Query 011106
Match_columns 493
No_of_seqs 134 out of 1453
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 08:11:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011106.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011106hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.2E-67 2.6E-72 527.5 45.8 456 4-482 8-473 (477)
2 PLN02534 UDP-glycosyltransfera 100.0 1.2E-66 2.6E-71 519.0 44.9 460 4-481 7-487 (491)
3 PLN02173 UDP-glucosyl transfer 100.0 1.7E-66 3.7E-71 513.1 44.3 436 1-479 1-447 (449)
4 PLN02670 transferase, transfer 100.0 4.3E-66 9.4E-71 512.5 45.5 456 4-483 5-468 (472)
5 PLN02208 glycosyltransferase f 100.0 2.4E-66 5.2E-71 513.3 43.5 438 1-481 1-440 (442)
6 PLN02555 limonoid glucosyltran 100.0 2.8E-66 6E-71 515.8 44.0 452 5-485 7-474 (480)
7 PLN02992 coniferyl-alcohol glu 100.0 4.7E-66 1E-70 512.6 45.4 447 1-482 1-471 (481)
8 PLN03007 UDP-glucosyltransfera 100.0 8.3E-66 1.8E-70 519.1 44.4 458 1-481 1-481 (482)
9 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.4E-65 3.1E-70 509.1 45.3 436 5-480 7-450 (451)
10 PLN02764 glycosyltransferase f 100.0 1.3E-65 2.8E-70 504.9 43.8 441 1-482 1-447 (453)
11 PLN00414 glycosyltransferase f 100.0 6.1E-65 1.3E-69 503.9 44.0 438 1-482 1-442 (446)
12 PLN02152 indole-3-acetate beta 100.0 5.1E-65 1.1E-69 503.4 42.8 444 4-478 2-454 (455)
13 PLN02210 UDP-glucosyl transfer 100.0 2.6E-64 5.7E-69 502.1 44.5 434 4-479 7-454 (456)
14 PLN02562 UDP-glycosyltransfera 100.0 3.9E-64 8.4E-69 500.5 44.0 433 1-479 1-448 (448)
15 PLN03015 UDP-glucosyl transfer 100.0 6.3E-64 1.4E-68 494.4 43.4 441 5-478 3-466 (470)
16 PLN02207 UDP-glycosyltransfera 100.0 9.9E-64 2.2E-68 495.2 44.3 445 3-482 1-467 (468)
17 PLN00164 glucosyltransferase; 100.0 1.6E-63 3.5E-68 499.6 44.6 447 3-482 1-475 (480)
18 PLN03004 UDP-glycosyltransfera 100.0 8.8E-64 1.9E-68 494.1 41.2 436 4-469 2-450 (451)
19 PLN02448 UDP-glycosyltransfera 100.0 9.7E-63 2.1E-67 494.4 43.5 435 5-481 10-458 (459)
20 PLN02554 UDP-glycosyltransfera 100.0 5.2E-62 1.1E-66 490.8 43.1 441 4-481 1-479 (481)
21 PLN02167 UDP-glycosyltransfera 100.0 1.5E-60 3.2E-65 479.5 42.9 445 4-480 2-472 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1E-48 2.2E-53 395.4 28.4 400 6-455 21-448 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 3.9E-50 8.5E-55 413.2 4.2 393 7-455 2-425 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.4E-43 3.1E-48 353.3 28.0 389 11-478 1-390 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 4.4E-43 9.6E-48 351.4 21.9 374 6-454 1-386 (401)
26 COG1819 Glycosyl transferases, 100.0 2.3E-42 5E-47 340.0 23.5 395 5-479 1-400 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 4E-41 8.7E-46 346.5 22.8 414 5-454 5-437 (496)
28 PRK12446 undecaprenyldiphospho 100.0 6.1E-26 1.3E-30 220.8 27.0 312 6-436 2-326 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 2.3E-24 5E-29 209.1 24.7 306 6-432 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 3.8E-22 8.1E-27 191.8 27.7 328 6-449 1-338 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 1.1E-21 2.5E-26 189.7 22.0 305 7-436 1-315 (321)
32 PRK00726 murG undecaprenyldiph 99.8 4E-18 8.7E-23 168.1 31.7 344 6-479 2-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 3.6E-16 7.7E-21 153.9 30.1 317 7-436 1-325 (350)
34 TIGR00215 lpxB lipid-A-disacch 99.7 3.6E-16 7.8E-21 154.6 24.3 352 5-476 5-384 (385)
35 COG4671 Predicted glycosyl tra 99.7 3.1E-15 6.7E-20 137.0 23.4 341 5-434 9-364 (400)
36 TIGR03590 PseG pseudaminic aci 99.7 1.6E-15 3.5E-20 143.0 22.4 106 278-401 170-278 (279)
37 TIGR01133 murG undecaprenyldip 99.7 1.4E-14 3.1E-19 142.4 29.2 77 354-436 243-322 (348)
38 PRK13609 diacylglycerol glucos 99.7 6.4E-14 1.4E-18 139.4 27.9 136 277-436 201-339 (380)
39 PRK13608 diacylglycerol glucos 99.6 5.4E-13 1.2E-17 132.8 25.1 167 277-480 201-371 (391)
40 PRK00025 lpxB lipid-A-disaccha 99.6 4E-13 8.6E-18 133.8 24.1 353 6-479 2-376 (380)
41 PF04101 Glyco_tran_28_C: Glyc 99.5 1.4E-15 3.1E-20 132.6 -1.6 137 280-436 1-145 (167)
42 PLN02605 monogalactosyldiacylg 99.5 1.2E-11 2.6E-16 123.0 25.1 82 344-435 264-347 (382)
43 TIGR03492 conserved hypothetic 99.4 2.8E-10 6.1E-15 112.8 27.5 332 15-436 6-365 (396)
44 PF03033 Glyco_transf_28: Glyc 99.3 9.8E-12 2.1E-16 104.9 9.4 121 8-148 1-132 (139)
45 PLN02871 UDP-sulfoquinovose:DA 99.3 1.5E-08 3.3E-13 103.5 32.5 142 280-451 264-416 (465)
46 cd03814 GT1_like_2 This family 99.3 5.3E-09 1.1E-13 102.9 28.0 93 344-448 246-345 (364)
47 cd03823 GT1_ExpE7_like This fa 99.2 9.3E-08 2E-12 93.8 30.2 81 344-436 242-330 (359)
48 COG3980 spsG Spore coat polysa 99.1 6.9E-09 1.5E-13 92.9 19.2 136 278-436 158-294 (318)
49 cd03800 GT1_Sucrose_synthase T 99.1 4E-08 8.6E-13 98.3 26.5 94 344-449 282-382 (398)
50 cd03816 GT1_ALG1_like This fam 99.1 9.7E-08 2.1E-12 96.0 27.2 92 345-450 294-399 (415)
51 cd03817 GT1_UGDG_like This fam 99.1 2.5E-07 5.4E-12 91.1 28.4 97 344-453 258-361 (374)
52 cd03808 GT1_cap1E_like This fa 99.0 7.8E-08 1.7E-12 94.0 24.4 94 344-449 245-343 (359)
53 cd03794 GT1_wbuB_like This fam 99.0 1.2E-07 2.7E-12 93.8 26.1 96 344-451 274-381 (394)
54 cd03801 GT1_YqgM_like This fam 99.0 2.7E-07 5.8E-12 90.4 28.0 81 344-436 255-342 (374)
55 cd04962 GT1_like_5 This family 99.0 1.9E-07 4E-12 92.6 26.8 94 344-449 252-350 (371)
56 TIGR00236 wecB UDP-N-acetylglu 99.0 4.9E-08 1.1E-12 96.6 18.7 85 344-446 254-341 (365)
57 PRK10307 putative glycosyl tra 98.9 1.2E-06 2.6E-11 88.2 28.7 118 344-482 283-409 (412)
58 cd03818 GT1_ExpC_like This fam 98.9 1.7E-06 3.7E-11 86.6 29.0 98 344-451 280-382 (396)
59 cd03820 GT1_amsD_like This fam 98.9 9.7E-07 2.1E-11 85.8 25.9 98 344-453 234-337 (348)
60 cd03795 GT1_like_4 This family 98.9 7.9E-07 1.7E-11 87.4 25.0 146 280-451 192-348 (357)
61 cd03786 GT1_UDP-GlcNAc_2-Epime 98.9 7.9E-08 1.7E-12 95.0 17.4 133 278-436 198-338 (363)
62 PRK05749 3-deoxy-D-manno-octul 98.9 1.2E-06 2.7E-11 88.5 25.5 95 346-449 303-402 (425)
63 cd03798 GT1_wlbH_like This fam 98.9 7.6E-06 1.7E-10 80.3 30.7 81 344-436 258-345 (377)
64 cd03822 GT1_ecORF704_like This 98.8 7.6E-06 1.7E-10 80.5 29.8 94 344-450 246-349 (366)
65 PF04007 DUF354: Protein of un 98.8 1.4E-05 3.1E-10 76.5 28.6 300 7-433 2-308 (335)
66 cd03819 GT1_WavL_like This fam 98.7 1.2E-05 2.6E-10 79.0 27.4 98 344-451 245-347 (355)
67 cd03805 GT1_ALG2_like This fam 98.7 8.9E-06 1.9E-10 81.3 26.6 93 344-449 279-378 (392)
68 TIGR03449 mycothiol_MshA UDP-N 98.7 5.9E-06 1.3E-10 83.0 25.2 95 344-450 282-383 (405)
69 cd03821 GT1_Bme6_like This fam 98.7 1.8E-05 3.8E-10 77.8 27.8 92 344-449 261-359 (375)
70 cd03811 GT1_WabH_like This fam 98.7 5.4E-06 1.2E-10 80.6 23.1 81 344-436 245-333 (353)
71 cd03796 GT1_PIG-A_like This fa 98.7 1.2E-05 2.5E-10 80.6 25.9 79 344-436 249-334 (398)
72 COG1519 KdtA 3-deoxy-D-manno-o 98.7 3E-05 6.4E-10 74.6 26.7 338 9-454 52-405 (419)
73 cd03825 GT1_wcfI_like This fam 98.7 1.4E-05 3.1E-10 78.7 25.9 81 344-436 243-331 (365)
74 cd03799 GT1_amsK_like This is 98.7 1.3E-05 2.7E-10 78.8 25.1 93 344-448 235-340 (355)
75 PRK09922 UDP-D-galactose:(gluc 98.6 1.9E-05 4E-10 78.0 25.2 96 344-451 235-342 (359)
76 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 4.7E-06 1E-10 82.0 20.7 131 278-434 201-338 (365)
77 cd05844 GT1_like_7 Glycosyltra 98.6 2.1E-05 4.5E-10 77.7 24.2 93 344-448 244-349 (367)
78 cd03807 GT1_WbnK_like This fam 98.6 5.6E-05 1.2E-09 74.0 26.8 79 344-436 250-333 (365)
79 TIGR02468 sucrsPsyn_pln sucros 98.5 0.00015 3.4E-09 78.5 30.3 98 344-451 547-653 (1050)
80 PRK14089 ipid-A-disaccharide s 98.5 4.7E-06 1E-10 80.5 15.3 101 356-475 230-345 (347)
81 cd03802 GT1_AviGT4_like This f 98.5 9.1E-05 2E-09 72.1 24.5 129 281-436 173-309 (335)
82 cd04951 GT1_WbdM_like This fam 98.5 9.6E-05 2.1E-09 72.6 24.9 79 344-436 244-327 (360)
83 TIGR03088 stp2 sugar transfera 98.4 0.0001 2.3E-09 73.1 24.8 92 345-448 255-351 (374)
84 KOG3349 Predicted glycosyltran 98.4 1.2E-06 2.7E-11 70.8 8.4 121 280-414 5-134 (170)
85 cd04955 GT1_like_6 This family 98.4 0.00031 6.7E-09 69.1 27.4 77 344-436 247-331 (363)
86 PLN02275 transferase, transfer 98.4 0.00037 7.9E-09 69.1 27.5 76 344-433 285-371 (371)
87 TIGR02472 sucr_P_syn_N sucrose 98.4 0.00021 4.6E-09 72.5 26.2 94 344-447 316-418 (439)
88 PRK01021 lpxB lipid-A-disaccha 98.4 0.00035 7.6E-09 71.3 26.2 204 222-453 368-589 (608)
89 COG0381 WecB UDP-N-acetylgluco 98.4 0.00017 3.7E-09 68.9 22.2 360 5-489 3-379 (383)
90 TIGR02149 glgA_Coryne glycogen 98.3 0.00072 1.6E-08 67.4 28.4 93 346-448 261-365 (388)
91 cd03812 GT1_CapH_like This fam 98.3 0.0001 2.2E-09 72.4 21.7 80 344-436 248-332 (358)
92 PF02684 LpxB: Lipid-A-disacch 98.3 0.00018 3.8E-09 70.1 21.9 201 222-457 140-358 (373)
93 cd03809 GT1_mtfB_like This fam 98.3 5.6E-05 1.2E-09 74.2 18.5 91 344-448 252-349 (365)
94 PRK15179 Vi polysaccharide bio 98.3 0.0031 6.6E-08 66.9 32.0 96 344-449 573-673 (694)
95 TIGR03087 stp1 sugar transfera 98.3 7.9E-05 1.7E-09 74.6 19.3 92 344-449 279-376 (397)
96 PF02350 Epimerase_2: UDP-N-ac 98.3 5.7E-06 1.2E-10 80.6 10.2 133 276-436 178-319 (346)
97 cd03804 GT1_wbaZ_like This fam 98.2 0.00013 2.9E-09 71.6 20.2 127 281-436 197-327 (351)
98 PLN02846 digalactosyldiacylgly 98.2 0.0023 5E-08 64.3 26.4 73 349-436 288-364 (462)
99 PLN02949 transferase, transfer 98.1 0.0015 3.2E-08 66.4 24.8 116 344-483 334-459 (463)
100 cd03791 GT1_Glycogen_synthase_ 98.1 0.0034 7.4E-08 64.5 27.9 84 344-435 350-442 (476)
101 PRK00654 glgA glycogen synthas 98.1 0.0041 8.8E-08 63.7 27.0 83 344-434 336-427 (466)
102 TIGR02470 sucr_synth sucrose s 98.0 0.019 4.2E-07 61.2 30.4 93 345-447 619-725 (784)
103 TIGR02095 glgA glycogen/starch 97.9 0.012 2.6E-07 60.4 27.6 83 344-434 345-436 (473)
104 cd03792 GT1_Trehalose_phosphor 97.9 0.0022 4.7E-08 63.6 21.2 91 344-448 251-350 (372)
105 PF00534 Glycos_transf_1: Glyc 97.9 0.00021 4.7E-09 62.2 11.7 93 344-448 72-171 (172)
106 cd03806 GT1_ALG11_like This fa 97.8 0.0035 7.5E-08 63.2 21.5 80 344-436 304-393 (419)
107 cd04949 GT1_gtfA_like This fam 97.8 0.0036 7.7E-08 62.0 21.1 102 344-454 260-364 (372)
108 PLN02501 digalactosyldiacylgly 97.7 0.047 1E-06 56.9 27.7 76 346-436 602-682 (794)
109 COG5017 Uncharacterized conser 97.7 0.0004 8.8E-09 55.4 10.1 109 281-414 2-123 (161)
110 PRK15484 lipopolysaccharide 1, 97.7 0.0022 4.7E-08 63.8 17.3 116 344-482 256-379 (380)
111 PLN00142 sucrose synthase 97.7 0.019 4.2E-07 61.3 24.7 67 371-447 677-748 (815)
112 PF13844 Glyco_transf_41: Glyc 97.6 0.0016 3.5E-08 64.9 15.0 143 277-436 283-431 (468)
113 PLN02316 synthase/transferase 97.6 0.076 1.7E-06 58.4 28.6 119 344-479 899-1032(1036)
114 cd04946 GT1_AmsK_like This fam 97.5 0.0036 7.8E-08 62.8 16.3 97 344-449 288-391 (407)
115 cd04950 GT1_like_1 Glycosyltra 97.5 0.12 2.5E-06 51.3 28.2 79 344-436 253-341 (373)
116 cd03813 GT1_like_3 This family 97.4 0.034 7.4E-07 57.1 21.7 94 344-448 353-455 (475)
117 PRK15427 colanic acid biosynth 97.4 0.0069 1.5E-07 60.8 16.1 114 344-480 278-405 (406)
118 TIGR02918 accessory Sec system 97.3 0.066 1.4E-06 55.0 22.5 103 344-453 375-484 (500)
119 COG0763 LpxB Lipid A disacchar 97.3 0.18 4E-06 48.6 26.5 219 222-479 143-380 (381)
120 TIGR02193 heptsyl_trn_I lipopo 97.1 0.06 1.3E-06 52.1 19.0 47 7-53 1-47 (319)
121 PF13692 Glyco_trans_1_4: Glyc 96.9 0.0037 8E-08 51.8 7.4 80 344-435 52-135 (135)
122 PRK15490 Vi polysaccharide bio 96.8 0.72 1.6E-05 47.4 28.2 74 344-429 454-532 (578)
123 PRK09814 beta-1,6-galactofuran 96.8 0.0078 1.7E-07 58.6 9.5 111 344-476 206-331 (333)
124 COG3914 Spy Predicted O-linked 96.7 0.069 1.5E-06 53.7 15.3 155 276-454 427-589 (620)
125 PRK14099 glycogen synthase; Pr 96.6 1 2.2E-05 46.4 26.3 38 3-44 1-46 (485)
126 cd01635 Glycosyltransferase_GT 96.6 0.21 4.6E-06 44.8 17.6 49 344-394 160-216 (229)
127 PRK10422 lipopolysaccharide co 96.6 0.41 8.9E-06 47.0 20.3 53 1-53 1-53 (352)
128 PF13477 Glyco_trans_4_2: Glyc 96.3 0.036 7.8E-07 46.1 9.6 102 7-144 1-106 (139)
129 KOG4626 O-linked N-acetylgluco 96.3 0.07 1.5E-06 53.9 12.5 125 277-414 757-889 (966)
130 PRK14098 glycogen synthase; Pr 96.2 0.18 3.9E-06 51.8 15.6 113 344-480 361-485 (489)
131 TIGR02201 heptsyl_trn_III lipo 96.1 0.84 1.8E-05 44.6 19.2 107 7-142 1-108 (344)
132 PHA01633 putative glycosyl tra 96.0 0.095 2.1E-06 50.6 11.8 101 344-453 200-324 (335)
133 cd03789 GT1_LPS_heptosyltransf 95.1 1.6 3.4E-05 41.3 16.8 47 7-53 1-47 (279)
134 COG1817 Uncharacterized protei 94.7 3.8 8.3E-05 38.4 19.7 106 13-147 7-114 (346)
135 PF06722 DUF1205: Protein of u 94.5 0.051 1.1E-06 41.9 3.8 53 265-317 27-84 (97)
136 PF13579 Glyco_trans_4_4: Glyc 94.1 0.072 1.6E-06 45.0 4.6 95 20-144 5-103 (160)
137 TIGR02195 heptsyl_trn_II lipop 94.1 6 0.00013 38.4 19.1 104 7-142 1-105 (334)
138 PRK10017 colanic acid biosynth 94.1 1.9 4.1E-05 43.3 15.1 85 357-454 323-408 (426)
139 PHA01630 putative group 1 glyc 93.9 0.88 1.9E-05 44.2 12.0 78 352-436 197-295 (331)
140 PF06258 Mito_fiss_Elm1: Mitoc 93.9 6.4 0.00014 37.7 17.8 58 354-414 221-282 (311)
141 PF13524 Glyco_trans_1_2: Glyc 93.5 0.5 1.1E-05 36.0 7.8 55 370-436 9-63 (92)
142 PF12000 Glyco_trans_4_3: Gkyc 93.1 1.1 2.4E-05 38.6 9.9 43 102-144 52-95 (171)
143 PRK10125 putative glycosyl tra 93.0 1.9 4.1E-05 43.2 13.1 101 294-429 256-365 (405)
144 TIGR02919 accessory Sec system 92.2 5.7 0.00012 40.1 15.2 125 277-436 282-412 (438)
145 KOG2941 Beta-1,4-mannosyltrans 91.8 12 0.00027 35.7 23.0 126 4-149 11-141 (444)
146 TIGR02400 trehalose_OtsA alpha 91.4 2.1 4.6E-05 43.5 11.3 104 350-479 341-455 (456)
147 COG0859 RfaF ADP-heptose:LPS h 91.3 13 0.00027 36.2 16.2 107 5-142 1-107 (334)
148 TIGR03713 acc_sec_asp1 accesso 91.1 0.93 2E-05 46.8 8.5 93 345-454 409-507 (519)
149 COG4370 Uncharacterized protei 90.6 1.4 3E-05 41.0 8.0 106 351-481 301-410 (412)
150 PLN02939 transferase, transfer 89.4 11 0.00025 41.4 15.0 84 344-434 836-930 (977)
151 PF08660 Alg14: Oligosaccharid 89.4 3.9 8.5E-05 35.3 9.6 114 11-145 3-129 (170)
152 PF01975 SurE: Survival protei 89.2 0.9 2E-05 40.2 5.7 42 6-50 1-42 (196)
153 PF13439 Glyco_transf_4: Glyco 87.7 5.5 0.00012 33.8 9.8 29 15-45 11-39 (177)
154 COG1618 Predicted nucleotide k 86.7 2.9 6.3E-05 35.3 6.7 59 1-66 1-59 (179)
155 cd02067 B12-binding B12 bindin 86.6 5.4 0.00012 32.0 8.4 37 7-45 1-37 (119)
156 PRK13933 stationary phase surv 85.2 15 0.00033 33.9 11.4 30 116-145 87-129 (253)
157 cd03788 GT1_TPS Trehalose-6-Ph 84.6 4 8.8E-05 41.6 8.3 73 349-436 345-428 (460)
158 PRK02261 methylaspartate mutas 82.2 3.4 7.3E-05 34.2 5.4 42 3-46 1-42 (137)
159 TIGR00715 precor6x_red precorr 81.6 10 0.00022 35.2 8.9 90 7-143 2-98 (256)
160 PRK10916 ADP-heptose:LPS hepto 81.5 15 0.00032 35.9 10.6 105 6-142 1-106 (348)
161 TIGR00087 surE 5'/3'-nucleotid 80.8 12 0.00027 34.3 9.0 100 22-145 16-128 (244)
162 COG0496 SurE Predicted acid ph 79.1 11 0.00024 34.6 8.0 99 22-147 16-127 (252)
163 PRK08057 cobalt-precorrin-6x r 78.7 15 0.00033 33.9 8.9 91 6-144 3-99 (248)
164 PLN03063 alpha,alpha-trehalose 78.4 13 0.00029 40.8 9.8 106 352-482 363-479 (797)
165 PF04413 Glycos_transf_N: 3-De 77.7 13 0.00029 32.6 8.0 100 9-145 24-126 (186)
166 PRK13932 stationary phase surv 77.2 16 0.00035 33.8 8.6 39 4-47 4-43 (257)
167 PRK08006 replicative DNA helic 77.1 25 0.00055 35.9 10.9 43 8-51 227-269 (471)
168 PRK02797 4-alpha-L-fucosyltran 76.3 32 0.00069 32.7 10.3 81 345-433 206-292 (322)
169 PF02571 CbiJ: Precorrin-6x re 76.0 17 0.00037 33.6 8.5 39 101-144 56-100 (249)
170 PF02441 Flavoprotein: Flavopr 75.3 4.6 0.0001 33.0 4.2 44 6-52 1-44 (129)
171 PRK08506 replicative DNA helic 75.2 25 0.00053 36.1 10.3 42 8-51 195-236 (472)
172 PRK06718 precorrin-2 dehydroge 74.6 44 0.00094 29.8 10.6 147 278-457 11-166 (202)
173 cd03793 GT1_Glycogen_synthase_ 74.4 11 0.00024 39.1 7.4 78 354-436 467-553 (590)
174 COG0003 ArsA Predicted ATPase 74.3 27 0.00059 33.6 9.6 42 6-49 2-44 (322)
175 cd02070 corrinoid_protein_B12- 74.1 27 0.00058 31.1 9.1 38 5-44 82-119 (201)
176 PRK10964 ADP-heptose:LPS hepto 73.8 24 0.00052 34.0 9.5 47 6-52 1-47 (322)
177 TIGR03600 phage_DnaB phage rep 73.6 31 0.00068 34.7 10.5 42 8-51 197-239 (421)
178 PF03796 DnaB_C: DnaB-like hel 72.9 6.8 0.00015 36.5 5.2 43 8-52 22-65 (259)
179 smart00851 MGS MGS-like domain 72.5 27 0.00058 26.3 7.6 28 22-53 2-29 (90)
180 PRK05595 replicative DNA helic 72.4 26 0.00057 35.5 9.7 42 8-51 204-246 (444)
181 PF10093 DUF2331: Uncharacteri 72.0 1E+02 0.0023 30.2 20.3 88 292-389 193-288 (374)
182 cd01424 MGS_CPS_II Methylglyox 71.9 33 0.00072 26.9 8.3 84 17-142 10-100 (110)
183 PRK13789 phosphoribosylamine-- 71.7 13 0.00029 37.5 7.2 36 1-44 1-36 (426)
184 TIGR02370 pyl_corrinoid methyl 71.3 24 0.00053 31.2 8.1 40 5-46 84-123 (197)
185 PRK13934 stationary phase surv 71.0 40 0.00087 31.4 9.5 25 20-47 14-38 (266)
186 PRK08840 replicative DNA helic 70.6 44 0.00096 34.1 10.8 43 8-51 220-262 (464)
187 PRK06321 replicative DNA helic 70.5 48 0.001 33.9 11.0 43 8-51 229-271 (472)
188 TIGR01470 cysG_Nterm siroheme 70.2 80 0.0017 28.1 11.9 150 278-457 10-166 (205)
189 PRK08305 spoVFB dipicolinate s 69.3 9.9 0.00021 33.6 5.0 49 1-51 1-49 (196)
190 COG1703 ArgK Putative periplas 68.9 27 0.00058 33.0 7.9 41 4-46 50-90 (323)
191 TIGR02398 gluc_glyc_Psyn gluco 68.8 1.2E+02 0.0026 31.3 13.3 110 347-481 364-483 (487)
192 PRK00346 surE 5'(3')-nucleotid 68.2 47 0.001 30.7 9.4 25 22-49 16-40 (250)
193 PRK13935 stationary phase surv 67.6 51 0.0011 30.5 9.4 30 116-145 86-128 (253)
194 PRK09165 replicative DNA helic 67.6 42 0.00091 34.6 10.0 45 8-52 220-277 (497)
195 PRK06849 hypothetical protein; 66.9 24 0.00052 35.1 8.0 36 4-45 3-38 (389)
196 COG0438 RfaG Glycosyltransfera 66.6 1.1E+02 0.0025 28.5 16.3 80 345-436 257-343 (381)
197 cd00532 MGS-like MGS-like doma 66.3 42 0.0009 26.5 7.8 85 18-143 10-105 (112)
198 PRK13931 stationary phase surv 65.5 44 0.00096 31.1 8.7 30 116-145 87-129 (261)
199 cd07039 TPP_PYR_POX Pyrimidine 65.2 87 0.0019 26.7 10.6 27 364-390 64-96 (164)
200 PRK08760 replicative DNA helic 65.2 46 0.001 34.1 9.7 42 8-50 232-273 (476)
201 PRK06904 replicative DNA helic 65.2 63 0.0014 33.1 10.6 43 8-51 224-266 (472)
202 PF06925 MGDG_synth: Monogalac 65.0 19 0.00041 30.9 6.0 44 97-145 75-124 (169)
203 PRK02155 ppnK NAD(+)/NADH kina 64.4 40 0.00087 32.0 8.5 52 365-436 65-120 (291)
204 cd07038 TPP_PYR_PDC_IPDC_like 64.3 77 0.0017 27.0 9.5 27 364-390 60-92 (162)
205 PF02844 GARS_N: Phosphoribosy 62.3 50 0.0011 25.6 7.1 88 6-142 1-91 (100)
206 PRK07004 replicative DNA helic 61.9 73 0.0016 32.6 10.4 43 8-51 216-258 (460)
207 cd00550 ArsA_ATPase Oxyanion-t 61.6 21 0.00045 33.1 6.0 37 8-46 3-39 (254)
208 PF07429 Glyco_transf_56: 4-al 61.6 95 0.0021 30.1 10.2 83 344-434 244-332 (360)
209 cd01423 MGS_CPS_I_III Methylgl 61.0 60 0.0013 25.7 7.8 87 18-142 11-106 (116)
210 PF12146 Hydrolase_4: Putative 60.6 22 0.00047 26.2 4.7 35 5-41 15-49 (79)
211 cd02069 methionine_synthase_B1 60.3 46 0.001 29.9 7.7 40 4-45 87-126 (213)
212 PF01012 ETF: Electron transfe 59.9 29 0.00063 29.6 6.2 99 16-145 10-122 (164)
213 PF00551 Formyl_trans_N: Formy 59.8 43 0.00094 29.1 7.4 42 100-146 68-110 (181)
214 PRK14501 putative bifunctional 59.6 34 0.00074 37.3 8.0 113 348-482 345-464 (726)
215 PF02142 MGS: MGS-like domain 59.5 10 0.00022 29.0 3.0 85 22-142 2-95 (95)
216 PF06506 PrpR_N: Propionate ca 59.5 19 0.00042 31.2 5.1 70 361-435 32-124 (176)
217 PF02310 B12-binding: B12 bind 58.9 23 0.0005 28.2 5.2 37 7-45 2-38 (121)
218 PRK04885 ppnK inorganic polyph 58.7 18 0.0004 33.7 5.0 53 364-436 36-94 (265)
219 COG1066 Sms Predicted ATP-depe 58.5 26 0.00056 34.6 6.0 42 8-52 96-137 (456)
220 PF04464 Glyphos_transf: CDP-G 58.1 21 0.00045 35.2 5.7 115 344-475 251-368 (369)
221 PF04127 DFP: DNA / pantothena 56.1 6.4 0.00014 34.5 1.4 39 5-45 3-53 (185)
222 cd00984 DnaB_C DnaB helicase C 56.1 94 0.002 28.2 9.4 42 8-51 16-58 (242)
223 PF02951 GSH-S_N: Prokaryotic 55.8 21 0.00046 28.7 4.2 38 6-45 1-41 (119)
224 PRK06249 2-dehydropantoate 2-r 55.8 27 0.00059 33.5 5.9 44 1-52 1-44 (313)
225 PRK05636 replicative DNA helic 55.4 91 0.002 32.3 9.8 42 8-51 268-310 (505)
226 PRK05748 replicative DNA helic 54.7 1.2E+02 0.0025 30.9 10.5 43 8-51 206-248 (448)
227 PRK05920 aromatic acid decarbo 54.4 23 0.00049 31.6 4.6 46 4-52 2-47 (204)
228 PRK06749 replicative DNA helic 53.4 73 0.0016 32.2 8.7 42 8-51 189-230 (428)
229 PRK14077 pnk inorganic polypho 53.2 26 0.00055 33.2 5.0 52 365-436 66-121 (287)
230 TIGR00665 DnaB replicative DNA 53.0 1.1E+02 0.0023 31.0 10.0 43 8-51 198-240 (434)
231 PRK12342 hypothetical protein; 52.2 25 0.00055 32.5 4.8 41 101-146 99-145 (254)
232 PF05159 Capsule_synth: Capsul 51.6 76 0.0017 29.6 8.1 43 346-391 184-226 (269)
233 cd07035 TPP_PYR_POX_like Pyrim 51.5 1.4E+02 0.003 24.9 9.0 28 364-391 60-93 (155)
234 PRK07773 replicative DNA helic 51.2 94 0.002 34.8 9.8 44 8-52 220-263 (886)
235 PLN02470 acetolactate synthase 51.1 72 0.0016 33.7 8.7 28 363-390 76-109 (585)
236 PRK06029 3-octaprenyl-4-hydrox 51.0 23 0.00051 31.0 4.1 44 6-52 2-46 (185)
237 COG1484 DnaC DNA replication p 50.6 26 0.00056 32.5 4.6 46 5-52 105-150 (254)
238 PF09314 DUF1972: Domain of un 50.5 1.7E+02 0.0038 25.6 9.5 57 6-67 2-63 (185)
239 PRK07313 phosphopantothenoylcy 50.2 26 0.00056 30.6 4.3 44 6-52 2-45 (182)
240 cd01974 Nitrogenase_MoFe_beta 49.0 1.6E+02 0.0034 29.9 10.3 36 101-144 367-402 (435)
241 PRK07206 hypothetical protein; 48.0 72 0.0016 32.0 7.8 33 5-44 2-34 (416)
242 TIGR01285 nifN nitrogenase mol 47.7 91 0.002 31.6 8.4 87 6-144 312-398 (432)
243 TIGR01283 nifE nitrogenase mol 47.5 1.4E+02 0.003 30.5 9.7 35 101-143 385-419 (456)
244 PRK03359 putative electron tra 46.9 37 0.00081 31.5 5.0 41 101-146 102-148 (256)
245 PRK14098 glycogen synthase; Pr 46.8 34 0.00073 35.3 5.2 40 1-44 1-48 (489)
246 PRK05647 purN phosphoribosylgl 46.2 1.7E+02 0.0037 26.0 8.9 84 6-125 2-89 (200)
247 cd01965 Nitrogenase_MoFe_beta_ 45.9 1.3E+02 0.0029 30.3 9.3 36 101-144 361-396 (428)
248 KOG1250 Threonine/serine dehyd 45.8 3.1E+02 0.0068 27.2 14.8 62 367-436 248-317 (457)
249 cd00561 CobA_CobO_BtuR ATP:cor 45.5 1.9E+02 0.0041 24.6 10.7 33 7-41 4-36 (159)
250 COG0052 RpsB Ribosomal protein 45.4 1.9E+02 0.004 26.6 8.9 31 116-146 156-188 (252)
251 cd02071 MM_CoA_mut_B12_BD meth 45.2 42 0.00092 27.0 4.6 37 7-45 1-37 (122)
252 PRK06988 putative formyltransf 44.8 2E+02 0.0043 27.6 9.8 32 6-44 3-34 (312)
253 KOG2825 Putative arsenite-tran 44.4 52 0.0011 30.2 5.2 126 5-139 18-163 (323)
254 PRK14478 nitrogenase molybdenu 44.1 1.4E+02 0.0031 30.6 9.2 34 102-143 384-417 (475)
255 PRK05234 mgsA methylglyoxal sy 44.1 1.9E+02 0.0041 24.1 9.6 97 5-143 4-112 (142)
256 PRK10964 ADP-heptose:LPS hepto 44.0 76 0.0016 30.5 7.0 135 278-434 178-321 (322)
257 PRK02649 ppnK inorganic polyph 43.8 38 0.00082 32.4 4.7 53 364-436 69-125 (305)
258 PRK05986 cob(I)alamin adenolsy 43.8 2.3E+02 0.005 25.0 11.4 36 5-42 22-57 (191)
259 PRK01911 ppnK inorganic polyph 43.6 43 0.00093 31.8 5.0 52 365-436 66-121 (292)
260 COG2185 Sbm Methylmalonyl-CoA 43.4 49 0.0011 27.5 4.6 40 4-45 11-50 (143)
261 PF05225 HTH_psq: helix-turn-h 43.2 47 0.001 21.3 3.6 27 421-450 1-27 (45)
262 PF01075 Glyco_transf_9: Glyco 43.1 79 0.0017 28.8 6.7 97 277-389 104-208 (247)
263 TIGR02655 circ_KaiC circadian 42.9 48 0.001 34.1 5.6 44 7-52 265-308 (484)
264 PRK05784 phosphoribosylamine-- 42.8 1.6E+02 0.0034 30.4 9.2 34 6-44 1-34 (486)
265 PF09001 DUF1890: Domain of un 42.7 44 0.00095 27.4 4.1 36 17-54 11-46 (139)
266 PRK06732 phosphopantothenate-- 42.5 25 0.00053 32.1 3.1 37 6-44 1-49 (229)
267 cd01980 Chlide_reductase_Y Chl 42.5 1.4E+02 0.003 30.1 8.7 25 117-144 351-375 (416)
268 TIGR02852 spore_dpaB dipicolin 42.3 44 0.00096 29.3 4.5 42 6-49 1-42 (187)
269 KOG3339 Predicted glycosyltran 42.2 57 0.0012 28.3 4.8 24 9-32 41-64 (211)
270 PRK03378 ppnK inorganic polyph 42.1 42 0.00091 31.9 4.7 53 364-436 64-120 (292)
271 PRK04539 ppnK inorganic polyph 42.1 49 0.0011 31.5 5.1 53 364-436 69-125 (296)
272 PRK10916 ADP-heptose:LPS hepto 42.0 1.1E+02 0.0024 29.8 7.9 99 277-389 179-286 (348)
273 TIGR02195 heptsyl_trn_II lipop 41.9 2.9E+02 0.0063 26.5 10.8 99 6-145 175-278 (334)
274 KOG0853 Glycosyltransferase [C 41.8 22 0.00048 36.1 2.9 54 375-436 381-434 (495)
275 TIGR00708 cobA cob(I)alamin ad 41.7 2.3E+02 0.005 24.5 9.8 34 6-41 6-39 (173)
276 PRK09620 hypothetical protein; 41.3 30 0.00066 31.5 3.5 38 5-44 3-52 (229)
277 cd01121 Sms Sms (bacterial rad 40.8 1.5E+02 0.0034 29.2 8.5 41 8-50 85-125 (372)
278 PRK10867 signal recognition pa 40.7 1.4E+02 0.0031 30.1 8.4 41 7-49 102-143 (433)
279 cd06533 Glyco_transf_WecG_TagA 40.3 2.4E+02 0.0052 24.2 9.5 74 228-317 61-134 (171)
280 COG0859 RfaF ADP-heptose:LPS h 40.3 2.7E+02 0.0058 27.0 10.1 100 6-147 176-280 (334)
281 PRK11519 tyrosine kinase; Prov 39.8 3E+02 0.0064 30.1 11.3 38 5-44 525-564 (719)
282 COG2099 CobK Precorrin-6x redu 39.7 2.2E+02 0.0048 26.2 8.5 103 22-144 117-229 (257)
283 PRK06067 flagellar accessory p 39.7 53 0.0012 29.9 4.9 40 7-48 27-66 (234)
284 cd07037 TPP_PYR_MenD Pyrimidin 39.7 55 0.0012 28.0 4.6 27 364-390 61-93 (162)
285 PF03808 Glyco_tran_WecB: Glyc 39.3 2.5E+02 0.0054 24.1 10.9 84 218-317 53-136 (172)
286 TIGR00725 conserved hypothetic 39.3 99 0.0021 26.3 6.1 100 265-391 20-123 (159)
287 PRK12446 undecaprenyldiphospho 39.2 1.6E+02 0.0035 28.8 8.4 33 358-390 86-121 (352)
288 cd01977 Nitrogenase_VFe_alpha 38.9 1.1E+02 0.0023 30.8 7.3 32 104-143 351-382 (415)
289 PRK01185 ppnK inorganic polyph 38.9 50 0.0011 30.9 4.6 53 364-436 53-106 (271)
290 PRK02231 ppnK inorganic polyph 38.8 44 0.00096 31.3 4.2 58 356-435 37-98 (272)
291 COG1797 CobB Cobyrinic acid a, 38.7 1.5E+02 0.0033 29.7 7.9 33 7-41 2-35 (451)
292 TIGR00460 fmt methionyl-tRNA f 38.6 3.1E+02 0.0066 26.3 10.1 32 6-44 1-32 (313)
293 PF02826 2-Hacid_dh_C: D-isome 38.6 2.4E+02 0.0053 24.3 8.7 103 278-430 37-142 (178)
294 PRK03372 ppnK inorganic polyph 38.5 54 0.0012 31.4 4.8 53 364-436 73-129 (306)
295 PRK08155 acetolactate synthase 38.5 2.3E+02 0.0049 29.9 10.0 28 363-390 76-109 (564)
296 COG1759 5-formaminoimidazole-4 38.4 88 0.0019 29.8 5.9 134 266-428 5-152 (361)
297 TIGR01862 N2-ase-Ialpha nitrog 38.4 1.4E+02 0.0031 30.2 8.2 34 102-143 378-411 (443)
298 PRK06395 phosphoribosylamine-- 38.0 1.6E+02 0.0035 29.8 8.4 31 6-43 3-33 (435)
299 PLN02240 UDP-glucose 4-epimera 37.8 48 0.001 32.2 4.6 36 1-42 1-36 (352)
300 cd03466 Nitrogenase_NifN_2 Nit 37.8 85 0.0018 31.7 6.4 36 101-144 362-397 (429)
301 PLN02929 NADH kinase 37.8 60 0.0013 30.9 4.9 65 364-436 65-138 (301)
302 PRK01077 cobyrinic acid a,c-di 37.5 3.1E+02 0.0068 27.9 10.5 36 6-43 4-40 (451)
303 PF01210 NAD_Gly3P_dh_N: NAD-d 37.4 38 0.00082 28.7 3.3 32 7-45 1-32 (157)
304 COG0143 MetG Methionyl-tRNA sy 37.3 58 0.0013 34.0 5.1 40 4-45 3-52 (558)
305 TIGR00173 menD 2-succinyl-5-en 36.7 2.4E+02 0.0052 28.5 9.5 26 364-389 64-95 (432)
306 TIGR00421 ubiX_pad polyprenyl 36.2 47 0.001 29.0 3.7 42 8-52 2-43 (181)
307 COG2910 Putative NADH-flavin r 36.0 45 0.00097 29.1 3.4 33 6-44 1-33 (211)
308 TIGR00347 bioD dethiobiotin sy 36.0 2.6E+02 0.0057 23.5 10.4 28 12-41 5-32 (166)
309 cd01425 RPS2 Ribosomal protein 35.6 1E+02 0.0022 27.1 5.9 33 115-147 126-160 (193)
310 PRK13195 pyrrolidone-carboxyla 35.1 61 0.0013 29.3 4.3 26 6-31 2-29 (222)
311 PRK14075 pnk inorganic polypho 34.9 68 0.0015 29.8 4.8 53 364-436 42-95 (256)
312 PRK03501 ppnK inorganic polyph 34.9 71 0.0015 29.8 4.9 53 365-436 41-98 (264)
313 PF02571 CbiJ: Precorrin-6x re 34.7 2.5E+02 0.0055 25.9 8.5 104 22-144 118-226 (249)
314 TIGR02015 BchY chlorophyllide 34.6 1.8E+02 0.004 29.3 8.1 32 6-44 286-317 (422)
315 COG0801 FolK 7,8-dihydro-6-hyd 34.5 86 0.0019 26.7 4.8 29 280-308 3-31 (160)
316 PRK07710 acetolactate synthase 34.4 1.9E+02 0.0041 30.5 8.6 28 363-390 78-111 (571)
317 TIGR03880 KaiC_arch_3 KaiC dom 34.3 1.2E+02 0.0026 27.2 6.4 44 7-52 18-61 (224)
318 TIGR02113 coaC_strep phosphopa 34.3 59 0.0013 28.3 4.0 43 6-51 1-43 (177)
319 TIGR02482 PFKA_ATP 6-phosphofr 34.2 38 0.00082 32.3 3.0 37 358-394 86-126 (301)
320 PRK11199 tyrA bifunctional cho 34.2 2.4E+02 0.0052 27.9 8.8 32 5-43 98-130 (374)
321 TIGR00416 sms DNA repair prote 33.8 1.3E+02 0.0028 30.7 7.0 42 8-51 97-138 (454)
322 cd01124 KaiC KaiC is a circadi 33.4 86 0.0019 27.0 5.1 42 8-51 2-43 (187)
323 PRK13982 bifunctional SbtC-lik 33.4 40 0.00087 34.4 3.2 37 6-44 257-305 (475)
324 COG2874 FlaH Predicted ATPases 33.3 1.2E+02 0.0027 27.2 5.7 37 14-52 37-74 (235)
325 PRK01231 ppnK inorganic polyph 33.2 84 0.0018 29.9 5.2 52 365-436 64-119 (295)
326 cd08783 Death_MALT1 Death doma 33.2 1.5E+02 0.0033 22.6 5.3 65 393-481 20-84 (97)
327 PRK13196 pyrrolidone-carboxyla 33.2 77 0.0017 28.5 4.6 26 6-31 2-29 (211)
328 PF01470 Peptidase_C15: Pyrogl 33.0 55 0.0012 29.1 3.7 26 6-31 1-28 (202)
329 PRK05579 bifunctional phosphop 32.7 75 0.0016 31.7 5.0 46 4-52 5-50 (399)
330 cd07025 Peptidase_S66 LD-Carbo 32.5 90 0.002 29.5 5.3 27 291-317 46-72 (282)
331 cd03818 GT1_ExpC_like This fam 32.5 2.5E+02 0.0054 27.7 8.8 26 292-317 9-34 (396)
332 TIGR03878 thermo_KaiC_2 KaiC d 32.5 4.1E+02 0.0089 24.6 12.2 36 8-45 39-74 (259)
333 PF07355 GRDB: Glycine/sarcosi 32.4 76 0.0017 30.7 4.7 47 92-143 61-117 (349)
334 PRK11823 DNA repair protein Ra 32.2 1.2E+02 0.0026 30.9 6.4 41 8-50 83-123 (446)
335 PRK08322 acetolactate synthase 32.1 1.2E+02 0.0025 31.9 6.6 27 364-390 64-96 (547)
336 PF00282 Pyridoxal_deC: Pyrido 32.0 1E+02 0.0022 30.6 5.7 70 364-435 104-191 (373)
337 PRK07525 sulfoacetaldehyde ace 31.9 2.7E+02 0.0058 29.5 9.3 28 363-390 68-101 (588)
338 PLN02935 Bifunctional NADH kin 31.8 81 0.0018 32.3 5.0 52 364-436 263-319 (508)
339 PF00731 AIRC: AIR carboxylase 31.5 3.2E+02 0.0069 23.0 10.0 137 280-455 2-148 (150)
340 COG3660 Predicted nucleoside-d 31.4 4.4E+02 0.0096 24.6 18.0 38 351-389 234-271 (329)
341 cd01968 Nitrogenase_NifE_I Nit 31.2 3.3E+02 0.0071 27.3 9.4 34 102-143 347-380 (410)
342 COG3245 CycB Cytochrome c5 [En 31.1 35 0.00076 27.0 1.8 52 380-433 60-122 (126)
343 PRK01372 ddl D-alanine--D-alan 30.9 4.2E+02 0.009 25.0 9.8 40 3-44 2-45 (304)
344 PRK13768 GTPase; Provisional 30.9 1.5E+02 0.0032 27.4 6.4 37 6-44 3-39 (253)
345 PF06180 CbiK: Cobalt chelatas 30.8 72 0.0016 29.7 4.2 39 279-317 2-43 (262)
346 COG1422 Predicted membrane pro 30.6 1.5E+02 0.0032 26.1 5.7 85 375-480 24-109 (201)
347 TIGR00877 purD phosphoribosyla 30.5 2.5E+02 0.0054 28.2 8.5 34 6-46 1-34 (423)
348 cd03412 CbiK_N Anaerobic cobal 30.3 96 0.0021 25.2 4.4 37 279-315 2-40 (127)
349 PRK12311 rpsB 30S ribosomal pr 30.2 2.8E+02 0.0061 26.8 8.1 33 115-147 151-185 (326)
350 COG0287 TyrA Prephenate dehydr 30.0 1E+02 0.0022 29.0 5.1 41 5-52 3-43 (279)
351 COG2039 Pcp Pyrrolidone-carbox 29.9 1.7E+02 0.0036 25.7 5.8 25 7-31 2-28 (207)
352 PRK08229 2-dehydropantoate 2-r 29.9 59 0.0013 31.5 3.7 40 6-52 3-42 (341)
353 CHL00076 chlB photochlorophyll 29.7 75 0.0016 33.0 4.5 35 102-144 365-399 (513)
354 TIGR02700 flavo_MJ0208 archaeo 29.6 77 0.0017 28.9 4.2 36 15-52 8-46 (234)
355 COG3195 Uncharacterized protei 29.5 2.6E+02 0.0056 23.9 6.7 76 374-454 88-164 (176)
356 PRK00784 cobyric acid synthase 29.5 4.9E+02 0.011 26.8 10.4 36 6-43 3-39 (488)
357 COG1663 LpxK Tetraacyldisaccha 29.3 1.5E+02 0.0032 28.7 6.0 31 12-44 56-86 (336)
358 TIGR01501 MthylAspMutase methy 29.3 1.2E+02 0.0027 24.9 4.9 40 5-46 1-40 (134)
359 PRK14076 pnk inorganic polypho 29.3 80 0.0017 33.3 4.7 53 364-436 349-405 (569)
360 PRK03708 ppnK inorganic polyph 29.3 74 0.0016 29.9 4.1 53 364-436 58-113 (277)
361 TIGR00959 ffh signal recogniti 29.0 3.2E+02 0.0069 27.7 8.7 41 7-49 101-142 (428)
362 PRK14477 bifunctional nitrogen 28.9 3.7E+02 0.0079 30.4 10.0 36 101-144 379-414 (917)
363 cd00861 ProRS_anticodon_short 28.9 1.3E+02 0.0029 22.3 4.9 59 5-67 1-62 (94)
364 PF01695 IstB_IS21: IstB-like 28.3 81 0.0018 27.4 3.9 46 5-52 47-92 (178)
365 TIGR02699 archaeo_AfpA archaeo 28.3 87 0.0019 27.1 4.0 35 17-52 10-45 (174)
366 PF02374 ArsA_ATPase: Anion-tr 28.1 76 0.0016 30.4 4.0 41 7-49 2-43 (305)
367 PRK02910 light-independent pro 27.8 93 0.002 32.4 4.9 35 102-144 353-387 (519)
368 PRK13197 pyrrolidone-carboxyla 27.8 1.1E+02 0.0025 27.5 4.8 26 6-31 2-29 (215)
369 KOG1111 N-acetylglucosaminyltr 27.6 6E+02 0.013 25.0 11.8 44 344-389 251-301 (426)
370 TIGR01278 DPOR_BchB light-inde 27.6 91 0.002 32.4 4.7 36 102-145 355-390 (511)
371 PRK11269 glyoxylate carboligas 27.6 3.1E+02 0.0068 29.0 8.9 27 364-390 69-101 (591)
372 cd01421 IMPCH Inosine monophos 27.5 2.6E+02 0.0056 24.5 6.7 38 20-66 11-48 (187)
373 PRK05632 phosphate acetyltrans 27.4 5E+02 0.011 28.2 10.4 35 6-42 3-38 (684)
374 PF02585 PIG-L: GlcNAc-PI de-N 27.4 3.1E+02 0.0067 21.9 7.1 22 97-123 86-107 (128)
375 PF01372 Melittin: Melittin; 27.2 10 0.00022 20.6 -1.2 17 372-388 1-17 (26)
376 PRK00039 ruvC Holliday junctio 27.2 1.7E+02 0.0037 25.0 5.6 48 95-147 45-107 (164)
377 cd02065 B12-binding_like B12 b 27.1 1.2E+02 0.0026 24.0 4.6 36 8-45 2-37 (125)
378 cd00763 Bacterial_PFK Phosphof 27.0 57 0.0012 31.4 2.9 37 358-394 87-126 (317)
379 PRK13193 pyrrolidone-carboxyla 26.9 1.5E+02 0.0032 26.6 5.3 26 6-31 1-28 (209)
380 TIGR02483 PFK_mixed phosphofru 26.7 59 0.0013 31.4 3.0 37 358-394 89-128 (324)
381 PRK13194 pyrrolidone-carboxyla 26.7 1.3E+02 0.0029 26.9 5.0 26 6-31 1-28 (208)
382 cd07062 Peptidase_S66_mccF_lik 26.6 1.1E+02 0.0025 29.2 4.9 26 292-317 51-76 (308)
383 COG2109 BtuR ATP:corrinoid ade 26.6 4.5E+02 0.0097 23.2 9.6 34 7-42 30-63 (198)
384 PRK13011 formyltetrahydrofolat 26.0 4E+02 0.0086 25.2 8.4 58 367-431 198-257 (286)
385 PRK07819 3-hydroxybutyryl-CoA 25.8 87 0.0019 29.6 4.0 37 1-44 1-37 (286)
386 TIGR00521 coaBC_dfp phosphopan 25.8 99 0.0021 30.8 4.4 45 5-52 3-47 (390)
387 TIGR00345 arsA arsenite-activa 25.6 2.7E+02 0.0059 26.2 7.3 24 23-48 3-26 (284)
388 PRK14619 NAD(P)H-dependent gly 25.5 81 0.0018 30.1 3.8 34 4-44 3-36 (308)
389 cd01981 Pchlide_reductase_B Pc 25.4 1.1E+02 0.0024 30.9 4.9 35 103-145 362-396 (430)
390 COG1748 LYS9 Saccharopine dehy 25.4 5.2E+02 0.011 25.7 9.2 53 5-66 1-55 (389)
391 TIGR03590 PseG pseudaminic aci 24.8 5.8E+02 0.013 23.8 10.8 39 6-45 171-209 (279)
392 TIGR00750 lao LAO/AO transport 24.7 2.7E+02 0.0059 26.4 7.2 39 5-45 34-72 (300)
393 COG2230 Cfa Cyclopropane fatty 24.6 31 0.00066 32.4 0.6 40 370-409 80-121 (283)
394 PRK14071 6-phosphofructokinase 24.6 66 0.0014 31.6 2.9 38 357-394 101-142 (360)
395 TIGR01861 ANFD nitrogenase iro 24.6 3.8E+02 0.0082 27.9 8.5 31 105-143 392-422 (513)
396 COG0299 PurN Folate-dependent 24.5 5E+02 0.011 23.0 8.8 70 295-391 67-136 (200)
397 COG1763 MobB Molybdopterin-gua 24.2 1.9E+02 0.0041 24.7 5.2 37 6-44 3-39 (161)
398 PF04244 DPRP: Deoxyribodipyri 24.2 90 0.0019 28.3 3.5 25 18-44 47-71 (224)
399 PRK05703 flhF flagellar biosyn 24.0 4.1E+02 0.0089 26.8 8.5 39 7-47 223-263 (424)
400 COG2099 CobK Precorrin-6x redu 23.9 1.2E+02 0.0026 27.9 4.2 39 101-144 56-100 (257)
401 PRK03202 6-phosphofructokinase 23.9 68 0.0015 30.9 2.8 37 358-394 88-127 (320)
402 TIGR00696 wecB_tagA_cpsF bacte 23.8 4.8E+02 0.01 22.6 8.4 83 218-317 53-135 (177)
403 cd01976 Nitrogenase_MoFe_alpha 23.7 94 0.002 31.3 3.9 36 101-144 359-394 (421)
404 PRK10637 cysG siroheme synthas 23.7 6.9E+02 0.015 25.5 10.2 147 278-457 13-169 (457)
405 PRK13010 purU formyltetrahydro 23.6 5.4E+02 0.012 24.4 8.7 55 371-432 206-262 (289)
406 PF01591 6PF2K: 6-phosphofruct 23.6 4.8E+02 0.01 23.6 8.0 46 5-52 12-57 (222)
407 PF08766 DEK_C: DEK C terminal 23.6 2.3E+02 0.005 18.8 6.3 50 421-477 1-51 (54)
408 PLN02880 tyrosine decarboxylas 23.5 1.5E+02 0.0033 30.5 5.5 69 365-433 148-234 (490)
409 PRK06276 acetolactate synthase 23.5 7.3E+02 0.016 26.2 10.8 59 367-434 470-531 (586)
410 PRK14476 nitrogenase molybdenu 23.5 3.4E+02 0.0074 27.7 8.0 25 117-144 372-396 (455)
411 PRK06270 homoserine dehydrogen 23.5 5E+02 0.011 25.2 8.9 59 354-413 80-150 (341)
412 PRK12921 2-dehydropantoate 2-r 23.4 1.2E+02 0.0026 28.8 4.5 40 6-52 1-40 (305)
413 PRK00885 phosphoribosylamine-- 23.2 1.9E+02 0.0042 29.0 6.1 29 6-41 1-30 (420)
414 cd01840 SGNH_hydrolase_yrhL_li 23.2 2.2E+02 0.0047 23.6 5.6 38 277-315 50-87 (150)
415 PF14626 RNase_Zc3h12a_2: Zc3h 23.2 92 0.002 24.8 2.9 32 19-52 9-40 (122)
416 PRK06522 2-dehydropantoate 2-r 23.2 1.1E+02 0.0025 28.8 4.3 40 6-52 1-41 (304)
417 cd01141 TroA_d Periplasmic bin 23.1 1.1E+02 0.0023 26.5 3.8 28 117-144 70-99 (186)
418 TIGR01286 nifK nitrogenase mol 23.1 1.2E+02 0.0025 31.6 4.5 35 102-144 428-462 (515)
419 PF01075 Glyco_transf_9: Glyco 22.8 2.6E+02 0.0057 25.3 6.5 100 5-147 105-212 (247)
420 PF03446 NAD_binding_2: NAD bi 22.8 83 0.0018 26.7 2.9 31 5-42 1-31 (163)
421 TIGR01918 various_sel_PB selen 22.5 1.4E+02 0.003 29.8 4.5 47 92-143 57-113 (431)
422 TIGR01917 gly_red_sel_B glycin 22.4 1.4E+02 0.003 29.8 4.5 47 92-143 57-113 (431)
423 PF00982 Glyco_transf_20: Glyc 22.4 3.8E+02 0.0083 27.5 8.0 107 349-479 357-473 (474)
424 PF00391 PEP-utilizers: PEP-ut 22.4 1.4E+02 0.003 21.8 3.7 28 117-144 31-60 (80)
425 PF09334 tRNA-synt_1g: tRNA sy 22.2 73 0.0016 31.7 2.8 29 14-44 14-45 (391)
426 KOG0780 Signal recognition par 22.1 1.4E+02 0.0031 29.4 4.5 40 6-47 102-141 (483)
427 PRK08199 thiamine pyrophosphat 22.1 6.6E+02 0.014 26.3 10.0 27 364-390 72-104 (557)
428 PRK08125 bifunctional UDP-gluc 22.0 6E+02 0.013 27.4 9.9 41 102-147 66-107 (660)
429 PF08323 Glyco_transf_5: Starc 21.9 69 0.0015 29.5 2.4 23 21-45 21-43 (245)
430 KOG0023 Alcohol dehydrogenase, 21.7 1.8E+02 0.0038 28.0 4.9 44 5-55 182-227 (360)
431 PRK13604 luxD acyl transferase 21.7 1.5E+02 0.0033 28.3 4.7 35 5-41 36-70 (307)
432 TIGR01369 CPSaseII_lrg carbamo 21.6 4.7E+02 0.01 30.1 9.3 38 5-44 554-597 (1050)
433 PRK06555 pyrophosphate--fructo 21.4 78 0.0017 31.5 2.7 38 357-394 106-152 (403)
434 COG0503 Apt Adenine/guanine ph 21.2 1.9E+02 0.0041 25.1 4.9 27 117-143 54-82 (179)
435 PF02702 KdpD: Osmosensitive K 21.2 1.7E+02 0.0036 26.1 4.4 38 5-44 5-42 (211)
436 PRK08163 salicylate hydroxylas 21.1 1.1E+02 0.0025 30.2 4.0 34 1-42 1-34 (396)
437 TIGR01761 thiaz-red thiazoliny 21.0 6E+02 0.013 24.8 8.7 62 351-412 52-120 (343)
438 PF07015 VirC1: VirC1 protein; 20.9 2.3E+02 0.0049 25.8 5.3 44 7-52 3-47 (231)
439 TIGR02201 heptsyl_trn_III lipo 20.8 7.6E+02 0.016 23.7 10.9 27 117-145 261-287 (344)
440 PLN02735 carbamoyl-phosphate s 20.7 5.6E+02 0.012 29.7 9.6 39 5-45 23-67 (1102)
441 PF01497 Peripla_BP_2: Peripla 20.7 1.5E+02 0.0032 26.6 4.4 37 106-147 55-93 (238)
442 PRK12815 carB carbamoyl phosph 20.7 7.5E+02 0.016 28.6 10.6 39 5-45 7-51 (1068)
443 COG0223 Fmt Methionyl-tRNA for 20.6 1.8E+02 0.0038 27.9 4.8 33 5-44 1-33 (307)
444 PRK06276 acetolactate synthase 20.4 1.4E+02 0.003 31.6 4.6 27 364-390 64-96 (586)
445 PF05728 UPF0227: Uncharacteri 20.3 2.1E+02 0.0045 25.1 4.9 44 101-147 47-91 (187)
446 PRK09107 acetolactate synthase 20.3 1E+03 0.022 25.2 11.0 60 367-434 481-542 (595)
447 PF00289 CPSase_L_chain: Carba 20.2 2.7E+02 0.0057 22.0 5.1 73 292-381 10-90 (110)
448 PRK12815 carB carbamoyl phosph 20.2 4.5E+02 0.0098 30.3 8.8 39 4-44 554-598 (1068)
449 PRK14569 D-alanyl-alanine synt 20.2 1.9E+02 0.0041 27.4 5.1 37 4-42 2-42 (296)
450 PRK04940 hypothetical protein; 20.1 3E+02 0.0064 24.0 5.7 31 117-147 61-92 (180)
451 PRK00923 sirohydrochlorin coba 20.1 4.6E+02 0.0099 20.9 7.7 36 278-313 2-39 (126)
452 PLN02939 transferase, transfer 20.1 1.8E+02 0.0038 32.7 5.2 40 4-45 480-525 (977)
453 PF02776 TPP_enzyme_N: Thiamin 20.1 3.5E+02 0.0075 23.1 6.3 28 364-391 65-98 (172)
454 PF03308 ArgK: ArgK protein; 20.1 1.9E+02 0.0042 26.8 4.8 122 6-146 30-153 (266)
No 1
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.2e-67 Score=527.48 Aligned_cols=456 Identities=35% Similarity=0.610 Sum_probs=359.9
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDV 83 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~ 83 (493)
+++||+++|+|++||++|+++||+.|+. +|+.|||++++.+...+........+++++.++++ ..+++|++.+...+
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~--~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P-~~~~lPdG~~~~~~ 84 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLAL--RGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFP-SHPSIPSGVENVKD 84 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHh--CCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCC-CcCCCCCCCcChhh
Confidence 4789999999999999999999999999 99999999999887776653211146888888876 45688888765544
Q ss_pred CChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhcccCCC
Q 011106 84 LPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTNLPH 163 (493)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~p~ 163 (493)
.+......+..+...+.+.+.+++++.. .+|++||+|.+..|+..+|+++|||++.|++++++.++.++++....+.
T Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~---~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~ 161 (477)
T PLN02863 85 LPPSGFPLMIHALGELYAPLLSWFRSHP---SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPT 161 (477)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHhCC---CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcccc
Confidence 4433445566666777788888887642 3589999999999999999999999999999999999988876654443
Q ss_pred CCC--C-CCcc---cCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhc
Q 011106 164 NKV--T-SDEF---VLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKL 237 (493)
Q Consensus 164 ~~~--~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~ 237 (493)
... . .+.. .+|+++. ++..+++.++......+.....+.+.......+.++++|||.+||+.+++.++..+
T Consensus 162 ~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~ 238 (477)
T PLN02863 162 KINPDDQNEILSFSKIPNCPK---YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKEL 238 (477)
T ss_pred cccccccccccccCCCCCCCC---cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhc
Confidence 211 1 1112 3566665 88888887664332222333344344444456778999999999999999998876
Q ss_pred C-Cceeecccccccccccc---ccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEE
Q 011106 238 G-LSVWPVGPILLSLENRA---NAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWV 313 (493)
Q Consensus 238 ~-~~~~~vGpl~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~ 313 (493)
+ ++++.|||++....... ..+...+..++++..||+.+++++||||||||+...+.+++.+++.+|+.++++|||+
T Consensus 239 ~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~ 318 (477)
T PLN02863 239 GHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWC 318 (477)
T ss_pred CCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEE
Confidence 5 67999999975331100 0011111235689999999988899999999999999999999999999999999999
Q ss_pred EcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccccc
Q 011106 314 VRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAA 393 (493)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~ 393 (493)
++... ..+... ..+|.+|.+++. +.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 319 ~~~~~----~~~~~~-~~lp~~~~~r~~--~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~ 391 (477)
T PLN02863 319 VKEPV----NEESDY-SNIPSGFEDRVA--GRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAA 391 (477)
T ss_pred ECCCc----ccccch-hhCCHHHHHHhc--cCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccc
Confidence 97532 000011 238899988888 88999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHH
Q 011106 394 EQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDD 473 (493)
Q Consensus 394 DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~ 473 (493)
||+.||+++++.||+|+++..++....+.++|.++|+++|. +++.||+||+++++.+++|+ .+||||.+++++
T Consensus 392 DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~---~~~~~r~~a~~l~e~a~~Av----~~gGSS~~~l~~ 464 (477)
T PLN02863 392 DQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVS---ENQVERERAKELRRAALDAI----KERGSSVKDLDG 464 (477)
T ss_pred cchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHh----ccCCcHHHHHHH
Confidence 99999999887889999996422234689999999999994 23389999999999999999 999999999999
Q ss_pred HHHHHHhhc
Q 011106 474 FLSAAISMK 482 (493)
Q Consensus 474 ~~~~~~~~~ 482 (493)
|++++++.-
T Consensus 465 ~v~~i~~~~ 473 (477)
T PLN02863 465 FVKHVVELG 473 (477)
T ss_pred HHHHHHHhc
Confidence 999998653
No 2
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.2e-66 Score=519.02 Aligned_cols=460 Identities=31% Similarity=0.568 Sum_probs=354.8
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCC----CCceEEeccCCCCCCCCCCCCC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPN----SSIDLHEIPFNSSSHGLPPNSE 79 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~----~~i~~~~i~~~~~~~~l~~~~~ 79 (493)
.+.||+++|+|++||++|+++||+.|.. +|+.|||++++.+...+.....+. ..|+|+.+|++...|++|++.+
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~--~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~ 84 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAE--RGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCE 84 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHh--CCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcc
Confidence 3579999999999999999999999999 999999999998766554422100 2489999998865678887765
Q ss_pred CCCCCCh-hhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhc
Q 011106 80 NCDVLPY-NLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFW 158 (493)
Q Consensus 80 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~ 158 (493)
...+.+. ..+..+...+..+.+.+.++|++. +.+|++||+|.+..|+..+|+.+|||++.|++++++....+++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~---~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~ 161 (491)
T PLN02534 85 NLDTLPSRDLLRKFYDAVDKLQQPLERFLEQA---KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIR 161 (491)
T ss_pred ccccCCcHHHHHHHHHHHHHhHHHHHHHHHhc---CCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHH
Confidence 5444333 334455666667778888888754 235899999999999999999999999999999988877655433
Q ss_pred ccCCCCC--CCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHh
Q 011106 159 TNLPHNK--VTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRK 236 (493)
Q Consensus 159 ~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~ 236 (493)
...+... .....+.+|+++....++..+++.++... .....+..........++++++|||.+||+.+++.++..
T Consensus 162 ~~~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~---~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~ 238 (491)
T PLN02534 162 LHNAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSL---PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKA 238 (491)
T ss_pred HhcccccCCCCCceeecCCCCccccccHHHCChhhcCc---ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhh
Confidence 3332211 11223557888755557777777654221 112222222222233567899999999999999999887
Q ss_pred cCCceeecccccccccc--ccc-cCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEE
Q 011106 237 LGLSVWPVGPILLSLEN--RAN-AGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWV 313 (493)
Q Consensus 237 ~~~~~~~vGpl~~~~~~--~~~-~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~ 313 (493)
++++++.|||+...... +.. .........+++..|||++++++||||||||.....++++.+++.+|+.++++|||+
T Consensus 239 ~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~ 318 (491)
T PLN02534 239 IKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWV 318 (491)
T ss_pred cCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 77789999999753210 000 000011123579999999988999999999999999999999999999999999999
Q ss_pred EcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccccc
Q 011106 314 VRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAA 393 (493)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~ 393 (493)
++.+.. ..+... ..+|++|.+++. +.++++.+|+||.+||+|++++||||||||||++||+++|||||++|++.
T Consensus 319 ~r~~~~---~~~~~~-~~~p~gf~~~~~--~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~ 392 (491)
T PLN02534 319 IKTGEK---HSELEE-WLVKENFEERIK--GRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFA 392 (491)
T ss_pred EecCcc---ccchhh-hcCchhhHHhhc--cCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccc
Confidence 984310 001111 236899988877 88999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHhhhhceeEEeec------CC-C--C-ccCHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHhhhcccc
Q 011106 394 EQFFNAKFLEQEMGVCVEVAR------GK-T--C-EVKHEDVVAKIELVMNE-TDKGKEIRRKVSEVREMIKNAMKDEEG 462 (493)
Q Consensus 394 DQ~~na~~v~~~lG~G~~~~~------~~-~--~-~~~~~~l~~ai~~~l~~-~~~~~~~~~~a~~l~~~~~~~~~~~~~ 462 (493)
||+.||+++++.||+|+++.. +. + . .++.++|+++|+++|.+ .++|+.+|+||++|++.+++|+ .
T Consensus 393 dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av----~ 468 (491)
T PLN02534 393 EQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAM----E 468 (491)
T ss_pred cHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHh----c
Confidence 999999999999999998852 11 1 1 38999999999999973 3378899999999999999999 9
Q ss_pred CCCChHHHHHHHHHHHHhh
Q 011106 463 CRGSSVKAMDDFLSAAISM 481 (493)
Q Consensus 463 ~~g~~~~~~~~~~~~~~~~ 481 (493)
+||||.+++++|++.+++.
T Consensus 469 ~GGSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 469 LGGSSHINLSILIQDVLKQ 487 (491)
T ss_pred CCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999754
No 3
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.7e-66 Score=513.06 Aligned_cols=436 Identities=26% Similarity=0.432 Sum_probs=342.4
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCC-C
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNS-E 79 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~-~ 79 (493)
|+.++.||+++|+|++||++|+++||+.|+. +|+.|||++++.+...+..... .+|+++.++ +++|++. +
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~--~G~~vT~v~t~~~~~~~~~~~~--~~i~~~~ip-----dglp~~~~~ 71 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHS--KGFKTTHTLTTFIFNTIHLDPS--SPISIATIS-----DGYDQGGFS 71 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHc--CCCEEEEEECCchhhhcccCCC--CCEEEEEcC-----CCCCCcccc
Confidence 6766779999999999999999999999999 9999999999987655533222 468999987 5777632 2
Q ss_pred CCCCCChhhHHHHHHHH-hhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhc
Q 011106 80 NCDVLPYNLVIHLLRAS-TSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFW 158 (493)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~ 158 (493)
.. +. ...+...+ ..+.+.++++|++...+.+++++||+|.+..|+..+|+.+|||++.|++++++.+..+++..
T Consensus 72 ~~-~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~ 146 (449)
T PLN02173 72 SA-GS----VPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSY 146 (449)
T ss_pred cc-cC----HHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHH
Confidence 21 11 12333333 46778888888876432233499999999999999999999999999999888776555321
Q ss_pred ccCCCCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhcC
Q 011106 159 TNLPHNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKLG 238 (493)
Q Consensus 159 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 238 (493)
.. .......+|++|. ++..+++.++............+.+......+++++++|||.+||+.+++.++..
T Consensus 147 ~~-----~~~~~~~~pg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~-- 216 (449)
T PLN02173 147 IN-----NGSLTLPIKDLPL---LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV-- 216 (449)
T ss_pred hc-----cCCccCCCCCCCC---CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc--
Confidence 11 0112245778876 7788888766433222233343444455667888999999999999999998653
Q ss_pred Cceeeccccccccc--cc--c-ccCC-CCC--CChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcE
Q 011106 239 LSVWPVGPILLSLE--NR--A-NAGK-EGG--TSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNF 310 (493)
Q Consensus 239 ~~~~~vGpl~~~~~--~~--~-~~~~-~~~--~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~v 310 (493)
++++.|||++.... .. . .... ..+ ...+++.+||++++++++|||||||+...+.+++.+++.+| ++.+|
T Consensus 217 ~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~f 294 (449)
T PLN02173 217 CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSY 294 (449)
T ss_pred CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCE
Confidence 36999999974310 00 0 0000 011 23456999999998889999999999999999999999999 78889
Q ss_pred EEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEeccc
Q 011106 311 IWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWP 390 (493)
Q Consensus 311 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P 390 (493)
||++.... . ..+|+++.+++. ++|+++++|+||.+||+|++|++|||||||||++||+++|||||++|
T Consensus 295 lWvvr~~~-------~---~~lp~~~~~~~~--~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P 362 (449)
T PLN02173 295 LWVVRASE-------E---SKLPPGFLETVD--KDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMP 362 (449)
T ss_pred EEEEeccc-------h---hcccchHHHhhc--CCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecC
Confidence 99997431 1 238888888876 78899999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHhhhhceeEEeecCC-CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHH
Q 011106 391 MAAEQFFNAKFLEQEMGVCVEVARGK-TCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVK 469 (493)
Q Consensus 391 ~~~DQ~~na~~v~~~lG~G~~~~~~~-~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~ 469 (493)
++.||+.||+++++.||+|+.+..++ +..++.++|+++|+++|.++ +|+.+|+||+++++.+++|+ .+||||.+
T Consensus 363 ~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~-~~~~~r~~a~~~~~~a~~Av----~~gGSS~~ 437 (449)
T PLN02173 363 QWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGE-KSKEMKENAGKWRDLAVKSL----SEGGSTDI 437 (449)
T ss_pred chhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHh----cCCCcHHH
Confidence 99999999999999889999997521 12479999999999999886 78899999999999999999 99999999
Q ss_pred HHHHHHHHHH
Q 011106 470 AMDDFLSAAI 479 (493)
Q Consensus 470 ~~~~~~~~~~ 479 (493)
++++|++++.
T Consensus 438 ~l~~~v~~~~ 447 (449)
T PLN02173 438 NINTFVSKIQ 447 (449)
T ss_pred HHHHHHHHhc
Confidence 9999999874
No 4
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=4.3e-66 Score=512.53 Aligned_cols=456 Identities=28% Similarity=0.446 Sum_probs=346.8
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCC-CCceEEeccCCCCCCCCCCCCCCCC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPN-SSIDLHEIPFNSSSHGLPPNSENCD 82 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~-~~i~~~~i~~~~~~~~l~~~~~~~~ 82 (493)
.+.||+++|+|++||++|+++||+.|.. +|+.|||++++.+...+.+..... .+|+++.+|++ ..+++|++.+...
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~--~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p-~~dglp~~~~~~~ 81 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQ--KGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLP-SVPGLPSSAESST 81 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHh--CCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCC-ccCCCCCCccccc
Confidence 4569999999999999999999999999 999999999998876665421111 46899999987 3467887655433
Q ss_pred CCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhcccCC
Q 011106 83 VLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTNLP 162 (493)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~p 162 (493)
+.+......+....+.+.+.+++++++.. +++||+|.+..|+..+|+++|||++.|++++++.++.++++.....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~ 156 (472)
T PLN02670 82 DVPYTKQQLLKKAFDLLEPPLTTFLETSK-----PDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLME 156 (472)
T ss_pred ccchhhHHHHHHHHHHhHHHHHHHHHhCC-----CcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhh
Confidence 33321123444556677888888888765 9999999999999999999999999999999888877654321111
Q ss_pred C--CCCCCCc-ccCCCCCc---ccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHh
Q 011106 163 H--NKVTSDE-FVLPDFEE---ASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRK 236 (493)
Q Consensus 163 ~--~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~ 236 (493)
. .....+. ..+|+..+ .+.++..+++.+.............+.+......+++++++|||.+||+.+++.++..
T Consensus 157 ~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~ 236 (472)
T PLN02670 157 GGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDL 236 (472)
T ss_pred cccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHh
Confidence 1 0111111 12444321 1235666777665432212122222333334456788999999999999999999886
Q ss_pred cCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcC
Q 011106 237 LGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRP 316 (493)
Q Consensus 237 ~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~ 316 (493)
++++++.|||+..................+++.+|||++++++||||||||+..++.+++.+++.+|+.++++|||++..
T Consensus 237 ~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~ 316 (472)
T PLN02670 237 YRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRN 316 (472)
T ss_pred hCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcC
Confidence 66789999999753110000000000123679999999988899999999999999999999999999999999999985
Q ss_pred CCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccch
Q 011106 317 PIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQF 396 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~ 396 (493)
... .+.+....+|++|.++++ ..++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+
T Consensus 317 ~~~----~~~~~~~~lp~~f~~~~~--~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~ 390 (472)
T PLN02670 317 EPG----TTQNALEMLPDGFEERVK--GRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQG 390 (472)
T ss_pred Ccc----cccchhhcCChHHHHhcc--CCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccH
Confidence 320 001100248999999988 88899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhceeEEeecCC-CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHH
Q 011106 397 FNAKFLEQEMGVCVEVARGK-TCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFL 475 (493)
Q Consensus 397 ~na~~v~~~lG~G~~~~~~~-~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~ 475 (493)
.||+++++ +|+|+.+...+ +..++.++|+++|+++|.++ +|++||+||+++++.++ ..++ ..++++.|+
T Consensus 391 ~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~-~g~~~r~~a~~l~~~~~-------~~~~-~~~~~~~~~ 460 (472)
T PLN02670 391 LNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDD-AGEEIRDKAKEMRNLFG-------DMDR-NNRYVDELV 460 (472)
T ss_pred HHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHh-------Ccch-hHHHHHHHH
Confidence 99999985 59999997521 23589999999999999886 78899999999999997 5555 789999999
Q ss_pred HHHHhhcc
Q 011106 476 SAAISMKN 483 (493)
Q Consensus 476 ~~~~~~~~ 483 (493)
+.++++++
T Consensus 461 ~~l~~~~~ 468 (472)
T PLN02670 461 HYLRENRS 468 (472)
T ss_pred HHHHHhcc
Confidence 99999883
No 5
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=2.4e-66 Score=513.32 Aligned_cols=438 Identities=24% Similarity=0.360 Sum_probs=341.9
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCC
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSEN 80 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~ 80 (493)
|+ .++||+++|+|++||++|+++||+.|+. +||+|||++++.+...+.+.+.....+.+..++.+ ..+++|++.+.
T Consensus 1 ~~-~~~hvv~~P~paqGHi~P~l~LAk~La~--~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p-~~dgLp~g~~~ 76 (442)
T PLN02208 1 ME-PKFHAFMFPWFAFGHMIPFLHLANKLAE--KGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIP-PVNGLPAGAET 76 (442)
T ss_pred CC-CCCEEEEecCccccHHHHHHHHHHHHHh--CCCEEEEEeccchhhhhhcccCCCCceEEEEeCCC-CccCCCCCccc
Confidence 56 6789999999999999999999999999 99999999999887777664421135677777654 23577776543
Q ss_pred CCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhccc
Q 011106 81 CDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTN 160 (493)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~ 160 (493)
..+........+....+.+.+.+++++++.. +|+||+| ++.|+..+|+.+|||++.|++++++.+. +++...
T Consensus 77 ~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~~-----~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~- 148 (442)
T PLN02208 77 TSDIPISMDNLLSEALDLTRDQVEAAVRALR-----PDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG- 148 (442)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhCC-----CeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc-
Confidence 3232222234456666788888888888765 9999999 5789999999999999999999987654 333221
Q ss_pred CCCCCCCCCcccCCCCCcc-cccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhcCC
Q 011106 161 LPHNKVTSDEFVLPDFEEA-SRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKLGL 239 (493)
Q Consensus 161 ~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~ 239 (493)
.. ....+|++|.. +.++..+++.+ . .....+..+..+......+++++++|||.+||+.++++++..+++
T Consensus 149 ---~~---~~~~~pglp~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~ 219 (442)
T PLN02208 149 ---GK---LGVPPPGYPSSKVLFRENDAHAL--A-TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHK 219 (442)
T ss_pred ---cc---cCCCCCCCCCcccccCHHHcCcc--c-ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCC
Confidence 00 01225677642 23556666642 1 111112222222223455788999999999999999999888778
Q ss_pred ceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCC
Q 011106 240 SVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIG 319 (493)
Q Consensus 240 ~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~ 319 (493)
+++.|||+....+. ...+++++.+|||++++++||||||||+..++.+++.+++.+++.++.+++|+.+.+.
T Consensus 220 ~v~~vGpl~~~~~~-------~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~- 291 (442)
T PLN02208 220 KVLLTGPMFPEPDT-------SKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPR- 291 (442)
T ss_pred CEEEEeecccCcCC-------CCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCC-
Confidence 99999999864310 1235789999999998889999999999999999999999999999999999987531
Q ss_pred CCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchhhH
Q 011106 320 FDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNA 399 (493)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na 399 (493)
.+.... ..+|++|.++++ ..|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||
T Consensus 292 ---~~~~~~-~~lp~~f~~r~~--~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na 365 (442)
T PLN02208 292 ---GSSTVQ-EGLPEGFEERVK--GRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFT 365 (442)
T ss_pred ---cccchh-hhCCHHHHHHHh--cCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHH
Confidence 000111 348999999988 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHH
Q 011106 400 KFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET-DKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAA 478 (493)
Q Consensus 400 ~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~-~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 478 (493)
+++++.||+|+.+....+..++.++|+++|+++|+++ +.|+.+|++|+++++.+. . +|||.++++++++.+
T Consensus 366 ~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~-------~-~gsS~~~l~~~v~~l 437 (442)
T PLN02208 366 RLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV-------S-PGLLTGYVDKFVEEL 437 (442)
T ss_pred HHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh-------c-CCcHHHHHHHHHHHH
Confidence 9988767999999762112499999999999999876 368899999999999984 4 678999999999998
Q ss_pred Hhh
Q 011106 479 ISM 481 (493)
Q Consensus 479 ~~~ 481 (493)
++.
T Consensus 438 ~~~ 440 (442)
T PLN02208 438 QEY 440 (442)
T ss_pred HHh
Confidence 664
No 6
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=2.8e-66 Score=515.76 Aligned_cols=452 Identities=25% Similarity=0.424 Sum_probs=346.1
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccC---C---CC---CCceEEeccCCCCCCCCC
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSL---P---PN---SSIDLHEIPFNSSSHGLP 75 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~---~---~~---~~i~~~~i~~~~~~~~l~ 75 (493)
++||+++|+|++||++|+++||+.|+. +|..|||++++.+...+.+.. . .. ..+.|..++ +++|
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~--~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p-----dglp 79 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLAS--KGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE-----DGWA 79 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHh--CCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC-----CCCC
Confidence 679999999999999999999999999 999999999997766554210 0 00 124444444 5676
Q ss_pred CCCCCCCCCChhhHHHHHHHH-hhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHH
Q 011106 76 PNSENCDVLPYNLVIHLLRAS-TSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACY 154 (493)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~ 154 (493)
++.+...+ +..+...+ ..+.+.++++|+++..+++++++||+|.+..|+..+|+++|||++.|++++++.+..+
T Consensus 80 ~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~ 154 (480)
T PLN02555 80 EDDPRRQD-----LDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAY 154 (480)
T ss_pred CCcccccC-----HHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHH
Confidence 65432111 12333333 3567788888887643334459999999999999999999999999999999988877
Q ss_pred hhhccc-CCCCCCC--CCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHH
Q 011106 155 YSFWTN-LPHNKVT--SDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFI 231 (493)
Q Consensus 155 ~~~~~~-~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~ 231 (493)
++.... .+..... ...+.+|++|. ++..+++.++........+...+.+......+++++++|||.+||+.+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~ 231 (480)
T PLN02555 155 YHYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIID 231 (480)
T ss_pred HHHhhcCCCcccccCCCceeecCCCCC---cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHH
Confidence 765432 1211111 12355788877 88888887653211122333334444556677889999999999999999
Q ss_pred HHHHhcCCceeeccccccccccc-cccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcE
Q 011106 232 YLKRKLGLSVWPVGPILLSLENR-ANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNF 310 (493)
Q Consensus 232 ~~~~~~~~~~~~vGpl~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~v 310 (493)
.++... + ++.|||+....... .......+..++++.+||+++++++||||||||+..++.+++.+++.+++.++++|
T Consensus 232 ~l~~~~-~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~f 309 (480)
T PLN02555 232 YMSKLC-P-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSF 309 (480)
T ss_pred HHhhCC-C-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeE
Confidence 887644 3 99999997542110 10011113445789999999988899999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEeccc
Q 011106 311 IWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWP 390 (493)
Q Consensus 311 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P 390 (493)
||+++... ...+... ..+|+++.++. ++|+.+++|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 310 lW~~~~~~---~~~~~~~-~~lp~~~~~~~---~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P 382 (480)
T PLN02555 310 LWVMRPPH---KDSGVEP-HVLPEEFLEKA---GDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFP 382 (480)
T ss_pred EEEEecCc---ccccchh-hcCChhhhhhc---CCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCC
Confidence 99987421 0001111 34788887765 46778889999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHhhhhceeEEeecC--CCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChH
Q 011106 391 MAAEQFFNAKFLEQEMGVCVEVARG--KTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSV 468 (493)
Q Consensus 391 ~~~DQ~~na~~v~~~lG~G~~~~~~--~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~ 468 (493)
++.||+.||+++++.||+|+.+..+ ....++.++|.++|+++|.++ +|+.+|+||++|++.+++|+ .+||||.
T Consensus 383 ~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~-~g~~~r~ra~~l~~~a~~A~----~egGSS~ 457 (480)
T PLN02555 383 QWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGE-KAAELKQNALKWKEEAEAAV----AEGGSSD 457 (480)
T ss_pred CccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHh----cCCCcHH
Confidence 9999999999999999999999421 014689999999999999876 78899999999999999999 9999999
Q ss_pred HHHHHHHHHHHhhcccc
Q 011106 469 KAMDDFLSAAISMKNKI 485 (493)
Q Consensus 469 ~~~~~~~~~~~~~~~~~ 485 (493)
+++++|++++.+...+|
T Consensus 458 ~~l~~~v~~i~~~~~~~ 474 (480)
T PLN02555 458 RNFQEFVDKLVRKSVEI 474 (480)
T ss_pred HHHHHHHHHHHhcccee
Confidence 99999999998875443
No 7
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=4.7e-66 Score=512.62 Aligned_cols=447 Identities=29% Similarity=0.498 Sum_probs=346.3
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHH-hcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCC
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIE-QRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSE 79 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~-~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~ 79 (493)
|-..++||+++|+|++||++|+++||+.|. . +|+.|||++++.+...+.+......++.++.+|.+ ..+++++...
T Consensus 1 ~~~~~pHVvl~P~paqGHi~P~l~LAk~La~~--~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p-~~~glp~~~~ 77 (481)
T PLN02992 1 MHITKPHAAMFSSPGMGHVIPVIELGKRLSAN--HGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSP-DISGLVDPSA 77 (481)
T ss_pred CCCCCcEEEEeCCcccchHHHHHHHHHHHHhC--CCcEEEEEeCCCchhhhhhccccCCCceEEECCCc-cccCCCCCCc
Confidence 445678999999999999999999999998 7 89999999999876555332211136889999976 3345542111
Q ss_pred CCCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhcc
Q 011106 80 NCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWT 159 (493)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~ 159 (493)
.....+......+.+.+++++++.. .+|++||+|.+..|+..+|+++|||++.|++++++.++.+.+.+.
T Consensus 78 -------~~~~~~~~~~~~~~~~~~~~l~~~~---~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~ 147 (481)
T PLN02992 78 -------HVVTKIGVIMREAVPTLRSKIAEMH---QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPT 147 (481)
T ss_pred -------cHHHHHHHHHHHhHHHHHHHHHhcC---CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhh
Confidence 1112333444566778888887652 358999999999999999999999999999999887765554332
Q ss_pred c-CCCCC---CCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHH
Q 011106 160 N-LPHNK---VTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKR 235 (493)
Q Consensus 160 ~-~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~ 235 (493)
. .+... ...+.+.+|+++. ++..+++..+... .......+.+......+++++++|||.+||+.+++.++.
T Consensus 148 ~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~ 222 (481)
T PLN02992 148 LDKDIKEEHTVQRKPLAMPGCEP---VRFEDTLDAYLVP--DEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQD 222 (481)
T ss_pred hccccccccccCCCCcccCCCCc---cCHHHhhHhhcCC--CcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhh
Confidence 1 11110 0012345777776 7777777544322 122334444555566778999999999999999998865
Q ss_pred h--c----CCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCc
Q 011106 236 K--L----GLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKN 309 (493)
Q Consensus 236 ~--~----~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~ 309 (493)
. + .++++.|||++.... ....++++.+|||++++++||||||||+..++.+++.+++.+|+.++++
T Consensus 223 ~~~~~~~~~~~v~~VGPl~~~~~--------~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~ 294 (481)
T PLN02992 223 PKLLGRVARVPVYPIGPLCRPIQ--------SSKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQR 294 (481)
T ss_pred ccccccccCCceEEecCccCCcC--------CCcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCC
Confidence 2 1 257999999975321 1123457999999998899999999999999999999999999999999
Q ss_pred EEEEEcCCCC-------CCCC----cchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHH
Q 011106 310 FIWVVRPPIG-------FDIN----SEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLE 378 (493)
Q Consensus 310 vi~~~~~~~~-------~~~~----~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~e 378 (493)
|||+++.... +..+ .+... +.+|++|.++++ ..++++.+|+||.+||+|+++++|||||||||++|
T Consensus 295 flW~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~lp~~f~eR~~--~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~E 371 (481)
T PLN02992 295 FVWVVRPPVDGSACSAYFSANGGETRDNTP-EYLPEGFVSRTH--DRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLE 371 (481)
T ss_pred EEEEEeCCcccccccccccCcccccccchh-hhCCHHHHHHhc--CCCEEEeecCCHHHHhCCcccCeeEecCchhHHHH
Confidence 9999964210 0000 00011 348999999998 89999999999999999999999999999999999
Q ss_pred HHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Q 011106 379 ALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMK 458 (493)
Q Consensus 379 al~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~ 458 (493)
|+++|||||++|+++||+.||+++++.||+|+.++. .+..++.++|+++|+++|.++ +|+.++++|+++++.+++|+
T Consensus 372 al~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~-~~~~~~~~~l~~av~~vm~~~-~g~~~r~~a~~~~~~a~~Av- 448 (481)
T PLN02992 372 SVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDD-PKEVISRSKIEALVRKVMVEE-EGEEMRRKVKKLRDTAEMSL- 448 (481)
T ss_pred HHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecC-CCCcccHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHh-
Confidence 999999999999999999999999656699999975 113589999999999999887 78899999999999999999
Q ss_pred ccccC--CCChHHHHHHHHHHHHhhc
Q 011106 459 DEEGC--RGSSVKAMDDFLSAAISMK 482 (493)
Q Consensus 459 ~~~~~--~g~~~~~~~~~~~~~~~~~ 482 (493)
.. ||||.+++++|++++++-.
T Consensus 449 ---~~~~GGSS~~~l~~~v~~~~~~~ 471 (481)
T PLN02992 449 ---SIDGGGVAHESLCRVTKECQRFL 471 (481)
T ss_pred ---cCCCCCchHHHHHHHHHHHHHHH
Confidence 73 9999999999999987754
No 8
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=8.3e-66 Score=519.10 Aligned_cols=458 Identities=34% Similarity=0.622 Sum_probs=347.8
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCC------CCceEEeccCCCCCCCC
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPN------SSIDLHEIPFNSSSHGL 74 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~------~~i~~~~i~~~~~~~~l 74 (493)
|..++.||+|+|+|++||++|+++||+.|+. +||+|||++++.+...+++.+... ..+.+..++++...+++
T Consensus 1 ~~~~~~hVvlvp~pa~GHi~P~L~LAk~L~~--rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~gl 78 (482)
T PLN03007 1 MNHEKLHILFFPFMAHGHMIPTLDMAKLFSS--RGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGL 78 (482)
T ss_pred CCCCCcEEEEECCCccccHHHHHHHHHHHHh--CCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCC
Confidence 5656789999999999999999999999999 999999999999887766544210 12355555655333467
Q ss_pred CCCCCCCCCC-------ChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechh
Q 011106 75 PPNSENCDVL-------PYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSG 147 (493)
Q Consensus 75 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~ 147 (493)
|++.+..... ....+..+....+.+.+.+++++++.. ||+||+|.++.|+..+|+++|||++.|++++
T Consensus 79 P~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-----~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~ 153 (482)
T PLN03007 79 PEGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTR-----PDCLVADMFFPWATEAAEKFGVPRLVFHGTG 153 (482)
T ss_pred CCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCEEEECCcchhHHHHHHHhCCCeEEeeccc
Confidence 7664433210 112233445555667777777776554 9999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCCCCCC-C-CCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEecccccc
Q 011106 148 SYGLACYYSFWTNLPHNKV-T-SDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEF 225 (493)
Q Consensus 148 ~~~~~~~~~~~~~~p~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l 225 (493)
++....+++.....+.... . .+.+.+|++|..+.++..+++.. .....+..++....+...+++++++|||.+|
T Consensus 154 a~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~l 229 (482)
T PLN03007 154 YFSLCASYCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDA----DEESPMGKFMKEVRESEVKSFGVLVNSFYEL 229 (482)
T ss_pred HHHHHHHHHHHhcccccccCCCCceeeCCCCCCccccCHHhcCCC----CCchhHHHHHHHHHhhcccCCEEEEECHHHH
Confidence 8877665544332222111 1 11234677764333444444421 1112233444444455677889999999999
Q ss_pred chhHHHHHHHhcCCceeeccccccccccc--c-ccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHH
Q 011106 226 DQIGFIYLKRKLGLSVWPVGPILLSLENR--A-NAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMA 302 (493)
Q Consensus 226 e~~~~~~~~~~~~~~~~~vGpl~~~~~~~--~-~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~a 302 (493)
|+++.+.+++.....+++|||+....... . ......+..++++.+||++++++++|||||||+...+.+++.+++.+
T Consensus 230 e~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~ 309 (482)
T PLN03007 230 ESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAG 309 (482)
T ss_pred HHHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHH
Confidence 99989888877666899999986432110 0 00111222357899999999889999999999998889999999999
Q ss_pred HHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHh
Q 011106 303 LEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIH 382 (493)
Q Consensus 303 l~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~ 382 (493)
|+.++++|||+++... +..... ..+|++|.+++. +.|+++.+|+||.+||+|+++++|||||||||++||+++
T Consensus 310 l~~~~~~flw~~~~~~----~~~~~~-~~lp~~~~~r~~--~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~ 382 (482)
T PLN03007 310 LEGSGQNFIWVVRKNE----NQGEKE-EWLPEGFEERTK--GKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAA 382 (482)
T ss_pred HHHCCCCEEEEEecCC----cccchh-hcCCHHHHHHhc--cCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHc
Confidence 9999999999998642 000111 248999999988 999999999999999999999999999999999999999
Q ss_pred CCcEecccccccchhhHHHHhhhhceeEEeecC-----CCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q 011106 383 GVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARG-----KTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAM 457 (493)
Q Consensus 383 GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~-----~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~ 457 (493)
|||||++|+++||+.||+++++.+++|+.+..+ +...++.++|+++|+++|.++ +|++||+||+++++.+++|+
T Consensus 383 GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~-~~~~~r~~a~~~~~~a~~a~ 461 (482)
T PLN03007 383 GLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGE-EAEERRLRAKKLAEMAKAAV 461 (482)
T ss_pred CCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998766777776321 124689999999999999987 78899999999999999999
Q ss_pred hccccCCCChHHHHHHHHHHHHhh
Q 011106 458 KDEEGCRGSSVKAMDDFLSAAISM 481 (493)
Q Consensus 458 ~~~~~~~g~~~~~~~~~~~~~~~~ 481 (493)
.+||||.+++++|++.+++.
T Consensus 462 ----~~gGsS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 462 ----EEGGSSFNDLNKFMEELNSR 481 (482)
T ss_pred ----hCCCcHHHHHHHHHHHHHhc
Confidence 99999999999999998754
No 9
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.4e-65 Score=509.06 Aligned_cols=436 Identities=27% Similarity=0.476 Sum_probs=336.1
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCC
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVL 84 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~ 84 (493)
+.||+++|+|++||++|+++||+.|+. +|+.|||++++.+..... ... .++++..+| +++|++.... .
T Consensus 7 ~~HVvlvPfpaqGHi~P~l~LAk~La~--~G~~VT~v~T~~n~~~~~-~~~--~~i~~~~ip-----~glp~~~~~~--~ 74 (451)
T PLN02410 7 RRRVVLVPVPAQGHISPMMQLAKTLHL--KGFSITIAQTKFNYFSPS-DDF--TDFQFVTIP-----ESLPESDFKN--L 74 (451)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHHc--CCCEEEEEeCcccccccc-cCC--CCeEEEeCC-----CCCCcccccc--c
Confidence 459999999999999999999999999 999999999987642111 111 368888887 4676632111 1
Q ss_pred ChhhHHHHHHHHhhhhHHHHHHHHHhhc-CCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhccc---
Q 011106 85 PYNLVIHLLRASTSLKPAFKEVISSLIN-QGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTN--- 160 (493)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~--- 160 (493)
. ....+......+.+.+.++++++.. ...++++||+|.+..|+..+|+++|||++.|++++++.+..++++...
T Consensus 75 ~--~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~ 152 (451)
T PLN02410 75 G--PIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYAN 152 (451)
T ss_pred C--HHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhc
Confidence 1 1122222334566778888877532 234579999999999999999999999999999999888766643221
Q ss_pred ---CCCCCC-CCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHh
Q 011106 161 ---LPHNKV-TSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRK 236 (493)
Q Consensus 161 ---~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~ 236 (493)
.|.... ..+...+|+++. ++..+++.+... ........+.... ...+++++++|||.+||+.++++++..
T Consensus 153 ~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~--~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~~~~~~l~~~ 226 (451)
T PLN02410 153 NVLAPLKEPKGQQNELVPEFHP---LRCKDFPVSHWA--SLESIMELYRNTV-DKRTASSVIINTASCLESSSLSRLQQQ 226 (451)
T ss_pred cCCCCccccccCccccCCCCCC---CChHHCcchhcC--CcHHHHHHHHHHh-hcccCCEEEEeChHHhhHHHHHHHHhc
Confidence 121111 112245777766 666676654321 1112222222222 345788999999999999999999887
Q ss_pred cCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcC
Q 011106 237 LGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRP 316 (493)
Q Consensus 237 ~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~ 316 (493)
+++++++|||+....... ...+...+++.+|||++++++||||||||...++.+++.+++.+|+.++.+|||+++.
T Consensus 227 ~~~~v~~vGpl~~~~~~~----~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~ 302 (451)
T PLN02410 227 LQIPVYPIGPLHLVASAP----TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRP 302 (451)
T ss_pred cCCCEEEecccccccCCC----ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEcc
Confidence 777899999997543110 0112233568999999988999999999999999999999999999999999999974
Q ss_pred CCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccch
Q 011106 317 PIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQF 396 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~ 396 (493)
+. ..+......+|++|.+++. +|..+++|+||.+||+|+++++|||||||||++||+++|||||++|++.||+
T Consensus 303 ~~----~~~~~~~~~lp~~f~er~~---~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~ 375 (451)
T PLN02410 303 GS----VRGSEWIESLPKEFSKIIS---GRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQK 375 (451)
T ss_pred Cc----ccccchhhcCChhHHHhcc---CCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCH
Confidence 31 0000000238999998874 5667779999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHH
Q 011106 397 FNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLS 476 (493)
Q Consensus 397 ~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ 476 (493)
.||+++++.||+|+.+. ..++.++|+++|+++|.++ +|++||++|+++++.+++|+ .+||||.+++++|++
T Consensus 376 ~na~~~~~~~~~G~~~~----~~~~~~~v~~av~~lm~~~-~~~~~r~~a~~l~~~~~~a~----~~gGsS~~~l~~fv~ 446 (451)
T PLN02410 376 VNARYLECVWKIGIQVE----GDLDRGAVERAVKRLMVEE-EGEEMRKRAISLKEQLRASV----ISGGSSHNSLEEFVH 446 (451)
T ss_pred HHHHHHHHHhCeeEEeC----CcccHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHh----cCCCCHHHHHHHHHH
Confidence 99999998889999996 3689999999999999987 58899999999999999999 999999999999999
Q ss_pred HHHh
Q 011106 477 AAIS 480 (493)
Q Consensus 477 ~~~~ 480 (493)
.++.
T Consensus 447 ~~~~ 450 (451)
T PLN02410 447 FMRT 450 (451)
T ss_pred HHHh
Confidence 9875
No 10
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.3e-65 Score=504.91 Aligned_cols=441 Identities=25% Similarity=0.386 Sum_probs=344.6
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCC--ceEEeccCCCCCCCCCCCC
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSS--IDLHEIPFNSSSHGLPPNS 78 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~--i~~~~i~~~~~~~~l~~~~ 78 (493)
|.+.++||+++|+|++||++|+++||+.|+. +|+.|||++++.+...+........+ +.+..+|. .+++|++.
T Consensus 1 ~~~~~~Hvvl~P~paqGHi~P~l~LAk~La~--~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~---~~glp~g~ 75 (453)
T PLN02764 1 MGGLKFHVLMYPWFATGHMTPFLFLANKLAE--KGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPH---VDGLPVGT 75 (453)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHh--CCCEEEEEeCcchhhhhcccccCCCCceEEEEECCC---cCCCCCcc
Confidence 6667899999999999999999999999999 99999999999876655542110023 55555553 36888775
Q ss_pred CCCCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhc
Q 011106 79 ENCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFW 158 (493)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~ 158 (493)
+...+.+......+..++..+.+.+.+++++.. ||+||+|. ..|+..+|+.+|||++.|++++++.+..++.+.
T Consensus 76 e~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~-----~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~~ 149 (453)
T PLN02764 76 ETVSEIPVTSADLLMSAMDLTRDQVEVVVRAVE-----PDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLVPG 149 (453)
T ss_pred cccccCChhHHHHHHHHHHHhHHHHHHHHHhCC-----CCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhccc
Confidence 554444433345566667778888998888765 89999995 789999999999999999999998877765311
Q ss_pred ccCCCCCCCCCcccCCCCCcc-cccChhhchhhhhc-c-CCCCchhhhhhccccccccCceEEeccccccchhHHHHHHH
Q 011106 159 TNLPHNKVTSDEFVLPDFEEA-SRIHKSQLALNMLE-A-DGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKR 235 (493)
Q Consensus 159 ~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~ 235 (493)
... ...+|++|.. +.++..+++.+... . ...+.+.....+.......++++++|||.+||+.++++++.
T Consensus 150 ~~~--------~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~ 221 (453)
T PLN02764 150 GEL--------GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEK 221 (453)
T ss_pred ccC--------CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHh
Confidence 000 0224666632 12555666553221 1 11122333444443556678899999999999999999987
Q ss_pred hcCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEc
Q 011106 236 KLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVR 315 (493)
Q Consensus 236 ~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~ 315 (493)
..+++++.|||++.... . .....+++.+|||++++++||||||||+..++.+++.+++.+|+.++.+|+|+++
T Consensus 222 ~~~~~v~~VGPL~~~~~--~-----~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r 294 (453)
T PLN02764 222 HCRKKVLLTGPVFPEPD--K-----TRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVK 294 (453)
T ss_pred hcCCcEEEeccCccCcc--c-----cccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 55568999999975431 0 0123568999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccc
Q 011106 316 PPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQ 395 (493)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ 395 (493)
...+ .+... ..+|++|.++++ ..++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||
T Consensus 295 ~~~~----~~~~~-~~lp~~f~~r~~--grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ 367 (453)
T PLN02764 295 PPRG----SSTIQ-EALPEGFEERVK--GRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQ 367 (453)
T ss_pred CCCC----Ccchh-hhCCcchHhhhc--cCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccch
Confidence 5320 00111 359999999988 8899999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHH
Q 011106 396 FFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET-DKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDF 474 (493)
Q Consensus 396 ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~-~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~ 474 (493)
+.||+++++.||+|+.+.......++.++|+++|+++|+++ +.|+.+|++|+++++.+ .++|||.+++++|
T Consensus 368 ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~--------~~~GSS~~~l~~l 439 (453)
T PLN02764 368 VLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETL--------ASPGLLTGYVDNF 439 (453)
T ss_pred HHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH--------HhcCCHHHHHHHH
Confidence 99999998777999998641112589999999999999875 46888999999999999 4568899999999
Q ss_pred HHHHHhhc
Q 011106 475 LSAAISMK 482 (493)
Q Consensus 475 ~~~~~~~~ 482 (493)
++.+.+..
T Consensus 440 v~~~~~~~ 447 (453)
T PLN02764 440 IESLQDLV 447 (453)
T ss_pred HHHHHHhc
Confidence 99998765
No 11
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=6.1e-65 Score=503.87 Aligned_cols=438 Identities=25% Similarity=0.374 Sum_probs=337.1
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCC
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSEN 80 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~ 80 (493)
|. +++||+++|+|++||++|+++||+.|+. +|++|||++++.+...+........++.|..++++ ..+++|++.+.
T Consensus 1 ~~-~~~HVvlvPfpaqGHi~PmL~LAk~Las--~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP-~~dGLP~g~e~ 76 (446)
T PLN00414 1 MG-SKFHAFMYPWFGFGHMIPYLHLANKLAE--KGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLP-PVDGLPFGAET 76 (446)
T ss_pred CC-CCCEEEEecCcccchHHHHHHHHHHHHh--CCCEEEEEeCCchhhhhcccccCCCceEEEEecCC-CcCCCCCcccc
Confidence 55 7789999999999999999999999999 99999999999887766554321135888777765 35688877544
Q ss_pred CCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhccc
Q 011106 81 CDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTN 160 (493)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~ 160 (493)
..+.+......+......+.+.++++++... ||+||+|. ..|+..+|+.+|||++.|++++++.++.++++...
T Consensus 77 ~~~l~~~~~~~~~~a~~~l~~~l~~~L~~~~-----p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~ 150 (446)
T PLN00414 77 ASDLPNSTKKPIFDAMDLLRDQIEAKVRALK-----PDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAE 150 (446)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhcCC-----CeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhh
Confidence 3333322234456666677778887776554 89999995 78999999999999999999999888776642210
Q ss_pred CCCCCCCCCcccCCCCCcc-cccChhhch--hhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhc
Q 011106 161 LPHNKVTSDEFVLPDFEEA-SRIHKSQLA--LNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKL 237 (493)
Q Consensus 161 ~p~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~ 237 (493)
....+|++|.. ..++..+.. .++. . ....+.+......+++++++|||.+||+.+++.++..+
T Consensus 151 --------~~~~~pg~p~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~ 216 (446)
T PLN00414 151 --------LGFPPPDYPLSKVALRGHDANVCSLFA--N----SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQC 216 (446)
T ss_pred --------cCCCCCCCCCCcCcCchhhcccchhhc--c----cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhc
Confidence 01224555531 112222211 2111 0 11223333445567889999999999999999998866
Q ss_pred CCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 011106 238 GLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPP 317 (493)
Q Consensus 238 ~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~ 317 (493)
+++++.|||+...... . ......+++.+|||++++++||||||||....+.+++.+++.+|+.++.+|+|++...
T Consensus 217 ~~~v~~VGPl~~~~~~-~----~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~ 291 (446)
T PLN00414 217 QRKVLLTGPMLPEPQN-K----SGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPP 291 (446)
T ss_pred CCCeEEEcccCCCccc-c----cCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 6789999999753210 0 0111235799999999999999999999999999999999999999999999999753
Q ss_pred CCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchh
Q 011106 318 IGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFF 397 (493)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~ 397 (493)
.. .+... ..+|++|.++++ ..++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.
T Consensus 292 ~~----~~~~~-~~lp~~f~~r~~--~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~ 364 (446)
T PLN00414 292 KG----SSTVQ-EALPEGFEERVK--GRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVL 364 (446)
T ss_pred CC----cccch-hhCChhHHHHhc--CCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHH
Confidence 10 00111 358999999998 889999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHH
Q 011106 398 NAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET-DKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLS 476 (493)
Q Consensus 398 na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~-~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ 476 (493)
||+++++.||+|+.+....+..++.++|+++|+++|.++ +.|+++|++|+++++.+. .+|||+ ..++++++
T Consensus 365 na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~-------~~gg~s-s~l~~~v~ 436 (446)
T PLN00414 365 ITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV-------SPGLLS-GYADKFVE 436 (446)
T ss_pred HHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH-------cCCCcH-HHHHHHHH
Confidence 999998778999999752113589999999999999875 368889999999999986 778844 34899998
Q ss_pred HHHhhc
Q 011106 477 AAISMK 482 (493)
Q Consensus 477 ~~~~~~ 482 (493)
++++..
T Consensus 437 ~~~~~~ 442 (446)
T PLN00414 437 ALENEV 442 (446)
T ss_pred HHHHhc
Confidence 886554
No 12
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=5.1e-65 Score=503.42 Aligned_cols=444 Identities=24% Similarity=0.387 Sum_probs=334.7
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccc-hhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLN-IKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCD 82 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~-~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~ 82 (493)
+++||+++|+|++||++|+++||+.|+.+ +|+.|||++++.+ ...+........+++|+.++ |++|++.....
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~-~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~-----dglp~g~~~~~ 75 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKT-TGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFS-----DGFDDGVISNT 75 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhC-CCcEEEEEeccchhhhhhhccCCCCCCEEEEEcC-----CCCCCcccccc
Confidence 46799999999999999999999999841 6999999999854 22211111100368888886 57776543211
Q ss_pred CCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhcccCC
Q 011106 83 VLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTNLP 162 (493)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~p 162 (493)
+. ....+......+.+.+.++++++..+++++++||+|.+..|+..+|+++|||++.|++++++.+..+++.....
T Consensus 76 ~~---~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~- 151 (455)
T PLN02152 76 DD---VQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN- 151 (455)
T ss_pred cc---HHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC-
Confidence 11 11334445556778888888876433345699999999999999999999999999999999888877654221
Q ss_pred CCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccc--cCceEEeccccccchhHHHHHHHhcCCc
Q 011106 163 HNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWV--NSNGILCNTIEEFDQIGFIYLKRKLGLS 240 (493)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~s~~~le~~~~~~~~~~~~~~ 240 (493)
...+.+|+++. ++..+++.++........+...+.+...... .++++++|||++||+.+++.++. .+
T Consensus 152 -----~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~---~~ 220 (455)
T PLN02152 152 -----NSVFEFPNLPS---LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN---IE 220 (455)
T ss_pred -----CCeeecCCCCC---CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---CC
Confidence 12345778776 7888888766432222333344444444332 24689999999999999998865 26
Q ss_pred eeecccccccccccccc-CC-CC-CCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 011106 241 VWPVGPILLSLENRANA-GK-EG-GTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPP 317 (493)
Q Consensus 241 ~~~vGpl~~~~~~~~~~-~~-~~-~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~ 317 (493)
++.|||+.......... .. .. ++.++++.+|||++++++||||||||+..++.+++++++.+|+.++++|||+++.+
T Consensus 221 v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~ 300 (455)
T PLN02152 221 MVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDK 300 (455)
T ss_pred EEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 99999997532100000 00 01 22345799999999888999999999999999999999999999999999999753
Q ss_pred CCCCC---CcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEeccccccc
Q 011106 318 IGFDI---NSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAE 394 (493)
Q Consensus 318 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~D 394 (493)
..-+. .++... -.++++|.++. +++..+++|+||.+||+|+++++|||||||||++||+++|||||++|++.|
T Consensus 301 ~~~~~~~~~~~~~~-~~~~~~f~e~~---~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~D 376 (455)
T PLN02152 301 LNREAKIEGEEETE-IEKIAGFRHEL---EEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSD 376 (455)
T ss_pred cccccccccccccc-cccchhHHHhc---cCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEecccccc
Confidence 10000 000000 11467887776 456677899999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHH
Q 011106 395 QFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDF 474 (493)
Q Consensus 395 Q~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~ 474 (493)
|+.||+++++.||+|+.+..++...++.++|+++|+++|+++ ++.||+||+++++.+++++ .+||||.++++++
T Consensus 377 Q~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~--~~~~r~~a~~~~~~~~~a~----~~ggsS~~nl~~l 450 (455)
T PLN02152 377 QPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEK--SVELRESAEKWKRLAIEAG----GEGGSSDKNVEAF 450 (455)
T ss_pred chHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHH----cCCCcHHHHHHHH
Confidence 999999999877888888642234579999999999999754 5579999999999999999 9999999999999
Q ss_pred HHHH
Q 011106 475 LSAA 478 (493)
Q Consensus 475 ~~~~ 478 (493)
++++
T Consensus 451 i~~i 454 (455)
T PLN02152 451 VKTL 454 (455)
T ss_pred HHHh
Confidence 9976
No 13
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=2.6e-64 Score=502.12 Aligned_cols=434 Identities=28% Similarity=0.454 Sum_probs=328.7
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHH--HHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALH--IEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENC 81 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~--L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~ 81 (493)
++.||+|+|+|++||++|+++||+. |.+ +|++|||++++.+...++..+.....+++..++ +++|++..
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~--~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~-----~glp~~~~-- 77 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSS--KNLHFTLATTEQARDLLSTVEKPRRPVDLVFFS-----DGLPKDDP-- 77 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhc--CCcEEEEEeccchhhhhccccCCCCceEEEECC-----CCCCCCcc--
Confidence 4679999999999999999999999 558 999999999998877765433211345555554 56766532
Q ss_pred CCCChhhHHHHHHHH-hhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhcc-
Q 011106 82 DVLPYNLVIHLLRAS-TSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWT- 159 (493)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~- 159 (493)
... ..+...+ +.+.+.+++++++.+ ||+||+|.+..|+..+|+.+|||++.|++.+++.+..+++...
T Consensus 78 -~~~----~~~~~~~~~~~~~~l~~~l~~~~-----~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~ 147 (456)
T PLN02210 78 -RAP----ETLLKSLNKVGAKNLSKIIEEKR-----YSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK 147 (456)
T ss_pred -cCH----HHHHHHHHHhhhHHHHHHHhcCC-----CcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc
Confidence 111 1222333 455667777776654 9999999999999999999999999999999888877665422
Q ss_pred cCCCCCCC--CCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhc
Q 011106 160 NLPHNKVT--SDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKL 237 (493)
Q Consensus 160 ~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~ 237 (493)
..+..... .+...+|+++. ++..+++.++.... ...+.....+.......++++++|||.+||+.+++.++. .
T Consensus 148 ~~~~~~~~~~~~~~~~Pgl~~---~~~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~ 222 (456)
T PLN02210 148 TNSFPDLEDLNQTVELPALPL---LEVRDLPSFMLPSG-GAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD-L 222 (456)
T ss_pred cCCCCcccccCCeeeCCCCCC---CChhhCChhhhcCC-chHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-c
Confidence 11111111 12245777765 67777776554321 111222222333344567899999999999999998876 3
Q ss_pred CCceeeccccccccc--ccc---ccCC-C-CCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcE
Q 011106 238 GLSVWPVGPILLSLE--NRA---NAGK-E-GGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNF 310 (493)
Q Consensus 238 ~~~~~~vGpl~~~~~--~~~---~~~~-~-~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~v 310 (493)
+++++|||++.... ... .... . .+..++++.+||+++++++||||||||....+.+++.+++.+|+.++++|
T Consensus 223 -~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~f 301 (456)
T PLN02210 223 -KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPF 301 (456)
T ss_pred -CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCE
Confidence 58999999974210 000 0010 0 13446779999999988899999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEeccc
Q 011106 311 IWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWP 390 (493)
Q Consensus 311 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P 390 (493)
||+++... . ...+..+.++.. +++..+++|+||.+||+|+++++|||||||||++|++++|||||++|
T Consensus 302 lw~~~~~~------~----~~~~~~~~~~~~--~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P 369 (456)
T PLN02210 302 LWVIRPKE------K----AQNVQVLQEMVK--EGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYP 369 (456)
T ss_pred EEEEeCCc------c----ccchhhHHhhcc--CCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecc
Confidence 99997531 0 112344544442 24446779999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHhhhhceeEEeecCC-CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHH
Q 011106 391 MAAEQFFNAKFLEQEMGVCVEVARGK-TCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVK 469 (493)
Q Consensus 391 ~~~DQ~~na~~v~~~lG~G~~~~~~~-~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~ 469 (493)
+++||+.||+++++.||+|+.+.... +..++.++|+++|+++|.++ +|+++|+||+++++.+++|+ .+||||.+
T Consensus 370 ~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~-~g~~~r~~a~~l~~~a~~Av----~~gGSS~~ 444 (456)
T PLN02210 370 SWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGP-AAADIRRRAAELKHVARLAL----APGGSSAR 444 (456)
T ss_pred cccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHh----cCCCcHHH
Confidence 99999999999997679999996411 23689999999999999886 78889999999999999999 99999999
Q ss_pred HHHHHHHHHH
Q 011106 470 AMDDFLSAAI 479 (493)
Q Consensus 470 ~~~~~~~~~~ 479 (493)
++++|++.++
T Consensus 445 ~l~~~v~~~~ 454 (456)
T PLN02210 445 NLDLFISDIT 454 (456)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 14
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=3.9e-64 Score=500.49 Aligned_cols=433 Identities=24% Similarity=0.401 Sum_probs=331.3
Q ss_pred CCCC-CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCC
Q 011106 1 MAQS-KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSE 79 (493)
Q Consensus 1 m~~~-~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~ 79 (493)
|.|. +.||+++|+|++||++|+++||+.|.. +|++|||++++.+...+.+......+++++.+|. +++.+.
