BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011106
(493 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 195 bits (496), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 153/493 (31%), Positives = 234/493 (47%), Gaps = 55/493 (11%)
Query: 1 MAQSKE-NIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIXXXXXXXXXXXX 59
M +SK ++ + P GH+IP + A + H ++TFV I
Sbjct: 1 MEESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLH-GLTVTFV-----IAGEGPPSKAQRT 54
Query: 60 IDLHEIPFNSSSHGLPPNSENCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLC 119
+ L +P + SS LPP + + T P ++V S + GR P
Sbjct: 55 V-LDSLPSSISSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTA 113
Query: 120 IIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTNLPHNKVTSDEFVLPDFEEA 179
++ D+F VA E +V IF + A SF+ +LP DE V +F E
Sbjct: 114 LVVDLFGTDAFDVAVEFHVPPYIFYPT----TANVLSFFLHLPK----LDETVSCEFREL 165
Query: 180 SR----------IHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIG 229
+ K L D W L N + + GIL NT E +
Sbjct: 166 TEPLMLPGCVPVAGKDFLDPAQDRKDDAYKWLL---HNTKRYKEAEGILVNTFFELEPNA 222
Query: 230 FIYLKRKLGLS---VWPVGPILLSLENRANAGKEGG--TSIKFCKEWLDSKDENSVLYIS 284
L+ GL V+PVGP++ N GK+ T C +WLD++ SVLY+S
Sbjct: 223 IKALQEP-GLDKPPVYPVGPLV-------NIGKQEAKQTEESECLKWLDNQPLGSVLYVS 274
Query: 285 FGSMNTISASQMMQLAMALEASGKNFIWVVRPPIG------FDINSEFRASEWLPEGFEE 338
FGS T++ Q+ +LA+ L S + F+WV+R P G FD +S+ +LP GF E
Sbjct: 275 FGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLE 334
Query: 339 RIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFN 398
R + KRG ++ WAPQ +VL+H +T FL+HCGWNS LE+++ G+P+I WP+ AEQ N
Sbjct: 335 RTK--KRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMN 392
Query: 399 AKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMK 458
A L +++ + G V+ E+V ++ +M E ++GK +R K+ E++E +K
Sbjct: 393 AVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLM-EGEEGKGVRNKMKELKEAACRVLK 451
Query: 459 DEEGCRGSSVKAM 471
D+ G+S KA+
Sbjct: 452 DD----GTSTKAL 460
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 130/499 (26%), Positives = 222/499 (44%), Gaps = 62/499 (12%)
Query: 2 AQSKENIVMFPFMAQGHIIPFLALA--LHIEQRHKNYSITFVSTPLNIXXXXXXXXXXXX 59
A K ++VM P+ QGHI P LA LH+ + + ITFV+T N
Sbjct: 5 ANRKPHVVMIPYPVQGHINPLFKLAKLLHL----RGFHITFVNTEYNHKRLLKSRGPKAF 60
Query: 60 IDLHEIPFNSSSHGLPPNSENCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGR-PPL 118
+ F S GL P + DV + LKP + E+++ L + PP+
Sbjct: 61 DGFTDFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKP-YCELLTRLNHSTNVPPV 119
Query: 119 -CIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTNLPHNKVTSDEFVLPDFE 177
C+++D +T A+E + + ++ S + L N+ H + + ++P F+
Sbjct: 120 TCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLL-------NVMHFRSFVERGIIP-FK 171
Query: 178 EASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGI------------------LC 219
+ S + L + G ++ L +F N N I L
Sbjct: 172 DESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILL 231
Query: 220 NTIEEFDQIGFIYLKRKLGLSVWPVGPILLSLENRANAGKEGGTSIKF------CKEWLD 273
NT E + L + S++P+GP+ L+ + C +WL+
Sbjct: 232 NTFNELESDVINALSSTIP-SIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLE 290
Query: 274 SKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLP 333
SK+ SV+Y++FGS ++ Q+++ A L K+F+W++RP + + F +
