999999974 56
Q ss_pred CCCCCeeeecCCCCccc---ccccccceEEEccCCCC-CCHHHHHHHHhcCCcEEEEEeCCCCC-CCCcccEEEEEeCCH
Q 011105 271 DDNAPTVSWADPRNAES---SAASQVKALYVKNLPKD-ITQDRLKELFAHHGKITKVVIPPAKP-GQERSRYGFVHFAER 345 (493)
Q Consensus 271 ~~~~~~~~~~~~~~~~~---~~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~G~v~~v~i~~~~~-~~~~~g~~fV~f~~~ 345 (493)
.++.+.+.++.+..... ......++|||+|||+. +|+++|+++|+.||.|..|+|+++.. ++.++|||||+|.+.
T Consensus 185 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 185 EGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp TTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 78999999988765433 23345689999999999 99999999999999999999999887 577899999999999
Q ss_pred HHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 346 SSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 346 ~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
++|.+|+ .||+..|.|++|.|.|+.++
T Consensus 265 ~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 265 DSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999999 99999999999999999886
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.8e-43 Score=334.90 Aligned_cols=248 Identities=18% Similarity=0.319 Sum_probs=227.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
...+++|||+|||+++|+++|+++|+.|| |.+|.+ ++++|||||+|.+.++|.+|++.|++..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 91 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL 91 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe
Confidence 34679999999999999999999999999 999988 45789999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCC
Q 011105 196 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 275 (493)
Q Consensus 196 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 275 (493)
+....+|||+|||..+++++|+.+|..+|. |..+.++.+ ..++.++|||||+|.+.++|..|+..+++. .+.++.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~i 167 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGS-LERCFLVYS-ERTGQSKGYGFAEYMKKDSAARAKSDLLGK--PLGPRTL 167 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEEC
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCC-eeEEEEEee-CCCCccceEEEEEECCHHHHHHHHHHhCCC--EeCCcEE
Confidence 999999999999999999999999999999 999999987 567899999999999999999999999984 5688999
Q ss_pred eeeecCCCCcccccccccceEEEccCCCCC-CHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHh
Q 011105 276 TVSWADPRNAESSAASQVKALYVKNLPKDI-TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354 (493)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 354 (493)
.+.|+.+.... ......++|||+|||+.+ |+++|+++|+.||.|..|+|+.+. ++.++|+|||+|.+.++|.+|+..
T Consensus 168 ~v~~a~~~~~~-~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~ 245 (284)
T 3smz_A 168 YVHWTDAGQLT-PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQ 245 (284)
T ss_dssp EEEECCGGGCC-TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHH
T ss_pred EEEECCCCCCC-cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHH
Confidence 99999876543 223446899999999995 999999999999999999999987 566799999999999999999999
Q ss_pred cCCceecCeEEEEEecCCCCcc
Q 011105 355 TEKYEIDGQVLDCSLAKPQADQ 376 (493)
Q Consensus 355 l~~~~~~g~~i~v~~a~~~~~~ 376 (493)
||+..|.|++|.|.|+.++..+
T Consensus 246 l~g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 246 ADGLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp HTTCEETTEECEEEECCSSSCH
T ss_pred hCCCccCCeEEEEEEecCCCcc
Confidence 9999999999999999988653
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.3e-35 Score=266.27 Aligned_cols=172 Identities=23% Similarity=0.378 Sum_probs=152.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
.+.++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+||+.+++..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCe
Q 011105 197 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 276 (493)
Q Consensus 197 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 276 (493)
......
T Consensus 93 ~~~~~~-------------------------------------------------------------------------- 98 (213)
T 4f02_A 93 QRDPSL-------------------------------------------------------------------------- 98 (213)
T ss_dssp CCCTHH--------------------------------------------------------------------------
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 432110
Q ss_pred eeecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 011105 277 VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356 (493)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~ 356 (493)
......+|||+|||+.+|+++|+++|+.||.|..|+|+++.. .++|||||+|.+.++|.+||..||
T Consensus 99 ------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~--~~~g~~fV~f~~~~~a~~Ai~~ln 164 (213)
T 4f02_A 99 ------------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMN 164 (213)
T ss_dssp ------------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ------------cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC--CCceEEEEEeCCHHHHHHHHHHhC
Confidence 000126899999999999999999999999999999998764 358999999999999999999999
Q ss_pred CceecCeEEEEEecCCCCcc
Q 011105 357 KYEIDGQVLDCSLAKPQADQ 376 (493)
Q Consensus 357 ~~~~~g~~i~v~~a~~~~~~ 376 (493)
+..|+|++|.|.+|.++..+
T Consensus 165 g~~~~g~~i~V~~a~~~~~~ 184 (213)
T 4f02_A 165 GMLLNDRKVFVGRFKSRKER 184 (213)
T ss_dssp TCEETTEECEEEECCCHHHH
T ss_pred CCEECCEEEEEEEcCCCccc
Confidence 99999999999999987543
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=2.9e-33 Score=249.78 Aligned_cols=180 Identities=20% Similarity=0.414 Sum_probs=152.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEe
Q 011105 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (493)
Q Consensus 115 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~ 194 (493)
.+...++|||+|||+++|+++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+||+ +++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeee
Confidence 34567899999999999999999999999999999999999999999999999999999999998 58999999999998
Q ss_pred cccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCC
Q 011105 195 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 274 (493)
Q Consensus 195 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 274 (493)
++....... .
T Consensus 88 ~~~~~~~~~-------------------------------~--------------------------------------- 97 (196)
T 1l3k_A 88 RAVSREDSQ-------------------------------R--------------------------------------- 97 (196)
T ss_dssp ECCC----------------------------------------------------------------------------
T ss_pred cccCccccc-------------------------------c---------------------------------------
Confidence 775321100 0
Q ss_pred CeeeecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHh
Q 011105 275 PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354 (493)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 354 (493)
.......++|||+|||+.+|+++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+||..
T Consensus 98 ------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 98 ------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp -----------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred ------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 00011127999999999999999999999999999999999998888999999999999999999986
Q ss_pred cCCceecCeEEEEEecCCCCccCC
Q 011105 355 TEKYEIDGQVLDCSLAKPQADQKT 378 (493)
Q Consensus 355 l~~~~~~g~~i~v~~a~~~~~~~~ 378 (493)
++..|+|+.|.|.++.++.....
T Consensus 166 -~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 166 -KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp -SCCEETTEECEEEECC-------
T ss_pred -CCcEECCEEEEEEecCChhHhcc
Confidence 89999999999999999876543
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-33 Score=241.55 Aligned_cols=166 Identities=20% Similarity=0.376 Sum_probs=150.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccccc
Q 011105 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~~ 199 (493)
++|||+|||+++|+++|+++|+.||.|.+|+|+.++. ++++|||||+|.+.++|.+|++.|++..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999876 789999999999999999999999999999999999877532
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCeeee
Q 011105 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 279 (493)
Q Consensus 200 ~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 279 (493)
..
T Consensus 80 ~~------------------------------------------------------------------------------ 81 (166)
T 3md3_A 80 QQ------------------------------------------------------------------------------ 81 (166)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 11
Q ss_pred cCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCce
Q 011105 280 ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359 (493)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~ 359 (493)
......++|||+|||+.+|+++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|+..||+..
T Consensus 82 --------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 82 --------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp --------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred --------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 001112799999999999999999999999999999999998889999999999999999999999999999
Q ss_pred ecCeEEEEEecCC
Q 011105 360 IDGQVLDCSLAKP 372 (493)
Q Consensus 360 ~~g~~i~v~~a~~ 372 (493)
|.|++|+|.||++
T Consensus 154 ~~g~~i~v~~a~~ 166 (166)
T 3md3_A 154 LNGRPLRINWAAK 166 (166)
T ss_dssp ETTEECEEEESCC
T ss_pred cCCcEEEEEecCC
Confidence 9999999999864
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.5e-32 Score=249.18 Aligned_cols=182 Identities=23% Similarity=0.410 Sum_probs=155.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
..++|||+|||+++|+++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 35799999999999999999999999999999999999889999999999999999999999999999999999997665
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCee
Q 011105 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277 (493)
Q Consensus 198 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 277 (493)
..... ...... ..
T Consensus 107 ~~~~~----------~~~~~~----------------------------------------~~----------------- 119 (216)
T 2qfj_A 107 NIGQA----------QPIIDQ----------------------------------------LA----------------- 119 (216)
T ss_dssp CCGGG----------HHHHHH----------------------------------------HH-----------------
T ss_pred Ccccc----------chhhhh----------------------------------------hh-----------------
Confidence 32210 000000 00
Q ss_pred eecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCC
Q 011105 278 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357 (493)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~ 357 (493)
......++|||+|||+.+|+++|+++|+.||.|..|+|+++..++.++|||||+|.+.++|.+|+..||+
T Consensus 120 ----------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g 189 (216)
T 2qfj_A 120 ----------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNL 189 (216)
T ss_dssp ----------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ----------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccC
Confidence 0011228999999999999999999999999999999999998899999999999999999999999999
Q ss_pred ceecCeEEEEEecCCCCcc
Q 011105 358 YEIDGQVLDCSLAKPQADQ 376 (493)
Q Consensus 358 ~~~~g~~i~v~~a~~~~~~ 376 (493)
..|.|++|.|.++.++...
T Consensus 190 ~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 190 FDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp CBCSSSBCEEEECSSCSST
T ss_pred CEeCCcEEEEEEecCCCCC
Confidence 9999999999999987543
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.1e-32 Score=239.69 Aligned_cols=165 Identities=30% Similarity=0.481 Sum_probs=152.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
.+++|||+|||+++|+++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999889999999999999999999999999999999999998775
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCee
Q 011105 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277 (493)
Q Consensus 198 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 277 (493)
+...
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (168)
T 1b7f_A 82 PGGE---------------------------------------------------------------------------- 85 (168)
T ss_dssp CCSS----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 3211
Q ss_pred eecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCC
Q 011105 278 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357 (493)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~ 357 (493)
....++|||+|||..+++++|+++|++||.|..+.++++..++.++|||||+|.+.++|.+|+..||+
T Consensus 86 ------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 86 ------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp ------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 00127999999999999999999999999999999999998888899999999999999999999999
Q ss_pred ceecC--eEEEEEec
Q 011105 358 YEIDG--QVLDCSLA 370 (493)
Q Consensus 358 ~~~~g--~~i~v~~a 370 (493)
..|.| ++|+|.||
T Consensus 154 ~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CEecCCCeEEEEEeC
Confidence 99988 99999986
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=2.5e-32 Score=237.11 Aligned_cols=164 Identities=28% Similarity=0.474 Sum_probs=150.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecccc
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~ 198 (493)
+++|||+|||+++|+++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999998899999999999999999999999999999999999977653
Q ss_pred cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCeee
Q 011105 199 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS 278 (493)
Q Consensus 199 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 278 (493)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (167)
T 1fxl_A 82 SSA----------------------------------------------------------------------------- 84 (167)
T ss_dssp CCG-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 211
Q ss_pred ecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCc
Q 011105 279 WADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY 358 (493)
Q Consensus 279 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~ 358 (493)
....++|||+|||..+++++|+++|++||.|..++++.+..++.++|||||+|.+.++|.+|+..||+.
T Consensus 85 -----------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 85 -----------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp -----------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred -----------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 001278999999999999999999999999999999999888888999999999999999999999999
Q ss_pred eecCeE--EEEEec
Q 011105 359 EIDGQV--LDCSLA 370 (493)
Q Consensus 359 ~~~g~~--i~v~~a 370 (493)
.|.|+. |.|.||
T Consensus 154 ~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 154 KPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCccceEEEeC
Confidence 999964 888886
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=5.5e-33 Score=241.27 Aligned_cols=165 Identities=20% Similarity=0.474 Sum_probs=149.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
++++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|.+|++. ...+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 468999999999999999999999999999999999999999999999999999999999983 567899988776554
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCee
Q 011105 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277 (493)
Q Consensus 198 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 277 (493)
+...
T Consensus 80 ~~~~---------------------------------------------------------------------------- 83 (167)
T 2cjk_A 80 PRDE---------------------------------------------------------------------------- 83 (167)
T ss_dssp CHHH----------------------------------------------------------------------------
T ss_pred chhh----------------------------------------------------------------------------
Confidence 2110
Q ss_pred eecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCC
Q 011105 278 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357 (493)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~ 357 (493)
....++|||+|||+.+|+++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|.+|+. +++
T Consensus 84 ------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~ 150 (167)
T 2cjk_A 84 ------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF 150 (167)
T ss_dssp ------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE
T ss_pred ------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC
Confidence 0012789999999999999999999999999999999999889999999999999999999998 899
Q ss_pred ceecCeEEEEEecCCC
Q 011105 358 YEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 358 ~~~~g~~i~v~~a~~~ 373 (493)
..|.|++|.|.||.|+
T Consensus 151 ~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 151 IDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECSSSSCEEEEECCCC
T ss_pred EEeCCeEEEEeecCCC
Confidence 9999999999999886
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.98 E-value=1.7e-31 Score=233.65 Aligned_cols=166 Identities=22% Similarity=0.407 Sum_probs=144.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCC--CcceEEEEEeccHHHHHHHHHHhCCCccc---CceEE
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSG--EAKGYAFVTFRTKELASQAIEELNSCELK---GKKIK 192 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g--~~~g~afV~F~~~e~A~~Al~~l~~~~i~---g~~i~ 192 (493)
..++|||+|||+++|+++|+++|++||.|.+|+|++++.++ +++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999998876 89999999999999999999999998775 45565
Q ss_pred EecccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCC
Q 011105 193 CSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD 272 (493)
Q Consensus 193 V~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~ 272 (493)
+.++.....
T Consensus 82 ~~~~~~~~~----------------------------------------------------------------------- 90 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------------------------------------------- 90 (175)
T ss_dssp EEECGGGCC-----------------------------------------------------------------------
T ss_pred Ecccccccc-----------------------------------------------------------------------
Confidence 554432211
Q ss_pred CCCeeeecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHH
Q 011105 273 NAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352 (493)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~ 352 (493)
.....++|||+|||+.+|+++|+++|++||.|..|+++++.. +.++|||||+|.+.++|.+|+
T Consensus 91 ----------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 91 ----------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp ----------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSHHHHHHHH
T ss_pred ----------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEECCHHHHHHHH
Confidence 001127899999999999999999999999999999999875 677999999999999999999
Q ss_pred HhcCCceec---CeEEEEEecC
Q 011105 353 KNTEKYEID---GQVLDCSLAK 371 (493)
Q Consensus 353 ~~l~~~~~~---g~~i~v~~a~ 371 (493)
..||+..+. +++|.|.||.
T Consensus 154 ~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 154 KAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHTTSCCCTTCSSCCEEEECC
T ss_pred HHhcCCcccCCCCCCeEEEecC
Confidence 999998776 4999999984
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1.8e-31 Score=233.52 Aligned_cols=166 Identities=20% Similarity=0.340 Sum_probs=143.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEe
Q 011105 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (493)
Q Consensus 115 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~ 194 (493)
.+...++|||+|||+++|+++|+++|..||.|.. .++.+..++.++|||||+|.+.++|.+|++ |++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4567899999999999999999999999998776 344455668899999999999999999995 99999999999998
Q ss_pred cccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCC
Q 011105 195 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 274 (493)
Q Consensus 195 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 274 (493)
++.....
T Consensus 87 ~~~~~~~------------------------------------------------------------------------- 93 (175)
T 1fje_B 87 KPKGRDS------------------------------------------------------------------------- 93 (175)
T ss_dssp CCCCSSC-------------------------------------------------------------------------
T ss_pred cCCCccc-------------------------------------------------------------------------
Confidence 7754211
Q ss_pred CeeeecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHh
Q 011105 275 PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354 (493)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 354 (493)
......++|||+|||+.+|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..
T Consensus 94 -------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 1fje_B 94 -------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEE 155 (175)
T ss_dssp -------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHH
T ss_pred -------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHH
Confidence 000123899999999999999999999999998777 44566799999999999999999999
Q ss_pred cCCceecCeEEEEEecCCC
Q 011105 355 TEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 355 l~~~~~~g~~i~v~~a~~~ 373 (493)
||+..|.|++|.|.|+.++
T Consensus 156 l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 156 KQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HTEEEETTEEEEEEECSSC
T ss_pred hCCCEECCeEEEEEecCCC
Confidence 9999999999999999886
No 12
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=1.8e-30 Score=231.96 Aligned_cols=183 Identities=19% Similarity=0.348 Sum_probs=148.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSI----G-------EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~----G-------~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i 186 (493)
.+++|||+|||+++|+++|+++|+.| | .|..+.+ ++++|||||+|.+.++|.+|| .||+..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 47899999999999999999999999 5 6666666 456899999999999999999 7999999
Q ss_pred cCceEEEecccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCC
Q 011105 187 KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 266 (493)
Q Consensus 187 ~g~~i~V~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 266 (493)
.|+.|.|.++.......-.. ...
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~---------------------------------~~~------------------------ 98 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMS---------------------------------ENP------------------------ 98 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSS---------------------------------SCS------------------------
T ss_pred cCceEEEeCCCCCCCCCCCc---------------------------------CCC------------------------
Confidence 99999998876432210000 000
Q ss_pred CcccCCCCCeeeecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHH
Q 011105 267 KFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346 (493)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~ 346 (493)
... .+...........++|||+|||+.+++++|+++|++||.|..|+++.++.++.++|||||+|.+.+
T Consensus 99 ~~~-----------~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~ 167 (198)
T 2yh0_A 99 SVY-----------VPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 167 (198)
T ss_dssp SCC-----------CTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSS
T ss_pred cCC-----------CCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHH
Confidence 000 000000011223489999999999999999999999999999999999888889999999999999
Q ss_pred HHHHHHHhcCCceecCeEEEEEecCCCCc
Q 011105 347 SAMKALKNTEKYEIDGQVLDCSLAKPQAD 375 (493)
Q Consensus 347 ~a~~a~~~l~~~~~~g~~i~v~~a~~~~~ 375 (493)
+|.+|+..||+..|.|++|.|.++.++..
T Consensus 168 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 168 VTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp HHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred HHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999998754
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=1.2e-30 Score=227.71 Aligned_cols=159 Identities=19% Similarity=0.403 Sum_probs=142.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSI----G-------EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~----G-------~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i 186 (493)
+.++|||+|||+++|+++|+++|++| | .|.++.+. +++|||||+|.+.++|.+|+ .+++..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 77777774 45789999999999999999 7999999
Q ss_pred cCceEEEecccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCC
Q 011105 187 KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 266 (493)
Q Consensus 187 ~g~~i~V~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 266 (493)
.|+.|.|.++.....
T Consensus 76 ~g~~i~v~~~~~~~~----------------------------------------------------------------- 90 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP----------------------------------------------------------------- 90 (172)
T ss_dssp TTEECEEECCSSCCC-----------------------------------------------------------------
T ss_pred cCceeeecCCcccCC-----------------------------------------------------------------
Confidence 999999976542110
Q ss_pred CcccCCCCCeeeecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHH
Q 011105 267 KFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346 (493)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~ 346 (493)
....++|||+|||+.+|+++|+++|++||.|..|.+++++.++.++|||||+|.+.+
T Consensus 91 -----------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~ 147 (172)
T 2g4b_A 91 -----------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 147 (172)
T ss_dssp -----------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTT
T ss_pred -----------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHH
Confidence 000279999999999999999999999999999999999888889999999999999
Q ss_pred HHHHHHHhcCCceecCeEEEEEecC
Q 011105 347 SAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 347 ~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
+|.+|+..||+..|.|++|.|.||.
T Consensus 148 ~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 148 VTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999984
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=6e-30 Score=228.00 Aligned_cols=195 Identities=19% Similarity=0.266 Sum_probs=143.4
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 118 HGSEVYLGGIP-HDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 118 ~~~~l~V~nLp-~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
.+++|||+||| +.+|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999875 4799999999999999999999999999999999988
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCe
Q 011105 197 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 276 (493)
Q Consensus 197 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 276 (493)
..... .|..... + .-+. ... .-.. ..... .|.....+ .
T Consensus 78 ~~~~~-----~p~~~~~--~-----~~~~-~~~-~~~~---~~~~~------r~~~~~~~-----~-------------- 115 (205)
T 3tyt_A 78 KQPAI-----MPGQSYG--L-----EDGS-CSY-KDFS---ESRNN------RFSTPEQA-----A-------------- 115 (205)
T ss_dssp SCSCC-----CCCSCCB--C-----TTSC-BSE-EECT---TCTTC------SCSSHHHH-----T--------------
T ss_pred cCCcc-----CCCcccc--c-----ccCC-ccc-cccC---CCccc------cccCcccc-----c--------------
Confidence 65432 1110000 0 0000 000 0000 00000 00000000 0
Q ss_pred eeecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcE--EEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHh
Q 011105 277 VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI--TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354 (493)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v--~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 354 (493)
........++|||+|||+.+|+++|+++|++||.| ..|+++.++ +.++|+|||+|.+.++|.+||..
T Consensus 116 ---------~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~ 184 (205)
T 3tyt_A 116 ---------KNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGF 184 (205)
T ss_dssp ---------TSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHH
T ss_pred ---------ccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHH
Confidence 00001223789999999999999999999999999 899998886 33469999999999999999999
Q ss_pred cCCceecCe----EEEEEec
Q 011105 355 TEKYEIDGQ----VLDCSLA 370 (493)
Q Consensus 355 l~~~~~~g~----~i~v~~a 370 (493)
||+..|.|+ ++.|+||
T Consensus 185 lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 185 LNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HTTCEECCSSSSSCEECEEE
T ss_pred hCCCCccCCCCCcceEEEec
Confidence 999999886 6777775
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=5.7e-29 Score=234.96 Aligned_cols=246 Identities=17% Similarity=0.236 Sum_probs=151.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLR----HFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i 191 (493)
....++|||+|||+++|+++|+ ++|+.||.|.+|+|++ +++++|||||+|.+.++|.+||+.||+..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4568999999999999999977 8999999999999886 47899999999999999999999999999999999
Q ss_pred EEecccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEee----CCHHH-HHHHHHHcCCC
Q 011105 192 KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY----YNHAC-AEYSRQKMSNP 266 (493)
Q Consensus 192 ~V~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f----~~~~~-a~~a~~~~~~~ 266 (493)
+|.++............. ..+......-..... ...................+.+.- ..... +......+.+.
T Consensus 83 ~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGT-FVERDRKREKRKPKS-QETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEeccCcchhhhhcCC-cccchhhhhhhhccc-cchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 999987654322111111 111000000000000 000000000000000000000000 00000 00000000000
Q ss_pred CcccC------CCCC-eeeec-------------CCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeC
Q 011105 267 KFKLD------DNAP-TVSWA-------------DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIP 326 (493)
Q Consensus 267 ~~~~~------~~~~-~~~~~-------------~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~ 326 (493)
..... .... ...+. .+...........++|||+|||..+|+++|+++|+.||.|..|+|+
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 00000 0000 00000 0000000122335889999999999999999999999999999999
Q ss_pred CCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceec-CeEEEEEecC
Q 011105 327 PAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID-GQVLDCSLAK 371 (493)
Q Consensus 327 ~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~a~ 371 (493)
.++ +|||||+|.+.++|.+|+..||+..|. |++|+|.|++
T Consensus 241 ~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 241 PGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 765 589999999999999999999999999 9999999986
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=9.4e-29 Score=225.56 Aligned_cols=194 Identities=20% Similarity=0.322 Sum_probs=148.4
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEe
Q 011105 116 PPHGSEVYLGGIPH-DASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (493)
Q Consensus 116 ~~~~~~l~V~nLp~-~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~ 194 (493)
...+++|||+|||+ ++|+++|+++|+.||.|.+|+|+.++ +|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45678999999999 99999999999999999999999874 6899999999999999999999999999999999
Q ss_pred cccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCC
Q 011105 195 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA 274 (493)
Q Consensus 195 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 274 (493)
++....... +...... ... ...|.. . .. .
T Consensus 106 ~a~~~~~~~----~~~~~~~------------------------~~~-----~~~~~~------------~-~~---~-- 134 (229)
T 2adc_A 106 LSKHQNVQL----PREGQED------------------------QGL-----TKDYGN------------S-PL---H-- 134 (229)
T ss_dssp CCSCCCCCC----CCSSSST------------------------TTT-----EEECTT------------C-SS---C--
T ss_pred EecCccccC----ccccccc------------------------ccc-----cccccc------------C-cc---c--
Confidence 887543210 0000000 000 000000 0 00 0
Q ss_pred CeeeecCCCC-cccccccccceEEEccCCCCCCHHHHHHHHhcCC-cEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHH
Q 011105 275 PTVSWADPRN-AESSAASQVKALYVKNLPKDITQDRLKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352 (493)
Q Consensus 275 ~~~~~~~~~~-~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~ 352 (493)
.+..+.. .........++|||+|||+.+++++|+++|+.|| .|..|+|+... +|||||+|.+.++|.+|+
T Consensus 135 ---~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-----~g~afV~f~~~~~A~~Ai 206 (229)
T 2adc_A 135 ---RFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQAL 206 (229)
T ss_dssp ---CCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS-----TTCEEEEESSHHHHHHHH
T ss_pred ---ccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC-----CcEEEEEECCHHHHHHHH
Confidence 0000000 0001122348999999999999999999999999 99999997642 689999999999999999
Q ss_pred HhcCCceec-CeEEEEEecCCC
Q 011105 353 KNTEKYEID-GQVLDCSLAKPQ 373 (493)
Q Consensus 353 ~~l~~~~~~-g~~i~v~~a~~~ 373 (493)
..||+..|. |++|+|.|++++
T Consensus 207 ~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 207 IDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHCCCccCCCCeEEEEEecCC
Confidence 999999999 999999999875
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=8.8e-29 Score=220.93 Aligned_cols=193 Identities=20% Similarity=0.326 Sum_probs=147.0
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 118 HGSEVYLGGIPH-DASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 118 ~~~~l~V~nLp~-~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
.+++|||+|||+ ++|+++|+++|+.||.|.+|+++.++ +|||||+|.+.++|.+|++.|++..|.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 368999999999 99999999999999999999998874 689999999999999999999999999999999988
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCe
Q 011105 197 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 276 (493)
Q Consensus 197 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 276 (493)
...... ++..... .....+ .|... ........
T Consensus 77 ~~~~~~----~~~~~~~------------------------~~~~~~-----~~~~~------------~~~r~~~~--- 108 (198)
T 1qm9_A 77 KHQNVQ----LPREGQE------------------------DQGLTK-----DYGNS------------PLHRFKKP--- 108 (198)
T ss_dssp CCCSCC----CSSSSSS------------------------SSSCEE-----ESSCC------------CTTSSSSC---
T ss_pred cCCCcC----CCCcCCc------------------------cccccc-----cccCC------------chhhccCc---
Confidence 754321 1100000 000000 00000 00000000
Q ss_pred eeecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCC-cEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 011105 277 VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355 (493)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l 355 (493)
............++|||+|||..+++++|+++|+.|| .|..|+|+.+. +|+|||+|.+.++|.+|+..|
T Consensus 109 -----~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l 178 (198)
T 1qm9_A 109 -----GSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDL 178 (198)
T ss_dssp -----CCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHH
T ss_pred -----cccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHh
Confidence 0000001112348999999999999999999999999 99999997753 689999999999999999999
Q ss_pred CCceec-CeEEEEEecCCC
Q 011105 356 EKYEID-GQVLDCSLAKPQ 373 (493)
Q Consensus 356 ~~~~~~-g~~i~v~~a~~~ 373 (493)
|+..|. |++|+|.|++++
T Consensus 179 ~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 179 HNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TSSCCSSCCSCCEEEECCC
T ss_pred cCCccCCCCeEEEEeeccc
Confidence 999999 999999999875
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=6.4e-29 Score=231.26 Aligned_cols=160 Identities=25% Similarity=0.405 Sum_probs=143.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|+.||.|..|+|.+ ++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 34568999999999999999999999999999999964 468999999999999999999999999999999876
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCC
Q 011105 196 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 275 (493)
Q Consensus 196 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 275 (493)
+.+
T Consensus 93 a~~----------------------------------------------------------------------------- 95 (261)
T 3sde_A 93 ATH----------------------------------------------------------------------------- 95 (261)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 531
Q ss_pred eeeecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 011105 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355 (493)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l 355 (493)
..+|||+|||+.+|+++|+++|+.||.|..|.|+.+ .++.++|||||+|.+.++|.+||..|
T Consensus 96 -----------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 96 -----------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp -----------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred -----------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 168999999999999999999999999999999999 46778999999999999999999999
Q ss_pred C-Cceec---CeEEEEEecCCCCcc
Q 011105 356 E-KYEID---GQVLDCSLAKPQADQ 376 (493)
Q Consensus 356 ~-~~~~~---g~~i~v~~a~~~~~~ 376 (493)
| +..+. +++|.|.++.+....
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCEESS
T ss_pred cCCeEEecCCCceEEEeeccccCcc
Confidence 5 44444 899999999987544
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.93 E-value=3.3e-25 Score=209.36 Aligned_cols=165 Identities=19% Similarity=0.356 Sum_probs=152.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
.+..++|||+|||+++|+++|+++|+.||.|..|+++.++.++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccc---------ccccccCCCCCC-CHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHHHcCC
Q 011105 196 AQAK---------HRLFIGNVPRNW-GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 265 (493)
Q Consensus 196 ~~~~---------~~l~v~~l~~~~-~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 265 (493)
+.+. .+|+|+|||..+ ++++|+.+|+.||. |..+.++.++ ++.++++|||+|.+.++|.+|+..|++
T Consensus 172 a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~-i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g 248 (284)
T 3smz_A 172 TDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHS-PTFCQLACGQ--DGQLKGFAVLEYETAEMAEEAQQQADG 248 (284)
T ss_dssp CCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSC-CSEEEEEECS--SCCEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCC-eEEEEEEECC--CCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 8754 479999999996 99999999999998 9999999874 688999999999999999999999998
Q ss_pred CCcccCCCCCeeeecCCCCc
Q 011105 266 PKFKLDDNAPTVSWADPRNA 285 (493)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~ 285 (493)
.. +.++.+.+.|+.+...
T Consensus 249 ~~--~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 249 LS--LGGSHLRVSFCAPGPP 266 (284)
T ss_dssp CE--ETTEECEEEECCSSSC
T ss_pred Cc--cCCeEEEEEEecCCCc
Confidence 54 5888999999987654
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.92 E-value=1e-24 Score=206.80 Aligned_cols=162 Identities=19% Similarity=0.338 Sum_probs=140.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIG-EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
...++|||+|||+++|+++|+++|+.|| .|..|+|+.++. +.++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4678999999999999999999999999 999999998876 88999999999999999999999999999999999998
Q ss_pred ccc-------------cccccccCCCCC-CCHHHHHHHHHhhCCCeeEEEEecCCCCCCCCcceEEEeeCCHHHHHHHHH
Q 011105 196 AQA-------------KHRLFIGNVPRN-WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261 (493)
Q Consensus 196 ~~~-------------~~~l~v~~l~~~-~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 261 (493)
+.+ ..+|||+|||.. +++++|+.+|+.||. |..+.++.++..++.+++||||+|.+.++|.+|+
T Consensus 194 a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 194 SNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGS-IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp CCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC-EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred CCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCC-eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 753 257999999999 999999999999998 9999999875445899999999999999999999
Q ss_pred HcCCCCcccCCCCCeeeecCCC
Q 011105 262 KMSNPKFKLDDNAPTVSWADPR 283 (493)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~ 283 (493)
.|++. .+.++.+.|.|+.++
T Consensus 272 ~l~g~--~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 QMNRS--LLGNREISVSLADKK 291 (292)
T ss_dssp GGTTE--EETTEEEEEEECCCC
T ss_pred HhcCC--EECCcEEEEEEecCC
Confidence 99884 577899999998764
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=2.4e-22 Score=171.94 Aligned_cols=84 Identities=25% Similarity=0.445 Sum_probs=80.0
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+.+|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.++.+
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 38999999999999999999999999999999999998999999999999999999999999999999999999999998
Q ss_pred CCcc
Q 011105 373 QADQ 376 (493)
Q Consensus 373 ~~~~ 376 (493)
+...