T Consensus 1 ~~~~~~~HVVlvPfPaqGHi~PmL~LAk~Las--~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~-----g~~~~~- 72 (448)
T PLN02562 1 MKVTQRPKIILVPYPAQGHVTPMLKLASAFLS--RGFEPVVITPEFIHRRISATLDPKLGITFMSISD-----GQDDDP- 72 (448)
T ss_pred CCCCCCcEEEEEcCccccCHHHHHHHHHHHHh--CCCEEEEEeCcchhhhhhhccCCCCCEEEEECCC-----CCCCCc-
Confidence 5543 569999999999999999999999999 9999999999988766655321113688988873 433211
Q ss_pred CCCCCChhhHHHHHHHHh-hhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhc
Q 011106 80 NCDVLPYNLVIHLLRAST-SLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFW 158 (493)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~ 158 (493)
+.. +..+...+. .+.+.+.++++++... .++++||+|.+..|+..+|+++|||++.|+++++..+..+++..
T Consensus 73 -----~~~-~~~l~~a~~~~~~~~l~~ll~~l~~~-~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~ 145 (448)
T PLN02562 73 -----PRD-FFSIENSMENTMPPQLERLLHKLDED-GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIP 145 (448)
T ss_pred -----ccc-HHHHHHHHHHhchHHHHHHHHHhcCC-CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHH
Confidence 111 223444554 5778888888876422 24589999999999999999999999999999888777655432
Q ss_pred ccC-----CCCCC--CCCc-ccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHH
Q 011106 159 TNL-----PHNKV--TSDE-FVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGF 230 (493)
Q Consensus 159 ~~~-----p~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~ 230 (493)
... +.... ..+. ..+|+++. ++..+++.++............+.+..+...+++++++|||.+||+.++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~Pg~~~---l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 222 (448)
T PLN02562 146 ELVRTGLISETGCPRQLEKICVLPEQPL---LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDV 222 (448)
T ss_pred HHhhccccccccccccccccccCCCCCC---CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHH
Confidence 211 11000 0011 24677766 7778888765433222233444555556667788999999999999888
Q ss_pred HHHHHh----cCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCc-CCCHHHHHHHHHHHHh
Q 011106 231 IYLKRK----LGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMN-TISASQMMQLAMALEA 305 (493)
Q Consensus 231 ~~~~~~----~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~-~~~~~~~~~i~~al~~ 305 (493)
+..... ..++++.|||+........ .....++.+.++.+||++++++++|||||||+. .++.+++.+++.+++.
T Consensus 223 ~~~~~~~~~~~~~~v~~iGpl~~~~~~~~-~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~ 301 (448)
T PLN02562 223 KNHQASYNNGQNPQILQIGPLHNQEATTI-TKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEA 301 (448)
T ss_pred HHHHhhhccccCCCEEEecCccccccccc-CCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHH
Confidence 876532 3468999999986431100 000012334567899999988899999999986 6789999999999999
Q ss_pred CCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCc
Q 011106 306 SGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVP 385 (493)
Q Consensus 306 ~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP 385 (493)
++++|||+++... . +.+|+++.++. ++|+.+++|+||.+||+|+++++|||||||||++||+++|||
T Consensus 302 ~g~~fiW~~~~~~-------~---~~l~~~~~~~~---~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP 368 (448)
T PLN02562 302 SGRPFIWVLNPVW-------R---EGLPPGYVERV---SKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKR 368 (448)
T ss_pred CCCCEEEEEcCCc-------h---hhCCHHHHHHh---ccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCC
Confidence 9999999997531 0 23788887776 467888899999999999999999999999999999999999
Q ss_pred EecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCC
Q 011106 386 IIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRG 465 (493)
Q Consensus 386 ~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g 465 (493)
||++|+++||+.||+++++.+|+|+.+. .++.++|.++|+++|.++ +||+||++++++++++ .+||
T Consensus 369 ~l~~P~~~DQ~~na~~~~~~~g~g~~~~-----~~~~~~l~~~v~~~l~~~----~~r~~a~~l~~~~~~~-----~~gG 434 (448)
T PLN02562 369 LLCYPVAGDQFVNCAYIVDVWKIGVRIS-----GFGQKEVEEGLRKVMEDS----GMGERLMKLRERAMGE-----EARL 434 (448)
T ss_pred EEeCCcccchHHHHHHHHHHhCceeEeC-----CCCHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHhc-----CCCC
Confidence 9999999999999999987779998884 379999999999999988 8999999999988743 3468
Q ss_pred ChHHHHHHHHHHHH
Q 011106 466 SSVKAMDDFLSAAI 479 (493)
Q Consensus 466 ~~~~~~~~~~~~~~ 479 (493)
||.+++++|+++++
T Consensus 435 SS~~nl~~~v~~~~ 448 (448)
T PLN02562 435 RSMMNFTTLKDELK 448 (448)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999999874
No 15
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=6.3e-64 Score=494.41 Aligned_cols=441 Identities=29% Similarity=0.496 Sum_probs=339.5
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCC-CeEEEEEeCccchhhhh--ccCCCC---CCceEEeccCCCCCCCC-CCC
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHK-NYSITFVSTPLNIKKLK--SSLPPN---SSIDLHEIPFNSSSHGL-PPN 77 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~-Gh~Vt~~~~~~~~~~v~--~~~~~~---~~i~~~~i~~~~~~~~l-~~~ 77 (493)
++||+++|+|++||++|+++||+.|+. + |..|||++++.+...+. ...... .+++++.+|.+. .+++ +.+
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~--~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-~~~l~~~~ 79 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSS--VLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVD-VDNLVEPD 79 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHh--CCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCc-cccCCCCC
Confidence 569999999999999999999999997 6 99999998776544331 111100 258999999652 2333 211
Q ss_pred CCCCCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCc-eEEEechhHHHHHHHhh
Q 011106 78 SENCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVF-HAIFSGSGSYGLACYYS 156 (493)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP-~i~~~~~~~~~~~~~~~ 156 (493)
. .....+......+.+.++++|+++. .+|++||+|.+..|+..+|+++||| .+.++++.++.+..+++
T Consensus 80 -----~---~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~ 148 (470)
T PLN03015 80 -----A---TIFTKMVVKMRAMKPAVRDAVKSMK---RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVY 148 (470)
T ss_pred -----c---cHHHHHHHHHHhchHHHHHHHHhcC---CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHh
Confidence 1 1223455666778888999998764 2489999999999999999999999 58888888777665554
Q ss_pred hcccC-CCCC---CCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHH
Q 011106 157 FWTNL-PHNK---VTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIY 232 (493)
Q Consensus 157 ~~~~~-p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~ 232 (493)
.+... +... ...+.+.+|+++. ++..+++..+.... ......+.+......+++++++|||.+||+.+++.
T Consensus 149 l~~~~~~~~~~~~~~~~~~~vPg~p~---l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~ 223 (470)
T PLN03015 149 LPVLDTVVEGEYVDIKEPLKIPGCKP---VGPKELMETMLDRS--DQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAA 223 (470)
T ss_pred hhhhhcccccccCCCCCeeeCCCCCC---CChHHCCHhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHH
Confidence 42211 1001 1012355788876 88888886554321 12222333444457789999999999999999999
Q ss_pred HHHhc------CCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhC
Q 011106 233 LKRKL------GLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEAS 306 (493)
Q Consensus 233 ~~~~~------~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~ 306 (493)
++..+ .++++.|||+..... ....++++.+|||++++++||||||||+..++.+++.+++.+|+.+
T Consensus 224 l~~~~~~~~~~~~~v~~VGPl~~~~~--------~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s 295 (470)
T PLN03015 224 LREDMELNRVMKVPVYPIGPIVRTNV--------HVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELS 295 (470)
T ss_pred HHhhcccccccCCceEEecCCCCCcc--------cccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhC
Confidence 87752 256999999984220 0122357999999998899999999999999999999999999999
Q ss_pred CCcEEEEEcCCCCC-CCC--cchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhC
Q 011106 307 GKNFIWVVRPPIGF-DIN--SEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHG 383 (493)
Q Consensus 307 ~~~vi~~~~~~~~~-~~~--~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~G 383 (493)
+++|||+++..... ... ++....+.+|++|.++++ ..++++.+|+||.+||+|+++++|||||||||++||+++|
T Consensus 296 ~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~--~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~G 373 (470)
T PLN03015 296 GQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTR--GVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKG 373 (470)
T ss_pred CCcEEEEEecCccccccccccccchhhcCChHHHHhhc--cCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcC
Confidence 99999999743100 000 000011358999999988 8889999999999999999999999999999999999999
Q ss_pred CcEecccccccchhhHHHHhhhhceeEEeec-CCCCccCHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHhhhccc
Q 011106 384 VPIIGWPMAAEQFFNAKFLEQEMGVCVEVAR-GKTCEVKHEDVVAKIELVMNE-TDKGKEIRRKVSEVREMIKNAMKDEE 461 (493)
Q Consensus 384 vP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~-~~~~~~~~~~l~~ai~~~l~~-~~~~~~~~~~a~~l~~~~~~~~~~~~ 461 (493)
||||++|++.||+.||+++++.||+|+.+.. +....++.++|+++|+++|.+ .++|+.+|+||+++++.+++|+
T Consensus 374 vP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av---- 449 (470)
T PLN03015 374 VPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAW---- 449 (470)
T ss_pred CCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHh----
Confidence 9999999999999999999778899999952 112468999999999999963 2478899999999999999999
Q ss_pred cCCCChHHHHHHHHHHH
Q 011106 462 GCRGSSVKAMDDFLSAA 478 (493)
Q Consensus 462 ~~~g~~~~~~~~~~~~~ 478 (493)
.+||||.++++++++.+
T Consensus 450 ~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 450 SHGGSSYNSLFEWAKRC 466 (470)
T ss_pred cCCCcHHHHHHHHHHhc
Confidence 99999999999999876
No 16
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=9.9e-64 Score=495.17 Aligned_cols=445 Identities=26% Similarity=0.414 Sum_probs=331.3
Q ss_pred CCCcEEEEECCCCcccHHHHHHHHHHHHhcCCC--eEEEEEeCccch-hh----hhccCCCCCCceEEeccCCCCCCCCC
Q 011106 3 QSKENIVMFPFMAQGHIIPFLALALHIEQRHKN--YSITFVSTPLNI-KK----LKSSLPPNSSIDLHEIPFNSSSHGLP 75 (493)
Q Consensus 3 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~G--h~Vt~~~~~~~~-~~----v~~~~~~~~~i~~~~i~~~~~~~~l~ 75 (493)
|++.||+|+|+|++||++|+++||+.|+. +| ..|||++++.+. .. +........+++|+.+|.. +..+
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~--~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~---~~~~ 75 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIE--QDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPEL---EEKP 75 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHh--CCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCC---CCCC
Confidence 46789999999999999999999999999 88 999999988754 21 2211110046899999932 1111
Q ss_pred CCCCCCCCCChhhHHHHHHHHhhh----hHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHH
Q 011106 76 PNSENCDVLPYNLVIHLLRASTSL----KPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGL 151 (493)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~ 151 (493)
... ...+ ....+...+..+ .+.+.+++++...+++++++||+|.+..|+..+|+++|||++.|+++++..+
T Consensus 76 ~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~ 150 (468)
T PLN02207 76 TLG-GTQS----VEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFL 150 (468)
T ss_pred ccc-cccC----HHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHH
Confidence 100 1111 112333444444 3344555554322223459999999999999999999999999999998877
Q ss_pred HHHhhhcccC-CC-CC---CCCCcccCCCC-CcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEecccccc
Q 011106 152 ACYYSFWTNL-PH-NK---VTSDEFVLPDF-EEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEF 225 (493)
Q Consensus 152 ~~~~~~~~~~-p~-~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l 225 (493)
..+++.+... +. .. .....+.+|++ +. ++..+++.++... .. ...+.+......+++++++|||++|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~---l~~~dlp~~~~~~---~~-~~~~~~~~~~~~~~~~vlvNtf~~L 223 (468)
T PLN02207 151 AMMQYLADRHSKDTSVFVRNSEEMLSIPGFVNP---VPANVLPSALFVE---DG-YDAYVKLAILFTKANGILVNSSFDI 223 (468)
T ss_pred HHHHHhhhccccccccCcCCCCCeEECCCCCCC---CChHHCcchhcCC---cc-HHHHHHHHHhcccCCEEEEEchHHH
Confidence 7665543211 10 00 00122457787 45 8888888765321 11 2333344445677899999999999
Q ss_pred chhHHHHHHH-hcCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHH
Q 011106 226 DQIGFIYLKR-KLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALE 304 (493)
Q Consensus 226 e~~~~~~~~~-~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~ 304 (493)
|+++++.++. ...++++.|||+........ ........+++.+|||++++++||||||||...++.+++.+++.+|+
T Consensus 224 E~~~~~~~~~~~~~p~v~~VGPl~~~~~~~~--~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~ 301 (468)
T PLN02207 224 EPYSVNHFLDEQNYPSVYAVGPIFDLKAQPH--PEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLE 301 (468)
T ss_pred hHHHHHHHHhccCCCcEEEecCCcccccCCC--CccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHH
Confidence 9999988865 23368999999986431100 00001123679999999988899999999999999999999999999
Q ss_pred hCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCC
Q 011106 305 ASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGV 384 (493)
Q Consensus 305 ~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~Gv 384 (493)
.++++|||+++... .... +.+|++|.++.. ++..+++|+||.+||+|+++++|||||||||++||+++||
T Consensus 302 ~~~~~flW~~r~~~------~~~~-~~lp~~f~er~~---~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GV 371 (468)
T PLN02207 302 LCQYRFLWSLRTEE------VTND-DLLPEGFLDRVS---GRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGV 371 (468)
T ss_pred HCCCcEEEEEeCCC------cccc-ccCCHHHHhhcC---CCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCC
Confidence 99999999998431 0011 358899988764 5667789999999999999999999999999999999999
Q ss_pred cEecccccccchhhHHHHhhhhceeEEeecC----CCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhcc
Q 011106 385 PIIGWPMAAEQFFNAKFLEQEMGVCVEVARG----KTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDE 460 (493)
Q Consensus 385 P~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~----~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~ 460 (493)
|||++|+++||+.||+++++.||+|+.+..+ ....++.++|.++|+++|.+ ++++||+||+++++.+++|+
T Consensus 372 P~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~--~~~~~r~~a~~l~~~a~~A~--- 446 (468)
T PLN02207 372 PIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK--DNNVVRKRVMDISQMIQRAT--- 446 (468)
T ss_pred CEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHh---
Confidence 9999999999999999988777999987431 11346999999999999973 35699999999999999999
Q ss_pred ccCCCChHHHHHHHHHHHHhhc
Q 011106 461 EGCRGSSVKAMDDFLSAAISMK 482 (493)
Q Consensus 461 ~~~~g~~~~~~~~~~~~~~~~~ 482 (493)
.+||||.+++++++++++..+
T Consensus 447 -~~GGSS~~~l~~~v~~~~~~~ 467 (468)
T PLN02207 447 -KNGGSSFAAIEKFIHDVIGIK 467 (468)
T ss_pred -cCCCcHHHHHHHHHHHHHhcc
Confidence 999999999999999987654
No 17
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.6e-63 Score=499.59 Aligned_cols=447 Identities=26% Similarity=0.427 Sum_probs=341.6
Q ss_pred CCCcEEEEECCCCcccHHHHHHHHHHHHhcCCC----eEEEEEeCccchh----hhhccC----CCCCCceEEeccCCCC
Q 011106 3 QSKENIVMFPFMAQGHIIPFLALALHIEQRHKN----YSITFVSTPLNIK----KLKSSL----PPNSSIDLHEIPFNSS 70 (493)
Q Consensus 3 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~G----h~Vt~~~~~~~~~----~v~~~~----~~~~~i~~~~i~~~~~ 70 (493)
|.++||+|+|+|++||++|+++||+.|+. +| +.|||++++.+.. .+.... .....+.++.+|.+
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~--~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~-- 76 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLA--SSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAV-- 76 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHh--CCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCC--
Confidence 45789999999999999999999999998 86 8999999875422 222211 00025889998854
Q ss_pred CCCCCCCCCCCCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHH
Q 011106 71 SHGLPPNSENCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYG 150 (493)
Q Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~ 150 (493)
.++++.+. .. ..+......+.+.++++++++. .++++||+|.+..|+..+|+++|||++.|++++++.
T Consensus 77 --~~p~~~e~----~~---~~~~~~~~~~~~~l~~~L~~l~---~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~ 144 (480)
T PLN00164 77 --EPPTDAAG----VE---EFISRYIQLHAPHVRAAIAGLS---CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAM 144 (480)
T ss_pred --CCCCcccc----HH---HHHHHHHHhhhHHHHHHHHhcC---CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHH
Confidence 12322211 11 2233344567778888887762 247999999999999999999999999999999988
Q ss_pred HHHHhhhcccCCCC---CCC-CCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccc
Q 011106 151 LACYYSFWTNLPHN---KVT-SDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFD 226 (493)
Q Consensus 151 ~~~~~~~~~~~p~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le 226 (493)
++.+++........ ... .+.+.+|+++. ++..+++.+..... +.....+....+...+++++++|||.+||
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvNTf~eLE 219 (480)
T PLN00164 145 LALMLRLPALDEEVAVEFEEMEGAVDVPGLPP---VPASSLPAPVMDKK--SPNYAWFVYHGRRFMEAAGIIVNTAAELE 219 (480)
T ss_pred HHHHhhhhhhcccccCcccccCcceecCCCCC---CChHHCCchhcCCC--cHHHHHHHHHHHhhhhcCEEEEechHHhh
Confidence 88777653311100 000 12244778776 78888886544321 12223333334556778899999999999
Q ss_pred hhHHHHHHHhc------CCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHH
Q 011106 227 QIGFIYLKRKL------GLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLA 300 (493)
Q Consensus 227 ~~~~~~~~~~~------~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~ 300 (493)
+.+++.++... .++++.|||+....+. ......++++.+|||++++++||||||||+..++.+++.+++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~v~~vGPl~~~~~~-----~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela 294 (480)
T PLN00164 220 PGVLAAIADGRCTPGRPAPTVYPIGPVISLAFT-----PPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIA 294 (480)
T ss_pred HHHHHHHHhccccccCCCCceEEeCCCcccccc-----CCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHH
Confidence 99999997742 1579999999743211 001234578999999998899999999999889999999999
Q ss_pred HHHHhCCCcEEEEEcCCCC--C-CCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHH
Q 011106 301 MALEASGKNFIWVVRPPIG--F-DINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVL 377 (493)
Q Consensus 301 ~al~~~~~~vi~~~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~ 377 (493)
.+|+.++++|||+++.... . ...+.... ..+|++|.++++ ..++++.+|+||.+||+|+++++|||||||||++
T Consensus 295 ~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~-~~lp~~~~~~~~--~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~ 371 (480)
T PLN00164 295 AGLERSGHRFLWVLRGPPAAGSRHPTDADLD-ELLPEGFLERTK--GRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVL 371 (480)
T ss_pred HHHHHcCCCEEEEEcCCcccccccccccchh-hhCChHHHHHhc--CCCeEEeecCCHHHHhcCcccCeEEeecccchHH
Confidence 9999999999999985320 0 00000011 348899999888 8899999999999999999999999999999999
Q ss_pred HHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCC--CCccCHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHH
Q 011106 378 EALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGK--TCEVKHEDVVAKIELVMNETD-KGKEIRRKVSEVREMIK 454 (493)
Q Consensus 378 eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~--~~~~~~~~l~~ai~~~l~~~~-~~~~~~~~a~~l~~~~~ 454 (493)
||+++|||||++|+++||+.||+++++.||+|+.+...+ +..++.++|.++|+++|.+++ +|+.+|++|+++++.++
T Consensus 372 Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~ 451 (480)
T PLN00164 372 ESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACR 451 (480)
T ss_pred HHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999877789999986411 134799999999999998865 48899999999999999
Q ss_pred HhhhccccCCCChHHHHHHHHHHHHhhc
Q 011106 455 NAMKDEEGCRGSSVKAMDDFLSAAISMK 482 (493)
Q Consensus 455 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 482 (493)
+|+ .+||||.+++++|++++.+.+
T Consensus 452 ~a~----~~gGSS~~~l~~~v~~~~~~~ 475 (480)
T PLN00164 452 KAV----EEGGSSYAALQRLAREIRHGA 475 (480)
T ss_pred HHh----cCCCcHHHHHHHHHHHHHhcc
Confidence 999 999999999999999987543
No 18
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=8.8e-64 Score=494.07 Aligned_cols=436 Identities=28% Similarity=0.465 Sum_probs=327.6
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCC--eEEEE--EeCccchhhhh----ccCCCCCCceEEeccCCCCCCCCC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKN--YSITF--VSTPLNIKKLK----SSLPPNSSIDLHEIPFNSSSHGLP 75 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~G--h~Vt~--~~~~~~~~~v~----~~~~~~~~i~~~~i~~~~~~~~l~ 75 (493)
.+.||+++|+|++||++|+++||+.|+. +| +.||+ ++++.+...+. ......++++++.+|.+. ..+
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~--~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~~~ 76 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILS--KNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVT---PYS 76 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHh--CCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCC---CCC
Confidence 4789999999999999999999999999 88 45555 55544322211 111001468999988541 111
Q ss_pred CCCCCCCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHh
Q 011106 76 PNSENCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYY 155 (493)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~ 155 (493)
.+.. .. ......+......+.+.+.++++++. ..+++++||+|.+..|+..+|+++|||++.|++++++.++.++
T Consensus 77 ~~~~--~~--~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~ 151 (451)
T PLN03004 77 SSST--SR--HHHESLLLEILCFSNPSVHRTLFSLS-RNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSF 151 (451)
T ss_pred Cccc--cc--cCHHHHHHHHHHhhhHHHHHHHHhcC-CCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHH
Confidence 2111 11 11113344445567777888888762 1234699999999999999999999999999999999888777
Q ss_pred hhccc---CCCCC-CCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHH
Q 011106 156 SFWTN---LPHNK-VTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFI 231 (493)
Q Consensus 156 ~~~~~---~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~ 231 (493)
+.+.. .+... .+.....+|+++. ++..+++.+..... ......+.+......+++++++|||++||+.+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~v~iPg~p~---l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~ 226 (451)
T PLN03004 152 YLPTIDETTPGKNLKDIPTVHIPGVPP---MKGSDMPKAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIK 226 (451)
T ss_pred HHHhccccccccccccCCeecCCCCCC---CChHHCchhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHH
Confidence 64321 11111 0112245788876 78888887654321 2233444444455667889999999999999999
Q ss_pred HHHHhcC-CceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcE
Q 011106 232 YLKRKLG-LSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNF 310 (493)
Q Consensus 232 ~~~~~~~-~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~v 310 (493)
.++..+. ++++.|||++....... . ....+.++.+|||++++++||||||||+..++.+++++++.+|+.++++|
T Consensus 227 ~l~~~~~~~~v~~vGPl~~~~~~~~--~--~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~F 302 (451)
T PLN03004 227 AITEELCFRNIYPIGPLIVNGRIED--R--NDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRF 302 (451)
T ss_pred HHHhcCCCCCEEEEeeeccCccccc--c--ccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCE
Confidence 9977543 58999999974321000 0 01123569999999988999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEeccc
Q 011106 311 IWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWP 390 (493)
Q Consensus 311 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P 390 (493)
||+++.....+....... ..+|++|.++++ ..|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 303 lW~~r~~~~~~~~~~~~~-~~lp~gf~er~~--~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P 379 (451)
T PLN03004 303 LWVVRNPPELEKTELDLK-SLLPEGFLSRTE--DKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWP 379 (451)
T ss_pred EEEEcCCccccccccchh-hhCChHHHHhcc--CCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEecc
Confidence 999985310000000011 248899999998 89999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHH
Q 011106 391 MAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVK 469 (493)
Q Consensus 391 ~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~ 469 (493)
++.||+.||+++++.||+|+.++.++...++.++|+++|+++|.++ +||++|+++++..+.|+ .+||||.+
T Consensus 380 ~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~----~~r~~a~~~~~~a~~Av----~~GGSS~~ 450 (451)
T PLN03004 380 LYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGEC----PVRERTMAMKNAAELAL----TETGSSHT 450 (451)
T ss_pred ccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHh----cCCCCCCC
Confidence 9999999999999778999999752123579999999999999988 89999999999999999 99998864
No 19
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=9.7e-63 Score=494.44 Aligned_cols=435 Identities=27% Similarity=0.428 Sum_probs=332.8
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCC--CeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCC
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHK--NYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCD 82 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~--Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~ 82 (493)
+.||+++|+|++||++|+++||+.|+. + ||+|||++++.+...+.+...+ .+++|+.+|. +++.......
T Consensus 10 ~~hVvlvp~pa~GHi~P~l~LA~~L~~--~~~G~~VT~~~t~~~~~~i~~~~~~-~gi~fv~lp~-----~~p~~~~~~~ 81 (459)
T PLN02448 10 SCHVVAMPYPGRGHINPMMNLCKLLAS--RKPDILITFVVTEEWLGLIGSDPKP-DNIRFATIPN-----VIPSELVRAA 81 (459)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHc--CCCCcEEEEEeCCchHhHhhccCCC-CCEEEEECCC-----CCCCcccccc
Confidence 679999999999999999999999999 8 9999999999988777764221 4789998883 3443322111
Q ss_pred CCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhcccC-
Q 011106 83 VLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTNL- 161 (493)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~- 161 (493)
+ ....+....+.+.+.+.++++++. .++|+||+|.++.|+..+|+++|||++.++++++..+..+++.....
T Consensus 82 ~----~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~ 154 (459)
T PLN02448 82 D----FPGFLEAVMTKMEAPFEQLLDRLE---PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQ 154 (459)
T ss_pred C----HHHHHHHHHHHhHHHHHHHHHhcC---CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhh
Confidence 1 112222223456677778877653 34899999999999999999999999999999987776655443211
Q ss_pred ----CCCCCC-CCc--ccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHH
Q 011106 162 ----PHNKVT-SDE--FVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLK 234 (493)
Q Consensus 162 ----p~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~ 234 (493)
+..... .+. ..+|+++. ++..+++.++... .......+........++..+++|||.+||+.++++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~ 229 (459)
T PLN02448 155 NGHFPVELSESGEERVDYIPGLSS---TRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALK 229 (459)
T ss_pred ccCCCCccccccCCccccCCCCCC---CChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHH
Confidence 111100 111 13566655 6777777654322 12223344444455567789999999999999999998
Q ss_pred HhcCCceeeccccccccccccccCC-CCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEE
Q 011106 235 RKLGLSVWPVGPILLSLENRANAGK-EGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWV 313 (493)
Q Consensus 235 ~~~~~~~~~vGpl~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~ 313 (493)
..++++++.|||+............ .....+.++.+|++.++++++|||||||+...+.+++++++.+|+.++++|||+
T Consensus 230 ~~~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~ 309 (459)
T PLN02448 230 SKFPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWV 309 (459)
T ss_pred hhcCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 8777789999999753211000000 001123479999999888899999999998888999999999999999999998
Q ss_pred EcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccccc
Q 011106 314 VRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAA 393 (493)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~ 393 (493)
+.... .++.+.. ++|+.+++|+||.+||+|+++++|||||||||++||+++|||||++|++.
T Consensus 310 ~~~~~---------------~~~~~~~---~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~ 371 (459)
T PLN02448 310 ARGEA---------------SRLKEIC---GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFW 371 (459)
T ss_pred EcCch---------------hhHhHhc---cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccc
Confidence 76321 1222222 35778889999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHhhhhceeEEeecC--CCCccCHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHhhhccccCCCChHHH
Q 011106 394 EQFFNAKFLEQEMGVCVEVARG--KTCEVKHEDVVAKIELVMNET-DKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKA 470 (493)
Q Consensus 394 DQ~~na~~v~~~lG~G~~~~~~--~~~~~~~~~l~~ai~~~l~~~-~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~ 470 (493)
||+.||+++++.||+|+.+... ....+++++|+++|+++|.++ ++|++||+||+++++.+++|+ .+||||.++
T Consensus 372 DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~----~~gGss~~~ 447 (459)
T PLN02448 372 DQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAI----AKGGSSDTN 447 (459)
T ss_pred cchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh----cCCCcHHHH
Confidence 9999999999878999998641 123579999999999999874 578899999999999999999 999999999
Q ss_pred HHHHHHHHHhh
Q 011106 471 MDDFLSAAISM 481 (493)
Q Consensus 471 ~~~~~~~~~~~ 481 (493)
+++|++.+++.
T Consensus 448 l~~~v~~~~~~ 458 (459)
T PLN02448 448 LDAFIRDISQG 458 (459)
T ss_pred HHHHHHHHhcc
Confidence 99999998753
No 20
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5.2e-62 Score=490.78 Aligned_cols=441 Identities=27% Similarity=0.422 Sum_probs=325.5
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCC--eEEEEEeCccchhh-------hhccCCC-CCCceEEeccCCCCCCC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKN--YSITFVSTPLNIKK-------LKSSLPP-NSSIDLHEIPFNSSSHG 73 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~G--h~Vt~~~~~~~~~~-------v~~~~~~-~~~i~~~~i~~~~~~~~ 73 (493)
+|+||+++|+|++||++|+++||+.|+. +| ..|||++++.+... +.+.... ..+|+++.+|.+
T Consensus 1 ~~~hvvl~P~paqGHi~P~l~LAk~La~--~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~----- 73 (481)
T PLN02554 1 MKIELVFIPSPGIGHLRPTVELAKLLVD--SDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAG----- 73 (481)
T ss_pred CceEEEEeCCcchhhHHHHHHHHHHHHh--CCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCC-----
Confidence 4789999999999999999999999999 98 89999998876432 1111100 136899998854
Q ss_pred CCCCCCCCCCCChhhHHHHHHHHhhhhHHHHHHHHHhhc-----CCCCCcEEEECCcchhhHHHHHHcCCceEEEechhH
Q 011106 74 LPPNSENCDVLPYNLVIHLLRASTSLKPAFKEVISSLIN-----QGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGS 148 (493)
Q Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~ 148 (493)
.+... ... .+...+..+.+.+++.++++.. ++++.++||+|.++.|+..+|+.+|||++.|+++++
T Consensus 74 ~~~~~----~~~-----~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa 144 (481)
T PLN02554 74 DQPTT----EDP-----TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNA 144 (481)
T ss_pred CCCcc----cch-----HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcH
Confidence 11110 011 1222223334444444444321 122348999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCCC-----CC-CCC-CcccCCCCC-cccccChhhchhhhhccCCCCchhhhhhccccccccCceEEec
Q 011106 149 YGLACYYSFWTNLPH-----NK-VTS-DEFVLPDFE-EASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCN 220 (493)
Q Consensus 149 ~~~~~~~~~~~~~p~-----~~-~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 220 (493)
+.++.+++.+..... .. .+. ..+.+|+++ + ++..+++..... ..+...+.+......+++++++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~p---l~~~dlp~~~~~----~~~~~~~~~~~~~~~~~~gvlvN 217 (481)
T PLN02554 145 TFLGLQLHVQMLYDEKKYDVSELEDSEVELDVPSLTRP---YPVKCLPSVLLS----KEWLPLFLAQARRFREMKGILVN 217 (481)
T ss_pred HHHHHHHhhhhhccccccCccccCCCCceeECCCCCCC---CCHHHCCCcccC----HHHHHHHHHHHHhcccCCEEEEe
Confidence 998887765432111 00 011 224577763 3 666676654421 12233444455566788999999
Q ss_pred cccccchhHHHHHHHh--cCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHH
Q 011106 221 TIEEFDQIGFIYLKRK--LGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQ 298 (493)
Q Consensus 221 s~~~le~~~~~~~~~~--~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~ 298 (493)
||.+||+.+...+.+. ..++++.|||++....... ......++++.+||+++++++||||||||+..++.+++.+
T Consensus 218 t~~eLe~~~~~~l~~~~~~~~~v~~vGpl~~~~~~~~---~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~ 294 (481)
T PLN02554 218 TVAELEPQALKFFSGSSGDLPPVYPVGPVLHLENSGD---DSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQARE 294 (481)
T ss_pred chHHHhHHHHHHHHhcccCCCCEEEeCCCcccccccc---ccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHH
Confidence 9999999998888763 2268999999943221100 0012345689999999988899999999999899999999
Q ss_pred HHHHHHhCCCcEEEEEcCCCC--C-CC-CcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCch
Q 011106 299 LAMALEASGKNFIWVVRPPIG--F-DI-NSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWN 374 (493)
Q Consensus 299 i~~al~~~~~~vi~~~~~~~~--~-~~-~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~g 374 (493)
++.+|+.++++|||+++.... . +. ....+....+|++|.++.. +|+.+++|+||.+||+|+++++||||||||
T Consensus 295 la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~---~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~n 371 (481)
T PLN02554 295 IAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTK---DIGKVIGWAPQVAVLAKPAIGGFVTHCGWN 371 (481)
T ss_pred HHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhc---cCceEEeeCCHHHHhCCcccCcccccCccc
Confidence 999999999999999975310 0 00 0000000236888888774 566778999999999999999999999999
Q ss_pred hHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecC--------CCCccCHHHHHHHHHHHhc-CCchhHHHHHH
Q 011106 375 SVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARG--------KTCEVKHEDVVAKIELVMN-ETDKGKEIRRK 445 (493)
Q Consensus 375 s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~--------~~~~~~~~~l~~ai~~~l~-~~~~~~~~~~~ 445 (493)
|++||+++|||||++|+++||+.||+++.+.||+|+.+... ....++.++|.++|+++|. ++ +||+|
T Consensus 372 S~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~----~~r~~ 447 (481)
T PLN02554 372 SILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDS----DVRKR 447 (481)
T ss_pred hHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCH----HHHHH
Confidence 99999999999999999999999996644466999998631 1246899999999999996 55 89999
Q ss_pred HHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHhh
Q 011106 446 VSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAISM 481 (493)
Q Consensus 446 a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 481 (493)
|+++++.+++|+ .+|||+.+++++|+++++++
T Consensus 448 a~~l~~~~~~av----~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 448 VKEMSEKCHVAL----MDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HHHHHHHHHHHh----cCCChHHHHHHHHHHHHHhh
Confidence 999999999999 99999999999999999875
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.5e-60 Score=479.51 Aligned_cols=445 Identities=29% Similarity=0.449 Sum_probs=323.2
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCC---eEEEEEeCccch-----hhhhccCCCCCCceEEeccCCCCCCCCC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKN---YSITFVSTPLNI-----KKLKSSLPPNSSIDLHEIPFNSSSHGLP 75 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~G---h~Vt~~~~~~~~-----~~v~~~~~~~~~i~~~~i~~~~~~~~l~ 75 (493)
.+.||+++|+|++||++|+++||+.|+. +| +.||++++.... ..+........+|+|+.+|.+. .+
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~--~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~----~p 75 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLIN--LDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQ----DP 75 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHh--CCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCC----CC
Confidence 4679999999999999999999999999 88 457777754321 1122111101368999998541 12
Q ss_pred CCCCCCCCCChhhHHHHHHHHhhhhHHHHHHHHHhhc----CCC-CCcEEEECCcchhhHHHHHHcCCceEEEechhHHH
Q 011106 76 PNSENCDVLPYNLVIHLLRASTSLKPAFKEVISSLIN----QGR-PPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYG 150 (493)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~-~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~ 150 (493)
.+.+....... ..+......+.+.+++.++++.. ++. ++++||+|.+..|+..+|+++|||++.|++++++.
T Consensus 76 ~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~ 152 (475)
T PLN02167 76 PPMELFVKASE---AYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGF 152 (475)
T ss_pred ccccccccchH---HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHH
Confidence 11110011111 22333334555566666665431 122 46999999999999999999999999999999988
Q ss_pred HHHHhhhccc---CCCC--CCC-CCcccCCCCC-cccccChhhchhhhhccCCCCchhhhhhccccccccCceEEecccc
Q 011106 151 LACYYSFWTN---LPHN--KVT-SDEFVLPDFE-EASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIE 223 (493)
Q Consensus 151 ~~~~~~~~~~---~p~~--~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~ 223 (493)
++.+++.+.. .+.. ... .+.+.+|+++ . ++..+++.+.... . ....+.+......+++++++|||.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~---l~~~dlp~~~~~~---~-~~~~~~~~~~~~~~a~~vlvNTf~ 225 (475)
T PLN02167 153 LGMMKYLPERHRKTASEFDLSSGEEELPIPGFVNS---VPTKVLPPGLFMK---E-SYEAWVEIAERFPEAKGILVNSFT 225 (475)
T ss_pred HHHHHHHHHhccccccccccCCCCCeeECCCCCCC---CChhhCchhhhCc---c-hHHHHHHHHHhhcccCEeeeccHH
Confidence 8776654321 1100 001 1224577773 3 5666666544321 1 122333444556778899999999
Q ss_pred ccchhHHHHHHHhc--CCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHH
Q 011106 224 EFDQIGFIYLKRKL--GLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAM 301 (493)
Q Consensus 224 ~le~~~~~~~~~~~--~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~ 301 (493)
+||+.+++.++... -+++++|||+........ ........+++.+||+++++++||||||||+..++.+++.+++.
T Consensus 226 eLE~~~~~~l~~~~~~~p~v~~vGpl~~~~~~~~--~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~ 303 (475)
T PLN02167 226 ELEPNAFDYFSRLPENYPPVYPVGPILSLKDRTS--PNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQ 303 (475)
T ss_pred HHHHHHHHHHHhhcccCCeeEEeccccccccccC--CCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHH
Confidence 99999999886641 157999999976431100 00011123679999999988899999999998889999999999
Q ss_pred HHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHH
Q 011106 302 ALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALI 381 (493)
Q Consensus 302 al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~ 381 (493)
+|+.++++|||+++.+. ....... ..+|++|.++++ ..+ ++++|+||.+||+|+++++|||||||||++||++
T Consensus 304 ~l~~~~~~flw~~~~~~---~~~~~~~-~~lp~~~~er~~--~rg-~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~ 376 (475)
T PLN02167 304 ALELVGCRFLWSIRTNP---AEYASPY-EPLPEGFMDRVM--GRG-LVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLW 376 (475)
T ss_pred HHHhCCCcEEEEEecCc---ccccchh-hhCChHHHHHhc--cCe-eeeccCCHHHHhcCcccCeEEeeCCcccHHHHHH
Confidence 99999999999997531 0000001 348899988876 444 6669999999999999999999999999999999
Q ss_pred hCCcEecccccccchhhHHHHhhhhceeEEeecCC----CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q 011106 382 HGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGK----TCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAM 457 (493)
Q Consensus 382 ~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~----~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~ 457 (493)
+|||||++|+++||+.||+++.+.||+|+.+.... ...++.++|+++|+++|.++ +.||+||+++++.+++|+
T Consensus 377 ~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~---~~~r~~a~~~~~~~~~av 453 (475)
T PLN02167 377 FGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE---DVPRKKVKEIAEAARKAV 453 (475)
T ss_pred cCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988655779999986410 13579999999999999754 279999999999999999
Q ss_pred hccccCCCChHHHHHHHHHHHHh
Q 011106 458 KDEEGCRGSSVKAMDDFLSAAIS 480 (493)
Q Consensus 458 ~~~~~~~g~~~~~~~~~~~~~~~ 480 (493)
.+||||.+++++|+++++.
T Consensus 454 ----~~gGsS~~~l~~~v~~i~~ 472 (475)
T PLN02167 454 ----MDGGSSFVAVKRFIDDLLG 472 (475)
T ss_pred ----hCCCcHHHHHHHHHHHHHh
Confidence 9999999999999999875
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1e-48 Score=395.41 Aligned_cols=400 Identities=17% Similarity=0.200 Sum_probs=272.7
Q ss_pred cEEEEE-CCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCC-C-CCCC-CCCCC
Q 011106 6 ENIVMF-PFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSS-H-GLPP-NSENC 81 (493)
Q Consensus 6 ~~il~~-~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~-~-~l~~-~~~~~ 81 (493)
.||+.+ |.++.+|+.-+..|++.|++ |||+||++++.... ....... .+++.+.++...+. . .+.. .....
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~--rGH~VTvi~p~~~~-~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAE--RGHNVTVIKPTLRV-YYASHLC--GNITEIDASLSVEYFKKLVKSSAVFRK 95 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHH--cCCeEEEEeccccc-ccccCCC--CCEEEEEcCCChHHHHHHHhhhhHHHh
Confidence 467755 88999999999999999999 99999999865311 1111011 45665555421110 0 0000 00000
Q ss_pred -CCC--ChhhHHHHHHH-Hh-----hhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHc-CCceEEEechhHHHH
Q 011106 82 -DVL--PYNLVIHLLRA-ST-----SLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKEL-NVFHAIFSGSGSYGL 151 (493)
Q Consensus 82 -~~~--~~~~~~~~~~~-~~-----~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~l-giP~i~~~~~~~~~~ 151 (493)
... ........... .. ...+.+.++|++ +..++|+||+|.+..|+..+|+.+ ++|.|.+++......
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~---~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~ 172 (507)
T PHA03392 96 RGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN---KNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAE 172 (507)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc---CCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchh
Confidence 000 00000001111 11 112334455531 234599999999888999999999 999988877543321
Q ss_pred ----HH-HhhhcccCCCCCCC-CCcccCCCCCcccccChhhchhhhh-ccCCCCchhhhhhc----cccccccCceEEec
Q 011106 152 ----AC-YYSFWTNLPHNKVT-SDEFVLPDFEEASRIHKSQLALNML-EADGTDSWSLFQGE----NFPAWVNSNGILCN 220 (493)
Q Consensus 152 ----~~-~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~l~~ 220 (493)
.. .+.++.+.|...+. ++.|.+.++..+..........+.. ....+....+.+.. ..+...+.+.+++|
T Consensus 173 ~~~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~lvn 252 (507)
T PHA03392 173 NFETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLLFVN 252 (507)
T ss_pred HHHhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEEEEe
Confidence 12 33444566654433 3445555544432111111111110 00000111111111 11233456789999
Q ss_pred cccccchhHHHHHHHhcCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcC---CCHHHHH
Q 011106 221 TIEEFDQIGFIYLKRKLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNT---ISASQMM 297 (493)
Q Consensus 221 s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~---~~~~~~~ 297 (493)
+.+.++.+ +++++++++|||+..+... ..++++++.+|+++.+ +++|||||||+.. ++.+.++
T Consensus 253 s~~~~d~~------rp~~p~v~~vGgi~~~~~~-------~~~l~~~l~~fl~~~~-~g~V~vS~GS~~~~~~~~~~~~~ 318 (507)
T PHA03392 253 VHPVFDNN------RPVPPSVQYLGGLHLHKKP-------PQPLDDYLEEFLNNST-NGVVYVSFGSSIDTNDMDNEFLQ 318 (507)
T ss_pred cCccccCC------CCCCCCeeeecccccCCCC-------CCCCCHHHHHHHhcCC-CcEEEEECCCCCcCCCCCHHHHH
Confidence 99988854 4688999999999864310 2467899999998764 5799999999863 5788999
Q ss_pred HHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHH
Q 011106 298 QLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVL 377 (493)
Q Consensus 298 ~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~ 377 (493)
.+++|+++.+.+|||+++... .+.+. |+|+++.+|+||.+||+|+++++||||||+||++
T Consensus 319 ~~l~a~~~l~~~viw~~~~~~-------------~~~~~-------p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~ 378 (507)
T PHA03392 319 MLLRTFKKLPYNVLWKYDGEV-------------EAINL-------PANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTD 378 (507)
T ss_pred HHHHHHHhCCCeEEEEECCCc-------------CcccC-------CCceEEecCCCHHHHhcCCCCCEEEecCCcccHH
Confidence 999999999999999997542 11111 7899999999999999999999999999999999
Q ss_pred HHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 011106 378 EALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKN 455 (493)
Q Consensus 378 eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~ 455 (493)
||+++|||||++|+++||+.||+|++++ |+|+.+++ ..++.++|.++|+++|+|+ +|+++|+++++.+++
T Consensus 379 Eal~~GvP~v~iP~~~DQ~~Na~rv~~~-G~G~~l~~---~~~t~~~l~~ai~~vl~~~----~y~~~a~~ls~~~~~ 448 (507)
T PHA03392 379 EAIDALVPMVGLPMMGDQFYNTNKYVEL-GIGRALDT---VTVSAAQLVLAIVDVIENP----KYRKNLKELRHLIRH 448 (507)
T ss_pred HHHHcCCCEEECCCCccHHHHHHHHHHc-CcEEEecc---CCcCHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHh
Confidence 9999999999999999999999999977 99999998 8899999999999999999 999999999999983
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=3.9e-50 Score=413.24 Aligned_cols=393 Identities=22% Similarity=0.295 Sum_probs=236.0
Q ss_pred EEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCC-C--
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCD-V-- 83 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~-~-- 83 (493)
||+++|. ++||+.++..|++.|++ |||+||++++... ..+..... ..+++..++.....+.......... .
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~--rGH~VTvl~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAE--RGHNVTVLTPSPS-SSLNPSKP--SNIRFETYPDPYPEEEFEEIFPEFISKFF 75 (500)
T ss_dssp -----------SHHHHHHHHHHHHH--H-TTSEEEHHHHH-HT--------S-CCEEEE-----TT------TTHHHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHh--cCCceEEEEeecc-cccccccc--cceeeEEEcCCcchHHHhhhhHHHHHHHh
Confidence 6788884 88999999999999999 9999999986532 22332222 5566766664322222111111000 0
Q ss_pred ---CChhhHHHHHHHH----hhhh---------HHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechh
Q 011106 84 ---LPYNLVIHLLRAS----TSLK---------PAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSG 147 (493)
Q Consensus 84 ---~~~~~~~~~~~~~----~~~~---------~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~ 147 (493)
............. .... +.+.+.+++.+ +|++|+|.+..|+..+|+.+++|.+.+.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~-----fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~ 150 (500)
T PF00201_consen 76 SESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEK-----FDLVISDAFDPCGLALAHYLGIPVIIISSST 150 (500)
T ss_dssp HHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHH-----HCT-EEEEEESSHHHHHHHHHHTHHHHHHCC
T ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc-----cccceEeeccchhHHHHHHhcCCeEEEeccc
Confidence 0000000011111 1111 12223455555 9999999998899999999999998765432
Q ss_pred HHHH----H-HHhhhcccCCCCCCC-CCcccCCCCCcccccChh-hc-hhhhhccCCCCchhhhhh---ccccccccCce
Q 011106 148 SYGL----A-CYYSFWTNLPHNKVT-SDEFVLPDFEEASRIHKS-QL-ALNMLEADGTDSWSLFQG---ENFPAWVNSNG 216 (493)
Q Consensus 148 ~~~~----~-~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 216 (493)
+... . ....++.+.|...+. ++.+.+..+..+...... .+ ...+.. ..+....+... ...+.+.+...
T Consensus 151 ~~~~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 229 (500)
T PF00201_consen 151 PMYDLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFS-PQDKLYKKYFGFPFSFRELLSNASL 229 (500)
T ss_dssp SCSCCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGG-S-TTS-EEESS-GGGCHHHHHHHHH
T ss_pred ccchhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchh-hHHHHHhhhcccccccHHHHHHHHH
Confidence 2111 0 122344455543332 334555544332211111 11 111111 11111111111 11222334556
Q ss_pred EEeccccccchhHHHHHHHhcCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCC-CHHH
Q 011106 217 ILCNTIEEFDQIGFIYLKRKLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTI-SASQ 295 (493)
Q Consensus 217 ~l~~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~-~~~~ 295 (493)
+++|+.+.++ ++++ ++|++.+||++...+ ..++++++.+|++...++++|||||||+... +.+.
T Consensus 230 ~l~ns~~~ld-----~prp-~~p~v~~vGgl~~~~---------~~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~ 294 (500)
T PF00201_consen 230 VLINSHPSLD-----FPRP-LLPNVVEVGGLHIKP---------AKPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEK 294 (500)
T ss_dssp CCSSTEEE---------HH-HHCTSTTGCGC-S-------------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHH
T ss_pred HhhhccccCc-----CCcc-hhhcccccCcccccc---------ccccccccchhhhccCCCCEEEEecCcccchhHHHH
Confidence 7788887766 3344 447999999998765 3578899999999855688999999999754 4455
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchh
Q 011106 296 MMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNS 375 (493)
Q Consensus 296 ~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs 375 (493)
++.+++++++.+++|||++.+. .+..+ ++|+++++|+||.+||.|+++++||||||+||
T Consensus 295 ~~~~~~~~~~~~~~~iW~~~~~--------------~~~~l-------~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s 353 (500)
T PF00201_consen 295 LKEIAEAFENLPQRFIWKYEGE--------------PPENL-------PKNVLIVKWLPQNDLLAHPRVKLFITHGGLNS 353 (500)
T ss_dssp HHHHHHHHHCSTTEEEEEETCS--------------HGCHH-------HTTEEEESS--HHHHHTSTTEEEEEES--HHH
T ss_pred HHHHHHHHhhCCCccccccccc--------------ccccc-------cceEEEeccccchhhhhcccceeeeeccccch
Confidence 7889999999999999999753 12222 67999999999999999999999999999999
Q ss_pred HHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 011106 376 VLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKN 455 (493)
Q Consensus 376 ~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~ 455 (493)
++||+++|||||++|+++||+.||++++++ |+|+.++. ..+|.++|.++|+++|+|+ +|++||+++++.+++
T Consensus 354 ~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~-G~g~~l~~---~~~~~~~l~~ai~~vl~~~----~y~~~a~~ls~~~~~ 425 (500)
T PF00201_consen 354 TQEALYHGVPMLGIPLFGDQPRNAARVEEK-GVGVVLDK---NDLTEEELRAAIREVLENP----SYKENAKRLSSLFRD 425 (500)
T ss_dssp HHHHHHCT--EEE-GCSTTHHHHHHHHHHT-TSEEEEGG---GC-SHHHHHHHHHHHHHSH----HHHHHHHHHHHTTT-
T ss_pred hhhhhhccCCccCCCCcccCCccceEEEEE-eeEEEEEe---cCCcHHHHHHHHHHHHhhh----HHHHHHHHHHHHHhc
Confidence 999999999999999999999999999988 99999999 8999999999999999999 999999999999984
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.4e-43 Score=353.26 Aligned_cols=389 Identities=20% Similarity=0.218 Sum_probs=255.3
Q ss_pred ECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCChhhHH
Q 011106 11 FPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLPYNLVI 90 (493)
Q Consensus 11 ~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~ 90 (493)
+.+|+.||++|++.||++|.+ +||+|+|++++.+.+.+++ .++.+..++............ ........+.
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~--~Gh~V~~~~~~~~~~~v~~-----~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 71 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVA--RGHRVTYATTEEFAERVEA-----AGAEFVLYGSALPPPDNPPEN--TEEEPIDIIE 71 (392)
T ss_pred CCCCccccccccHHHHHHHHh--CCCeEEEEeCHHHHHHHHH-----cCCEEEecCCcCccccccccc--cCcchHHHHH
Confidence 357999999999999999999 9999999999999999999 566888777431111111110 0011111222
Q ss_pred HHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhcccCCCCCCCCCc
Q 011106 91 HLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTNLPHNKVTSDE 170 (493)
Q Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 170 (493)
.+......+...+.++++... ||+||+|.+++++..+|+.+|||+|.+++.+.... .+... ..|.. ...
T Consensus 72 ~~~~~~~~~~~~l~~~~~~~~-----pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~--~~~~~-~~~~~---~~~ 140 (392)
T TIGR01426 72 KLLDEAEDVLPQLEEAYKGDR-----PDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE--EFEEM-VSPAG---EGS 140 (392)
T ss_pred HHHHHHHHHHHHHHHHhcCCC-----CCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc--ccccc-ccccc---hhh
Confidence 233322333344444444444 99999999888999999999999999865432110 00000 00000 000
Q ss_pred ccC-CCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhcCCceeecccccc
Q 011106 171 FVL-PDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKLGLSVWPVGPILL 249 (493)
Q Consensus 171 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~vGpl~~ 249 (493)
... +............+..+.........-...+ . .......+..+ ++++.+.+..+|++++++||+..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~---~--~~~~~~~l~~~-----~~~l~~~~~~~~~~~~~~Gp~~~ 210 (392)
T TIGR01426 141 AEEGAIAERGLAEYVARLSALLEEHGITTPPVEFL---A--APRRDLNLVYT-----PKAFQPAGETFDDSFTFVGPCIG 210 (392)
T ss_pred hhhhccccchhHHHHHHHHHHHHHhCCCCCCHHHH---h--cCCcCcEEEeC-----ChHhCCCccccCCCeEEECCCCC
Confidence 000 0000000000000111111111000000000 0 00111122222 23333445678899999999876
Q ss_pred ccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcc
Q 011106 250 SLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRAS 329 (493)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~ 329 (493)
... +...|+...+++++||||+||+.......+..+++++.+.+.++||.++...
T Consensus 211 ~~~--------------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~----------- 265 (392)
T TIGR01426 211 DRK--------------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGV----------- 265 (392)
T ss_pred Ccc--------------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCC-----------
Confidence 531 1123666555678999999998766677888899999999999999987542
Q ss_pred cCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhcee
Q 011106 330 EWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVC 409 (493)
Q Consensus 330 ~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G 409 (493)
....+.. . ++|+.+.+|+||.++|+++++ ||||||+||++||+++|+|+|++|...||+.||+++++. |+|
T Consensus 266 --~~~~~~~--~--~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~-g~g 336 (392)
T TIGR01426 266 --DPADLGE--L--PPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAEL-GLG 336 (392)
T ss_pred --ChhHhcc--C--CCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHC-CCE
Confidence 0011100 1 679999999999999999886 999999999999999999999999999999999999966 999
Q ss_pred EEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHH
Q 011106 410 VEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAA 478 (493)
Q Consensus 410 ~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 478 (493)
+.+.. ..+++++|.++|+++|+|+ +|+++++++++.++ ..+| ...+++.|.+.+
T Consensus 337 ~~l~~---~~~~~~~l~~ai~~~l~~~----~~~~~~~~l~~~~~-------~~~~-~~~aa~~i~~~~ 390 (392)
T TIGR01426 337 RHLPP---EEVTAEKLREAVLAVLSDP----RYAERLRKMRAEIR-------EAGG-ARRAADEIEGFL 390 (392)
T ss_pred EEecc---ccCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHH-------HcCC-HHHHHHHHHHhh
Confidence 99987 7899999999999999999 89999999999998 5566 566666666544
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=4.4e-43 Score=351.37 Aligned_cols=374 Identities=13% Similarity=0.059 Sum_probs=240.4
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCC-CCCC-CC
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPN-SENC-DV 83 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~-~~~~-~~ 83 (493)
+||+|+++|+.||++|+++||++|++ +||+|+|++++.+...++. .+++|+.++........... .... ..
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~--rGh~V~~~t~~~~~~~v~~-----~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRA--AGHEVRVATPPEFADLVEA-----AGLEFVPVGGDPDELLASPERNAGLLLL 73 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHH--CCCeEEEeeCHhHHHHHHH-----cCCceeeCCCCHHHHHhhhhhccccccc
Confidence 58999999999999999999999999 9999999999999999988 56678777632100000000 0000 00
Q ss_pred CCh---hhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhccc
Q 011106 84 LPY---NLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTN 160 (493)
Q Consensus 84 ~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~ 160 (493)
... .....+......+...+.+.+++.. ||+||+|.+.+++..+|+.+|||++.+++++........++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~-- 146 (401)
T cd03784 74 GPGLLLGALRLLRREAEAMLDDLVAAARDWG-----PDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPPPL-- 146 (401)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----CCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCCcc--
Confidence 000 1112222223344444444444444 999999998888999999999999999876532111000000
Q ss_pred CCCCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccc-----cccCceEEeccccccchhHHHHHHH
Q 011106 161 LPHNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPA-----WVNSNGILCNTIEEFDQIGFIYLKR 235 (493)
Q Consensus 161 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~s~~~le~~~~~~~~~ 235 (493)
+..............+. ............+.... .......+....+.+ ....+
T Consensus 147 --------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 205 (401)
T cd03784 147 --------------GRANLRLYALLEAELWQ--DLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAV-----LPPPP 205 (401)
T ss_pred --------------chHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCccc-----CCCCC
Confidence 00000000000000000 00000000000000000 000111111111111 11234
Q ss_pred hcCCceeecc-ccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCC-HHHHHHHHHHHHhCCCcEEEE
Q 011106 236 KLGLSVWPVG-PILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTIS-ASQMMQLAMALEASGKNFIWV 313 (493)
Q Consensus 236 ~~~~~~~~vG-pl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~-~~~~~~i~~al~~~~~~vi~~ 313 (493)
.++++..++| ++...+. ....+.++..|++.. +++|||++||+.... ...+..++++++..+.++||+
T Consensus 206 ~~~~~~~~~g~~~~~~~~--------~~~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~ 275 (401)
T cd03784 206 DWPRFDLVTGYGFRDVPY--------NGPPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILS 275 (401)
T ss_pred CccccCcEeCCCCCCCCC--------CCCCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEE
Confidence 5667777775 3332221 123456778888664 669999999997644 467788999999999999999
Q ss_pred EcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccccc
Q 011106 314 VRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAA 393 (493)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~ 393 (493)
++... ... ... ++|+++.+|+||.++|+++++ ||||||+||++|++++|||+|++|+..