Sbjct: 291 SKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSE---- 346
Query: 334 EGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAA 393
F I D RGL+ +W PQ +VL+H + FL+HCGWNS E++ GVP++ WP A
Sbjct: 347 --FTNEIAD--RGLI-ASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFA 401
Query: 394 EQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMI 453
+Q + +F+ E + +E+ VK E++ I V+ DKGK++++K E+++
Sbjct: 402 DQPTDCRFICNEWEIGMEIDTN----VKREELAKLINEVI-AGDKGKKMKQKAMELKK-- 454
Query: 454 KNAMKDEEGCRGSSVKAMD 472
K EE R M+
Sbjct: 455 ----KAEENTRPGGCSYMN 469
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 145/267 (54%), Gaps = 23/267 (8%)
Query: 213 NSNGILCNTIEEFDQ--IGFIYLKRKLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKE 270
++ GI+ NT + +Q I +Y + ++ VGP LL L+ + N K +
Sbjct: 211 DTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGP-LLDLKGQPNP-KLDQAQHDLILK 268
Query: 271 WLDSKDENSVLYISFGSMN-TISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRAS 329
WLD + + SV+++ FGSM + SQ+ ++A+ L+ SG F+W S
Sbjct: 269 WLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-----------SNSAEK 317
Query: 330 EWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGW 389
+ PEGF E + +G++ WAPQ+EVL+H+A F+SHCGWNS+LE++ GVPI+ W
Sbjct: 318 KVFPEGFLEWMELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTW 376
Query: 390 PMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIEL---VMNETDKGKEIRRKV 446
P+ AEQ NA L +E GV + + + K DVVA E+ + + DK + +KV
Sbjct: 377 PIYAEQQLNAFRLVKEWGVGLGL---RVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKV 433
Query: 447 SEVREMIKNAMKDEEGCRGSSVKAMDD 473
E++EM +NA+ D S K +DD
Sbjct: 434 QEMKEMSRNAVVDGGSSLISVGKLIDD 460
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 145/267 (54%), Gaps = 23/267 (8%)
Query: 213 NSNGILCNTIEEFDQ--IGFIYLKRKLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKE 270
++ GI+ NT + +Q I +Y + ++ VGP LL L+ + N K +
Sbjct: 211 DTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGP-LLDLKGQPNP-KLDQAQHDLILK 268
Query: 271 WLDSKDENSVLYISFGSMN-TISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRAS 329
WLD + + SV+++ FGSM + SQ+ ++A+ L+ SG F+W S
Sbjct: 269 WLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-----------SNSAEK 317
Query: 330 EWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGW 389
+ PEGF E + +G++ WAPQ+EVL+H+A F+SHCGWNS+LE++ GVPI+ W
Sbjct: 318 KVFPEGFLEWMELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTW 376
Query: 390 PMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIEL---VMNETDKGKEIRRKV 446
P+ AEQ NA L +E GV + + + K DVVA E+ + + DK + +KV
Sbjct: 377 PIYAEQQLNAFRLVKEWGVGLGL---RVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKV 433
Query: 447 SEVREMIKNAMKDEEGCRGSSVKAMDD 473
E++EM +NA+ D S K +DD
Sbjct: 434 QEMKEMSRNAVVDGGSSLISVGKLIDD 460
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 105/364 (28%), Positives = 170/364 (46%), Gaps = 42/364 (11%)
Query: 98 SLKPAFKEVISSLINQ-GRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYS 156
+++ FK VI + + G+ C++ D FF + +A+E++ +G + L +
Sbjct: 98 AMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHV- 156
Query: 157 FWTNLPHNKVTSDEF-------VLPDFEEASRIHKSQLALNMLEADGTDSWSLFQ--GEN 207
+T+L K S E VLP F E + S L +++ ++ G
Sbjct: 157 -YTDLIREKTGSKEVHDVKSIDVLPGFPE---LKASDLPEGVIKDIDVPFATMLHKMGLE 212