T Consensus 150 ~~~~ 153 (158)
T 2kn4_A 150 GRPP 153 (158)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7543
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=3.3e-21 Score=154.94 Aligned_cols=97 Identities=20% Similarity=0.388 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
...++|||+|||+++|+++|+++|++||.|.+|+|+.+. +.++|||||+|.+.++|.+||+.|++..|.|+.|.|.++
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 356789999999999999999999999999999999986 458999999999999999999999999999999999987
Q ss_pred ccc--------------ccccccCCCCCCCHHH
Q 011105 197 QAK--------------HRLFIGNVPRNWGEDD 215 (493)
Q Consensus 197 ~~~--------------~~l~v~~l~~~~~~~~ 215 (493)
.++ .+|||+|||+.+|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 81 KSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SCCCC----------------------------
T ss_pred CCccccccccccccCCCCceEeCCCCCCccccc
Confidence 642 3689999999988753
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=5.8e-21 Score=148.70 Aligned_cols=80 Identities=26% Similarity=0.488 Sum_probs=77.7
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+.+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.||+|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999986
No 24
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.84 E-value=2.5e-20 Score=157.76 Aligned_cols=139 Identities=16% Similarity=0.226 Sum_probs=112.1
Q ss_pred CCcceEEEEEeccHHHHHHHHHHh-CCCcccCceEEEecccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEecCC
Q 011105 158 GEAKGYAFVTFRTKELASQAIEEL-NSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDP 236 (493)
Q Consensus 158 g~~~g~afV~F~~~e~A~~Al~~l-~~~~i~g~~i~V~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~ 236 (493)
...+|+++|+|.+.++|.+|++.+ |+..|.| .|.+.++.............
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~--------------------------- 61 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHH--------------------------- 61 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSC---------------------------
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccc---------------------------
Confidence 467899999999999999999999 9999999 99998775432210000000
Q ss_pred CCCCCCcceEEEeeCCHHHHHHHHHHcCCCCcccCCCCCeeeecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhc
Q 011105 237 QNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAH 316 (493)
Q Consensus 237 ~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~ 316 (493)
............++|||+|||+.+|+++|+++|++
T Consensus 62 ---------------------------------------------~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~ 96 (150)
T 2i2y_A 62 ---------------------------------------------HHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGY 96 (150)
T ss_dssp ---------------------------------------------CCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHH
T ss_pred ---------------------------------------------cccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 00000011223489999999999999999999999
Q ss_pred CCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCCC
Q 011105 317 HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 374 (493)
Q Consensus 317 ~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~ 374 (493)
||.|..|+|+++ ++|||||+|.+.++|.+|+..||+..|.|++|+|.|+.++.
T Consensus 97 ~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 97 YGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred hCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999987 37999999999999999999999999999999999998863
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=146.30 Aligned_cols=83 Identities=34% Similarity=0.566 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
...+++|||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|++.||+..|.|++|+|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 011105 196 AQA 198 (493)
Q Consensus 196 ~~~ 198 (493)
+++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 875
No 26
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.83 E-value=6.5e-21 Score=188.42 Aligned_cols=85 Identities=20% Similarity=0.369 Sum_probs=80.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 291 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
...++|||+|||+.+|+++|+++|+.||.|+.|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34589999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCc
Q 011105 371 KPQAD 375 (493)
Q Consensus 371 ~~~~~ 375 (493)
.++..
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87644
No 27
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.83 E-value=1.3e-21 Score=176.76 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=78.4
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCC--cEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHG--KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
++|||+||++.+|+++|+++|+.|| .|..|+|++++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++.
T Consensus 69 ~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 69 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 7999999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 011105 372 PQA 374 (493)
Q Consensus 372 ~~~ 374 (493)
+..
T Consensus 149 ~~~ 151 (229)
T 3q2s_C 149 KQF 151 (229)
T ss_dssp HHH
T ss_pred CCc
Confidence 764
No 28
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-20 Score=143.88 Aligned_cols=83 Identities=19% Similarity=0.386 Sum_probs=77.5
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCC-cEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhc-CCceecCeEEEEEecC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT-EKYEIDGQVLDCSLAK 371 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l-~~~~~~g~~i~v~~a~ 371 (493)
++|||+|||+.+|+++|+++|++|| .|.+|+|++++.++.++|||||+|.+.++|.+||+.| ++..|.||+|+|.||.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 7999999999999999999999999 8999999999999999999999999999999999987 4667999999999999
Q ss_pred CCCcc
Q 011105 372 PQADQ 376 (493)
Q Consensus 372 ~~~~~ 376 (493)
++...
T Consensus 82 ~~~~~ 86 (91)
T 2lxi_A 82 PKPKI 86 (91)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87543
No 29
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.80 E-value=1.6e-19 Score=153.89 Aligned_cols=85 Identities=22% Similarity=0.380 Sum_probs=80.6
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.|+.
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcc
Q 011105 372 PQADQ 376 (493)
Q Consensus 372 ~~~~~ 376 (493)
+....
T Consensus 118 ~~~~~ 122 (156)
T 1h2v_Z 118 GFKEG 122 (156)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 86543
No 30
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=6.3e-19 Score=137.81 Aligned_cols=85 Identities=20% Similarity=0.354 Sum_probs=80.9
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+.+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.++.+
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 87 (99)
T 1whw_A 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTI 87 (99)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 48999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCccC
Q 011105 373 QADQK 377 (493)
Q Consensus 373 ~~~~~ 377 (493)
+....
T Consensus 88 ~~~~~ 92 (99)
T 1whw_A 88 KKEAS 92 (99)
T ss_dssp CSTTC
T ss_pred Ccccc
Confidence 86543
No 31
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=6.8e-20 Score=140.78 Aligned_cols=80 Identities=16% Similarity=0.343 Sum_probs=75.5
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCc--EEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCc----eecCeEEE
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGK--ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY----EIDGQVLD 366 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~--v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~----~~~g~~i~ 366 (493)
..+|||+|||+.+|+++|+++|++||. |.+|+|++++.++.+||||||+|.+.++|.+||+.||+. .|+||+|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 489999999999999999999999995 679999999999999999999999999999999999986 59999999
Q ss_pred EEecCC
Q 011105 367 CSLAKP 372 (493)
Q Consensus 367 v~~a~~ 372 (493)
|.||+.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999975
No 32
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=2.6e-19 Score=142.05 Aligned_cols=84 Identities=21% Similarity=0.305 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
++..++|||+|||+++|+++|+++|++||.|.+|+|+.++.|++++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8643
No 33
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=2.6e-19 Score=142.03 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=79.4
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+.+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.++..
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCc
Q 011105 373 QAD 375 (493)
Q Consensus 373 ~~~ 375 (493)
...
T Consensus 86 ~~~ 88 (110)
T 3s8s_A 86 GQQ 88 (110)
T ss_dssp THH
T ss_pred CcH
Confidence 644
No 34
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.1e-19 Score=136.78 Aligned_cols=84 Identities=27% Similarity=0.504 Sum_probs=80.1
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+.+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.++.+
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTE 84 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCcc
Q 011105 373 QADQ 376 (493)
Q Consensus 373 ~~~~ 376 (493)
+...
T Consensus 85 ~~~~ 88 (95)
T 2dnz_A 85 RLDG 88 (95)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 7553
No 35
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=1.4e-19 Score=149.52 Aligned_cols=126 Identities=19% Similarity=0.290 Sum_probs=84.1
Q ss_pred eEEEeeCCHHHHHHHHHHcCCCCcccCCCCCeeeecCCCCcccccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEE
Q 011105 245 FAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 324 (493)
Q Consensus 245 ~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~ 324 (493)
+.|++|.+...+..|+..+++....... ...+..+. ......++|||+|||+.+|+++|+++|+.||.|..|.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~---~~~~~~~~----~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~ 78 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG---SMSYGRPP----PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVY 78 (135)
T ss_dssp --------------------------------CCSCCSC----SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEE
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC---CCCcCCCC----CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE
Confidence 5566777777777777777664332211 12222222 2333458999999999999999999999999999999
Q ss_pred eCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCCCccC
Q 011105 325 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377 (493)
Q Consensus 325 i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~~ 377 (493)
|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.|++++....
T Consensus 79 i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 79 IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp CCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 99999889999999999999999999999999999999999999999875543
No 36
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=9.3e-19 Score=136.80 Aligned_cols=85 Identities=22% Similarity=0.452 Sum_probs=80.2
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+||. ||+..|.|++|+|.++.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECC
Confidence 34899999999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred CCCccC
Q 011105 372 PQADQK 377 (493)
Q Consensus 372 ~~~~~~ 377 (493)
++....
T Consensus 88 ~~~~~~ 93 (99)
T 2dgs_A 88 PRDSKS 93 (99)
T ss_dssp CCCCCC
T ss_pred CCcccC
Confidence 876543
No 37
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=1.9e-18 Score=139.04 Aligned_cols=87 Identities=22% Similarity=0.350 Sum_probs=81.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 291 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
...++|||+|||+.+++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 34589999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCccC
Q 011105 371 KPQADQK 377 (493)
Q Consensus 371 ~~~~~~~ 377 (493)
.++....
T Consensus 93 ~~~~~~~ 99 (115)
T 2dgo_A 93 TRKPPAP 99 (115)
T ss_dssp SCCCCCS
T ss_pred cCCCCCC
Confidence 9886544
No 38
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=138.00 Aligned_cols=87 Identities=23% Similarity=0.385 Sum_probs=81.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 291 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
...++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 34589999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCccC
Q 011105 371 KPQADQK 377 (493)
Q Consensus 371 ~~~~~~~ 377 (493)
.++....
T Consensus 93 ~~~~~~~ 99 (105)
T 1x5u_A 93 SAHNKNL 99 (105)
T ss_dssp TTTSCCC
T ss_pred CCCCcCC
Confidence 9876543
No 39
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=7.9e-20 Score=140.01 Aligned_cols=83 Identities=33% Similarity=0.536 Sum_probs=76.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHh-CCCcccCceEEEecc
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIG-EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL-NSCELKGKKIKCSAA 196 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l-~~~~i~g~~i~V~~~ 196 (493)
+.+|||+|||+++|+++|+++|++|| .|.+|+|++++.++.++|||||+|.+.++|.+||+.+ ++..|.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999999999999999999999999999999876 456799999999999
Q ss_pred ccccc
Q 011105 197 QAKHR 201 (493)
Q Consensus 197 ~~~~~ 201 (493)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 86543
No 40
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.1e-19 Score=138.01 Aligned_cols=86 Identities=27% Similarity=0.454 Sum_probs=81.3
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.++.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 34899999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCccC
Q 011105 372 PQADQK 377 (493)
Q Consensus 372 ~~~~~~ 377 (493)
++..+.
T Consensus 91 ~~~~~~ 96 (102)
T 2cqb_A 91 PMRIKE 96 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 886544
No 41
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.8e-19 Score=136.48 Aligned_cols=84 Identities=18% Similarity=0.279 Sum_probs=80.1
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEE-EeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v-~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
.++|||+|||+.+|+++|+++|+.||.|..| +|++++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.++.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 4899999999999999999999999999999 999998889999999999999999999999999999999999999999
Q ss_pred CCCcc
Q 011105 372 PQADQ 376 (493)
Q Consensus 372 ~~~~~ 376 (493)
++..+
T Consensus 85 ~~~~~ 89 (96)
T 1x5t_A 85 KKDSK 89 (96)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87654
No 42
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.3e-18 Score=137.88 Aligned_cols=85 Identities=28% Similarity=0.470 Sum_probs=79.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 291 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
...++|||+|||+.+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+||..|++ .|.|++|+|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 3458999999999999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred CCCCcc
Q 011105 371 KPQADQ 376 (493)
Q Consensus 371 ~~~~~~ 376 (493)
.+....
T Consensus 94 ~~~~~~ 99 (116)
T 2cqd_A 94 YLGAKP 99 (116)
T ss_dssp TTTCCC
T ss_pred ccCCCc
Confidence 876443
No 43
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.78 E-value=9.4e-19 Score=132.01 Aligned_cols=81 Identities=19% Similarity=0.305 Sum_probs=78.2
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
.+|||+|||+.+++++|+++|+.||.|..|.++.+..++.++|||||+|.+.++|.+|+..||+..|.|++|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999888999999999999999999999999999999999999999886
Q ss_pred C
Q 011105 374 A 374 (493)
Q Consensus 374 ~ 374 (493)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 44
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=137.72 Aligned_cols=85 Identities=26% Similarity=0.414 Sum_probs=80.6
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|.|.++.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 35899999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred CCCcc
Q 011105 372 PQADQ 376 (493)
Q Consensus 372 ~~~~~ 376 (493)
+....
T Consensus 92 ~~~~~ 96 (103)
T 2dnm_A 92 YGRRD 96 (103)
T ss_dssp SCCSC
T ss_pred cCCCC
Confidence 86544
No 45
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.5e-18 Score=137.54 Aligned_cols=87 Identities=21% Similarity=0.381 Sum_probs=81.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcC------CceecCeE
Q 011105 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE------KYEIDGQV 364 (493)
Q Consensus 291 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~------~~~~~g~~ 364 (493)
...++|||+|||+.+|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+||..|| +..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 345899999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EEEEecCCCCccC
Q 011105 365 LDCSLAKPQADQK 377 (493)
Q Consensus 365 i~v~~a~~~~~~~ 377 (493)
|+|.++.++....
T Consensus 93 l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 93 LKVDLAVTRDEAA 105 (111)
T ss_dssp EEEECCCCCCCCC
T ss_pred EEEEECCCCccCC
Confidence 9999999875544
No 46
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=2e-19 Score=138.19 Aligned_cols=81 Identities=26% Similarity=0.396 Sum_probs=75.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCC--eeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCc----ccCceE
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGE--VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE----LKGKKI 191 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~--v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~----i~g~~i 191 (493)
.-.||||+|||+++|+++|+++|++||. |.+|+|++++.|++++|||||+|.+.++|.+||+.||+.. |.||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3468999999999999999999999995 6799999999999999999999999999999999999874 899999
Q ss_pred EEecccc
Q 011105 192 KCSAAQA 198 (493)
Q Consensus 192 ~V~~~~~ 198 (493)
.|.++++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999864
No 47
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=137.45 Aligned_cols=86 Identities=24% Similarity=0.477 Sum_probs=81.2
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.|+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 93 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence 45899999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCccC
Q 011105 372 PQADQK 377 (493)
Q Consensus 372 ~~~~~~ 377 (493)
++....
T Consensus 94 ~~~~~~ 99 (103)
T 2cq0_A 94 PSTNSG 99 (103)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 875543
No 48
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-18 Score=136.71 Aligned_cols=87 Identities=23% Similarity=0.424 Sum_probs=81.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCC-CCCCCcccEEEEEeCCHHHHHHHHHhc-CCceecCeEEEEE
Q 011105 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA-KPGQERSRYGFVHFAERSSAMKALKNT-EKYEIDGQVLDCS 368 (493)
Q Consensus 291 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~~~~~g~~fV~f~~~~~a~~a~~~l-~~~~~~g~~i~v~ 368 (493)
...++|||+|||+.+|+++|+++|+.||.|..|+|+++ +.++.++|||||+|.+.++|.+||..| |+..|.|++|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 34589999999999999999999999999999999999 788888999999999999999999999 9999999999999
Q ss_pred ecCCCCccC
Q 011105 369 LAKPQADQK 377 (493)
Q Consensus 369 ~a~~~~~~~ 377 (493)
|+.++....
T Consensus 93 ~a~~~~~~~ 101 (107)
T 2cph_A 93 WADSEVTVQ 101 (107)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 999876543
No 49
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.5e-19 Score=137.89 Aligned_cols=86 Identities=24% Similarity=0.443 Sum_probs=81.2
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.++.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccC
Q 011105 372 PQADQK 377 (493)
Q Consensus 372 ~~~~~~ 377 (493)
++....
T Consensus 91 ~~~~~~ 96 (102)
T 1x5s_A 91 KSSDNR 96 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 50
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=138.44 Aligned_cols=83 Identities=22% Similarity=0.427 Sum_probs=78.6
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+.+|+++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..||+..|.|++|+|.++.+
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 4899999999999999999999999999999999998 788899999999999999999999999999999999999998
Q ss_pred CCcc
Q 011105 373 QADQ 376 (493)
Q Consensus 373 ~~~~ 376 (493)
+...
T Consensus 86 ~~~~ 89 (116)
T 2fy1_A 86 PSFQ 89 (116)
T ss_dssp SSCS
T ss_pred CCCC
Confidence 7554
No 51
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.77 E-value=1.3e-18 Score=140.05 Aligned_cols=86 Identities=21% Similarity=0.404 Sum_probs=81.3
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.|+.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 35899999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCccC
Q 011105 372 PQADQK 377 (493)
Q Consensus 372 ~~~~~~ 377 (493)
++..+.
T Consensus 104 ~~~~~~ 109 (115)
T 2cpz_A 104 SKNDSK 109 (115)
T ss_dssp CSCCCC
T ss_pred CCCcCC
Confidence 886543
No 52
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=133.10 Aligned_cols=81 Identities=21% Similarity=0.341 Sum_probs=76.8
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.|+.+
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 38999999999999999999999999999999999988899999999999999999999999999999999999999987
Q ss_pred C
Q 011105 373 Q 373 (493)
Q Consensus 373 ~ 373 (493)
+
T Consensus 86 k 86 (87)
T 3bs9_A 86 K 86 (87)
T ss_dssp -
T ss_pred C
Confidence 5
No 53
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=7.7e-19 Score=150.88 Aligned_cols=130 Identities=12% Similarity=0.177 Sum_probs=80.5
Q ss_pred EeeCCHHHHHHHHHHcCCCCcccCCCCCeeeecCCC----------------CcccccccccceEEEccCCCCCCHHHHH
Q 011105 248 IEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR----------------NAESSAASQVKALYVKNLPKDITQDRLK 311 (493)
Q Consensus 248 v~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~v~nl~~~~t~~~l~ 311 (493)
.+|....++..++..+........++.....+.... ..........++|||+|||+.+|+++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 566777777777777776555444444433332110 0011222335789999999999999999
Q ss_pred HHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCCCccC
Q 011105 312 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377 (493)
Q Consensus 312 ~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~~ 377 (493)
++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|.|.|+.++..+.
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999998876543
No 54
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=144.03 Aligned_cols=88 Identities=26% Similarity=0.441 Sum_probs=82.1
Q ss_pred cccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q 011105 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (493)
Q Consensus 289 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 368 (493)
.....++|||+|||+.+|+++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 33446899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcc
Q 011105 369 LAKPQADQ 376 (493)
Q Consensus 369 ~a~~~~~~ 376 (493)
++.++..+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99987554
No 55
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=2.4e-18 Score=133.62 Aligned_cols=82 Identities=18% Similarity=0.437 Sum_probs=79.2
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
++|||+|||+.+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++.++
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence 79999999999999999999999999999999999998999999999999999999999999999999999999999987
Q ss_pred Cc
Q 011105 374 AD 375 (493)
Q Consensus 374 ~~ 375 (493)
..
T Consensus 83 ~~ 84 (96)
T 2x1f_A 83 DI 84 (96)
T ss_dssp SG
T ss_pred CC
Confidence 54
No 56
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=134.66 Aligned_cols=83 Identities=16% Similarity=0.394 Sum_probs=78.5
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+|+++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+|+..||+..|.|++|+|.++.
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 34899999999999999999999999999999999998 77889999999999999999999999999999999999998
Q ss_pred CCCc
Q 011105 372 PQAD 375 (493)
Q Consensus 372 ~~~~ 375 (493)
++..
T Consensus 95 ~~~~ 98 (100)
T 2do4_A 95 SGPS 98 (100)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8754
No 57
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.6e-18 Score=134.69 Aligned_cols=84 Identities=21% Similarity=0.440 Sum_probs=78.8
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCC-CCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG-QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
..++|||+|||+.+++++|+++|+.|| |..|.|+.++.+ +.++|||||+|.+.++|.+|| .||+..|.|++|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 348999999999999999999999999 999999999987 888999999999999999999 89999999999999999
Q ss_pred CCCCccC
Q 011105 371 KPQADQK 377 (493)
Q Consensus 371 ~~~~~~~ 377 (493)
.++....
T Consensus 92 ~~~~~~~ 98 (104)
T 1wi8_A 92 DQAQDKD 98 (104)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 9876543
No 58
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=1.7e-18 Score=131.27 Aligned_cols=79 Identities=28% Similarity=0.474 Sum_probs=76.3
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.||+
T Consensus 7 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 7 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp SSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4899999999999999999999999999999999998889999999999999999999999999999999999999985
No 59
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=135.29 Aligned_cols=85 Identities=27% Similarity=0.435 Sum_probs=79.0
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCC---CCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP---GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 369 (493)
.++|||+|||+.+|+++|+++|+.||.|..|.|+.++. ++.++|||||+|.+.++|.+||..||+..|.|++|.|.+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRI 84 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 38999999999999999999999999999999998876 557899999999999999999999999999999999999
Q ss_pred cCCCCccC
Q 011105 370 AKPQADQK 377 (493)
Q Consensus 370 a~~~~~~~ 377 (493)
+.++....
T Consensus 85 a~~~~~~~ 92 (98)
T 2cpf_A 85 SERATKPA 92 (98)
T ss_dssp SSCSSCCC
T ss_pred ccCCCCCC
Confidence 98875543
No 60
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-18 Score=133.09 Aligned_cols=82 Identities=24% Similarity=0.307 Sum_probs=78.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 291 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 34589999999999999999999999999999999999998899999999999999999999999999999999999998
Q ss_pred CC
Q 011105 371 KP 372 (493)
Q Consensus 371 ~~ 372 (493)
++
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 61
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=1.2e-18 Score=139.83 Aligned_cols=81 Identities=22% Similarity=0.402 Sum_probs=75.1
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
.+|||+|||+.+|+++|+++|+.||.|.+|+|++++. .++|||||+|.+.++|.+||..||+..|.|++|.|.++.++
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 6899999999999999999999999999999998864 36899999999999999999999999999999999999886
Q ss_pred Ccc
Q 011105 374 ADQ 376 (493)
Q Consensus 374 ~~~ 376 (493)
..+
T Consensus 84 ~~~ 86 (115)
T 4f25_A 84 KER 86 (115)
T ss_dssp CC-
T ss_pred ccc
Confidence 543
No 62
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=1.6e-18 Score=139.56 Aligned_cols=105 Identities=15% Similarity=0.301 Sum_probs=95.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+..+++|||+|||+++|+++|+++|+.||.|.+|.|+.+ +.++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999976 45699999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHhhCC
Q 011105 196 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGP 225 (493)
Q Consensus 196 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 225 (493)
+.+.... .+++...++++|..+|+.+|.
T Consensus 82 a~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF--QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT--TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh--hhhhHhHhHHHHHHHHHHhCC
Confidence 9876543 678888899999999999985
No 63
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.7e-18 Score=132.05 Aligned_cols=80 Identities=28% Similarity=0.470 Sum_probs=77.0
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.||+
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 35899999999999999999999999999999999999989999999999999999999999999999999999999985
No 64
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=2.5e-18 Score=136.23 Aligned_cols=87 Identities=20% Similarity=0.357 Sum_probs=81.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcee---cCeEEEE
Q 011105 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI---DGQVLDC 367 (493)
Q Consensus 291 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~---~g~~i~v 367 (493)
...++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||..||+..+ .|++|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 3458999999999999999999999999999999999999999999999999999999999999999988 8999999
Q ss_pred EecCCCCccC
Q 011105 368 SLAKPQADQK 377 (493)
Q Consensus 368 ~~a~~~~~~~ 377 (493)
.++.++..+.
T Consensus 91 ~~a~~~~~~~ 100 (106)
T 2dgp_A 91 KPADSESRGG 100 (106)
T ss_dssp EECCCCSCCC
T ss_pred EECCcccccC
Confidence 9999875543
No 65
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=132.97 Aligned_cols=85 Identities=31% Similarity=0.625 Sum_probs=80.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+..+++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.++.
T Consensus 82 a~~~~ 86 (95)
T 2dnz_A 82 VTERL 86 (95)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 87653
No 66
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=3.5e-18 Score=134.55 Aligned_cols=84 Identities=23% Similarity=0.317 Sum_probs=78.7
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+++++|+++|+.|| |..|+|++++.++.++|||||+|.+.++|.+|| .||+..|.|++|+|.++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEec
Confidence 358999999999999999999999997 999999999999999999999999999999999 899999999999999999
Q ss_pred CCCccC
Q 011105 372 PQADQK 377 (493)
Q Consensus 372 ~~~~~~ 377 (493)
++....
T Consensus 92 ~~~~~~ 97 (103)
T 2dng_A 92 GRKQDK 97 (103)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 875543
No 67
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=5.2e-19 Score=138.21 Aligned_cols=82 Identities=20% Similarity=0.241 Sum_probs=78.6
Q ss_pred cceEEEccCCC------CCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecC-eEE
Q 011105 293 VKALYVKNLPK------DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG-QVL 365 (493)
Q Consensus 293 ~~~l~v~nl~~------~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g-~~i 365 (493)
.++|||+|||+ .+++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+||..||+..|.| ++|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 38999999999 99999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEecCCCC
Q 011105 366 DCSLAKPQA 374 (493)
Q Consensus 366 ~v~~a~~~~ 374 (493)
+|.++.++.
T Consensus 86 ~V~~a~~~~ 94 (100)
T 3ns6_A 86 FLYTMKDVE 94 (100)
T ss_dssp EEEESHHHH
T ss_pred EEEECchhh
Confidence 999998754
No 68
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=135.76 Aligned_cols=86 Identities=30% Similarity=0.474 Sum_probs=79.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 291 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
...++|||+|||+.+|+++|+++|+.||.|..|.|+.+ ++.++|||||+|.+.++|.+||..||+..|.|++|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 34589999999999999999999999999999999988 6777999999999999999999999999999999999999
Q ss_pred CCCCccCC
Q 011105 371 KPQADQKT 378 (493)
Q Consensus 371 ~~~~~~~~ 378 (493)
.++..+..
T Consensus 91 ~~~~~~~~ 98 (103)
T 2d9p_A 91 QRKEERQS 98 (103)
T ss_dssp SSCCCCCC
T ss_pred cccccCCC
Confidence 98866543
No 69
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=130.87 Aligned_cols=83 Identities=25% Similarity=0.454 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
...++|||+|||+++|+++|+++|++||.|.+|+++.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35689999999999999999999999999999999999989999999999999999999999999999999999999988
Q ss_pred ccc
Q 011105 197 QAK 199 (493)
Q Consensus 197 ~~~ 199 (493)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 753
No 70
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.7e-18 Score=131.76 Aligned_cols=81 Identities=23% Similarity=0.361 Sum_probs=76.2
Q ss_pred cceEEEccCCCCCCHHHHH----HHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q 011105 293 VKALYVKNLPKDITQDRLK----ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 368 (493)
.++|||+|||+.+++++|+ ++|++||.|..|+|+.++.+ +|||||+|.+.++|.+||..||+..|.|++|+|.
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4899999999999999999 99999999999999999876 7899999999999999999999999999999999
Q ss_pred ecCCCCcc
Q 011105 369 LAKPQADQ 376 (493)
Q Consensus 369 ~a~~~~~~ 376 (493)
++.++...
T Consensus 86 ~a~~~~~~ 93 (96)
T 2dgx_A 86 LATGASGP 93 (96)
T ss_dssp ECCCSSCC
T ss_pred EcCCCCCC
Confidence 99887543
No 71
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8e-18 Score=132.49 Aligned_cols=84 Identities=29% Similarity=0.414 Sum_probs=77.7
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+++++|+++|++||.|..|+|++++.+ ++|||||+|.+.++|.+||..||+..|.|++|+|.|+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 3589999999999999999999999999999999998655 48999999999999999999999999999999999999
Q ss_pred CCCccC
Q 011105 372 PQADQK 377 (493)
Q Consensus 372 ~~~~~~ 377 (493)
++..+.
T Consensus 92 ~~~~~~ 97 (103)
T 2cqi_A 92 TPSSQK 97 (103)
T ss_dssp CTTCCC
T ss_pred CCcccc
Confidence 876543
No 72
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-18 Score=137.40 Aligned_cols=85 Identities=22% Similarity=0.326 Sum_probs=80.4
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEE--------EEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCe
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKIT--------KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 363 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~ 363 (493)
..++|||+|||+.+|+++|+++|+.||.|. .|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS 93 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC
Confidence 458999999999999999999999999999 699999988999999999999999999999999999999999
Q ss_pred EEEEEecCCCCcc
Q 011105 364 VLDCSLAKPQADQ 376 (493)
Q Consensus 364 ~i~v~~a~~~~~~ 376 (493)
+|+|.++.++...
T Consensus 94 ~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 94 KLKVSLARKKPPM 106 (113)
T ss_dssp ECEEECSSCCCCS
T ss_pred EEEEEECCCCCCC
Confidence 9999999987654
No 73
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=3.1e-18 Score=129.13 Aligned_cols=81 Identities=21% Similarity=0.449 Sum_probs=77.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecccc
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~ 198 (493)
+++|||+|||+++|+++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c
Q 011105 199 K 199 (493)
Q Consensus 199 ~ 199 (493)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 74
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.76 E-value=4e-18 Score=135.98 Aligned_cols=84 Identities=18% Similarity=0.299 Sum_probs=80.0
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|++|.|.|+.
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 104 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCc
Q 011105 372 PQAD 375 (493)
Q Consensus 372 ~~~~ 375 (493)
++..
T Consensus 105 ~~~~ 108 (110)
T 1oo0_B 105 VKGP 108 (110)
T ss_dssp ESSC
T ss_pred cCCC
Confidence 8754
No 75
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=2.4e-18 Score=140.92 Aligned_cols=85 Identities=15% Similarity=0.262 Sum_probs=80.6
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.|+.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 35899999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred CCCcc
Q 011105 372 PQADQ 376 (493)
Q Consensus 372 ~~~~~ 376 (493)
++...
T Consensus 101 ~~~~~ 105 (126)
T 3ex7_B 101 VRGPP 105 (126)
T ss_dssp ESSSC
T ss_pred CCCCC
Confidence 87554
No 76
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9e-18 Score=132.21 Aligned_cols=85 Identities=26% Similarity=0.411 Sum_probs=78.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 291 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
...++|||+|||+.+|+++|+++|+.||.|..|+|+.+..+ ++|||||+|.+.++|.+||..||+..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 34589999999999999999999999999999999998754 6899999999999999999999999999999999999
Q ss_pred CCCCccC
Q 011105 371 KPQADQK 377 (493)
Q Consensus 371 ~~~~~~~ 377 (493)
.++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2cq3_A 91 TARVMTN 97 (103)
T ss_dssp CSSCCCC
T ss_pred ccCCCCC
Confidence 9886543
No 77
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=3.3e-19 Score=136.60 Aligned_cols=83 Identities=20% Similarity=0.238 Sum_probs=72.9
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCC--cEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHG--KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
.+|||+|||+.+|+++|+++|+.|| .|..|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCcc
Q 011105 372 PQADQ 376 (493)
Q Consensus 372 ~~~~~ 376 (493)
+....