T Consensus 276 ~g~~~-------------~~~----~~~--~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~ 334 (401)
T cd03784 276 LGWGG-------------LGA----EDL--PDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFG 334 (401)
T ss_pred ccCcc-------------ccc----cCC--CCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCC
Confidence 98642 100 001 689999999999999999886 999999999999999999999999999
Q ss_pred cchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Q 011106 394 EQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIK 454 (493)
Q Consensus 394 DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~ 454 (493)
||+.||+++++. |+|+.+.. ..++.++|.++|+++|+++ +++++++.++.++
T Consensus 335 dQ~~~a~~~~~~-G~g~~l~~---~~~~~~~l~~al~~~l~~~-----~~~~~~~~~~~~~ 386 (401)
T cd03784 335 DQPFWAARVAEL-GAGPALDP---RELTAERLAAALRRLLDPP-----SRRRAAALLRRIR 386 (401)
T ss_pred CcHHHHHHHHHC-CCCCCCCc---ccCCHHHHHHHHHHHhCHH-----HHHHHHHHHHHHH
Confidence 999999999966 99999987 6789999999999999865 6667777777776
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-42 Score=340.02 Aligned_cols=395 Identities=19% Similarity=0.217 Sum_probs=252.9
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCC
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVL 84 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~ 84 (493)
+|||+|+..|++||++|+++||++|.+ +||+|+|++++.+.+.+++. ++.|..++.. +.... .......
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~--~gheV~~~~~~~~~~~ve~a-----g~~f~~~~~~---~~~~~-~~~~~~~ 69 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRR--RGHEVVFASTGKFKEFVEAA-----GLAFVAYPIR---DSELA-TEDGKFA 69 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHh--cCCeEEEEeCHHHHHHHHHh-----Ccceeecccc---CChhh-hhhhhhh
Confidence 479999999999999999999999999 99999999999999999994 4566666632 11111 0100111
Q ss_pred ChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhcccCCCC
Q 011106 85 PYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTNLPHN 164 (493)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~p~~ 164 (493)
..+.+......+.....++.+++.+.. ||+|+.|...+.+ .+++..++|++.......+...... .+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~e~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 138 (406)
T COG1819 70 GVKSFRRLLQQFKKLIRELLELLRELE-----PDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAG-----LPLP 138 (406)
T ss_pred ccchhHHHhhhhhhhhHHHHHHHHhcc-----hhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccc-----cCcc
Confidence 111111122333344456667777777 9999999766544 8999999999886555433222111 1111
Q ss_pred CCCC-CcccCCC--CCc-ccc-cChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhcCC
Q 011106 165 KVTS-DEFVLPD--FEE-ASR-IHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKLGL 239 (493)
Q Consensus 165 ~~~~-~~~~~~~--~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~ 239 (493)
.... +.+..+. ++. ... ..................+..........+.......+...+...++. ..+|.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~p~ 213 (406)
T COG1819 139 PVGIAGKLPIPLYPLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPG-----DRLPF 213 (406)
T ss_pred cccccccccccccccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCC-----CCCCC
Confidence 1110 1111111 110 000 000000000000000000000000000011111111111111111100 23455
Q ss_pred ceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCC
Q 011106 240 SVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIG 319 (493)
Q Consensus 240 ~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~ 319 (493)
...++||+.... ..++..|. ..++++||||+||.... .++++.++++++..+.+||+.++. .
T Consensus 214 ~~~~~~~~~~~~-------------~~~~~~~~--~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~- 275 (406)
T COG1819 214 IGPYIGPLLGEA-------------ANELPYWI--PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-A- 275 (406)
T ss_pred CcCccccccccc-------------cccCcchh--cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-c-
Confidence 667777776554 22333332 23467999999999876 889999999999999999999976 2
Q ss_pred CCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchhhH
Q 011106 320 FDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNA 399 (493)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na 399 (493)
+.. +. ++ |.|+.+.+|+||.++|+++++ ||||||+||++|||++|||+|++|...||+.||
T Consensus 276 -----~~~----~~-~~-------p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA 336 (406)
T COG1819 276 -----RDT----LV-NV-------PDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNA 336 (406)
T ss_pred -----ccc----cc-cC-------CCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHH
Confidence 000 11 11 789999999999999999997 999999999999999999999999999999999
Q ss_pred HHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHH
Q 011106 400 KFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAI 479 (493)
Q Consensus 400 ~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 479 (493)
.|+++. |+|..+.. ..++++.|+++|+++|+|+ .|+++++++++.++ ..+| ..++.+.|.+..+
T Consensus 337 ~rve~~-G~G~~l~~---~~l~~~~l~~av~~vL~~~----~~~~~~~~~~~~~~-------~~~g-~~~~a~~le~~~~ 400 (406)
T COG1819 337 ERVEEL-GAGIALPF---EELTEERLRAAVNEVLADD----SYRRAAERLAEEFK-------EEDG-PAKAADLLEEFAR 400 (406)
T ss_pred HHHHHc-CCceecCc---ccCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHhh-------hccc-HHHHHHHHHHHHh
Confidence 999966 99999998 8999999999999999999 99999999999998 5566 4344444444333
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=4e-41 Score=346.53 Aligned_cols=414 Identities=26% Similarity=0.405 Sum_probs=250.1
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceE---EeccCCCCCCCCCCCCCCC
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDL---HEIPFNSSSHGLPPNSENC 81 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~---~~i~~~~~~~~l~~~~~~~ 81 (493)
..+++++++|++||++|++.||+.|++ +||+||++++.......... .....+.. ...++....+.++...+..
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~--~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAE--RGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDD 81 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHH--cCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHH
Confidence 468899999999999999999999999 99999999988665554432 10011111 1111110011222221110
Q ss_pred CCCChhhHHHHHHHHhhhhHHHHHHHHHhh-cCCCCCcEEEECCcchhhHHHHHHcC-CceEEEechhHHHHHHHh-hhc
Q 011106 82 DVLPYNLVIHLLRASTSLKPAFKEVISSLI-NQGRPPLCIIADIFFGWTCGVAKELN-VFHAIFSGSGSYGLACYY-SFW 158 (493)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~pDlvI~D~~~~~~~~~A~~lg-iP~i~~~~~~~~~~~~~~-~~~ 158 (493)
. .............+...+.+.+.... ....++|++|+|.+..+...++.... ++...+.+.......... .+.
T Consensus 82 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~ 158 (496)
T KOG1192|consen 82 D---LDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPL 158 (496)
T ss_pred H---HHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcc
Confidence 0 00001111111222223333222222 11233999999998666666776664 888888777666544333 222
Q ss_pred ccCCCCCCC--CCcccCCCCCcccccChhhchhhhhccCCC----CchhhhhhccccccccCceEEecc-ccccchhHHH
Q 011106 159 TNLPHNKVT--SDEFVLPDFEEASRIHKSQLALNMLEADGT----DSWSLFQGENFPAWVNSNGILCNT-IEEFDQIGFI 231 (493)
Q Consensus 159 ~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~s-~~~le~~~~~ 231 (493)
.+.|..... .+.+.++++..+ +....++......... ...................++.++ +..+++..+.
T Consensus 159 ~~~p~~~~~~~~~~~~~~~~~~n--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~ 236 (496)
T KOG1192|consen 159 SYVPSPFSLSSGDDMSFPERVPN--LIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLL 236 (496)
T ss_pred cccCcccCccccccCcHHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCccc
Confidence 233333221 122333333221 1111222211111100 001111111111111122223333 4444443332
Q ss_pred HH-HHhcCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCc---CCCHHHHHHHHHHHHhC-
Q 011106 232 YL-KRKLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMN---TISASQMMQLAMALEAS- 306 (493)
Q Consensus 232 ~~-~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~---~~~~~~~~~i~~al~~~- 306 (493)
.. .....+++.+|||+.......+ .+++.++.++++.. .+++|||||||+. .++.+++..++.+++.+
T Consensus 237 ~~~~~~~~~~v~~IG~l~~~~~~~~------~~~~~~wl~~~~~~-~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~ 309 (496)
T KOG1192|consen 237 DFEPRPLLPKVIPIGPLHVKDSKQK------SPLPLEWLDILDES-RHSVVYISFGSMVNSADLPEEQKKELAKALESLQ 309 (496)
T ss_pred CCCCCCCCCCceEECcEEecCcccc------ccccHHHHHHHhhc-cCCeEEEECCcccccccCCHHHHHHHHHHHHhCC
Confidence 22 2224689999999998742100 01344444444332 2379999999998 79999999999999999
Q ss_pred CCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHh-hccCCcCceeeccCchhHHHHHHhCCc
Q 011106 307 GKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEV-LSHRATCAFLSHCGWNSVLEALIHGVP 385 (493)
Q Consensus 307 ~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~l-L~~~~v~~~I~HgG~gs~~eal~~GvP 385 (493)
+++|||++..+. . ..+++++.++ . +.||+..+|+||.++ |+|+++++|||||||||++|++++|||
T Consensus 310 ~~~FiW~~~~~~------~----~~~~~~~~~~-~--~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP 376 (496)
T KOG1192|consen 310 GVTFLWKYRPDD------S----IYFPEGLPNR-G--RGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVP 376 (496)
T ss_pred CceEEEEecCCc------c----hhhhhcCCCC-C--cCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCc
Confidence 889999998642 0 0022232211 1 568998899999998 599999999999999999999999999
Q ss_pred EecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Q 011106 386 IIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIK 454 (493)
Q Consensus 386 ~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~ 454 (493)
||++|+++||+.||++++++ |.|..+.. ..++...+.+++.+++.++ +|+++|+++++.++
T Consensus 377 ~v~~Plf~DQ~~Na~~i~~~-g~~~v~~~---~~~~~~~~~~~~~~il~~~----~y~~~~~~l~~~~~ 437 (496)
T KOG1192|consen 377 MVCVPLFGDQPLNARLLVRH-GGGGVLDK---RDLVSEELLEAIKEILENE----EYKEAAKRLSEILR 437 (496)
T ss_pred eecCCccccchhHHHHHHhC-CCEEEEeh---hhcCcHHHHHHHHHHHcCh----HHHHHHHHHHHHHH
Confidence 99999999999999999999 55555555 5676666999999999999 99999999999997
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=6.1e-26 Score=220.85 Aligned_cols=312 Identities=16% Similarity=0.138 Sum_probs=201.6
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchh--hhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCC
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIK--KLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDV 83 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~--~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~ 83 (493)
+||++.+.++-||++|.++||+.|.+ +||+|+|++.....+ .+.+ .++.++.++.. ++...
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~--~g~~v~~vg~~~~~e~~l~~~-----~g~~~~~~~~~----~l~~~------ 64 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKE--DNWDISYIGSHQGIEKTIIEK-----ENIPYYSISSG----KLRRY------ 64 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHh--CCCEEEEEECCCccccccCcc-----cCCcEEEEecc----CcCCC------
Confidence 57999999999999999999999999 999999999664322 2222 45677766631 22110
Q ss_pred CChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCc--chhhHHHHHHcCCceEEEechhHHHHHHHhhhcccC
Q 011106 84 LPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIF--FGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTNL 161 (493)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~--~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~ 161 (493)
...+.+..... +-...-....++++.+ ||+||+..- +.++..+|+.+++|+++.....
T Consensus 65 ~~~~~~~~~~~-~~~~~~~~~~i~~~~k-----Pdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~-------------- 124 (352)
T PRK12446 65 FDLKNIKDPFL-VMKGVMDAYVRIRKLK-----PDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM-------------- 124 (352)
T ss_pred chHHHHHHHHH-HHHHHHHHHHHHHhcC-----CCEEEecCchhhHHHHHHHHHcCCCEEEECCCC--------------
Confidence 01111111111 1223334556788888 999998743 2356789999999998875432
Q ss_pred CCCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhcC-Cc
Q 011106 162 PHNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKLG-LS 240 (493)
Q Consensus 162 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~-~~ 240 (493)
.+++.. +.+.+ .++ .++.+|++. ...++ .+
T Consensus 125 -----------~~g~~n-----------------------r~~~~------~a~-~v~~~f~~~--------~~~~~~~k 155 (352)
T PRK12446 125 -----------TPGLAN-----------------------KIALR------FAS-KIFVTFEEA--------AKHLPKEK 155 (352)
T ss_pred -----------CccHHH-----------------------HHHHH------hhC-EEEEEccch--------hhhCCCCC
Confidence 112111 00000 001 122233221 11222 47
Q ss_pred eeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCH-HHHHHHHHHHHhCCCcEEEEEcCCCC
Q 011106 241 VWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISA-SQMMQLAMALEASGKNFIWVVRPPIG 319 (493)
Q Consensus 241 ~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~-~~~~~i~~al~~~~~~vi~~~~~~~~ 319 (493)
+.++|+.+.+.-. ....+...+.+.-.+++++|+|..||...... +.+..++..+.. +.+++|.+|.+.
T Consensus 156 ~~~tG~Pvr~~~~--------~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~- 225 (352)
T PRK12446 156 VIYTGSPVREEVL--------KGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN- 225 (352)
T ss_pred eEEECCcCCcccc--------cccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch-
Confidence 8899987765410 01112222233333446799999999986443 334444444432 478999988641
Q ss_pred CCCCcchhcccCCchhHHHHhccCCCCeEEeecc-Ch-HHhhccCCcCceeeccCchhHHHHHHhCCcEeccccc-----
Q 011106 320 FDINSEFRASEWLPEGFEERIRDSKRGLLMKNWA-PQ-LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMA----- 392 (493)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~-pq-~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~----- 392 (493)
+..... . ..++.+..|+ ++ .++++++++ +|||||.+|+.|++++|+|+|++|+.
T Consensus 226 ------------~~~~~~-~----~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~ 286 (352)
T PRK12446 226 ------------LDDSLQ-N----KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASR 286 (352)
T ss_pred ------------HHHHHh-h----cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCC
Confidence 111010 0 1245566887 44 578999886 99999999999999999999999984
Q ss_pred ccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 393 AEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 393 ~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
.||..||+.+++. |+|..+.. ..++++.|.+++.++++|+
T Consensus 287 ~~Q~~Na~~l~~~-g~~~~l~~---~~~~~~~l~~~l~~ll~~~ 326 (352)
T PRK12446 287 GDQILNAESFERQ-GYASVLYE---EDVTVNSLIKHVEELSHNN 326 (352)
T ss_pred chHHHHHHHHHHC-CCEEEcch---hcCCHHHHHHHHHHHHcCH
Confidence 4899999999977 99999987 8899999999999999876
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.93 E-value=2.3e-24 Score=209.09 Aligned_cols=306 Identities=20% Similarity=0.224 Sum_probs=194.3
Q ss_pred cEEEEECCC-CcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCC
Q 011106 6 ENIVMFPFM-AQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVL 84 (493)
Q Consensus 6 ~~il~~~~~-~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~ 84 (493)
|||+|...+ +.||+.+++.||++| + ||+|+|++.....+.+.+ . +.+..++.. ........-.
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L-r---g~~v~~~~~~~~~~~~~~-----~-~~~~~~~~~------~~~~~~~~~~ 64 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL-R---GHEVTFITSGPAPEFLKP-----R-FPVREIPGL------GPIQENGRLD 64 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH-c---cCceEEEEcCCcHHHhcc-----c-cCEEEccCc------eEeccCCccc
Confidence 578888865 999999999999999 4 799999998877666654 2 355555421 1111111111
Q ss_pred ChhhHHH---HHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhcccC
Q 011106 85 PYNLVIH---LLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTNL 161 (493)
Q Consensus 85 ~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~ 161 (493)
....+.. +..........+.+++++.+ ||+||+|. .+.+..+|+..|||++.+........
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~---------- 128 (318)
T PF13528_consen 65 RWKTVRNNIRWLARLARRIRREIRWLREFR-----PDLVISDF-YPLAALAARRAGIPVIVISNQYWFLH---------- 128 (318)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-----CCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccc----------
Confidence 1111111 12223444555666777777 99999995 44477899999999999876542210
Q ss_pred CCCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhcccc--ccccCceEEeccccccchhHHHHHHHhcCC
Q 011106 162 PHNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFP--AWVNSNGILCNTIEEFDQIGFIYLKRKLGL 239 (493)
Q Consensus 162 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~s~~~le~~~~~~~~~~~~~ 239 (493)
+... .... ..+..+..+... ....+...+.-++. .. .....
T Consensus 129 ------------~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~--------~~~~~ 171 (318)
T PF13528_consen 129 ------------PNFW----LPWD------------QDFGRLIERYIDRYHFPPADRRLALSFY-PP--------LPPFF 171 (318)
T ss_pred ------------ccCC----cchh------------hhHHHHHHHhhhhccCCcccceecCCcc-cc--------ccccc
Confidence 0000 0000 000011111111 11122223333332 11 01113
Q ss_pred ceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCC-CcEEEEEcCCC
Q 011106 240 SVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASG-KNFIWVVRPPI 318 (493)
Q Consensus 240 ~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~-~~vi~~~~~~~ 318 (493)
++.++||+...... +.. ..+++.|+|++|..... .++++++..+ ..+++. +...
T Consensus 172 ~~~~~~p~~~~~~~----------------~~~--~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~ 226 (318)
T PF13528_consen 172 RVPFVGPIIRPEIR----------------ELP--PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA 226 (318)
T ss_pred cccccCchhccccc----------------ccC--CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc
Confidence 56688888765410 000 11345899999987532 6677777765 566665 4331
Q ss_pred CCCCCcchhcccCCchhHHHHhccCCCCeEEeecc--ChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccc--ccc
Q 011106 319 GFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWA--PQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPM--AAE 394 (493)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~--pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~--~~D 394 (493)
..+. .+|+.+.+|. ...++|+.+++ +|+|||+||++|++++|+|+|++|. ..+
T Consensus 227 ------------~~~~---------~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~E 283 (318)
T PF13528_consen 227 ------------ADPR---------PGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDE 283 (318)
T ss_pred ------------cccc---------CCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCch
Confidence 0111 6799998886 34779988886 9999999999999999999999999 789
Q ss_pred chhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHH
Q 011106 395 QFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELV 432 (493)
Q Consensus 395 Q~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~ 432 (493)
|..||+++++. |+|..+.. ..++++.|+++|+++
T Consensus 284 Q~~~a~~l~~~-G~~~~~~~---~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 284 QEYNARKLEEL-GLGIVLSQ---EDLTPERLAEFLERL 317 (318)
T ss_pred HHHHHHHHHHC-CCeEEccc---ccCCHHHHHHHHhcC
Confidence 99999999966 99999988 899999999998764
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=3.8e-22 Score=191.76 Aligned_cols=328 Identities=17% Similarity=0.180 Sum_probs=203.0
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCe-EEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCC
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNY-SITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVL 84 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh-~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~ 84 (493)
++|+++..++-||+.|.++|++.|.+ +|+ +|.++.+....+...... .++.++.++.. ++....
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~--~g~~~v~~~~~~~~~e~~l~~~---~~~~~~~I~~~----~~~~~~------ 65 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAK--RGWEQVIVLGTGDGLEAFLVKQ---YGIEFELIPSG----GLRRKG------ 65 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHh--hCccEEEEecccccceeeeccc---cCceEEEEecc----cccccC------
Confidence 46889999999999999999999999 999 577775543222211111 46777777742 222111
Q ss_pred ChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEEC--CcchhhHHHHHHcCCceEEEechhHHHHHHHhhhcccCC
Q 011106 85 PYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIAD--IFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTNLP 162 (493)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D--~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~p 162 (493)
....+... ........+.+.++++.+ ||+||.. +.+.++..+|..+|||.++.-+..
T Consensus 66 ~~~~~~~~-~~~~~~~~~a~~il~~~k-----Pd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~--------------- 124 (357)
T COG0707 66 SLKLLKAP-FKLLKGVLQARKILKKLK-----PDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNA--------------- 124 (357)
T ss_pred cHHHHHHH-HHHHHHHHHHHHHHHHcC-----CCEEEecCCccccHHHHHHHhCCCCEEEEecCC---------------
Confidence 01011111 111234456778899988 9999995 334477789999999999975432
Q ss_pred CCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhcCCcee
Q 011106 163 HNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKLGLSVW 242 (493)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~ 242 (493)
.+++.. ++..+. + ..+..+|+..+.- .-+.++.
T Consensus 125 ----------~~G~an-----------------------k~~~~~------a-~~V~~~f~~~~~~-------~~~~~~~ 157 (357)
T COG0707 125 ----------VPGLAN-----------------------KILSKF------A-KKVASAFPKLEAG-------VKPENVV 157 (357)
T ss_pred ----------CcchhH-----------------------HHhHHh------h-ceeeecccccccc-------CCCCceE
Confidence 222211 000000 0 0112233221100 0113467
Q ss_pred eccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCH-HHHHHHHHHHHhCCCcEEEEEcCCCCCC
Q 011106 243 PVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISA-SQMMQLAMALEASGKNFIWVVRPPIGFD 321 (493)
Q Consensus 243 ~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~-~~~~~i~~al~~~~~~vi~~~~~~~~~~ 321 (493)
.+|-.....- ...+..-..+.. ..++++|+|..||.....- +.+..++..+.+ +..+++.++.+.
T Consensus 158 ~tG~Pvr~~~---------~~~~~~~~~~~~-~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~--- 223 (357)
T COG0707 158 VTGIPVRPEF---------EELPAAEVRKDG-RLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND--- 223 (357)
T ss_pred EecCcccHHh---------hccchhhhhhhc-cCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch---
Confidence 7774333220 001111111111 1146799999999975332 233334444433 567888887541
Q ss_pred CCcchhcccCCchhHHHHhccCCCC-eEEeeccCh-HHhhccCCcCceeeccCchhHHHHHHhCCcEecccc-c---ccc
Q 011106 322 INSEFRASEWLPEGFEERIRDSKRG-LLMKNWAPQ-LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPM-A---AEQ 395 (493)
Q Consensus 322 ~~~~~~~~~~l~~~~~~~~~~~~~n-v~~~~~~pq-~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~-~---~DQ 395 (493)
.+....... ..+ +.+.+|.++ .++++.+++ +||++|.+|+.|++++|+|+|.+|. . .||
T Consensus 224 -----------~~~~~~~~~--~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q 288 (357)
T COG0707 224 -----------LEELKSAYN--ELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQ 288 (357)
T ss_pred -----------HHHHHHHHh--hcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchH
Confidence 112222221 233 788899988 568888886 9999999999999999999999997 3 389
Q ss_pred hhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 011106 396 FFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEV 449 (493)
Q Consensus 396 ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l 449 (493)
..||+.++++ |.|..++. .++|+++|.+.|.++++++++.+.|+++++++
T Consensus 289 ~~NA~~l~~~-gaa~~i~~---~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~ 338 (357)
T COG0707 289 EYNAKFLEKA-GAALVIRQ---SELTPEKLAELILRLLSNPEKLKAMAENAKKL 338 (357)
T ss_pred HHHHHHHHhC-CCEEEecc---ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999999989 99999998 88999999999999999874444444444443
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.89 E-value=1.1e-21 Score=189.73 Aligned_cols=305 Identities=16% Similarity=0.108 Sum_probs=171.5
Q ss_pred EEEEECCC-CcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCce-EEeccCCCCCCCCCCCCCCCCCC
Q 011106 7 NIVMFPFM-AQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSID-LHEIPFNSSSHGLPPNSENCDVL 84 (493)
Q Consensus 7 ~il~~~~~-~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~-~~~i~~~~~~~~l~~~~~~~~~~ 84 (493)
||++...+ +.||+.|.++||+.|.+ ||+|+|+++......+...+ +. +..++.. .-...... .
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~---g~ev~~~~~~~~~~~~~~~~-----~~~~~~~p~~------~~~~~~~~-~ 65 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN---DYEVSYIASGRSKNYISKYG-----FKVFETFPGI------KLKGEDGK-V 65 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC---CCeEEEEEcCCHHHhhhhhc-----CcceeccCCc------eEeecCCc-C
Confidence 57776655 66999999999999985 99999999887655555532 22 3222211 10000000 0
Q ss_pred ChhhHHHHHH--HH-hhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhcccC
Q 011106 85 PYNLVIHLLR--AS-TSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTNL 161 (493)
Q Consensus 85 ~~~~~~~~~~--~~-~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~ 161 (493)
.....+.. .+ ........+++++.+ ||+||+| +.+.+..+|+.+|||++.+..+....
T Consensus 66 --~~~~~l~~~~~~~~~~~~~~~~~l~~~~-----pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~----------- 126 (321)
T TIGR00661 66 --NIVKTLRNKEYSPKKAIRREINIIREYN-----PDLIISD-FEYSTVVAAKLLKIPVICISNQNYTR----------- 126 (321)
T ss_pred --cHHHHHHhhccccHHHHHHHHHHHHhcC-----CCEEEEC-CchHHHHHHHhcCCCEEEEecchhhc-----------
Confidence 01111110 11 123344567777777 9999999 56667899999999999876532110
Q ss_pred CCCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhcCCce
Q 011106 162 PHNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKLGLSV 241 (493)
Q Consensus 162 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~ 241 (493)
.++. .+ ...+.. ...+.... ..+....+..+..... ..|+..
T Consensus 127 -----------~~~~-----~~---~~~~~~--------~~~~~~~~---~~~~~~~~~~~~~~~~--------~~p~~~ 168 (321)
T TIGR00661 127 -----------YPLK-----TD---LIVYPT--------MAALRIFN---ERCERFIVPDYPFPYT--------ICPKII 168 (321)
T ss_pred -----------CCcc-----cc---hhHHHH--------HHHHHHhc---cccceEeeecCCCCCC--------CCcccc
Confidence 0100 00 000000 00000000 0111111222211110 001100
Q ss_pred e-eccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCC
Q 011106 242 W-PVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGF 320 (493)
Q Consensus 242 ~-~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~ 320 (493)
. ..+|... .....+... +++.|+|.+|+... ..+++++++.+. +.+.++...
T Consensus 169 ~~~~~~~~~----------------~~~~~~~~~--~~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~~-- 221 (321)
T TIGR00661 169 KNMEGPLIR----------------YDVDDVDNY--GEDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSYE-- 221 (321)
T ss_pred ccCCCcccc----------------hhhhccccC--CCCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCCC--
Confidence 0 0111111 112223221 23467777777531 345677777653 223322211
Q ss_pred CCCcchhcccCCchhHHHHhccCCCCeEEeeccC--hHHhhccCCcCceeeccCchhHHHHHHhCCcEecccccc--cch
Q 011106 321 DINSEFRASEWLPEGFEERIRDSKRGLLMKNWAP--QLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAA--EQF 396 (493)
Q Consensus 321 ~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~p--q~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~--DQ~ 396 (493)
...... ++|+.+.+|.| ..++|+.+++ +|||||++|++|++++|+|+|++|... ||.
T Consensus 222 ----------~~~~~~-------~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~ 282 (321)
T TIGR00661 222 ----------VAKNSY-------NENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQG 282 (321)
T ss_pred ----------CCcccc-------CCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHH
Confidence 011111 56888889997 3667788776 999999999999999999999999855 899
Q ss_pred hhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 397 FNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 397 ~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
.||+.+++. |+|+.++. ..+ ++.+++.+++.++
T Consensus 283 ~na~~l~~~-g~~~~l~~---~~~---~~~~~~~~~~~~~ 315 (321)
T TIGR00661 283 NNAVKLEDL-GCGIALEY---KEL---RLLEAILDIRNMK 315 (321)
T ss_pred HHHHHHHHC-CCEEEcCh---hhH---HHHHHHHhccccc
Confidence 999999977 99999987 544 6666777777777
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.84 E-value=4e-18 Score=168.11 Aligned_cols=344 Identities=15% Similarity=0.140 Sum_probs=201.3
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccc--hhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCC
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLN--IKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDV 83 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~--~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~ 83 (493)
+||+|+..+..||...++.||+.|.+ +||+|++++.+.. ...+++ .+++++.++.. ++... .
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~--~g~ev~vv~~~~~~~~~~~~~-----~g~~~~~~~~~----~~~~~-----~ 65 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKK--RGWEVLYLGTARGMEARLVPK-----AGIEFHFIPSG----GLRRK-----G 65 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHh--CCCEEEEEECCCchhhhcccc-----CCCcEEEEecc----CcCCC-----C
Confidence 78999998888999999999999999 9999999987642 122222 35666666632 11110 0
Q ss_pred CChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCc--chhhHHHHHHcCCceEEEechhHHHHHHHhhhcccC
Q 011106 84 LPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIF--FGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTNL 161 (493)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~--~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~ 161 (493)
....+.... ........+.+++++.+ ||+|++... .+.+..+++..++|++......
T Consensus 66 -~~~~l~~~~-~~~~~~~~~~~~ik~~~-----pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~-------------- 124 (357)
T PRK00726 66 -SLANLKAPF-KLLKGVLQARKILKRFK-----PDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA-------------- 124 (357)
T ss_pred -hHHHHHHHH-HHHHHHHHHHHHHHhcC-----CCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC--------------
Confidence 011111111 11233345666777777 999999952 3345567888899998642110
Q ss_pred CCCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhcCCce
Q 011106 162 PHNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKLGLSV 241 (493)
Q Consensus 162 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~ 241 (493)
.+++ ..++..+ .++.++.. .+. .+.. .-+.++
T Consensus 125 -----------~~~~-----------------------~~r~~~~------~~d~ii~~-~~~----~~~~---~~~~~i 156 (357)
T PRK00726 125 -----------VPGL-----------------------ANKLLAR------FAKKVATA-FPG----AFPE---FFKPKA 156 (357)
T ss_pred -----------CccH-----------------------HHHHHHH------HhchheEC-chh----hhhc---cCCCCE
Confidence 0000 0000000 11111111 110 0000 123677
Q ss_pred eeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCC--cEEEEEcCCCC
Q 011106 242 WPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGK--NFIWVVRPPIG 319 (493)
Q Consensus 242 ~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~--~vi~~~~~~~~ 319 (493)
.++|+....... .....-.. +...++.++|++..|+.. .......+.+++.+... .+++.+|...
T Consensus 157 ~vi~n~v~~~~~---------~~~~~~~~-~~~~~~~~~i~~~gg~~~--~~~~~~~l~~a~~~~~~~~~~~~~~G~g~- 223 (357)
T PRK00726 157 VVTGNPVREEIL---------ALAAPPAR-LAGREGKPTLLVVGGSQG--ARVLNEAVPEALALLPEALQVIHQTGKGD- 223 (357)
T ss_pred EEECCCCChHhh---------cccchhhh-ccCCCCCeEEEEECCcHh--HHHHHHHHHHHHHHhhhCcEEEEEcCCCc-
Confidence 888866543310 00000011 121223446666555542 12222334466665433 3455555431
Q ss_pred CCCCcchhcccCCchhHHHHhccCCCCeEEeeccCh-HHhhccCCcCceeeccCchhHHHHHHhCCcEecccc----ccc
Q 011106 320 FDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQ-LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPM----AAE 394 (493)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq-~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~----~~D 394 (493)
. +...+... .+-++.+.+|+.+ .++++.+++ +|+|+|.++++||+++|+|+|++|. ..+
T Consensus 224 ------------~-~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~ 287 (357)
T PRK00726 224 ------------L-EEVRAAYA-AGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDH 287 (357)
T ss_pred ------------H-HHHHHHhh-cCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCc
Confidence 1 11211111 0334888899854 789999887 9999999999999999999999997 468
Q ss_pred chhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHH
Q 011106 395 QFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDF 474 (493)
Q Consensus 395 Q~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~ 474 (493)
|..|+..+++. |.|..++. ..++++.|+++|.++++|+ +++++..+-+..+ ...++..+.++.+
T Consensus 288 ~~~~~~~i~~~-~~g~~~~~---~~~~~~~l~~~i~~ll~~~----~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 351 (357)
T PRK00726 288 QTANARALVDA-GAALLIPQ---SDLTPEKLAEKLLELLSDP----ERLEAMAEAARAL--------GKPDAAERLADLI 351 (357)
T ss_pred HHHHHHHHHHC-CCEEEEEc---ccCCHHHHHHHHHHHHcCH----HHHHHHHHHHHhc--------CCcCHHHHHHHHH
Confidence 99999999977 99999987 6778999999999999998 6655444444333 2333355666666
Q ss_pred HHHHH
Q 011106 475 LSAAI 479 (493)
Q Consensus 475 ~~~~~ 479 (493)
++.++
T Consensus 352 ~~~~~ 356 (357)
T PRK00726 352 EELAR 356 (357)
T ss_pred HHHhh
Confidence 55543
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.78 E-value=3.6e-16 Score=153.88 Aligned_cols=317 Identities=16% Similarity=0.127 Sum_probs=183.9
Q ss_pred EEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCh
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLPY 86 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~ 86 (493)
||++...++.||....+.||+.|.+ +||+|++++...... ...... .+++++.++.. ++... . ..
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~--~G~ev~v~~~~~~~~-~~~~~~--~~~~~~~~~~~----~~~~~-----~-~~ 65 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRE--RGAEVLFLGTKRGLE-ARLVPK--AGIPLHTIPVG----GLRRK-----G-SL 65 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHh--CCCEEEEEECCCcch-hhcccc--cCCceEEEEec----CcCCC-----C-hH
Confidence 5889999999999999999999999 999999998653211 111001 34666666642 11110 0 11
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCc--chhhHHHHHHcCCceEEEechhHHHHHHHhhhcccCCCC
Q 011106 87 NLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIF--FGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTNLPHN 164 (493)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~--~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~p~~ 164 (493)
..+..++.. -.....+..++++.+ ||+|++..- ..++..+++..++|++......
T Consensus 66 ~~~~~~~~~-~~~~~~~~~~i~~~~-----pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~----------------- 122 (350)
T cd03785 66 KKLKAPFKL-LKGVLQARKILKKFK-----PDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA----------------- 122 (350)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhcC-----CCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC-----------------
Confidence 111111111 123345666777766 999998742 3355678899999988632110
Q ss_pred CCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhcCCceeec
Q 011106 165 KVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKLGLSVWPV 244 (493)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~v 244 (493)
.+++ ...+. ...++.+++.+-...+ + ..+.++.++
T Consensus 123 --------~~~~-----------------------~~~~~------~~~~~~vi~~s~~~~~-----~---~~~~~~~~i 157 (350)
T cd03785 123 --------VPGL-----------------------ANRLL------ARFADRVALSFPETAK-----Y---FPKDKAVVT 157 (350)
T ss_pred --------CccH-----------------------HHHHH------HHhhCEEEEcchhhhh-----c---CCCCcEEEE
Confidence 0000 00000 0112223322211111 0 112567777
Q ss_pred cccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCH-HHHHHHHHHHHhCCCcEEEEEcCCCCCCCC
Q 011106 245 GPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISA-SQMMQLAMALEASGKNFIWVVRPPIGFDIN 323 (493)
Q Consensus 245 Gpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~-~~~~~i~~al~~~~~~vi~~~~~~~~~~~~ 323 (493)
|........ ..... ...+...+++.+|++..|+...... +.+..++..+...+..+++.++..
T Consensus 158 ~n~v~~~~~---------~~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g------ 221 (350)
T cd03785 158 GNPVREEIL---------ALDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG------ 221 (350)
T ss_pred CCCCchHHh---------hhhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc------
Confidence 765433210 00011 2222222334466666666532111 122223333333344455566543
Q ss_pred cchhcccCCchhHHHHhccCCCCeEEeecc-ChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccc----cccchhh
Q 011106 324 SEFRASEWLPEGFEERIRDSKRGLLMKNWA-PQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPM----AAEQFFN 398 (493)
Q Consensus 324 ~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~-pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~----~~DQ~~n 398 (493)
..+.+.+...+..+|+++.+|+ +..++|+.+++ +|+++|.+++.||+++|+|+|++|. ..+|..|
T Consensus 222 --------~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~ 291 (350)
T cd03785 222 --------DLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTAN 291 (350)
T ss_pred --------cHHHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHh
Confidence 1122222221113689999998 44779998887 9999999999999999999999986 4578899
Q ss_pred HHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 399 AKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 399 a~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
+..+.+. |.|..++. ...+.+++.++|+++++|+
T Consensus 292 ~~~l~~~-g~g~~v~~---~~~~~~~l~~~i~~ll~~~ 325 (350)
T cd03785 292 ARALVKA-GAAVLIPQ---EELTPERLAAALLELLSDP 325 (350)
T ss_pred HHHHHhC-CCEEEEec---CCCCHHHHHHHHHHHhcCH
Confidence 9999977 99999987 5579999999999999877
No 34
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.75 E-value=3.6e-16 Score=154.58 Aligned_cols=352 Identities=14% Similarity=0.099 Sum_probs=203.5
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCC
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVL 84 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~ 84 (493)
-+||++.+.++.||++|. +|+++|++ +|++|+|+.... ..+++.+.. ..+.+..++.- ++.
T Consensus 5 ~~ki~i~aGgtsGhi~pa-al~~~l~~--~~~~~~~~g~gg--~~m~~~g~~-~~~~~~~l~v~----G~~--------- 65 (385)
T TIGR00215 5 IPTIALVAGEASGDILGA-GLRQQLKE--HYPNARFIGVAG--PRMAAEGCE-VLYSMEELSVM----GLR--------- 65 (385)
T ss_pred CCeEEEEeCCccHHHHHH-HHHHHHHh--cCCCcEEEEEcc--HHHHhCcCc-cccChHHhhhc----cHH---------
Confidence 468999999999999999 99999999 999999997542 244553321 12223222210 110
Q ss_pred ChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEE-CCcchhhHH--HHHHcCCceEEEechhHHHHHHHhhhcccC
Q 011106 85 PYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIA-DIFFGWTCG--VAKELNVFHAIFSGSGSYGLACYYSFWTNL 161 (493)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~-D~~~~~~~~--~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~ 161 (493)
+.+.. ...+.....++.+++++.+ ||+||. |.-++.... +|+.+|||++.+.+-...
T Consensus 66 --~~l~~-~~~~~~~~~~~~~~l~~~k-----Pd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~w------------ 125 (385)
T TIGR00215 66 --EVLGR-LGRLLKIRKEVVQLAKQAK-----PDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVW------------ 125 (385)
T ss_pred --HHHHH-HHHHHHHHHHHHHHHHhcC-----CCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHh------------
Confidence 11122 2222234447777888888 999986 432333233 889999999876311000
Q ss_pred CCCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhcCCce
Q 011106 162 PHNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKLGLSV 241 (493)
Q Consensus 162 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~ 241 (493)
.+.. .+ .+.+.+ .++. ++.+++ .+... +. ..+.+.
T Consensus 126 -------------aw~~---~~-----------------~r~l~~------~~d~-v~~~~~-~e~~~---~~-~~g~~~ 160 (385)
T TIGR00215 126 -------------AWRK---WR-----------------AKKIEK------ATDF-LLAILP-FEKAF---YQ-KKNVPC 160 (385)
T ss_pred -------------hcCc---ch-----------------HHHHHH------HHhH-hhccCC-CcHHH---HH-hcCCCE
Confidence 0000 00 000111 1111 122232 22221 12 223466
Q ss_pred eeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhC-----CCcEEEEEcC
Q 011106 242 WPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEAS-----GKNFIWVVRP 316 (493)
Q Consensus 242 ~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~-----~~~vi~~~~~ 316 (493)
.++|....+.... .........+-+.-.+++++|.+-.||...--......+++++... +.++++....
T Consensus 161 ~~vGnPv~~~~~~------~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~ 234 (385)
T TIGR00215 161 RFVGHPLLDAIPL------YKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVN 234 (385)
T ss_pred EEECCchhhhccc------cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCC
Confidence 7888554332100 0011222333333333466888888887532123344455554432 3345554432
Q ss_pred CCCCCCCcchhcccCCchhH---HHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecc----
Q 011106 317 PIGFDINSEFRASEWLPEGF---EERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGW---- 389 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~---- 389 (493)
.. ..+.+ ..... ....+.+..+ +..++++.+++ +|+-+|..|+ |++++|+|+|++
T Consensus 235 ~~-------------~~~~~~~~~~~~~-~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~ 296 (385)
T TIGR00215 235 FK-------------RRLQFEQIKAEYG-PDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMK 296 (385)
T ss_pred ch-------------hHHHHHHHHHHhC-CCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCC
Confidence 21 11111 11111 0112332222 33568888886 9999999888 999999999999
Q ss_pred cccc---------cchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHh
Q 011106 390 PMAA---------EQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET----DKGKEIRRKVSEVREMIKNA 456 (493)
Q Consensus 390 P~~~---------DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~----~~~~~~~~~a~~l~~~~~~~ 456 (493)
|+.. +|..|+..++.+ ++...+.. ..+|++.|.+.+.++|.|+ +.-+.+++..+++++.+
T Consensus 297 pl~~~~~~~~~~~~~~~~~nil~~~-~~~pel~q---~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l--- 369 (385)
T TIGR00215 297 PLTFLIARRLVKTDYISLPNILANR-LLVPELLQ---EECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRI--- 369 (385)
T ss_pred HHHHHHHHHHHcCCeeeccHHhcCC-ccchhhcC---CCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHh---
Confidence 8632 378899999988 99999887 8899999999999999987 66667777777777777
Q ss_pred hhccccCCCChHHHHHHHHH
Q 011106 457 MKDEEGCRGSSVKAMDDFLS 476 (493)
Q Consensus 457 ~~~~~~~~g~~~~~~~~~~~ 476 (493)
.++|.+.++.+.+++
T Consensus 370 -----~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 370 -----YCNADSERAAQAVLE 384 (385)
T ss_pred -----cCCCHHHHHHHHHhh
Confidence 566667777776654
No 35
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.71 E-value=3.1e-15 Score=136.97 Aligned_cols=341 Identities=14% Similarity=0.143 Sum_probs=196.5
Q ss_pred CcEEEEEC--CCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCC
Q 011106 5 KENIVMFP--FMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCD 82 (493)
Q Consensus 5 ~~~il~~~--~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~ 82 (493)
.+||+|++ ..+.||...++.+|.+|++.-.|.+|++++......-+.- + .+++|+.+|.- .....+.....
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~---~-~gVd~V~LPsl---~k~~~G~~~~~ 81 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG---P-AGVDFVKLPSL---IKGDNGEYGLV 81 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC---c-ccCceEecCce---EecCCCceeee
Confidence 45999999 5799999999999999999333999999998744332221 1 68899999943 22222222221
Q ss_pred CCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhcccCC
Q 011106 83 VLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTNLP 162 (493)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~p 162 (493)
+...+ ..+....-..-+...++.++ ||++|+|.+-+ +. -.+.+ + ...+...
T Consensus 82 d~~~~----l~e~~~~Rs~lil~t~~~fk-----PDi~IVd~~P~-Gl-r~EL~----------p------tL~yl~~-- 132 (400)
T COG4671 82 DLDGD----LEETKKLRSQLILSTAETFK-----PDIFIVDKFPF-GL-RFELL----------P------TLEYLKT-- 132 (400)
T ss_pred ecCCC----HHHHHHHHHHHHHHHHHhcC-----CCEEEEecccc-ch-hhhhh----------H------HHHHHhh--
Confidence 21111 11112222334567777888 99999996544 21 11100 0 0000000
Q ss_pred CCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEecc---ccccchhHHHHHHHhcCC
Q 011106 163 HNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNT---IEEFDQIGFIYLKRKLGL 239 (493)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s---~~~le~~~~~~~~~~~~~ 239 (493)
.. +.. .-++ ...++.+......-.+......+.+.++ .+++-. |..++.. +. +.+..-.
T Consensus 133 -~~--t~~--vL~l-----r~i~D~p~~~~~~w~~~~~~~~I~r~yD------~V~v~GdP~f~d~~~~-~~-~~~~i~~ 194 (400)
T COG4671 133 -TG--TRL--VLGL-----RSIRDIPQELEADWRRAETVRLINRFYD------LVLVYGDPDFYDPLTE-FP-FAPAIRA 194 (400)
T ss_pred -cC--Ccc--eeeh-----HhhhhchhhhccchhhhHHHHHHHHhhe------EEEEecCccccChhhc-CC-ccHhhhh
Confidence 00 000 0000 0111111111111111112222222222 223222 2222211 00 1112236
Q ss_pred ceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHh-CCCc--EEEEEcC
Q 011106 240 SVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEA-SGKN--FIWVVRP 316 (493)
Q Consensus 240 ~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~-~~~~--vi~~~~~ 316 (493)
++.|+|.+ ..+ .. . .+.+.. | .+++..|.||-|.... -.+.+...++|... .+.+ .++++|.
T Consensus 195 k~~ytG~v-q~~-~~--~----~~~p~~---~---~pE~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~l~~~~~ivtGP 259 (400)
T COG4671 195 KMRYTGFV-QRS-LP--H----LPLPPH---E---APEGFDILVSVGGGAD-GAELIETALAAAQLLAGLNHKWLIVTGP 259 (400)
T ss_pred heeEeEEe-ecc-Cc--C----CCCCCc---C---CCccceEEEecCCChh-hHHHHHHHHHHhhhCCCCCcceEEEeCC
Confidence 89999988 221 00 0 001110 0 1234478898886643 34555556666555 4444 5555553
Q ss_pred CCCCCCCcchhcccCCchhHHHHhcc-CC--CCeEEeeccCh-HHhhccCCcCceeeccCchhHHHHHHhCCcEeccccc
Q 011106 317 PIGFDINSEFRASEWLPEGFEERIRD-SK--RGLLMKNWAPQ-LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMA 392 (493)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~~--~nv~~~~~~pq-~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~ 392 (493)
.+|.....+... ++ +++.+..|-.+ ..++..++. +|+-||+||++|-|++|+|.|++|..
T Consensus 260 --------------~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~ 323 (400)
T COG4671 260 --------------FMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRA 323 (400)
T ss_pred --------------CCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccC
Confidence 267665544332 24 78999999877 778888886 99999999999999999999999984
Q ss_pred ---ccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhc
Q 011106 393 ---AEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMN 434 (493)
Q Consensus 393 ---~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~ 434 (493)
.+|..-|+|++ +||+.-.+.+ ..+++..++++|...++
T Consensus 324 ~p~eEQliRA~Rl~-~LGL~dvL~p---e~lt~~~La~al~~~l~ 364 (400)
T COG4671 324 APREEQLIRAQRLE-ELGLVDVLLP---ENLTPQNLADALKAALA 364 (400)
T ss_pred CCcHHHHHHHHHHH-hcCcceeeCc---ccCChHHHHHHHHhccc
Confidence 48999999999 5599999999 99999999999999998
No 36
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.71 E-value=1.6e-15 Score=143.02 Aligned_cols=106 Identities=15% Similarity=0.177 Sum_probs=78.6
Q ss_pred CcEEEEeccCCcCCCHHHHHHHHHHHHhC--CCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccCh
Q 011106 278 NSVLYISFGSMNTISASQMMQLAMALEAS--GKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQ 355 (493)
Q Consensus 278 ~~~V~vs~GS~~~~~~~~~~~i~~al~~~--~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq 355 (493)
.+.|+|+||.... ......+++++... +.++.+++|... ...+.+..... ..+|+.+..|+++
T Consensus 170 ~~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~------------~~~~~l~~~~~-~~~~i~~~~~~~~ 234 (279)
T TIGR03590 170 LRRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSN------------PNLDELKKFAK-EYPNIILFIDVEN 234 (279)
T ss_pred cCeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCC------------cCHHHHHHHHH-hCCCEEEEeCHHH
Confidence 3579999996643 22445567777663 457778887652 12222222211 1458999999998
Q ss_pred H-HhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchhhHHH
Q 011106 356 L-EVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKF 401 (493)
Q Consensus 356 ~-~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~ 401 (493)
. ++|+.+++ +|++|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 235 m~~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 235 MAELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHHHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 5 89999997 999999 9999999999999999999999999975
No 37
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.71 E-value=1.4e-14 Score=142.38 Aligned_cols=77 Identities=25% Similarity=0.373 Sum_probs=67.4
Q ss_pred ChHHhhccCCcCceeeccCchhHHHHHHhCCcEeccccc---ccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHH
Q 011106 354 PQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMA---AEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIE 430 (493)
Q Consensus 354 pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~---~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~ 430 (493)
+-.++|+.+++ +|+++|.+++.||+++|+|+|++|.. .+|..|+..++.. |.|..++. ...++++|.+++.
T Consensus 243 ~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~~G~~~~~---~~~~~~~l~~~i~ 316 (348)
T TIGR01133 243 NMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-GAGLVIRQ---KELLPEKLLEALL 316 (348)
T ss_pred CHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-CCEEEEec---ccCCHHHHHHHHH
Confidence 45778999887 99999988999999999999999863 4678899999866 99999887 6678999999999
Q ss_pred HHhcCC
Q 011106 431 LVMNET 436 (493)
Q Consensus 431 ~~l~~~ 436 (493)
++++|+
T Consensus 317 ~ll~~~ 322 (348)
T TIGR01133 317 KLLLDP 322 (348)
T ss_pred HHHcCH
Confidence 999888
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.66 E-value=6.4e-14 Score=139.36 Aligned_cols=136 Identities=21% Similarity=0.322 Sum_probs=96.7
Q ss_pred CCcEEEEeccCCcCCCHHHHHHHHHHHHhC-CCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccCh
Q 011106 277 ENSVLYISFGSMNTISASQMMQLAMALEAS-GKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQ 355 (493)
Q Consensus 277 ~~~~V~vs~GS~~~~~~~~~~~i~~al~~~-~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq 355 (493)
++++|++..|+.... ..+..+++++.+. +.++++..+.+. .+.+.+.....+.++++++.+|+++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~------------~~~~~l~~~~~~~~~~v~~~g~~~~ 266 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNE------------ALKQSLEDLQETNPDALKVFGYVEN 266 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCH------------HHHHHHHHHHhcCCCcEEEEechhh
Confidence 355788877877532 2345566666653 566776665431 0112222222111458999999988
Q ss_pred -HHhhccCCcCceeeccCchhHHHHHHhCCcEecc-cccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHh
Q 011106 356 -LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGW-PMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVM 433 (493)
Q Consensus 356 -~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l 433 (493)
.++++.+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+++. |+|+.. -+.+++.++|.+++
T Consensus 267 ~~~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~-------~~~~~l~~~i~~ll 336 (380)
T PRK13609 267 IDELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVI-------RDDEEVFAKTEALL 336 (380)
T ss_pred HHHHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEE-------CCHHHHHHHHHHHH
Confidence 479999886 99999988999999999999985 6667778899988866 888754 26799999999999
Q ss_pred cCC
Q 011106 434 NET 436 (493)
Q Consensus 434 ~~~ 436 (493)
+|+
T Consensus 337 ~~~ 339 (380)
T PRK13609 337 QDD 339 (380)
T ss_pred CCH
Confidence 987
No 39
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.59 E-value=5.4e-13 Score=132.78 Aligned_cols=167 Identities=13% Similarity=0.215 Sum_probs=109.4
Q ss_pred CCcEEEEeccCCcCCCHHHHHHHHHHHHh--CCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccC
Q 011106 277 ENSVLYISFGSMNTISASQMMQLAMALEA--SGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAP 354 (493)
Q Consensus 277 ~~~~V~vs~GS~~~~~~~~~~~i~~al~~--~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~p 354 (493)
++++|++..|+... ...+..+++++.+ .+.+++++.|.+. .+.+.+.+... ..+++.+.+|.+
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~------------~l~~~l~~~~~-~~~~v~~~G~~~ 265 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK------------ELKRSLTAKFK-SNENVLILGYTK 265 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH------------HHHHHHHHHhc-cCCCeEEEeccc
Confidence 35688888888763 1334444454333 3456666665431 01122222211 135788889997
Q ss_pred h-HHhhccCCcCceeeccCchhHHHHHHhCCcEecc-cccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHH
Q 011106 355 Q-LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGW-PMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELV 432 (493)
Q Consensus 355 q-~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~ 432 (493)
+ .++++.+++ +|+..|..|+.||+++|+|+|+. |..+.|..|+..+++. |+|+... +.+++.++|.++
T Consensus 266 ~~~~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~-------~~~~l~~~i~~l 335 (391)
T PRK13608 266 HMNEWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD-------TPEEAIKIVASL 335 (391)
T ss_pred hHHHHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC-------CHHHHHHHHHHH
Confidence 7 568999887 99988888999999999999998 6666777899999977 9997642 788999999999
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHh
Q 011106 433 MNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAIS 480 (493)
Q Consensus 433 l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 480 (493)
++|++..+.++++++++. .. .+..+.++.+++.+..
T Consensus 336 l~~~~~~~~m~~~~~~~~-----------~~-~s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 336 TNGNEQLTNMISTMEQDK-----------IK-YATQTICRDLLDLIGH 371 (391)
T ss_pred hcCHHHHHHHHHHHHHhc-----------CC-CCHHHHHHHHHHHhhh
Confidence 988733223333333322 22 3345566666655543
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.58 E-value=4e-13 Score=133.75 Aligned_cols=353 Identities=13% Similarity=0.095 Sum_probs=176.6
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCC
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLP 85 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~ 85 (493)
+||+++..++.||+.|.+ +++.|++ +++++.++.... ..+++.+.+ ..+.++.++.. ++
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~--~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~l~~~----g~----------- 60 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKA--RAPNLEFVGVGG--PRMQAAGCE-SLFDMEELAVM----GL----------- 60 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHh--cCCCcEEEEEcc--HHHHhCCCc-cccCHHHhhhc----cH-----------
Confidence 589999999999999999 9999999 777777775332 123332221 12222222210 00
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCc-chhh--HHHHHHcCCceEEEechhHHHHHHHhhhcccCC
Q 011106 86 YNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIF-FGWT--CGVAKELNVFHAIFSGSGSYGLACYYSFWTNLP 162 (493)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~-~~~~--~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~p 162 (493)
.+.+ ......-.....+.+++++.+ ||+|+.-.+ ..+. +..++..|||++.+.....+.
T Consensus 61 ~~~~-~~~~~~~~~~~~~~~~l~~~k-----Pdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~~------------ 122 (380)
T PRK00025 61 VEVL-PRLPRLLKIRRRLKRRLLAEP-----PDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVWA------------ 122 (380)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHcC-----CCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchhh------------
Confidence 1111 111222334456778888888 999876422 2333 334778899988652211000
Q ss_pred CCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhcCCcee
Q 011106 163 HNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKLGLSVW 242 (493)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~ 242 (493)
+.+++ ... ....++.+++. ++. +.. .+. ..+.++.
T Consensus 123 ---------~~~~~-----------------------~~~-------~~~~~d~i~~~-~~~-~~~---~~~-~~g~~~~ 157 (380)
T PRK00025 123 ---------WRQGR-----------------------AFK-------IAKATDHVLAL-FPF-EAA---FYD-KLGVPVT 157 (380)
T ss_pred ---------cCchH-----------------------HHH-------HHHHHhhheeC-Ccc-CHH---HHH-hcCCCeE
Confidence 00000 000 00111222222 211 111 111 1223467
Q ss_pred eccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhC-----CCcEEEEEcCC
Q 011106 243 PVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEAS-----GKNFIWVVRPP 317 (493)
Q Consensus 243 ~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~-----~~~vi~~~~~~ 317 (493)
++|....+... .......+...+.-.+++++|.+..||...........++++++.. +.++++..+..
T Consensus 158 ~~G~p~~~~~~-------~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~ 230 (380)
T PRK00025 158 FVGHPLADAIP-------LLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNP 230 (380)
T ss_pred EECcCHHHhcc-------cccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCh
Confidence 77743322100 0011223333333223345666766765432122234455554432 34566665422
Q ss_pred CCCCCCcchhcccCCchhHHHHhccC-CCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEeccccc----
Q 011106 318 IGFDINSEFRASEWLPEGFEERIRDS-KRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMA---- 392 (493)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~---- 392 (493)
. ..+.+.....+. .-++.+.. -.-..+++.+++ +|+.+|.+++ |++++|+|+|++|-.
T Consensus 231 ~-------------~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~ 293 (380)
T PRK00025 231 K-------------RREQIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLT 293 (380)
T ss_pred h-------------hHHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHH
Confidence 1 111222212100 11333322 123678888887 9999999887 999999999998432
Q ss_pred --cc--chhh-----HHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccC
Q 011106 393 --AE--QFFN-----AKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGC 463 (493)
Q Consensus 393 --~D--Q~~n-----a~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~ 463 (493)
.+ |..| +..++.. +++..+.. ...++++|.+++.++++|++..+.++++++++.+.+ .
T Consensus 294 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~--------~- 360 (380)
T PRK00025 294 FWIAKRLVKVPYVSLPNLLAGR-ELVPELLQ---EEATPEKLARALLPLLADGARRQALLEGFTELHQQL--------R- 360 (380)
T ss_pred HHHHHHHHcCCeeehHHHhcCC-CcchhhcC---CCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--------C-
Confidence 11 2222 2334433 44444544 568999999999999999933334444444444333 1
Q ss_pred CCChHHHHHHHHHHHH
Q 011106 464 RGSSVKAMDDFLSAAI 479 (493)
Q Consensus 464 ~g~~~~~~~~~~~~~~ 479 (493)
.|+..+.++.+.+.+.
T Consensus 361 ~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 361 CGADERAAQAVLELLK 376 (380)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 2334555555555443
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.50 E-value=1.4e-15 Score=132.61 Aligned_cols=137 Identities=18% Similarity=0.231 Sum_probs=97.2
Q ss_pred EEEEeccCCcCCCH-HHHHHHHHHHHh--CCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccC-h
Q 011106 280 VLYISFGSMNTISA-SQMMQLAMALEA--SGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAP-Q 355 (493)
Q Consensus 280 ~V~vs~GS~~~~~~-~~~~~i~~al~~--~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~p-q 355 (493)
+|+|+.||.....- +.+..++..+.. ...+|++.+|... .... ... + .....++.+.+|.+ .