Query: 208 FPAWVNSNGILCNTIEEFDQIGFIYLKRKLGLSVWPVGPILLSLENRANAGKEGGTSIKF 267
P +N + N+ + L K L + VGP L+ R + + G
Sbjct: 213 LP---RANAVAINSFATIHPLIENELNSKFKL-LLNVGPFNLTTPQRKVSDEHG------ 262
Query: 268 CKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFR 327
C EWLD + +SV+YISFGS+ T ++ LA +LE G FIW R
Sbjct: 263 CLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRG----------D 312
Query: 328 ASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPII 387
E LP+GF ER + + + WAPQ+E+L H + FL+H GWNSVLE ++ GVP+I
Sbjct: 313 PKEKLPKGFLERTKTKGK---IVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMI 369
Query: 388 GWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVS 447
P +Q N E + + V V G + E + +EL M+ ++KG +R+K+
Sbjct: 370 SRPFFGDQGLNTILTESVLEIGVGVDNGVLTK---ESIKKALELTMS-SEKGGIMRQKIV 425
Query: 448 EVRE 451
+++E
Sbjct: 426 KLKE 429
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 102/371 (27%), Positives = 176/371 (47%), Gaps = 38/371 (10%)
Query: 106 VISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYY---SFWTNLP 162
++ ++ GRP C++AD F + +A E+ V F +G L+ + +
Sbjct: 102 MVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIG 161
Query: 163 HNKVTSDEFVLPDFEEA-SRIHKSQLALNMLEADGTDSWSLF---QGENFPAWVNSNGIL 218
+ + E L +F S++ L ++ + +S G+ P + +
Sbjct: 162 VSGIQGREDELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLP---KATAVF 218
Query: 219 CNTIEEFDQIGFIYLKRKLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDEN 278
N+ EE D LK KL + +GP L G C +WL +
Sbjct: 219 INSFEELDDSLTNDLKSKLK-TYLNIGPFNLITPPPVVPNTTG------CLQWLKERKPT 271
Query: 279 SVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEE 338
SV+YISFG++ T ++++ L+ ALEAS FIW +R +A LPEGF E
Sbjct: 272 SVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRD----------KARVHLPEGFLE 321
Query: 339 RIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFN 398
+ R G+++ WAPQ EVL+H A AF++HCGWNS+ E++ GVP+I P +Q N
Sbjct: 322 KTRG--YGMVVP-WAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLN 378
Query: 399 AKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMK 458
+ +E + + V + G + +++ + ++++ +KGK++R + +RE A+
Sbjct: 379 GRMVEDVLEIGVRIEGGVFTK---SGLMSCFDQILSQ-EKGKKLRENLRALRETADRAV- 433
Query: 459 DEEGCRGSSVK 469
G +GSS +
Sbjct: 434 ---GPKGSSTE 441
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 37/191 (19%)
Query: 266 KFCKEWLDSKDENSVLYISFGS-MNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINS 324
K ++++ S EN V+ S GS ++ + + +A AL + +W FD N
Sbjct: 9 KEXEDFVQSSGENGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWR------FDGNK 62
Query: 325 EFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGV 384
P+ R + W PQ ++L H T AF++H G N + EA+ HG+
Sbjct: 63 --------PDTLGLNTR-------LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGI 107
Query: 385 PIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVK-----HEDVVAKIELVMNETDKG 439
P +G P+ F +Q + ARG V D++ ++ V+N+
Sbjct: 108 PXVGIPL---------FADQPDNIAHXKARGAAVRVDFNTXSSTDLLNALKRVINDPSY- 157
Query: 440 KEIRRKVSEVR 450
KE K+S ++
Sbjct: 158 KENVXKLSRIQ 168
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 349 MKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGV 408
+ W PQL++L+ AF++H G S +EAL + VP++ P AEQ NA+ + E+G+
Sbjct: 309 VHQWVPQLDILTK--ASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERI-VELGL 365