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 87543
No 78
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=1.2e-18 Score=133.40 Aligned_cols=80 Identities=21% Similarity=0.475 Sum_probs=72.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 120 SEVYLGGIPHDASDDDLRHFCKSIG--EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
.+|||+|||+++|+++|+++|++|| .|.+|+|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999887
Q ss_pred cc
Q 011105 198 AK 199 (493)
Q Consensus 198 ~~ 199 (493)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 64
No 79
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=3e-18 Score=125.97 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=69.5
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
+..|||+||++.+|+++|+++|.+||+|.++++.. +||||||+|.+.++|.+|++.||+..|.||+|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 37899999999999999999999999999999976 37999999999999999999999999999999999995
No 80
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=4.6e-18 Score=134.42 Aligned_cols=85 Identities=18% Similarity=0.265 Sum_probs=79.3
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecC---eEEEEE
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG---QVLDCS 368 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g---~~i~v~ 368 (493)
..++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+||..||+..|.+ ++|+|.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 35899999999999999999999999999999999988 67779999999999999999999999999998 999999
Q ss_pred ecCCCCccC
Q 011105 369 LAKPQADQK 377 (493)
Q Consensus 369 ~a~~~~~~~ 377 (493)
|+.++..+.
T Consensus 93 ~a~~~~~~~ 101 (105)
T 2dnh_A 93 FADTDKESG 101 (105)
T ss_dssp ESCSSCCCS
T ss_pred ECccCcccC
Confidence 999886654
No 81
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.75 E-value=2.8e-18 Score=130.07 Aligned_cols=82 Identities=28% Similarity=0.532 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45779999999999999999999999999999999999988999999999999999999999999999999999999987
Q ss_pred cc
Q 011105 196 AQ 197 (493)
Q Consensus 196 ~~ 197 (493)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 82
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=1.2e-18 Score=157.39 Aligned_cols=83 Identities=20% Similarity=0.466 Sum_probs=77.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIG--EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
..++|||+|||+++|+++|+++|++|| .|.+|+|+.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+....
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 87543
No 83
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=132.80 Aligned_cols=79 Identities=15% Similarity=0.275 Sum_probs=72.7
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcC--CceecCeEEEEEec
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLA 370 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~a 370 (493)
.++|||+|||+.+|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+..|+ +..|.|++|+|.|+
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 489999999999999999999999999999999976 6999999999999999999886 47899999999999
Q ss_pred CCCCccC
Q 011105 371 KPQADQK 377 (493)
Q Consensus 371 ~~~~~~~ 377 (493)
+++....
T Consensus 90 ~~~~~~~ 96 (105)
T 1sjq_A 90 NHKELKT 96 (105)
T ss_dssp SSSSCCC
T ss_pred CCCCCCc
Confidence 9876544
No 84
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.9e-18 Score=133.25 Aligned_cols=86 Identities=21% Similarity=0.382 Sum_probs=81.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cccccc
Q 011105 196 AQAKHR 201 (493)
Q Consensus 196 ~~~~~~ 201 (493)
+.++..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987644
No 85
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.7e-18 Score=136.99 Aligned_cols=86 Identities=22% Similarity=0.436 Sum_probs=80.5
Q ss_pred ccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q 011105 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (493)
Q Consensus 290 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 369 (493)
....++|||+|||+.+|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+||.. ++..|.|++|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34458999999999999999999999999999999999999999999999999999999999997 99999999999999
Q ss_pred cCCCCcc
Q 011105 370 AKPQADQ 376 (493)
Q Consensus 370 a~~~~~~ 376 (493)
+.++...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9988554
No 86
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-18 Score=135.59 Aligned_cols=84 Identities=15% Similarity=0.266 Sum_probs=79.8
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|++|.|.++.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCc
Q 011105 372 PQAD 375 (493)
Q Consensus 372 ~~~~ 375 (493)
++..
T Consensus 102 ~~~~ 105 (106)
T 1p27_B 102 VRGP 105 (106)
T ss_dssp ESSC
T ss_pred CCCC
Confidence 8643
No 87
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=2.3e-18 Score=133.71 Aligned_cols=84 Identities=31% Similarity=0.650 Sum_probs=80.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecccc
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~ 198 (493)
+++|||+|||+++++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccc
Q 011105 199 KHRL 202 (493)
Q Consensus 199 ~~~l 202 (493)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 6543
No 88
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=134.05 Aligned_cols=83 Identities=18% Similarity=0.255 Sum_probs=77.5
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+.+++++|+++|+.||.|..|.|+.++. +.++|||||+|.+.++|.+||..||+..|.|++|.|.++..
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 48999999999999999999999999999999999884 77799999999999999999999999999999999999987
Q ss_pred CCcc
Q 011105 373 QADQ 376 (493)
Q Consensus 373 ~~~~ 376 (493)
...+
T Consensus 94 ~~~~ 97 (114)
T 2do0_A 94 ALPK 97 (114)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6443
No 89
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.75 E-value=3.4e-18 Score=130.52 Aligned_cols=83 Identities=25% Similarity=0.423 Sum_probs=77.5
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCC-cccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE-RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~-~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
.++|||+|||+.+|+++|+++|++||.|..|.|+.+..++. ++|||||+|.+.++|.+|+..||+..|.|+.|+|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 38999999999999999999999999999999999887655 79999999999999999999999999999999999998
Q ss_pred CCCc
Q 011105 372 PQAD 375 (493)
Q Consensus 372 ~~~~ 375 (493)
++..
T Consensus 84 ~~~~ 87 (88)
T 4a8x_A 84 APWP 87 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 90
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6.4e-18 Score=132.00 Aligned_cols=84 Identities=27% Similarity=0.648 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||+ |++..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.++.
T Consensus 86 a~~~~ 90 (99)
T 2dgs_A 86 AEPRD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 87654
No 91
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.4e-18 Score=131.62 Aligned_cols=82 Identities=35% Similarity=0.568 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
++..++|||+|||+++++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cc
Q 011105 196 AQ 197 (493)
Q Consensus 196 ~~ 197 (493)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 92
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.8e-18 Score=131.73 Aligned_cols=83 Identities=28% Similarity=0.468 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+...++|||+|||+++|+++|+++|+.||.|..|.|+.++.+++++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 011105 196 AQA 198 (493)
Q Consensus 196 ~~~ 198 (493)
+..
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 753
No 93
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4e-18 Score=134.78 Aligned_cols=86 Identities=24% Similarity=0.433 Sum_probs=80.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 291 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
...++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||.. |+..|.|++|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 3458999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred CCCCccC
Q 011105 371 KPQADQK 377 (493)
Q Consensus 371 ~~~~~~~ 377 (493)
.++....
T Consensus 93 ~~~~~~~ 99 (105)
T 2dh8_A 93 TPRGMQP 99 (105)
T ss_dssp CCSSCCT
T ss_pred cCCCCCC
Confidence 9876543
No 94
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=134.77 Aligned_cols=84 Identities=21% Similarity=0.312 Sum_probs=79.0
Q ss_pred cceEEEccCCCCCCHHHHHHHHhc-CCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCce-ecCeEEEEEec
Q 011105 293 VKALYVKNLPKDITQDRLKELFAH-HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE-IDGQVLDCSLA 370 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~-~~g~~i~v~~a 370 (493)
.++|||+|||+.+|+++|+++|+. ||.|..|+|+.+. ++.++|||||+|.+.++|.+||..||+.. |.|++|.|.++
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 9 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 489999999999999999999999 9999999999998 78889999999999999999999999999 99999999999
Q ss_pred CCCCccC
Q 011105 371 KPQADQK 377 (493)
Q Consensus 371 ~~~~~~~ 377 (493)
.++..+.
T Consensus 88 ~~~~~~~ 94 (104)
T 2dhg_A 88 IPKASRV 94 (104)
T ss_dssp CCCCSCC
T ss_pred cCCCcCC
Confidence 8875543
No 95
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=135.29 Aligned_cols=83 Identities=25% Similarity=0.460 Sum_probs=79.4
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.++.
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 104 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVT 104 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcc
Confidence 35899999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred CCC
Q 011105 372 PQA 374 (493)
Q Consensus 372 ~~~ 374 (493)
++.
T Consensus 105 ~k~ 107 (108)
T 2jrs_A 105 ERT 107 (108)
T ss_dssp SSC
T ss_pred cCC
Confidence 874
No 96
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=9.4e-19 Score=136.71 Aligned_cols=83 Identities=16% Similarity=0.263 Sum_probs=78.9
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccC-ce
Q 011105 118 HGSEVYLGGIPH------DASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG-KK 190 (493)
Q Consensus 118 ~~~~l~V~nLp~------~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g-~~ 190 (493)
.+++|||+|||+ ++++++|+++|++||.|.+|+|+.++.|++++|||||+|.+.++|.+||+.||+..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEecccccc
Q 011105 191 IKCSAAQAKH 200 (493)
Q Consensus 191 i~V~~~~~~~ 200 (493)
|+|.++.+..
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999987643
No 97
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.3e-18 Score=133.84 Aligned_cols=85 Identities=22% Similarity=0.545 Sum_probs=80.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.+..
T Consensus 89 a~~~~ 93 (102)
T 1x5s_A 89 AGKSS 93 (102)
T ss_dssp EECCC
T ss_pred CCCCC
Confidence 87643
No 98
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.75 E-value=7e-18 Score=131.74 Aligned_cols=84 Identities=23% Similarity=0.418 Sum_probs=79.4
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCc
Q 011105 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTE--------VRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE 185 (493)
Q Consensus 114 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~ 185 (493)
..+...++|||+|||+++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|.+|++.||+..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34667899999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ccCceEEEeccc
Q 011105 186 LKGKKIKCSAAQ 197 (493)
Q Consensus 186 i~g~~i~V~~~~ 197 (493)
|.|+.|+|.+++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999998763
No 99
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.2e-18 Score=138.38 Aligned_cols=86 Identities=16% Similarity=0.290 Sum_probs=80.5
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 291 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
...++|||+|||+.+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|| .||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34589999999999999999999999999999999999998999999999999999999999 89999999999999999
Q ss_pred CCCCccC
Q 011105 371 KPQADQK 377 (493)
Q Consensus 371 ~~~~~~~ 377 (493)
.++..+.
T Consensus 102 ~~~~~~~ 108 (114)
T 2cq4_A 102 QAEKNRL 108 (114)
T ss_dssp HHHHHHH
T ss_pred CCCccCC
Confidence 8875543
No 100
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=8.5e-18 Score=131.56 Aligned_cols=83 Identities=24% Similarity=0.584 Sum_probs=78.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|+.||.|..|+|+.++ +++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+.++
T Consensus 93 a~~~ 96 (100)
T 2do4_A 93 SNSG 96 (100)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 101
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.7e-18 Score=133.92 Aligned_cols=87 Identities=29% Similarity=0.473 Sum_probs=81.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEe
Q 011105 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (493)
Q Consensus 115 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~ 194 (493)
.....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ccccccc
Q 011105 195 AAQAKHR 201 (493)
Q Consensus 195 ~~~~~~~ 201 (493)
++.+...
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9976543
No 102
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.74 E-value=5.2e-18 Score=145.71 Aligned_cols=84 Identities=26% Similarity=0.442 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+.+|+++|+.+|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+..+
T Consensus 149 a~~~ 152 (165)
T 1rk8_A 149 CFVK 152 (165)
T ss_dssp SEEC
T ss_pred ecCC
Confidence 8754
No 103
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.1e-18 Score=134.19 Aligned_cols=85 Identities=20% Similarity=0.446 Sum_probs=80.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.++.
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87653
No 104
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=5.3e-18 Score=136.41 Aligned_cols=85 Identities=22% Similarity=0.473 Sum_probs=80.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|+.||.|..|+|+.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.++.
T Consensus 102 a~~~~ 106 (115)
T 2cpz_A 102 KRSKN 106 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 87654
No 105
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=7e-18 Score=129.06 Aligned_cols=79 Identities=18% Similarity=0.356 Sum_probs=76.5
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
++|||+|||+.+|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|+ .||+..|.|++|+|.+++++
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 89999999999999999999999999999999999988999999999999999999999 89999999999999999875
No 106
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=6.4e-18 Score=129.40 Aligned_cols=77 Identities=21% Similarity=0.316 Sum_probs=70.7
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCce--ecCeEEEEEe
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE--IDGQVLDCSL 369 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~--~~g~~i~v~~ 369 (493)
.+++|||+|||+.+|+++|+++|++||.|.+|++++. ||||||+|.+.++|.+|+..|++.. |.||+|.|.|
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 3489999999999999999999999999999999864 6899999999999999999998765 7899999999
Q ss_pred cCCCC
Q 011105 370 AKPQA 374 (493)
Q Consensus 370 a~~~~ 374 (493)
++++.
T Consensus 94 S~~k~ 98 (100)
T 3r27_A 94 STSQK 98 (100)
T ss_dssp CSCSC
T ss_pred ccccc
Confidence 98764
No 107
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-17 Score=131.73 Aligned_cols=81 Identities=23% Similarity=0.453 Sum_probs=74.6
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+|+++|+++|++||.|..|.|..+. .++|||||+|.+.++|.+||..||+..|.|++|+|.|++
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR---GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS---SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 45899999999999999999999999999999997653 368999999999999999999999999999999999998
Q ss_pred CCCc
Q 011105 372 PQAD 375 (493)
Q Consensus 372 ~~~~ 375 (493)
++..
T Consensus 98 ~~~~ 101 (109)
T 1x4a_A 98 SGRG 101 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8644
No 108
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=4e-18 Score=134.22 Aligned_cols=84 Identities=23% Similarity=0.378 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+...
T Consensus 90 a~~~ 93 (103)
T 2dnm_A 90 ARYG 93 (103)
T ss_dssp CSSC
T ss_pred CCcC
Confidence 8754
No 109
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=6.3e-18 Score=133.89 Aligned_cols=84 Identities=29% Similarity=0.606 Sum_probs=79.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+...++|||+|||+.+|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+.++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8754
No 110
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.9e-18 Score=133.26 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=79.4
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEE-EEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeE----EE
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKIT-KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV----LD 366 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~----i~ 366 (493)
..++|||+|||+.+++++|+++|++||.|. .|+|++++.++.++|||||+|.+.++|.+|+..||+..|.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 348999999999999999999999999999 9999999999999999999999999999999999999999999 99
Q ss_pred EEecCCCCc
Q 011105 367 CSLAKPQAD 375 (493)
Q Consensus 367 v~~a~~~~~ 375 (493)
|.|+++...
T Consensus 88 v~~a~~~~~ 96 (99)
T 2div_A 88 LNYATYSGP 96 (99)
T ss_dssp EEETTCCSS
T ss_pred EeecCCCCC
Confidence 999987643
No 111
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.8e-18 Score=133.05 Aligned_cols=84 Identities=24% Similarity=0.450 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
...+++|||+|||+++|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+.++
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8754
No 112
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.6e-18 Score=132.67 Aligned_cols=84 Identities=27% Similarity=0.478 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEE-EEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEV-RIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v-~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
...++|||+|||+++|+++|+++|+.||.|..| +|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 87643
No 113
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=1.3e-17 Score=132.34 Aligned_cols=84 Identities=23% Similarity=0.441 Sum_probs=77.7
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+|+++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+||..+ +..|+|+.|.|.++.
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAF 102 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEcc
Confidence 3589999999999999999999999999999999999999999999999999999999999976 599999999999999
Q ss_pred CCCcc
Q 011105 372 PQADQ 376 (493)
Q Consensus 372 ~~~~~ 376 (493)
++..+
T Consensus 103 ~~~~~ 107 (109)
T 2rs2_A 103 PRRAQ 107 (109)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87543
No 114
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=9.1e-18 Score=135.09 Aligned_cols=85 Identities=26% Similarity=0.497 Sum_probs=80.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+.+|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+..+.
T Consensus 92 a~~~~ 96 (115)
T 2dgo_A 92 ATRKP 96 (115)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 87654
No 115
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=5.6e-18 Score=132.29 Aligned_cols=80 Identities=19% Similarity=0.305 Sum_probs=76.7
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEE--------EEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCe
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITK--------VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 363 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~ 363 (493)
..++|||+|||+.+++++|+++|++||.|.. |+|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 3589999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred EEEEEecC
Q 011105 364 VLDCSLAK 371 (493)
Q Consensus 364 ~i~v~~a~ 371 (493)
+|+|.+|+
T Consensus 92 ~l~V~~A~ 99 (99)
T 2la6_A 92 PIKVSFAT 99 (99)
T ss_dssp BCEEEECC
T ss_pred EEEEEecC
Confidence 99999984
No 116
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.74 E-value=2.6e-17 Score=129.46 Aligned_cols=78 Identities=32% Similarity=0.667 Sum_probs=72.6
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+|+++|+++|++||.|..|.|+ ++||||+|.+.++|.+||..||+..|.|++|.|.|+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 34899999999999999999999999999999997 4699999999999999999999999999999999999
Q ss_pred CCCccC
Q 011105 372 PQADQK 377 (493)
Q Consensus 372 ~~~~~~ 377 (493)
++....
T Consensus 82 ~~~~~~ 87 (103)
T 2dgu_A 82 PPDQKR 87 (103)
T ss_dssp CCCCCC
T ss_pred CCcccc
Confidence 876544
No 117
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=4.4e-18 Score=139.23 Aligned_cols=85 Identities=22% Similarity=0.309 Sum_probs=80.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 291 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
...++|||+|||+.+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 33589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCc
Q 011105 371 KPQAD 375 (493)
Q Consensus 371 ~~~~~ 375 (493)
.++..
T Consensus 124 ~~~~p 128 (129)
T 2kxn_B 124 ITKRP 128 (129)
T ss_dssp SSSSC
T ss_pred cCCCC
Confidence 88753
No 118
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.74 E-value=1e-17 Score=127.51 Aligned_cols=81 Identities=22% Similarity=0.533 Sum_probs=75.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEe
Q 011105 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (493)
Q Consensus 115 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~ 194 (493)
.....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++ +++..|.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999997 68888999999997
Q ss_pred cc
Q 011105 195 AA 196 (493)
Q Consensus 195 ~~ 196 (493)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 119
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.7e-18 Score=132.92 Aligned_cols=79 Identities=22% Similarity=0.269 Sum_probs=75.2
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+.+|+++|+++|++||.|.+|+|++++. +.++|||||+|.+.++|.+||. +++..|.|+.|.|.++..
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 48999999999999999999999999999999999988 8889999999999999999999 899999999999999876
Q ss_pred C
Q 011105 373 Q 373 (493)
Q Consensus 373 ~ 373 (493)
.
T Consensus 89 ~ 89 (103)
T 1s79_A 89 Y 89 (103)
T ss_dssp H
T ss_pred H
Confidence 3
No 120
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=7.6e-18 Score=137.80 Aligned_cols=85 Identities=27% Similarity=0.433 Sum_probs=80.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEe
Q 011105 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (493)
Q Consensus 115 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~ 194 (493)
.+...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.|++..|.|+.|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 195 AAQAK 199 (493)
Q Consensus 195 ~~~~~ 199 (493)
++.++
T Consensus 122 ~a~~~ 126 (129)
T 2kxn_B 122 FSITK 126 (129)
T ss_dssp CCSSS
T ss_pred EecCC
Confidence 98754
No 121
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=9.9e-18 Score=134.01 Aligned_cols=86 Identities=23% Similarity=0.458 Sum_probs=80.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhC------CCcccC
Q 011105 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN------SCELKG 188 (493)
Q Consensus 115 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~------~~~i~g 188 (493)
.....++|||+|||+++|+++|+++|..||.|..|+|+.++.++.++|||||+|.+.++|.+||+.|| +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ceEEEecccccc
Q 011105 189 KKIKCSAAQAKH 200 (493)
Q Consensus 189 ~~i~V~~~~~~~ 200 (493)
+.|.|.++.++.
T Consensus 91 ~~l~v~~a~~~~ 102 (111)
T 1x4h_A 91 RQLKVDLAVTRD 102 (111)
T ss_dssp CEEEEECCCCCC
T ss_pred EEEEEEECCCCc
Confidence 999999987653
No 122
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.8e-18 Score=132.03 Aligned_cols=84 Identities=18% Similarity=0.413 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCC---CCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEE
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKD---SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC 193 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~---~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V 193 (493)
...++|||+|||+++|+++|+++|+.||.|..|.|+.++. |+.++|||||+|.+.++|.+||+.||+..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999999876 6689999999999999999999999999999999999
Q ss_pred ecccccc
Q 011105 194 SAAQAKH 200 (493)
Q Consensus 194 ~~~~~~~ 200 (493)
.++.+..
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9987643
No 123
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.9e-17 Score=130.33 Aligned_cols=78 Identities=14% Similarity=0.252 Sum_probs=73.3
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecC-----eEEE
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG-----QVLD 366 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g-----~~i~ 366 (493)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||+..|.| ++|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 3489999999999999999999999999999999886 799999999999999999999999999 9999
Q ss_pred EEecCCCCcc
Q 011105 367 CSLAKPQADQ 376 (493)
Q Consensus 367 v~~a~~~~~~ 376 (493)
|.++.++...
T Consensus 87 V~~a~~~~~~ 96 (108)
T 1x4c_A 87 VKVDGPRSPS 96 (108)
T ss_dssp EEESSCCSCC
T ss_pred EEeCCCCCCC
Confidence 9999987543
No 124
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.1e-18 Score=133.94 Aligned_cols=85 Identities=27% Similarity=0.511 Sum_probs=80.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.+..
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 125
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.1e-18 Score=131.91 Aligned_cols=81 Identities=23% Similarity=0.372 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|++||.|.+|+|+.++. +.++|||||+|.+.++|.+||. +++..|.|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988 9999999999999999999999 999999999999987
Q ss_pred ccc
Q 011105 196 AQA 198 (493)
Q Consensus 196 ~~~ 198 (493)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 754
No 126
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=6.4e-18 Score=142.85 Aligned_cols=82 Identities=20% Similarity=0.237 Sum_probs=78.4
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCC--cEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHG--KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
.++|||+|||+++|+++|+++|+.|| .|..|+|+.++.++.++|||||+|.+.++|.+||..||+..|.|++|.|.++
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 37999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 011105 371 KPQA 374 (493)
Q Consensus 371 ~~~~ 374 (493)
.++.
T Consensus 135 ~~~~ 138 (156)
T 3n9u_C 135 TRQN 138 (156)
T ss_dssp CHHH
T ss_pred CCCc
Confidence 8753
No 127
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1e-17 Score=135.42 Aligned_cols=81 Identities=23% Similarity=0.388 Sum_probs=76.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 291 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
...++|||+|||+.+++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.|+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 34589999999999999999999999999999999999988999999999999999999999999999999999999997
Q ss_pred C
Q 011105 371 K 371 (493)
Q Consensus 371 ~ 371 (493)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 4
No 128
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=9.9e-18 Score=129.89 Aligned_cols=80 Identities=25% Similarity=0.383 Sum_probs=75.6
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+++++|+++|++||.|..|+|+.++. +.++|||||+|.+.++|.+|+..||+..|.|++|+|.+++
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 348999999999999999999999999999999999886 7779999999999999999999999999999999999986
Q ss_pred C
Q 011105 372 P 372 (493)
Q Consensus 372 ~ 372 (493)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 129
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.9e-17 Score=129.28 Aligned_cols=83 Identities=29% Similarity=0.500 Sum_probs=77.8
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+++++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+||. +++.|.|++|.|.++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPN 91 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecC
Confidence 35899999999999999999999999999999999999989999999999999999999999 5789999999999999
Q ss_pred CCCcc
Q 011105 372 PQADQ 376 (493)
Q Consensus 372 ~~~~~ 376 (493)
++...
T Consensus 92 ~~~~~ 96 (103)
T 2cqg_A 92 SKQSQ 96 (103)
T ss_dssp TTCCC
T ss_pred CCCcC
Confidence 87554
No 130
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=132.34 Aligned_cols=86 Identities=28% Similarity=0.500 Sum_probs=80.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeC-CCCCCcceEEEEEeccHHHHHHHHHHh-CCCcccCceEEE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG-KDSGEAKGYAFVTFRTKELASQAIEEL-NSCELKGKKIKC 193 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~-~~~g~~~g~afV~F~~~e~A~~Al~~l-~~~~i~g~~i~V 193 (493)
....++|||+|||+++|+++|+++|+.||.|..|+|+.+ +.++.++|||||+|.+.++|.+||..| |+..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 456789999999999999999999999999999999999 788999999999999999999999999 999999999999
Q ss_pred eccccccc
Q 011105 194 SAAQAKHR 201 (493)
Q Consensus 194 ~~~~~~~~ 201 (493)
.++.++..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987544
No 131
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=133.00 Aligned_cols=83 Identities=24% Similarity=0.396 Sum_probs=76.9
Q ss_pred cceEEEccCCCCCCHHHHH---HHHhcCCcEEEEEeCCCCCCC---CcccEEEEEeCCHHHHHHHHHhcCCceecCeEEE
Q 011105 293 VKALYVKNLPKDITQDRLK---ELFAHHGKITKVVIPPAKPGQ---ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 366 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~~---~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~ 366 (493)
.++|||+|||+.+++++|+ ++|++||.|..|.|+++..++ .++|||||+|.+.++|.+||..||+..|.|++|+
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 94 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK 94 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEE
Confidence 4899999999999999999 999999999999999988643 4569999999999999999999999999999999
Q ss_pred EEecCCCCc
Q 011105 367 CSLAKPQAD 375 (493)
Q Consensus 367 v~~a~~~~~ 375 (493)
|.||.++..
T Consensus 95 V~~a~~k~~ 103 (111)
T 2cpi_A 95 ASLGTTKYC 103 (111)
T ss_dssp EESCCCCSC
T ss_pred EEecccccc
Confidence 999998753
No 132
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=8.2e-18 Score=130.36 Aligned_cols=78 Identities=14% Similarity=0.180 Sum_probs=71.1
Q ss_pred ccceEEEccCCC-CCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCC--ceecCeEEEEE
Q 011105 292 QVKALYVKNLPK-DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK--YEIDGQVLDCS 368 (493)
Q Consensus 292 ~~~~l~v~nl~~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~--~~~~g~~i~v~ 368 (493)
..++|||+|||+ .+|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|+..||+ ..|.||+|+|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 348999999999 9999999999999999999999876 58999999999999999999885 45999999999
Q ss_pred ecCCCCc
Q 011105 369 LAKPQAD 375 (493)
Q Consensus 369 ~a~~~~~ 375 (493)
||.....
T Consensus 88 ~a~~~~~ 94 (102)
T 1x4d_A 88 LSQKYKR 94 (102)
T ss_dssp EECCCTT
T ss_pred ECCCCCC
Confidence 9987644
No 133
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=131.45 Aligned_cols=84 Identities=18% Similarity=0.321 Sum_probs=78.5
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCc-EEEEEeC-CCCCCCCcccEEEEEeCCHHHHHHHHHhcC--CceecCeEEEEE
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGK-ITKVVIP-PAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDCS 368 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~-v~~v~i~-~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~ 368 (493)
.++|||+|||+.+|+++|+++|+.||. |..|.|+ .++.++.++|||||+|.+.++|.+|+..|| +..|.|++|+|.
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~ 87 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVD 87 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEE
Confidence 389999999999999999999999998 9999999 788888889999999999999999999996 589999999999
Q ss_pred ecCCCCcc
Q 011105 369 LAKPQADQ 376 (493)
Q Consensus 369 ~a~~~~~~ 376 (493)
|+.++...
T Consensus 88 ~a~~~~~~ 95 (109)
T 2dis_A 88 WAEPEIDV 95 (109)
T ss_dssp ESCSSCST
T ss_pred EcCCCCCc
Confidence 99987654
No 134
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=9.4e-18 Score=129.19 Aligned_cols=82 Identities=22% Similarity=0.359 Sum_probs=76.4
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+.+++++|+++|++||.|..|.|+++ ++.++|||||+|.+.++|.+|+..||+..|.|++|+|.++.+
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 8 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 489999999999999999999999999999999874 667799999999999999999999999999999999999988
Q ss_pred CCcc
Q 011105 373 QADQ 376 (493)
Q Consensus 373 ~~~~ 376 (493)
+...
T Consensus 86 ~~~~ 89 (92)
T 2dgv_A 86 ASGP 89 (92)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7543
No 135
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.73 E-value=6.4e-18 Score=139.12 Aligned_cols=85 Identities=19% Similarity=0.287 Sum_probs=79.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcCCcEEE--EEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCc----eecCeE
Q 011105 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITK--VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY----EIDGQV 364 (493)
Q Consensus 291 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~--v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~----~~~g~~ 364 (493)
...++|||+|||+.+|+++|+++|++||.|.. |+|++++.++.++|||||+|.+. +|.+|+..||+. .|.||+
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 34589999999999999999999999999977 99999999999999999999999 999999999999 999999
Q ss_pred EEEEecCCCCcc
Q 011105 365 LDCSLAKPQADQ 376 (493)
Q Consensus 365 i~v~~a~~~~~~ 376 (493)
|.|.++.+....
T Consensus 100 l~V~~a~~~~~~ 111 (131)
T 2m2b_A 100 INVEFAKGSKRD 111 (131)
T ss_dssp CCCEECCCSCCC
T ss_pred EEEEECCCCCCC
Confidence 999999886443
No 136
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=9.8e-18 Score=123.24 Aligned_cols=74 Identities=23% Similarity=0.352 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
.+..|||+||++.+|+++|+++|.+||+|.+++++. ++|||||+|.+.++|.+|++.||+..+.|++|+|..+.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999965 68999999999999999999999999999999998874
No 137
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.73 E-value=4.2e-17 Score=132.99 Aligned_cols=87 Identities=28% Similarity=0.410 Sum_probs=80.4
Q ss_pred cccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q 011105 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (493)
Q Consensus 289 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 368 (493)
.....++|||+|||+.+++++|+++|+.||.|..|+|+.+. ++.++|||||+|.+.++|.+|+..||+..|.|++|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34456899999999999999999999999999999999998 78889999999999999999999999999999999999
Q ss_pred ecCCCCcc
Q 011105 369 LAKPQADQ 376 (493)
Q Consensus 369 ~a~~~~~~ 376 (493)
+|.+....
T Consensus 110 ~a~~~~~~ 117 (124)
T 2kt5_A 110 LVASQIDL 117 (124)
T ss_dssp EECCTTCC
T ss_pred EeCCCCCC
Confidence 99886543
No 138
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=130.64 Aligned_cols=83 Identities=27% Similarity=0.452 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|++||.|..|+|+.+ ++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 446789999999999999999999999999999999998 699999999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2d9p_A 90 AQRKE 94 (103)
T ss_dssp CSSCC
T ss_pred ecccc
Confidence 87654
No 139
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=2.3e-17 Score=130.41 Aligned_cols=83 Identities=22% Similarity=0.445 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccC---ceEEE
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG---KKIKC 193 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g---~~i~V 193 (493)
...++|||+|||+++|+++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+||+.||+..|.+ +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457899999999999999999999999999999999997 69999999999999999999999999999998 99999
Q ss_pred ecccccc
Q 011105 194 SAAQAKH 200 (493)
Q Consensus 194 ~~~~~~~ 200 (493)
.++....
T Consensus 92 ~~a~~~~ 98 (105)
T 2dnh_A 92 KFADTDK 98 (105)
T ss_dssp EESCSSC
T ss_pred EECccCc
Confidence 9987643
No 140
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.2e-18 Score=129.93 Aligned_cols=80 Identities=23% Similarity=0.345 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCC--CcccCceEE
Q 011105 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS--CELKGKKIK 192 (493)
Q Consensus 115 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~--~~i~g~~i~ 192 (493)
.+...++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.|++ ..|.|++|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4567899999999999999999999999999999999875 68999999999999999998864 689999999
Q ss_pred Eecccccc
Q 011105 193 CSAAQAKH 200 (493)
Q Consensus 193 V~~~~~~~ 200 (493)
|.++..+.