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~------~~~~---~~~-~----~~~~~~v~~~~~~~~m 66 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNN------YEEL---KIK-V----ENFNPNVKVFGFVDNM 66 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCE------CHHH---CCC-H----CCTTCCCEEECSSSSH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCc------HHHH---HHH-H----hccCCcEEEEechhhH
Confidence 48999998753111 112223333333 2578888888652 0000 000 1 00026899999999 6
Q ss_pred HHhhccCCcCceeeccCchhHHHHHHhCCcEecccccc----cchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHH
Q 011106 356 LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAA----EQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIEL 431 (493)
Q Consensus 356 ~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~----DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~ 431 (493)
.++++.+++ +|||||.||++|++++|+|+|++|... +|..||..+++. |+|..+.. ...+.+.|.++|.+
T Consensus 67 ~~~m~~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~---~~~~~~~L~~~i~~ 140 (167)
T PF04101_consen 67 AELMAAADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDE---SELNPEELAEAIEE 140 (167)
T ss_dssp HHHHHHHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSEC---CC-SCCCHHHHHHC
T ss_pred HHHHHHcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCc---ccCCHHHHHHHHHH
Confidence 889999997 999999999999999999999999988 999999999988 99999998 77889999999999
Q ss_pred HhcCC
Q 011106 432 VMNET 436 (493)
Q Consensus 432 ~l~~~ 436 (493)
+++++
T Consensus 141 l~~~~ 145 (167)
T PF04101_consen 141 LLSDP 145 (167)
T ss_dssp HCCCH
T ss_pred HHcCc
Confidence 99887
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.49 E-value=1.2e-11 Score=122.96 Aligned_cols=82 Identities=17% Similarity=0.215 Sum_probs=70.4
Q ss_pred CCCeEEeeccCh-HHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccch-hhHHHHhhhhceeEEeecCCCCccC
Q 011106 344 KRGLLMKNWAPQ-LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQF-FNAKFLEQEMGVCVEVARGKTCEVK 421 (493)
Q Consensus 344 ~~nv~~~~~~pq-~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~-~na~~v~~~lG~G~~~~~~~~~~~~ 421 (493)
..++++.+|+++ .++++.+++ +|+.+|-+|+.||+++|+|+|+.+....|. .|+..+.+. |.|+.+ -+
T Consensus 264 ~~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~-------~~ 333 (382)
T PLN02605 264 KIPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS-------ES 333 (382)
T ss_pred cCCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec-------CC
Confidence 346888899987 668888887 999999999999999999999998776776 699989877 998754 37
Q ss_pred HHHHHHHHHHHhcC
Q 011106 422 HEDVVAKIELVMNE 435 (493)
Q Consensus 422 ~~~l~~ai~~~l~~ 435 (493)
+++|.++|.+++++
T Consensus 334 ~~~la~~i~~ll~~ 347 (382)
T PLN02605 334 PKEIARIVAEWFGD 347 (382)
T ss_pred HHHHHHHHHHHHcC
Confidence 89999999999987
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.40 E-value=2.8e-10 Score=112.79 Aligned_cols=332 Identities=17% Similarity=0.102 Sum_probs=171.3
Q ss_pred CcccHHHHHHHHHHHHhcCCCeEEE---EEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCChhhHHH
Q 011106 15 AQGHIIPFLALALHIEQRHKNYSIT---FVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLPYNLVIH 91 (493)
Q Consensus 15 ~~GH~~p~l~LA~~L~~~~~Gh~Vt---~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (493)
++|-=.-.++||++|++..+|++|. ++++..-. ++...+..+ .+..+| .+...-. .....+..
T Consensus 6 ghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~---e~~~ip~~g-~~~~~~---------sgg~~~~-~~~~~~~~ 71 (396)
T TIGR03492 6 GHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAY---QNLGIPIIG-PTKELP---------SGGFSYQ-SLRGLLRD 71 (396)
T ss_pred CchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHH---hhCCCceeC-CCCCCC---------CCCccCC-CHHHHHHH
Confidence 3444455678999998754699999 99877432 221111012 222222 2211100 11111111
Q ss_pred HHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhcccCCCCCCCCCc-
Q 011106 92 LLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTNLPHNKVTSDE- 170 (493)
Q Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~- 170 (493)
+...+-...-+...+++++. .+||+||.-.-.. +..+|+..|+|++++.+.-... .+...+.. ...+.
T Consensus 72 ~~~gl~~~~~~~~~~~~~~~---~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~------~~~~~~~~-~~~~~~ 140 (396)
T TIGR03492 72 LRAGLVGLTLGQWRALRKWA---KKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDY------YWESGPRR-SPSDEY 140 (396)
T ss_pred HHhhHHHHHHHHHHHHHHHh---hcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccce------eecCCCCC-ccchhh
Confidence 22212223334445666661 2399999875444 7889999999999965542111 00100000 00000
Q ss_pred ccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhcCCceeeccccccc
Q 011106 171 FVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKLGLSVWPVGPILLS 250 (493)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~ 250 (493)
-..+|... .+ + + +..-..+.++.++ .+++ ... ++++ ..+.++.++|-.+.+
T Consensus 141 ~~~~G~~~---~p----------------~-e---~n~l~~~~a~~v~-~~~~-~t~---~~l~-~~g~k~~~vGnPv~d 191 (396)
T TIGR03492 141 HRLEGSLY---LP----------------W-E---RWLMRSRRCLAVF-VRDR-LTA---RDLR-RQGVRASYLGNPMMD 191 (396)
T ss_pred hccCCCcc---CH----------------H-H---HHHhhchhhCEEe-CCCH-HHH---HHHH-HCCCeEEEeCcCHHh
Confidence 01111110 11 1 0 0000111223322 2332 222 2222 233589999965554
Q ss_pred cccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhC----CCcEEEEEcCCCCCCCCcch
Q 011106 251 LENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEAS----GKNFIWVVRPPIGFDINSEF 326 (493)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~----~~~vi~~~~~~~~~~~~~~~ 326 (493)
.... .... . ++ +++++|.+--||-..--...+..+++++... +..|++.+.++.
T Consensus 192 ~l~~---------~~~~--~-l~--~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~-------- 249 (396)
T TIGR03492 192 GLEP---------PERK--P-LL--TGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL-------- 249 (396)
T ss_pred cCcc---------cccc--c-cC--CCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC--------
Confidence 4110 0000 1 12 2245888888887532223344555555553 567888774331
Q ss_pred hcccCCchhHHHHhcc-C---------------CCCeEEeeccCh-HHhhccCCcCceeeccCchhHHHHHHhCCcEecc
Q 011106 327 RASEWLPEGFEERIRD-S---------------KRGLLMKNWAPQ-LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGW 389 (493)
Q Consensus 327 ~~~~~l~~~~~~~~~~-~---------------~~nv~~~~~~pq-~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~ 389 (493)
..+.+.....+ + .+++.+..+..+ .++++.+++ +|+-+|..| .|+...|+|+|++
T Consensus 250 -----~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ili 321 (396)
T TIGR03492 250 -----SLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQL 321 (396)
T ss_pred -----CHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEE
Confidence 01111111100 0 123555566544 678998887 999999766 9999999999999
Q ss_pred cccccchhhHHHHhhh---hceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 390 PMAAEQFFNAKFLEQE---MGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 390 P~~~DQ~~na~~v~~~---lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
|.-..|. |+...++. +|.++.+.. .+.+.|.+++.++|+|+
T Consensus 322 p~~~~q~-na~~~~~~~~l~g~~~~l~~-----~~~~~l~~~l~~ll~d~ 365 (396)
T TIGR03492 322 PGKGPQF-TYGFAEAQSRLLGGSVFLAS-----KNPEQAAQVVRQLLADP 365 (396)
T ss_pred eCCCCHH-HHHHHHhhHhhcCCEEecCC-----CCHHHHHHHHHHHHcCH
Confidence 9766675 98776642 266666543 55699999999999987
No 44
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.31 E-value=9.8e-12 Score=104.85 Aligned_cols=121 Identities=18% Similarity=0.176 Sum_probs=82.4
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCh-
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLPY- 86 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~- 86 (493)
|+|++.|+.||++|+++||++|++ +||+|++++++.+.+.+++ .++.|+.++.. .....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~--rGh~V~~~~~~~~~~~v~~-----~Gl~~~~~~~~-------------~~~~~~ 60 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRR--RGHEVRLATPPDFRERVEA-----AGLEFVPIPGD-------------SRLPRS 60 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHH--TT-EEEEEETGGGHHHHHH-----TT-EEEESSSC-------------GGGGHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhc--cCCeEEEeecccceecccc-----cCceEEEecCC-------------cCcCcc
Confidence 789999999999999999999999 9999999999999999988 67899988842 00011
Q ss_pred -hhHHHHHHHHh--hhhHHHHHHHHHhhcC-------CCCCcEEEECCcchhhHHHHHHcCCceEEEechhH
Q 011106 87 -NLVIHLLRAST--SLKPAFKEVISSLINQ-------GRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGS 148 (493)
Q Consensus 87 -~~~~~~~~~~~--~~~~~l~~~l~~~~~~-------~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~ 148 (493)
.....+..... .....+.+.+.+.... ...+|+++.+.....+..+|+++|||++.....+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 61 LEPLANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred cchhhhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 01111111111 1222333344333311 12478888888777888999999999999876653
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.27 E-value=1.5e-08 Score=103.50 Aligned_cols=142 Identities=16% Similarity=0.170 Sum_probs=89.3
Q ss_pred EEEEeccCCcCCCHHHHHHHHHHHHhC-CCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHH-
Q 011106 280 VLYISFGSMNTISASQMMQLAMALEAS-GKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLE- 357 (493)
Q Consensus 280 ~V~vs~GS~~~~~~~~~~~i~~al~~~-~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~- 357 (493)
.+++..|++.. ...+..++++++.. +.+++ .+|... ..+.+..... ..+|.+.+++++.+
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~-ivG~G~-------------~~~~l~~~~~--~~~V~f~G~v~~~ev 325 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLA-FVGDGP-------------YREELEKMFA--GTPTVFTGMLQGDEL 325 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEE-EEeCCh-------------HHHHHHHHhc--cCCeEEeccCCHHHH
Confidence 45555687652 33455577777775 44544 344221 1222332333 46788889998644
Q ss_pred --hhccCCcCceeeccC----chhHHHHHHhCCcEecccccccchhhHHHHhh---hhceeEEeecCCCCccCHHHHHHH
Q 011106 358 --VLSHRATCAFLSHCG----WNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQ---EMGVCVEVARGKTCEVKHEDVVAK 428 (493)
Q Consensus 358 --lL~~~~v~~~I~HgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~---~lG~G~~~~~~~~~~~~~~~l~~a 428 (493)
+++.+++ ||.-.. -.++.||+++|+|+|+.... .....++. . +.|..++. -+.++++++
T Consensus 326 ~~~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~-----~d~~~la~~ 393 (465)
T PLN02871 326 SQAYASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTP-----GDVDDCVEK 393 (465)
T ss_pred HHHHHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCC-----CCHHHHHHH
Confidence 7777887 664332 34688999999999987543 23344443 4 67887765 478999999
Q ss_pred HHHHhcCCchhHHHHHHHHHHHH
Q 011106 429 IELVMNETDKGKEIRRKVSEVRE 451 (493)
Q Consensus 429 i~~~l~~~~~~~~~~~~a~~l~~ 451 (493)
|.++++|++.-+.+.+++++..+
T Consensus 394 i~~ll~~~~~~~~~~~~a~~~~~ 416 (465)
T PLN02871 394 LETLLADPELRERMGAAAREEVE 416 (465)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHH
Confidence 99999988444455666655443
No 46
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.27 E-value=5.3e-09 Score=102.94 Aligned_cols=93 Identities=13% Similarity=0.146 Sum_probs=68.3
Q ss_pred CCCeEEeeccChHH---hhccCCcCceeeccC----chhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCC
Q 011106 344 KRGLLMKNWAPQLE---VLSHRATCAFLSHCG----WNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGK 416 (493)
Q Consensus 344 ~~nv~~~~~~pq~~---lL~~~~v~~~I~HgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 416 (493)
..++.+..|+++.+ +++.+++ +|+.+. .+++.||+++|+|+|+.+.. .+...++.. +.|.....
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~~-~~g~~~~~-- 316 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTDG-ENGLLVEP-- 316 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcCC-cceEEcCC--
Confidence 67899999998755 7888886 776554 36899999999999987754 355566655 78887765
Q ss_pred CCccCHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 011106 417 TCEVKHEDVVAKIELVMNETDKGKEIRRKVSE 448 (493)
Q Consensus 417 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~ 448 (493)
-+.+++.+++.+++.|++.-+.+.+++++
T Consensus 317 ---~~~~~l~~~i~~l~~~~~~~~~~~~~~~~ 345 (364)
T cd03814 317 ---GDAEAFAAALAALLADPELRRRMAARARA 345 (364)
T ss_pred ---CCHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 57788999999999988333333333333
No 47
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.15 E-value=9.3e-08 Score=93.76 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=61.3
Q ss_pred CCCeEEeeccChHH---hhccCCcCceee----ccCch-hHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecC
Q 011106 344 KRGLLMKNWAPQLE---VLSHRATCAFLS----HCGWN-SVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARG 415 (493)
Q Consensus 344 ~~nv~~~~~~pq~~---lL~~~~v~~~I~----HgG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~ 415 (493)
..++.+..++++.+ +++.+++ +|. ..|++ ++.||+++|+|+|+.+. ......+... +.|..++.
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~- 313 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFPP- 313 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEECC-
Confidence 57899999997644 5888887 553 23444 78999999999998654 3456666644 57887765
Q ss_pred CCCccCHHHHHHHHHHHhcCC
Q 011106 416 KTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 416 ~~~~~~~~~l~~ai~~~l~~~ 436 (493)
-+.+++.+++.++++++
T Consensus 314 ----~d~~~l~~~i~~l~~~~ 330 (359)
T cd03823 314 ----GDAEDLAAALERLIDDP 330 (359)
T ss_pred ----CCHHHHHHHHHHHHhCh
Confidence 46899999999999988
No 48
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.15 E-value=6.9e-09 Score=92.93 Aligned_cols=136 Identities=19% Similarity=0.237 Sum_probs=100.4
Q ss_pred CcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccCh-H
Q 011106 278 NSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQ-L 356 (493)
Q Consensus 278 ~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq-~ 356 (493)
..-|+|++|..- +....-++++.+.+..+.+-+++++.. . -+.....++.. .+++.+...... .
T Consensus 158 ~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~-----------p-~l~~l~k~~~~-~~~i~~~~~~~dma 222 (318)
T COG3980 158 KRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSN-----------P-TLKNLRKRAEK-YPNINLYIDTNDMA 222 (318)
T ss_pred hheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCC-----------c-chhHHHHHHhh-CCCeeeEecchhHH
Confidence 346999999543 456777789999888877777777442 1 11222222110 456666666664 5
Q ss_pred HhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 357 EVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 357 ~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
.|+..++. .|+-||. |+.|++.-|+|.+++|+..-|.--|...+.. |+-..+.. .+......--+.++..|.
T Consensus 223 ~LMke~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~l-g~~~~l~~----~l~~~~~~~~~~~i~~d~ 294 (318)
T COG3980 223 ELMKEADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEAL-GIIKQLGY----HLKDLAKDYEILQIQKDY 294 (318)
T ss_pred HHHHhcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhc-CchhhccC----CCchHHHHHHHHHhhhCH
Confidence 58888885 8887775 8999999999999999999999999999955 88888775 377888888888898888
No 49
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.12 E-value=4e-08 Score=98.32 Aligned_cols=94 Identities=11% Similarity=0.123 Sum_probs=67.3
Q ss_pred CCCeEEeeccChHH---hhccCCcCceeecc---C-chhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCC
Q 011106 344 KRGLLMKNWAPQLE---VLSHRATCAFLSHC---G-WNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGK 416 (493)
Q Consensus 344 ~~nv~~~~~~pq~~---lL~~~~v~~~I~Hg---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 416 (493)
.+++.+.+|+|+.+ +++.+++ +|+.+ | -.++.||+++|+|+|+.... .....++.. +.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~-~~g~~~~~-- 352 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDG-VTGLLVDP-- 352 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCC-CCeEEeCC--
Confidence 46899999999865 5788886 66432 2 35899999999999987643 355556644 68888765
Q ss_pred CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 011106 417 TCEVKHEDVVAKIELVMNETDKGKEIRRKVSEV 449 (493)
Q Consensus 417 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l 449 (493)
-+.+++.++|.+++++++..+.+.++|++.
T Consensus 353 ---~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~ 382 (398)
T cd03800 353 ---RDPEALAAALRRLLTDPALRRRLSRAGLRR 382 (398)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 479999999999998873333444444443
No 50
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.08 E-value=9.7e-08 Score=96.01 Aligned_cols=92 Identities=12% Similarity=0.237 Sum_probs=63.1
Q ss_pred CCeEEe-eccChHH---hhccCCcCceee-c---cC---chhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEee
Q 011106 345 RGLLMK-NWAPQLE---VLSHRATCAFLS-H---CG---WNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVA 413 (493)
Q Consensus 345 ~nv~~~-~~~pq~~---lL~~~~v~~~I~-H---gG---~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~ 413 (493)
+++++. .|+|..+ +|+.+++ +|. + -| -+.+.||+++|+|+|+... ......++.. +.|..+
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~-~~G~lv- 365 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKHG-ENGLVF- 365 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCC-CCEEEE-
Confidence 466654 5887644 5788887 542 1 12 3369999999999998643 3555666644 678765
Q ss_pred cCCCCccCHHHHHHHHHHHhcC---CchhHHHHHHHHHHH
Q 011106 414 RGKTCEVKHEDVVAKIELVMNE---TDKGKEIRRKVSEVR 450 (493)
Q Consensus 414 ~~~~~~~~~~~l~~ai~~~l~~---~~~~~~~~~~a~~l~ 450 (493)
. +.++++++|.++++| ++..+.|++++++..
T Consensus 366 ~------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 366 G------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred C------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 2 689999999999998 644555666665554
No 51
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.05 E-value=2.5e-07 Score=91.13 Aligned_cols=97 Identities=10% Similarity=0.165 Sum_probs=67.9
Q ss_pred CCCeEEeeccChHH---hhccCCcCceeec----cCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCC
Q 011106 344 KRGLLMKNWAPQLE---VLSHRATCAFLSH----CGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGK 416 (493)
Q Consensus 344 ~~nv~~~~~~pq~~---lL~~~~v~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 416 (493)
.+++.+.+++|+.+ +++.+++ +|.. |...++.||+++|+|+|+.. ....+..+... +.|..++.
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i~~~-~~g~~~~~-- 328 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLVADG-ENGFLFPP-- 328 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeC----CCChhhheecC-ceeEEeCC--
Confidence 56899999998754 6788887 5533 33468999999999999865 34456666654 67877765
Q ss_pred CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 011106 417 TCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMI 453 (493)
Q Consensus 417 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~ 453 (493)
. +. ++.+++.+++++++..+.+.+++++..+..
T Consensus 329 -~--~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 361 (374)
T cd03817 329 -G--DE-ALAEALLRLLQDPELRRRLSKNAEESAEKF 361 (374)
T ss_pred -C--CH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 2 22 899999999998843334555555554443
No 52
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.05 E-value=7.8e-08 Score=93.98 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=65.1
Q ss_pred CCCeEEeeccCh-HHhhccCCcCceeeccC----chhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCC
Q 011106 344 KRGLLMKNWAPQ-LEVLSHRATCAFLSHCG----WNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTC 418 (493)
Q Consensus 344 ~~nv~~~~~~pq-~~lL~~~~v~~~I~HgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 418 (493)
..+|.+.++..+ ..+++.+++ +|.-+. -+++.||+++|+|+|+.+.. .....+... +.|..++.
T Consensus 245 ~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~-~~g~~~~~---- 313 (359)
T cd03808 245 EGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDG-VNGFLVPP---- 313 (359)
T ss_pred cceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcC-cceEEECC----
Confidence 467887777554 668888887 654332 56899999999999986543 344555534 67877754
Q ss_pred ccCHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 011106 419 EVKHEDVVAKIELVMNETDKGKEIRRKVSEV 449 (493)
Q Consensus 419 ~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l 449 (493)
-+.+++.++|.+++.+++..+.+.+++++.
T Consensus 314 -~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03808 314 -GDAEALADAIERLIEDPELRARMGQAARKR 343 (359)
T ss_pred -CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 478999999999999883333444444443
No 53
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.05 E-value=1.2e-07 Score=93.77 Aligned_cols=96 Identities=16% Similarity=0.175 Sum_probs=66.1
Q ss_pred CCCeEEeeccChHH---hhccCCcCceeeccC---------chhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEE
Q 011106 344 KRGLLMKNWAPQLE---VLSHRATCAFLSHCG---------WNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVE 411 (493)
Q Consensus 344 ~~nv~~~~~~pq~~---lL~~~~v~~~I~HgG---------~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~ 411 (493)
.+++.+..++++.+ +++.+++ +|.... -+++.||+++|+|+|+.+..+.+.. +... +.|..
T Consensus 274 ~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~----~~~~-~~g~~ 346 (394)
T cd03794 274 LDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAEL----VEEA-GAGLV 346 (394)
T ss_pred CCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhh----hccC-CcceE
Confidence 57899989998654 6777887 553322 2237999999999999887654443 3323 56777
Q ss_pred eecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 011106 412 VARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVRE 451 (493)
Q Consensus 412 ~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~ 451 (493)
++. -+.+++.++|.++++|++..+.+++++++...
T Consensus 347 ~~~-----~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T cd03794 347 VPP-----GDPEALAAAILELLDDPEERAEMGENGRRYVE 381 (394)
T ss_pred eCC-----CCHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 664 48899999999999888444444444444433
No 54
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.04 E-value=2.7e-07 Score=90.41 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=62.5
Q ss_pred CCCeEEeeccCh---HHhhccCCcCceee----ccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCC
Q 011106 344 KRGLLMKNWAPQ---LEVLSHRATCAFLS----HCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGK 416 (493)
Q Consensus 344 ~~nv~~~~~~pq---~~lL~~~~v~~~I~----HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 416 (493)
..++.+.+++++ ..++..+++ +|. -|.-+++.||+++|+|+|+.+. ......+... +.|...+.
T Consensus 255 ~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~-- 325 (374)
T cd03801 255 GDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPP-- 325 (374)
T ss_pred CcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCC--
Confidence 678999999975 447788886 553 2456689999999999998765 4455666645 77877765
Q ss_pred CCccCHHHHHHHHHHHhcCC
Q 011106 417 TCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 417 ~~~~~~~~l~~ai~~~l~~~ 436 (493)
.+.+++.+++.++++++
T Consensus 326 ---~~~~~l~~~i~~~~~~~ 342 (374)
T cd03801 326 ---GDPEALAEAILRLLDDP 342 (374)
T ss_pred ---CCHHHHHHHHHHHHcCh
Confidence 46899999999999988
No 55
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.04 E-value=1.9e-07 Score=92.58 Aligned_cols=94 Identities=17% Similarity=0.111 Sum_probs=65.9
Q ss_pred CCCeEEeeccCh-HHhhccCCcCceee----ccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCC
Q 011106 344 KRGLLMKNWAPQ-LEVLSHRATCAFLS----HCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTC 418 (493)
Q Consensus 344 ~~nv~~~~~~pq-~~lL~~~~v~~~I~----HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 418 (493)
.+++.+.++.++ .+++..+++ +|. -|.-.++.||+++|+|+|+.. ....+..++.. ..|..++.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~----~~~~~e~i~~~-~~G~~~~~---- 320 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASN----AGGIPEVVKHG-ETGFLVDV---- 320 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeC----CCCchhhhcCC-CceEEcCC----
Confidence 356888888776 668888887 552 233459999999999999854 34456666543 46766654
Q ss_pred ccCHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 011106 419 EVKHEDVVAKIELVMNETDKGKEIRRKVSEV 449 (493)
Q Consensus 419 ~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l 449 (493)
-+.+++.+++.+++++++..+++++++++.
T Consensus 321 -~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 350 (371)
T cd04962 321 -GDVEAMAEYALSLLEDDELWQEFSRAARNR 350 (371)
T ss_pred -CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 478999999999999874444455555554
No 56
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.95 E-value=4.9e-08 Score=96.61 Aligned_cols=85 Identities=15% Similarity=0.163 Sum_probs=61.5
Q ss_pred CCCeEEeeccChH---HhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCcc
Q 011106 344 KRGLLMKNWAPQL---EVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEV 420 (493)
Q Consensus 344 ~~nv~~~~~~pq~---~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~ 420 (493)
.+++++.+.+++. .+++.+++ +|+-+|.. +.||+++|+|+|.++-.++++. .++ . |.+..+. .
T Consensus 254 ~~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e---~~~-~-g~~~lv~------~ 319 (365)
T TIGR00236 254 SKRVHLIEPLEYLDFLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE---TVE-A-GTNKLVG------T 319 (365)
T ss_pred CCCEEEECCCChHHHHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH---HHh-c-CceEEeC------C
Confidence 4578888776654 56677775 88877644 7999999999999976555553 222 4 7666553 3
Q ss_pred CHHHHHHHHHHHhcCCchhHHHHHHH
Q 011106 421 KHEDVVAKIELVMNETDKGKEIRRKV 446 (493)
Q Consensus 421 ~~~~l~~ai~~~l~~~~~~~~~~~~a 446 (493)
++++|.+++.++++|+ ..+++.
T Consensus 320 d~~~i~~ai~~ll~~~----~~~~~~ 341 (365)
T TIGR00236 320 DKENITKAAKRLLTDP----DEYKKM 341 (365)
T ss_pred CHHHHHHHHHHHHhCh----HHHHHh
Confidence 7899999999999888 555444
No 57
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.94 E-value=1.2e-06 Score=88.25 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=76.8
Q ss_pred CCCeEEeeccChH---HhhccCCcCceeeccCc------hhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeec
Q 011106 344 KRGLLMKNWAPQL---EVLSHRATCAFLSHCGW------NSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVAR 414 (493)
Q Consensus 344 ~~nv~~~~~~pq~---~lL~~~~v~~~I~HgG~------gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~ 414 (493)
.++|.+.+|+|+. ++++.+++.++.+..+. +.+.|++++|+|+|+....+. .....+. +.|+.++.
T Consensus 283 l~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i~---~~G~~~~~ 357 (412)
T PRK10307 283 LPNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLVE---GIGVCVEP 357 (412)
T ss_pred CCceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHHh---CCcEEeCC
Confidence 4579988999874 46888887444444332 236899999999999865331 1122333 67777765
Q ss_pred CCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHhhc
Q 011106 415 GKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAISMK 482 (493)
Q Consensus 415 ~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 482 (493)
-+.++++++|.++++|++..+.+++++++..+. .-+....++++++.+++..
T Consensus 358 -----~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~-----------~fs~~~~~~~~~~~~~~~~ 409 (412)
T PRK10307 358 -----ESVEALVAAIAALARQALLRPKLGTVAREYAER-----------TLDKENVLRQFIADIRGLV 409 (412)
T ss_pred -----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-----------HcCHHHHHHHHHHHHHHHh
Confidence 578999999999998884444555555554332 2235566667666666544
No 58
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.93 E-value=1.7e-06 Score=86.59 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=67.0
Q ss_pred CCCeEEeeccChHH---hhccCCcCceee-ccCc-hhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCC
Q 011106 344 KRGLLMKNWAPQLE---VLSHRATCAFLS-HCGW-NSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTC 418 (493)
Q Consensus 344 ~~nv~~~~~~pq~~---lL~~~~v~~~I~-HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 418 (493)
.++|.+.+++|+.+ +|+.+++-++.+ +.|. .++.||+++|+|+|+.. .......+... ..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~~-~~G~lv~~---- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITDG-ENGLLVDF---- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhcccC-CceEEcCC----
Confidence 46899999999855 567788722222 2233 37899999999999864 34555666533 46776654
Q ss_pred ccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 011106 419 EVKHEDVVAKIELVMNETDKGKEIRRKVSEVRE 451 (493)
Q Consensus 419 ~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~ 451 (493)
-++++++++|.++++|++..+.+.+++++..+
T Consensus 351 -~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~ 382 (396)
T cd03818 351 -FDPDALAAAVIELLDDPARRARLRRAARRTAL 382 (396)
T ss_pred -CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 57999999999999988443445555554443
No 59
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.91 E-value=9.7e-07 Score=85.80 Aligned_cols=98 Identities=15% Similarity=0.218 Sum_probs=65.5
Q ss_pred CCCeEEeeccCh-HHhhccCCcCceeecc----CchhHHHHHHhCCcEecccccccchhhHHHHhhhhc-eeEEeecCCC
Q 011106 344 KRGLLMKNWAPQ-LEVLSHRATCAFLSHC----GWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMG-VCVEVARGKT 417 (493)
Q Consensus 344 ~~nv~~~~~~pq-~~lL~~~~v~~~I~Hg----G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG-~G~~~~~~~~ 417 (493)
..++.+..+... ..++..+++ +|.-. .-+++.||+++|+|+|+.+..+.+. .+... | .|..++.
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~-~~~g~~~~~--- 303 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIED-GVNGLLVPN--- 303 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhcc-CcceEEeCC---
Confidence 456777676443 668888886 55443 2468999999999999876544332 23334 4 7777764
Q ss_pred CccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 011106 418 CEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMI 453 (493)
Q Consensus 418 ~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~ 453 (493)
.+.+++.++|.++++|++..+.++++++++.+.+
T Consensus 304 --~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 337 (348)
T cd03820 304 --GDVEALAEALLRLMEDEELRKRMGANARESAERF 337 (348)
T ss_pred --CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999844444555554444443
No 60
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.90 E-value=7.9e-07 Score=87.39 Aligned_cols=146 Identities=14% Similarity=0.147 Sum_probs=89.9
Q ss_pred EEEEeccCCcCCCHHHHHHHHHHHHhCC-CcEEEEEcCCCCCCCCcchhcccCCchhHHHHh--ccCCCCeEEeeccChH
Q 011106 280 VLYISFGSMNTISASQMMQLAMALEASG-KNFIWVVRPPIGFDINSEFRASEWLPEGFEERI--RDSKRGLLMKNWAPQL 356 (493)
Q Consensus 280 ~V~vs~GS~~~~~~~~~~~i~~al~~~~-~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~nv~~~~~~pq~ 356 (493)
.+++..|+... ......+++++++.. .++++...+. ....+.... .....||.+.+|+|+.
T Consensus 192 ~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~g~--------------~~~~~~~~~~~~~~~~~V~~~g~v~~~ 255 (357)
T cd03795 192 PFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGEGP--------------LEAELEALAAALGLLDRVRFLGRLDDE 255 (357)
T ss_pred cEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeCCh--------------hHHHHHHHHHhcCCcceEEEcCCCCHH
Confidence 56667777642 233455777777765 4444443221 111111111 0115789999999974
Q ss_pred ---HhhccCCcCceee---ccCch-hHHHHHHhCCcEecccccccchhhHHHHhh-hhceeEEeecCCCCccCHHHHHHH
Q 011106 357 ---EVLSHRATCAFLS---HCGWN-SVLEALIHGVPIIGWPMAAEQFFNAKFLEQ-EMGVCVEVARGKTCEVKHEDVVAK 428 (493)
Q Consensus 357 ---~lL~~~~v~~~I~---HgG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~-~lG~G~~~~~~~~~~~~~~~l~~a 428 (493)
.+++.+++.++.+ +.|+| ++.||+++|+|+|+....+.... +.. . +.|...+. -+.+++.++
T Consensus 256 ~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~----i~~~~-~~g~~~~~-----~d~~~~~~~ 325 (357)
T cd03795 256 EKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSY----VNLHG-VTGLVVPP-----GDPAALAEA 325 (357)
T ss_pred HHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhH----HhhCC-CceEEeCC-----CCHHHHHHH
Confidence 4777788733323 24444 78999999999999765444433 332 4 67777754 589999999
Q ss_pred HHHHhcCCchhHHHHHHHHHHHH
Q 011106 429 IELVMNETDKGKEIRRKVSEVRE 451 (493)
Q Consensus 429 i~~~l~~~~~~~~~~~~a~~l~~ 451 (493)
|.++++|++..+.+++++++..+
T Consensus 326 i~~l~~~~~~~~~~~~~~~~~~~ 348 (357)
T cd03795 326 IRRLLEDPELRERLGEAARERAE 348 (357)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHH
Confidence 99999988544455555555443
No 61
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.88 E-value=7.9e-08 Score=95.03 Aligned_cols=133 Identities=17% Similarity=0.179 Sum_probs=83.3
Q ss_pred CcEEEEeccCCcCC-CHHHHHHHHHHHHhCCC-cEEEEEcCCCCCCCCcchhcccCCchhHHHHhcc---CCCCeEEeec
Q 011106 278 NSVLYISFGSMNTI-SASQMMQLAMALEASGK-NFIWVVRPPIGFDINSEFRASEWLPEGFEERIRD---SKRGLLMKNW 352 (493)
Q Consensus 278 ~~~V~vs~GS~~~~-~~~~~~~i~~al~~~~~-~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~nv~~~~~ 352 (493)
++.|++++|..... ....+..++++++.... ++.+....+. .....+.+...+ ..+++.+.+.
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~------------~~~~~l~~~~~~~~~~~~~v~~~~~ 265 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHP------------RTRPRIREAGLEFLGHHPNVLLISP 265 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCC------------ChHHHHHHHHHhhccCCCCEEEECC
Confidence 55788888876543 34567778888877533 2444443321 011222221110 0357777766
Q ss_pred cChH---HhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHH
Q 011106 353 APQL---EVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKI 429 (493)
Q Consensus 353 ~pq~---~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai 429 (493)
.++. .++..+++ ||+-+| |.+.||+++|+|+|+++.. |. +..+.+. |+++.+.. +.++|.++|
T Consensus 266 ~~~~~~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~~------~~~~i~~~i 331 (363)
T cd03786 266 LGYLYFLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVGT------DPEAILAAI 331 (363)
T ss_pred cCHHHHHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecCC------CHHHHHHHH
Confidence 5543 45667776 999998 7788999999999998743 22 3334435 66654432 589999999
Q ss_pred HHHhcCC
Q 011106 430 ELVMNET 436 (493)
Q Consensus 430 ~~~l~~~ 436 (493)
.++++++
T Consensus 332 ~~ll~~~ 338 (363)
T cd03786 332 EKLLSDE 338 (363)
T ss_pred HHHhcCc
Confidence 9999987
No 62
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.86 E-value=1.2e-06 Score=88.47 Aligned_cols=95 Identities=19% Similarity=0.221 Sum_probs=65.0
Q ss_pred CeEEeeccCh-HHhhccCCcCceee----ccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCcc
Q 011106 346 GLLMKNWAPQ-LEVLSHRATCAFLS----HCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEV 420 (493)
Q Consensus 346 nv~~~~~~pq-~~lL~~~~v~~~I~----HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~ 420 (493)
.+.+.+...+ ..+++.+++ +|+. -+|..++.||+++|+|+|+-|...++......+.+. |+++.. -
T Consensus 303 ~v~l~~~~~el~~~y~~aDi-~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~-------~ 373 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI-AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV-------E 373 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE-EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE-------C
Confidence 3444444444 567788886 3341 133345899999999999999888888888877645 666553 2
Q ss_pred CHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 011106 421 KHEDVVAKIELVMNETDKGKEIRRKVSEV 449 (493)
Q Consensus 421 ~~~~l~~ai~~~l~~~~~~~~~~~~a~~l 449 (493)
+.+++.++|.++++|++.-+.+.++++++
T Consensus 374 d~~~La~~l~~ll~~~~~~~~m~~~a~~~ 402 (425)
T PRK05749 374 DAEDLAKAVTYLLTDPDARQAYGEAGVAF 402 (425)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 68999999999999883333444444443
No 63
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.86 E-value=7.6e-06 Score=80.28 Aligned_cols=81 Identities=12% Similarity=0.122 Sum_probs=61.1
Q ss_pred CCCeEEeeccChH---HhhccCCcCcee----eccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCC
Q 011106 344 KRGLLMKNWAPQL---EVLSHRATCAFL----SHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGK 416 (493)
Q Consensus 344 ~~nv~~~~~~pq~---~lL~~~~v~~~I----~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 416 (493)
.+++.+.+++++. .++..+++ +| +-|.-+++.||+++|+|+|+-+.. .....+... +.|...+.
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~~-~~g~~~~~-- 328 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITDG-ENGLLVPP-- 328 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcCC-cceeEECC--
Confidence 5689999999874 46777776 44 224566889999999999986543 345556644 66777754
Q ss_pred CCccCHHHHHHHHHHHhcCC
Q 011106 417 TCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 417 ~~~~~~~~l~~ai~~~l~~~ 436 (493)
-+.+++.+++.++++++
T Consensus 329 ---~~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 329 ---GDPEALAEAILRLLADP 345 (377)
T ss_pred ---CCHHHHHHHHHHHhcCc
Confidence 68999999999999988
No 64
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.84 E-value=7.6e-06 Score=80.48 Aligned_cols=94 Identities=16% Similarity=0.238 Sum_probs=63.2
Q ss_pred CCCeEEee-ccCh---HHhhccCCcCceee----c--cCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEee
Q 011106 344 KRGLLMKN-WAPQ---LEVLSHRATCAFLS----H--CGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVA 413 (493)
Q Consensus 344 ~~nv~~~~-~~pq---~~lL~~~~v~~~I~----H--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~ 413 (493)
.+++.+.. |+|+ ..+++.+++ +|. . |..+++.||+++|+|+|+.+..+ ...+... +.|..++
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc
Confidence 46777765 4876 457777776 542 1 33458889999999999987544 2334434 6777776
Q ss_pred cCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 011106 414 RGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVR 450 (493)
Q Consensus 414 ~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~ 450 (493)
. -+.+++.+++.+++++++..+++.+++++..
T Consensus 318 ~-----~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 349 (366)
T cd03822 318 P-----GDPAALAEAIRRLLADPELAQALRARAREYA 349 (366)
T ss_pred C-----CCHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 5 4689999999999998733334444444443
No 65
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.79 E-value=1.4e-05 Score=76.51 Aligned_cols=300 Identities=16% Similarity=0.149 Sum_probs=158.3
Q ss_pred EEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc--chhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCC
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL--NIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVL 84 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~--~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~ 84 (493)
||.+-- ...-|+.-+-.+.+.|.+ +||+|.+.+-.. ..+.+.. .++.+..+... + . .
T Consensus 2 kIwiDi-~~p~hvhfFk~~I~eL~~--~GheV~it~R~~~~~~~LL~~-----yg~~y~~iG~~----g--~------~- 60 (335)
T PF04007_consen 2 KIWIDI-THPAHVHFFKNIIRELEK--RGHEVLITARDKDETEELLDL-----YGIDYIVIGKH----G--D------S- 60 (335)
T ss_pred eEEEEC-CCchHHHHHHHHHHHHHh--CCCEEEEEEeccchHHHHHHH-----cCCCeEEEcCC----C--C------C-
Confidence 344433 344499999999999999 999999887443 2344444 66777777631 1 0 0
Q ss_pred ChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhcccCCCC
Q 011106 85 PYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTNLPHN 164 (493)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~p~~ 164 (493)
. ..++.... .....+.+++.+.+ ||++|+- .+..+..+|..+|+|+|.+.=.........+ ..|.
T Consensus 61 ~---~~Kl~~~~-~R~~~l~~~~~~~~-----pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~~L----t~Pl- 125 (335)
T PF04007_consen 61 L---YGKLLESI-ERQYKLLKLIKKFK-----PDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQNRL----TLPL- 125 (335)
T ss_pred H---HHHHHHHH-HHHHHHHHHHHhhC-----CCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhcccee----ehhc-
Confidence 1 12223322 22345666777777 9999975 4567888999999999998543211100000 0000
Q ss_pred CCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhcCCceeec
Q 011106 165 KVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKLGLSVWPV 244 (493)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~v 244 (493)
.+.+..|. .++... +.+... +....-.+.+.|+. |+
T Consensus 126 ---a~~i~~P~----------~~~~~~------------~~~~G~---~~~i~~y~G~~E~a----------------yl 161 (335)
T PF04007_consen 126 ---ADVIITPE----------AIPKEF------------LKRFGA---KNQIRTYNGYKELA----------------YL 161 (335)
T ss_pred ---CCeeECCc----------ccCHHH------------HHhcCC---cCCEEEECCeeeEE----------------ee
Confidence 00000000 000000 000000 00000122222221 22
Q ss_pred cccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcC----CCHHHHHHHHHHHHhCCCcEEEEEcCCCCC
Q 011106 245 GPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNT----ISASQMMQLAMALEASGKNFIWVVRPPIGF 320 (493)
Q Consensus 245 Gpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~----~~~~~~~~i~~al~~~~~~vi~~~~~~~~~ 320 (493)
-|. +++++..+-++.. +++.|++-+.+... .....+..+++.+++.+..++...+...
T Consensus 162 ~~F---------------~Pd~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~-- 223 (335)
T PF04007_consen 162 HPF---------------KPDPEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYED-- 223 (335)
T ss_pred cCC---------------CCChhHHHHcCCC-CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcc--
Confidence 221 1233444445422 45688888776432 3345677789999988877555543321
Q ss_pred CCCcchhcccCCchhHHHHhccCCCCeEEe-eccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchhhH
Q 011106 321 DINSEFRASEWLPEGFEERIRDSKRGLLMK-NWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNA 399 (493)
Q Consensus 321 ~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~-~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na 399 (493)
.++.+. .-++.+. .-++-.+||.++++ +|+-|| ....||...|+|.|.+ +.++-...-
T Consensus 224 -----------~~~~~~------~~~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd 282 (335)
T PF04007_consen 224 -----------QRELFE------KYGVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVD 282 (335)
T ss_pred -----------hhhHHh------ccCccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHH
Confidence 111111 1123222 33455689999996 888666 7889999999999975 222221222
Q ss_pred HHHhhhhceeEEeecCCCCccCHHHHHHHHHHHh
Q 011106 400 KFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVM 433 (493)
Q Consensus 400 ~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l 433 (493)
+.+.+. |. .. ...+.+++.+.+.+.+
T Consensus 283 ~~L~~~-Gl--l~-----~~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 283 KYLIEK-GL--LY-----HSTDPDEIVEYVRKNL 308 (335)
T ss_pred HHHHHC-CC--eE-----ecCCHHHHHHHHHHhh
Confidence 334545 65 22 2457788777665544
No 66
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.74 E-value=1.2e-05 Score=78.98 Aligned_cols=98 Identities=10% Similarity=0.057 Sum_probs=63.7
Q ss_pred CCCeEEeeccCh-HHhhccCCcCceee--ccCc-hhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCc
Q 011106 344 KRGLLMKNWAPQ-LEVLSHRATCAFLS--HCGW-NSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCE 419 (493)
Q Consensus 344 ~~nv~~~~~~pq-~~lL~~~~v~~~I~--HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~ 419 (493)
.++|.+.+|.++ ..+|+.+++.++-+ +-|+ +++.||+++|+|+|+... ......+... +.|..++.
T Consensus 245 ~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~----- 314 (355)
T cd03819 245 QDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRPG-ETGLLVPP----- 314 (355)
T ss_pred cceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhCC-CceEEeCC-----
Confidence 467888888554 66888888733322 2333 589999999999998643 3345555533 47877765
Q ss_pred cCHHHHHHHHHHHhc-CCchhHHHHHHHHHHHH
Q 011106 420 VKHEDVVAKIELVMN-ETDKGKEIRRKVSEVRE 451 (493)
Q Consensus 420 ~~~~~l~~ai~~~l~-~~~~~~~~~~~a~~l~~ 451 (493)
-+.+++.++|..++. +++..+.++++|++..+
T Consensus 315 ~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 315 GDAEALAQALDQILSLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred CCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 589999999975554 55333345555544443
No 67
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.73 E-value=8.9e-06 Score=81.26 Aligned_cols=93 Identities=13% Similarity=0.063 Sum_probs=64.0
Q ss_pred CCCeEEeeccChH---HhhccCCcCceeec---cC-chhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCC
Q 011106 344 KRGLLMKNWAPQL---EVLSHRATCAFLSH---CG-WNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGK 416 (493)
Q Consensus 344 ~~nv~~~~~~pq~---~lL~~~~v~~~I~H---gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 416 (493)
.++|.+.+++|+. .++..+++ ++.. -| -.++.||+++|+|+|+.-.. .....+... +.|...+.
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~~-~~g~~~~~-- 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVDG-ETGFLCEP-- 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhccC-CceEEeCC--
Confidence 4689999999985 46787886 5432 22 24788999999999987432 334445533 56766532
Q ss_pred CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 011106 417 TCEVKHEDVVAKIELVMNETDKGKEIRRKVSEV 449 (493)
Q Consensus 417 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l 449 (493)
+.++++++|.+++++++..+.+.+++++.
T Consensus 350 ----~~~~~a~~i~~l~~~~~~~~~~~~~a~~~ 378 (392)
T cd03805 350 ----TPEEFAEAMLKLANDPDLADRMGAAGRKR 378 (392)
T ss_pred ----CHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 78999999999999884444455555443
No 68
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.73 E-value=5.9e-06 Score=83.02 Aligned_cols=95 Identities=9% Similarity=0.046 Sum_probs=66.6
Q ss_pred CCCeEEeeccChH---HhhccCCcCceee---ccCc-hhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCC
Q 011106 344 KRGLLMKNWAPQL---EVLSHRATCAFLS---HCGW-NSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGK 416 (493)
Q Consensus 344 ~~nv~~~~~~pq~---~lL~~~~v~~~I~---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 416 (493)
.++|.+.+++++. ++|+.+++ +|. +.|+ .++.||+++|+|+|+.... .....+... +.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADG-ETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccC-CceEECCC--
Confidence 3579999999864 57888886 542 2344 4899999999999986543 344455534 56776654
Q ss_pred CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 011106 417 TCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVR 450 (493)
Q Consensus 417 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~ 450 (493)
-+.++++++|.+++++++..+.+++++++..
T Consensus 353 ---~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~ 383 (405)
T TIGR03449 353 ---HDPADWADALARLLDDPRTRIRMGAAAVEHA 383 (405)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 4889999999999998744445555555443
No 69
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.71 E-value=1.8e-05 Score=77.84 Aligned_cols=92 Identities=14% Similarity=0.115 Sum_probs=63.8
Q ss_pred CCCeEEeeccChHH---hhccCCcCceeec---cC-chhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCC
Q 011106 344 KRGLLMKNWAPQLE---VLSHRATCAFLSH---CG-WNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGK 416 (493)
Q Consensus 344 ~~nv~~~~~~pq~~---lL~~~~v~~~I~H---gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 416 (493)
.+++.+.+|+++.+ ++..+++ +|.- .| -.++.||+++|+|+|+.+. ......+. . +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~~-~-~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELIE-Y-GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHhh-c-CceEEeCC--
Confidence 57889999999644 5787887 4432 22 4578999999999999653 33444444 4 67776654
Q ss_pred CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 011106 417 TCEVKHEDVVAKIELVMNETDKGKEIRRKVSEV 449 (493)
Q Consensus 417 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l 449 (493)
+.+++.++|.+++++++..+.+.+++++.
T Consensus 331 ----~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 331 ----DVDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred ----ChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 45999999999999873433455555544
No 70
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.69 E-value=5.4e-06 Score=80.64 Aligned_cols=81 Identities=14% Similarity=0.101 Sum_probs=56.5
Q ss_pred CCCeEEeeccCh-HHhhccCCcCceeec----cCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCC
Q 011106 344 KRGLLMKNWAPQ-LEVLSHRATCAFLSH----CGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTC 418 (493)
Q Consensus 344 ~~nv~~~~~~pq-~~lL~~~~v~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 418 (493)
.+++.+.++.++ .++++.+++ +|.- |.-+++.||+++|+|+|+.... .....+... +.|...+.
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~---- 313 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPV---- 313 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECC----
Confidence 467888888776 568888886 5532 3345789999999999986433 556667655 77887765
Q ss_pred ccCHHHH---HHHHHHHhcCC
Q 011106 419 EVKHEDV---VAKIELVMNET 436 (493)
Q Consensus 419 ~~~~~~l---~~ai~~~l~~~ 436 (493)
-+.+.+ .+++..++.++
T Consensus 314 -~~~~~~~~~~~~i~~~~~~~ 333 (353)
T cd03811 314 -GDEAALAAAALALLDLLLDP 333 (353)
T ss_pred -CCHHHHHHHHHHHHhccCCh
Confidence 467777 55555666655
No 71
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.69 E-value=1.2e-05 Score=80.63 Aligned_cols=79 Identities=18% Similarity=0.263 Sum_probs=55.1
Q ss_pred CCCeEEeeccChH---HhhccCCcCceee---ccCch-hHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCC
Q 011106 344 KRGLLMKNWAPQL---EVLSHRATCAFLS---HCGWN-SVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGK 416 (493)
Q Consensus 344 ~~nv~~~~~~pq~---~lL~~~~v~~~I~---HgG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 416 (493)
.++|.+.+|+|+. .+++.+++ +|. +-|+| ++.||+++|+|+|+-+..+ ....+. . |.+. +..
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~-~-~~~~-~~~-- 317 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLP-P-DMIL-LAE-- 317 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhee-C-Ccee-ecC--
Confidence 3568888999864 47777886 543 33444 9999999999999976542 334444 4 4342 322
Q ss_pred CCccCHHHHHHHHHHHhcCC
Q 011106 417 TCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 417 ~~~~~~~~l~~ai~~~l~~~ 436 (493)
.+.+++.+++.+++++.
T Consensus 318 ---~~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 318 ---PDVESIVRKLEEAISIL 334 (398)
T ss_pred ---CCHHHHHHHHHHHHhCh
Confidence 27899999999999865
No 72
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.68 E-value=3e-05 Score=74.62 Aligned_cols=338 Identities=16% Similarity=0.153 Sum_probs=181.0
Q ss_pred EEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEe-CccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCChh
Q 011106 9 VMFPFMAQGHIIPFLALALHIEQRHKNYSITFVS-TPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLPYN 87 (493)
Q Consensus 9 l~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~-~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~ 87 (493)
+.+=.-+.|-++-.+.|.++|.++..++.|++-| ++...+.+.+... +.+....+|.+ +
T Consensus 52 vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~--~~v~h~YlP~D-----~------------- 111 (419)
T COG1519 52 VWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFG--DSVIHQYLPLD-----L------------- 111 (419)
T ss_pred EEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcC--CCeEEEecCcC-----c-------------
Confidence 3333468899999999999999933388888877 5666666666443 34555555532 0
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEE-ECCcchhh-HHHHHHcCCceEEEechhHHHHHHHhhhcccCCCCC
Q 011106 88 LVIHLLRASTSLKPAFKEVISSLINQGRPPLCII-ADIFFGWT-CGVAKELNVFHAIFSGSGSYGLACYYSFWTNLPHNK 165 (493)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI-~D~~~~~~-~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~p~~~ 165 (493)
...+..+++.++ ||++| ++.=.|+. ..-++..|+|.+.+..=-
T Consensus 112 ------------~~~v~rFl~~~~-----P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRL------------------ 156 (419)
T COG1519 112 ------------PIAVRRFLRKWR-----PKLLIIMETELWPNLINELKRRGIPLVLVNARL------------------ 156 (419)
T ss_pred ------------hHHHHHHHHhcC-----CCEEEEEeccccHHHHHHHHHcCCCEEEEeeee------------------
Confidence 135667788888 99876 44444433 356788999999873210
Q ss_pred CCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhcC-Cceeec
Q 011106 166 VTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKLG-LSVWPV 244 (493)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~-~~~~~v 244 (493)
.-+.+..+... . .+.+ ..+.+.+.++..+-..-+ .+.. ++ +++..+
T Consensus 157 -----------------S~rS~~~y~k~----~---~~~~---~~~~~i~li~aQse~D~~-----Rf~~-LGa~~v~v~ 203 (419)
T COG1519 157 -----------------SDRSFARYAKL----K---FLAR---LLFKNIDLILAQSEEDAQ-----RFRS-LGAKPVVVT 203 (419)
T ss_pred -----------------chhhhHHHHHH----H---HHHH---HHHHhcceeeecCHHHHH-----HHHh-cCCcceEEe
Confidence 00000000000 0 0000 011122333332221111 1111 22 335666
Q ss_pred cccccccccccccCCCCCCCh---hhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCC--CcEEEEEcCCCC
Q 011106 245 GPILLSLENRANAGKEGGTSI---KFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASG--KNFIWVVRPPIG 319 (493)
Q Consensus 245 Gpl~~~~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~--~~vi~~~~~~~~ 319 (493)
|-+=-+.. +..... ..+...++.. ..+.|..+|+. ...+..-.+..++.+.. ...||+=+-..+
T Consensus 204 GNlKfd~~-------~~~~~~~~~~~~r~~l~~~---r~v~iaaSTH~-GEeei~l~~~~~l~~~~~~~llIlVPRHpER 272 (419)
T COG1519 204 GNLKFDIE-------PPPQLAAELAALRRQLGGH---RPVWVAASTHE-GEEEIILDAHQALKKQFPNLLLILVPRHPER 272 (419)
T ss_pred cceeecCC-------CChhhHHHHHHHHHhcCCC---CceEEEecCCC-chHHHHHHHHHHHHhhCCCceEEEecCChhh
Confidence 65532210 011111 1233334332 24555555633 34555555666666643 344444322111
Q ss_pred CCCCcchhcccCCchhHHH--HhccCCCCeEEeeccCh-HHhhccCCc----CceeeccCchhHHHHHHhCCcEeccccc
Q 011106 320 FDINSEFRASEWLPEGFEE--RIRDSKRGLLMKNWAPQ-LEVLSHRAT----CAFLSHCGWNSVLEALIHGVPIIGWPMA 392 (493)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~~--~~~~~~~nv~~~~~~pq-~~lL~~~~v----~~~I~HgG~gs~~eal~~GvP~l~~P~~ 392 (493)
|+.-.+...+.-+.-.... ....+..+|.+.|-+-- ..+++-+++ +.++.+||+| ..|.+++|+|+|.=|+.
T Consensus 273 f~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~ 351 (419)
T COG1519 273 FKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYT 351 (419)
T ss_pred HHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCcc
Confidence 1000000000000000000 00001346666665543 445555555 2346799998 67999999999999999
Q ss_pred ccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Q 011106 393 AEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIK 454 (493)
Q Consensus 393 ~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~ 454 (493)
.-|.+-++++.+. |.|+.++ +.+.|.++++.+++|++..+.|.+++.++-+..+
T Consensus 352 ~Nf~ei~~~l~~~-ga~~~v~-------~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~ 405 (419)
T COG1519 352 FNFSDIAERLLQA-GAGLQVE-------DADLLAKAVELLLADEDKREAYGRAGLEFLAQNR 405 (419)
T ss_pred ccHHHHHHHHHhc-CCeEEEC-------CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999988 9999886 3889999999999887454455555555555554
No 73
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.68 E-value=1.4e-05 Score=78.73 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=58.4
Q ss_pred CCCeEEeeccC-hH---HhhccCCcCceeec----cCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecC
Q 011106 344 KRGLLMKNWAP-QL---EVLSHRATCAFLSH----CGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARG 415 (493)
Q Consensus 344 ~~nv~~~~~~p-q~---~lL~~~~v~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~ 415 (493)
..++....|++ +. .+++.+++ +|.- |..+++.||+++|+|+|+... ......+... +.|..++.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~~~-~~g~~~~~- 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVDHG-VTGYLAKP- 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhheeCC-CceEEeCC-
Confidence 45788889998 43 46888886 6664 334789999999999997653 2333344433 46766654
Q ss_pred CCCccCHHHHHHHHHHHhcCC
Q 011106 416 KTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 416 ~~~~~~~~~l~~ai~~~l~~~ 436 (493)
.+.+++.+++.++++++
T Consensus 315 ----~~~~~~~~~l~~l~~~~ 331 (365)
T cd03825 315 ----GDPEDLAEGIEWLLADP 331 (365)
T ss_pred ----CCHHHHHHHHHHHHhCH
Confidence 57899999999999888
No 74
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.67 E-value=1.3e-05 Score=78.77 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=64.4
Q ss_pred CCCeEEeeccChH---HhhccCCcCceee----------ccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeE
Q 011106 344 KRGLLMKNWAPQL---EVLSHRATCAFLS----------HCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCV 410 (493)
Q Consensus 344 ~~nv~~~~~~pq~---~lL~~~~v~~~I~----------HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~ 410 (493)
+++|.+.+++|+. .+++.+++ +|. -|.-+++.||+++|+|+|+.+.. .....++.. ..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~~~-~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVEDG-ETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----CcchhhhCC-CceE
Confidence 5789999999864 46677887 444 23346899999999999987542 233344422 4787
Q ss_pred EeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 011106 411 EVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSE 448 (493)
Q Consensus 411 ~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~ 448 (493)
.+.. -+.+++.++|.+++++++..+.+.++|++
T Consensus 308 ~~~~-----~~~~~l~~~i~~~~~~~~~~~~~~~~a~~ 340 (355)
T cd03799 308 LVPP-----GDPEALADAIERLLDDPELRREMGEAGRA 340 (355)
T ss_pred EeCC-----CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 7764 48999999999999988333344444443
No 75
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.64 E-value=1.9e-05 Score=78.01 Aligned_cols=96 Identities=16% Similarity=0.189 Sum_probs=62.0
Q ss_pred CCCeEEeeccCh--H---HhhccCCcCceeec----cCchhHHHHHHhCCcEeccc-ccccchhhHHHHhhhhceeEEee
Q 011106 344 KRGLLMKNWAPQ--L---EVLSHRATCAFLSH----CGWNSVLEALIHGVPIIGWP-MAAEQFFNAKFLEQEMGVCVEVA 413 (493)
Q Consensus 344 ~~nv~~~~~~pq--~---~lL~~~~v~~~I~H----gG~gs~~eal~~GvP~l~~P-~~~DQ~~na~~v~~~lG~G~~~~ 413 (493)
+++|.+.+|.++ . +.+..+++ +|.. |--.++.||+++|+|+|+.- .. .....++.. ..|..++
T Consensus 235 ~~~v~f~G~~~~~~~~~~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~----g~~eiv~~~-~~G~lv~ 307 (359)
T PRK09922 235 EQRIIWHGWQSQPWEVVQQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMS----GPRDIIKPG-LNGELYT 307 (359)
T ss_pred CCeEEEecccCCcHHHHHHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCC----ChHHHccCC-CceEEEC
Confidence 468888888754 2 23444565 5543 22468999999999999875 32 222345433 4577775
Q ss_pred cCCCCccCHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHH
Q 011106 414 RGKTCEVKHEDVVAKIELVMNETD--KGKEIRRKVSEVRE 451 (493)
Q Consensus 414 ~~~~~~~~~~~l~~ai~~~l~~~~--~~~~~~~~a~~l~~ 451 (493)
. -+.++++++|.+++++++ ..+.++++++++..