Query: 409 CVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMI 453
+ R + K + V + +D G + +++ VR+ I
Sbjct: 366 GRHIPRDQVTAEKLREAVLAV-----ASDPG--VAERLAAVRQEI 403
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 17/145 (11%)
Query: 349 MKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGV 408
+ +W PQL +L R F++H G E L P+I P A +QF NA L Q +G
Sbjct: 287 VHDWVPQLAIL--RQADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML-QGLG- 342
Query: 409 CVEVARGKTCEVKHEDVVAKIELVM-NETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSS 467
VAR E D++ + L + ++ + + +RR I+ M E G R +
Sbjct: 343 ---VARKLATEEATADLLRETALALVDDPEVARRLRR--------IQAEMAQEGGTR-RA 390
Query: 468 VKAMDDFLSAAISMKNKINGRVNNG 492
++ L A + + R N G
Sbjct: 391 ADLIEAELPARHERQEPVGDRPNVG 415
>pdb|3IXR|A Chain A, Crystal Structure Of Xylella Fastidiosa Prxq C47s Mutant
Length = 179
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 20/119 (16%)
Query: 142 IFSGSGSYGLACYYSFW--------TNLPHNKVTSDEF--VLPDFEEASRIHKSQLALNM 191
+ SGS L+ Y + W N P + EF +LP FE+ I+ + L ++
Sbjct: 37 MLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQ---INATVLGVSR 93
Query: 192 LEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQI--GFIYLKRKLGL--SVWPVGP 246
DS+ QG FP +S+ ILC + FD I +Y ++ +G+ S + +GP
Sbjct: 94 DSVKSHDSFCAKQGFTFPLVSDSDAILC---KAFDVIKEKTMYGRQVIGIERSTFLIGP 149
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 19/139 (13%)
Query: 266 KFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSE 325
+F EW D+ V+ +S G+ A A + W V +G ++
Sbjct: 235 RFLGEWTRPADDLPVVLVSLGTTFNDRPGFFRDCARAFDGQP----WHVVXTLGGQVDPA 290
Query: 326 FRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVP 385
A LP E W P ++VL C ++H G ++ EAL G P
Sbjct: 291 --ALGDLPPNVE-----------AHRWVPHVKVLEQATVC--VTHGGXGTLXEALYWGRP 335
Query: 386 IIGWPMAAEQFFNAKFLEQ 404
++ P + + A+ ++Q
Sbjct: 336 LVVVPQSFDVQPXARRVDQ 354
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 19/139 (13%)
Query: 266 KFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSE 325
+F EW D+ V+ +S G+ A A + W V +G ++
Sbjct: 235 RFLGEWTRPADDLPVVLVSLGTTFNDRPGFFRDCARAFDGQP----WHVVXTLGGQVDPA 290
Query: 326 FRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVP 385
A LP E W P ++VL C ++H G ++ EAL G P
Sbjct: 291 --ALGDLPPNVE-----------AHRWVPHVKVLEQATVC--VTHGGXGTLXEALYWGRP 335
Query: 386 IIGWPMAAEQFFNAKFLEQ 404
++ P + + A+ ++Q
Sbjct: 336 LVVVPQSFDVQPXARRVDQ 354
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 349 MKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQF 396
+++W PQ +L H + H G + L AL GVP + +P A + F
Sbjct: 296 LESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 351 NWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQ 395
W P VL+H C L+H +VLEA GVP++ P A +
Sbjct: 287 QWIPFHSVLAHARAC--LTHGTTGAVLEAFAAGVPLVLVPHFATE 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,107,781
Number of Sequences: 62578
Number of extensions: 561206
Number of successful extensions: 1197
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1173
Number of HSP's gapped (non-prelim): 24
length of query: 493
length of database: 14,973,337
effective HSP length: 103
effective length of query: 390
effective length of database: 8,527,803
effective search space: 3325843170
effective search space used: 3325843170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)