T Consensus 86 V~~A~~~~ 93 (105)
T 1sjq_A 86 IQFSNHKE 93 (105)
T ss_dssp BCCCSSSS
T ss_pred EEEcCCCC
Confidence 99987653
No 141
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=141.50 Aligned_cols=82 Identities=27% Similarity=0.475 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIG--EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
..++|||+|||+++|+++|+++|+.|| .|.+|+|+.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8754
No 142
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.9e-18 Score=132.46 Aligned_cols=82 Identities=17% Similarity=0.184 Sum_probs=77.4
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 34899999999999999999999999999988888888888889999999999999999999999999999999999987
Q ss_pred CC
Q 011105 372 PQ 373 (493)
Q Consensus 372 ~~ 373 (493)
.+
T Consensus 94 ~~ 95 (98)
T 2cqp_A 94 GP 95 (98)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 143
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=130.81 Aligned_cols=84 Identities=20% Similarity=0.396 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCee-EEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCce----
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVT-EVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKK---- 190 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~-~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~---- 190 (493)
....++|||+|||+++|+++|+++|++||.|. .|+|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44678999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEeccccc
Q 011105 191 IKCSAAQAK 199 (493)
Q Consensus 191 i~V~~~~~~ 199 (493)
|+|.++.+.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999888654
No 144
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.73 E-value=1.8e-17 Score=126.06 Aligned_cols=78 Identities=24% Similarity=0.454 Sum_probs=73.9
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
..++|||+|||+.+++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+. +++..|+|++|.|.+|
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 34899999999999999999999999999999999999999999999999999999999997 5888999999999986
No 145
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=1.1e-17 Score=132.58 Aligned_cols=85 Identities=24% Similarity=0.469 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcc---cCceEE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL---KGKKIK 192 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i---~g~~i~ 192 (493)
+...++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.||+..+ .++.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999987 899999
Q ss_pred Eecccccc
Q 011105 193 CSAAQAKH 200 (493)
Q Consensus 193 V~~~~~~~ 200 (493)
|.++....
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99987654
No 146
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=127.75 Aligned_cols=79 Identities=15% Similarity=0.275 Sum_probs=72.4
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhc--CCceecCeEEEEEec
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT--EKYEIDGQVLDCSLA 370 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l--~~~~~~g~~i~v~~a 370 (493)
.++|||+|||+.+|+++|+++|++||.|..|.|+++ ||||||+|.+.++|.+|+..| ++..|.|++|.|.|+
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 489999999999999999999999999999999875 699999999999999999976 578899999999999
Q ss_pred CCCCccC
Q 011105 371 KPQADQK 377 (493)
Q Consensus 371 ~~~~~~~ 377 (493)
.++....
T Consensus 89 ~~~~~~~ 95 (101)
T 2cq1_A 89 NHKELKT 95 (101)
T ss_dssp SCSSCCC
T ss_pred CcccCcC
Confidence 9876543
No 147
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=1.5e-17 Score=127.11 Aligned_cols=80 Identities=26% Similarity=0.529 Sum_probs=76.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecccc
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~ 198 (493)
.++|||+|||+++|+++|+++|+.||.|..|+++.++.++.++|||||+|.+.++|.+|+ .||+..|.|+.|+|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 479999999999999999999999999999999999989999999999999999999999 8999999999999998875
Q ss_pred c
Q 011105 199 K 199 (493)
Q Consensus 199 ~ 199 (493)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 148
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=128.67 Aligned_cols=81 Identities=28% Similarity=0.468 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++++++|+++|++||.|..|+|+.++. +.++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34568999999999999999999999999999999999986 99999999999999999999999999999999999988
Q ss_pred cc
Q 011105 196 AQ 197 (493)
Q Consensus 196 ~~ 197 (493)
+.
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 149
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=1.7e-17 Score=131.58 Aligned_cols=80 Identities=25% Similarity=0.398 Sum_probs=76.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 291 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
...++|||+|||+.+|+++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+||..||+..|.|++|+|.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 345899999999999999999999999999999999998 7888999999999999999999999999999999999998
Q ss_pred C
Q 011105 371 K 371 (493)
Q Consensus 371 ~ 371 (493)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 6
No 150
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=125.79 Aligned_cols=78 Identities=27% Similarity=0.599 Sum_probs=72.7
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+|+++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..||+..|.|++|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 34899999999999999999999999999999997 5899999999999999999999999999999999999
Q ss_pred CCCccC
Q 011105 372 PQADQK 377 (493)
Q Consensus 372 ~~~~~~ 377 (493)
++....
T Consensus 79 ~~~~~~ 84 (90)
T 2dnq_A 79 NKSKAS 84 (90)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 151
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=5.7e-18 Score=124.91 Aligned_cols=75 Identities=23% Similarity=0.440 Sum_probs=72.2
Q ss_pred eEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 295 ~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
+|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+. ||+..|.|++|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999889999999999999999999998 8999999999999986
No 152
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.2e-18 Score=136.56 Aligned_cols=83 Identities=12% Similarity=0.118 Sum_probs=77.5
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcE-EEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKI-TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v-~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
..++|||+|||+.+|+++|+++|+.||.| ..|+|+.++ ++.++|||||+|.+.++|.+||.. |+..|.|++|.|.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 34899999999999999999999999999 899999998 788899999999999999999997 999999999999999
Q ss_pred CCCCcc
Q 011105 371 KPQADQ 376 (493)
Q Consensus 371 ~~~~~~ 376 (493)
.++..+
T Consensus 92 ~~~~~~ 97 (114)
T 2cpy_A 92 TLEDMR 97 (114)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 887643
No 153
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=132.92 Aligned_cols=84 Identities=26% Similarity=0.549 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.+..
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87543
No 154
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.6e-18 Score=128.78 Aligned_cols=82 Identities=24% Similarity=0.520 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+...++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred cc
Q 011105 196 AQ 197 (493)
Q Consensus 196 ~~ 197 (493)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 155
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=130.66 Aligned_cols=84 Identities=23% Similarity=0.356 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhc-cCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCc-ccCceEEE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKS-IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE-LKGKKIKC 193 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~-i~g~~i~V 193 (493)
+...++|||+|||+++|+++|+++|+. ||.|..|+|+.++ ++.++|||||+|.+.++|.+||+.|++.. |.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456789999999999999999999999 9999999999998 89999999999999999999999999999 99999999
Q ss_pred ecccccc
Q 011105 194 SAAQAKH 200 (493)
Q Consensus 194 ~~~~~~~ 200 (493)
.++.++.
T Consensus 85 ~~a~~~~ 91 (104)
T 2dhg_A 85 SVAIPKA 91 (104)
T ss_dssp CBCCCCC
T ss_pred EEccCCC
Confidence 9987543
No 156
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=1.6e-17 Score=132.51 Aligned_cols=84 Identities=26% Similarity=0.442 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+.++
T Consensus 103 a~~~ 106 (110)
T 1oo0_B 103 CFVK 106 (110)
T ss_dssp SEES
T ss_pred cccC
Confidence 8754
No 157
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=1.8e-17 Score=130.78 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=70.9
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCC-cEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHG-KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
.++|||+|||+.+++++|+++|++|| .|..+.|+.. .++|||||+|.+.++|.+||..||+..|.|++|+|.++.
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 38999999999999999999999999 8999999753 258999999999999999999999999999999999997
Q ss_pred CC
Q 011105 372 PQ 373 (493)
Q Consensus 372 ~~ 373 (493)
.+
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 65
No 158
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.2e-17 Score=128.08 Aligned_cols=79 Identities=20% Similarity=0.258 Sum_probs=71.6
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCC--ceecCeEEEEEec
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK--YEIDGQVLDCSLA 370 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~--~~~~g~~i~v~~a 370 (493)
.++|||+|||+.+++++|+++|++||.|..|.|+++ ||||||+|.+.++|.+|+..|++ ..|.|++|+|.|+
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 489999999999999999999999999999999874 68999999999999999998865 4599999999999
Q ss_pred CCCCccC
Q 011105 371 KPQADQK 377 (493)
Q Consensus 371 ~~~~~~~ 377 (493)
.++....
T Consensus 89 ~~~~~~~ 95 (104)
T 1wex_A 89 TSKRITR 95 (104)
T ss_dssp SSSSCCC
T ss_pred cCccccC
Confidence 9876543
No 159
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-17 Score=129.45 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=76.2
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEE-EEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITK-VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~-v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
..++|||+|||+.+|+++|+++|+.||.|.. |+|+.+ .+++++|||||+|.+.++|.+||.. |+..|.||.|.|.++
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 3489999999999999999999999999997 889888 6788899999999999999999997 999999999999999
Q ss_pred CCCCcc
Q 011105 371 KPQADQ 376 (493)
Q Consensus 371 ~~~~~~ 376 (493)
.++...
T Consensus 92 ~~~~~~ 97 (104)
T 1wg5_A 92 SRAEVR 97 (104)
T ss_dssp CTTTSC
T ss_pred CHHHHH
Confidence 876543
No 160
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.2e-17 Score=127.82 Aligned_cols=80 Identities=29% Similarity=0.490 Sum_probs=72.8
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+|+++|+++|++||.| +++.+ .++.++|||||+|.+.++|.+||..||+..|.|++|+|.|+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 35899999999999999999999999987 56666 567779999999999999999999999999999999999998
Q ss_pred CCCc
Q 011105 372 PQAD 375 (493)
Q Consensus 372 ~~~~ 375 (493)
++..
T Consensus 90 ~~~~ 93 (101)
T 2fc9_A 90 PRGS 93 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8744
No 161
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.72 E-value=1.1e-17 Score=135.17 Aligned_cols=82 Identities=23% Similarity=0.469 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.||+..|.|++|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 011105 196 AQ 197 (493)
Q Consensus 196 ~~ 197 (493)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 162
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.7e-18 Score=132.93 Aligned_cols=84 Identities=21% Similarity=0.513 Sum_probs=80.1
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+.+++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.++.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 48999999999999999999999999999999999988899999999999999999999999999999999999999998
Q ss_pred CCcc
Q 011105 373 QADQ 376 (493)
Q Consensus 373 ~~~~ 376 (493)
+...
T Consensus 88 ~~~~ 91 (104)
T 1p1t_A 88 EKNK 91 (104)
T ss_dssp TTHH
T ss_pred ccch
Confidence 7654
No 163
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=2.9e-17 Score=130.30 Aligned_cols=82 Identities=21% Similarity=0.349 Sum_probs=77.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEe
Q 011105 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (493)
Q Consensus 115 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~ 194 (493)
.....++|||+|||+.+|+++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999998 79999999999999999999999999999999999998
Q ss_pred ccc
Q 011105 195 AAQ 197 (493)
Q Consensus 195 ~~~ 197 (493)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 874
No 164
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=127.29 Aligned_cols=83 Identities=19% Similarity=0.428 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCC-cceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGE-AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~-~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
...++|||+|||+++|+++|+++|++||.|..|.|+.+..++. ++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3568999999999999999999999999999999999887666 899999999999999999999999999999999998
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8653
No 165
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=126.51 Aligned_cols=79 Identities=19% Similarity=0.319 Sum_probs=75.0
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+.+|+++|+++|+.| .|..|+|+++ .++.++|||||+|.+.++|.+||. ||+..|.|++|.|.++.+
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred ccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 4899999999999999999999999 9999999999 677889999999999999999999 999999999999999988
Q ss_pred CC
Q 011105 373 QA 374 (493)
Q Consensus 373 ~~ 374 (493)
+.
T Consensus 87 ~~ 88 (91)
T 2dgw_A 87 GP 88 (91)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 166
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.72 E-value=2.4e-17 Score=134.56 Aligned_cols=83 Identities=22% Similarity=0.358 Sum_probs=78.2
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|| .||+..|.|+.|+|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999999999999888999999999999999999999 799999999999999998
Q ss_pred CCCc
Q 011105 372 PQAD 375 (493)
Q Consensus 372 ~~~~ 375 (493)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7543
No 167
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=7.2e-18 Score=131.80 Aligned_cols=81 Identities=21% Similarity=0.415 Sum_probs=75.7
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCC-CCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK-PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~-~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
..++|||+|||+.+++++|+++|+.|| |..|+|++++ .++.++|||||+|.+.++|.+|| .||+..|.|+.|+|.++
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVA 95 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEec
Confidence 348999999999999999999999999 9999999998 68888999999999999999999 89999999999999999
Q ss_pred CCCC
Q 011105 371 KPQA 374 (493)
Q Consensus 371 ~~~~ 374 (493)
.++.
T Consensus 96 ~~~~ 99 (100)
T 2j76_E 96 DQAQ 99 (100)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 8764
No 168
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=2e-17 Score=130.20 Aligned_cols=83 Identities=19% Similarity=0.480 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|+.|| |..|+|+.++.+++++|||||+|.+.++|.+|| .||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34578999999999999999999999997 999999999999999999999999999999999 7999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 87643
No 169
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=7.1e-18 Score=130.74 Aligned_cols=81 Identities=22% Similarity=0.361 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
+..++|||+|||+++|+++|+++|++||.|..+.++.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred c
Q 011105 197 Q 197 (493)
Q Consensus 197 ~ 197 (493)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 170
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=133.05 Aligned_cols=85 Identities=31% Similarity=0.484 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCee--------EEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCccc
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVT--------EVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~--------~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~ 187 (493)
....++|||+|||+++|+++|+++|+.||.|. .|+|+.++.+++++|||||+|.+.++|.+||+.||+..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 44678999999999999999999999999999 6999999999999999999999999999999999999999
Q ss_pred CceEEEecccccc
Q 011105 188 GKKIKCSAAQAKH 200 (493)
Q Consensus 188 g~~i~V~~~~~~~ 200 (493)
|+.|+|.++..+.
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999987654
No 171
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.71 E-value=3.3e-17 Score=139.41 Aligned_cols=84 Identities=15% Similarity=0.319 Sum_probs=80.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+.+.
T Consensus 116 a~~~ 119 (156)
T 1h2v_Z 116 DAGF 119 (156)
T ss_dssp ESCC
T ss_pred CCCC
Confidence 9754
No 172
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.71 E-value=1.1e-17 Score=123.37 Aligned_cols=75 Identities=24% Similarity=0.656 Sum_probs=72.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 121 ~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
+|||+|||+++|+++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+|++ +++..|.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999998 9999999999999864
No 173
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=131.50 Aligned_cols=84 Identities=21% Similarity=0.509 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+||.. ++..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999997 99999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 87654
No 174
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.9e-18 Score=131.35 Aligned_cols=80 Identities=16% Similarity=0.244 Sum_probs=73.6
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+|+++|+++|+.||.| .|+|+.++ +++++|||||+|.+.++|.+||. +|+..|.+|.|.|.++.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 34899999999999999999999999955 99999998 78889999999999999999995 79999999999999987
Q ss_pred CCC
Q 011105 372 PQA 374 (493)
Q Consensus 372 ~~~ 374 (493)
+..
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 664
No 175
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=125.42 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCc--ccCceEEE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE--LKGKKIKC 193 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~--i~g~~i~V 193 (493)
.+++++|||+|||+++|+++|+++|++||.|.+|++++ .+|||||+|.+.++|.+|++.|++.. |.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 45788999999999999999999999999999999985 46899999999999999999999876 78999999
Q ss_pred eccccc
Q 011105 194 SAAQAK 199 (493)
Q Consensus 194 ~~~~~~ 199 (493)
.+++.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 998764
No 176
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-17 Score=131.21 Aligned_cols=79 Identities=15% Similarity=0.275 Sum_probs=72.7
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcC--CceecCeEEEEEec
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSLA 370 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~a 370 (493)
.++|||+|||+.+|+++|+++|++||.|..|+|+++ ||||||+|.+.++|.+|+..|+ +..|.|++|+|.|+
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 489999999999999999999999999999999875 6999999999999999999887 46899999999999
Q ss_pred CCCCccC
Q 011105 371 KPQADQK 377 (493)
Q Consensus 371 ~~~~~~~ 377 (493)
+++....
T Consensus 105 ~~k~~~~ 111 (119)
T 2ad9_A 105 NHKELKT 111 (119)
T ss_dssp SSSSCCC
T ss_pred cCCCCCc
Confidence 9876554
No 177
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=3.5e-17 Score=125.94 Aligned_cols=83 Identities=22% Similarity=0.377 Sum_probs=77.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|++||.|..|+|+.+ ++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356789999999999999999999999999999999984 689999999999999999999999999999999999998
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.+..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 87643
No 178
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.71 E-value=6.1e-18 Score=131.10 Aligned_cols=80 Identities=18% Similarity=0.183 Sum_probs=75.7
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+.+|+++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.++.+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 38999999999999999999999999999999998888888899999999999999999999999999999999999864
No 179
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=131.31 Aligned_cols=82 Identities=27% Similarity=0.413 Sum_probs=76.1
Q ss_pred ccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q 011105 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (493)
Q Consensus 290 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 369 (493)
....++|||+|||..+|+++|+++|++||.|..|+|+.++. .++|||||+|.+.++|.+|+..||+..|.|++|+|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 33458999999999999999999999999999999998864 3689999999999999999999999999999999999
Q ss_pred cCCC
Q 011105 370 AKPQ 373 (493)
Q Consensus 370 a~~~ 373 (493)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9876
No 180
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=130.14 Aligned_cols=84 Identities=24% Similarity=0.429 Sum_probs=77.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccccc
Q 011105 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~~ 199 (493)
++|||+|||+++|+++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|++.|++..|.|+.|.|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999886 6899999999999999999999999999999999998642
Q ss_pred ----------------ccccccCCC
Q 011105 200 ----------------HRLFIGNVP 208 (493)
Q Consensus 200 ----------------~~l~v~~l~ 208 (493)
..|||++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 368888876
No 181
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=130.60 Aligned_cols=82 Identities=27% Similarity=0.616 Sum_probs=78.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecccc
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~ 198 (493)
.++|||+|||+++|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.++.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 57999999999999999999999999999999999998899999999999999999999999999999999999999876
Q ss_pred cc
Q 011105 199 KH 200 (493)
Q Consensus 199 ~~ 200 (493)
..
T Consensus 88 ~~ 89 (104)
T 1p1t_A 88 EK 89 (104)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 182
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.5e-17 Score=132.69 Aligned_cols=83 Identities=24% Similarity=0.566 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.+++ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+...
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 8653
No 183
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1e-16 Score=123.25 Aligned_cols=77 Identities=22% Similarity=0.397 Sum_probs=71.8
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+|+++|+++|++||.|..|.|++ +||||+|.+.++|.+|+..||+..|.|++|+|.++.
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 348999999999999999999999999999999973 499999999999999999999999999999999998
Q ss_pred CCCcc
Q 011105 372 PQADQ 376 (493)
Q Consensus 372 ~~~~~ 376 (493)
++...
T Consensus 81 ~~~~~ 85 (92)
T 2dgt_A 81 SRLRT 85 (92)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87553
No 184
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-17 Score=124.17 Aligned_cols=76 Identities=25% Similarity=0.522 Sum_probs=73.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
++|||+|||+++|+++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+|++.++ ..|.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999999999999999999999999999999888 9999999999875
No 185
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.71 E-value=3e-17 Score=134.39 Aligned_cols=84 Identities=24% Similarity=0.450 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+.+.
T Consensus 99 a~~~ 102 (126)
T 3ex7_B 99 CFVR 102 (126)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8754
No 186
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=130.44 Aligned_cols=82 Identities=21% Similarity=0.485 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCC-CCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDS-GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~-g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
...++|||+|||+++|+++|+++|+.|| |..|+|+.++.+ ++++|||||+|.+.++|.+|| .||+..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 999999999988 999999999999999999999 8999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.++.
T Consensus 91 a~~~~ 95 (104)
T 1wi8_A 91 ADQAQ 95 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87653
No 187
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.5e-17 Score=128.98 Aligned_cols=80 Identities=14% Similarity=0.220 Sum_probs=74.4
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
..+|||+|||+.+|+++|+++|+.| .|..|+|+.++. ++++|||||+|.+.++|.+|| .||+..|.||.|.|..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4799999999999999999999999 899999999987 777999999999999999999 5899999999999999987
Q ss_pred CCc
Q 011105 373 QAD 375 (493)
Q Consensus 373 ~~~ 375 (493)
+..
T Consensus 93 ~~~ 95 (109)
T 2dnn_A 93 RQW 95 (109)
T ss_dssp HHH
T ss_pred cch
Confidence 644
No 188
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=128.50 Aligned_cols=83 Identities=31% Similarity=0.461 Sum_probs=75.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 291 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
...++|||+|||+.+|+++|+++|+.|+ .|.++.++.++.++|||||+|.+.++|.+||..||+..|.|++|+|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3458999999999999999999999874 6777778878888999999999999999999999999999999999999
Q ss_pred CCCCcc
Q 011105 371 KPQADQ 376 (493)
Q Consensus 371 ~~~~~~ 376 (493)
+++...
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 987553
No 189
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=4.9e-18 Score=130.16 Aligned_cols=82 Identities=26% Similarity=0.474 Sum_probs=74.4
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
++|||+|||+.+++++|+++|++||.|..|.|++++.++.++|||||+|.+.+ |.+|+..||+..|.|++|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999999999999887
Q ss_pred Ccc
Q 011105 374 ADQ 376 (493)
Q Consensus 374 ~~~ 376 (493)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 190
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=129.39 Aligned_cols=80 Identities=24% Similarity=0.378 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+...++|||+|||+++|+++|+++|+.||.| .|+|+.++ +++++|||||+|.+.++|.+||+ +|+..|.++.|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4567899999999999999999999999954 99999998 79999999999999999999996 899999999999987
Q ss_pred ccc
Q 011105 196 AQA 198 (493)
Q Consensus 196 ~~~ 198 (493)
+..
T Consensus 89 ~~~ 91 (102)
T 1wez_A 89 NST 91 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 764
No 191
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.5e-17 Score=127.25 Aligned_cols=83 Identities=29% Similarity=0.488 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|+.||.|..|+|+.+.. .++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999864 3899999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cq3_A 90 ATARV 94 (103)
T ss_dssp CCSSC
T ss_pred cccCC
Confidence 87653
No 192
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=9.2e-18 Score=124.53 Aligned_cols=76 Identities=22% Similarity=0.457 Sum_probs=73.3
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
++|||+|||+.+++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|+..++ ..|+|++|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999989999999999999999999999999 9999999999987
No 193
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.7e-17 Score=128.52 Aligned_cols=80 Identities=24% Similarity=0.493 Sum_probs=74.7
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+++++|+++|+.||.|..|+|+.+ +|||||+|.+.++|.+|+..||+..|.|++|+|.|++
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 3489999999999999999999999999999999987 6899999999999999999999999999999999999
Q ss_pred CCCccC
Q 011105 372 PQADQK 377 (493)
Q Consensus 372 ~~~~~~ 377 (493)
++....
T Consensus 98 ~~~~~~ 103 (109)
T 1x4g_A 98 ESPDMT 103 (109)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 876543
No 194
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=4.2e-17 Score=128.61 Aligned_cols=80 Identities=25% Similarity=0.437 Sum_probs=74.1
Q ss_pred cceEEEccCCCCC------CHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCe-EE
Q 011105 293 VKALYVKNLPKDI------TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ-VL 365 (493)
Q Consensus 293 ~~~l~v~nl~~~~------t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~-~i 365 (493)
.++|||+|||+.+ |+++|+++|++||.|..|.|+ +.++.++|||||+|.+.++|.+||..|||..|.|+ +|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 4899999999999 789999999999999999998 46678899999999999999999999999999998 99
Q ss_pred EEEecCCCC
Q 011105 366 DCSLAKPQA 374 (493)
Q Consensus 366 ~v~~a~~~~ 374 (493)
+|.++....
T Consensus 93 ~V~~a~~~~ 101 (105)
T 2nlw_A 93 RVNLFTDFD 101 (105)
T ss_dssp EEECSCCCC
T ss_pred EEEEcchHh
Confidence 999997653
No 195
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-17 Score=130.42 Aligned_cols=83 Identities=20% Similarity=0.330 Sum_probs=77.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|..||.|..+.++.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ccc
Q 011105 196 AQA 198 (493)
Q Consensus 196 ~~~ 198 (493)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 764
No 196
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.70 E-value=3.5e-17 Score=136.45 Aligned_cols=85 Identities=27% Similarity=0.500 Sum_probs=80.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+...++|||+|||+++|+++|+++|+.||.|.+|+|+.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+....
T Consensus 119 a~~~~ 123 (139)
T 1u6f_A 119 AASGH 123 (139)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87643
No 197
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.70 E-value=2.7e-17 Score=130.52 Aligned_cols=83 Identities=24% Similarity=0.498 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+...++|||+|||+++|+++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+||+.+ +..|.|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 456789999999999999999999999999999999999999999999999999999999999965 5889999999998
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+.++
T Consensus 101 a~~~ 104 (109)
T 2rs2_A 101 AFPR 104 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8754
No 198
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.3e-18 Score=128.92 Aligned_cols=79 Identities=27% Similarity=0.333 Sum_probs=75.0
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.++.
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999887654
No 199
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.3e-17 Score=127.33 Aligned_cols=83 Identities=19% Similarity=0.379 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|++||.|..|+|+.++. .++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 44678999999999999999999999999999999999864 3789999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2cqi_A 90 ATTPS 94 (103)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 87643
No 200
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=8.5e-17 Score=125.03 Aligned_cols=77 Identities=16% Similarity=0.295 Sum_probs=72.5
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceec--CeEEEEEec
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID--GQVLDCSLA 370 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~a 370 (493)
.++|||+|||+.+|+++|+++|++||.|..|.++++ +|||||+|.+.++|.+|+..||+..|. |++|+|.|+
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 489999999999999999999999999999999865 689999999999999999999999999 999999999
Q ss_pred CCCCc
Q 011105 371 KPQAD 375 (493)
Q Consensus 371 ~~~~~ 375 (493)
.++..
T Consensus 91 ~~~~~ 95 (97)
T 1why_A 91 KSGPS 95 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98743
No 201
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4e-17 Score=128.46 Aligned_cols=83 Identities=20% Similarity=0.364 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE-EEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEe
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTE-VRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~-v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~ 194 (493)
....++|||+|||+++|+++|+++|+.||.|.. |+|+.+ .+++++|||||+|.+.++|.+||+. ++..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345789999999999999999999999999998 888888 7799999999999999999999995 9999999999998
Q ss_pred cccccc
Q 011105 195 AAQAKH 200 (493)
Q Consensus 195 ~~~~~~ 200 (493)
++....
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 886543
No 202
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.3e-17 Score=132.44 Aligned_cols=81 Identities=30% Similarity=0.441 Sum_probs=77.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecccc
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~ 198 (493)
.++|||+|||+++|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+|| .||+..|.|+.|.|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 479999999999999999999999999999999999999999999999999999999999 8999999999999999875
Q ss_pred cc
Q 011105 199 KH 200 (493)
Q Consensus 199 ~~ 200 (493)
..
T Consensus 104 ~~ 105 (114)
T 2cq4_A 104 EK 105 (114)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 203
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=129.79 Aligned_cols=82 Identities=20% Similarity=0.481 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEe
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK-DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~-~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~ 194 (493)
....++|||+|||+++|+++|+++|+.|| |.+|+|+.++ .+++++|||||+|.+.++|.+|| .|++..|.|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45679999999999999999999999999 9999999998 68999999999999999999999 799999999999999
Q ss_pred ccccc
Q 011105 195 AAQAK 199 (493)
Q Consensus 195 ~~~~~ 199 (493)
++.+.
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 88754
No 204
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=5e-17 Score=127.43 Aligned_cols=78 Identities=22% Similarity=0.331 Sum_probs=73.5
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
++|||+|||+.+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|+..||+..|.|++|+|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999987 4799999999999999999999999999999999999987
Q ss_pred Ccc
Q 011105 374 ADQ 376 (493)
Q Consensus 374 ~~~ 376 (493)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 644
No 205
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.70 E-value=9.8e-17 Score=134.04 Aligned_cols=81 Identities=27% Similarity=0.465 Sum_probs=76.4
Q ss_pred ccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q 011105 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (493)
Q Consensus 290 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 369 (493)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|+..||+..|.|++|+|.|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 33468999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 011105 370 A 370 (493)
Q Consensus 370 a 370 (493)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 206
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.9e-17 Score=124.33 Aligned_cols=81 Identities=23% Similarity=0.434 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+...++|||+|||+++|+++|+++|+.| .|..|+|+.+ .+++++|||||+|.+.++|.+||. ||+..|.|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567899999999999999999999999 9999999999 779999999999999999999999 999999999999998
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+.+.
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8754
No 207
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.1e-17 Score=126.41 Aligned_cols=81 Identities=23% Similarity=0.254 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEE
Q 011105 117 PHGSEVYLGGIPHDASDDDLR----HFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK 192 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~ 192 (493)
...++|||+|||+++++++|+ ++|++||.|.+|+|+.++.+ ++||||+|.+.++|.+||+.||+..|.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456899999999999999999 99999999999999998764 88999999999999999999999999999999
Q ss_pred Eecccccc
Q 011105 193 CSAAQAKH 200 (493)
Q Consensus 193 V~~~~~~~ 200 (493)
|.++.+..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99987543
No 208
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=8.7e-17 Score=129.11 Aligned_cols=82 Identities=24% Similarity=0.328 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|.+||.|..|+|+.++. +.++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 34578999999999999999999999999999999999974 99999999999999999999999999999999999998
Q ss_pred ccc
Q 011105 196 AQA 198 (493)
Q Consensus 196 ~~~ 198 (493)
+..
T Consensus 91 a~~ 93 (114)
T 2do0_A 91 DER 93 (114)
T ss_dssp CSC
T ss_pred ccc
Confidence 864
No 209
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.70 E-value=2.1e-17 Score=135.60 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGE---VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK 192 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~ 192 (493)
....++|||+|||+++|+++|+++|+.||. |..|+|+.++. ++++|||||+|.+.++|.+||+ +|+..|.||.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 456789999999999999999999999999 89999999988 9999999999999999999999 999999999999
Q ss_pred Eeccccc
Q 011105 193 CSAAQAK 199 (493)
Q Consensus 193 V~~~~~~ 199 (493)
|.++...
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9888643
No 210
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-16 Score=122.92 Aligned_cols=76 Identities=33% Similarity=0.571 Sum_probs=71.2
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcC--CcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 369 (493)
..++|||+|||+.+|+++|+++|++| |.|..|.+. +|||||+|.+.++|.+||..||+..|.|++|+|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45899999999999999999999999 999999885 57999999999999999999999999999999999
Q ss_pred cCCCCc
Q 011105 370 AKPQAD 375 (493)
Q Consensus 370 a~~~~~ 375 (493)
++++..
T Consensus 86 a~~~~~ 91 (99)
T 2cpd_A 86 AKPVDK 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 988754
No 211
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=5.7e-17 Score=131.44 Aligned_cols=81 Identities=19% Similarity=0.397 Sum_probs=73.5
Q ss_pred cceEEEccCCCCCCHHHHH----HHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q 011105 293 VKALYVKNLPKDITQDRLK----ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 368 (493)
.++|||+|||+.+++++|+ ++|++||.|..|.+.+ ++.++|||||+|.+.++|..|+..|||..|.|++|+|.
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 4899999999999999876 6999999999999865 45679999999999999999999999999999999999
Q ss_pred ecCCCCcc
Q 011105 369 LAKPQADQ 376 (493)
Q Consensus 369 ~a~~~~~~ 376 (493)
||.++...
T Consensus 106 ~a~~~~~~ 113 (127)
T 2a3j_A 106 FSETPQSQ 113 (127)
T ss_dssp ECCCCCHH
T ss_pred EccCcchh
Confidence 99987543
No 212
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=7.3e-17 Score=125.93 Aligned_cols=80 Identities=30% Similarity=0.484 Sum_probs=74.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 291 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
...++|||+|||+.+|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|+..||+..|.|++|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 34589999999999999999999999999999999865 689999999999999999999999999999999999
Q ss_pred CCCCcc
Q 011105 371 KPQADQ 376 (493)
Q Consensus 371 ~~~~~~ 376 (493)
.++...
T Consensus 87 ~~~~~~ 92 (99)
T 2cpj_A 87 CHSASL 92 (99)
T ss_dssp SCCSCC
T ss_pred CCCCCC
Confidence 987554
No 213
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=8.7e-17 Score=131.11 Aligned_cols=84 Identities=18% Similarity=0.340 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
...+++|||+|||+++++++|+++|+.||.|..|+|+.++ +++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+....