T Consensus 308 ~-----~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 342 (359)
T PRK09922 308 P-----GNIDEFVGKLNKVISGEVKYQHDAIPNSIERFYE 342 (359)
T ss_pred C-----CCHHHHHHHHHHHHhCcccCCHHHHHHHHHHhhH
Confidence 4 599999999999999994 12334444444443
No 76
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.64 E-value=4.7e-06 Score=81.99 Aligned_cols=131 Identities=21% Similarity=0.267 Sum_probs=77.9
Q ss_pred CcEEEEeccCCc--C-CCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccC
Q 011106 278 NSVLYISFGSMN--T-ISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAP 354 (493)
Q Consensus 278 ~~~V~vs~GS~~--~-~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~p 354 (493)
++.|+|++=... . ...+.+..+++++...+.++++...... +. + ..+.+....... ..+++.+.+-++
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~---p~-~----~~i~~~i~~~~~-~~~~v~l~~~l~ 271 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD---AG-S----RIINEAIEEYVN-EHPNFRLFKSLG 271 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC---CC-c----hHHHHHHHHHhc-CCCCEEEECCCC
Confidence 458888875432 2 3457788999999888766666543220 00 0 001111111110 035788876554
Q ss_pred h---HHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEE-eecCCCCccCHHHHHHHHH
Q 011106 355 Q---LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVE-VARGKTCEVKHEDVVAKIE 430 (493)
Q Consensus 355 q---~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~-~~~~~~~~~~~~~l~~ai~ 430 (493)
. ..+++++++ +|+-++.|- .||.+.|+|.|.+- +.+ .-++ . |..+. + ..++++|.+++.
T Consensus 272 ~~~~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~~-~-g~nvl~v------g~~~~~I~~a~~ 334 (365)
T TIGR03568 272 QERYLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGRL-R-ADSVIDV------DPDKEEIVKAIE 334 (365)
T ss_pred hHHHHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hhhh-h-cCeEEEe------CCCHHHHHHHHH
Confidence 4 668888886 998775555 89999999999773 211 1111 2 33222 3 257899999999
Q ss_pred HHhc
Q 011106 431 LVMN 434 (493)
Q Consensus 431 ~~l~ 434 (493)
++++
T Consensus 335 ~~~~ 338 (365)
T TIGR03568 335 KLLD 338 (365)
T ss_pred HHhC
Confidence 9553
No 77
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.59 E-value=2.1e-05 Score=77.72 Aligned_cols=93 Identities=15% Similarity=0.122 Sum_probs=66.2
Q ss_pred CCCeEEeeccChHH---hhccCCcCceeec----------cCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeE
Q 011106 344 KRGLLMKNWAPQLE---VLSHRATCAFLSH----------CGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCV 410 (493)
Q Consensus 344 ~~nv~~~~~~pq~~---lL~~~~v~~~I~H----------gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~ 410 (493)
..++.+.+++|+.+ +++.+++ +|.- |--+++.||+++|+|+|+-+.. .++..+... +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeE
Confidence 46788889998754 5788886 5432 2346899999999999987653 366666655 7888
Q ss_pred EeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 011106 411 EVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSE 448 (493)
Q Consensus 411 ~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~ 448 (493)
.++. -+.+++.++|.++++|++..+.+.+++++
T Consensus 317 ~~~~-----~d~~~l~~~i~~l~~~~~~~~~~~~~a~~ 349 (367)
T cd05844 317 LVPE-----GDVAALAAALGRLLADPDLRARMGAAGRR 349 (367)
T ss_pred EECC-----CCHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 7764 57899999999999988333334444433
No 78
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.58 E-value=5.6e-05 Score=73.96 Aligned_cols=79 Identities=18% Similarity=0.199 Sum_probs=56.1
Q ss_pred CCCeEEeeccCh-HHhhccCCcCceeeccC----chhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCC
Q 011106 344 KRGLLMKNWAPQ-LEVLSHRATCAFLSHCG----WNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTC 418 (493)
Q Consensus 344 ~~nv~~~~~~pq-~~lL~~~~v~~~I~HgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 418 (493)
..++.+.....+ ..+++.+++ +|..+. -+++.||+++|+|+|+.. ...+...+.. .|..++.
T Consensus 250 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~~~---~g~~~~~---- 316 (365)
T cd03807 250 EDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELVGD---TGFLVPP---- 316 (365)
T ss_pred CceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHhhc---CCEEeCC----
Confidence 346666655444 568888886 665443 368999999999999854 3445555553 4555554
Q ss_pred ccCHHHHHHHHHHHhcCC
Q 011106 419 EVKHEDVVAKIELVMNET 436 (493)
Q Consensus 419 ~~~~~~l~~ai~~~l~~~ 436 (493)
-+.+++.+++.++++++
T Consensus 317 -~~~~~l~~~i~~l~~~~ 333 (365)
T cd03807 317 -GDPEALAEAIEALLADP 333 (365)
T ss_pred -CCHHHHHHHHHHHHhCh
Confidence 46899999999999987
No 79
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.54 E-value=0.00015 Score=78.49 Aligned_cols=98 Identities=11% Similarity=0.123 Sum_probs=64.9
Q ss_pred CCCeEEeeccChHH---hhccCC--cCceeec---cCch-hHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeec
Q 011106 344 KRGLLMKNWAPQLE---VLSHRA--TCAFLSH---CGWN-SVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVAR 414 (493)
Q Consensus 344 ~~nv~~~~~~pq~~---lL~~~~--v~~~I~H---gG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~ 414 (493)
.++|.+.+++++.+ ++..++ .++||.- =|+| ++.||+++|+|+|+-...+ ....++.. .-|+.+++
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g-~nGlLVdP 621 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVL-DNGLLVDP 621 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccC-CcEEEECC
Confidence 35677778888754 455442 1236653 3444 8889999999999986432 33334422 45777765
Q ss_pred CCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 011106 415 GKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVRE 451 (493)
Q Consensus 415 ~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~ 451 (493)
-++++|+++|.++++|++..+.|.+++++..+
T Consensus 622 -----~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~ 653 (1050)
T TIGR02468 622 -----HDQQAIADALLKLVADKQLWAECRQNGLKNIH 653 (1050)
T ss_pred -----CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 58999999999999998444556666555443
No 80
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.47 E-value=4.7e-06 Score=80.47 Aligned_cols=101 Identities=20% Similarity=0.206 Sum_probs=70.1
Q ss_pred HHhhccCCcCceeeccCchhHHHHHHhCCcEeccccc--ccchhhHHHHh---hhhceeEEeec----------CCCCcc
Q 011106 356 LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMA--AEQFFNAKFLE---QEMGVCVEVAR----------GKTCEV 420 (493)
Q Consensus 356 ~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~--~DQ~~na~~v~---~~lG~G~~~~~----------~~~~~~ 420 (493)
.+++..+++ +|+-+|..|+ |+..+|+|||+ ++- .=|+.||+++. .. |+..-+.. --....
T Consensus 230 ~~~m~~aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~i-gL~Nii~~~~~~~~vvPEllQ~~~ 304 (347)
T PRK14089 230 HKALLEAEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHI-GLANIFFDFLGKEPLHPELLQEFV 304 (347)
T ss_pred HHHHHhhhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCee-ehHHHhcCCCcccccCchhhcccC
Confidence 568888886 9999999999 99999999998 553 45888999988 33 55444410 013668
Q ss_pred CHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHH
Q 011106 421 KHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFL 475 (493)
Q Consensus 421 ~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~ 475 (493)
|++.|.+++.+ +..+ .+++...++++.+ .. +++.++++.+.
T Consensus 305 t~~~la~~i~~-~~~~----~~~~~~~~l~~~l--------~~-~a~~~~A~~i~ 345 (347)
T PRK14089 305 TVENLLKAYKE-MDRE----KFFKKSKELREYL--------KH-GSAKNVAKILK 345 (347)
T ss_pred CHHHHHHHHHH-HHHH----HHHHHHHHHHHHh--------cC-CHHHHHHHHHh
Confidence 99999999977 2222 4666666666655 33 44666665554
No 81
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.46 E-value=9.1e-05 Score=72.06 Aligned_cols=129 Identities=12% Similarity=0.104 Sum_probs=75.9
Q ss_pred EEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHh-ccCCCCeEEeeccChHH--
Q 011106 281 LYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERI-RDSKRGLLMKNWAPQLE-- 357 (493)
Q Consensus 281 V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~nv~~~~~~pq~~-- 357 (493)
+.+..|.... ......++++++..+.++++.-.... . ..+........ . .+++.+..++++.+
T Consensus 173 ~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i~G~~~~-------~---~~~~~~~~~~~~~--~~~v~~~G~~~~~~~~ 238 (335)
T cd03802 173 YLLFLGRISP--EKGPHLAIRAARRAGIPLKLAGPVSD-------P---DYFYREIAPELLD--GPDIEYLGEVGGAEKA 238 (335)
T ss_pred EEEEEEeecc--ccCHHHHHHHHHhcCCeEEEEeCCCC-------H---HHHHHHHHHhccc--CCcEEEeCCCCHHHHH
Confidence 3444566632 23344567777778877665543321 0 00001111110 1 47899999999854
Q ss_pred -hhccCCcCceee--ccCc-hhHHHHHHhCCcEecccccccchhhHHHHhhhhc-eeEEeecCCCCccCHHHHHHHHHHH
Q 011106 358 -VLSHRATCAFLS--HCGW-NSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMG-VCVEVARGKTCEVKHEDVVAKIELV 432 (493)
Q Consensus 358 -lL~~~~v~~~I~--HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG-~G~~~~~~~~~~~~~~~l~~ai~~~ 432 (493)
+++.+++.++-+ +-|+ .++.||+++|+|+|+... ......+. . | .|...+ . .+++.+++.++
T Consensus 239 ~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i~-~-~~~g~l~~----~---~~~l~~~l~~l 305 (335)
T cd03802 239 ELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVVE-D-GVTGFLVD----S---VEELAAAVARA 305 (335)
T ss_pred HHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhhee-C-CCcEEEeC----C---HHHHHHHHHHH
Confidence 678788733322 2344 479999999999998754 33444444 4 4 565543 2 89999999988
Q ss_pred hcCC
Q 011106 433 MNET 436 (493)
Q Consensus 433 l~~~ 436 (493)
+...
T Consensus 306 ~~~~ 309 (335)
T cd03802 306 DRLD 309 (335)
T ss_pred hccH
Confidence 7544
No 82
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.46 E-value=9.6e-05 Score=72.62 Aligned_cols=79 Identities=11% Similarity=0.067 Sum_probs=55.9
Q ss_pred CCCeEEeeccCh-HHhhccCCcCceeecc----CchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCC
Q 011106 344 KRGLLMKNWAPQ-LEVLSHRATCAFLSHC----GWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTC 418 (493)
Q Consensus 344 ~~nv~~~~~~pq-~~lL~~~~v~~~I~Hg----G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 418 (493)
.+++.+.++..+ .++++.+++ +|.-. .-+++.||+++|+|+|+. |...+...+.. .|..+..
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~---~g~~~~~---- 310 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD---SGLIVPI---- 310 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC---CceEeCC----
Confidence 457888887765 678888887 44432 246889999999999974 45556666663 3444443
Q ss_pred ccCHHHHHHHHHHHhcCC
Q 011106 419 EVKHEDVVAKIELVMNET 436 (493)
Q Consensus 419 ~~~~~~l~~ai~~~l~~~ 436 (493)
-+.+++.+++.++++++
T Consensus 311 -~~~~~~~~~i~~ll~~~ 327 (360)
T cd04951 311 -SDPEALANKIDEILKMS 327 (360)
T ss_pred -CCHHHHHHHHHHHHhCC
Confidence 58899999999999543
No 83
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.44 E-value=0.0001 Score=73.07 Aligned_cols=92 Identities=12% Similarity=0.113 Sum_probs=61.3
Q ss_pred CCeEEeeccCh-HHhhccCCcCcee--ec--cCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCc
Q 011106 345 RGLLMKNWAPQ-LEVLSHRATCAFL--SH--CGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCE 419 (493)
Q Consensus 345 ~nv~~~~~~pq-~~lL~~~~v~~~I--~H--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~ 419 (493)
.++.+..+..+ .++++.+++ +| ++ |--.++.||+++|+|+|+-... .+...++.. ..|..++.
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~~-~~g~~~~~----- 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQHG-VTGALVPP----- 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcCC-CceEEeCC-----
Confidence 44555555444 678888887 55 22 3355899999999999996643 355555533 46777654
Q ss_pred cCHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 011106 420 VKHEDVVAKIELVMNETDKGKEIRRKVSE 448 (493)
Q Consensus 420 ~~~~~l~~ai~~~l~~~~~~~~~~~~a~~ 448 (493)
-+.++++++|.+++++++..+.+.+++++
T Consensus 323 ~d~~~la~~i~~l~~~~~~~~~~~~~a~~ 351 (374)
T TIGR03088 323 GDAVALARALQPYVSDPAARRAHGAAGRA 351 (374)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 57899999999999887322233344433
No 84
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.43 E-value=1.2e-06 Score=70.76 Aligned_cols=121 Identities=18% Similarity=0.209 Sum_probs=78.7
Q ss_pred EEEEeccCCcCCC--HHH-HHHHHHHHHhCCC-cEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccCh
Q 011106 280 VLYISFGSMNTIS--ASQ-MMQLAMALEASGK-NFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQ 355 (493)
Q Consensus 280 ~V~vs~GS~~~~~--~~~-~~~i~~al~~~~~-~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq 355 (493)
.+||+-||..... ... -......|.+.|. +.|+..|.+. ...++......+.++=.+...+|-|-
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~-----------~~~~d~~~~~~k~~gl~id~y~f~ps 73 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQ-----------PFFGDPIDLIRKNGGLTIDGYDFSPS 73 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCc-----------cCCCCHHHhhcccCCeEEEEEecCcc
Confidence 7999999876311 111 1225566667765 6677777652 01111111100101333555678886
Q ss_pred -HHhhccCCcCceeeccCchhHHHHHHhCCcEecccc----cccchhhHHHHhhhhceeEEeec
Q 011106 356 -LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPM----AAEQFFNAKFLEQEMGVCVEVAR 414 (493)
Q Consensus 356 -~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~lG~G~~~~~ 414 (493)
.+..+.+++ +|.|+|.||++|.|..|+|.|+++- .-.|-.-|..++++ |-=..-.+
T Consensus 74 l~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~~C~p 134 (170)
T KOG3349|consen 74 LTEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLYYCTP 134 (170)
T ss_pred HHHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEEEeec
Confidence 667777886 9999999999999999999999993 44688999999966 76555444
No 85
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.42 E-value=0.00031 Score=69.11 Aligned_cols=77 Identities=19% Similarity=0.204 Sum_probs=50.7
Q ss_pred CCCeEEeeccChHH---hhccCCcCceeeccCc-----hhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecC
Q 011106 344 KRGLLMKNWAPQLE---VLSHRATCAFLSHCGW-----NSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARG 415 (493)
Q Consensus 344 ~~nv~~~~~~pq~~---lL~~~~v~~~I~HgG~-----gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~ 415 (493)
.++|.+.+++++.+ ++..+++ ++-++-. +++.||+++|+|+|+....+ +...++ ..|.....
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~---~~g~~~~~- 316 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLG---DKAIYFKV- 316 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeec---CCeeEecC-
Confidence 57899999999864 5555665 5444332 47899999999999875432 222233 12333332
Q ss_pred CCCccCHHHHHHHHHHHhcCC
Q 011106 416 KTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 416 ~~~~~~~~~l~~ai~~~l~~~ 436 (493)
. + .+++++.++++++
T Consensus 317 --~--~--~l~~~i~~l~~~~ 331 (363)
T cd04955 317 --G--D--DLASLLEELEADP 331 (363)
T ss_pred --c--h--HHHHHHHHHHhCH
Confidence 1 1 2999999999987
No 86
>PLN02275 transferase, transferring glycosyl groups
Probab=98.41 E-value=0.00037 Score=69.10 Aligned_cols=76 Identities=11% Similarity=0.184 Sum_probs=52.4
Q ss_pred CCCeEEee-ccChHH---hhccCCcCceee-c-----cC-chhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEe
Q 011106 344 KRGLLMKN-WAPQLE---VLSHRATCAFLS-H-----CG-WNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEV 412 (493)
Q Consensus 344 ~~nv~~~~-~~pq~~---lL~~~~v~~~I~-H-----gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~ 412 (493)
-+|+.+.. |+|+.+ +|+.+++ +|. + -| -+++.||+++|+|+|+... ..+...|+.. +.|..+
T Consensus 285 l~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv 357 (371)
T PLN02275 285 LRHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLF 357 (371)
T ss_pred CCceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEE
Confidence 35666655 788755 4888887 552 1 12 2479999999999999743 3366666644 578776
Q ss_pred ecCCCCccCHHHHHHHHHHHh
Q 011106 413 ARGKTCEVKHEDVVAKIELVM 433 (493)
Q Consensus 413 ~~~~~~~~~~~~l~~ai~~~l 433 (493)
+ ++++++++|.++|
T Consensus 358 ~-------~~~~la~~i~~l~ 371 (371)
T PLN02275 358 S-------SSSELADQLLELL 371 (371)
T ss_pred C-------CHHHHHHHHHHhC
Confidence 3 4789999988775
No 87
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.40 E-value=0.00021 Score=72.48 Aligned_cols=94 Identities=13% Similarity=0.060 Sum_probs=61.7
Q ss_pred CCCeEEeeccChHHh---hccC--CcCceeecc---C-chhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeec
Q 011106 344 KRGLLMKNWAPQLEV---LSHR--ATCAFLSHC---G-WNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVAR 414 (493)
Q Consensus 344 ~~nv~~~~~~pq~~l---L~~~--~v~~~I~Hg---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~ 414 (493)
.++|.+..++++.++ ++.+ +.++||... | -.+++||+++|+|+|+... ......+... ..|..++.
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv~~~-~~G~lv~~ 390 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDIIANC-RNGLLVDV 390 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHhcCC-CcEEEeCC
Confidence 356777777776554 5544 123476543 3 3489999999999998754 3345555533 46777765
Q ss_pred CCCCccCHHHHHHHHHHHhcCCchhHHHHHHHH
Q 011106 415 GKTCEVKHEDVVAKIELVMNETDKGKEIRRKVS 447 (493)
Q Consensus 415 ~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~ 447 (493)
-++++++++|.++++|++..+.+.++++
T Consensus 391 -----~d~~~la~~i~~ll~~~~~~~~~~~~a~ 418 (439)
T TIGR02472 391 -----LDLEAIASALEDALSDSSQWQLWSRNGI 418 (439)
T ss_pred -----CCHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 5889999999999998833233444443
No 88
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.37 E-value=0.00035 Score=71.25 Aligned_cols=204 Identities=16% Similarity=0.117 Sum_probs=102.7
Q ss_pred ccccchhHHHHHHHhcCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHH
Q 011106 222 IEEFDQIGFIYLKRKLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAM 301 (493)
Q Consensus 222 ~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~ 301 (493)
...+|.+++. ..+-++.|||-.+.+... .....++..+-+.-.+++++|-+--||-..-=...+..+++
T Consensus 368 IfPFE~~~y~----~~gv~v~yVGHPL~d~i~-------~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~ 436 (608)
T PRK01021 368 ILPFEQNLFK----DSPLRTVYLGHPLVETIS-------SFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQ 436 (608)
T ss_pred cCccCHHHHH----hcCCCeEEECCcHHhhcc-------cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHH
Confidence 4456666553 356789999954433310 01223334444443445678999999875312233444566
Q ss_pred HHH--h--CCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCC-CCeEEeeccChHHhhccCCcCceeeccCchhH
Q 011106 302 ALE--A--SGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSK-RGLLMKNWAPQLEVLSHRATCAFLSHCGWNSV 376 (493)
Q Consensus 302 al~--~--~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~ 376 (493)
+.+ . .+.++++...... ..+.+.+...+.+ -.+.+..--...++++.+++ .+.-+|- -+
T Consensus 437 aa~~~~l~~~l~fvvp~a~~~-------------~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aT 500 (608)
T PRK01021 437 AFLASSLASTHQLLVSSANPK-------------YDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IV 500 (608)
T ss_pred HHHHHHhccCeEEEEecCchh-------------hHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HH
Confidence 655 3 2345555433210 1111121111001 12222211012578888886 5554543 57
Q ss_pred HHHHHhCCcEeccc-ccccchhhHHHHhh-----------hhceeEEeecC-CCCccCHHHHHHHHHHHhcCCchhHHHH
Q 011106 377 LEALIHGVPIIGWP-MAAEQFFNAKFLEQ-----------EMGVCVEVARG-KTCEVKHEDVVAKIELVMNETDKGKEIR 443 (493)
Q Consensus 377 ~eal~~GvP~l~~P-~~~DQ~~na~~v~~-----------~lG~G~~~~~~-~~~~~~~~~l~~ai~~~l~~~~~~~~~~ 443 (493)
+|+..+|+||+++= ...=-+.-|+++.+ .+|=.+..+-- .....+++.|.+++ ++|.|++.-+.++
T Consensus 501 LEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~ 579 (608)
T PRK01021 501 LETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQK 579 (608)
T ss_pred HHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHH
Confidence 89999999999852 22122234555553 11111111110 01468999999997 8888873333444
Q ss_pred HHHHHHHHHH
Q 011106 444 RKVSEVREMI 453 (493)
Q Consensus 444 ~~a~~l~~~~ 453 (493)
+..+++++.+
T Consensus 580 ~~l~~lr~~L 589 (608)
T PRK01021 580 DACRDLYQAM 589 (608)
T ss_pred HHHHHHHHHh
Confidence 4445554444
No 89
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.35 E-value=0.00017 Score=68.89 Aligned_cols=360 Identities=13% Similarity=0.123 Sum_probs=189.6
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCC-eEEEEEeCccch--hhhhccCCCCCCceEEeccCCCCCCCCCCCCCCC
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKN-YSITFVSTPLNI--KKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENC 81 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~G-h~Vt~~~~~~~~--~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~ 81 (493)
++||+++ ++++=.+.-+-.|.+++.+ .+ .+..++.+.... +.... .+....+..+ .+...
T Consensus 3 ~~Kv~~I-~GTRPE~iKmapli~~~~~--~~~~~~~vi~TGQH~d~em~~~------~le~~~i~~p--------dy~L~ 65 (383)
T COG0381 3 MLKVLTI-FGTRPEAIKMAPLVKALEK--DPDFELIVIHTGQHRDYEMLDQ------VLELFGIRKP--------DYDLN 65 (383)
T ss_pred ceEEEEE-EecCHHHHHHhHHHHHHHh--CCCCceEEEEecccccHHHHHH------HHHHhCCCCC--------Ccchh
Confidence 4556555 5999999999999999999 66 777777666555 33332 1122222211 10000
Q ss_pred CCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEEC--Ccch-hhHHHHHHcCCceEEEechhHHHHHHHhhhc
Q 011106 82 DVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIAD--IFFG-WTCGVAKELNVFHAIFSGSGSYGLACYYSFW 158 (493)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D--~~~~-~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~ 158 (493)
...+. ..+..........+.+++.+.+ ||+|++. ..+. +++.+|..++||+.-+-.+.-+.
T Consensus 66 i~~~~---~tl~~~t~~~i~~~~~vl~~~k-----PD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~-------- 129 (383)
T COG0381 66 IMKPG---QTLGEITGNIIEGLSKVLEEEK-----PDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRTG-------- 129 (383)
T ss_pred ccccC---CCHHHHHHHHHHHHHHHHHhhC-----CCEEEEeCCcchHHHHHHHHHHhCCceEEEecccccC--------
Confidence 00001 2233444556678889999988 9999864 4443 56789999999988764321000
Q ss_pred ccCCCCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhcC
Q 011106 159 TNLPHNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKLG 238 (493)
Q Consensus 159 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 238 (493)
... +|. -... +.... -++..+.++-. .. -..+++-.+
T Consensus 130 -----------~~~---~PE-----------E~NR------------~l~~~--~S~~hfapte~--ar--~nLl~EG~~ 166 (383)
T COG0381 130 -----------DLY---FPE-----------EINR------------RLTSH--LSDLHFAPTEI--AR--KNLLREGVP 166 (383)
T ss_pred -----------CCC---CcH-----------HHHH------------HHHHH--hhhhhcCChHH--HH--HHHHHcCCC
Confidence 000 111 0000 00000 01111111110 00 011222233
Q ss_pred C-ceeeccccccccccccccCCCCCCChhhHHhh-ccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHh----C-CCcEE
Q 011106 239 L-SVWPVGPILLSLENRANAGKEGGTSIKFCKEW-LDSKDENSVLYISFGSMNTISASQMMQLAMALEA----S-GKNFI 311 (493)
Q Consensus 239 ~-~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~----~-~~~vi 311 (493)
+ ++..+|-...+.-.... . ....+...... ++.. .+..|.|++=-..+.. +-+..+.+++.+ . +..||
T Consensus 167 ~~~IfvtGnt~iDal~~~~--~-~~~~~~~~~~~~~~~~-~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~vi 241 (383)
T COG0381 167 EKRIFVTGNTVIDALLNTR--D-RVLEDSKILAKGLDDK-DKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVI 241 (383)
T ss_pred ccceEEeCChHHHHHHHHH--h-hhccchhhHHhhhccc-cCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEE
Confidence 3 46667755433200000 0 00001111111 2222 2348888765444433 444555554444 3 34444
Q ss_pred EEEcCCCCCCCCcchhcccCCchhHH-HHhccCCCCeEEe---eccChHHhhccCCcCceeeccCchhHHHHHHhCCcEe
Q 011106 312 WVVRPPIGFDINSEFRASEWLPEGFE-ERIRDSKRGLLMK---NWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPII 387 (493)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~nv~~~---~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l 387 (493)
..+..+. .. ..+. ...+ +.+++++. +|.+...++.++.+ ++|-+|. -.-||-..|+|.+
T Consensus 242 yp~H~~~------~v-------~e~~~~~L~-~~~~v~li~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl 304 (383)
T COG0381 242 YPVHPRP------RV-------RELVLKRLK-NVERVKLIDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVL 304 (383)
T ss_pred EeCCCCh------hh-------hHHHHHHhC-CCCcEEEeCCcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEE
Confidence 4443221 00 1111 1111 13456655 46777889999875 8887763 4568999999999
Q ss_pred cccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCCh
Q 011106 388 GWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSS 467 (493)
Q Consensus 388 ~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~ 467 (493)
++=..-+|+. +++ . |.-+.+. .+.+.|.+++.++++++ +..+|. +++. +.-| -
T Consensus 305 ~lR~~TERPE---~v~-a-gt~~lvg------~~~~~i~~~~~~ll~~~----~~~~~m-------~~~~----npYg-d 357 (383)
T COG0381 305 VLRDTTERPE---GVE-A-GTNILVG------TDEENILDAATELLEDE----EFYERM-------SNAK----NPYG-D 357 (383)
T ss_pred eeccCCCCcc---cee-c-CceEEeC------ccHHHHHHHHHHHhhCh----HHHHHH-------hccc----CCCc-C
Confidence 9988888887 444 4 4444443 57899999999999988 555443 3333 4444 3
Q ss_pred HHHHHHHHHHHHhhcccccccc
Q 011106 468 VKAMDDFLSAAISMKNKINGRV 489 (493)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~ 489 (493)
..+-++|++.+.+.....+.+.
T Consensus 358 g~as~rIv~~l~~~~~~~~~~~ 379 (383)
T COG0381 358 GNASERIVEILLNYFDSLVRKP 379 (383)
T ss_pred cchHHHHHHHHHHHhhhcccch
Confidence 3477888888888777665554
No 90
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.35 E-value=0.00072 Score=67.36 Aligned_cols=93 Identities=15% Similarity=0.201 Sum_probs=59.8
Q ss_pred CeEE-eeccCh---HHhhccCCcCceeec---cC-chhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCC
Q 011106 346 GLLM-KNWAPQ---LEVLSHRATCAFLSH---CG-WNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKT 417 (493)
Q Consensus 346 nv~~-~~~~pq---~~lL~~~~v~~~I~H---gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~ 417 (493)
++.. ..++++ ..++..+++ +|.= -| -.++.||+++|+|+|+... ......++.. +.|..++.
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~--- 330 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPP--- 330 (388)
T ss_pred ceEEecCCCCHHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCC---
Confidence 3543 356775 446788886 5532 23 3467999999999998654 3455666644 57888765
Q ss_pred Ccc----CHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 011106 418 CEV----KHEDVVAKIELVMNETDKGKEIRRKVSE 448 (493)
Q Consensus 418 ~~~----~~~~l~~ai~~~l~~~~~~~~~~~~a~~ 448 (493)
... ..+++.++|.++++|++..+.+.+++++
T Consensus 331 ~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~ 365 (388)
T TIGR02149 331 DNSDADGFQAELAKAINILLADPELAKKMGIAGRK 365 (388)
T ss_pred CCCcccchHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 222 1289999999999888333334444443
No 91
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.33 E-value=0.0001 Score=72.39 Aligned_cols=80 Identities=18% Similarity=0.031 Sum_probs=57.2
Q ss_pred CCCeEEeeccCh-HHhhccCCcCceeec----cCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCC
Q 011106 344 KRGLLMKNWAPQ-LEVLSHRATCAFLSH----CGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTC 418 (493)
Q Consensus 344 ~~nv~~~~~~pq-~~lL~~~~v~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 418 (493)
.+++.+..+..+ .+++..+++ +|.- |--.++.||+++|+|+|+....+ ....+. . +.|.....
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~-~-~~~~~~~~---- 315 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLT-D-LVKFLSLD---- 315 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhc-c-CccEEeCC----
Confidence 467888787555 668888887 4432 44568999999999999865443 334444 4 55555443
Q ss_pred ccCHHHHHHHHHHHhcCC
Q 011106 419 EVKHEDVVAKIELVMNET 436 (493)
Q Consensus 419 ~~~~~~l~~ai~~~l~~~ 436 (493)
-++++++++|.++++|+
T Consensus 316 -~~~~~~a~~i~~l~~~~ 332 (358)
T cd03812 316 -ESPEIWAEEILKLKSED 332 (358)
T ss_pred -CCHHHHHHHHHHHHhCc
Confidence 35899999999999999
No 92
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.31 E-value=0.00018 Score=70.13 Aligned_cols=201 Identities=20% Similarity=0.220 Sum_probs=104.7
Q ss_pred ccccchhHHHHHHHhcCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHH
Q 011106 222 IEEFDQIGFIYLKRKLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAM 301 (493)
Q Consensus 222 ~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~ 301 (493)
...+|++++. ..+-++.|||-.+.+... .........+.+ -.+++++|.+--||-..-=...+..+++
T Consensus 140 ifPFE~~~y~----~~g~~~~~VGHPl~d~~~-------~~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~ 207 (373)
T PF02684_consen 140 IFPFEPEFYK----KHGVPVTYVGHPLLDEVK-------PEPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLE 207 (373)
T ss_pred CCcccHHHHh----ccCCCeEEECCcchhhhc-------cCCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHH
Confidence 4456665443 345689999944433311 111233333333 2234669999999875311122233444
Q ss_pred HHHh-----CCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeec-cChHHhhccCCcCceeeccCchh
Q 011106 302 ALEA-----SGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNW-APQLEVLSHRATCAFLSHCGWNS 375 (493)
Q Consensus 302 al~~-----~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~-~pq~~lL~~~~v~~~I~HgG~gs 375 (493)
+.+. .+.++++.+.... ..+.+.........++.+.-. -.-.+++..+++ ++++.| ..
T Consensus 208 aa~~l~~~~p~l~fvvp~a~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~-al~~SG--Ta 271 (373)
T PF02684_consen 208 AAKLLKKQRPDLQFVVPVAPEV-------------HEELIEEILAEYPPDVSIVIIEGESYDAMAAADA-ALAASG--TA 271 (373)
T ss_pred HHHHHHHhCCCeEEEEecCCHH-------------HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc-hhhcCC--HH
Confidence 4433 3556665554321 111111110000223333222 234668888886 444444 46
Q ss_pred HHHHHHhCCcEeccc-ccccchhhHHHHhhh--h---------ceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHH
Q 011106 376 VLEALIHGVPIIGWP-MAAEQFFNAKFLEQE--M---------GVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIR 443 (493)
Q Consensus 376 ~~eal~~GvP~l~~P-~~~DQ~~na~~v~~~--l---------G~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~ 443 (493)
++|+..+|+|||++= ...=-+..|+++.+. . .+-..+- ....+++.|.+++..+|.|+ ..+
T Consensus 272 TLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEli---Q~~~~~~~i~~~~~~ll~~~----~~~ 344 (373)
T PF02684_consen 272 TLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELI---QEDATPENIAAELLELLENP----EKR 344 (373)
T ss_pred HHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhh---cccCCHHHHHHHHHHHhcCH----HHH
Confidence 789999999999873 222233345554421 0 1111222 36789999999999999998 555
Q ss_pred HHHHHHHHHHHHhh
Q 011106 444 RKVSEVREMIKNAM 457 (493)
Q Consensus 444 ~~a~~l~~~~~~~~ 457 (493)
+..+...+.+++.+
T Consensus 345 ~~~~~~~~~~~~~~ 358 (373)
T PF02684_consen 345 KKQKELFREIRQLL 358 (373)
T ss_pred HHHHHHHHHHHHhh
Confidence 55555555555444
No 93
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.28 E-value=5.6e-05 Score=74.23 Aligned_cols=91 Identities=15% Similarity=0.174 Sum_probs=60.9
Q ss_pred CCCeEEeeccChH---HhhccCCcCceeec----cCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCC
Q 011106 344 KRGLLMKNWAPQL---EVLSHRATCAFLSH----CGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGK 416 (493)
Q Consensus 344 ~~nv~~~~~~pq~---~lL~~~~v~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 416 (493)
.+++.+.+++|+. ++++.+++ +|.- |..+++.||+++|+|+|+-... .....+. ..|..+..
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~---~~~~~~~~-- 320 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAG---DAALYFDP-- 320 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----Cccceec---CceeeeCC--
Confidence 6789999999875 46777776 3322 3345899999999999986542 2222232 23555544
Q ss_pred CCccCHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 011106 417 TCEVKHEDVVAKIELVMNETDKGKEIRRKVSE 448 (493)
Q Consensus 417 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~ 448 (493)
-+.+++.++|.++++|++..+.+.+++++
T Consensus 321 ---~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 349 (365)
T cd03809 321 ---LDPEALAAAIERLLEDPALREELRERGLA 349 (365)
T ss_pred ---CCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 37999999999999988333344444443
No 94
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.28 E-value=0.0031 Score=66.86 Aligned_cols=96 Identities=18% Similarity=0.192 Sum_probs=64.1
Q ss_pred CCCeEEeeccCh-HHhhccCCcCceee---ccC-chhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCC
Q 011106 344 KRGLLMKNWAPQ-LEVLSHRATCAFLS---HCG-WNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTC 418 (493)
Q Consensus 344 ~~nv~~~~~~pq-~~lL~~~~v~~~I~---HgG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 418 (493)
.++|++.+|.++ ..+|+.+++ ||. +.| -+++.||+++|+|+|+.... .....|... ..|..++. .
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~---~ 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPA---D 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCC---C
Confidence 467888888876 567888887 543 455 45888999999999997642 345556533 46888876 5
Q ss_pred ccCHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 011106 419 EVKHEDVVAKIELVMNETDKGKEIRRKVSEV 449 (493)
Q Consensus 419 ~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l 449 (493)
..+++++.+++.+++.+...-+.+++++++.
T Consensus 643 d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~ 673 (694)
T PRK15179 643 TVTAPDVAEALARIHDMCAADPGIARKAADW 673 (694)
T ss_pred CCChHHHHHHHHHHHhChhccHHHHHHHHHH
Confidence 5667777778777765431111566555443
No 95
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.27 E-value=7.9e-05 Score=74.61 Aligned_cols=92 Identities=23% Similarity=0.263 Sum_probs=63.4
Q ss_pred CCCeEEeeccCh-HHhhccCCcCcee--ec--cCch-hHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCC
Q 011106 344 KRGLLMKNWAPQ-LEVLSHRATCAFL--SH--CGWN-SVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKT 417 (493)
Q Consensus 344 ~~nv~~~~~~pq-~~lL~~~~v~~~I--~H--gG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~ 417 (493)
.++|.+.+++++ ..+++.+++ +| ++ .|.+ .+.||+++|+|+|+.+...+... +.. |.|+.+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i~-----~~~-~~g~lv~---- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGID-----ALP-GAELLVA---- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccccc-----ccC-CcceEeC----
Confidence 568888899987 568888887 54 32 4544 69999999999999875433211 113 5666553
Q ss_pred CccCHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 011106 418 CEVKHEDVVAKIELVMNETDKGKEIRRKVSEV 449 (493)
Q Consensus 418 ~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l 449 (493)
-++++++++|.++++|++..+.+.+++++.
T Consensus 347 --~~~~~la~ai~~ll~~~~~~~~~~~~ar~~ 376 (397)
T TIGR03087 347 --ADPADFAAAILALLANPAEREELGQAARRR 376 (397)
T ss_pred --CCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 378999999999999883333444444443
No 96
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.25 E-value=5.7e-06 Score=80.56 Aligned_cols=133 Identities=14% Similarity=0.165 Sum_probs=76.7
Q ss_pred CCCcEEEEeccCCcCCC-H---HHHHHHHHHHHhC-CCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEe
Q 011106 276 DENSVLYISFGSMNTIS-A---SQMMQLAMALEAS-GKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMK 350 (493)
Q Consensus 276 ~~~~~V~vs~GS~~~~~-~---~~~~~i~~al~~~-~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~ 350 (493)
.+++.|+|++=...... + ..+..++.++.+. +.++||...... . ....+.+...+ -+++++.
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p-------~-----~~~~i~~~l~~-~~~v~~~ 244 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNP-------R-----GSDIIIEKLKK-YDNVRLI 244 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-H-------H-----HHHHHHHHHTT--TTEEEE
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCc-------h-----HHHHHHHHhcc-cCCEEEE
Confidence 44679999985555544 3 3455566666665 778888886431 1 11122222221 1488887
Q ss_pred eccCh---HHhhccCCcCceeeccCchhHH-HHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHH
Q 011106 351 NWAPQ---LEVLSHRATCAFLSHCGWNSVL-EALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVV 426 (493)
Q Consensus 351 ~~~pq---~~lL~~~~v~~~I~HgG~gs~~-eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~ 426 (493)
+-+++ ..+|+++++ +|+.+| ++. ||.++|+|.|.+ -|+...=+-+. . |..+-+. .+.++|.
T Consensus 245 ~~l~~~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~i---R~~geRqe~r~-~-~~nvlv~------~~~~~I~ 309 (346)
T PF02350_consen 245 EPLGYEEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNI---RDSGERQEGRE-R-GSNVLVG------TDPEAII 309 (346)
T ss_dssp ----HHHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEEC---SSS-S-HHHHH-T-TSEEEET------SSHHHHH
T ss_pred CCCCHHHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEe---cCCCCCHHHHh-h-cceEEeC------CCHHHHH
Confidence 76654 668888886 999999 566 999999999999 33333222222 3 4444432 6899999
Q ss_pred HHHHHHhcCC
Q 011106 427 AKIELVMNET 436 (493)
Q Consensus 427 ~ai~~~l~~~ 436 (493)
+++++++++.
T Consensus 310 ~ai~~~l~~~ 319 (346)
T PF02350_consen 310 QAIEKALSDK 319 (346)
T ss_dssp HHHHHHHH-H
T ss_pred HHHHHHHhCh
Confidence 9999999864
No 97
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.25 E-value=0.00013 Score=71.65 Aligned_cols=127 Identities=13% Similarity=0.183 Sum_probs=82.7
Q ss_pred EEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChH---H
Q 011106 281 LYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQL---E 357 (493)
Q Consensus 281 V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~---~ 357 (493)
.++..|++.. ...+..++++++..+.+++++-.+. ..+.+.. .. .+||.+.+++|+. .
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g~--------------~~~~l~~-~~--~~~V~~~g~~~~~~~~~ 257 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDGP--------------ELDRLRA-KA--GPNVTFLGRVSDEELRD 257 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECCh--------------hHHHHHh-hc--CCCEEEecCCCHHHHHH
Confidence 3445566653 2335557777887777765554322 1111111 22 6899999999984 4
Q ss_pred hhccCCcCceeeccCch-hHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 358 VLSHRATCAFLSHCGWN-SVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 358 lL~~~~v~~~I~HgG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
+++.+++-++-+.-|+| ++.||+++|+|+|+....+ ....+... +.|..++. -+.++++++|.++++++
T Consensus 258 ~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~-----~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 258 LYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE-----QTVESLAAAVERFEKNE 327 (351)
T ss_pred HHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC-----CCHHHHHHHHHHHHhCc
Confidence 67788873322334444 5679999999999976433 34445544 57887765 47899999999999987
No 98
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.15 E-value=0.0023 Score=64.29 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=49.9
Q ss_pred EeeccChHHhhccCCcCceeec----cCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHH
Q 011106 349 MKNWAPQLEVLSHRATCAFLSH----CGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHED 424 (493)
Q Consensus 349 ~~~~~pq~~lL~~~~v~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~ 424 (493)
+..+.+..+++...++ ||.- +=-.++.||+++|+|+|+.-..+. ..+..- +-|... -+.++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~~-----~~v~~~-~ng~~~-------~~~~~ 352 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-----EFFKQF-PNCRTY-------DDGKG 352 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCCc-----ceeecC-CceEec-------CCHHH
Confidence 4455566678888876 7765 335688999999999999864432 323322 333332 26889
Q ss_pred HHHHHHHHhcCC
Q 011106 425 VVAKIELVMNET 436 (493)
Q Consensus 425 l~~ai~~~l~~~ 436 (493)
+.+++.++|.++
T Consensus 353 ~a~ai~~~l~~~ 364 (462)
T PLN02846 353 FVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHccC
Confidence 999999999865
No 99
>PLN02949 transferase, transferring glycosyl groups
Probab=98.12 E-value=0.0015 Score=66.40 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=69.8
Q ss_pred CCCeEEeeccChHH---hhccCCcCceee---ccCch-hHHHHHHhCCcEecccccccchhhHHHHhhhh-c-eeEEeec
Q 011106 344 KRGLLMKNWAPQLE---VLSHRATCAFLS---HCGWN-SVLEALIHGVPIIGWPMAAEQFFNAKFLEQEM-G-VCVEVAR 414 (493)
Q Consensus 344 ~~nv~~~~~~pq~~---lL~~~~v~~~I~---HgG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~l-G-~G~~~~~ 414 (493)
.++|.+..++|+.+ +|+.+++ +|+ +-|+| ++.||+++|+|+|+....+-- ...+...- | .|.. .
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l--~ 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFL--A 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCccccc--C
Confidence 46788889998654 6777775 552 23444 799999999999998643210 00111000 1 1221 1
Q ss_pred CCCCccCHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHhhcc
Q 011106 415 GKTCEVKHEDVVAKIELVMNE-TDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAISMKN 483 (493)
Q Consensus 415 ~~~~~~~~~~l~~ai~~~l~~-~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 483 (493)
-+.++++++|.+++++ ++.-+.+.+++++..+++ |..+..+++.+.+++..+
T Consensus 407 -----~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~F------------S~e~~~~~~~~~i~~l~~ 459 (463)
T PLN02949 407 -----TTVEEYADAILEVLRMRETERLEIAAAARKRANRF------------SEQRFNEDFKDAIRPILN 459 (463)
T ss_pred -----CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc------------CHHHHHHHHHHHHHHHHh
Confidence 2789999999999985 322234555555544333 355666777776665543
No 100
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.11 E-value=0.0034 Score=64.49 Aligned_cols=84 Identities=10% Similarity=-0.011 Sum_probs=51.7
Q ss_pred CCCeEEeeccChH---HhhccCCcCceeec---cCc-hhHHHHHHhCCcEecccccc--cchhhHHHHhhhhceeEEeec
Q 011106 344 KRGLLMKNWAPQL---EVLSHRATCAFLSH---CGW-NSVLEALIHGVPIIGWPMAA--EQFFNAKFLEQEMGVCVEVAR 414 (493)
Q Consensus 344 ~~nv~~~~~~pq~---~lL~~~~v~~~I~H---gG~-gs~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~G~~~~~ 414 (493)
+.++++..-.++. .+++.+++ ++.- -|+ .+.+||+++|+|+|+....+ |--.+.....+. |.|..++.
T Consensus 350 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~ 426 (476)
T cd03791 350 PGRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEG 426 (476)
T ss_pred CCcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCC
Confidence 4567654433442 46777776 5532 233 36789999999999765432 211111111123 57888865
Q ss_pred CCCCccCHHHHHHHHHHHhcC
Q 011106 415 GKTCEVKHEDVVAKIELVMNE 435 (493)
Q Consensus 415 ~~~~~~~~~~l~~ai~~~l~~ 435 (493)
-+++++.+++.++++.
T Consensus 427 -----~~~~~l~~~i~~~l~~ 442 (476)
T cd03791 427 -----YNADALLAALRRALAL 442 (476)
T ss_pred -----CCHHHHHHHHHHHHHH
Confidence 5789999999999863
No 101
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.06 E-value=0.0041 Score=63.68 Aligned_cols=83 Identities=12% Similarity=0.085 Sum_probs=51.4
Q ss_pred CCCeEE-eeccCh--HHhhccCCcCceee---ccCch-hHHHHHHhCCcEecccccc--cchhhHHHHhhhhceeEEeec
Q 011106 344 KRGLLM-KNWAPQ--LEVLSHRATCAFLS---HCGWN-SVLEALIHGVPIIGWPMAA--EQFFNAKFLEQEMGVCVEVAR 414 (493)
Q Consensus 344 ~~nv~~-~~~~pq--~~lL~~~~v~~~I~---HgG~g-s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~G~~~~~ 414 (493)
+.++.+ ..|-.+ ..+++.+++ +|. +-|+| +.+||+++|+|.|+....+ |.-.+...-... +-|..++.
T Consensus 336 ~~~v~~~~g~~~~~~~~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~ 412 (466)
T PRK00654 336 PGKVGVQIGYDEALAHRIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDD 412 (466)
T ss_pred CCcEEEEEeCCHHHHHHHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCC
Confidence 445543 355322 246788887 553 34555 7889999999999865422 211111100123 56877765
Q ss_pred CCCCccCHHHHHHHHHHHhc
Q 011106 415 GKTCEVKHEDVVAKIELVMN 434 (493)
Q Consensus 415 ~~~~~~~~~~l~~ai~~~l~ 434 (493)
-+++++.++|.++++
T Consensus 413 -----~d~~~la~~i~~~l~ 427 (466)
T PRK00654 413 -----FNAEDLLRALRRALE 427 (466)
T ss_pred -----CCHHHHHHHHHHHHH
Confidence 588999999999986
No 102
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=97.98 E-value=0.019 Score=61.17 Aligned_cols=93 Identities=13% Similarity=0.087 Sum_probs=57.2
Q ss_pred CCeEEeecc-Ch---HHhhcc-CC-cCceee---ccCch-hHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeec
Q 011106 345 RGLLMKNWA-PQ---LEVLSH-RA-TCAFLS---HCGWN-SVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVAR 414 (493)
Q Consensus 345 ~nv~~~~~~-pq---~~lL~~-~~-v~~~I~---HgG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~ 414 (493)
++|.+..+. +. .+++.+ ++ -++||. .=|+| ++.||+++|+|+|+--. ...+..|+.- .-|..+++
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV~dg-~tGfLVdp 693 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEIIQDG-VSGFHIDP 693 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEEeCC
Confidence 567766653 32 344542 21 123553 23333 88999999999998643 3456666633 45888876
Q ss_pred CCCCccCHHHHHHHHHHHh----cCCchhHHHHHHHH
Q 011106 415 GKTCEVKHEDVVAKIELVM----NETDKGKEIRRKVS 447 (493)
Q Consensus 415 ~~~~~~~~~~l~~ai~~~l----~~~~~~~~~~~~a~ 447 (493)
-++++++++|.+++ .|++..+.+.++++
T Consensus 694 -----~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~ 725 (784)
T TIGR02470 694 -----YHGEEAAEKIVDFFEKCDEDPSYWQKISQGGL 725 (784)
T ss_pred -----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 57899999998876 56633344444443
No 103
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.92 E-value=0.012 Score=60.41 Aligned_cols=83 Identities=8% Similarity=-0.013 Sum_probs=52.8
Q ss_pred CCCeEEeeccChH---HhhccCCcCceeec---cCch-hHHHHHHhCCcEecccccc--cchhhHHHHhhhhceeEEeec
Q 011106 344 KRGLLMKNWAPQL---EVLSHRATCAFLSH---CGWN-SVLEALIHGVPIIGWPMAA--EQFFNAKFLEQEMGVCVEVAR 414 (493)
Q Consensus 344 ~~nv~~~~~~pq~---~lL~~~~v~~~I~H---gG~g-s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~G~~~~~ 414 (493)
+.++.+....++. .+++.+++ +|.- -|+| +.+||+++|+|+|+-...+ |.-.+...-... +.|..++.
T Consensus 345 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~~ 421 (473)
T TIGR02095 345 PGNVRVIIGYDEALAHLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFEE 421 (473)
T ss_pred CCcEEEEEcCCHHHHHHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeCC
Confidence 5567665555553 47777886 5532 3444 7789999999999865432 211111000112 56777765
Q ss_pred CCCCccCHHHHHHHHHHHhc
Q 011106 415 GKTCEVKHEDVVAKIELVMN 434 (493)
Q Consensus 415 ~~~~~~~~~~l~~ai~~~l~ 434 (493)
-++++++++|.+++.
T Consensus 422 -----~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 422 -----YDPGALLAALSRALR 436 (473)
T ss_pred -----CCHHHHHHHHHHHHH
Confidence 588999999999987
No 104
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.90 E-value=0.0022 Score=63.63 Aligned_cols=91 Identities=16% Similarity=0.213 Sum_probs=57.4
Q ss_pred CCCeEEeecc--Ch---HHhhccCCcCceeecc---C-chhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeec
Q 011106 344 KRGLLMKNWA--PQ---LEVLSHRATCAFLSHC---G-WNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVAR 414 (493)
Q Consensus 344 ~~nv~~~~~~--pq---~~lL~~~~v~~~I~Hg---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~ 414 (493)
.+++.+..+. ++ .++++.+++ |+.-+ | -.++.||+++|+|+|+.... .....+... ..|..++
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeC-
Confidence 4567777776 43 356777776 66433 3 34899999999999987542 233445433 4565443
Q ss_pred CCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 011106 415 GKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSE 448 (493)
Q Consensus 415 ~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~ 448 (493)
+.+.++.+|.+++++++..+.+.+++++
T Consensus 323 ------~~~~~a~~i~~ll~~~~~~~~~~~~a~~ 350 (372)
T cd03792 323 ------TVEEAAVRILYLLRDPELRRKMGANARE 350 (372)
T ss_pred ------CcHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 3567888999999887333334444444
No 105
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.86 E-value=0.00021 Score=62.17 Aligned_cols=93 Identities=19% Similarity=0.260 Sum_probs=67.6
Q ss_pred CCCeEEeeccC--h-HHhhccCCcCceeec----cCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCC
Q 011106 344 KRGLLMKNWAP--Q-LEVLSHRATCAFLSH----CGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGK 416 (493)
Q Consensus 344 ~~nv~~~~~~p--q-~~lL~~~~v~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 416 (493)
..++.+..+.+ + ..++..+++ +|+. |...++.||+++|+|+|+. |...+...+... +.|..++.
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~~-- 142 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFDP-- 142 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEEST--
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceeeccc-cceEEeCC--
Confidence 46888889998 3 567888886 6665 5566999999999999974 456666667645 66888876
Q ss_pred CCccCHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 011106 417 TCEVKHEDVVAKIELVMNETDKGKEIRRKVSE 448 (493)
Q Consensus 417 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~ 448 (493)
.+.+++.++|.+++++++.-+.+.+++++
T Consensus 143 ---~~~~~l~~~i~~~l~~~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 143 ---NDIEELADAIEKLLNDPELRQKLGKNARE 171 (172)
T ss_dssp ---TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence 39999999999999988444445555443
No 106
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.84 E-value=0.0035 Score=63.19 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=53.4
Q ss_pred CCCeEEeeccChH---HhhccCCcCceeec---cCc-hhHHHHHHhCCcEecccccccchhhHHHHh---hhhceeEEee
Q 011106 344 KRGLLMKNWAPQL---EVLSHRATCAFLSH---CGW-NSVLEALIHGVPIIGWPMAAEQFFNAKFLE---QEMGVCVEVA 413 (493)
Q Consensus 344 ~~nv~~~~~~pq~---~lL~~~~v~~~I~H---gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~---~~lG~G~~~~ 413 (493)
.++|.+..++|+. .+|+.+++ +|+- -|+ -++.||+++|+|+|+.-..+.- ...++ .. ..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~g-~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIVVPWDGG-PTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hheeeccCCC-CceEEe-
Confidence 4688898999875 47777776 4432 122 3789999999999986532211 11121 12 456542
Q ss_pred cCCCCccCHHHHHHHHHHHhcCC
Q 011106 414 RGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 414 ~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
. ++++++++|.++++++
T Consensus 377 ----~--d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 ----S--TAEEYAEAIEKILSLS 393 (419)
T ss_pred ----C--CHHHHHHHHHHHHhCC
Confidence 2 7899999999999876
No 107
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.82 E-value=0.0036 Score=62.01 Aligned_cols=102 Identities=19% Similarity=0.191 Sum_probs=72.6
Q ss_pred CCCeEEeeccCh-HHhhccCCcCceeec--cCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCcc
Q 011106 344 KRGLLMKNWAPQ-LEVLSHRATCAFLSH--CGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEV 420 (493)
Q Consensus 344 ~~nv~~~~~~pq-~~lL~~~~v~~~I~H--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~ 420 (493)
+.++.+..+.++ ..+++.+++-++.++ |...++.||+++|+|+|+..... .....+... ..|..++. -
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~-----~ 330 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK-----G 330 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC-----C
Confidence 456777777766 568888887444444 23458999999999999864321 234445534 56777754 5
Q ss_pred CHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Q 011106 421 KHEDVVAKIELVMNETDKGKEIRRKVSEVREMIK 454 (493)
Q Consensus 421 ~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~ 454 (493)
+.++++++|.+++++++..+.+.+++++.++.+.
T Consensus 331 d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~s 364 (372)
T cd04949 331 DIEALAEAIIELLNDPKLLQKFSEAAYENAERYS 364 (372)
T ss_pred cHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999998666677777777766654
No 108
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.75 E-value=0.047 Score=56.87 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=52.2
Q ss_pred CeEEeeccChH-HhhccCCcCceeec----cCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCcc
Q 011106 346 GLLMKNWAPQL-EVLSHRATCAFLSH----CGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEV 420 (493)
Q Consensus 346 nv~~~~~~pq~-~lL~~~~v~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~ 420 (493)
++.+..+.++. ++++.+++ ||.- |=-.++.||+++|+|+|+....+... +. . |.+..+. -
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~-~-g~nGll~------~ 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FR-S-FPNCLTY------K 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Ee-e-cCCeEec------C
Confidence 35566666654 48888886 6542 23458889999999999987654322 22 2 3332332 3
Q ss_pred CHHHHHHHHHHHhcCC
Q 011106 421 KHEDVVAKIELVMNET 436 (493)
Q Consensus 421 ~~~~l~~ai~~~l~~~ 436 (493)
+.+++.++|.++|.++
T Consensus 667 D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 667 TSEDFVAKVKEALANE 682 (794)
T ss_pred CHHHHHHHHHHHHhCc
Confidence 6899999999999988
No 109
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.0004 Score=55.39 Aligned_cols=109 Identities=18% Similarity=0.190 Sum_probs=71.7
Q ss_pred EEEeccCCcCCCHHHHHH--HHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeec--cCh-
Q 011106 281 LYISFGSMNTISASQMMQ--LAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNW--APQ- 355 (493)
Q Consensus 281 V~vs~GS~~~~~~~~~~~--i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~--~pq- 355 (493)
+||+-||....-...+.. +.+-.+....++|+.+|.. ...| -.+.++..| .+-
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~------------d~kp----------vagl~v~~F~~~~ki 59 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG------------DIKP----------VAGLRVYGFDKEEKI 59 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC------------Cccc----------ccccEEEeechHHHH
Confidence 789999984311122222 4444444567899999865 2233 122344444 343
Q ss_pred HHhhccCCcCceeeccCchhHHHHHHhCCcEecccccc--------cchhhHHHHhhhhceeEEeec
Q 011106 356 LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAA--------EQFFNAKFLEQEMGVCVEVAR 414 (493)
Q Consensus 356 ~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~--------DQ~~na~~v~~~lG~G~~~~~ 414 (493)
..+...+++ +|+|+|.||++.++..++|.|++|-.. .|-.-|..+++. +.=+...+
T Consensus 60 Qsli~darI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~-~~vv~~sp 123 (161)
T COG5017 60 QSLIHDARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEI-NYVVACSP 123 (161)
T ss_pred HHHhhcceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhc-CceEEEcC
Confidence 556666776 999999999999999999999999533 377788888844 66655554
No 110
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.69 E-value=0.0022 Score=63.78 Aligned_cols=116 Identities=10% Similarity=0.125 Sum_probs=75.3
Q ss_pred CCCeEEeeccChH---HhhccCCcCceeec----cCc-hhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecC
Q 011106 344 KRGLLMKNWAPQL---EVLSHRATCAFLSH----CGW-NSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARG 415 (493)
Q Consensus 344 ~~nv~~~~~~pq~---~lL~~~~v~~~I~H----gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~ 415 (493)
+.++.+..++|+. ++++.+++ +|.. .|+ .++.||+++|+|+|+.... .+...+... ..|..+..
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~~- 327 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEG-ITGYHLAE- 327 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccC-CceEEEeC-
Confidence 4678888999864 45888887 5542 343 4678999999999997653 345555533 46764432
Q ss_pred CCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHhhc
Q 011106 416 KTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAISMK 482 (493)
Q Consensus 416 ~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 482 (493)
..+.++++++|.++++|+ ..++.+++.++.. .+.-+-...++++.+.+.++.
T Consensus 328 ---~~d~~~la~~I~~ll~d~----~~~~~~~~ar~~~--------~~~fsw~~~a~~~~~~l~~~~ 379 (380)
T PRK15484 328 ---PMTSDSIISDINRTLADP----ELTQIAEQAKDFV--------FSKYSWEGVTQRFEEQIHNWF 379 (380)
T ss_pred ---CCCHHHHHHHHHHHHcCH----HHHHHHHHHHHHH--------HHhCCHHHHHHHHHHHHHHhc
Confidence 358999999999999988 4332222222222 223345667777777776654
No 111
>PLN00142 sucrose synthase
Probab=97.69 E-value=0.019 Score=61.28 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=44.8
Q ss_pred cCch-hHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHH----hcCCchhHHHHHH
Q 011106 371 CGWN-SVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELV----MNETDKGKEIRRK 445 (493)
Q Consensus 371 gG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~----l~~~~~~~~~~~~ 445 (493)
-|+| ++.||+++|+|+|+-.. ......|+.- .-|..+++ -++++++++|.++ +.|++..+.+.++
T Consensus 677 EgFGLvvLEAMA~GlPVVATdv----GG~~EIV~dG-~tG~LV~P-----~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~ 746 (815)
T PLN00142 677 EAFGLTVVEAMTCGLPTFATCQ----GGPAEIIVDG-VSGFHIDP-----YHGDEAANKIADFFEKCKEDPSYWNKISDA 746 (815)
T ss_pred cCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEEeCC-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4555 89999999999998643 3455566533 35888876 4788888887654 4677444445555
Q ss_pred HH
Q 011106 446 VS 447 (493)
Q Consensus 446 a~ 447 (493)
++
T Consensus 747 Ar 748 (815)
T PLN00142 747 GL 748 (815)
T ss_pred HH
Confidence 43
No 112
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.64 E-value=0.0016 Score=64.89 Aligned_cols=143 Identities=22% Similarity=0.266 Sum_probs=76.5
Q ss_pred CCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChH
Q 011106 277 ENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQL 356 (493)
Q Consensus 277 ~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~ 356 (493)
++.++|.||.+.....++.+..-.+.|+..+.-.+|...... ... ..+-..+. +.+-.++.+.+.++.++.
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~-----~~~---~~l~~~~~-~~Gv~~~Ri~f~~~~~~~ 353 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA-----SGE---ARLRRRFA-AHGVDPDRIIFSPVAPRE 353 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST-----THH---HHHHHHHH-HTTS-GGGEEEEE---HH
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH-----HHH---HHHHHHHH-HcCCChhhEEEcCCCCHH
Confidence 356999999999999999999999999999988888876442 000 00111111 111115668888887765
Q ss_pred Hhh---ccCCcCce---eeccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHH
Q 011106 357 EVL---SHRATCAF---LSHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIE 430 (493)
Q Consensus 357 ~lL---~~~~v~~~---I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~ 430 (493)
+-| ...+| + ...+|..|++|||+.|||+|..|--.=.-..+.-+-..+|+.-.+.. +.++-.+.--
T Consensus 354 ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~------s~~eYv~~Av 425 (468)
T PF13844_consen 354 EHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD------SEEEYVEIAV 425 (468)
T ss_dssp HHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S------SHHHHHHHHH
T ss_pred HHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC------CHHHHHHHHH
Confidence 433 44554 3 45688999999999999999999432222333333335587765543 4444444333
Q ss_pred HHhcCC
Q 011106 431 LVMNET 436 (493)
Q Consensus 431 ~~l~~~ 436 (493)
++-+|.
T Consensus 426 ~La~D~ 431 (468)
T PF13844_consen 426 RLATDP 431 (468)
T ss_dssp HHHH-H
T ss_pred HHhCCH
Confidence 566666
No 113
>PLN02316 synthase/transferase
Probab=97.63 E-value=0.076 Score=58.39 Aligned_cols=119 Identities=8% Similarity=-0.052 Sum_probs=68.1
Q ss_pred CCCeEEeeccChH---HhhccCCcCceeec---cCc-hhHHHHHHhCCcEecccccc--cchhhH----HHHhhh--hce
Q 011106 344 KRGLLMKNWAPQL---EVLSHRATCAFLSH---CGW-NSVLEALIHGVPIIGWPMAA--EQFFNA----KFLEQE--MGV 408 (493)
Q Consensus 344 ~~nv~~~~~~pq~---~lL~~~~v~~~I~H---gG~-gs~~eal~~GvP~l~~P~~~--DQ~~na----~~v~~~--lG~ 408 (493)
+++|.+....+.. .+++.+++ |+.- =|. .+.+||+++|+|.|+....+ |.-... .+-+.. -+-
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~t 976 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPN 976 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCc
Confidence 3456655444543 47777776 6632 233 38899999999988764422 211110 000001 135
Q ss_pred eEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHH
Q 011106 409 CVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAI 479 (493)
Q Consensus 409 G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 479 (493)
|..++. .+++.|..+|.++|.+ |.+..+.+++..+..| ...-|-.+.+++.++..+
T Consensus 977 Gflf~~-----~d~~aLa~AL~raL~~------~~~~~~~~~~~~r~~m----~~dFSW~~~A~~Y~~LY~ 1032 (1036)
T PLN02316 977 GFSFDG-----ADAAGVDYALNRAISA------WYDGRDWFNSLCKRVM----EQDWSWNRPALDYMELYH 1032 (1036)
T ss_pred eEEeCC-----CCHHHHHHHHHHHHhh------hhhhHHHHHHHHHHHH----HhhCCHHHHHHHHHHHHH
Confidence 777754 6899999999999974 2333444566666555 555544445555544443
No 114
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.53 E-value=0.0036 Score=62.85 Aligned_cols=97 Identities=13% Similarity=0.235 Sum_probs=66.1
Q ss_pred CCCeEEeeccChHH---hhccCCcCceeeccC----chhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCC
Q 011106 344 KRGLLMKNWAPQLE---VLSHRATCAFLSHCG----WNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGK 416 (493)
Q Consensus 344 ~~nv~~~~~~pq~~---lL~~~~v~~~I~HgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 416 (493)
..+|.+.+|+++.+ ++..+++++||...- -.+++||+++|+|+|+-.. ......+... +.|..+..
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i~~~-~~G~l~~~-- 360 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIVDNG-GNGLLLSK-- 360 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHhcCC-CcEEEeCC--
Confidence 35688889999764 455444445765443 4579999999999998543 3355566533 47877753
Q ss_pred CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 011106 417 TCEVKHEDVVAKIELVMNETDKGKEIRRKVSEV 449 (493)
Q Consensus 417 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l 449 (493)
.-+.++++++|.++++|++..+.++++|++.
T Consensus 361 --~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~ 391 (407)
T cd04946 361 --DPTPNELVSSLSKFIDNEEEYQTMREKAREK 391 (407)
T ss_pred --CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3578999999999999884434445554443
No 115
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.52 E-value=0.12 Score=51.31 Aligned_cols=79 Identities=20% Similarity=0.183 Sum_probs=52.9
Q ss_pred CCCeEEeeccChHH---hhccCCcCcee------eccCc-hhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEee
Q 011106 344 KRGLLMKNWAPQLE---VLSHRATCAFL------SHCGW-NSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVA 413 (493)
Q Consensus 344 ~~nv~~~~~~pq~~---lL~~~~v~~~I------~HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~ 413 (493)
.+||++.+++|+.+ .++++++..+- +.++. +.+.|++++|+|+|+.++ ...++.. + |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-D-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-C-cEEEe
Confidence 47999999998755 57778873221 22333 358999999999998763 2223322 3 33333
Q ss_pred cCCCCccCHHHHHHHHHHHhcCC
Q 011106 414 RGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 414 ~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
. -+.+++.++|.+++.++
T Consensus 324 ~-----~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 A-----DDPEEFVAAIEKALLED 341 (373)
T ss_pred C-----CCHHHHHHHHHHHHhcC
Confidence 3 28999999999987655
No 116
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.39 E-value=0.034 Score=57.09 Aligned_cols=94 Identities=13% Similarity=0.178 Sum_probs=64.5
Q ss_pred CCCeEEeeccChHHhhccCCcCceeec----cCchhHHHHHHhCCcEecccccccchhhHHHHhhh----hc-eeEEeec
Q 011106 344 KRGLLMKNWAPQLEVLSHRATCAFLSH----CGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQE----MG-VCVEVAR 414 (493)
Q Consensus 344 ~~nv~~~~~~pq~~lL~~~~v~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~----lG-~G~~~~~ 414 (493)
.++|.+.+...-.++++.+++ +|.- |--.++.||+++|+|+|+- |.......++.. +| .|..++.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceEEECC
Confidence 467888785555778888887 4432 3345899999999999985 444445555531 12 6777765
Q ss_pred CCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 011106 415 GKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSE 448 (493)
Q Consensus 415 ~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~ 448 (493)
-+.++++++|.++++|++..+.+.+++++
T Consensus 427 -----~d~~~la~ai~~ll~~~~~~~~~~~~a~~ 455 (475)
T cd03813 427 -----ADPEALARAILRLLKDPELRRAMGEAGRK 455 (475)
T ss_pred -----CCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 58999999999999988444444444443
No 117
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.38 E-value=0.0069 Score=60.77 Aligned_cols=114 Identities=16% Similarity=0.190 Sum_probs=74.6
Q ss_pred CCCeEEeeccChHH---hhccCCcCceee--c-------cCc-hhHHHHHHhCCcEecccccccchhhHHHHhhhhceeE
Q 011106 344 KRGLLMKNWAPQLE---VLSHRATCAFLS--H-------CGW-NSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCV 410 (493)
Q Consensus 344 ~~nv~~~~~~pq~~---lL~~~~v~~~I~--H-------gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~ 410 (493)
.++|.+..|+|+.+ +++.+++ ||. + -|. .+++||+++|+|+|+.... .....++.. ..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-CceE
Confidence 46788999999854 6777887 553 2 344 4689999999999987543 344455533 4677
Q ss_pred EeecCCCCccCHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHh
Q 011106 411 EVARGKTCEVKHEDVVAKIELVMN-ETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAIS 480 (493)
Q Consensus 411 ~~~~~~~~~~~~~~l~~ai~~~l~-~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 480 (493)
.++. -+.++++++|.++++ |++..+.+.+++++..+ +.-+.....+++.+.+++
T Consensus 351 lv~~-----~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~-----------~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 351 LVPE-----NDAQALAQRLAAFSQLDTDELAPVVKRAREKVE-----------TDFNQQVINRELASLLQA 405 (406)
T ss_pred EeCC-----CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-----------HhcCHHHHHHHHHHHHhh
Confidence 7764 589999999999998 77333344444443322 222345566666665543
No 118
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.31 E-value=0.066 Score=55.05 Aligned_cols=103 Identities=18% Similarity=0.200 Sum_probs=67.8
Q ss_pred CCCeEEeeccChHHhhccCCcCceee---ccCc-hhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCC--C
Q 011106 344 KRGLLMKNWAPQLEVLSHRATCAFLS---HCGW-NSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGK--T 417 (493)
Q Consensus 344 ~~nv~~~~~~pq~~lL~~~~v~~~I~---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~--~ 417 (493)
.++|.+.++.+-.++++.+++ +|. .-|+ .+++||+++|+|+|+....+ .+...++.. .-|..++.+. .
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g-~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDN-KNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCC-CCEEEEeCCcccc
Confidence 456888888888889999887 554 2344 48899999999999965421 234444422 3577666310 0
Q ss_pred CccC-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 011106 418 CEVK-HEDVVAKIELVMNETDKGKEIRRKVSEVREMI 453 (493)
Q Consensus 418 ~~~~-~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~ 453 (493)
..-+ .++++++|.++++++ ..+.|.++|++.++.+
T Consensus 449 d~~~~~~~la~~I~~ll~~~-~~~~~~~~a~~~a~~f 484 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSN-DIDAFHEYSYQIAEGF 484 (500)
T ss_pred chhHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHhc
Confidence 0112 788999999999644 4456677777666555
No 119
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.30 E-value=0.18 Score=48.57 Aligned_cols=219 Identities=17% Similarity=0.158 Sum_probs=115.4
Q ss_pred ccccchhHHHHHHHhcCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHH
Q 011106 222 IEEFDQIGFIYLKRKLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAM 301 (493)
Q Consensus 222 ~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~ 301 (493)
+..+|+++++. .+-...|||--+.+... -....+.+.+-+....+++++.+--||-.+-=...+..+.+
T Consensus 143 ilPFE~~~y~k----~g~~~~yVGHpl~d~i~-------~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~ 211 (381)
T COG0763 143 ILPFEPAFYDK----FGLPCTYVGHPLADEIP-------LLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQ 211 (381)
T ss_pred ecCCCHHHHHh----cCCCeEEeCChhhhhcc-------ccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHH
Confidence 45567665544 34458999955544311 11233445555554555679999999875311112222333
Q ss_pred HHHh-----CCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccCh--HHhhccCCcCceeeccCch
Q 011106 302 ALEA-----SGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQ--LEVLSHRATCAFLSHCGWN 374 (493)
Q Consensus 302 al~~-----~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq--~~lL~~~~v~~~I~HgG~g 374 (493)
+.+. .+.+|++.+.... .+. +.......... ..+..+ .++ .+++..+++ .+.-+|-
T Consensus 212 a~~~l~~~~~~~~~vlp~~~~~-------~~~---~~~~~~~~~~~-~~~~~~---~~~~~~~a~~~aD~--al~aSGT- 274 (381)
T COG0763 212 AAQELKARYPDLKFVLPLVNAK-------YRR---IIEEALKWEVA-GLSLIL---IDGEKRKAFAAADA--ALAASGT- 274 (381)
T ss_pred HHHHHHhhCCCceEEEecCcHH-------HHH---HHHHHhhcccc-CceEEe---cCchHHHHHHHhhH--HHHhccH-
Confidence 3333 4577777765331 000 11111100000 011111 222 336666775 4444443
Q ss_pred hHHHHHHhCCcEecccc-cccchhhHHHHhhhh-----------ceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHH
Q 011106 375 SVLEALIHGVPIIGWPM-AAEQFFNAKFLEQEM-----------GVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEI 442 (493)
Q Consensus 375 s~~eal~~GvP~l~~P~-~~DQ~~na~~v~~~l-----------G~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~ 442 (493)
-+.|+..+|+|||+.== ..=-+.-|++..+.. .+...+- ....+++.|++++..++.|++.-+.+
T Consensus 275 ~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEli---q~~~~pe~la~~l~~ll~~~~~~~~~ 351 (381)
T COG0763 275 ATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELI---QEDCTPENLARALEELLLNGDRREAL 351 (381)
T ss_pred HHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHH---hhhcCHHHHHHHHHHHhcChHhHHHH
Confidence 46799999999998510 001122333333110 1111111 35689999999999999988444456
Q ss_pred HHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHH
Q 011106 443 RRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAI 479 (493)
Q Consensus 443 ~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 479 (493)
++...++.+.+ +.+++++.+.+.+++.+.
T Consensus 352 ~~~~~~l~~~l--------~~~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 352 KEKFRELHQYL--------REDPASEIAAQAVLELLL 380 (381)
T ss_pred HHHHHHHHHHH--------cCCcHHHHHHHHHHHHhc
Confidence 66666666666 555667788888877654
No 120
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.11 E-value=0.06 Score=52.06 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=41.8
Q ss_pred EEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhcc
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSS 53 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~ 53 (493)
||+++-....|++.-+..+.+.|++...+.+|++++.+.+.+.++..
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~ 47 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLH 47 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcC
Confidence 58899999999999999999999996569999999998888777753
No 121
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.90 E-value=0.0037 Score=51.83 Aligned_cols=80 Identities=24% Similarity=0.352 Sum_probs=50.0
Q ss_pred CCCeEEeeccCh-HHhhccCCcCceeec--cC-chhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCc
Q 011106 344 KRGLLMKNWAPQ-LEVLSHRATCAFLSH--CG-WNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCE 419 (493)
Q Consensus 344 ~~nv~~~~~~pq-~~lL~~~~v~~~I~H--gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~ 419 (493)
.++|++.+|+++ .++++.+++....+. .| -+++.|++++|+|+|+.+.. ....++.. +.|..+ .
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~~-~~~~~~-~----- 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEED-GCGVLV-A----- 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE--T-----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheeec-CCeEEE-C-----
Confidence 459999999875 668888888444332 23 47999999999999998761 22233334 788777 3
Q ss_pred cCHHHHHHHHHHHhcC
Q 011106 420 VKHEDVVAKIELVMNE 435 (493)
Q Consensus 420 ~~~~~l~~ai~~~l~~ 435 (493)
-+++++.++|.++++|
T Consensus 120 ~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 120 NDPEELAEAIERLLND 135 (135)
T ss_dssp T-HHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHhcC
Confidence 3999999999999875
No 122
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.84 E-value=0.72 Score=47.42 Aligned_cols=74 Identities=18% Similarity=0.113 Sum_probs=50.9
Q ss_pred CCCeEEeeccCh-HHhhccCCcCceee---ccC-chhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCC
Q 011106 344 KRGLLMKNWAPQ-LEVLSHRATCAFLS---HCG-WNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTC 418 (493)
Q Consensus 344 ~~nv~~~~~~pq-~~lL~~~~v~~~I~---HgG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 418 (493)
.++|++.+|..+ ..+|+.+++ ||. +-| -+++.||+++|+|+|+... ..+...|... ..|..++.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~---- 522 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDD---- 522 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECC----
Confidence 467888888665 567888887 664 344 4589999999999997754 3456666644 56877765
Q ss_pred ccCHHHHHHHH
Q 011106 419 EVKHEDVVAKI 429 (493)
Q Consensus 419 ~~~~~~l~~ai 429 (493)
-+.+.+.+++
T Consensus 523 -~D~~aLa~ai 532 (578)
T PRK15490 523 -AQTVNLDQAC 532 (578)
T ss_pred -CChhhHHHHH
Confidence 2445555554
No 123
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.77 E-value=0.0078 Score=58.65 Aligned_cols=111 Identities=18% Similarity=0.290 Sum_probs=77.1
Q ss_pred CCCeEEeeccChHHhhcc--CCcCceeec-------cCc------hhHHHHHHhCCcEecccccccchhhHHHHhhhhce
Q 011106 344 KRGLLMKNWAPQLEVLSH--RATCAFLSH-------CGW------NSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGV 408 (493)
Q Consensus 344 ~~nv~~~~~~pq~~lL~~--~~v~~~I~H-------gG~------gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~ 408 (493)
.+||...+|+|+.++..+ .+.+++... +.+ +-+.+.+++|+|+|+. ++...+..|++. ++
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~-~~ 280 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN-GL 280 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-Cc
Confidence 578999999999776432 133222211 111 1267789999999985 556788888877 99
Q ss_pred eEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHH
Q 011106 409 CVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLS 476 (493)
Q Consensus 409 G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ 476 (493)
|+.++ +.+++.+++.++. ++ ..+.|+++++++++.++ .|.-..+++++++.
T Consensus 281 G~~v~-------~~~el~~~l~~~~-~~-~~~~m~~n~~~~~~~~~--------~g~~~~~~~~~~~~ 331 (333)
T PRK09814 281 GFVVD-------SLEELPEIIDNIT-EE-EYQEMVENVKKISKLLR--------NGYFTKKALVDAIK 331 (333)
T ss_pred eEEeC-------CHHHHHHHHHhcC-HH-HHHHHHHHHHHHHHHHh--------cchhHHHHHHHHHh
Confidence 99985 4578999998754 33 45579999999999995 45545566666654
No 124
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.069 Score=53.71 Aligned_cols=155 Identities=21% Similarity=0.246 Sum_probs=99.6
Q ss_pred CCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccCh
Q 011106 276 DENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQ 355 (493)
Q Consensus 276 ~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq 355 (493)
+++.+||+||+......++.+..=+.-++..+.-++|..++.. +.+... .+ .+..++.+=+++.+++.+=.|.
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~----~~~~~~--~l-~~la~~~Gv~~eRL~f~p~~~~ 499 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGD----DAEINA--RL-RDLAEREGVDSERLRFLPPAPN 499 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCC----cHHHHH--HH-HHHHHHcCCChhheeecCCCCC
Confidence 3467999999999999999999988899999999999987742 111111 01 1111111111455555555554
Q ss_pred HH---hhccCCcCcee---eccCchhHHHHHHhCCcEecccccccchh--hHHHHhhhhceeEEeecCCCCccCHHHHHH
Q 011106 356 LE---VLSHRATCAFL---SHCGWNSVLEALIHGVPIIGWPMAAEQFF--NAKFLEQEMGVCVEVARGKTCEVKHEDVVA 427 (493)
Q Consensus 356 ~~---lL~~~~v~~~I---~HgG~gs~~eal~~GvP~l~~P~~~DQ~~--na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ 427 (493)
.. =+..+++ |+ --||+.|+.|+|..|||+|..+ ++||. |+.-+...+|+--.+.. -.++-|.+
T Consensus 500 ~~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~-----s~~dYV~~ 570 (620)
T COG3914 500 EDHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVAD-----SRADYVEK 570 (620)
T ss_pred HHHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcC-----CHHHHHHH
Confidence 33 2333444 54 3599999999999999999986 88886 66777755455444433 45677777
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHH
Q 011106 428 KIELVMNETDKGKEIRRKVSEVREMIK 454 (493)
Q Consensus 428 ai~~~l~~~~~~~~~~~~a~~l~~~~~ 454 (493)
+|. +..+ +..+.+.+.+++
T Consensus 571 av~--~g~d------ral~q~~r~~l~ 589 (620)
T COG3914 571 AVA--FGSD------RALRQQVRAELK 589 (620)
T ss_pred HHH--hccc------HHHHHhhHHHHH
Confidence 773 3323 333445555555
No 125
>PRK14099 glycogen synthase; Provisional
Probab=96.64 E-value=1 Score=46.35 Aligned_cols=38 Identities=5% Similarity=0.001 Sum_probs=28.9
Q ss_pred CCCcEEEEECC--------CCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 3 QSKENIVMFPF--------MAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 3 ~~~~~il~~~~--------~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
|+++||+|++. ++.|++ .-+|.++|.+ +||+|.++.+.
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv--~~~lp~~l~~--~g~~v~v~~P~ 46 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADV--AGALPAALKA--HGVEVRTLVPG 46 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHH--HHHHHHHHHH--CCCcEEEEeCC
Confidence 35689999872 445554 5577888999 99999999974
No 126
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.63 E-value=0.21 Score=44.83 Aligned_cols=49 Identities=20% Similarity=0.227 Sum_probs=35.1
Q ss_pred CCCeEEeeccCh---HH-hhccCCcCceeeccC----chhHHHHHHhCCcEeccccccc
Q 011106 344 KRGLLMKNWAPQ---LE-VLSHRATCAFLSHCG----WNSVLEALIHGVPIIGWPMAAE 394 (493)
Q Consensus 344 ~~nv~~~~~~pq---~~-lL~~~~v~~~I~HgG----~gs~~eal~~GvP~l~~P~~~D 394 (493)
..|+.+.+++++ .. ++..+++ +|+-.. .+++.||+.+|+|+|+.+..+.
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 567888888632 22 3343666 776665 6899999999999999886543
No 127
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.57 E-value=0.41 Score=46.98 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=47.3
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhcc
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSS 53 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~ 53 (493)
|+..++||+++-....|++.-+..+.+.|++...+.+|++++.+.+.+.++..
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~ 53 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN 53 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC
Confidence 78778899999999999999999999999996669999999999888877653
No 128
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.31 E-value=0.036 Score=46.09 Aligned_cols=102 Identities=13% Similarity=0.175 Sum_probs=65.9
Q ss_pred EEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCCh
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLPY 86 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~ 86 (493)
||++++.....| ...+++.|.+ +||+|++++.....+.... . .+++++.++.+ . . . .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~--~g~~V~ii~~~~~~~~~~~--~--~~i~~~~~~~~-------~--k---~-~- 57 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKK--RGYDVHIITPRNDYEKYEI--I--EGIKVIRLPSP-------R--K---S-P- 57 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHH--CCCEEEEEEcCCCchhhhH--h--CCeEEEEecCC-------C--C---c-c-
Confidence 578888766666 4577999999 9999999998544322221 1 67777777531 0 0 0 1
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcch---hhHHHHHHcC-CceEEEe
Q 011106 87 NLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFG---WTCGVAKELN-VFHAIFS 144 (493)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~---~~~~~A~~lg-iP~i~~~ 144 (493)
..+. .. -.+..++++.+ ||+|.+..... .+..+++..+ +|++...
T Consensus 58 ---~~~~----~~-~~l~k~ik~~~-----~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~ 106 (139)
T PF13477_consen 58 ---LNYI----KY-FRLRKIIKKEK-----PDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTV 106 (139)
T ss_pred ---HHHH----HH-HHHHHHhccCC-----CCEEEEecCChHHHHHHHHHHHcCCCCEEEEe
Confidence 1111 11 26778888888 99998776543 2345667888 8888543
No 129
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.28 E-value=0.07 Score=53.94 Aligned_cols=125 Identities=19% Similarity=0.278 Sum_probs=82.9
Q ss_pred CCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHH---HhccCCCCeEEeecc
Q 011106 277 ENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEE---RIRDSKRGLLMKNWA 353 (493)
Q Consensus 277 ~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~nv~~~~~~ 353 (493)
++.+||.+|--.-..+++.++.-++-|+..+.-++|..+.... -...|.. +.+-.|+.|.+.+-+
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~------------ge~rf~ty~~~~Gl~p~riifs~va 824 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV------------GEQRFRTYAEQLGLEPDRIIFSPVA 824 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEecccc------------chHHHHHHHHHhCCCccceeecccc
Confidence 3569999999998999999999999999999999999986521 1111111 111115666666665
Q ss_pred ChHHhhccCC-----cCceeeccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeec
Q 011106 354 PQLEVLSHRA-----TCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVAR 414 (493)
Q Consensus 354 pq~~lL~~~~-----v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~ 414 (493)
...+-.++.. ++-+.+ .|+.|.++.|+.|||||.+|.-.--...|.-.--.+|+|--+.+
T Consensus 825 ~k~eHvrr~~LaDv~LDTplc-nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak 889 (966)
T KOG4626|consen 825 AKEEHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK 889 (966)
T ss_pred chHHHHHhhhhhhhcccCcCc-CCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh
Confidence 5544333322 233455 46889999999999999999754333333333335688876554
No 130
>PRK14098 glycogen synthase; Provisional
Probab=96.18 E-value=0.18 Score=51.84 Aligned_cols=113 Identities=13% Similarity=0.088 Sum_probs=68.1
Q ss_pred CCCeEEeeccChH---HhhccCCcCceeecc---Cch-hHHHHHHhCCcEecccccc--cchhhHHHHhhhhceeEEeec
Q 011106 344 KRGLLMKNWAPQL---EVLSHRATCAFLSHC---GWN-SVLEALIHGVPIIGWPMAA--EQFFNAKFLEQEMGVCVEVAR 414 (493)
Q Consensus 344 ~~nv~~~~~~pq~---~lL~~~~v~~~I~Hg---G~g-s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~G~~~~~ 414 (493)
+.+|.+..+.+.. .+++.+++ |+.-+ |+| +.+||+++|+|.|+....+ |.-.+ ..+.. +-|..++.
T Consensus 361 ~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~-~~G~l~~~ 435 (489)
T PRK14098 361 PEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDK-GSGFIFHD 435 (489)
T ss_pred CCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCC-CceeEeCC
Confidence 5678888888774 57888887 55432 333 6789999999888776432 21110 11113 56777765
Q ss_pred CCCCccCHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHh
Q 011106 415 GKTCEVKHEDVVAKIELVMN---ETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAIS 480 (493)
Q Consensus 415 ~~~~~~~~~~l~~ai~~~l~---~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 480 (493)
-+++++.++|.+++. ++ . .+++..++++ ...-|-.+.+++.++..++
T Consensus 436 -----~d~~~la~ai~~~l~~~~~~----~------~~~~~~~~~~----~~~fsw~~~a~~y~~lY~~ 485 (489)
T PRK14098 436 -----YTPEALVAKLGEALALYHDE----E------RWEELVLEAM----ERDFSWKNSAEEYAQLYRE 485 (489)
T ss_pred -----CCHHHHHHHHHHHHHHHcCH----H------HHHHHHHHHh----cCCCChHHHHHHHHHHHHH
Confidence 579999999998763 33 1 1222222334 4555555666666655443
No 131
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.06 E-value=0.84 Score=44.61 Aligned_cols=107 Identities=12% Similarity=0.034 Sum_probs=69.1
Q ss_pred EEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCce-EEeccCCCCCCCCCCCCCCCCCCC
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSID-LHEIPFNSSSHGLPPNSENCDVLP 85 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~-~~~i~~~~~~~~l~~~~~~~~~~~ 85 (493)
||+++-..+.|++.-+..+.+.|++...+.+|++++.+.+.+.++.. +.|. ++.++.. .. ...
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----p~vd~vi~~~~~------~~------~~~ 64 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN----PDINALYGLDRK------KA------KAG 64 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC----CCccEEEEeChh------hh------cch
Confidence 58899999999999999999999996668999999999888877764 2232 2222210 00 000
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEE
Q 011106 86 YNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAI 142 (493)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~ 142 (493)
. ..+.... .+...++..+ +|++|.-........++...|+|..+
T Consensus 65 ~---~~~~~~~-----~l~~~lr~~~-----yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 65 E---RKLANQF-----HLIKVLRANR-----YDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred H---HHHHHHH-----HHHHHHHhCC-----CCEEEECCcchHHHHHHHhcCCCeEE
Confidence 0 0111111 1222334444 99999765555677888888998654
No 132
>PHA01633 putative glycosyl transferase group 1
Probab=95.99 E-value=0.095 Score=50.63 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=61.2
Q ss_pred CCCeEEe---eccChH---HhhccCCcCceeec---cCch-hHHHHHHhCCcEecccc------cccc------hhhHHH
Q 011106 344 KRGLLMK---NWAPQL---EVLSHRATCAFLSH---CGWN-SVLEALIHGVPIIGWPM------AAEQ------FFNAKF 401 (493)
Q Consensus 344 ~~nv~~~---~~~pq~---~lL~~~~v~~~I~H---gG~g-s~~eal~~GvP~l~~P~------~~DQ------~~na~~ 401 (493)
+++|.+. +++++. ++++.+++ ||.- =|+| ++.||+++|+|+|+--. .+|+ ..+...
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 5678776 445553 56777776 6643 3444 78899999999998633 2332 222322
Q ss_pred Hh--hhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 011106 402 LE--QEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMI 453 (493)
Q Consensus 402 v~--~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~ 453 (493)
.. .. |.|..++ ..++++++++|.+++... +-+....++++.++.+
T Consensus 278 ~~~~~~-g~g~~~~-----~~d~~~la~ai~~~~~~~-~~~~~~~~~~~~a~~f 324 (335)
T PHA01633 278 YYDKEH-GQKWKIH-----KFQIEDMANAIILAFELQ-DREERSMKLKELAKKY 324 (335)
T ss_pred hcCccc-Cceeeec-----CCCHHHHHHHHHHHHhcc-ChhhhhHHHHHHHHhc
Confidence 22 23 5666654 479999999999996544 1112334455555544
No 133
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.14 E-value=1.6 Score=41.25 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=40.8
Q ss_pred EEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhcc
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSS 53 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~ 53 (493)
||+++-..+.|++.-+..+.+.|++...+-+|++++.+...+.++..
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~ 47 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM 47 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC
Confidence 58899999999999999999999995445899999999888777764
No 134
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.69 E-value=3.8 Score=38.45 Aligned_cols=106 Identities=17% Similarity=0.119 Sum_probs=70.9
Q ss_pred CCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc--cchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCChhhHH
Q 011106 13 FMAQGHIIPFLALALHIEQRHKNYSITFVSTP--LNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLPYNLVI 90 (493)
Q Consensus 13 ~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~--~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~ 90 (493)
.+..-|+.-|-.|-..|.+ +||+|.+-+-. ...+.+.. .++.+..+..- +.. .. . .
T Consensus 7 I~n~~hvhfFk~lI~elek--kG~ev~iT~rd~~~v~~LLd~-----ygf~~~~Igk~--------g~~---tl-~---~ 64 (346)
T COG1817 7 IGNPPHVHFFKNLIWELEK--KGHEVLITCRDFGVVTELLDL-----YGFPYKSIGKH--------GGV---TL-K---E 64 (346)
T ss_pred cCCcchhhHHHHHHHHHHh--CCeEEEEEEeecCcHHHHHHH-----hCCCeEeeccc--------CCc---cH-H---H
Confidence 3555688889999999999 99998877633 23344443 55566655521 100 00 0 1
Q ss_pred HHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechh
Q 011106 91 HLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSG 147 (493)
Q Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~ 147 (493)
++.... ...-.+.+++.+.+ ||+.+. ..++.+..+|.-+|+|++.+.-+.
T Consensus 65 Kl~~~~-eR~~~L~ki~~~~k-----pdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 65 KLLESA-ERVYKLSKIIAEFK-----PDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred HHHHHH-HHHHHHHHHHhhcC-----CceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 222222 23346778888888 999999 568889999999999999985443
No 135
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=94.51 E-value=0.051 Score=41.92 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=43.7
Q ss_pred hhhHHhhccCCCCCcEEEEeccCCcCC---CH--HHHHHHHHHHHhCCCcEEEEEcCC
Q 011106 265 IKFCKEWLDSKDENSVLYISFGSMNTI---SA--SQMMQLAMALEASGKNFIWVVRPP 317 (493)
Q Consensus 265 ~~~l~~~l~~~~~~~~V~vs~GS~~~~---~~--~~~~~i~~al~~~~~~vi~~~~~~ 317 (493)
+..+..|+...+.++.|+||+||.... .. ..+..++++++..+..+|+.+...
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 345667998888899999999998753 22 478889999999999999999755
No 136
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.15 E-value=0.072 Score=45.01 Aligned_cols=95 Identities=13% Similarity=0.179 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHhhh
Q 011106 20 IPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLPYNLVIHLLRASTSL 99 (493)
Q Consensus 20 ~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (493)
.-+..|++.|.+ +||+|++++.......-+. .. .++.+..++.+.. .. .... . ..
T Consensus 5 ~~~~~l~~~L~~--~G~~V~v~~~~~~~~~~~~-~~--~~~~~~~~~~~~~----~~--------~~~~-~-------~~ 59 (160)
T PF13579_consen 5 RYVRELARALAA--RGHEVTVVTPQPDPEDDEE-EE--DGVRVHRLPLPRR----PW--------PLRL-L-------RF 59 (160)
T ss_dssp HHHHHHHHHHHH--TT-EEEEEEE---GGG-SE-EE--TTEEEEEE--S-S----SS--------GGGH-C-------CH
T ss_pred HHHHHHHHHHHH--CCCEEEEEecCCCCccccc-cc--CCceEEeccCCcc----ch--------hhhh-H-------HH
Confidence 346789999999 9999999996544332211 11 6778887775311 10 0000 0 01
Q ss_pred hHHHHHHH--HHhhcCCCCCcEEEECCcch-hhHHHHH-HcCCceEEEe
Q 011106 100 KPAFKEVI--SSLINQGRPPLCIIADIFFG-WTCGVAK-ELNVFHAIFS 144 (493)
Q Consensus 100 ~~~l~~~l--~~~~~~~~~pDlvI~D~~~~-~~~~~A~-~lgiP~i~~~ 144 (493)
...+..++ ++. +||+|.+..... ....+++ ..++|++...
T Consensus 60 ~~~~~~~l~~~~~-----~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 60 LRRLRRLLAARRE-----RPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp HHHHHHHCHHCT--------SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred HHHHHHHHhhhcc-----CCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 13344444 333 499998875432 3334444 8899998864
No 137
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=94.14 E-value=6 Score=38.40 Aligned_cols=104 Identities=11% Similarity=-0.015 Sum_probs=67.4
Q ss_pred EEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCce-EEeccCCCCCCCCCCCCCCCCCCC
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSID-LHEIPFNSSSHGLPPNSENCDVLP 85 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~-~~~i~~~~~~~~l~~~~~~~~~~~ 85 (493)
||+++-..+.|++.-...+.+.|++...+.+|++++.+.+.+.++.. +.++ ++.++. ...
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----p~id~v~~~~~-------~~~-------- 61 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM----PEIRQAIDMPL-------GHG-------- 61 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC----chhceeeecCC-------ccc--------
Confidence 68999999999999999999999996569999999988877777753 2222 111110 000
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEE
Q 011106 86 YNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAI 142 (493)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~ 142 (493)
. ..+. ....+...++..+ +|++|.-.-......++...|+|.-.
T Consensus 62 ~---~~~~-----~~~~~~~~lr~~~-----yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 62 A---LELT-----ERRRLGRSLREER-----YDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred c---hhhh-----HHHHHHHHHhhcC-----CCEEEECCCCHHHHHHHHHcCCCcee
Confidence 0 0000 0012233344444 99999876566666777777887643
No 138
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=94.12 E-value=1.9 Score=43.33 Aligned_cols=85 Identities=12% Similarity=0.167 Sum_probs=57.2
Q ss_pred HhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEE-eecCCCCccCHHHHHHHHHHHhcC
Q 011106 357 EVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVE-VARGKTCEVKHEDVVAKIELVMNE 435 (493)
Q Consensus 357 ~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~-~~~~~~~~~~~~~l~~ai~~~l~~ 435 (493)
.+++++++ +|..= .=++.-|+..|||.+.+++ |+-. ...++ .+|..-. ++. .+++.++|.+.+.+++++
T Consensus 323 ~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y--~~K~-~~~~~-~lg~~~~~~~~---~~l~~~~Li~~v~~~~~~ 392 (426)
T PRK10017 323 KILGACEL--TVGTR-LHSAIISMNFGTPAIAINY--EHKS-AGIMQ-QLGLPEMAIDI---RHLLDGSLQAMVADTLGQ 392 (426)
T ss_pred HHHhhCCE--EEEec-chHHHHHHHcCCCEEEeee--hHHH-HHHHH-HcCCccEEech---hhCCHHHHHHHHHHHHhC
Confidence 67888775 66522 2246678999999999997 3333 33334 5587755 666 789999999999999987
Q ss_pred CchhHHHHHHHHHHHHHHH
Q 011106 436 TDKGKEIRRKVSEVREMIK 454 (493)
Q Consensus 436 ~~~~~~~~~~a~~l~~~~~ 454 (493)
.+ .++++.++.-++++
T Consensus 393 r~---~~~~~l~~~v~~~r 408 (426)
T PRK10017 393 LP---ALNARLAEAVSRER 408 (426)
T ss_pred HH---HHHHHHHHHHHHHH
Confidence 62 35555444444443
No 139
>PHA01630 putative group 1 glycosyl transferase
Probab=93.88 E-value=0.88 Score=44.18 Aligned_cols=78 Identities=15% Similarity=0.078 Sum_probs=45.4
Q ss_pred ccChH---HhhccCCcCceee-ccC-chhHHHHHHhCCcEecccccc--cchh---hHHHHhh-----------hhceeE
Q 011106 352 WAPQL---EVLSHRATCAFLS-HCG-WNSVLEALIHGVPIIGWPMAA--EQFF---NAKFLEQ-----------EMGVCV 410 (493)
Q Consensus 352 ~~pq~---~lL~~~~v~~~I~-HgG-~gs~~eal~~GvP~l~~P~~~--DQ~~---na~~v~~-----------~lG~G~ 410 (493)
++|+. .+++.+++-++-+ ..| -.++.||+++|+|+|+.-..+ |.-. |+-.++. . ++|.
T Consensus 197 ~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~-~~G~ 275 (331)
T PHA01630 197 PLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPI-HVGY 275 (331)
T ss_pred cCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCc-cccc
Confidence 36654 3678888722222 233 347899999999999976432 2211 2111110 1 2454
Q ss_pred EeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 411 EVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 411 ~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
.++ .+.+++.+++.++|.|.
T Consensus 276 ~v~------~~~~~~~~~ii~~l~~~ 295 (331)
T PHA01630 276 FLD------PDIEDAYQKLLEALANW 295 (331)
T ss_pred ccC------CCHHHHHHHHHHHHhCC
Confidence 443 36788888888888873
No 140
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=93.85 E-value=6.4 Score=37.73 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=42.1
Q ss_pred ChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchh----hHHHHhhhhceeEEeec
Q 011106 354 PQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFF----NAKFLEQEMGVCVEVAR 414 (493)
Q Consensus 354 pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~----na~~v~~~lG~G~~~~~ 414 (493)
|+...|..++. .|||---.+.++||+..|+|+.++|+-. +.. -.+.+++. |+-..+..
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~~-g~~r~~~~ 282 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEER-GAVRPFTG 282 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHHC-CCEEECCC
Confidence 67788988886 6777777899999999999999999876 322 22344434 66555543
No 141
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=93.53 E-value=0.5 Score=35.95 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=38.1
Q ss_pred ccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 370 HCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 370 HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
+|-..-+.|++++|+|+|+-+. ......+. . |.. .-. -. +.+++.++|..+++|+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~-~-~~~--~~~---~~-~~~el~~~i~~ll~~~ 63 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFE-D-GEH--IIT---YN-DPEELAEKIEYLLENP 63 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcC-C-CCe--EEE---EC-CHHHHHHHHHHHHCCH
Confidence 4556688999999999999865 22222222 2 322 221 22 8999999999999988
No 142
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=93.13 E-value=1.1 Score=38.59 Aligned_cols=43 Identities=23% Similarity=0.090 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHc-CCceEEEe
Q 011106 102 AFKEVISSLINQGRPPLCIIADIFFGWTCGVAKEL-NVFHAIFS 144 (493)
Q Consensus 102 ~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~l-giP~i~~~ 144 (493)
.+...+..++.++-.||+||...---.++.+-..+ ++|.+.+.
T Consensus 52 av~~a~~~L~~~Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 52 AVARAARQLRAQGFVPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred HHHHHHHHHHHcCCCCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 44555556666677799999996544566677888 89998874
No 143
>PRK10125 putative glycosyl transferase; Provisional
Probab=92.98 E-value=1.9 Score=43.19 Aligned_cols=101 Identities=15% Similarity=0.114 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhCCCcE-EEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccC-h---HHhhccCCcCcee
Q 011106 294 SQMMQLAMALEASGKNF-IWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAP-Q---LEVLSHRATCAFL 368 (493)
Q Consensus 294 ~~~~~i~~al~~~~~~v-i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~p-q---~~lL~~~~v~~~I 368 (493)
..+..+++|+...+.++ ++.+|... ... ..++....+.. + .++++.+++ ||
T Consensus 256 Kg~~~li~A~~~l~~~~~L~ivG~g~-----------~~~-----------~~~v~~~g~~~~~~~l~~~y~~aDv--fV 311 (405)
T PRK10125 256 KTDQQLVREMMALGDKIELHTFGKFS-----------PFT-----------AGNVVNHGFETDKRKLMSALNQMDA--LV 311 (405)
T ss_pred ccHHHHHHHHHhCCCCeEEEEEcCCC-----------ccc-----------ccceEEecCcCCHHHHHHHHHhCCE--EE
Confidence 33466888888765444 34444321 000 23455455542 2 345566776 55
Q ss_pred ec----cCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHH
Q 011106 369 SH----CGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKI 429 (493)
Q Consensus 369 ~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai 429 (493)
.- |--.++.||+++|+|+|+-...+ ....+. . +-|..+++ -+.++|++++
T Consensus 312 ~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv~-~-~~G~lv~~-----~d~~~La~~~ 365 (405)
T PRK10125 312 FSSRVDNYPLILCEALSIGVPVIATHSDA----AREVLQ-K-SGGKTVSE-----EEVLQLAQLS 365 (405)
T ss_pred ECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhEe-C-CcEEEECC-----CCHHHHHhcc
Confidence 42 33457899999999999987654 233333 4 56887776 4778888754
No 144
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=92.22 E-value=5.7 Score=40.09 Aligned_cols=125 Identities=14% Similarity=0.210 Sum_probs=78.3
Q ss_pred CCcEEEEeccCCcCCCHHHHHHHHHHHHh-CCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEe-eccC
Q 011106 277 ENSVLYISFGSMNTISASQMMQLAMALEA-SGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMK-NWAP 354 (493)
Q Consensus 277 ~~~~V~vs~GS~~~~~~~~~~~i~~al~~-~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~-~~~p 354 (493)
++.+++++ +.+.+..+....++ ++..|=+..+.. ....+..-.. -+|+++. .+.+
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te--------------~s~kL~~L~~--y~nvvly~~~~~ 338 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE--------------MSSKLMSLDK--YDNVKLYPNITT 338 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc--------------ccHHHHHHHh--cCCcEEECCcCh
Confidence 34577776 25666666666666 455655433321 1122211111 3566655 4567
Q ss_pred -h-HHhhccCCcCceeeccC--chhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHH
Q 011106 355 -Q-LEVLSHRATCAFLSHCG--WNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIE 430 (493)
Q Consensus 355 -q-~~lL~~~~v~~~I~HgG--~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~ 430 (493)
+ .+++..+++-+-|+||. ..++.||+.+|+|++..=.... +...+. . |-... .-+.+++.++|.
T Consensus 339 ~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~---~~~~i~---~-g~l~~-----~~~~~~m~~~i~ 406 (438)
T TIGR02919 339 QKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAH---NRDFIA---S-ENIFE-----HNEVDQLISKLK 406 (438)
T ss_pred HHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccC---Cccccc---C-Cceec-----CCCHHHHHHHHH
Confidence 3 77999999988899977 5589999999999998643211 112222 1 33333 346899999999
Q ss_pred HHhcCC
Q 011106 431 LVMNET 436 (493)
Q Consensus 431 ~~l~~~ 436 (493)
++|+++
T Consensus 407 ~lL~d~ 412 (438)
T TIGR02919 407 DLLNDP 412 (438)
T ss_pred HHhcCH
Confidence 999988
No 145
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.78 E-value=12 Score=35.69 Aligned_cols=126 Identities=15% Similarity=0.066 Sum_probs=74.4
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDV 83 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~ 83 (493)
.+.|++++-.|-.||-=+|.-=|..|++ .|.+|.++..-......+=..- ++|+++.++........|.
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~--~gf~VdliGy~~s~p~e~l~~h--prI~ih~m~~l~~~~~~p~------- 79 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAK--LGFQVDLIGYVESIPLEELLNH--PRIRIHGMPNLPFLQGGPR------- 79 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHH--cCCeEEEEEecCCCChHHHhcC--CceEEEeCCCCcccCCCch-------
Confidence 3679999999999998889999999999 9999999975433222211111 8999999995422222111
Q ss_pred CChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEEC-CcchhhHHHH----HHcCCceEEEechhHH
Q 011106 84 LPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIAD-IFFGWTCGVA----KELNVFHAIFSGSGSY 149 (493)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D-~~~~~~~~~A----~~lgiP~i~~~~~~~~ 149 (493)
.+...+..+.....-+..++.. +++|.|+.. +=+.+...++ ...|..+++=|....+
T Consensus 80 ----~~~l~lKvf~Qfl~Ll~aL~~~-----~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Y 141 (444)
T KOG2941|consen 80 ----VLFLPLKVFWQFLSLLWALFVL-----RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGY 141 (444)
T ss_pred ----hhhhHHHHHHHHHHHHHHHHhc-----cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHH
Confidence 0112222222222223333332 348999876 2222333343 4447777776655444
No 146
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=91.43 E-value=2.1 Score=43.51 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=67.3
Q ss_pred eeccChHH---hhccCCcCceee---ccCch-hHHHHHHhCCc----EecccccccchhhHHHHhhhhceeEEeecCCCC
Q 011106 350 KNWAPQLE---VLSHRATCAFLS---HCGWN-SVLEALIHGVP----IIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTC 418 (493)
Q Consensus 350 ~~~~pq~~---lL~~~~v~~~I~---HgG~g-s~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 418 (493)
...+++.+ +++.+++ ++. +=|+| ++.||+++|+| +|+--+.+- +..+ +-|+.+++
T Consensus 341 ~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~~l----~~gllVnP---- 406 (456)
T TIGR02400 341 NRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQEL----NGALLVNP---- 406 (456)
T ss_pred cCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hHHh----CCcEEECC----
Confidence 34566654 4677777 543 34655 77799999999 666544432 2212 34666665
Q ss_pred ccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHH
Q 011106 419 EVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAI 479 (493)
Q Consensus 419 ~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 479 (493)
-+.++++++|.++|+++.. +.+++.+++++.+.. -+...-++.+++.|.
T Consensus 407 -~d~~~lA~aI~~aL~~~~~--er~~r~~~~~~~v~~---------~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 -YDIDGMADAIARALTMPLE--EREERHRAMMDKLRK---------NDVQRWREDFLSDLN 455 (456)
T ss_pred -CCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHhh---------CCHHHHHHHHHHHhh
Confidence 6899999999999987611 455566666666541 235667777777664
No 147
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=91.26 E-value=13 Score=36.23 Aligned_cols=107 Identities=17% Similarity=0.035 Sum_probs=70.6
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCC
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVL 84 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~ 84 (493)
++||+++-....|++.=.+.+-+.|++...+.++++++...+.+.++... .|+-+-+- .. .... .
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p----~I~~vi~~--------~~--~~~~-~ 65 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNP----EIDKVIII--------DK--KKKG-L 65 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcCh----Hhhhhccc--------cc--cccc-c
Confidence 37899999999999999999999999966679999999888877776632 12211110 00 0000 0
Q ss_pred ChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEE
Q 011106 85 PYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAI 142 (493)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~ 142 (493)
. + .....+...++... +|+||.=.-.+-...++...++|.-.
T Consensus 66 ~------~-----~~~~~l~~~lr~~~-----yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 66 G------L-----KERLALLRTLRKER-----YDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred c------h-----HHHHHHHHHhhccC-----CCEEEECcccHHHHHHHHHhCCCccc
Confidence 0 0 11123334444444 99999887777677777788888655
No 148
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=91.12 E-value=0.93 Score=46.83 Aligned_cols=93 Identities=5% Similarity=0.128 Sum_probs=66.5
Q ss_pred CCeEEeeccC--h-HHhhccCCcCceeecc---CchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCC
Q 011106 345 RGLLMKNWAP--Q-LEVLSHRATCAFLSHC---GWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTC 418 (493)
Q Consensus 345 ~nv~~~~~~p--q-~~lL~~~~v~~~I~Hg---G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 418 (493)
..|.+..+.. + ...+.++.+ +|.=+ |.++..||+.+|+|+| .......|+.. .=|.-+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li-~---- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYII-D---- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEe-C----
Confidence 4677878877 4 567777776 77655 6779999999999999 33334444422 335444 2
Q ss_pred ccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Q 011106 419 EVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIK 454 (493)
Q Consensus 419 ~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~ 454 (493)
+..+|.++|..+|.+...++.+...|-+.++++.
T Consensus 474 --d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 474 --DISELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred --CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 7899999999999998666667767766666664
No 149
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.60 E-value=1.4 Score=41.04 Aligned_cols=106 Identities=16% Similarity=0.219 Sum_probs=64.3
Q ss_pred eccChHHhhccCCcCceeeccCchhHHH-HHHhCCcEecccccccchh--hHHHHhhhhceeEEeecCCCCccCHHHHHH
Q 011106 351 NWAPQLEVLSHRATCAFLSHCGWNSVLE-ALIHGVPIIGWPMAAEQFF--NAKFLEQEMGVCVEVARGKTCEVKHEDVVA 427 (493)
Q Consensus 351 ~~~pq~~lL~~~~v~~~I~HgG~gs~~e-al~~GvP~l~~P~~~DQ~~--na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ 427 (493)
.|-...++|-++++ .|- =.||..| ++-.|+|+|.+|-.+-|+. -|.|=.+.||+.+.+-. ..+..-..
T Consensus 301 sqqsfadiLH~ada--alg--mAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-----~~aq~a~~ 371 (412)
T COG4370 301 SQQSFADILHAADA--ALG--MAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-----PEAQAAAQ 371 (412)
T ss_pred eHHHHHHHHHHHHH--HHH--hccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-----CchhhHHH
Confidence 34444555555443 222 2344444 4667999999999999987 66777777888888765 22333333
Q ss_pred HHHHHhcCCchhHHHHHHHH-HHHHHHHHhhhccccCCCChHHHHHHHHHHHHhh
Q 011106 428 KIELVMNETDKGKEIRRKVS-EVREMIKNAMKDEEGCRGSSVKAMDDFLSAAISM 481 (493)
Q Consensus 428 ai~~~l~~~~~~~~~~~~a~-~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 481 (493)
+++++|.|+ .+.++++ .=++++ | +.-+...|-+.+.++
T Consensus 372 ~~q~ll~dp----~r~~air~nGqrRi-----------G-qaGaa~rIAe~l~e~ 410 (412)
T COG4370 372 AVQELLGDP----QRLTAIRHNGQRRI-----------G-QAGAARRIAEELGEM 410 (412)
T ss_pred HHHHHhcCh----HHHHHHHhcchhhc-----------c-CcchHHHHHHHHHHh
Confidence 444599999 6555554 223333 2 223677777777665
No 150
>PLN02939 transferase, transferring glycosyl groups
Probab=89.43 E-value=11 Score=41.41 Aligned_cols=84 Identities=10% Similarity=0.062 Sum_probs=53.3
Q ss_pred CCCeEEeeccChH---HhhccCCcCceeec---cC-chhHHHHHHhCCcEecccccc--cchhh--HHHHhhhhceeEEe
Q 011106 344 KRGLLMKNWAPQL---EVLSHRATCAFLSH---CG-WNSVLEALIHGVPIIGWPMAA--EQFFN--AKFLEQEMGVCVEV 412 (493)
Q Consensus 344 ~~nv~~~~~~pq~---~lL~~~~v~~~I~H---gG-~gs~~eal~~GvP~l~~P~~~--DQ~~n--a~~v~~~lG~G~~~ 412 (493)
.++|.+..+.+.. .+++.+++ ||.- =| -.+.+||+++|+|.|+....+ |--.+ ...+...-+-|..+
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 3568877777764 47888886 6642 23 337899999999999876533 21111 11111111457666
Q ss_pred ecCCCCccCHHHHHHHHHHHhc
Q 011106 413 ARGKTCEVKHEDVVAKIELVMN 434 (493)
Q Consensus 413 ~~~~~~~~~~~~l~~ai~~~l~ 434 (493)
+. .+++.+.++|.+++.
T Consensus 914 ~~-----~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT-----PDEQGLNSALERAFN 930 (977)
T ss_pred cC-----CCHHHHHHHHHHHHH
Confidence 54 588999999988875
No 151
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=89.35 E-value=3.9 Score=35.31 Aligned_cols=114 Identities=15% Similarity=0.096 Sum_probs=58.5
Q ss_pred ECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccc--hhhhh---ccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCC
Q 011106 11 FPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLN--IKKLK---SSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLP 85 (493)
Q Consensus 11 ~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~--~~~v~---~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~ 85 (493)
+-.++.||+.=|+.|.+.+......++..+++.... ...+. +... ...++..++.. . ...
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~--~~~~~~~~~r~---------r----~v~ 67 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSS--KRHKILEIPRA---------R----EVG 67 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhcc--ccceeeccceE---------E----Eec
Confidence 345788999999999999932114455556654432 22111 1111 11123333311 0 001
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcc--hhhHHHHHHc------CCceEEEec
Q 011106 86 YNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFF--GWTCGVAKEL------NVFHAIFSG 145 (493)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~--~~~~~~A~~l------giP~i~~~~ 145 (493)
.......+..+......+ .++.+.+ ||+||+..-. .+...+|+.+ |.+.|.+-+
T Consensus 68 q~~~~~~~~~l~~~~~~~-~il~r~r-----Pdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 68 QSYLTSIFTTLRAFLQSL-RILRRER-----PDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred hhhHhhHHHHHHHHHHHH-HHHHHhC-----CCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 111122222222222222 3334445 9999999443 3566788999 999888754
No 152
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=89.22 E-value=0.9 Score=40.21 Aligned_cols=42 Identities=12% Similarity=-0.028 Sum_probs=27.3
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhh
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKL 50 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v 50 (493)
||||+.-==+. +.--+..|+++|.+ .||+|+++.+...+.-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~--~g~~V~VvAP~~~~Sg~ 42 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSA--LGHDVVVVAPDSEQSGT 42 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTT--TSSEEEEEEESSSTTTS
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHh--cCCeEEEEeCCCCCcCc
Confidence 45665552222 33446789999977 78999999987654443
No 153
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=87.68 E-value=5.5 Score=33.83 Aligned_cols=29 Identities=24% Similarity=0.246 Sum_probs=22.8
Q ss_pred CcccHHHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 15 AQGHIIPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 15 ~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
..|=-.-+..|++.|.+ +||+|+++++..
T Consensus 11 ~GG~e~~~~~l~~~l~~--~G~~v~v~~~~~ 39 (177)
T PF13439_consen 11 IGGAERVVLNLARALAK--RGHEVTVVSPGV 39 (177)
T ss_dssp SSHHHHHHHHHHHHHHH--TT-EEEEEESS-
T ss_pred CChHHHHHHHHHHHHHH--CCCEEEEEEcCC
Confidence 55556678899999999 999999998653
No 154
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=86.66 E-value=2.9 Score=35.33 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=45.5
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEecc
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIP 66 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~ 66 (493)
|..+.+||++.-.|+-|-..-.+.++..|.. +|+.|-=+.++..++-=.. .+++.+.+.