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 87643
No 214
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=125.90 Aligned_cols=83 Identities=24% Similarity=0.517 Sum_probs=77.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+||. ++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4467899999999999999999999999999999999999999999999999999999999998 46789999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 87654
No 215
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=6.8e-17 Score=127.84 Aligned_cols=81 Identities=27% Similarity=0.459 Sum_probs=72.5
Q ss_pred ccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q 011105 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (493)
Q Consensus 288 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 367 (493)
......++|||+|||+.+|+++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..||+..|.|++|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 334446899999999999999999999999999999997 589999999999999999999999999999999
Q ss_pred EecCCCCcc
Q 011105 368 SLAKPQADQ 376 (493)
Q Consensus 368 ~~a~~~~~~ 376 (493)
.++.++..+
T Consensus 98 ~~a~~~~~r 106 (108)
T 2jvo_A 98 VYSKLPAKR 106 (108)
T ss_dssp ESCSCCC--
T ss_pred EEecCCCCC
Confidence 999887543
No 216
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.4e-17 Score=129.17 Aligned_cols=86 Identities=22% Similarity=0.399 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEe-eCCCCCCcceEEEEEeccHHHHHHHHHHhC--CCcccCceE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGE-VTEVRIM-KGKDSGEAKGYAFVTFRTKELASQAIEELN--SCELKGKKI 191 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~-v~~v~i~-~~~~~g~~~g~afV~F~~~e~A~~Al~~l~--~~~i~g~~i 191 (493)
....++|||+|||+++|+++|+++|..||. |..|.|+ .++.++.++|||||+|.+.++|.+|++.|+ +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 456789999999999999999999999998 9999998 788889999999999999999999999996 589999999
Q ss_pred EEeccccccc
Q 011105 192 KCSAAQAKHR 201 (493)
Q Consensus 192 ~V~~~~~~~~ 201 (493)
.|.++.++..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999986543
No 217
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.4e-17 Score=129.89 Aligned_cols=86 Identities=21% Similarity=0.322 Sum_probs=78.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHhhccCCeeEEEEeeCCCCC---CcceEEEEEeccHHHHHHHHHHhCCCcccCce
Q 011105 117 PHGSEVYLGGIPHDASDDDLR---HFCKSIGEVTEVRIMKGKDSG---EAKGYAFVTFRTKELASQAIEELNSCELKGKK 190 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~---~~f~~~G~v~~v~i~~~~~~g---~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~ 190 (493)
...++|||+|||+++++++|+ ++|++||.|..|.|+.+..++ +++|||||+|.+.++|.+||+.||+..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 456899999999999999999 999999999999999987644 56699999999999999999999999999999
Q ss_pred EEEecccccccc
Q 011105 191 IKCSAAQAKHRL 202 (493)
Q Consensus 191 i~V~~~~~~~~l 202 (493)
|+|.++.++.+.
T Consensus 93 l~V~~a~~k~~~ 104 (111)
T 2cpi_A 93 LKASLGTTKYCS 104 (111)
T ss_dssp EEEESCCCCSCS
T ss_pred EEEEeccccccc
Confidence 999999877643
No 218
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.6e-17 Score=127.66 Aligned_cols=82 Identities=16% Similarity=0.378 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|++||.|..|.|..+ +.+++||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999665 56899999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.+..
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 87643
No 219
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=3e-17 Score=132.26 Aligned_cols=82 Identities=21% Similarity=0.327 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGE---VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK 192 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~ 192 (493)
....++|||+|||+++|+++|+++|+.||. |..|+|+.++. ++++|||||+|.+.++|.+||+ +|+..|.|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345789999999999999999999999999 89999999987 9999999999999999999999 999999999999
Q ss_pred Eeccccc
Q 011105 193 CSAAQAK 199 (493)
Q Consensus 193 V~~~~~~ 199 (493)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9888643
No 220
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.7e-17 Score=129.28 Aligned_cols=84 Identities=21% Similarity=0.381 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCC--CcccCceEE
Q 011105 116 PPHGSEVYLGGIPHD-ASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS--CELKGKKIK 192 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~-~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~--~~i~g~~i~ 192 (493)
...+++|||+|||++ +|+++|+++|++||.|.+|+|++ ++|||||+|.+.++|.+|++.|++ ..|.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456889999999998 99999999999999999999974 468999999999999999998864 569999999
Q ss_pred Eeccccccccccc
Q 011105 193 CSAAQAKHRLFIG 205 (493)
Q Consensus 193 V~~~~~~~~l~v~ 205 (493)
|.++..+..+.++
T Consensus 96 V~~a~~~~~~~~~ 108 (112)
T 1x4f_A 96 VDLSEKYKKLVSG 108 (112)
T ss_dssp EEEECSCSSSSCC
T ss_pred EEECccccccccC
Confidence 9999887766543
No 221
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.2e-17 Score=132.40 Aligned_cols=83 Identities=17% Similarity=0.261 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCe-eEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEe
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEV-TEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v-~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~ 194 (493)
+...++|||+|||+++|+++|+++|+.||.| ..|+|+.++ +++++|||||+|.+.++|.+||+. |+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4567899999999999999999999999999 899999998 899999999999999999999985 9999999999999
Q ss_pred cccccc
Q 011105 195 AAQAKH 200 (493)
Q Consensus 195 ~~~~~~ 200 (493)
++..+.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987543
No 222
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-16 Score=121.63 Aligned_cols=77 Identities=21% Similarity=0.437 Sum_probs=71.5
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+|+++|+++|++||.|..|.|++ +||||+|.+.++|.+|+..||+..|.|++|+|.++.
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 348999999999999999999999999999999973 499999999999999999999999999999999998
Q ss_pred CCCcc
Q 011105 372 PQADQ 376 (493)
Q Consensus 372 ~~~~~ 376 (493)
++...
T Consensus 80 ~~~~~ 84 (90)
T 2dnp_A 80 KGQKK 84 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87443
No 223
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.69 E-value=2.9e-17 Score=135.20 Aligned_cols=83 Identities=20% Similarity=0.341 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--EEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCC----cccCce
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTE--VRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSC----ELKGKK 190 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~--v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~----~i~g~~ 190 (493)
...++|||+|||+++|+++|+++|++||.|.. |+|++++.+++++|||||+|.+. +|.+|+..||+. .|.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 35679999999999999999999999999977 99999999999999999999999 999999999999 999999
Q ss_pred EEEecccccc
Q 011105 191 IKCSAAQAKH 200 (493)
Q Consensus 191 i~V~~~~~~~ 200 (493)
|.|.++.+..
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997654
No 224
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.7e-18 Score=139.53 Aligned_cols=84 Identities=20% Similarity=0.307 Sum_probs=79.4
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEE--------EEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeE
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITK--------VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV 364 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~ 364 (493)
.++|||+|||+.+++++|+++|++||.|.. |+|+.++.++.++|||||+|.+.++|.+||..||+..|.|++
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 86 (116)
Confidence 489999999999999999999999999998 999999888889999999999999999999999999999999
Q ss_pred EEEEecCCCCcc
Q 011105 365 LDCSLAKPQADQ 376 (493)
Q Consensus 365 i~v~~a~~~~~~ 376 (493)
|+|.++.++...
T Consensus 87 l~V~~a~~~~~~ 98 (116)
T 2lcw_A 87 IKVSFATRRADF 98 (116)
Confidence 999999887543
No 225
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.69 E-value=1.2e-17 Score=127.97 Aligned_cols=80 Identities=23% Similarity=0.576 Sum_probs=74.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccccc
Q 011105 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~~ 199 (493)
++|||+|||+++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.+ |.+|+..||+..|.|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999998765
Q ss_pred c
Q 011105 200 H 200 (493)
Q Consensus 200 ~ 200 (493)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 226
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=7.6e-17 Score=125.82 Aligned_cols=85 Identities=29% Similarity=0.527 Sum_probs=78.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|++||.|..|++.++ +|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 456789999999999999999999999999999999754 68999999999999999999999999999999999
Q ss_pred ccccccccccC
Q 011105 196 AQAKHRLFIGN 206 (493)
Q Consensus 196 ~~~~~~l~v~~ 206 (493)
+.++..+.+++
T Consensus 86 a~~~~~~~~g~ 96 (99)
T 2cpj_A 86 ACHSASLTSGP 96 (99)
T ss_dssp SSCCSCCCCCC
T ss_pred cCCCCCCCCCC
Confidence 99888777664
No 227
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.3e-17 Score=129.90 Aligned_cols=81 Identities=17% Similarity=0.335 Sum_probs=76.3
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcee--------cCe
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI--------DGQ 363 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~--------~g~ 363 (493)
..++|||+|||+.+|+++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+||..||+..| .++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 34899999999999999999999999999999999998 788899999999999999999999999999 678
Q ss_pred EEEEEecCCC
Q 011105 364 VLDCSLAKPQ 373 (493)
Q Consensus 364 ~i~v~~a~~~ 373 (493)
+|.|.|+.|+
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999875
No 228
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=1.5e-16 Score=126.74 Aligned_cols=75 Identities=19% Similarity=0.410 Sum_probs=70.5
Q ss_pred cceEEEccCCCC-CCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 293 VKALYVKNLPKD-ITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 293 ~~~l~v~nl~~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
.++|||+|||+. +++++|+++|++||.|..|.| ++|||||+|.+.++|.+|+..||+..|.|++|+|.++.
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 489999999999 999999999999999999999 37999999999999999999999999999999999998
Q ss_pred CCCc
Q 011105 372 PQAD 375 (493)
Q Consensus 372 ~~~~ 375 (493)
++..
T Consensus 99 ~~~~ 102 (110)
T 1wf1_A 99 EPKP 102 (110)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6544
No 229
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=1.9e-17 Score=135.92 Aligned_cols=81 Identities=11% Similarity=0.170 Sum_probs=76.0
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCc---EEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGK---ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 368 (493)
..++|||+|||+++|+++|+++|+.||. |..|+|++++. ++++|||||+|.+.++|.+||. ||+..|.||+|+|.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 3489999999999999999999999999 88999999988 7889999999999999999999 99999999999999
Q ss_pred ecCCCC
Q 011105 369 LAKPQA 374 (493)
Q Consensus 369 ~a~~~~ 374 (493)
++.++.
T Consensus 121 ~a~~~e 126 (136)
T 2hgl_A 121 KSHRTE 126 (136)
T ss_dssp ECCHHH
T ss_pred ECChHH
Confidence 997654
No 230
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.3e-17 Score=129.67 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=71.5
Q ss_pred cceEEEccCCCC-CCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcC--CceecCeEEEEEe
Q 011105 293 VKALYVKNLPKD-ITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE--KYEIDGQVLDCSL 369 (493)
Q Consensus 293 ~~~l~v~nl~~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~ 369 (493)
.++|||+|||+. +|+++|+++|++||.|.+|+|++. ||||||+|.+.++|.+|+..|+ +..|.||+|+|.|
T Consensus 25 ~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp CCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 589999999998 999999999999999999999754 6999999999999999999885 4669999999999
Q ss_pred cCCCCccC
Q 011105 370 AKPQADQK 377 (493)
Q Consensus 370 a~~~~~~~ 377 (493)
+..+....
T Consensus 99 a~~~~~~~ 106 (112)
T 1x4f_A 99 SEKYKKLV 106 (112)
T ss_dssp ECSCSSSS
T ss_pred Cccccccc
Confidence 98876544
No 231
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.68 E-value=3.2e-17 Score=122.76 Aligned_cols=73 Identities=16% Similarity=0.389 Sum_probs=68.2
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCc-eE
Q 011105 119 GSEVYLGGIPHDA------SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGK-KI 191 (493)
Q Consensus 119 ~~~l~V~nLp~~~------te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~-~i 191 (493)
+++|||+|||+.+ |+++|+++|++||.|.+|.|+ +.+++++|||||+|.+.++|.+|++.||+..|.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 779999999999999999987 46789999999999999999999999999999999 88
Q ss_pred EE
Q 011105 192 KC 193 (493)
Q Consensus 192 ~V 193 (493)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 232
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.68 E-value=3.2e-17 Score=122.77 Aligned_cols=73 Identities=26% Similarity=0.500 Sum_probs=67.7
Q ss_pred ceEEEccCCCCC------CHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCe-EEE
Q 011105 294 KALYVKNLPKDI------TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ-VLD 366 (493)
Q Consensus 294 ~~l~v~nl~~~~------t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~-~i~ 366 (493)
++|||+|||+.+ |+++|+++|++||.|..|.|+ +.++.++|||||+|.+.++|.+|+..||+..|.|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 779999999999999999988 45678899999999999999999999999999999 887
Q ss_pred EE
Q 011105 367 CS 368 (493)
Q Consensus 367 v~ 368 (493)
|+
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 233
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.68 E-value=2.8e-17 Score=132.38 Aligned_cols=81 Identities=11% Similarity=0.184 Sum_probs=75.9
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCc---EEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGK---ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 368 (493)
..++|||+|||+.+|+++|+++|+.||. |..|+|+.++. ++++|||||+|.+.++|.+||. ||+..|.||.|+|.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 3489999999999999999999999999 89999999887 7789999999999999999999 89999999999999
Q ss_pred ecCCCC
Q 011105 369 LAKPQA 374 (493)
Q Consensus 369 ~a~~~~ 374 (493)
++.+..
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 998764
No 234
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.9e-17 Score=127.77 Aligned_cols=79 Identities=23% Similarity=0.358 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCC--CcccCceEEE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS--CELKGKKIKC 193 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~--~~i~g~~i~V 193 (493)
.+.+++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.|++ ..|.|++|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 456789999999999999999999999999999999875 68999999999999999998874 6899999999
Q ss_pred ecccccc
Q 011105 194 SAAQAKH 200 (493)
Q Consensus 194 ~~~~~~~ 200 (493)
.++..+.
T Consensus 102 ~~a~~k~ 108 (119)
T 2ad9_A 102 QFSNHKE 108 (119)
T ss_dssp EECSSSS
T ss_pred EEccCCC
Confidence 9987643
No 235
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.2e-17 Score=130.35 Aligned_cols=81 Identities=21% Similarity=0.520 Sum_probs=76.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecccc
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~ 198 (493)
.++|||+|||+++|+++|+++|..||.|..|+|+.++.++.++|||||+|.+.++|.+||+. ++..|.|+.|.|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 47899999999999999999999999999999999999999999999999999999999996 99999999999999876
Q ss_pred cc
Q 011105 199 KH 200 (493)
Q Consensus 199 ~~ 200 (493)
+.
T Consensus 106 ~~ 107 (116)
T 1x4b_A 106 RE 107 (116)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 236
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=5.3e-17 Score=127.92 Aligned_cols=79 Identities=23% Similarity=0.403 Sum_probs=73.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecccc
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~ 198 (493)
.++|||+|||+++|+++|+++|+.| .|..|+|+.++. |+++|||||+|.+.++|.+||. +|+..|.||.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 899999999976 9999999999999999999994 999999999999988865
Q ss_pred cc
Q 011105 199 KH 200 (493)
Q Consensus 199 ~~ 200 (493)
..
T Consensus 93 ~~ 94 (109)
T 2dnn_A 93 RQ 94 (109)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 237
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=5e-17 Score=128.18 Aligned_cols=81 Identities=15% Similarity=0.310 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCc-
Q 011105 117 PHGSEVYLGGIPHDA------SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGK- 189 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~------te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~- 189 (493)
..+++|||+|||+.+ |+++|+++|++||.|..|.|+ +.+|+++|||||+|.+.++|.+||..||+..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346899999999999 789999999999999999988 46799999999999999999999999999999998
Q ss_pred eEEEeccccc
Q 011105 190 KIKCSAAQAK 199 (493)
Q Consensus 190 ~i~V~~~~~~ 199 (493)
.|+|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999988653
No 238
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=2.7e-17 Score=121.27 Aligned_cols=75 Identities=17% Similarity=0.420 Sum_probs=71.8
Q ss_pred eEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 295 ~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
+|||+|||+.+|+++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+.. ++..|.|++|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999995 899999999999886
No 239
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=1.6e-17 Score=136.66 Aligned_cols=81 Identities=15% Similarity=0.228 Sum_probs=74.7
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+++|+++|+++|++|| |+.|+|++++. ++++|||||+|.+.++|.+|| .+|+..|.||.|.|.++.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 348999999999999999999999999 67999999987 778999999999999999999 689999999999999998
Q ss_pred CCCc
Q 011105 372 PQAD 375 (493)
Q Consensus 372 ~~~~ 375 (493)
+...
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7643
No 240
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=5.7e-17 Score=125.61 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCC--cccCceEEE
Q 011105 117 PHGSEVYLGGIPH-DASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSC--ELKGKKIKC 193 (493)
Q Consensus 117 ~~~~~l~V~nLp~-~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~--~i~g~~i~V 193 (493)
..+++|||+|||+ ++|+++|+++|++||.|.+|+|+++ ++||||+|.+.++|.+|++.|++. .|.|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4678999999999 9999999999999999999999865 479999999999999999998864 499999999
Q ss_pred ecccccccc
Q 011105 194 SAAQAKHRL 202 (493)
Q Consensus 194 ~~~~~~~~l 202 (493)
.++.....+
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x4d_A 87 HLSQKYKRI 95 (102)
T ss_dssp EEECCCTTS
T ss_pred EECCCCCCC
Confidence 999876554
No 241
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.9e-17 Score=133.22 Aligned_cols=82 Identities=24% Similarity=0.384 Sum_probs=73.4
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcE----EEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKI----TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v----~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 367 (493)
..++|||+|||+.+|+++|+++|+.||.| ..+.+. ++.++|||||+|.+.++|.+||..||+..|.|++|+|
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 35899999999999999999999999998 455554 5667899999999999999999999999999999999
Q ss_pred EecCCCCccC
Q 011105 368 SLAKPQADQK 377 (493)
Q Consensus 368 ~~a~~~~~~~ 377 (493)
.|+.++..+.
T Consensus 100 ~~a~~~~~~~ 109 (115)
T 2cpx_A 100 EFGKNKKQRS 109 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEccCCCCCC
Confidence 9999876543
No 242
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.4e-17 Score=124.03 Aligned_cols=78 Identities=23% Similarity=0.505 Sum_probs=69.9
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCc-EEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ceecCeEEEEEe
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGK-ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK-YEIDGQVLDCSL 369 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~-v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~-~~~~g~~i~v~~ 369 (493)
..++|||+|||+.+|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||+ ..|.|++|+|.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 3489999999999999999999999999 6666552 379999999999999999999999 999999999999
Q ss_pred cCCCCcc
Q 011105 370 AKPQADQ 376 (493)
Q Consensus 370 a~~~~~~ 376 (493)
+.++..+
T Consensus 80 a~~~~~~ 86 (93)
T 2cqh_A 80 SVSKKLR 86 (93)
T ss_dssp CCCCCCC
T ss_pred ccCcccc
Confidence 9887543
No 243
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=123.93 Aligned_cols=79 Identities=19% Similarity=0.323 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhC--CCcccCceEEE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN--SCELKGKKIKC 193 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~--~~~i~g~~i~V 193 (493)
.+.+++|||+|||+++|+++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|++.|+ +..|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 346789999999999999999999999999999998864 6899999999999999999764 67799999999
Q ss_pred ecccccc
Q 011105 194 SAAQAKH 200 (493)
Q Consensus 194 ~~~~~~~ 200 (493)
.++..+.
T Consensus 86 ~~a~~~~ 92 (101)
T 2cq1_A 86 QYSNHKE 92 (101)
T ss_dssp EECSCSS
T ss_pred EEcCccc
Confidence 9987543
No 244
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.4e-17 Score=134.36 Aligned_cols=84 Identities=24% Similarity=0.328 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|+.||.|..+.++.+..+++++|||||+|.+.++|.+||+ ||+..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4466899999999999999999999999999987777777789999999999999999999999 999999999999998
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+..+.
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87543
No 245
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.9e-16 Score=127.03 Aligned_cols=81 Identities=20% Similarity=0.460 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcc--------cC
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL--------KG 188 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i--------~g 188 (493)
...++|||+|||+++|+++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+||+.||+..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 456899999999999999999999999999999999998 799999999999999999999999999999 57
Q ss_pred ceEEEecccc
Q 011105 189 KKIKCSAAQA 198 (493)
Q Consensus 189 ~~i~V~~~~~ 198 (493)
++|.|.++.+
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 7788887764
No 246
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-17 Score=130.50 Aligned_cols=83 Identities=16% Similarity=0.189 Sum_probs=76.4
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+|+++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|.+||+ ||+..|.|++|+|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 3489999999999999999999999999988 777777778889999999999999999999 99999999999999998
Q ss_pred CCCcc
Q 011105 372 PQADQ 376 (493)
Q Consensus 372 ~~~~~ 376 (493)
++..+
T Consensus 94 ~~~~~ 98 (101)
T 1fj7_A 94 GRDGT 98 (101)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87554
No 247
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=3.4e-17 Score=120.76 Aligned_cols=75 Identities=20% Similarity=0.512 Sum_probs=71.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 121 ~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
+|||+|||+++|+++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++ +++..|.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999998 6899999999998764
No 248
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=2.7e-16 Score=121.86 Aligned_cols=76 Identities=22% Similarity=0.420 Sum_probs=70.8
Q ss_pred cccceEEEccCCC-CCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q 011105 291 SQVKALYVKNLPK-DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (493)
Q Consensus 291 ~~~~~l~v~nl~~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 369 (493)
...++|||+|||+ .+++++|+++|+.||.|..|+|. +|||||+|.+.++|.+|+..||+..|.|++|+|.+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3458999999998 99999999999999999999993 68999999999999999999999999999999999
Q ss_pred cCCCC
Q 011105 370 AKPQA 374 (493)
Q Consensus 370 a~~~~ 374 (493)
++++.
T Consensus 92 a~~~~ 96 (97)
T 2xnq_A 92 SSSNA 96 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98753
No 249
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=133.37 Aligned_cols=81 Identities=28% Similarity=0.532 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c
Q 011105 196 A 196 (493)
Q Consensus 196 ~ 196 (493)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 4
No 250
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=8e-17 Score=126.24 Aligned_cols=75 Identities=21% Similarity=0.359 Sum_probs=70.8
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+.+++++|+++|+.||.|..|++++ ++|||||+|.+.++|.+|+..||+..|.|++|+|.|+++
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 48999999999999999999999999999999983 379999999999999999999999999999999999987
Q ss_pred C
Q 011105 373 Q 373 (493)
Q Consensus 373 ~ 373 (493)
+
T Consensus 101 ~ 101 (101)
T 2la4_A 101 R 101 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 251
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.68 E-value=2.9e-17 Score=135.55 Aligned_cols=84 Identities=24% Similarity=0.421 Sum_probs=79.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|+.||.|..|+|+.++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+.+.
T Consensus 124 a~~~ 127 (135)
T 2lea_A 124 ARYG 127 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 252
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9.2e-17 Score=127.51 Aligned_cols=82 Identities=29% Similarity=0.505 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||.++|+++|+++|++||.|..|+|+.++ +.++|||||+|.+.++|.+|++.|++..|.|+.|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999886 45899999999999999999999999999999999998
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8754
No 253
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=119.95 Aligned_cols=74 Identities=26% Similarity=0.493 Sum_probs=69.8
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhc-CCceecCeEEEEEec
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT-EKYEIDGQVLDCSLA 370 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l-~~~~~~g~~i~v~~a 370 (493)
..++|||+|||+.+++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|+..| ++..|.|++|+|.|+
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 4589999999999999999999999999999999874 699999999999999999998 999999999999998
Q ss_pred C
Q 011105 371 K 371 (493)
Q Consensus 371 ~ 371 (493)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 254
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=7.7e-17 Score=124.92 Aligned_cols=76 Identities=22% Similarity=0.417 Sum_probs=70.8
Q ss_pred cceEEEccCCC-CCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 293 VKALYVKNLPK-DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 293 ~~~l~v~nl~~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
.++|||+|||+ .+|+++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..||+..|.|++|+|.++.
T Consensus 10 ~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 10 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp CEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 48999999998 99999999999999999999993 6899999999999999999999999999999999998
Q ss_pred CCCcc
Q 011105 372 PQADQ 376 (493)
Q Consensus 372 ~~~~~ 376 (493)
++...
T Consensus 82 ~~~~~ 86 (96)
T 2kvi_A 82 SNARP 86 (96)
T ss_dssp CCCC-
T ss_pred cCCCC
Confidence 87543
No 255
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=1.1e-16 Score=130.61 Aligned_cols=80 Identities=25% Similarity=0.516 Sum_probs=76.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecccc
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~ 198 (493)
.++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|| .||+..|.|+.|.|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 479999999999999999999999999999999999889999999999999999999999 6999999999999998875
Q ss_pred c
Q 011105 199 K 199 (493)
Q Consensus 199 ~ 199 (493)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 256
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=123.81 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCC--cccCceEEE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSC--ELKGKKIKC 193 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~--~i~g~~i~V 193 (493)
.+.+++|||+|||+++|+++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|++.|++. .|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345789999999999999999999999999999998764 689999999999999999988754 599999999
Q ss_pred ecccccc
Q 011105 194 SAAQAKH 200 (493)
Q Consensus 194 ~~~~~~~ 200 (493)
.++..+.
T Consensus 86 ~~a~~~~ 92 (104)
T 1wex_A 86 NYSTSKR 92 (104)
T ss_dssp EECSSSS
T ss_pred EEccCcc
Confidence 9997654
No 257
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.67 E-value=1.4e-16 Score=135.99 Aligned_cols=84 Identities=24% Similarity=0.421 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|+.||.|..|+|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+.+.
T Consensus 147 a~~~ 150 (158)
T 2kn4_A 147 ARYG 150 (158)
T ss_dssp ECCS
T ss_pred CCCC
Confidence 8754
No 258
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1e-16 Score=124.53 Aligned_cols=79 Identities=24% Similarity=0.417 Sum_probs=71.1
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+|+++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|+..||+..|.|++|+|.++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 358999999999999999999999999996 566543 458999999999999999999999999999999999998
Q ss_pred CCCc
Q 011105 372 PQAD 375 (493)
Q Consensus 372 ~~~~ 375 (493)
++..
T Consensus 93 ~~~~ 96 (97)
T 2e5j_A 93 QQRD 96 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8743
No 259
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-16 Score=126.56 Aligned_cols=76 Identities=22% Similarity=0.302 Sum_probs=71.2
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+.+|+++|+++|++||.|..|.|++ ++|||||+|.+.++|.+||..||+..|.|++|.|.|+..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 37999999999999999999999999999999985 368999999999999999999999999999999999976
Q ss_pred CC
Q 011105 373 QA 374 (493)
Q Consensus 373 ~~ 374 (493)
..
T Consensus 84 ~~ 85 (111)
T 1whx_A 84 GV 85 (111)
T ss_dssp TT
T ss_pred Cc
Confidence 53
No 260
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.67 E-value=4.1e-17 Score=129.12 Aligned_cols=82 Identities=12% Similarity=0.241 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCC---eeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGE---VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK 192 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~ 192 (493)
....++|||+|||+++|+++|+++|+.||. |..|+|+.++. ++++|||||+|.+.++|.+||+ +|+..|.|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 456789999999999999999999999998 89999999988 9999999999999999999999 999999999999
Q ss_pred Eeccccc
Q 011105 193 CSAAQAK 199 (493)
Q Consensus 193 V~~~~~~ 199 (493)
|.++...
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9887653
No 261
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=9.2e-17 Score=126.76 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEE
Q 011105 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIG-EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC 193 (493)
Q Consensus 115 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V 193 (493)
.+...++|||+|||+++|+++|+++|++|| .|..|.|+.+ .++|||||+|.+.++|.+||+.||+..|.|+.|+|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 356678999999999999999999999999 8999988643 47899999999999999999999999999999999
Q ss_pred ecccc
Q 011105 194 SAAQA 198 (493)
Q Consensus 194 ~~~~~ 198 (493)
.++..
T Consensus 100 ~~a~~ 104 (111)
T 2jvr_A 100 ERDDN 104 (111)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 98864
No 262
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=1.4e-16 Score=123.88 Aligned_cols=80 Identities=28% Similarity=0.485 Sum_probs=74.1
Q ss_pred cceEEEccCCCCCCHHHHH----HHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q 011105 293 VKALYVKNLPKDITQDRLK----ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 368 (493)
.++|||+|||+.+++++|+ ++|++||.|..|.+++ ++.++|||||+|.+.++|.+|+..||+..|.|++|+|.
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4899999999999999999 9999999999999973 35568999999999999999999999999999999999
Q ss_pred ecCCCCc
Q 011105 369 LAKPQAD 375 (493)
Q Consensus 369 ~a~~~~~ 375 (493)
++.++..
T Consensus 85 ~a~~~~~ 91 (97)
T 1nu4_A 85 YAKTDSD 91 (97)
T ss_dssp ECSSCCT
T ss_pred EccCCCc
Confidence 9998754
No 263
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.67 E-value=3.4e-17 Score=129.58 Aligned_cols=81 Identities=11% Similarity=0.163 Sum_probs=76.2
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCc---EEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGK---ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 368 (493)
..++|||+|||+.+|+++|+++|+.||. |..|+|+.++. +.++|||||+|.+.++|.+||. ||+..|.||.|.|.
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 3489999999999999999999999998 89999999988 7889999999999999999999 89999999999999
Q ss_pred ecCCCC
Q 011105 369 LAKPQA 374 (493)
Q Consensus 369 ~a~~~~ 374 (493)
++.++.
T Consensus 88 ~a~~~~ 93 (107)
T 2lmi_A 88 EINNED 93 (107)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 998764
No 264
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.5e-16 Score=119.68 Aligned_cols=77 Identities=29% Similarity=0.567 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+...++|||+|||+++|+++|+++|++||.|..|+|+ ++||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999997 47999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.++.
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87654
No 265
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-16 Score=123.93 Aligned_cols=80 Identities=26% Similarity=0.400 Sum_probs=72.2
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..||+..|.|++|.|.++.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 34899999999999999999999999988766 4456679999999999999999999999999999999999998
Q ss_pred CCCcc
Q 011105 372 PQADQ 376 (493)
Q Consensus 372 ~~~~~ 376 (493)
++...
T Consensus 90 ~~~~~ 94 (96)
T 1fjc_A 90 EKGGT 94 (96)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87543
No 266
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=6.8e-17 Score=130.05 Aligned_cols=81 Identities=21% Similarity=0.280 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCe----eEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEV----TEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v----~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i 191 (493)
....++|||+|||+++|+++|+++|++||.| ..|+|+.+. +++++|||||+|.+.++|.+||+ +|+..|.+|.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~-~~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALR-KHKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHT-TTTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeeCCeEE
Confidence 3567899999999999999999999999986 689999984 79999999999999999999998 59999999999
Q ss_pred EEecccc
Q 011105 192 KCSAAQA 198 (493)
Q Consensus 192 ~V~~~~~ 198 (493)
.|..+..
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9987754
No 267
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=1.5e-16 Score=121.14 Aligned_cols=84 Identities=20% Similarity=0.311 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
...++|||+|||+++|+++|+++|++| .|..|+|. +++|||||+|.+.++|.+|++.||+..|.|++|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 457899999999999999999999999 99999984 57899999999999999999999999999999999999
Q ss_pred cccccccccCC
Q 011105 197 QAKHRLFIGNV 207 (493)
Q Consensus 197 ~~~~~l~v~~l 207 (493)
.....+++.|.
T Consensus 76 ~~~~~~~~~n~ 86 (88)
T 1wg1_A 76 PTDALLCSGPS 86 (88)
T ss_dssp CCCCCCSCCCT
T ss_pred CCCceEecCCC
Confidence 88888777763
No 268
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=2.5e-16 Score=127.66 Aligned_cols=83 Identities=17% Similarity=0.347 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLR----HFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i 191 (493)
....++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|.+|+..||+..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999999876 6999999999988754 47899999999999999999999999999999999
Q ss_pred EEeccccccc
Q 011105 192 KCSAAQAKHR 201 (493)
Q Consensus 192 ~V~~~~~~~~ 201 (493)
+|.++..+..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999986543
No 269
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.66 E-value=9.4e-17 Score=129.45 Aligned_cols=80 Identities=21% Similarity=0.414 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCee--EEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVT--EVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC 193 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~--~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V 193 (493)
+...++|||+|||+++|+++|+++|+.| .|+ .|+|+.++. |+++|||||+|.+.++|.+||+ +++..|.||.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 4567899999999999999999999999 677 899999988 9999999999999999999998 5789999999999
Q ss_pred ecccc
Q 011105 194 SAAQA 198 (493)
Q Consensus 194 ~~~~~ 198 (493)
..+..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 270
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.7e-16 Score=121.38 Aligned_cols=79 Identities=15% Similarity=0.371 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCccc--CceEEE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK--GKKIKC 193 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~--g~~i~V 193 (493)
+...++|||+|||+++|+++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|++.||+..|. |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 456789999999999999999999999999999999754 689999999999999999999999999 999999
Q ss_pred ecccccc
Q 011105 194 SAAQAKH 200 (493)
Q Consensus 194 ~~~~~~~ 200 (493)
.++.++.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9987653
No 271
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.8e-17 Score=135.13 Aligned_cols=82 Identities=16% Similarity=0.265 Sum_probs=75.6
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|||+.+|+++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+||. ||+..|.|++|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 34899999999999999999999999999886666667788889999999999999999999 99999999999999998
Q ss_pred CCC
Q 011105 372 PQA 374 (493)
Q Consensus 372 ~~~ 374 (493)
++.
T Consensus 103 ~~~ 105 (124)
T 1wel_A 103 KKG 105 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 272
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=3e-16 Score=122.96 Aligned_cols=79 Identities=25% Similarity=0.520 Sum_probs=72.7
Q ss_pred cCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEE
Q 011105 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC 193 (493)
Q Consensus 114 ~~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V 193 (493)
..+...++|||+|||+++|+++|+++|+.||.|.+|+++ +++|||||+|.+.++|.+|+..||+..|.|+.|+|
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345567999999999999999999999999999999997 35789999999999999999999999999999999
Q ss_pred ecccc
Q 011105 194 SAAQA 198 (493)
Q Consensus 194 ~~~~~ 198 (493)
.++.+
T Consensus 96 ~~a~~ 100 (101)
T 2la4_A 96 GWGKE 100 (101)
T ss_dssp CBCCC
T ss_pred EeccC
Confidence 98864
No 273
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.7e-16 Score=122.71 Aligned_cols=78 Identities=15% Similarity=0.322 Sum_probs=70.8
Q ss_pred cceEEE--ccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcee-----cCeEE
Q 011105 293 VKALYV--KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI-----DGQVL 365 (493)
Q Consensus 293 ~~~l~v--~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~-----~g~~i 365 (493)
+++||| +||++.+|+++|+++|++||.|..|.|+.+ ||||||+|.+.++|.+|+..|||..| .+++|
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 478999 669999999999999999999999998753 68999999999999999999999998 78999
Q ss_pred EEEecCCCCcc
Q 011105 366 DCSLAKPQADQ 376 (493)
Q Consensus 366 ~v~~a~~~~~~ 376 (493)
.|.|+......
T Consensus 99 ~v~~a~~~p~~ 109 (114)
T 2cq2_A 99 YLNFVEKVQWS 109 (114)
T ss_dssp EEEEESCCCCS
T ss_pred EEEecccCccc
Confidence 99999866443
No 274
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.66 E-value=2.9e-16 Score=126.19 Aligned_cols=81 Identities=17% Similarity=0.342 Sum_probs=74.6
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+.+|+++|+++|+.||.|..|.|+.+.. ++|||||+|.+.++|.+|+..||+..|.|+.|.|.|+.+
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE---TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT---TTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 48999999999999999999999999999999987643 389999999999999999999999999999999999987
Q ss_pred CCcc
Q 011105 373 QADQ 376 (493)
Q Consensus 373 ~~~~ 376 (493)
+...
T Consensus 85 ~~~~ 88 (115)
T 3lqv_A 85 NRAF 88 (115)
T ss_dssp HHHT
T ss_pred Chhh
Confidence 6443
No 275
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=123.24 Aligned_cols=83 Identities=24% Similarity=0.489 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEe
Q 011105 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (493)
Q Consensus 115 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~ 194 (493)
.+...++|||+|||+++|+++|+++|+.| ..|+++.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35577999999999999999999999977 367888888889999999999999999999999999999999999999
Q ss_pred cccccc
Q 011105 195 AAQAKH 200 (493)
Q Consensus 195 ~~~~~~ 200 (493)
++.++.
T Consensus 88 ~a~~~~ 93 (102)
T 2fc8_A 88 WAKPKG 93 (102)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 987654
No 276
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.6e-16 Score=123.97 Aligned_cols=78 Identities=21% Similarity=0.373 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccC-----ce
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG-----KK 190 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g-----~~ 190 (493)
....++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||+..|.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345789999999999999999999999999999999876 799999999999999999999999999 99
Q ss_pred EEEecccccc
Q 011105 191 IKCSAAQAKH 200 (493)
Q Consensus 191 i~V~~~~~~~ 200 (493)
|.|.++.++.
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999987643
No 277
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-15 Score=117.93 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=70.9
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|| .+|+++|+++|++||.|..|.|. .++|||||+|.+.++|.+||..||+..|.|++|+|.|+.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 3489999996 89999999999999999999995 347999999999999999999999999999999999998
Q ss_pred CCCccC
Q 011105 372 PQADQK 377 (493)
Q Consensus 372 ~~~~~~ 377 (493)
++....
T Consensus 86 ~~~~~~ 91 (97)
T 1x5p_A 86 KQPMLD 91 (97)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 875543
No 278
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.6e-16 Score=123.27 Aligned_cols=81 Identities=21% Similarity=0.420 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+...++|||+|||+++|+++|+++|++||.| +++.+ .+++++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4567999999999999999999999999987 55665 5689999999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.++.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 87653
No 279
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=5.2e-16 Score=124.81 Aligned_cols=80 Identities=21% Similarity=0.314 Sum_probs=72.5
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccE-EEEEeCCHHHHHHHHHhcCCceecC--eEEEEE
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRY-GFVHFAERSSAMKALKNTEKYEIDG--QVLDCS 368 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-~fV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~ 368 (493)
....|||+||++.+|+++|+++|++||.|.+|+|+... +|| |||+|.+.++|.+|+..|||..|.| ++|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 34788899999999999999999999999999997643 577 9999999999999999999999998 999999
Q ss_pred ecCCCCcc
Q 011105 369 LAKPQADQ 376 (493)
Q Consensus 369 ~a~~~~~~ 376 (493)
|+++....
T Consensus 102 ~ak~~~l~ 109 (130)
T 3zzy_A 102 FSKLTSLN 109 (130)
T ss_dssp ECSCSSCC
T ss_pred ecCCCcee
Confidence 99987543
No 280
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-16 Score=124.45 Aligned_cols=81 Identities=32% Similarity=0.602 Sum_probs=74.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEe
Q 011105 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (493)
Q Consensus 115 ~~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~ 194 (493)
.+...++|||+|||+++|+++|+++|+.||.|..|+|+.+ +|||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4567899999999999999999999999999999999876 6899999999999999999999999999999999
Q ss_pred ccccccc
Q 011105 195 AAQAKHR 201 (493)
Q Consensus 195 ~~~~~~~ 201 (493)
++.+...
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9986543
No 281
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=3.1e-17 Score=128.58 Aligned_cols=81 Identities=16% Similarity=0.314 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
...++|||+|||+++|+++|+++|+.||.|.. .++.+..+++++|||||+|.+.++|.+||+ ||+..|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45789999999999999999999999999988 677777779999999999999999999999 9999999999999998
Q ss_pred ccc
Q 011105 197 QAK 199 (493)
Q Consensus 197 ~~~ 199 (493)
.++
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 282
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.65 E-value=6e-17 Score=133.28 Aligned_cols=81 Identities=26% Similarity=0.391 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+...++|||+|||+++|+++|+++|++|| |+.|+|+.++. ++++|||||+|.+.++|.+|| .+|+..|.++.|.|..
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999 77999999987 999999999999999999999 5999999999999988
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+...
T Consensus 120 a~~~ 123 (139)
T 2hgn_A 120 NSTT 123 (139)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7653
No 283
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.65 E-value=3.4e-16 Score=125.43 Aligned_cols=76 Identities=14% Similarity=0.259 Sum_probs=67.6
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeE-----EEE
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV-----LDC 367 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~-----i~v 367 (493)
.++|||+|||+.+|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||+..|.|++ |+|
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 489999999999999999999999999999999876 79999999999999999999999999998 777
Q ss_pred EecCCCCc
Q 011105 368 SLAKPQAD 375 (493)
Q Consensus 368 ~~a~~~~~ 375 (493)
..+.++..
T Consensus 89 ~~~~~~~~ 96 (115)
T 3beg_B 89 KVDGPRSP 96 (115)
T ss_dssp EECC----
T ss_pred ccCCCCCC
Confidence 77776543
No 284
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=1e-16 Score=129.17 Aligned_cols=80 Identities=20% Similarity=0.302 Sum_probs=73.0
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEE--EEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~--~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 369 (493)
..++|||+|||+.+|+++|+++|+.| .|+ .|+|+.++. ++++|||||+|.+.++|.+||.. ++..|.||.|.|.+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 34899999999999999999999999 566 999999988 78899999999999999999985 77999999999999
Q ss_pred cCCCC
Q 011105 370 AKPQA 374 (493)
Q Consensus 370 a~~~~ 374 (493)
+.++.
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87653
No 285
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=8.5e-16 Score=113.92 Aligned_cols=74 Identities=24% Similarity=0.347 Sum_probs=66.3
Q ss_pred ceEEEccCCCCCCHHH----HHHHHhcC-CcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q 011105 294 KALYVKNLPKDITQDR----LKELFAHH-GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~----l~~~f~~~-G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 368 (493)
+.|||+|||+.+++++ |+++|++| |+|.+|. .|+|||.|.+.++|.+|++.|+|..|.||+|+|.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 3499999999999988 55899999 5999981 2899999999999999999999999999999999
Q ss_pred ecCCCCccC
Q 011105 369 LAKPQADQK 377 (493)
Q Consensus 369 ~a~~~~~~~ 377 (493)
||+.+..--
T Consensus 80 ~A~~~sd~~ 88 (96)
T 2diu_A 80 FTPKNRELC 88 (96)
T ss_dssp SSCCSCCCC
T ss_pred ecCCCccee
Confidence 999886643
No 286
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=7e-17 Score=130.01 Aligned_cols=81 Identities=17% Similarity=0.216 Sum_probs=73.9
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcE----EEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKI----TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v----~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 368 (493)
..+|||+|||+.+|+++|+++|++||.| ..|+|+.+. +++++|||||+|.+.++|.+||.. |+..|.+|.|.|.
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 3899999999999999999999999976 689999885 678899999999999999999996 9999999999999
Q ss_pred ecCCCCc
Q 011105 369 LAKPQAD 375 (493)
Q Consensus 369 ~a~~~~~ 375 (493)
.+.++..
T Consensus 101 ~a~~~e~ 107 (123)
T 2dha_A 101 RSTAAEV 107 (123)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9987643
No 287
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=5.5e-16 Score=119.60 Aligned_cols=77 Identities=16% Similarity=0.330 Sum_probs=68.4
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+.+|+++|+++|+.||.|..| +.++.++. ||||+|.+.++|.+||. ||+..|.|+.|.|.++.+
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 4799999999999999999999999999998 33443333 99999999999999999 999999999999999876
Q ss_pred CCc
Q 011105 373 QAD 375 (493)
Q Consensus 373 ~~~ 375 (493)
+..
T Consensus 82 ~~~ 84 (94)
T 2e5g_A 82 KEF 84 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 644
No 288
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=5.6e-16 Score=120.14 Aligned_cols=78 Identities=14% Similarity=0.313 Sum_probs=72.1
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEE-EeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v-~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
.++|||+|||+.+|+++|+++|+.||.|..| .|+.++.+ +.|||+|.+.++|.+|+..||+..|.|++|+|.++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4899999999999999999999999999999 58887654 349999999999999999999999999999999999
Q ss_pred CCC
Q 011105 372 PQA 374 (493)
Q Consensus 372 ~~~ 374 (493)
++.
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 874
No 289
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.6e-16 Score=123.57 Aligned_cols=79 Identities=16% Similarity=0.173 Sum_probs=72.3
Q ss_pred ceEEEccC----CCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCC----HHH----HHHHHH--hcCCce
Q 011105 294 KALYVKNL----PKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE----RSS----AMKALK--NTEKYE 359 (493)
Q Consensus 294 ~~l~v~nl----~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~----~~~----a~~a~~--~l~~~~ 359 (493)
..|||+|| |+.+++..|+++|+.||.|.+|.++.|+.|+.++|||||+|.+ +++ |.+|+. .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 322 889988 789999
Q ss_pred ecCeEEEEEecCC
Q 011105 360 IDGQVLDCSLAKP 372 (493)
Q Consensus 360 ~~g~~i~v~~a~~ 372 (493)
|.||+|+|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998754
No 290
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.2e-16 Score=124.00 Aligned_cols=78 Identities=15% Similarity=0.259 Sum_probs=70.8
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEecc----HHH----HHHHHH--HhCCCc
Q 011105 120 SEVYLGGI----PHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRT----KEL----ASQAIE--ELNSCE 185 (493)
Q Consensus 120 ~~l~V~nL----p~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~----~e~----A~~Al~--~l~~~~ 185 (493)
+.|||+|| |+.+++.+|+++|+.||+|.+|.++.|+.||+++|||||+|.+ ++. |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 322 888988 789999
Q ss_pred ccCceEEEeccc
Q 011105 186 LKGKKIKCSAAQ 197 (493)
Q Consensus 186 i~g~~i~V~~~~ 197 (493)
|.|++|+|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998654
No 291
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=4.3e-16 Score=120.98 Aligned_cols=80 Identities=25% Similarity=0.473 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|+.||.|. +.++. +.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999997 66665 36889999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87643
No 292
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.64 E-value=4.2e-16 Score=134.75 Aligned_cols=84 Identities=29% Similarity=0.428 Sum_probs=78.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 291 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
...++|||+|||+.+++++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+||..||+..|.|++|+|.||
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 345899999999999999999999999999999999998 7888999999999999999999999999999999999999
Q ss_pred CCCCc
Q 011105 371 KPQAD 375 (493)
Q Consensus 371 ~~~~~ 375 (493)
.+...
T Consensus 165 ~~~~~ 169 (177)
T 2f3j_A 165 ASQID 169 (177)
T ss_dssp SSGGG
T ss_pred cCCCC
Confidence 87643
No 293
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.64 E-value=4.7e-16 Score=134.44 Aligned_cols=85 Identities=18% Similarity=0.335 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+..+++|||+|||+.+++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred cccccc
Q 011105 196 AQAKHR 201 (493)
Q Consensus 196 ~~~~~~ 201 (493)
+.....
T Consensus 164 a~~~~~ 169 (177)
T 2f3j_A 164 VASQID 169 (177)
T ss_dssp ESSGGG
T ss_pred ecCCCC
Confidence 876543
No 294
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=5.1e-16 Score=129.71 Aligned_cols=79 Identities=22% Similarity=0.266 Sum_probs=72.0
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecC--eEEEEEec
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLA 370 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~a 370 (493)
..+|||+||++.+|+++|+++|++||.|.+|+|+... ++|||||+|.+.++|.+|+..|||..|.| ++|+|.|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 4789999999999999999999999999999997543 37899999999999999999999999965 99999999
Q ss_pred CCCCc
Q 011105 371 KPQAD 375 (493)
Q Consensus 371 ~~~~~ 375 (493)
+++..
T Consensus 122 k~~~l 126 (164)
T 1sjr_A 122 KLTSL 126 (164)
T ss_dssp SSSSC
T ss_pred cCCcc
Confidence 98754
No 295
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=6.4e-16 Score=116.86 Aligned_cols=76 Identities=22% Similarity=0.464 Sum_probs=70.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHh-CCCcccCceEEEe
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL-NSCELKGKKIKCS 194 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l-~~~~i~g~~i~V~ 194 (493)
....++|||+|||+++|+++|+++|++||.|..|++++ ++|||||+|.+.++|.+|+..| ++..|.|++|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 45678999999999999999999999999999999986 3689999999999999999988 9999999999998
Q ss_pred ccc
Q 011105 195 AAQ 197 (493)
Q Consensus 195 ~~~ 197 (493)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 763
No 296
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.64 E-value=9.2e-16 Score=118.83 Aligned_cols=79 Identities=20% Similarity=0.362 Sum_probs=71.1
Q ss_pred hcCCCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceE
Q 011105 113 LALPPHGSEVYLGGIPH-DASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (493)
Q Consensus 113 ~~~~~~~~~l~V~nLp~-~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i 191 (493)
....+..++|||+|||+ ++++++|+++|+.||.|..|+|. +|||||+|.+.++|.+|+..||+..|.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34456789999999998 99999999999999999999983 6899999999999999999999999999999
Q ss_pred EEeccccc
Q 011105 192 KCSAAQAK 199 (493)
Q Consensus 192 ~V~~~~~~ 199 (493)
+|.++..+
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99988654
No 297
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9e-16 Score=113.79 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCCCCCCCHHH----HHHHhhcc-CCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCce
Q 011105 116 PPHGSEVYLGGIPHDASDDD----LRHFCKSI-GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKK 190 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~----l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~ 190 (493)
++..++|||+|||+++++++ |+++|++| |+|.+| ++ |+|||.|.+.++|.+|++.|++..|.||+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 33445599999999999988 55899999 599998 23 99999999999999999999999999999
Q ss_pred EEEeccccccccccc
Q 011105 191 IKCSAAQAKHRLFIG 205 (493)
Q Consensus 191 i~V~~~~~~~~l~v~ 205 (493)
|+|.+++.++.++..
T Consensus 76 i~v~~A~~~sd~~~~ 90 (96)
T 2diu_A 76 IIVSFTPKNRELCET 90 (96)
T ss_dssp CEEESSCCSCCCCCC
T ss_pred EEEEecCCCcceeEe
Confidence 999999988766543
No 298
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9.7e-17 Score=129.06 Aligned_cols=81 Identities=28% Similarity=0.440 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCe----eEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEV----TEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v----~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i 191 (493)
....++|||+|||+++|+++|+++|+.||.| ..+.+. +++++|||||+|.+.++|.+||+.||+..|.|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3467899999999999999999999999999 455554 68899999999999999999999999999999999
Q ss_pred EEecccccc
Q 011105 192 KCSAAQAKH 200 (493)
Q Consensus 192 ~V~~~~~~~ 200 (493)
.|.++.+..
T Consensus 98 ~v~~a~~~~ 106 (115)
T 2cpx_A 98 VIEFGKNKK 106 (115)
T ss_dssp EEEECCCCS
T ss_pred EEEEccCCC
Confidence 999987654
No 299
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=2e-17 Score=133.24 Aligned_cols=84 Identities=23% Similarity=0.439 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccC
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTE--------VRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG 188 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g 188 (493)
...++|||+|||+++|+++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|.+||+.||+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999999 9999998889999999999999999999999999999999
Q ss_pred ceEEEecccccc
Q 011105 189 KKIKCSAAQAKH 200 (493)
Q Consensus 189 ~~i~V~~~~~~~ 200 (493)
+.|.|.++.++.
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999987654
No 300
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=1.5e-15 Score=115.53 Aligned_cols=74 Identities=26% Similarity=0.458 Sum_probs=62.8
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCce--ecCeEEEEEec
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE--IDGQVLDCSLA 370 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~--~~g~~i~v~~a 370 (493)
.++|||+|||+.+|+++|+++|++||.|.+|+|+++ +||||||+|.+.++|.+ |++.. +.|++|.|.+|
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 489999999999999999999999999999999985 48999999999999984 34444 56999999999
Q ss_pred CCCCc
Q 011105 371 KPQAD 375 (493)
Q Consensus 371 ~~~~~ 375 (493)
.++..
T Consensus 82 ~~k~~ 86 (89)
T 3d2w_A 82 EPKHN 86 (89)
T ss_dssp C----
T ss_pred CCCCc
Confidence 98754
No 301
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.63 E-value=9.3e-16 Score=121.26 Aligned_cols=77 Identities=23% Similarity=0.474 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567999999999999999999999999999999997 58999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+....
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 87643
No 302
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.63 E-value=3e-16 Score=123.18 Aligned_cols=81 Identities=19% Similarity=0.360 Sum_probs=75.3
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+.+++++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+|+. ++..|+|++|.|.++.+
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 4899999999999999999999999999999999998 88889999999999999999998 99999999999999987
Q ss_pred CCcc
Q 011105 373 QADQ 376 (493)
Q Consensus 373 ~~~~ 376 (493)
+...
T Consensus 86 ~~~~ 89 (102)
T 2xs2_A 86 KQNL 89 (102)
T ss_dssp CC--
T ss_pred Ccch
Confidence 6543
No 303
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=117.65 Aligned_cols=77 Identities=27% Similarity=0.464 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+...++|||+|||+++|+++|+++|++||.|..|.+++ +||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45678999999999999999999999999999999974 3999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.++.
T Consensus 79 a~~~~ 83 (92)
T 2dgt_A 79 STSRL 83 (92)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 97654
No 304
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=116.95 Aligned_cols=77 Identities=27% Similarity=0.489 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+...++|||+|||+++|+++|+++|++||.|..|+|++ +||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999974 3999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.+..
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87643
No 305
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.63 E-value=3.6e-16 Score=121.52 Aligned_cols=83 Identities=17% Similarity=0.379 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLR----HFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i 191 (493)
.+.+++|||+|||+++++++|+ ++|++||.|..|.++. ++.++|||||+|.+.++|.+|++.||+..|.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567999999999999999999 9999999999999874 36788999999999999999999999999999999
Q ss_pred EEeccccccc
Q 011105 192 KCSAAQAKHR 201 (493)
Q Consensus 192 ~V~~~~~~~~ 201 (493)
.|.++.+...
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999876543
No 306
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.62 E-value=1.1e-15 Score=137.12 Aligned_cols=83 Identities=23% Similarity=0.344 Sum_probs=79.0
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+++|+++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|.+||..||+..+.|+.|+|.++..
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCc
Q 011105 373 QAD 375 (493)
Q Consensus 373 ~~~ 375 (493)
...
T Consensus 95 ~~~ 97 (213)
T 4f02_A 95 DPS 97 (213)
T ss_dssp CTH
T ss_pred ccc
Confidence 543
No 307
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=8.3e-16 Score=119.04 Aligned_cols=76 Identities=22% Similarity=0.419 Sum_probs=69.8
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEe
Q 011105 116 PPHGSEVYLGGIPH-DASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194 (493)
Q Consensus 116 ~~~~~~l~V~nLp~-~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~ 194 (493)
.+..++|||+|||+ ++|+++|+++|++||.|..|.|. +|||||+|.+.++|.+|++.||+..|.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45688999999998 99999999999999999999984 6799999999999999999999999999999999
Q ss_pred ccccc
Q 011105 195 AAQAK 199 (493)
Q Consensus 195 ~~~~~ 199 (493)
++.+.
T Consensus 79 ~a~~~ 83 (96)
T 2kvi_A 79 VSSSN 83 (96)
T ss_dssp EEECC
T ss_pred EcCcC
Confidence 98754
No 308
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=1.6e-15 Score=121.58 Aligned_cols=78 Identities=26% Similarity=0.238 Sum_probs=70.3
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccE-EEEEeCCHHHHHHHHHhcCCceecC--eEEEEE
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRY-GFVHFAERSSAMKALKNTEKYEIDG--QVLDCS 368 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-~fV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~ 368 (493)
....|||+||++.+|+++|+++|++||.|.+|+|+.. .|| |||+|.+.++|..|+..|||..|.| ++|+|.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 3466789999999999999999999999999999652 376 9999999999999999999999987 699999
Q ss_pred ecCCCCc
Q 011105 369 LAKPQAD 375 (493)
Q Consensus 369 ~a~~~~~ 375 (493)
+|+++..
T Consensus 98 ~Ak~~~l 104 (124)
T 2e5i_A 98 YARPTRL 104 (124)
T ss_dssp CCSCSCC
T ss_pred EecCCcc
Confidence 9998864
No 309
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=1.2e-15 Score=119.94 Aligned_cols=77 Identities=22% Similarity=0.435 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|++||.|..|.|++ +||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 34578999999999999999999999999999999863 5999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.+..
T Consensus 80 a~~~~ 84 (103)
T 2dgu_A 80 AKPPD 84 (103)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 87643
No 310
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=8.3e-16 Score=122.27 Aligned_cols=75 Identities=13% Similarity=0.128 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
..++|||+|||+++|+++|+++|++||.|..|.|+. +++||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999998864 56899999999999999999999999999999999986
Q ss_pred c
Q 011105 198 A 198 (493)
Q Consensus 198 ~ 198 (493)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 5
No 311
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.62 E-value=4e-16 Score=122.47 Aligned_cols=80 Identities=31% Similarity=0.586 Sum_probs=75.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
..++|||+|||+++|+++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|.+|+. ++..|.|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45899999999999999999999999999999999998 89999999999999999999998 8999999999998887
Q ss_pred ccc
Q 011105 198 AKH 200 (493)
Q Consensus 198 ~~~ 200 (493)
.+.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 543
No 312
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.62 E-value=1.5e-15 Score=115.57 Aligned_cols=75 Identities=23% Similarity=0.367 Sum_probs=69.8
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+.+++++|+++|++| .|..|+|. .++|||||+|.+.++|.+|+..||+..|.|++|+|.++..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 3799999999999999999999999 99999984 4589999999999999999999999999999999999976
Q ss_pred CC
Q 011105 373 QA 374 (493)
Q Consensus 373 ~~ 374 (493)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 313
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.61 E-value=2e-16 Score=132.44 Aligned_cols=84 Identities=23% Similarity=0.299 Sum_probs=71.6
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEE--EeCCC---CCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKV--VIPPA---KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v--~i~~~---~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 367 (493)
.++|||+|||+.+|+++|+++|+.||.|..+ .++.+ ..++.++|||||+|.+.++|.+||..||+..|.|++|.|
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V 124 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVV 124 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4899999999999999999999999998764 11111 235667999999999999999999999999999999999
Q ss_pred EecCCCCcc
Q 011105 368 SLAKPQADQ 376 (493)
Q Consensus 368 ~~a~~~~~~ 376 (493)
.+|.+...+
T Consensus 125 ~~a~~~~~~ 133 (143)
T 3egn_A 125 QFARSARPK 133 (143)
T ss_dssp EECCCSCC-
T ss_pred EECCCCCCc
Confidence 999876543
No 314
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.6e-15 Score=117.02 Aligned_cols=77 Identities=26% Similarity=0.403 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcc--CCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSI--GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC 193 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~--G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V 193 (493)
....++|||+|||+++|+++|+++|++| |.|..|++. ++||||+|.+.++|.+|+..||+..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3467899999999999999999999999 999999874 569999999999999999999999999999999
Q ss_pred ecccccc
Q 011105 194 SAAQAKH 200 (493)
Q Consensus 194 ~~~~~~~ 200 (493)
.++.++.
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9987654
No 315
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=2.3e-15 Score=117.70 Aligned_cols=82 Identities=21% Similarity=0.250 Sum_probs=72.6
Q ss_pred ccceEEEccCCC-----CCCHHHHHHHHhcCCcEEEEEeCCCCCC-CCcccEEEEEeCCHHHHHHHHHhcCCceecCeEE
Q 011105 292 QVKALYVKNLPK-----DITQDRLKELFAHHGKITKVVIPPAKPG-QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365 (493)
Q Consensus 292 ~~~~l~v~nl~~-----~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i 365 (493)
.+++|+|+||.. ..++++|+++|++||.|.+|.|++++.+ +.++|||||+|.+.++|.+|+..|||+.|.||+|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 348999999963 2368999999999999999999988653 5779999999999999999999999999999999
Q ss_pred EEEecCCC
Q 011105 366 DCSLAKPQ 373 (493)
Q Consensus 366 ~v~~a~~~ 373 (493)
.|.++.+.
T Consensus 87 ~v~~a~~~ 94 (105)
T 2pe8_A 87 KACFYNLD 94 (105)
T ss_dssp EEEECCHH
T ss_pred EEEEcCHH
Confidence 99999764
No 316
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=121.59 Aligned_cols=77 Identities=25% Similarity=0.462 Sum_probs=67.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCC---CCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEE
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDS---GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC 193 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V 193 (493)
...++|||+|||+++|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+||+.|+. +.|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 4578999999999999999999999999999 888888877 79999999999999999999998842 56666655
Q ss_pred ecc
Q 011105 194 SAA 196 (493)
Q Consensus 194 ~~~ 196 (493)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 317
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=116.36 Aligned_cols=77 Identities=29% Similarity=0.482 Sum_probs=67.2
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+.+|+++|+++|++||.|..|+|+.+ ++|||||+|.+.++|.+|+. ....+.+++|.|.++.+
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEP 77 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCC
Confidence 489999999999999999999999999999999876 48999999999999976543 24556899999999998
Q ss_pred CCcc
Q 011105 373 QADQ 376 (493)
Q Consensus 373 ~~~~ 376 (493)
+...
T Consensus 78 ~~~~ 81 (88)
T 1wf0_A 78 KHNS 81 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7554
No 318
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=4.6e-16 Score=120.66 Aligned_cols=78 Identities=19% Similarity=0.398 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
...++|||+|||+++|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 356899999999999999999999999988766 345889999999999999999999999999999999999998
Q ss_pred ccc
Q 011105 197 QAK 199 (493)
Q Consensus 197 ~~~ 199 (493)
.++
T Consensus 89 ~~~ 91 (96)
T 1fjc_A 89 GEK 91 (96)
T ss_dssp SSS
T ss_pred CCC
Confidence 654
No 319
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.61 E-value=6.5e-15 Score=129.24 Aligned_cols=122 Identities=14% Similarity=0.185 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHcCCCCcccCCCCCeeeecCCCCccc-----ccccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeC
Q 011105 252 NHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES-----SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIP 326 (493)
Q Consensus 252 ~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~ 326 (493)
+...+..|+.......+.+......+.......... ......++|||+|||+.+|+++|+++|++||.|..|+|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 345566666666445566666666666553211111 122345899999999999999999999999999999999
Q ss_pred CCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCCCc
Q 011105 327 PAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375 (493)
Q Consensus 327 ~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~ 375 (493)
++.. +.++|||||+|.+.++|.+|+..+ +..|+|++|.|.++.....
T Consensus 143 ~~~~-~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y~~ 189 (193)
T 2voo_A 143 RTLH-KAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDYFA 189 (193)
T ss_dssp ECTT-CCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC--
T ss_pred ECCC-CCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHHHH
Confidence 8875 667999999999999999999865 4699999999999877544
No 320
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=117.71 Aligned_cols=79 Identities=19% Similarity=0.271 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEE-EEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEV-RIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v-~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
...++|||+|||+++|+++|+++|+.||.|..| .|+.++.++ .|||+|.+.++|.+|+..||+..|.|++|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457899999999999999999999999999999 487776543 399999999999999999999999999999999
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8764
No 321
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.60 E-value=2e-15 Score=127.44 Aligned_cols=79 Identities=23% Similarity=0.457 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999876 579999999999999999999999999999999999
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+.++
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
No 322
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=115.92 Aligned_cols=78 Identities=19% Similarity=0.388 Sum_probs=69.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|+.||.|.+| +.++.+++ ||||+|.+.++|.+||+ |++..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456799999999999999999999999999987 55555555 99999999999999999 999999999999998
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+..+
T Consensus 79 a~~~ 82 (94)
T 2e5g_A 79 REQK 82 (94)
T ss_dssp SCCS
T ss_pred CCcC
Confidence 7644
No 323
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.60 E-value=2.9e-15 Score=129.20 Aligned_cols=83 Identities=27% Similarity=0.373 Sum_probs=78.9
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
.++|||+|||+.+|+++|+++|+.||.|..|++++++.++.++|||||+|.+.++|.+|+..|++..|.|++|.|.++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 38999999999999999999999999999999999998888999999999999999999999999999999999999987
Q ss_pred CCc
Q 011105 373 QAD 375 (493)
Q Consensus 373 ~~~ 375 (493)
...
T Consensus 83 ~~~ 85 (168)
T 1b7f_A 83 GGE 85 (168)
T ss_dssp CSS
T ss_pred Ccc
Confidence 643
No 324
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.60 E-value=3.8e-16 Score=130.77 Aligned_cols=84 Identities=19% Similarity=0.317 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEE-----eeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCce
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI-----MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKK 190 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i-----~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~ 190 (493)
...+++|||+|||+++|+++|+.+|+.||.|..|.+ +....+++++|||||+|.+.++|.+||..||+..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 456789999999999999999999999999876411 111235889999999999999999999999999999999
Q ss_pred EEEeccccc
Q 011105 191 IKCSAAQAK 199 (493)
Q Consensus 191 i~V~~~~~~ 199 (493)
|.|.++...
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998653
No 325
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-15 Score=117.63 Aligned_cols=78 Identities=27% Similarity=0.472 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCC-eeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCC-CcccCceEEE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGE-VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS-CELKGKKIKC 193 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~-v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~-~~i~g~~i~V 193 (493)
+...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||+ ..|.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6655552 468999999999999999999999 9999999999
Q ss_pred ecccccc
Q 011105 194 SAAQAKH 200 (493)
Q Consensus 194 ~~~~~~~ 200 (493)
.++.++.
T Consensus 78 ~~a~~~~ 84 (93)
T 2cqh_A 78 DYSVSKK 84 (93)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9987653
No 326
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.60 E-value=3.9e-15 Score=128.26 Aligned_cols=82 Identities=26% Similarity=0.480 Sum_probs=78.5
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
++|||+|||+.+|+++|+++|+.||.|..|.+++++.++.++|||||+|.+.++|.+|+..||+..+.|++|.|.++.+.
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 82 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 82 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCC
Confidence 79999999999999999999999999999999999988889999999999999999999999999999999999999876
Q ss_pred Cc
Q 011105 374 AD 375 (493)
Q Consensus 374 ~~ 375 (493)
..
T Consensus 83 ~~ 84 (167)
T 1fxl_A 83 SA 84 (167)
T ss_dssp CG
T ss_pred cc
Confidence 43
No 327
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=2.5e-15 Score=119.60 Aligned_cols=75 Identities=24% Similarity=0.411 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 117 PHGSEVYLGGIPHD-ASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 117 ~~~~~l~V~nLp~~-~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
...++|||+|||++ +|+++|+++|++||.|..|.| +++||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34689999999999 999999999999999999998 468999999999999999999999999999999999
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+...
T Consensus 97 a~~~ 100 (110)
T 1wf1_A 97 AGEP 100 (110)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8743
No 328
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.58 E-value=5e-15 Score=123.73 Aligned_cols=80 Identities=10% Similarity=0.092 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccC--ceEEEe
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG--KKIKCS 194 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g--~~i~V~ 194 (493)
..-.+|||+||++.+|+++|+++|++||.|.+|+|+.+ .+++||||+|.+.++|.+|++.||+..|.+ ++|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 33457899999999999999999999999999999754 267899999999999999999999999966 999999
Q ss_pred cccccc
Q 011105 195 AAQAKH 200 (493)
Q Consensus 195 ~~~~~~ 200 (493)
+++++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998653
No 329
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.58 E-value=2.7e-15 Score=120.17 Aligned_cols=74 Identities=22% Similarity=0.403 Sum_probs=65.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCce-----E
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKK-----I 191 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~-----i 191 (493)
...++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||+..|.|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999999999999999999999765 89999999999999999999999999998 5
Q ss_pred EEeccc
Q 011105 192 KCSAAQ 197 (493)
Q Consensus 192 ~V~~~~ 197 (493)
+|..+.
T Consensus 87 ~v~~~~ 92 (115)
T 3beg_B 87 RVKVDG 92 (115)
T ss_dssp EEEECC
T ss_pred EeccCC
Confidence 555443
No 330
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.7e-15 Score=117.82 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=68.5
Q ss_pred cCCCCCCeEEE--cCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcc-----
Q 011105 114 ALPPHGSEVYL--GGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL----- 186 (493)
Q Consensus 114 ~~~~~~~~l~V--~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i----- 186 (493)
.....+++||| +||++++|+++|+++|++||.|.+|.|+. .+|||||+|.+.++|.+|++.||+..|
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34456789999 77999999999999999999999998764 368999999999999999999999988
Q ss_pred cCceEEEeccc
Q 011105 187 KGKKIKCSAAQ 197 (493)
Q Consensus 187 ~g~~i~V~~~~ 197 (493)
.+++|.|.++.
T Consensus 94 ~g~~l~v~~a~ 104 (114)
T 2cq2_A 94 QKITLYLNFVE 104 (114)
T ss_dssp CEEECEEEEES
T ss_pred CCcEEEEEecc
Confidence 67888887765
No 331
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.58 E-value=6.4e-15 Score=130.80 Aligned_cols=77 Identities=22% Similarity=0.297 Sum_probs=72.3
Q ss_pred cceEEEccCC-CCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 293 VKALYVKNLP-KDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 293 ~~~l~v~nl~-~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
.++|||+||| +.+|+++|+++|+.||.|.+|+|++++ +|||||+|.+.++|.+||..|||..|.|++|+|.+++
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 3799999999 899999999999999999999999864 7999999999999999999999999999999999997
Q ss_pred CCC
Q 011105 372 PQA 374 (493)
Q Consensus 372 ~~~ 374 (493)
.+.
T Consensus 79 ~~~ 81 (205)
T 3tyt_A 79 QPA 81 (205)
T ss_dssp CSC
T ss_pred CCc
Confidence 654
No 332
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.58 E-value=5.2e-15 Score=118.97 Aligned_cols=79 Identities=10% Similarity=0.132 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceE-EEEEeccHHHHHHHHHHhCCCcccC--ceEEE
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGY-AFVTFRTKELASQAIEELNSCELKG--KKIKC 193 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~F~~~e~A~~Al~~l~~~~i~g--~~i~V 193 (493)
..-.+|||+||++.+|+++|+++|++||.|.+|+|+.+ ++|| |||+|.+.++|.+|++.|||..|.+ +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 33456889999999999999999999999999998864 3577 9999999999999999999999988 89999
Q ss_pred ecccccc
Q 011105 194 SAAQAKH 200 (493)
Q Consensus 194 ~~~~~~~ 200 (493)
.+++...
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998764
No 333
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.58 E-value=6.9e-15 Score=111.70 Aligned_cols=70 Identities=24% Similarity=0.462 Sum_probs=66.1
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcC----C-------cEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceec
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHH----G-------KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 361 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~ 361 (493)
.++|||+|||+.+++++|+++|++| | .|.++.+.++ +|||||+|.+.++|.+|+ .||+..|.
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4899999999999999999999999 8 9999999865 699999999999999999 99999999
Q ss_pred CeEEEEEe
Q 011105 362 GQVLDCSL 369 (493)
Q Consensus 362 g~~i~v~~ 369 (493)
|++|+|..
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 334
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.58 E-value=3.9e-15 Score=147.15 Aligned_cols=83 Identities=16% Similarity=0.408 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
...++|||+|||+.+|+++|+.+|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 011105 197 QAK 199 (493)
Q Consensus 197 ~~~ 199 (493)
...
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 754
No 335
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.58 E-value=7.6e-15 Score=126.26 Aligned_cols=82 Identities=21% Similarity=0.454 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
....++|||+|||+++|+++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 011105 196 AQ 197 (493)
Q Consensus 196 ~~ 197 (493)
+.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 75
No 336
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=116.48 Aligned_cols=78 Identities=26% Similarity=0.426 Sum_probs=69.3
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCC---CCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG---QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 369 (493)
.++|||+|||+.+|+++|+++|++||.|. +.++.+..+ +.++|||||+|.+.++|.+||..|+ .++|+.|.+..
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~ 84 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCVS 84 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEEC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEecc
Confidence 48999999999999999999999999999 899988877 6889999999999999999999984 47888887776
Q ss_pred cCCC
Q 011105 370 AKPQ 373 (493)
Q Consensus 370 a~~~ 373 (493)
+.+.
T Consensus 85 ~~~~ 88 (114)
T 2dnl_A 85 SPTI 88 (114)
T ss_dssp CSSS
T ss_pred CCCc
Confidence 5543
No 337
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9.6e-15 Score=113.28 Aligned_cols=77 Identities=27% Similarity=0.464 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+...++|||+|| ++|+++|+++|++||.|..|.|. .++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 446789999996 99999999999999999999984 4678999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.++.
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87654
No 338
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.57 E-value=1.4e-14 Score=113.35 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHHhhccCCeeEEEEeeCCCC-CCcceEEEEEeccHHHHHHHHHHhCCCcccCc
Q 011105 116 PPHGSEVYLGGIPH-----DASDDDLRHFCKSIGEVTEVRIMKGKDS-GEAKGYAFVTFRTKELASQAIEELNSCELKGK 189 (493)
Q Consensus 116 ~~~~~~l~V~nLp~-----~~te~~l~~~f~~~G~v~~v~i~~~~~~-g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~ 189 (493)
+..+++|+|+||.. +-++++|+++|++||.|.+|+|+.++.+ ++++|||||+|.+.++|.+|++.||+..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35688999999963 2378999999999999999999998754 68999999999999999999999999999999
Q ss_pred eEEEecccc
Q 011105 190 KIKCSAAQA 198 (493)
Q Consensus 190 ~i~V~~~~~ 198 (493)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 339
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.56 E-value=1.1e-14 Score=131.14 Aligned_cols=84 Identities=20% Similarity=0.495 Sum_probs=79.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
...++|||+|||+++|+++|+++|+.||.|..|+|+.++.+++++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 46789999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred cccc
Q 011105 197 QAKH 200 (493)
Q Consensus 197 ~~~~ 200 (493)
.+..
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 7653
No 340
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.56 E-value=5.6e-15 Score=119.16 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=69.9
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
..++|||+|| .+|+++|+++|+.||.|..|.|. .++|||||+|.+.++|.+||..||+..|.|++|.|.|+.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 3589999996 69999999999999999999996 347999999999999999999999999999999999999
Q ss_pred CCCccC
Q 011105 372 PQADQK 377 (493)
Q Consensus 372 ~~~~~~ 377 (493)
++....
T Consensus 110 ~~~~~~ 115 (121)
T 2bz2_A 110 KQPMLD 115 (121)
T ss_dssp SSCC--
T ss_pred CCCCCC
Confidence 875443
No 341
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.56 E-value=8.6e-15 Score=126.78 Aligned_cols=80 Identities=30% Similarity=0.590 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
...++|||+|||+++|+++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34789999999999999999999999999999999999888999999999999999999999999999999999999876
No 342
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.56 E-value=7.3e-15 Score=111.64 Aligned_cols=75 Identities=35% Similarity=0.569 Sum_probs=62.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCc--ccCceEEE
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE--LKGKKIKC 193 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~--i~g~~i~V 193 (493)
+...++|||+|||+++|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|.+ +++.. +.|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 456789999999999999999999999999999999874 78999999999999984 44544 46999999
Q ss_pred eccccc
Q 011105 194 SAAQAK 199 (493)
Q Consensus 194 ~~~~~~ 199 (493)
.++.++
T Consensus 79 ~~a~~k 84 (89)
T 3d2w_A 79 SNAEPK 84 (89)
T ss_dssp EECC--
T ss_pred EEcCCC
Confidence 988754
No 343
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.56 E-value=1e-14 Score=129.21 Aligned_cols=84 Identities=23% Similarity=0.430 Sum_probs=76.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEec
Q 011105 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370 (493)
Q Consensus 291 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 370 (493)
...++|||+|||+.+|+++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|.+||.. ++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 3458999999999999999999999999999999999999999999999999999999999986 999999999999999
Q ss_pred CCCCc
Q 011105 371 KPQAD 375 (493)
Q Consensus 371 ~~~~~ 375 (493)
.+...
T Consensus 90 ~~~~~ 94 (196)
T 1l3k_A 90 VSRED 94 (196)
T ss_dssp CC---
T ss_pred cCccc
Confidence 87644
No 344
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.55 E-value=7.4e-15 Score=111.52 Aligned_cols=72 Identities=25% Similarity=0.540 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCc
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSI----G-------EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE 185 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~----G-------~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~ 185 (493)
...++|||+|||+++|+++|+++|++| | .|.++++..+ +|||||+|.+.++|.+|+ .||+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 346899999999999999999999999 8 9999998754 689999999999999999 899999
Q ss_pred ccCceEEEec
Q 011105 186 LKGKKIKCSA 195 (493)
Q Consensus 186 i~g~~i~V~~ 195 (493)
|.|+.|+|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999964
No 345
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=1.9e-14 Score=115.31 Aligned_cols=75 Identities=23% Similarity=0.296 Sum_probs=67.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceE-EEEEeccHHHHHHHHHHhCCCcccC--ceEEEecc
Q 011105 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGY-AFVTFRTKELASQAIEELNSCELKG--KKIKCSAA 196 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~F~~~e~A~~Al~~l~~~~i~g--~~i~V~~~ 196 (493)
..|||+||++.+|+++|+++|++||.|.+|+|+.. .|| |||+|.+.++|..|++.||+..|.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34689999999999999999999999999999752 276 9999999999999999999999987 69999999
Q ss_pred cccc
Q 011105 197 QAKH 200 (493)
Q Consensus 197 ~~~~ 200 (493)
++..
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8764
No 346
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.55 E-value=1.5e-13 Score=129.07 Aligned_cols=81 Identities=27% Similarity=0.480 Sum_probs=74.2
Q ss_pred ccceEEEccCCCCCCHHHHH----HHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEE
Q 011105 292 QVKALYVKNLPKDITQDRLK----ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v 367 (493)
..++|||+|||+.+|+++|+ ++|+.||.|..|+|++ ++.++|||||+|.+.++|.+||..||+..|.|+.|+|
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 35899999999999999977 8999999999999987 4567899999999999999999999999999999999
Q ss_pred EecCCCCc
Q 011105 368 SLAKPQAD 375 (493)
Q Consensus 368 ~~a~~~~~ 375 (493)
.|+.....
T Consensus 85 ~~a~~~~~ 92 (282)
T 3pgw_A 85 QYAKTDSD 92 (282)
T ss_pred EEeccCcc
Confidence 99977653
No 347
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.54 E-value=6.8e-15 Score=126.77 Aligned_cols=80 Identities=23% Similarity=0.556 Sum_probs=76.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecccc
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~ 198 (493)
.++|||+|||+++|+++|+++|+.||.|..|+++.++.++.++|||||+|.+.++|.+|++ +++..|.|+.|.|.++.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 5689999999999999999999999999999999999899999999999999999999998 899999999999999876
Q ss_pred c
Q 011105 199 K 199 (493)
Q Consensus 199 ~ 199 (493)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 348
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.54 E-value=1.6e-14 Score=128.16 Aligned_cols=84 Identities=29% Similarity=0.561 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+...++|||+|||+.+|+++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35679999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cccc
Q 011105 196 AQAK 199 (493)
Q Consensus 196 ~~~~ 199 (493)
+.+.
T Consensus 191 a~~~ 194 (198)
T 2yh0_A 191 ASVG 194 (198)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8764
No 349
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.54 E-value=1.4e-14 Score=129.71 Aligned_cols=80 Identities=23% Similarity=0.371 Sum_probs=71.1
Q ss_pred ccccceEEEccCCCCC---------CHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCcee
Q 011105 290 ASQVKALYVKNLPKDI---------TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 360 (493)
Q Consensus 290 ~~~~~~l~v~nl~~~~---------t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~ 360 (493)
....++|||+||+..+ ++++|+++|++||.|..|+|+.+ +|||||+|.+.++|..|+..|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4456899999999998 79999999999999999999863 79999999999999999999999999
Q ss_pred ------------cCeEEEEEecCCCCc
Q 011105 361 ------------DGQVLDCSLAKPQAD 375 (493)
Q Consensus 361 ------------~g~~i~v~~a~~~~~ 375 (493)
.|+.|.|.||.....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987643
No 350
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.54 E-value=2.4e-14 Score=112.06 Aligned_cols=81 Identities=17% Similarity=0.320 Sum_probs=71.2
Q ss_pred cceEEEccC--CCCCC--------HHHHHHHHhcCCcEEEEEeCCCCCC--CCcccEEEEEeCCHHHHHHHHHhcCCcee
Q 011105 293 VKALYVKNL--PKDIT--------QDRLKELFAHHGKITKVVIPPAKPG--QERSRYGFVHFAERSSAMKALKNTEKYEI 360 (493)
Q Consensus 293 ~~~l~v~nl--~~~~t--------~~~l~~~f~~~G~v~~v~i~~~~~~--~~~~g~~fV~f~~~~~a~~a~~~l~~~~~ 360 (493)
+++|.|.|+ +..+. .++|++.|++||.|.+|.|+++..+ ..++|+|||+|.+.++|.+|+..|||+.|
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 489999998 33443 3789999999999999999998865 35689999999999999999999999999
Q ss_pred cCeEEEEEecCCC
Q 011105 361 DGQVLDCSLAKPQ 373 (493)
Q Consensus 361 ~g~~i~v~~a~~~ 373 (493)
.||+|+|.++...
T Consensus 85 ~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 85 ANRVVVTKYCDPD 97 (105)
T ss_dssp TTEECEEEEECHH
T ss_pred CCCEEEEEEeCHH
Confidence 9999999998654
No 351
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=5.4e-14 Score=112.03 Aligned_cols=82 Identities=13% Similarity=0.217 Sum_probs=69.8
Q ss_pred cccceEEEccCCCCCC-----------HHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCce
Q 011105 291 SQVKALYVKNLPKDIT-----------QDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359 (493)
Q Consensus 291 ~~~~~l~v~nl~~~~t-----------~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~ 359 (493)
..+++|+|+||..... +++|+++|++||.|..|.|. ++. ++|||||+|.+.++|.+|+..||+..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~~---~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DRH---PDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TTC---TTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cCC---CCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 3458999999944332 58999999999999999773 332 58999999999999999999999999
Q ss_pred ecCeEEEEEecCCCCcc
Q 011105 360 IDGQVLDCSLAKPQADQ 376 (493)
Q Consensus 360 ~~g~~i~v~~a~~~~~~ 376 (493)
|.||+|+|.++.++...
T Consensus 89 ~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 89 FGGRQITAQAWDGTTDY 105 (112)
T ss_dssp ETTEECEEEECCSCCCS
T ss_pred ECCcEEEEEEeCCCCCc
Confidence 99999999999887543
No 352
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=7.8e-15 Score=111.55 Aligned_cols=77 Identities=32% Similarity=0.526 Sum_probs=66.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
...++|||+|||+++|+++|+++|++||.|..|+|+.+ ++|||||+|.+.++|++|+. ....+.++.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 45789999999999999999999999999999999864 78999999999999986543 234468999999988
Q ss_pred cccc
Q 011105 197 QAKH 200 (493)
Q Consensus 197 ~~~~ 200 (493)
.++.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.51 E-value=4e-14 Score=114.14 Aligned_cols=77 Identities=27% Similarity=0.464 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEec
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~ 195 (493)
+...++|||+|| ++|+++|+++|++||.|.+|.|. .++|||||+|.+.++|.+||+.|++..|.|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456889999996 79999999999999999999985 4678999999999999999999999999999999999
Q ss_pred ccccc
Q 011105 196 AQAKH 200 (493)
Q Consensus 196 ~~~~~ 200 (493)
+.+..
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 87653
No 354
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.49 E-value=9.2e-14 Score=120.57 Aligned_cols=78 Identities=29% Similarity=0.596 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCccc---CceEEEe
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK---GKKIKCS 194 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~---g~~i~V~ 194 (493)
..++|||+|||+++|+++|+++|+.||.|.+|+++.+.. +.++|||||+|.+.++|.+|++.||+..+. +++|.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 567999999999999999999999999999999999865 899999999999999999999999998776 4999998
Q ss_pred cc
Q 011105 195 AA 196 (493)
Q Consensus 195 ~~ 196 (493)
++
T Consensus 173 ~a 174 (175)
T 3nmr_A 173 FA 174 (175)
T ss_dssp EC
T ss_pred ec
Confidence 76
No 355
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.49 E-value=8.4e-14 Score=122.13 Aligned_cols=78 Identities=24% Similarity=0.393 Sum_probs=71.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecccc
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~~ 198 (493)
.++|||+|||+++|+++|+++|++||.|..|+|+++.. +.++|||||+|.+.++|.+|++.+ +..|.|+.|.|.+...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 47999999999999999999999999999999999865 899999999999999999999854 5689999999987653
No 356
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.47 E-value=3.5e-14 Score=110.93 Aligned_cols=72 Identities=15% Similarity=0.254 Sum_probs=64.1
Q ss_pred EccCCCCCCHHHHHHHH------------hcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEE
Q 011105 298 VKNLPKDITQDRLKELF------------AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365 (493)
Q Consensus 298 v~nl~~~~t~~~l~~~f------------~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i 365 (493)
+.||++.+++++|+++| ++||.|.+|.|+++.. +.++|||||+|.+.++|.+|+..|||+.|.||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777888887777666 9999999999998875 5679999999999999999999999999999999
Q ss_pred EEEec
Q 011105 366 DCSLA 370 (493)
Q Consensus 366 ~v~~a 370 (493)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 357
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.8e-13 Score=108.99 Aligned_cols=85 Identities=24% Similarity=0.358 Sum_probs=72.4
Q ss_pred cCCCCCCeEEEcCCCCCCC-----------HHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhC
Q 011105 114 ALPPHGSEVYLGGIPHDAS-----------DDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN 182 (493)
Q Consensus 114 ~~~~~~~~l~V~nLp~~~t-----------e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~ 182 (493)
..+..+++|+|+||....+ +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|+..||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3566789999999954432 5899999999999999965 553 389999999999999999999999
Q ss_pred CCcccCceEEEecccccccc
Q 011105 183 SCELKGKKIKCSAAQAKHRL 202 (493)
Q Consensus 183 ~~~i~g~~i~V~~~~~~~~l 202 (493)
+..|.|+.|.|.++.+....
T Consensus 86 g~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp TCEETTEECEEEECCSCCCS
T ss_pred CCEECCcEEEEEEeCCCCCc
Confidence 99999999999998765543
No 358
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.47 E-value=1.3e-13 Score=125.10 Aligned_cols=80 Identities=25% Similarity=0.309 Sum_probs=74.6
Q ss_pred cccceEEEccCCC-CCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q 011105 291 SQVKALYVKNLPK-DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (493)
Q Consensus 291 ~~~~~l~v~nl~~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 369 (493)
...++|||+|||+ .+++++|+++|+.||.|..|+|++++ +|||||+|.+.++|.+|+..||+..|.|++|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3458999999999 99999999999999999999999886 68999999999999999999999999999999999
Q ss_pred cCCCCc
Q 011105 370 AKPQAD 375 (493)
Q Consensus 370 a~~~~~ 375 (493)
+.+...
T Consensus 107 a~~~~~ 112 (229)
T 2adc_A 107 SKHQNV 112 (229)
T ss_dssp CSCCCC
T ss_pred ecCccc
Confidence 987643
No 359
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.47 E-value=8.8e-14 Score=110.84 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=70.5
Q ss_pred cceEEEccCCC--CC---CHHHHHHHHhcCCcEEEEEeCCCCC----CCCcccEEEEEeCCHHHHHHHHHhcCCceecCe
Q 011105 293 VKALYVKNLPK--DI---TQDRLKELFAHHGKITKVVIPPAKP----GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 363 (493)
Q Consensus 293 ~~~l~v~nl~~--~~---t~~~l~~~f~~~G~v~~v~i~~~~~----~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~ 363 (493)
+++|+|.|+-. .+ .+++|++.|++||.|.+|.|+++.. ++.++|++||+|.+.++|.+|+..|||+.|.||
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 48999999932 22 3689999999999999999998865 356689999999999999999999999999999
Q ss_pred EEEEEecCC
Q 011105 364 VLDCSLAKP 372 (493)
Q Consensus 364 ~i~v~~a~~ 372 (493)
+|.|.++..
T Consensus 100 ~i~v~~~~~ 108 (118)
T 3ue2_A 100 KVVAEVYDQ 108 (118)
T ss_dssp ECEEEEECH
T ss_pred EEEEEEcCh
Confidence 999999865
No 360
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.45 E-value=1.5e-13 Score=123.04 Aligned_cols=79 Identities=22% Similarity=0.405 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcc
Q 011105 116 PPHGSEVYLGGIPHDA---------SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~---------te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i 186 (493)
....++|||+||+..+ ++++|+.+|++||.|.+|+|+. ++|||||+|.+.++|..|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4568999999999998 7999999999999999999985 478999999999999999999999999
Q ss_pred ------------cCceEEEecccccc
Q 011105 187 ------------KGKKIKCSAAQAKH 200 (493)
Q Consensus 187 ------------~g~~i~V~~~~~~~ 200 (493)
.|+.|.|.++....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999997653
No 361
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.45 E-value=2.1e-13 Score=126.32 Aligned_cols=78 Identities=28% Similarity=0.418 Sum_probs=72.2
Q ss_pred ccccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEe
Q 011105 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369 (493)
Q Consensus 290 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 369 (493)
....++|||+|||+.+|+++|+++|+.||.|..|.|.++ +|||||+|.+.++|.+|+..||+..|.|++|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 344589999999999999999999999999999999764 69999999999999999999999999999999999
Q ss_pred cCCC
Q 011105 370 AKPQ 373 (493)
Q Consensus 370 a~~~ 373 (493)
+.+.
T Consensus 93 a~~~ 96 (261)
T 3sde_A 93 ATHG 96 (261)
T ss_dssp CCCS
T ss_pred cccC
Confidence 9764
No 362
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.44 E-value=1.3e-13 Score=119.63 Aligned_cols=77 Identities=19% Similarity=0.407 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEeccc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~~ 197 (493)
..++|||+|||+++|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 46799999999999999999999999988766 4568999999999999999999999999999999999999987
Q ss_pred cc
Q 011105 198 AK 199 (493)
Q Consensus 198 ~~ 199 (493)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 363
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.43 E-value=1.5e-13 Score=121.86 Aligned_cols=77 Identities=26% Similarity=0.330 Sum_probs=73.1
Q ss_pred ceEEEccCCC-CCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCC
Q 011105 294 KALYVKNLPK-DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372 (493)
Q Consensus 294 ~~l~v~nl~~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 372 (493)
++|||+|||+ .+++++|+++|+.||.|..|+|++++ +|||||+|.+.++|.+|+..||+..|.|++|.|.++.+
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 7999999999 99999999999999999999999886 68999999999999999999999999999999999987
Q ss_pred CCc
Q 011105 373 QAD 375 (493)
Q Consensus 373 ~~~ 375 (493)
...
T Consensus 79 ~~~ 81 (198)
T 1qm9_A 79 QNV 81 (198)
T ss_dssp CSC
T ss_pred CCc
Confidence 643
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.43 E-value=2.9e-13 Score=105.82 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=71.1
Q ss_pred CCCeEEEcCC--CCCCC--------HHHHHHHhhccCCeeEEEEeeCCCC--CCcceEEEEEeccHHHHHHHHHHhCCCc
Q 011105 118 HGSEVYLGGI--PHDAS--------DDDLRHFCKSIGEVTEVRIMKGKDS--GEAKGYAFVTFRTKELASQAIEELNSCE 185 (493)
Q Consensus 118 ~~~~l~V~nL--p~~~t--------e~~l~~~f~~~G~v~~v~i~~~~~~--g~~~g~afV~F~~~e~A~~Al~~l~~~~ 185 (493)
+++.|.|.|+ |..+. +++|++.|++||.|.+|+|+++..+ ++++|+|||+|.+.++|.+|++.||+..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5789999998 44443 3689999999999999999988764 3689999999999999999999999999
Q ss_pred ccCceEEEecccc
Q 011105 186 LKGKKIKCSAAQA 198 (493)
Q Consensus 186 i~g~~i~V~~~~~ 198 (493)
+.||.|.|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998754
No 365
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.2e-12 Score=100.71 Aligned_cols=67 Identities=21% Similarity=0.279 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCCCcc
Q 011105 303 KDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 376 (493)
Q Consensus 303 ~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~ 376 (493)
..+++++|+++|++||.|..|.|+. .++|||||+|.+.++|..||..+++ +.+++|+|.|+.++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 4689999999999999999999983 4589999999999999999997554 68999999999887543
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.39 E-value=7.6e-13 Score=105.40 Aligned_cols=82 Identities=22% Similarity=0.321 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCC--C---CCHHHHHHHhhccCCeeEEEEeeCCC----CCCcceEEEEEeccHHHHHHHHHHhCCCccc
Q 011105 117 PHGSEVYLGGIPH--D---ASDDDLRHFCKSIGEVTEVRIMKGKD----SGEAKGYAFVTFRTKELASQAIEELNSCELK 187 (493)
Q Consensus 117 ~~~~~l~V~nLp~--~---~te~~l~~~f~~~G~v~~v~i~~~~~----~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~ 187 (493)
+++++|+|+|+-. + -.+++|++.|++||.|.+|+|++++. +++++|++||+|.+.++|.+|++.||+..+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3689999999942 2 24688999999999999999998864 4578899999999999999999999999999
Q ss_pred CceEEEecccc
Q 011105 188 GKKIKCSAAQA 198 (493)
Q Consensus 188 g~~i~V~~~~~ 198 (493)
||.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999998754
No 367
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=1e-12 Score=103.89 Aligned_cols=79 Identities=13% Similarity=0.203 Sum_probs=67.9
Q ss_pred ccceEEEccCCCCCC----------HHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceec
Q 011105 292 QVKALYVKNLPKDIT----------QDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 361 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t----------~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~ 361 (493)
.+++|.|.|+-.... +++|++.|++||.|.+|.|.++. .+||+||+|.+.++|.+|+..|||+.|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 348899999832211 36889999999999999998764 3899999999999999999999999999
Q ss_pred CeEEEEEecCCCC
Q 011105 362 GQVLDCSLAKPQA 374 (493)
Q Consensus 362 g~~i~v~~a~~~~ 374 (493)
||.|.|.|+....
T Consensus 82 GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 82 GKMITAAYVPLPT 94 (114)
T ss_dssp TEECEEEEECHHH
T ss_pred CEEEEEEEEcHHH
Confidence 9999999997654
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.36 E-value=2.7e-13 Score=105.89 Aligned_cols=72 Identities=25% Similarity=0.416 Sum_probs=61.4
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceE
Q 011105 124 LGGIPHDASDDDLRHFC------------KSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (493)
Q Consensus 124 V~nLp~~~te~~l~~~f------------~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i 191 (493)
+.+||+.+++++|+++| ++||.|.+|+|+++.. ++++|||||+|.+.++|.+|+..||+..+.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 34555566666666555 9999999999998765 7899999999999999999999999999999999
Q ss_pred EEecc
Q 011105 192 KCSAA 196 (493)
Q Consensus 192 ~V~~~ 196 (493)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.31 E-value=5.6e-12 Score=119.08 Aligned_cols=74 Identities=20% Similarity=0.430 Sum_probs=65.7
Q ss_pred ccceEEEcc--CCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceec---Ce--E
Q 011105 292 QVKALYVKN--LPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID---GQ--V 364 (493)
Q Consensus 292 ~~~~l~v~n--l~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~---g~--~ 364 (493)
.+++|||+| |++.+|+++|+++|++||.|..|.+.. +||||||+|.+.++|.+|++.|||..+- |+ +
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 348999999 588999999999999999999998875 3799999999999999999999999883 45 6
Q ss_pred EEEEecC
Q 011105 365 LDCSLAK 371 (493)
Q Consensus 365 i~v~~a~ 371 (493)
|.|.|+.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 8888885
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.7e-11 Score=93.24 Aligned_cols=74 Identities=23% Similarity=0.197 Sum_probs=62.5
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceE
Q 011105 119 GSEVYLGGIP-------HDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (493)
Q Consensus 119 ~~~l~V~nLp-------~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i 191 (493)
..+|.|.-.. ..+|+++|+++|++||.|..|.|+ ++++|||||+|.+.++|.+||+.++ .+.++.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 4566666554 468999999999999999999998 3688999999999999999998644 4689999
Q ss_pred EEeccccc
Q 011105 192 KCSAAQAK 199 (493)
Q Consensus 192 ~V~~~~~~ 199 (493)
+|.++...
T Consensus 83 ~V~~a~~~ 90 (100)
T 2d9o_A 83 KISWLEGQ 90 (100)
T ss_dssp EEECSSCC
T ss_pred EEEEccCC
Confidence 99988754
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.21 E-value=4.2e-11 Score=94.55 Aligned_cols=78 Identities=22% Similarity=0.278 Sum_probs=66.5
Q ss_pred CCCCCeEEEcCCCCCC----------CHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCc
Q 011105 116 PPHGSEVYLGGIPHDA----------SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE 185 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~----------te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~ 185 (493)
+..+++|.|.|+=... .+++|++.|++||.|.+|.|.++. .+|+|||+|.+.++|.+|++.|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4567889999984322 235689999999999999986652 58999999999999999999999999
Q ss_pred ccCceEEEeccc
Q 011105 186 LKGKKIKCSAAQ 197 (493)
Q Consensus 186 i~g~~i~V~~~~ 197 (493)
+.||.|.|.++.
T Consensus 80 f~GR~i~v~~~~ 91 (114)
T 3s6e_A 80 FAGKMITAAYVP 91 (114)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCEEEEEEEEc
Confidence 999999999875
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.20 E-value=2.1e-11 Score=115.12 Aligned_cols=77 Identities=19% Similarity=0.274 Sum_probs=65.6
Q ss_pred cCCCCCCeEEEcC--CCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCccc---C
Q 011105 114 ALPPHGSEVYLGG--IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK---G 188 (493)
Q Consensus 114 ~~~~~~~~l~V~n--Lp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~---g 188 (493)
.....+.+|||+| |++.+|+++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.||+..+. |
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3356788999999 589999999999999999999987753 5799999999999999999999999873 4
Q ss_pred c--eEEEecc
Q 011105 189 K--KIKCSAA 196 (493)
Q Consensus 189 ~--~i~V~~~ 196 (493)
+ .|.|.++
T Consensus 87 ~~~~ly~~~~ 96 (345)
T 3tht_A 87 QKITLYLNFV 96 (345)
T ss_dssp CEEECEEEEC
T ss_pred CceEEEEEEe
Confidence 5 4666655
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=1.2e-10 Score=85.61 Aligned_cols=71 Identities=24% Similarity=0.333 Sum_probs=61.3
Q ss_pred ceEEEccCCC----CCCH----HHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEE
Q 011105 294 KALYVKNLPK----DITQ----DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365 (493)
Q Consensus 294 ~~l~v~nl~~----~~t~----~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i 365 (493)
.+|+|.-++. .+-+ .+|.+.|.+||.|..++|+.++ +||+|.+.++|.+||. |||..+.||.|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 5777777662 2333 6689999999999999999864 8999999999999998 99999999999
Q ss_pred EEEecCCC
Q 011105 366 DCSLAKPQ 373 (493)
Q Consensus 366 ~v~~a~~~ 373 (493)
+|.++++.
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99999875
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=2e-10 Score=90.50 Aligned_cols=76 Identities=17% Similarity=0.312 Sum_probs=67.8
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEecc-HHHHHHHHHHhC--CCcccCceE
Q 011105 116 PPHGSEVYLGGIPHD-ASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRT-KELASQAIEELN--SCELKGKKI 191 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~-~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~-~e~A~~Al~~l~--~~~i~g~~i 191 (493)
-+.++.|+|+||++. ++.++|+++|++||.|..|.++.+.. .|||.|.+ ..+|..|+..++ +..|.+..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 457899999999999 99999999999999999999998765 69999999 899999999884 778899888
Q ss_pred EEeccc
Q 011105 192 KCSAAQ 197 (493)
Q Consensus 192 ~V~~~~ 197 (493)
.+....
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 886554
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=3.2e-10 Score=89.40 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=67.4
Q ss_pred cceEEEccCCCC-CCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCC-HHHHHHHHHhcC--CceecCeEEEEE
Q 011105 293 VKALYVKNLPKD-ITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE-RSSAMKALKNTE--KYEIDGQVLDCS 368 (493)
Q Consensus 293 ~~~l~v~nl~~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~-~~~a~~a~~~l~--~~~~~g~~i~v~ 368 (493)
...|+|+||++. ++.++|+++|+.||.|.+|.+.++.. .|||+|.+ ..+|..|+..|| +..|.+..+++.
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 489999999999 99999999999999999999998863 69999999 899999999995 788999989988
Q ss_pred ecCC
Q 011105 369 LAKP 372 (493)
Q Consensus 369 ~a~~ 372 (493)
+..-
T Consensus 92 vL~G 95 (121)
T 1owx_A 92 VLEG 95 (121)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 7764
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=4e-10 Score=82.79 Aligned_cols=73 Identities=27% Similarity=0.343 Sum_probs=62.8
Q ss_pred CCCCeEEEcCCCC----CCCH----HHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccC
Q 011105 117 PHGSEVYLGGIPH----DASD----DDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG 188 (493)
Q Consensus 117 ~~~~~l~V~nLp~----~~te----~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g 188 (493)
+...||+|.-++. +.-. .+|.+.|.+||.|..++|+.++ +||+|.+.++|.+||+ ||+..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4567888888772 3333 5688999999999999999874 8999999999999998 99999999
Q ss_pred ceEEEecccc
Q 011105 189 KKIKCSAAQA 198 (493)
Q Consensus 189 ~~i~V~~~~~ 198 (493)
|.|+|..+++
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999998764
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=6.8e-10 Score=81.89 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=60.7
Q ss_pred ceEEEccCCCC-----CCH----HHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeE
Q 011105 294 KALYVKNLPKD-----ITQ----DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV 364 (493)
Q Consensus 294 ~~l~v~nl~~~-----~t~----~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~ 364 (493)
.+|+|.-++.. +.+ .+|.+.|.+||.|..++|+.++ +||+|.+.++|.+||. |||..+.||.
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 68899888632 222 5689999999999999999874 9999999999999999 9999999999
Q ss_pred EEEEecCC
Q 011105 365 LDCSLAKP 372 (493)
Q Consensus 365 i~v~~a~~ 372 (493)
|+|.+..+
T Consensus 87 L~V~~k~~ 94 (95)
T 1ufw_A 87 VKISGPSS 94 (95)
T ss_dssp EEEECCCC
T ss_pred EEEeccCC
Confidence 99998754
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.88 E-value=1.3e-08 Score=91.57 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=61.4
Q ss_pred CCHHHHHHHHhcCCcEEEEEeCCCC----CCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecCCC
Q 011105 305 ITQDRLKELFAHHGKITKVVIPPAK----PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373 (493)
Q Consensus 305 ~t~~~l~~~f~~~G~v~~v~i~~~~----~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 373 (493)
-.+++|++.|++||.|.+|.|+++. .++.++|++||+|.+.++|.+|+..|||+.|.||+|.|.+....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 4568899999999999999998544 44578999999999999999999999999999999999998643
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=3.7e-09 Score=77.99 Aligned_cols=72 Identities=24% Similarity=0.341 Sum_probs=62.2
Q ss_pred CCCCCeEEEcCCCCC-----CCH----HHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcc
Q 011105 116 PPHGSEVYLGGIPHD-----ASD----DDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~-----~te----~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i 186 (493)
=++..||+|.-++.+ +-. .+|.+.|.+||.|..++|+.++ +||+|.+.++|.+||+ |++..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 466789999998743 222 4588999999999999999874 9999999999999998 999999
Q ss_pred cCceEEEecc
Q 011105 187 KGKKIKCSAA 196 (493)
Q Consensus 187 ~g~~i~V~~~ 196 (493)
.||.|+|...
T Consensus 83 ~Gr~L~V~~k 92 (95)
T 1ufw_A 83 KGRAVKISGP 92 (95)
T ss_dssp TTEEEEEECC
T ss_pred CCeEEEEecc
Confidence 9999999764
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.71 E-value=6.5e-08 Score=86.87 Aligned_cols=82 Identities=22% Similarity=0.319 Sum_probs=68.5
Q ss_pred CCCCeEEEcCCC-----CCCCHHHHHHHhhccCCeeEEEEeeCC----CCCCcceEEEEEeccHHHHHHHHHHhCCCccc
Q 011105 117 PHGSEVYLGGIP-----HDASDDDLRHFCKSIGEVTEVRIMKGK----DSGEAKGYAFVTFRTKELASQAIEELNSCELK 187 (493)
Q Consensus 117 ~~~~~l~V~nLp-----~~~te~~l~~~f~~~G~v~~v~i~~~~----~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~ 187 (493)
.....+.+.|+- ..-.+++|++.|++||.|.+|.|+++. .+++++|++||+|.+.++|.+|+..|||..+.
T Consensus 122 ~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~ 201 (222)
T 3dxb_A 122 MESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 201 (222)
T ss_dssp CBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred cccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC
Confidence 345566676663 234567899999999999999998554 45589999999999999999999999999999
Q ss_pred CceEEEecccc
Q 011105 188 GKKIKCSAAQA 198 (493)
Q Consensus 188 g~~i~V~~~~~ 198 (493)
||.|.|.++..
T Consensus 202 gr~i~~~~~~~ 212 (222)
T 3dxb_A 202 GRKVVAEVYDQ 212 (222)
T ss_dssp SSBCEEEECCH
T ss_pred CeEEEEEEcCH
Confidence 99999988753
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.62 E-value=2.4e-07 Score=69.58 Aligned_cols=70 Identities=13% Similarity=0.214 Sum_probs=66.1
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcC-----CcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q 011105 294 KALYVKNLPKDITQDRLKELFAHH-----GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~-----G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 368 (493)
++|-|-|||..+++..|+.+++++ |.|+.|.+..+. +=|+|+|.+...|-+|.-+|+|..|.||+|+|.
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 899999999999999999999999 999999999986 569999999999999999999999999999986
Q ss_pred e
Q 011105 369 L 369 (493)
Q Consensus 369 ~ 369 (493)
-
T Consensus 96 T 96 (117)
T 2l9w_A 96 T 96 (117)
T ss_dssp C
T ss_pred C
Confidence 4
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.42 E-value=1.9e-06 Score=64.69 Aligned_cols=74 Identities=16% Similarity=0.280 Sum_probs=67.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc-----CCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceE
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKSI-----GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~~-----G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i 191 (493)
...++|-|-|||..++...|+.|+.++ |.|..|.++.+.. =|+|+|.+...|-+|.-.|+|..|.||+|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 347899999999999999999999999 9999999998864 79999999999999888899999999999
Q ss_pred EEecc
Q 011105 192 KCSAA 196 (493)
Q Consensus 192 ~V~~~ 196 (493)
++...
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 98543
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=1.2e-05 Score=60.03 Aligned_cols=87 Identities=23% Similarity=0.329 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc-----cCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceE
Q 011105 117 PHGSEVYLGGIPHDASDDDLRHFCKS-----IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191 (493)
Q Consensus 117 ~~~~~l~V~nLp~~~te~~l~~~f~~-----~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i 191 (493)
.-..+|.|.|||..+.++.|.-+|+. =|+|..+.... .-|+|+|.+.+.|+++|+ ...+.|.+..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEE
Confidence 34678999999999999999999986 27899888765 379999999999999997 44778999999
Q ss_pred EEeccc--ccccccccCCCCCCC
Q 011105 192 KCSAAQ--AKHRLFIGNVPRNWG 212 (493)
Q Consensus 192 ~V~~~~--~~~~l~v~~l~~~~~ 212 (493)
.|.... ...+|++.+|++.++
T Consensus 77 sV~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECCCCCCCCCCCCSCCCCCC
T ss_pred EEEcCCCCCcceEeeecCCCCCC
Confidence 997754 456899999998765
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.94 E-value=2.8e-05 Score=58.44 Aligned_cols=74 Identities=19% Similarity=0.145 Sum_probs=63.7
Q ss_pred ceEEEccCCCCC-C----HHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q 011105 294 KALYVKNLPKDI-T----QDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (493)
Q Consensus 294 ~~l~v~nl~~~~-t----~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 368 (493)
++|+|.||+..+ . .+.++++|..|+.+.....++.- | -..|.|.+.++|.+|...||+..|.|+.|+|-
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----R-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----K-RVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----T-EEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----e-EEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 789999998764 2 25789999999998888777664 2 47899999999999999999999999999999
Q ss_pred ecCCC
Q 011105 369 LAKPQ 373 (493)
Q Consensus 369 ~a~~~ 373 (493)
++.+-
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 99854
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.74 E-value=9.7e-05 Score=54.66 Aligned_cols=69 Identities=13% Similarity=0.211 Sum_probs=58.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCC--CcceEEEEEeccHHHHHHHHHHhCCCcccC
Q 011105 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSG--EAKGYAFVTFRTKELASQAIEELNSCELKG 188 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g--~~~g~afV~F~~~e~A~~Al~~l~~~~i~g 188 (493)
++|.||+||+.+|++++.+.+..+..+.....+..+.+. ..-.-|||.|.+.+++....+.+++..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 579999999999999999999999888888777765432 233569999999999999999999988754
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=0.00076 Score=50.38 Aligned_cols=75 Identities=24% Similarity=0.335 Sum_probs=64.2
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcC-----CcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEE
Q 011105 294 KALYVKNLPKDITQDRLKELFAHH-----GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~-----G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 368 (493)
++|.|.|||..++++.|.-+|+.- |.|..|.... +-|+|+|.+...|.+.|+. ..+.|++.+|.|.
T Consensus 9 ~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 9 VAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLSLR 79 (104)
T ss_dssp CEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEE
T ss_pred cEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEEEE
Confidence 899999999999999999999872 5799998865 3689999999999999984 4789999999998
Q ss_pred ecCCCCccC
Q 011105 369 LAKPQADQK 377 (493)
Q Consensus 369 ~a~~~~~~~ 377 (493)
-..++...+
T Consensus 80 P~~~~~~~r 88 (104)
T 2dhx_A 80 PAPPRAPAR 88 (104)
T ss_dssp ECCCCCCCC
T ss_pred cCCCCCcce
Confidence 877765543
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.56 E-value=0.00014 Score=54.57 Aligned_cols=74 Identities=20% Similarity=0.177 Sum_probs=63.1
Q ss_pred CCeEEEcCCCCCC-C----HHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEE
Q 011105 119 GSEVYLGGIPHDA-S----DDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC 193 (493)
Q Consensus 119 ~~~l~V~nLp~~~-t----e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V 193 (493)
.++|+|.||+..+ + .+.|+.+|..|+++.....++.- .=..|.|.+.++|.+|-..||+..+.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4789999998755 2 25678999999999998887653 25689999999999999999999999999999
Q ss_pred ecccc
Q 011105 194 SAAQA 198 (493)
Q Consensus 194 ~~~~~ 198 (493)
.++.+
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98873
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.53 E-value=0.00063 Score=50.30 Aligned_cols=79 Identities=10% Similarity=0.113 Sum_probs=62.6
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCC--cccEEEEEeCCHHHHHHHHHhcCCceecC-----eEEE
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE--RSRYGFVHFAERSSAMKALKNTEKYEIDG-----QVLD 366 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~--~~g~~fV~f~~~~~a~~a~~~l~~~~~~g-----~~i~ 366 (493)
.+|.|++||+.+|++++.+.+.....+.....+..+.+.. .-.-|||.|.+.+++..-...++|+.|-+ .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5899999999999999999999998888777765543221 22469999999999999999999998854 2456
Q ss_pred EEecCC
Q 011105 367 CSLAKP 372 (493)
Q Consensus 367 v~~a~~ 372 (493)
|.+|--
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 666643
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.24 E-value=0.00094 Score=49.19 Aligned_cols=58 Identities=17% Similarity=0.340 Sum_probs=48.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhC
Q 011105 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN 182 (493)
Q Consensus 116 ~~~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~ 182 (493)
+.....++| ++|..+...||.++|+.||-|. |+.+.| ..|||.|.+++.|..|+..+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 445566777 9999999999999999999544 666665 389999999999999998653
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.22 E-value=0.003 Score=48.86 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=60.3
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecC-eEEEEEecC
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG-QVLDCSLAK 371 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g-~~i~v~~a~ 371 (493)
.+.|.|-+.|... ...|...|++||.|.+...... ..+..|.|.+..+|.+||.. ||..|.+ ..|-|....
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 4889999999875 6778899999999998887321 46999999999999999995 9999985 678888765
Q ss_pred CC
Q 011105 372 PQ 373 (493)
Q Consensus 372 ~~ 373 (493)
.+
T Consensus 96 d~ 97 (119)
T 1wwh_A 96 DK 97 (119)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 391
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.99 E-value=0.0007 Score=50.26 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=52.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCC--CcceEEEEEeccHHHHHHHHHHhCCCcccC
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSG--EAKGYAFVTFRTKELASQAIEELNSCELKG 188 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g--~~~g~afV~F~~~e~A~~Al~~l~~~~i~g 188 (493)
.+-+|.||.||+.+|++++.+.+..+-.+.....+..+.+- ..-.-|||.|.+.+++....+..++..+.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 45679999999999999988888776555443333333221 122358999999999999999999987744
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.97 E-value=0.0014 Score=48.21 Aligned_cols=54 Identities=22% Similarity=0.366 Sum_probs=45.4
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l 355 (493)
.+.++| +.|..+.-.||.++|+.||.| .|..+.|. .|||.|.+.+.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 367778 999999999999999999843 45555453 8999999999999999975
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.94 E-value=0.0029 Score=48.96 Aligned_cols=72 Identities=11% Similarity=0.138 Sum_probs=58.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccC-ceEEEecc
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG-KKIKCSAA 196 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g-~~i~V~~~ 196 (493)
..+-|.|-+.|+.. ...|..+|++||.|++..... ...+-.|.|.+..+|++||. .|+..|.+ ..|-|.++
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 35679999999985 567788999999999888622 34699999999999999998 89998875 55666665
Q ss_pred c
Q 011105 197 Q 197 (493)
Q Consensus 197 ~ 197 (493)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.87 E-value=0.0025 Score=47.09 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=45.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhC
Q 011105 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN 182 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~ 182 (493)
..++| ++|..+...||.++|+.|| -..|+.+.| ..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 34666 9999999999999999999 445777766 389999999999999998764
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.86 E-value=0.0035 Score=46.53 Aligned_cols=79 Identities=11% Similarity=0.107 Sum_probs=59.0
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCC--cccEEEEEeCCHHHHHHHHHhcCCceecC-----eEE
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE--RSRYGFVHFAERSSAMKALKNTEKYEIDG-----QVL 365 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~--~~g~~fV~f~~~~~a~~a~~~l~~~~~~g-----~~i 365 (493)
+.+|.|+.||+.+|++++.+.+...-.+.....+..+.+.. .-.-|||.|.+.+++..-...++|..|-+ -+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 36899999999999999999888776665555444332211 11368999999999999999999988854 256
Q ss_pred EEEecC
Q 011105 366 DCSLAK 371 (493)
Q Consensus 366 ~v~~a~ 371 (493)
.|.+|.
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 677664
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.75 E-value=0.0015 Score=48.33 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=46.2
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~ 356 (493)
+.|+| +.|..+.-.+|.++|+.|| =..|..+.|. .|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 67777 9999999999999999999 3456666553 89999999999999999764
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.05 E-value=0.012 Score=46.21 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=57.7
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEE-EEeCCCCC--------CC-----CcccEEEEEeCCHHHHHHHHHhcCCce
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITK-VVIPPAKP--------GQ-----ERSRYGFVHFAERSSAMKALKNTEKYE 359 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~-v~i~~~~~--------~~-----~~~g~~fV~f~~~~~a~~a~~~l~~~~ 359 (493)
..|.|-+.|...+ ..|.+.|++||.|.. +.+.+... .. ....+..|+|++..+|.+||.. ||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeE
Confidence 6788888876654 557788999999876 32222110 00 1246889999999999999995 9999
Q ss_pred ecCeEEEEEecCCC
Q 011105 360 IDGQVLDCSLAKPQ 373 (493)
Q Consensus 360 ~~g~~i~v~~a~~~ 373 (493)
|+|..|-|....+.
T Consensus 86 i~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 86 FNGVLLGVIPYTKD 99 (132)
T ss_dssp ETTEECEEEECCHH
T ss_pred eCcEEEEEEECCHH
Confidence 99999989888754
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.54 E-value=0.0083 Score=58.62 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=43.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHH
Q 011105 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179 (493)
Q Consensus 119 ~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~ 179 (493)
.++|+|. .|..+++.+|.++|++||+|.++.+..++ .-||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4899998 79999999999999999999999988754 2799999999999998765
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.30 E-value=0.015 Score=45.60 Aligned_cols=79 Identities=11% Similarity=0.125 Sum_probs=56.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeC-------------CCCC-CcceEEEEEeccHHHHHHHHHHhCC
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG-------------KDSG-EAKGYAFVTFRTKELASQAIEELNS 183 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~-------------~~~g-~~~g~afV~F~~~e~A~~Al~~l~~ 183 (493)
..+.|.|-+.|.+.+. .|..+|++||.|++-.-..+ +-+. ....+..|+|.+..+|.+||. .|+
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 4567888899777654 56679999999876221110 0000 134688999999999999998 899
Q ss_pred CcccCceEEEecccc
Q 011105 184 CELKGKKIKCSAAQA 198 (493)
Q Consensus 184 ~~i~g~~i~V~~~~~ 198 (493)
..|.|.-|-|.++.+
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999999888877653
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.85 E-value=0.012 Score=57.52 Aligned_cols=55 Identities=15% Similarity=0.350 Sum_probs=42.8
Q ss_pred ceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHh
Q 011105 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354 (493)
Q Consensus 294 ~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 354 (493)
+.|+|. .|..+++.+|.++|++||.|.++.+..++ .-||.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 889998 78899999999999999999999998765 35999999999999877653
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.09 E-value=1.7 Score=43.37 Aligned_cols=55 Identities=16% Similarity=0.311 Sum_probs=44.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCC
Q 011105 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS 183 (493)
Q Consensus 120 ~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~ 183 (493)
..++|+ +|..+...+|.++|+.||.| +|+.+.+ ..|||.|.+.+.|..++..+..
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 455555 89999999999999999954 5555544 4799999999999999998753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.12 E-value=1.9 Score=42.89 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=46.1
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 011105 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356 (493)
Q Consensus 292 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~ 356 (493)
....++|+ +|..+...+|.++|+.||.| +|+.+.+. .|||.|.+.+.|..++..++
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 34677776 88888999999999999954 66666553 79999999999999999875
No 403
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=84.70 E-value=0.18 Score=47.87 Aligned_cols=11 Identities=36% Similarity=0.413 Sum_probs=5.9
Q ss_pred CCHHHHHHHHh
Q 011105 305 ITQDRLKELFA 315 (493)
Q Consensus 305 ~t~~~l~~~f~ 315 (493)
++.++|+++..
T Consensus 229 vt~~~l~~i~~ 239 (358)
T 2pk2_A 229 VTLELLDELTH 239 (358)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 45555555544
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=65.00 E-value=15 Score=25.45 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHhcCC-----cEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhcCCceecCeEEEEEecC
Q 011105 304 DITQDRLKELFAHHG-----KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371 (493)
Q Consensus 304 ~~t~~~l~~~f~~~G-----~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 371 (493)
.+..-+|..++..-+ .|-.|.|.. .|.||+-.. ..|..++..|++..+.|+.+.|..+.
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 456666666665443 366788854 388998855 66788899999999999999998764
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=54.44 E-value=55 Score=23.22 Aligned_cols=55 Identities=11% Similarity=0.099 Sum_probs=45.0
Q ss_pred cceEEEccCCCCCCHHHHHHHHhcCCcEEEEEeCCCCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 011105 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355 (493)
Q Consensus 293 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~~a~~a~~~l 355 (493)
.+-|.|-|+|..+-..++--.....|---.|..+ .|.|.|.|.+.++-.-|+..|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 3678899999999888887777777766677665 367999999999999999875
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=52.79 E-value=40 Score=23.13 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHhhccC-----CeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhCCCcccCceEEEecc
Q 011105 129 HDASDDDLRHFCKSIG-----EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196 (493)
Q Consensus 129 ~~~te~~l~~~f~~~G-----~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~~~~i~g~~i~V~~~ 196 (493)
..+...+|..++..-+ .|-.|.|..+ |.||+-... .|..+++.|+...+.|+.+.|..+
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEEEC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEEEC
Confidence 3566777777776443 3666766443 788887654 466778889999999999988765
No 407
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=45.42 E-value=4.4 Score=31.33 Aligned_cols=9 Identities=0% Similarity=0.228 Sum_probs=4.8
Q ss_pred EEEEEeCCH
Q 011105 337 YGFVHFAER 345 (493)
Q Consensus 337 ~~fV~f~~~ 345 (493)
..||...+.
T Consensus 65 I~~I~~pd~ 73 (119)
T 1b34_A 65 IRYFILPDS 73 (119)
T ss_dssp EEEEECCTT
T ss_pred EEEEEeccc
Confidence 555555544
No 408
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=40.85 E-value=95 Score=22.02 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=46.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCcceEEEEEeccHHHHHHHHHHhC
Q 011105 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN 182 (493)
Q Consensus 118 ~~~~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l~ 182 (493)
..|.|.|-|||..+-..++.-.....|---.|..+. |.|.|.|.+.++...|+..|-
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHH
Confidence 468899999999999998887777777666665543 579999999999999998663
No 409
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=35.89 E-value=7.7 Score=42.77 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=11.2
Q ss_pred eEEEEEeccHHHHHHHHHH
Q 011105 162 GYAFVTFRTKELASQAIEE 180 (493)
Q Consensus 162 g~afV~F~~~e~A~~Al~~ 180 (493)
+.++|.-.+.+-|......
T Consensus 228 ~rvlvl~PtraLa~Q~~~~ 246 (1108)
T 3l9o_A 228 QRVIYTSPIKALSNQKYRE 246 (1108)
T ss_dssp CEEEEEESSHHHHHHHHHH
T ss_pred CeEEEEcCcHHHHHHHHHH
Confidence 3466667776666555443
No 410
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=35.85 E-value=70 Score=26.24 Aligned_cols=56 Identities=20% Similarity=0.165 Sum_probs=38.2
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHh--hccCCeeEEEEeeCCCCCCcceEEEEEeccHH-HHHHHHH
Q 011105 121 EVYLGGIPH-D--------ASDDDLRHFC--KSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE-LASQAIE 179 (493)
Q Consensus 121 ~l~V~nLp~-~--------~te~~l~~~f--~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~e-~A~~Al~ 179 (493)
++.|-|+|. . .....|++.| ..|.++. |+.+... .-.+|+|.|.|.+-- --..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 577889887 2 3446899977 9998877 4444444 247889999998753 3344443
No 411
>2ot8_C HnRNP M, heterogeneous nuclear ribonucleoprotein M; heat repeat, nuclear import complex, karyopherin, transport protein; 3.10A {Homo sapiens}
Probab=35.74 E-value=12 Score=20.25 Aligned_cols=9 Identities=56% Similarity=1.379 Sum_probs=5.2
Q ss_pred CCCCCCCCC
Q 011105 485 RGRSRYNPY 493 (493)
Q Consensus 485 ~g~~~~~~y 493 (493)
||++||-||
T Consensus 16 rggnrfepY 24 (30)
T 2ot8_C 16 RGGNRFEPY 24 (30)
T ss_pred cCCcccccc
Confidence 345566666
No 412
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=34.04 E-value=11 Score=41.49 Aligned_cols=10 Identities=10% Similarity=0.026 Sum_probs=4.4
Q ss_pred CCCCCCCHHH
Q 011105 126 GIPHDASDDD 135 (493)
Q Consensus 126 nLp~~~te~~ 135 (493)
.+++..+.-+
T Consensus 180 ~~~f~ltp~Q 189 (1108)
T 3l9o_A 180 TYPFTLDPFQ 189 (1108)
T ss_dssp CCSSCCCHHH
T ss_pred hCCCCCCHHH
Confidence 3344444444
No 413
>2z5n_B Heterogeneous nuclear ribonucleoprotein D0; nuclear transport, importin, exportin, karyopherin, nucleocytoplasmic, hnRNP, NLS, NES; 3.20A {Homo sapiens}
Probab=29.99 E-value=34 Score=18.23 Aligned_cols=8 Identities=38% Similarity=1.032 Sum_probs=6.1
Q ss_pred CCCCCCCC
Q 011105 486 GRSRYNPY 493 (493)
Q Consensus 486 g~~~~~~y 493 (493)
.+++|.||
T Consensus 17 ~q~~y~Py 24 (26)
T 2z5n_B 17 HQNSYKPY 24 (26)
T ss_pred ccccccCC
Confidence 56688887
No 414
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=26.23 E-value=63 Score=26.50 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=33.9
Q ss_pred ceEEEccCCC-C--------CCHHHHHHHH--hcCCcEEEEEeCCCCCCCCcccEEEEEeCCHH
Q 011105 294 KALYVKNLPK-D--------ITQDRLKELF--AHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346 (493)
Q Consensus 294 ~~l~v~nl~~-~--------~t~~~l~~~f--~~~G~v~~v~i~~~~~~~~~~g~~fV~f~~~~ 346 (493)
-++.|-|+|. . .+...|++.| ..|..+. |+.+.+..+ .+|++.|.|.+--
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G--h~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG--HSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB--EEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC--CceeEEEEecCCh
Confidence 4567788876 2 3457899977 8998766 444444432 3689999998733
No 415
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=21.64 E-value=1.6e+02 Score=20.34 Aligned_cols=59 Identities=5% Similarity=0.051 Sum_probs=37.2
Q ss_pred EEEEEeccHHHHHHHHHH---hCCCcccCceEEEecccccccccccCCCCCCCHHHHHHHHHhh
Q 011105 163 YAFVTFRTKELASQAIEE---LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI 223 (493)
Q Consensus 163 ~afV~F~~~e~A~~Al~~---l~~~~i~g~~i~V~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~ 223 (493)
|.++.|....++.+-|+. ++...|.--.|++...+.-..+|| |.+.++++.+...+.+|
T Consensus 7 Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~~r~YE~m~I--l~P~l~ee~~~~~vek~ 68 (77)
T 3zzp_A 7 TTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTPGRYEVNIV--LNPNLDQSQLQNEKEII 68 (77)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSSTTEEEEEEE--ECTTCCHHHHHHHHHHH
T ss_pred EEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccCCCceEEEEE--ECCCCCHHHHHHHHHHH
Confidence 888999776655555542 455555444455444444456666 45777888877777665
No 416
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=20.38 E-value=22 Score=36.08 Aligned_cols=6 Identities=17% Similarity=0.301 Sum_probs=2.3
Q ss_pred HHHhhc
Q 011105 137 RHFCKS 142 (493)
Q Consensus 137 ~~~f~~ 142 (493)
..+|..
T Consensus 387 l~~F~~ 392 (649)
T 3tj1_A 387 TTLFKT 392 (649)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334433
Done!