T Consensus 1 ~~~~~mki~ITG~PGvGKtTl~~ki~e~L~~--~g~kvgGf~t~EVR~gGkR-----~GF~Ivdl~ 59 (179)
T COG1618 1 MIKMAMKIFITGRPGVGKTTLVLKIAEKLRE--KGYKVGGFITPEVREGGKR-----IGFKIVDLA 59 (179)
T ss_pred CCCcceEEEEeCCCCccHHHHHHHHHHHHHh--cCceeeeEEeeeeecCCeE-----eeeEEEEcc
Confidence 4556789999999999999999999999999 9999876655544433233 556666666
No 155
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=86.58 E-value=5.4 Score=31.95 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=33.1
Q ss_pred EEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
|+++.+.++-.|.....-++..|.. +|++|.+.....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~--~G~~V~~lg~~~ 37 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRD--AGFEVIDLGVDV 37 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHH--CCCEEEECCCCC
Confidence 5889999999999999999999999 999998876543
No 156
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=85.16 E-value=15 Score=33.87 Aligned_cols=30 Identities=13% Similarity=-0.021 Sum_probs=22.3
Q ss_pred CCcEEEEC----------Ccc---hhhHHHHHHcCCceEEEec
Q 011106 116 PPLCIIAD----------IFF---GWTCGVAKELNVFHAIFSG 145 (493)
Q Consensus 116 ~pDlvI~D----------~~~---~~~~~~A~~lgiP~i~~~~ 145 (493)
+||+||+- .+. ..++.-|..+|||.+.+|.
T Consensus 87 ~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~ 129 (253)
T PRK13933 87 NIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSA 129 (253)
T ss_pred CCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEe
Confidence 49999964 222 3566777889999999975
No 157
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=84.61 E-value=4 Score=41.65 Aligned_cols=73 Identities=16% Similarity=0.096 Sum_probs=47.2
Q ss_pred EeeccChHH---hhccCCcCceee---ccCch-hHHHHHHhCCc----EecccccccchhhHHHHhhhhceeEEeecCCC
Q 011106 349 MKNWAPQLE---VLSHRATCAFLS---HCGWN-SVLEALIHGVP----IIGWPMAAEQFFNAKFLEQEMGVCVEVARGKT 417 (493)
Q Consensus 349 ~~~~~pq~~---lL~~~~v~~~I~---HgG~g-s~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~ 417 (493)
+..++++.+ +++.+++ ||. +-|+| ++.||+++|+| +|+--..+ - +.. +.-|+.+++
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G-~---~~~----~~~g~lv~p--- 411 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG-A---AEE----LSGALLVNP--- 411 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc-c---hhh----cCCCEEECC---
Confidence 335677754 5777777 542 44655 66899999999 44432221 1 110 133566655
Q ss_pred CccCHHHHHHHHHHHhcCC
Q 011106 418 CEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 418 ~~~~~~~l~~ai~~~l~~~ 436 (493)
-+.++++++|.++|+++
T Consensus 412 --~d~~~la~ai~~~l~~~ 428 (460)
T cd03788 412 --YDIDEVADAIHRALTMP 428 (460)
T ss_pred --CCHHHHHHHHHHHHcCC
Confidence 58999999999999977
No 158
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=82.23 E-value=3.4 Score=34.24 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=37.5
Q ss_pred CCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccc
Q 011106 3 QSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLN 46 (493)
Q Consensus 3 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~ 46 (493)
|.+++|++.+.++-+|-.-..-++..|.. +|++|+++.....
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~--~G~eVi~LG~~vp 42 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTE--AGFEVINLGVMTS 42 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHH--CCCEEEECCCCCC
Confidence 35789999999999999999999999999 9999999986543
No 159
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=81.56 E-value=10 Score=35.18 Aligned_cols=90 Identities=14% Similarity=0.086 Sum_probs=53.4
Q ss_pred EEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchh-hhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCC
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIK-KLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLP 85 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~-~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~ 85 (493)
||+++. +.|. -..||+.|.+ +||+|+..+...... .+.+.+. ..++ .. .+ .
T Consensus 2 ~ILvlG--GT~e---gr~la~~L~~--~g~~v~~s~~t~~~~~~~~~~g~----~~v~-~g------~l----------~ 53 (256)
T TIGR00715 2 TVLLMG--GTVD---SRAIAKGLIA--QGIEILVTVTTSEGKHLYPIHQA----LTVH-TG------AL----------D 53 (256)
T ss_pred eEEEEe--chHH---HHHHHHHHHh--CCCeEEEEEccCCccccccccCC----ceEE-EC------CC----------C
Confidence 455554 3332 5689999999 999998877554322 2222110 1110 00 00 0
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcch------hhHHHHHHcCCceEEE
Q 011106 86 YNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFG------WTCGVAKELNVFHAIF 143 (493)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~------~~~~~A~~lgiP~i~~ 143 (493)
...+.+++++.. +|+||--.+-+ -+..+++.+|||++.+
T Consensus 54 --------------~~~l~~~l~~~~-----i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 54 --------------PQELREFLKRHS-----IDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred --------------HHHHHHHHHhcC-----CCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 134667777777 99888554433 3456889999999998
No 160
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=81.46 E-value=15 Score=35.94 Aligned_cols=105 Identities=9% Similarity=-0.054 Sum_probs=69.0
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEE-eccCCCCCCCCCCCCCCCCCC
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLH-EIPFNSSSHGLPPNSENCDVL 84 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~-~i~~~~~~~~l~~~~~~~~~~ 84 (493)
+||+++-..+.|++.-...+.+.|++...+.+|++++.+...+.++.. +.++-+ .++. ...
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~----P~vd~vi~~~~-------~~~------- 62 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM----PEVNEAIPMPL-------GHG------- 62 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC----CccCEEEeccc-------ccc-------
Confidence 479999999999999999999999996669999999998888887764 222211 1110 000
Q ss_pred ChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEE
Q 011106 85 PYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAI 142 (493)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~ 142 (493)
. ..+.. ...+...++..+ +|++|.=.-..-...++...|+|.-+
T Consensus 63 -~---~~~~~-----~~~l~~~lr~~~-----yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 63 -A---LEIGE-----RRRLGHSLREKR-----YDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred -h---hhhHH-----HHHHHHHHHhcC-----CCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0 00000 012223344444 99998765555666778888888654
No 161
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=80.80 E-value=12 Score=34.34 Aligned_cols=100 Identities=18% Similarity=0.113 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHhhhhH
Q 011106 22 FLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLPYNLVIHLLRASTSLKP 101 (493)
Q Consensus 22 ~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (493)
+..|+++|.+ .| +|+++.+...+.-.-....-...+++..+... ++. ........|..... -
T Consensus 16 i~aL~~~l~~--~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~---~~~--~~~~v~GTPaDcv~----------~ 77 (244)
T TIGR00087 16 IRALYQALKE--LG-EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVK---NGA--HIYAVDGTPTDCVI----------L 77 (244)
T ss_pred HHHHHHHHHh--CC-CEEEEeCCCCccccccCcCCCCCeEEEEeccC---CCc--cEEEEcCcHHHHHH----------H
Confidence 6688999998 88 89999877554444332211134444444310 000 01111222221110 1
Q ss_pred HHHHHHHHhhcCCCCCcEEEECC----------c---chhhHHHHHHcCCceEEEec
Q 011106 102 AFKEVISSLINQGRPPLCIIADI----------F---FGWTCGVAKELNVFHAIFSG 145 (493)
Q Consensus 102 ~l~~~l~~~~~~~~~pDlvI~D~----------~---~~~~~~~A~~lgiP~i~~~~ 145 (493)
.+..++. ++||+||+-. + +..+++-|..+|||.+.+|.
T Consensus 78 gl~~l~~------~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 78 GINELMP------EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred HHHHhcc------CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 1222221 2389998642 2 23566777888999999975
No 162
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=79.08 E-value=11 Score=34.55 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHhhhhH
Q 011106 22 FLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLPYNLVIHLLRASTSLKP 101 (493)
Q Consensus 22 ~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (493)
+..|+++|. .+++|+++.+...+.-.-....-...++...+. .........|.+.. .-
T Consensus 16 i~aL~~al~---~~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~---------~~~~av~GTPaDCV----------~l 73 (252)
T COG0496 16 IRALARALR---EGADVTVVAPDREQSGASHSLTLHEPLRVRQVD---------NGAYAVNGTPADCV----------IL 73 (252)
T ss_pred HHHHHHHHh---hCCCEEEEccCCCCcccccccccccCceeeEec---------cceEEecCChHHHH----------HH
Confidence 456777776 499999999876654443322100222222222 11112223333221 12
Q ss_pred HHHHHHHHhhcCCCCCcEEEECC----------c---chhhHHHHHHcCCceEEEechh
Q 011106 102 AFKEVISSLINQGRPPLCIIADI----------F---FGWTCGVAKELNVFHAIFSGSG 147 (493)
Q Consensus 102 ~l~~~l~~~~~~~~~pDlvI~D~----------~---~~~~~~~A~~lgiP~i~~~~~~ 147 (493)
.+..++++.. ||+||+-. + +..+++=|..+|||.|.+|...
T Consensus 74 al~~l~~~~~-----pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~ 127 (252)
T COG0496 74 GLNELLKEPR-----PDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAY 127 (252)
T ss_pred HHHHhccCCC-----CCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehh
Confidence 3444555544 99998642 2 2355666788999999997653
No 163
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=78.70 E-value=15 Score=33.88 Aligned_cols=91 Identities=8% Similarity=-0.022 Sum_probs=55.7
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCC
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLP 85 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~ 85 (493)
++|+++..-+-|+ .||+.|.+ +|+.|++.+...... ... .++..+. ..+
T Consensus 3 ~~IlvlgGT~egr-----~la~~L~~--~g~~v~~Svat~~g~-~~~-----~~~~v~~-----------------G~l- 51 (248)
T PRK08057 3 PRILLLGGTSEAR-----ALARALAA--AGVDIVLSLAGRTGG-PAD-----LPGPVRV-----------------GGF- 51 (248)
T ss_pred ceEEEEechHHHH-----HHHHHHHh--CCCeEEEEEccCCCC-ccc-----CCceEEE-----------------CCC-
Confidence 5678776555554 78999999 899877766443322 111 1111110 011
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEE--ECCcch----hhHHHHHHcCCceEEEe
Q 011106 86 YNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCII--ADIFFG----WTCGVAKELNVFHAIFS 144 (493)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI--~D~~~~----~~~~~A~~lgiP~i~~~ 144 (493)
.....+.+++++.. +++|| +.+|.. -+..+++.+|||++.|.
T Consensus 52 ------------~~~~~l~~~l~~~~-----i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 52 ------------GGAEGLAAYLREEG-----IDLVIDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred ------------CCHHHHHHHHHHCC-----CCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 01246777788777 99987 334432 34568899999999984
No 164
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=78.35 E-value=13 Score=40.76 Aligned_cols=106 Identities=18% Similarity=0.133 Sum_probs=66.1
Q ss_pred ccCh---HHhhccCCcCceee---ccCch-hHHHHHHhCCc---EecccccccchhhHHHHhhhhc-eeEEeecCCCCcc
Q 011106 352 WAPQ---LEVLSHRATCAFLS---HCGWN-SVLEALIHGVP---IIGWPMAAEQFFNAKFLEQEMG-VCVEVARGKTCEV 420 (493)
Q Consensus 352 ~~pq---~~lL~~~~v~~~I~---HgG~g-s~~eal~~GvP---~l~~P~~~DQ~~na~~v~~~lG-~G~~~~~~~~~~~ 420 (493)
++++ .++++.+++ |+. .-|+| ++.|++++|+| +++++-+. ..+.. +| -|+.+.+ .
T Consensus 363 ~v~~~el~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~~----l~~~allVnP-----~ 428 (797)
T PLN03063 363 SVDFNYLCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQS----LGAGALLVNP-----W 428 (797)
T ss_pred CCCHHHHHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchhh----hcCCeEEECC-----C
Confidence 4554 356777887 543 34777 66699999999 44444222 12221 24 5777766 6
Q ss_pred CHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHhhc
Q 011106 421 KHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAISMK 482 (493)
Q Consensus 421 ~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 482 (493)
+.++++++|.++|+.+.. +-+++.+++.+..+.. +...-++.+++.+.+..
T Consensus 429 D~~~lA~AI~~aL~m~~~--er~~r~~~~~~~v~~~---------~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 429 NITEVSSAIKEALNMSDE--ERETRHRHNFQYVKTH---------SAQKWADDFMSELNDII 479 (797)
T ss_pred CHHHHHHHHHHHHhCCHH--HHHHHHHHHHHhhhhC---------CHHHHHHHHHHHHHHHh
Confidence 999999999999995411 3444555555555421 24566777777776654
No 165
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=77.74 E-value=13 Score=32.56 Aligned_cols=100 Identities=14% Similarity=0.160 Sum_probs=51.5
Q ss_pred EEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeC-ccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCChh
Q 011106 9 VMFPFMAQGHIIPFLALALHIEQRHKNYSITFVST-PLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLPYN 87 (493)
Q Consensus 9 l~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~-~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~ 87 (493)
+-+=..+.|-+.-...|+++|.+...|+.|.+-++ +...+.+.+... +.+....+|.+
T Consensus 24 iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~--~~v~~~~~P~D------------------- 82 (186)
T PF04413_consen 24 IWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP--DRVDVQYLPLD------------------- 82 (186)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G--GG-SEEE---S-------------------
T ss_pred EEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC--CCeEEEEeCcc-------------------
Confidence 33334678999999999999998434898887765 334444444321 22233334421
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcc-hhhH-HHHHHcCCceEEEec
Q 011106 88 LVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFF-GWTC-GVAKELNVFHAIFSG 145 (493)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~-~~~~-~~A~~lgiP~i~~~~ 145 (493)
....++.+++.++ ||++|.--.. ++.. ..|+..|||++.+..
T Consensus 83 -----------~~~~~~rfl~~~~-----P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 -----------FPWAVRRFLDHWR-----PDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp -----------SHHHHHHHHHHH-------SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred -----------CHHHHHHHHHHhC-----CCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 1136677889999 9988754344 4333 477888999999853
No 166
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=77.23 E-value=16 Score=33.78 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=26.0
Q ss_pred CCcEEEEECCCCcccHH-HHHHHHHHHHhcCCCeEEEEEeCccch
Q 011106 4 SKENIVMFPFMAQGHII-PFLALALHIEQRHKNYSITFVSTPLNI 47 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~-p~l~LA~~L~~~~~Gh~Vt~~~~~~~~ 47 (493)
++||||+.- --|--. -+..|+++|.+ .| +|+++.+...+
T Consensus 4 ~~M~ILltN--DDGi~a~Gi~aL~~~l~~--~g-~V~VvAP~~~~ 43 (257)
T PRK13932 4 KKPHILVCN--DDGIEGEGIHVLAASMKK--IG-RVTVVAPAEPH 43 (257)
T ss_pred CCCEEEEEC--CCCCCCHHHHHHHHHHHh--CC-CEEEEcCCCCC
Confidence 457887765 222222 36788999988 78 79888876543
No 167
>PRK08006 replicative DNA helicase; Provisional
Probab=77.15 E-value=25 Score=35.91 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=32.8
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhh
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLK 51 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~ 51 (493)
+++..-|+.|=..-.+.+|...... .|+.|.|++-+...+.+.
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~-~g~~V~~fSlEM~~~ql~ 269 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAML-QDKPVLIFSLEMPGEQIM 269 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHHH
Confidence 4455579999999999999888631 699999999876544443
No 168
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=76.34 E-value=32 Score=32.67 Aligned_cols=81 Identities=15% Similarity=0.166 Sum_probs=58.6
Q ss_pred CCeEE-eeccC---hHHhhccCCcCceeec--cCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCC
Q 011106 345 RGLLM-KNWAP---QLEVLSHRATCAFLSH--CGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTC 418 (493)
Q Consensus 345 ~nv~~-~~~~p---q~~lL~~~~v~~~I~H--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 418 (493)
+++.+ .+++| +..+|+.++++-|+|+ =|.|+++-.++.|+|+++- .+=+.|....+ . |+-+-.+. .
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~e-~-gv~Vlf~~---d 277 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLTE-Q-GLPVLFTG---D 277 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHHh-C-CCeEEecC---C
Confidence 56653 35665 4779999999777776 4899999999999999976 45555555444 5 77776666 6
Q ss_pred ccCHHHHHHHHHHHh
Q 011106 419 EVKHEDVVAKIELVM 433 (493)
Q Consensus 419 ~~~~~~l~~ai~~~l 433 (493)
.++...+.++=+++.
T Consensus 278 ~L~~~~v~e~~rql~ 292 (322)
T PRK02797 278 DLDEDIVREAQRQLA 292 (322)
T ss_pred cccHHHHHHHHHHHH
Confidence 788888877644433
No 169
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=75.97 E-value=17 Score=33.58 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhcCCCCCcEEE--ECCcch----hhHHHHHHcCCceEEEe
Q 011106 101 PAFKEVISSLINQGRPPLCII--ADIFFG----WTCGVAKELNVFHAIFS 144 (493)
Q Consensus 101 ~~l~~~l~~~~~~~~~pDlvI--~D~~~~----~~~~~A~~lgiP~i~~~ 144 (493)
..+.+++++.. +|+|| +.+|.. -+..+++.+|||++.+-
T Consensus 56 ~~l~~~l~~~~-----i~~vIDATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 56 EGLAEFLRENG-----IDAVIDATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred HHHHHHHHhCC-----CcEEEECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 46777787777 99998 334432 34568899999999984
No 170
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=75.33 E-value=4.6 Score=33.01 Aligned_cols=44 Identities=9% Similarity=0.075 Sum_probs=36.2
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
|||++...++.+=.. ...+.+.|.+ +|++|.++.++...+.+..
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~--~g~~v~vv~S~~A~~~~~~ 44 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKR--AGWEVRVVLSPSAERFVTP 44 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHT--TTSEEEEEESHHHHHHSHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhh--CCCEEEEEECCcHHHHhhh
Confidence 578888878766666 9999999999 9999999999988777776
No 171
>PRK08506 replicative DNA helicase; Provisional
Probab=75.23 E-value=25 Score=36.06 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=34.2
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhh
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLK 51 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~ 51 (493)
+++..-|+.|=..-.+.+|..... .|+.|.|++.+.....+.
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~--~g~~V~~fSlEMs~~ql~ 236 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALN--QDKGVAFFSLEMPAEQLM 236 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHh--cCCcEEEEeCcCCHHHHH
Confidence 455567899999999999999888 899999999876554444
No 172
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=74.63 E-value=44 Score=29.77 Aligned_cols=147 Identities=12% Similarity=0.087 Sum_probs=80.3
Q ss_pred CcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHH
Q 011106 278 NSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLE 357 (493)
Q Consensus 278 ~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~ 357 (493)
+.++.|+.|.+. ...+..|...+..+.++.. . ..+.+..... ...+.......+..
T Consensus 11 k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~-~--------------~~~~l~~l~~--~~~i~~~~~~~~~~ 66 (202)
T PRK06718 11 KRVVIVGGGKVA-------GRRAITLLKYGAHIVVISP-E--------------LTENLVKLVE--EGKIRWKQKEFEPS 66 (202)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcC-C--------------CCHHHHHHHh--CCCEEEEecCCChh
Confidence 558888777654 2345556667777665542 1 1112221111 23354444445555
Q ss_pred hhccCCcCceeeccCchhHHHHHH----hCCcEecccccccchhh-----HHHHhhhhceeEEeecCCCCccCHHHHHHH
Q 011106 358 VLSHRATCAFLSHCGWNSVLEALI----HGVPIIGWPMAAEQFFN-----AKFLEQEMGVCVEVARGKTCEVKHEDVVAK 428 (493)
Q Consensus 358 lL~~~~v~~~I~HgG~gs~~eal~----~GvP~l~~P~~~DQ~~n-----a~~v~~~lG~G~~~~~~~~~~~~~~~l~~a 428 (493)
.+..+++ +|.--+.-.+.+.++ .++++-+ .|.+.. -..+.+- ++-+.+..+.....-...|++.
T Consensus 67 ~l~~adl--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~~ 139 (202)
T PRK06718 67 DIVDAFL--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHRG-KLTISVSTDGASPKLAKKIRDE 139 (202)
T ss_pred hcCCceE--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEcC-CeEEEEECCCCChHHHHHHHHH
Confidence 6777775 777767666666554 3454433 344332 2333333 4555555422233444678888
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q 011106 429 IELVMNETDKGKEIRRKVSEVREMIKNAM 457 (493)
Q Consensus 429 i~~~l~~~~~~~~~~~~a~~l~~~~~~~~ 457 (493)
|.+++.. ....+-+.+.++++.+++..
T Consensus 140 ie~~~~~--~~~~~~~~~~~~R~~~k~~~ 166 (202)
T PRK06718 140 LEALYDE--SYESYIDFLYECRQKIKELQ 166 (202)
T ss_pred HHHHcch--hHHHHHHHHHHHHHHHHHhC
Confidence 8887732 34467788888888887543
No 173
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=74.41 E-value=11 Score=39.10 Aligned_cols=78 Identities=10% Similarity=0.052 Sum_probs=47.7
Q ss_pred ChHHhhccCCcCceee---ccCch-hHHHHHHhCCcEecccccc-cchhhHHHHhhhhc--eeEEeec--CCCCccCHHH
Q 011106 354 PQLEVLSHRATCAFLS---HCGWN-SVLEALIHGVPIIGWPMAA-EQFFNAKFLEQEMG--VCVEVAR--GKTCEVKHED 424 (493)
Q Consensus 354 pq~~lL~~~~v~~~I~---HgG~g-s~~eal~~GvP~l~~P~~~-DQ~~na~~v~~~lG--~G~~~~~--~~~~~~~~~~ 424 (493)
+..++++.+++ +|. +=|+| ++.||+++|+|+|+....+ .... ..+... | .|+.+.. ..+..-+.++
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v--~E~v~~-~~~~gi~V~~r~~~~~~e~v~~ 541 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM--EEHIED-PESYGIYIVDRRFKSPDESVQQ 541 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh--HHHhcc-CCCceEEEecCCccchHHHHHH
Confidence 35667777776 444 35655 8899999999999987532 2211 212211 2 4666653 1112346788
Q ss_pred HHHHHHHHhcCC
Q 011106 425 VVAKIELVMNET 436 (493)
Q Consensus 425 l~~ai~~~l~~~ 436 (493)
|++++.++++.+
T Consensus 542 La~~m~~~~~~~ 553 (590)
T cd03793 542 LTQYMYEFCQLS 553 (590)
T ss_pred HHHHHHHHhCCc
Confidence 888888888554
No 174
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=74.32 E-value=27 Score=33.60 Aligned_cols=42 Identities=21% Similarity=0.159 Sum_probs=34.0
Q ss_pred cEEEEECC-CCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhh
Q 011106 6 ENIVMFPF-MAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKK 49 (493)
Q Consensus 6 ~~il~~~~-~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~ 49 (493)
.||+|++. |+-|=..-..++|-.|++ .|+.|.++++......
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~--~g~kvLlvStDPAhsL 44 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAE--SGKKVLLVSTDPAHSL 44 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHH--cCCcEEEEEeCCCCch
Confidence 57888885 899999999999999999 9988888876654333
No 175
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=74.13 E-value=27 Score=31.09 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=34.5
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
+.|+++.+.++-.|-....-++..|.. +|++|+++...
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~--~G~~vi~lG~~ 119 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEA--NGFEVIDLGRD 119 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHH--CCCEEEECCCC
Confidence 569999999999999999999999999 99999988654
No 176
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=73.79 E-value=24 Score=33.98 Aligned_cols=47 Identities=9% Similarity=0.034 Sum_probs=41.7
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
|||+++-..+.|++.-...+.+.|++...+.+|++++.+.+.+.++.
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~ 47 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSW 47 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhc
Confidence 48999999999999999999999999656999999999888777664
No 177
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=73.60 E-value=31 Score=34.73 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=33.3
Q ss_pred EEEECCCCcccHHHHHHHHHHHH-hcCCCeEEEEEeCccchhhhh
Q 011106 8 IVMFPFMAQGHIIPFLALALHIE-QRHKNYSITFVSTPLNIKKLK 51 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~-~~~~Gh~Vt~~~~~~~~~~v~ 51 (493)
+++..-|+.|=..-++.+|..+. + .|+.|.|++.+.....+.
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~--~g~~v~~fSlEm~~~~l~ 239 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALR--EGKPVLFFSLEMSAEQLG 239 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCCHHHHH
Confidence 45556789999999999998886 6 799999999776544443
No 178
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=72.92 E-value=6.8 Score=36.46 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=33.9
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCC-CeEEEEEeCccchhhhhc
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHK-NYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~-Gh~Vt~~~~~~~~~~v~~ 52 (493)
+++...|+.|-..-++.+|..+.. + |+.|.|++.+...+.+..
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~--~~~~~vly~SlEm~~~~l~~ 65 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAAL--NGGYPVLYFSLEMSEEELAA 65 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH--TTSSEEEEEESSS-HHHHHH
T ss_pred EEEEecccCCchHHHHHHHHHHHH--hcCCeEEEEcCCCCHHHHHH
Confidence 455557999999999999999988 6 699999998865554443
No 179
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=72.51 E-value=27 Score=26.31 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCccchhhhhcc
Q 011106 22 FLALALHIEQRHKNYSITFVSTPLNIKKLKSS 53 (493)
Q Consensus 22 ~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~ 53 (493)
++.+++.|.+ .|++| ++| +.....+++.
T Consensus 2 ~~~~~~~l~~--lG~~i-~AT-~gTa~~L~~~ 29 (90)
T smart00851 2 LVELAKRLAE--LGFEL-VAT-GGTAKFLREA 29 (90)
T ss_pred HHHHHHHHHH--CCCEE-EEc-cHHHHHHHHC
Confidence 4689999999 99998 455 3445666663
No 180
>PRK05595 replicative DNA helicase; Provisional
Probab=72.35 E-value=26 Score=35.54 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=32.6
Q ss_pred EEEECCCCcccHHHHHHHHHHHH-hcCCCeEEEEEeCccchhhhh
Q 011106 8 IVMFPFMAQGHIIPFLALALHIE-QRHKNYSITFVSTPLNIKKLK 51 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~-~~~~Gh~Vt~~~~~~~~~~v~ 51 (493)
+++..-|+.|=..-.+.+|..+. + +|+.|.|++.+...+.+.
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~--~g~~vl~fSlEms~~~l~ 246 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALR--EGKSVAIFSLEMSKEQLA 246 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHH--cCCcEEEEecCCCHHHHH
Confidence 34455789999999999998875 5 799999999876544443
No 181
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=72.02 E-value=1e+02 Score=30.22 Aligned_cols=88 Identities=22% Similarity=0.201 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCc-----hhHHHHhccCCCCeEEeeccCh---HHhhccCC
Q 011106 292 SASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLP-----EGFEERIRDSKRGLLMKNWAPQ---LEVLSHRA 363 (493)
Q Consensus 292 ~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~nv~~~~~~pq---~~lL~~~~ 363 (493)
+...+..++++++..+.++...+..+. ...... ..+. .+-.... +.-.+++.+|+|| +.||-.++
T Consensus 193 e~~~l~~ll~~~~~~~~pv~llvp~g~---~~~~~~--~~~~~~~~~~g~~~~~--g~l~l~~lPF~~Q~~yD~LLw~cD 265 (374)
T PF10093_consen 193 ENAALASLLDAWAASPKPVHLLVPEGR---ALNSLA--AWLGDALLQAGDSWQR--GNLTLHVLPFVPQDDYDRLLWACD 265 (374)
T ss_pred CchHHHHHHHHHhcCCCCeEEEecCCc---cHHHHH--HHhccccccCcccccc--CCeEEEECCCCCHHHHHHHHHhCc
Confidence 445577778888877777665554331 000000 0010 0000000 1334677899998 56998888
Q ss_pred cCceeeccCchhHHHHHHhCCcEecc
Q 011106 364 TCAFLSHCGWNSVLEALIHGVPIIGW 389 (493)
Q Consensus 364 v~~~I~HgG~gs~~eal~~GvP~l~~ 389 (493)
+ .||= |-=|...|..+|+|.|=-
T Consensus 266 ~-NfVR--GEDSfVRAqwAgkPFvWh 288 (374)
T PF10093_consen 266 F-NFVR--GEDSFVRAQWAGKPFVWH 288 (374)
T ss_pred c-ceEe--cchHHHHHHHhCCCceEe
Confidence 7 4553 677999999999999844
No 182
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=71.87 E-value=33 Score=26.90 Aligned_cols=84 Identities=13% Similarity=-0.001 Sum_probs=55.4
Q ss_pred ccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCChhhHHHHHHHH
Q 011106 17 GHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLPYNLVIHLLRAS 96 (493)
Q Consensus 17 GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 96 (493)
.+-.-++.+++.|.+ .|+++ ++ ++.....+++ .++....+..+ ..
T Consensus 10 ~~k~~~~~~~~~l~~--~G~~l-~a-T~gT~~~l~~-----~gi~~~~v~~~------~~-------------------- 54 (110)
T cd01424 10 RDKPEAVEIAKRLAE--LGFKL-VA-TEGTAKYLQE-----AGIPVEVVNKV------SE-------------------- 54 (110)
T ss_pred CcHhHHHHHHHHHHH--CCCEE-EE-chHHHHHHHH-----cCCeEEEEeec------CC--------------------
Confidence 355678899999999 99998 34 4556666776 44555444421 10
Q ss_pred hhhhHHHHHHHHHhhcCCCCCcEEEECCc-------chhhHHHHHHcCCceEE
Q 011106 97 TSLKPAFKEVISSLINQGRPPLCIIADIF-------FGWTCGVAKELNVFHAI 142 (493)
Q Consensus 97 ~~~~~~l~~~l~~~~~~~~~pDlvI~D~~-------~~~~~~~A~~lgiP~i~ 142 (493)
..+.+.+.+++-. +|+||...- .......|-.+|||+++
T Consensus 55 --~~~~i~~~i~~~~-----id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 55 --GRPNIVDLIKNGE-----IQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred --CchhHHHHHHcCC-----eEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 1135566666655 999998431 23556789999999985
No 183
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=71.66 E-value=13 Score=37.46 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=27.7
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
|. +++|||++-.+++-| +||++|++ .++-..+++.+
T Consensus 1 ~~-~~~kvLviG~g~reh-----al~~~~~~--~~~~~~~~~~p 36 (426)
T PRK13789 1 MQ-VKLKVLLIGSGGRES-----AIAFALRK--SNLLSELKVFP 36 (426)
T ss_pred CC-CCcEEEEECCCHHHH-----HHHHHHHh--CCCCCEEEEEC
Confidence 66 568999999999988 68999998 77554444444
No 184
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=71.34 E-value=24 Score=31.22 Aligned_cols=40 Identities=8% Similarity=-0.022 Sum_probs=36.0
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLN 46 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~ 46 (493)
+.+|++.+.++-.|-....-++..|.. +|++|+++.....
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~--~G~~vi~LG~~vp 123 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRA--NGFDVIDLGRDVP 123 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHh--CCcEEEECCCCCC
Confidence 469999999999999999999999999 9999999986544
No 185
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=70.96 E-value=40 Score=31.36 Aligned_cols=25 Identities=8% Similarity=-0.025 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEeCccch
Q 011106 20 IPFLALALHIEQRHKNYSITFVSTPLNI 47 (493)
Q Consensus 20 ~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~ 47 (493)
--+..|++.|.+ .| +|+++.+...+
T Consensus 14 pGi~aL~~al~~--~g-~V~VvAP~~eq 38 (266)
T PRK13934 14 PGLRLLYEFVSP--LG-EVDVVAPETPK 38 (266)
T ss_pred HHHHHHHHHHHh--CC-cEEEEccCCCC
Confidence 447789999988 77 79988876543
No 186
>PRK08840 replicative DNA helicase; Provisional
Probab=70.61 E-value=44 Score=34.10 Aligned_cols=43 Identities=12% Similarity=0.127 Sum_probs=33.0
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhh
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLK 51 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~ 51 (493)
+++..-|+.|=..-.+.+|...... .|+.|.|++-+...+.+.
T Consensus 220 iviaarPg~GKTafalnia~~~a~~-~~~~v~~fSlEMs~~ql~ 262 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMD-QDKPVLIFSLEMPAEQLM 262 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHh-CCCeEEEEeccCCHHHHH
Confidence 4445578999999999999988631 699999999876554443
No 187
>PRK06321 replicative DNA helicase; Provisional
Probab=70.49 E-value=48 Score=33.95 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=32.7
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhh
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLK 51 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~ 51 (493)
+++..-|+.|=..-.+.+|...... .|..|.|++-+.....+.
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~-~g~~v~~fSLEMs~~ql~ 271 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQ-NRLPVGIFSLEMTVDQLI 271 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHHH
Confidence 4555579999999999999988631 689999998776544443
No 188
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=70.17 E-value=80 Score=28.15 Aligned_cols=150 Identities=15% Similarity=0.195 Sum_probs=79.6
Q ss_pred CcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHH
Q 011106 278 NSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLE 357 (493)
Q Consensus 278 ~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~ 357 (493)
++++.|+.|... ..-+..|...+..+.++.... .+.+..-.. ..++.+..--.+..
T Consensus 10 k~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~---------------~~~l~~l~~--~~~i~~~~~~~~~~ 65 (205)
T TIGR01470 10 RAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEEL---------------ESELTLLAE--QGGITWLARCFDAD 65 (205)
T ss_pred CeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCC---------------CHHHHHHHH--cCCEEEEeCCCCHH
Confidence 458888777554 223455666788876654321 111111111 23454433223344
Q ss_pred hhccCCcCceeeccCchhHHH-----HHHhCCcEec--ccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHH
Q 011106 358 VLSHRATCAFLSHCGWNSVLE-----ALIHGVPIIG--WPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIE 430 (493)
Q Consensus 358 lL~~~~v~~~I~HgG~gs~~e-----al~~GvP~l~--~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~ 430 (493)
.|..+.+ +|..-|...+.+ |-..|+|+-+ -|-..| +..-..+.+- ++-+.+..+.....-...|++.|.
T Consensus 66 dl~~~~l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g-~l~iaisT~G~sP~la~~lr~~ie 141 (205)
T TIGR01470 66 ILEGAFL--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRS-PVVVAISSGGAAPVLARLLRERIE 141 (205)
T ss_pred HhCCcEE--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcC-CEEEEEECCCCCcHHHHHHHHHHH
Confidence 5666665 777777664444 3446788733 333333 2233334433 455555543223344577888888
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHHHhh
Q 011106 431 LVMNETDKGKEIRRKVSEVREMIKNAM 457 (493)
Q Consensus 431 ~~l~~~~~~~~~~~~a~~l~~~~~~~~ 457 (493)
+++.+. . ..+-+...++++.+++..
T Consensus 142 ~~l~~~-~-~~~~~~~~~~R~~~k~~~ 166 (205)
T TIGR01470 142 TLLPPS-L-GDLATLAATWRDAVKKRL 166 (205)
T ss_pred Hhcchh-H-HHHHHHHHHHHHHHHhhC
Confidence 888644 2 356677777777776443
No 189
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=69.26 E-value=9.9 Score=33.56 Aligned_cols=49 Identities=6% Similarity=-0.130 Sum_probs=36.0
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhh
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLK 51 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~ 51 (493)
|....+||++--.|+.|=+.-...|++.|.+ +||+|.++.++...+.+.
T Consensus 1 ~~l~~k~IllgVTGsiaa~k~a~~lir~L~k--~G~~V~vv~T~aA~~~~~ 49 (196)
T PRK08305 1 MSLKGKRIGFGLTGSHCTYDEVMPEIEKLVD--EGAEVTPIVSYTVQTTDT 49 (196)
T ss_pred CCCCCCEEEEEEcCHHHHHHHHHHHHHHHHh--CcCEEEEEECHhHHHHhh
Confidence 3334567877766655544447999999999 999999999887665543
No 190
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=68.90 E-value=27 Score=32.96 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=34.7
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccc
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLN 46 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~ 46 (493)
+..+|-+.-.|+-|--.-.-.|.+.|.+ +||+|-++.-.+.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~--~G~rVaVlAVDPS 90 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRE--RGHRVAVLAVDPS 90 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHH--CCcEEEEEEECCC
Confidence 3457777779999999999999999999 9999999976543
No 191
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=68.79 E-value=1.2e+02 Score=31.25 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=71.0
Q ss_pred eEEeeccChHH---hhccCCcCceee--ccCchhHH-HHHHhCC----cEecccccccchhhHHHHhhhhceeEEeecCC
Q 011106 347 LLMKNWAPQLE---VLSHRATCAFLS--HCGWNSVL-EALIHGV----PIIGWPMAAEQFFNAKFLEQEMGVCVEVARGK 416 (493)
Q Consensus 347 v~~~~~~pq~~---lL~~~~v~~~I~--HgG~gs~~-eal~~Gv----P~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 416 (493)
+.+...+|+.+ +++.++| ++|| .-|+|-+. |.++++. |+|+=-+.+ |. +.|.-++.+.+
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa---~~l~~AllVNP-- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA---VELKGALLTNP-- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch---hhcCCCEEECC--
Confidence 45667788765 5566787 4555 35898655 9999877 444433322 11 23355778876
Q ss_pred CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHhh
Q 011106 417 TCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAISM 481 (493)
Q Consensus 417 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 481 (493)
.+.++++++|.++|+.+ .. +-++|.+++.+.++.. ....=++.++..|+..
T Consensus 433 ---~d~~~~A~ai~~AL~m~-~~-Er~~R~~~l~~~v~~~---------d~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 433 ---YDPVRMDETIYVALAMP-KA-EQQARMREMFDAVNYY---------DVQRWADEFLAAVSPQ 483 (487)
T ss_pred ---CCHHHHHHHHHHHHcCC-HH-HHHHHHHHHHHHHhhC---------CHHHHHHHHHHHhhhc
Confidence 79999999999999988 22 3355555555555422 1456677777776543
No 192
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=68.23 E-value=47 Score=30.68 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCccchhh
Q 011106 22 FLALALHIEQRHKNYSITFVSTPLNIKK 49 (493)
Q Consensus 22 ~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~ 49 (493)
+..|++.|.+ . |+|+++.+...+.-
T Consensus 16 i~aL~~~l~~--~-~~V~VvAP~~~qSg 40 (250)
T PRK00346 16 IRALAEALRE--L-ADVTVVAPDRERSG 40 (250)
T ss_pred HHHHHHHHHh--C-CCEEEEeCCCCCcC
Confidence 6788999998 7 79999987654333
No 193
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=67.63 E-value=51 Score=30.50 Aligned_cols=30 Identities=10% Similarity=0.000 Sum_probs=22.0
Q ss_pred CCcEEEEC----------Ccc---hhhHHHHHHcCCceEEEec
Q 011106 116 PPLCIIAD----------IFF---GWTCGVAKELNVFHAIFSG 145 (493)
Q Consensus 116 ~pDlvI~D----------~~~---~~~~~~A~~lgiP~i~~~~ 145 (493)
+||+||+- .+. ..++.-|..+|||.+.+|.
T Consensus 86 ~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 128 (253)
T PRK13935 86 KVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISS 128 (253)
T ss_pred CCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEc
Confidence 39999964 222 3556677888999999985
No 194
>PRK09165 replicative DNA helicase; Provisional
Probab=67.61 E-value=42 Score=34.63 Aligned_cols=45 Identities=13% Similarity=0.171 Sum_probs=33.1
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcC-------------CCeEEEEEeCccchhhhhc
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRH-------------KNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~-------------~Gh~Vt~~~~~~~~~~v~~ 52 (493)
+++..-|+.|=..-.+.+|....... .|..|.|++-+...+.+..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 45556789999999999998876510 2789999998766555443
No 195
>PRK06849 hypothetical protein; Provisional
Probab=66.89 E-value=24 Score=35.06 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=28.2
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
.+++|+++...+ .-.+++|+.|.+ +||+|.++....
T Consensus 3 ~~~~VLI~G~~~----~~~l~iar~l~~--~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARA----PAALELARLFHN--AGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCc----HHHHHHHHHHHH--CCCEEEEEeCCc
Confidence 567888875322 358999999999 999999997654
No 196
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=66.65 E-value=1.1e+02 Score=28.52 Aligned_cols=80 Identities=18% Similarity=0.296 Sum_probs=52.1
Q ss_pred CCeEEeeccCh---HHhhccCCcCceeec---cCchh-HHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCC
Q 011106 345 RGLLMKNWAPQ---LEVLSHRATCAFLSH---CGWNS-VLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKT 417 (493)
Q Consensus 345 ~nv~~~~~~pq---~~lL~~~~v~~~I~H---gG~gs-~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~ 417 (493)
.++....++++ ..+++.+++ ++.- .|.|. +.||+++|+|+|.... ......+... +.|. +..
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~~~~-~~g~-~~~--- 325 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVVEDG-ETGL-LVP--- 325 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHhcCC-CceE-ecC---
Confidence 66777888882 446666665 5544 35544 5999999999976643 3333333322 2366 332
Q ss_pred CccCHHHHHHHHHHHhcCC
Q 011106 418 CEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 418 ~~~~~~~l~~ai~~~l~~~ 436 (493)
. .+.+++..++..++++.
T Consensus 326 ~-~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 326 P-GDVEELADALEQLLEDP 343 (381)
T ss_pred C-CCHHHHHHHHHHHhcCH
Confidence 1 27899999999999877
No 197
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=66.26 E-value=42 Score=26.53 Aligned_cols=85 Identities=11% Similarity=0.028 Sum_probs=52.8
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHh
Q 011106 18 HIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLPYNLVIHLLRAST 97 (493)
Q Consensus 18 H~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (493)
+=.-++.+|+.|.+ .||++ ++| +.....+++ .++....+... +.+
T Consensus 10 ~K~~~~~~a~~l~~--~G~~i-~AT-~gTa~~L~~-----~Gi~~~~v~~~------~~~-------------------- 54 (112)
T cd00532 10 VKAMLVDLAPKLSS--DGFPL-FAT-GGTSRVLAD-----AGIPVRAVSKR------HED-------------------- 54 (112)
T ss_pred cHHHHHHHHHHHHH--CCCEE-EEC-cHHHHHHHH-----cCCceEEEEec------CCC--------------------
Confidence 34558899999999 99998 344 455666676 34454444321 110
Q ss_pred hhhHHHHHHHHH-hhcCCCCCcEEEECC--c--------chhhHHHHHHcCCceEEE
Q 011106 98 SLKPAFKEVISS-LINQGRPPLCIIADI--F--------FGWTCGVAKELNVFHAIF 143 (493)
Q Consensus 98 ~~~~~l~~~l~~-~~~~~~~pDlvI~D~--~--------~~~~~~~A~~lgiP~i~~ 143 (493)
..+.+.+.+.+ -+ +|+||.-. . ......+|-.++||+++-
T Consensus 55 -g~~~i~~~i~~~g~-----idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 55 -GEPTVDAAIAEKGK-----FDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred -CCcHHHHHHhCCCC-----EEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 11355566666 55 99998732 2 123346789999999873
No 198
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=65.54 E-value=44 Score=31.07 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=22.0
Q ss_pred CCcEEEEC----------Ccc---hhhHHHHHHcCCceEEEec
Q 011106 116 PPLCIIAD----------IFF---GWTCGVAKELNVFHAIFSG 145 (493)
Q Consensus 116 ~pDlvI~D----------~~~---~~~~~~A~~lgiP~i~~~~ 145 (493)
+||+||+- .+. ..++.-|..+|||.+.+|.
T Consensus 87 ~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 87 PPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred CCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 49999974 222 3555677889999999975
No 199
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=65.24 E-value=87 Score=26.72 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=21.9
Q ss_pred cCceeeccCch------hHHHHHHhCCcEeccc
Q 011106 364 TCAFLSHCGWN------SVLEALIHGVPIIGWP 390 (493)
Q Consensus 364 v~~~I~HgG~g------s~~eal~~GvP~l~~P 390 (493)
..++++|+|-| .+.+|...++|||++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 44578888754 7789999999999996
No 200
>PRK08760 replicative DNA helicase; Provisional
Probab=65.18 E-value=46 Score=34.11 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=32.3
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhh
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKL 50 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v 50 (493)
+++..-|+.|=..-.+.+|...... .|+.|.|++-+.....+
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~-~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIK-SKKGVAVFSMEMSASQL 273 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHh-cCCceEEEeccCCHHHH
Confidence 4555678999999999999887641 59999999887654433
No 201
>PRK06904 replicative DNA helicase; Validated
Probab=65.16 E-value=63 Score=33.08 Aligned_cols=43 Identities=9% Similarity=0.087 Sum_probs=33.0
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhh
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLK 51 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~ 51 (493)
+++..-|+.|=..-.+.+|...+.. .|+.|.|++.+...+.+.
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~-~g~~Vl~fSlEMs~~ql~ 266 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMA-SEKPVLVFSLEMPAEQIM 266 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHHH
Confidence 4455579999999999999887641 599999999876554444
No 202
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=64.98 E-value=19 Score=30.91 Aligned_cols=44 Identities=14% Similarity=0.038 Sum_probs=29.1
Q ss_pred hhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhH-H----HHHHc-CCceEEEec
Q 011106 97 TSLKPAFKEVISSLINQGRPPLCIIADIFFGWTC-G----VAKEL-NVFHAIFSG 145 (493)
Q Consensus 97 ~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~-~----~A~~l-giP~i~~~~ 145 (493)
....+.+.++|++.+ ||+||+...+.... . ....+ ++|++++.|
T Consensus 75 ~~~~~~l~~~l~~~~-----PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 75 RLFARRLIRLLREFQ-----PDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHHhhcC-----CCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 345567888898888 99999997654333 1 12224 578777654
No 203
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=64.43 E-value=40 Score=31.98 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=37.9
Q ss_pred CceeeccCchhHHHHHHh----CCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 365 CAFLSHCGWNSVLEALIH----GVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 365 ~~~I~HgG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
+++|+-||=||+++++.. ++|++.+-+ - + +|.- ...+.+++.+++.+++..+
T Consensus 65 d~vi~~GGDGt~l~~~~~~~~~~~pilGIn~-----------G-~--lGFL------~~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 65 DLAVVLGGDGTMLGIGRQLAPYGVPLIGINH-----------G-R--LGFI------TDIPLDDMQETLPPMLAGN 120 (291)
T ss_pred CEEEEECCcHHHHHHHHHhcCCCCCEEEEcC-----------C-C--cccc------ccCCHHHHHHHHHHHHcCC
Confidence 359999999999999874 678777731 0 1 2322 3467799999999998766
No 204
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=64.26 E-value=77 Score=26.99 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=20.6
Q ss_pred cCceeeccCch------hHHHHHHhCCcEeccc
Q 011106 364 TCAFLSHCGWN------SVLEALIHGVPIIGWP 390 (493)
Q Consensus 364 v~~~I~HgG~g------s~~eal~~GvP~l~~P 390 (493)
..++++|+|-| .+.+|...++|||++.
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 34467776644 6778999999999996
No 205
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=62.28 E-value=50 Score=25.58 Aligned_cols=88 Identities=7% Similarity=-0.068 Sum_probs=51.1
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCC
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLP 85 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~ 85 (493)
|||+++-.+++-| +||..|.+..+..+|.++-...-...+. +.+.+.
T Consensus 1 MkVLviGsGgREH-----Aia~~l~~s~~v~~v~~aPGN~G~~~~~---------~~~~~~------------------- 47 (100)
T PF02844_consen 1 MKVLVIGSGGREH-----AIAWKLSQSPSVEEVYVAPGNPGTAELG---------KNVPID------------------- 47 (100)
T ss_dssp EEEEEEESSHHHH-----HHHHHHTTCTTEEEEEEEE--TTGGGTS---------EEE-S--------------------
T ss_pred CEEEEECCCHHHH-----HHHHHHhcCCCCCEEEEeCCCHHHHhhc---------eecCCC-------------------
Confidence 6899999999999 6899998743334444443211111111 111111
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcch---hhHHHHHHcCCceEE
Q 011106 86 YNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFG---WTCGVAKELNVFHAI 142 (493)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~---~~~~~A~~lgiP~i~ 142 (493)
..-...+.++.++.. +|+||..+-.+ ...+..+..|||++.
T Consensus 48 -----------~~d~~~l~~~a~~~~-----idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 48 -----------ITDPEELADFAKENK-----IDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp -----------TT-HHHHHHHHHHTT-----ESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred -----------CCCHHHHHHHHHHcC-----CCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 011246666777777 99999985544 445777888998764
No 206
>PRK07004 replicative DNA helicase; Provisional
Probab=61.95 E-value=73 Score=32.55 Aligned_cols=43 Identities=9% Similarity=0.061 Sum_probs=32.9
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhh
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLK 51 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~ 51 (493)
+++..-|+.|=..-.+.+|..+... .|+.|.|++-+...+.+.
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~-~~~~v~~fSlEM~~~ql~ 258 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVE-YGLPVAVFSMEMPGTQLA 258 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHH-cCCeEEEEeCCCCHHHHH
Confidence 4455578999999999999887531 699999999876554443
No 207
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=61.64 E-value=21 Score=33.12 Aligned_cols=37 Identities=19% Similarity=0.087 Sum_probs=31.2
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccc
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLN 46 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~ 46 (493)
+++..-|+.|-..-...+|..+.+ .|++|.++.....
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~--~g~~vLlvd~D~~ 39 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAE--QGKKVLLVSTDPA 39 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHH--CCCCceEEeCCCc
Confidence 344446899999999999999999 9999999987654
No 208
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=61.59 E-value=95 Score=30.09 Aligned_cols=83 Identities=18% Similarity=0.160 Sum_probs=62.8
Q ss_pred CCCeEE-eeccCh---HHhhccCCcCceeec--cCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCC
Q 011106 344 KRGLLM-KNWAPQ---LEVLSHRATCAFLSH--CGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKT 417 (493)
Q Consensus 344 ~~nv~~-~~~~pq---~~lL~~~~v~~~I~H--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~ 417 (493)
.+++.+ .+++|. .++|+.++++-|++. =|.|++.-.|+.|+|+++- .+-+.+-...+ . |+-+-...
T Consensus 244 ~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l~~-~-~ipVlf~~--- 315 (360)
T PF07429_consen 244 AENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDLKE-Q-GIPVLFYG--- 315 (360)
T ss_pred ccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHHHh-C-CCeEEecc---
Confidence 356654 467774 679999999666654 5899999999999999875 45555555444 6 78777665
Q ss_pred CccCHHHHHHHHHHHhc
Q 011106 418 CEVKHEDVVAKIELVMN 434 (493)
Q Consensus 418 ~~~~~~~l~~ai~~~l~ 434 (493)
..++...|+++=+++..
T Consensus 316 d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 316 DELDEALVREAQRQLAN 332 (360)
T ss_pred ccCCHHHHHHHHHHHhh
Confidence 78999999999887774
No 209
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=60.98 E-value=60 Score=25.74 Aligned_cols=87 Identities=15% Similarity=0.085 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHh
Q 011106 18 HIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLPYNLVIHLLRAST 97 (493)
Q Consensus 18 H~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (493)
+-.-++.+|+.|.+ .|++|. . ++...+.+.+. ++....+... ...+. .+
T Consensus 11 dk~~~~~~a~~l~~--~G~~i~-a-T~gTa~~L~~~-----gi~~~~v~~~---~~~~~-----~~-------------- 59 (116)
T cd01423 11 SKPELLPTAQKLSK--LGYKLY-A-TEGTADFLLEN-----GIPVTPVAWP---SEEPQ-----ND-------------- 59 (116)
T ss_pred cchhHHHHHHHHHH--CCCEEE-E-ccHHHHHHHHc-----CCCceEeeec---cCCCC-----CC--------------
Confidence 44568899999999 999883 4 45555666663 3333333210 00000 00
Q ss_pred hhhHHHHHHHHHhhcCCCCCcEEEECCc---------chhhHHHHHHcCCceEE
Q 011106 98 SLKPAFKEVISSLINQGRPPLCIIADIF---------FGWTCGVAKELNVFHAI 142 (493)
Q Consensus 98 ~~~~~l~~~l~~~~~~~~~pDlvI~D~~---------~~~~~~~A~~lgiP~i~ 142 (493)
.+.+.+++++-. +|+||.-.- .......|-.+|||+++
T Consensus 60 --~~~i~~~i~~~~-----idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 60 --KPSLRELLAEGK-----IDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred --chhHHHHHHcCC-----ceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 145666667655 999998532 23455789999999974
No 210
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=60.62 E-value=22 Score=26.17 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=31.5
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFV 41 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~ 41 (493)
++-++++..+...|...+-.+|+.|.+ +|+.|..+
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~--~G~~V~~~ 49 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAE--QGYAVFAY 49 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHh--CCCEEEEE
Confidence 367888899999999999999999999 99998766
No 211
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=60.25 E-value=46 Score=29.92 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=36.0
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
.+.||++.+.++-.|-....-++..|.. +|++|+++....
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~--~G~~Vi~LG~~v 126 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSN--NGYEVIDLGVMV 126 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHh--CCCEEEECCCCC
Confidence 3569999999999999999999999999 999999998644
No 212
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=59.91 E-value=29 Score=29.57 Aligned_cols=99 Identities=15% Similarity=0.024 Sum_probs=55.2
Q ss_pred cccHHH----HHHHHHHHHhcCCCeEEEEEeCcc---chhh----hhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCC
Q 011106 16 QGHIIP----FLALALHIEQRHKNYSITFVSTPL---NIKK----LKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVL 84 (493)
Q Consensus 16 ~GH~~p----~l~LA~~L~~~~~Gh~Vt~~~~~~---~~~~----v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~ 84 (493)
.|.++| .+..|+.|.+. .|.+|+.++-.. ..+. +...|. + +.+.+..+ .+.. +
T Consensus 10 ~~~l~~~~~e~l~~A~~La~~-~g~~v~av~~G~~~~~~~~l~~~l~~~G~--d--~v~~~~~~----~~~~-~------ 73 (164)
T PF01012_consen 10 DGRLNPVSLEALEAARRLAEA-LGGEVTAVVLGPAEEAAEALRKALAKYGA--D--KVYHIDDP----ALAE-Y------ 73 (164)
T ss_dssp TCEE-HHHHHHHHHHHHHHHC-TTSEEEEEEEETCCCHHHHHHHHHHSTTE--S--EEEEEE-G----GGTT-C------
T ss_pred CCccCHHHHHHHHHHHHHHhh-cCCeEEEEEEecchhhHHHHhhhhhhcCC--c--EEEEecCc----cccc-c------
Confidence 444554 67899999875 477877776442 2333 222333 2 23333311 1100 0
Q ss_pred ChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcch---hhHHHHHHcCCceEEEec
Q 011106 85 PYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFG---WTCGVAKELNVFHAIFSG 145 (493)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~---~~~~~A~~lgiP~i~~~~ 145 (493)
..+.+...+.+++++.. ||+|+.-.-.. .+..+|..+|.|++.-.+
T Consensus 74 ----------~~~~~a~~l~~~~~~~~-----~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 74 ----------DPEAYADALAELIKEEG-----PDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp -----------HHHHHHHHHHHHHHHT------SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred ----------CHHHHHHHHHHHHHhcC-----CCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 11234456777788877 99999875433 556799999999998543
No 213
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=59.77 E-value=43 Score=29.12 Aligned_cols=42 Identities=14% Similarity=-0.051 Sum_probs=26.3
Q ss_pred hHHHHHHHHHhhcCCCCCcEEEECCcch-hhHHHHHHcCCceEEEech
Q 011106 100 KPAFKEVISSLINQGRPPLCIIADIFFG-WTCGVAKELNVFHAIFSGS 146 (493)
Q Consensus 100 ~~~l~~~l~~~~~~~~~pDlvI~D~~~~-~~~~~A~~lgiP~i~~~~~ 146 (493)
.+++.+.+++.. ||++|+-.+.. -...+-......++-+.++
T Consensus 68 ~~~~~~~l~~~~-----~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 68 DEELLELLESLN-----PDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp HHHHHHHHHHTT------SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred hhHHHHHHHhhc-----cceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 356777888888 99998876543 3334556666677777654
No 214
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=59.56 E-value=34 Score=37.30 Aligned_cols=113 Identities=19% Similarity=0.129 Sum_probs=64.2
Q ss_pred EEeeccChHH---hhccCCcCceeec---cCch-hHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCcc
Q 011106 348 LMKNWAPQLE---VLSHRATCAFLSH---CGWN-SVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEV 420 (493)
Q Consensus 348 ~~~~~~pq~~---lL~~~~v~~~I~H---gG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~ 420 (493)
++..++++.+ +++.+++ |+.- -|+| .+.|++++|+|-..+|...+--.-+..+ .-|+.+++ -
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv~P-----~ 413 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLVNP-----N 413 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEECC-----C
Confidence 3446778754 5666776 4432 3555 6779999977521122111111111111 23667765 6
Q ss_pred CHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHhhc
Q 011106 421 KHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAISMK 482 (493)
Q Consensus 421 ~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 482 (493)
+.++++++|.++|.++.. +.+++.+++++.++ .-+...-++.+++.+++..
T Consensus 414 d~~~la~ai~~~l~~~~~--e~~~r~~~~~~~v~---------~~~~~~w~~~~l~~l~~~~ 464 (726)
T PRK14501 414 DIEGIAAAIKRALEMPEE--EQRERMQAMQERLR---------RYDVHKWASDFLDELREAA 464 (726)
T ss_pred CHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHH---------hCCHHHHHHHHHHHHHHHH
Confidence 899999999999987611 33444444444443 1235566777777766653
No 215
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=59.49 E-value=10 Score=29.02 Aligned_cols=85 Identities=19% Similarity=0.098 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHhhhhH
Q 011106 22 FLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLPYNLVIHLLRASTSLKP 101 (493)
Q Consensus 22 ~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (493)
++.+|+.|.+ .||++ ++++.....+++. ++....+-.. -+.++ .+. ...
T Consensus 2 ~~~~a~~l~~--lG~~i--~AT~gTa~~L~~~-----Gi~~~~v~~~---~~~~~-------~~~------------g~~ 50 (95)
T PF02142_consen 2 IVPLAKRLAE--LGFEI--YATEGTAKFLKEH-----GIEVTEVVNK---IGEGE-------SPD------------GRV 50 (95)
T ss_dssp HHHHHHHHHH--TTSEE--EEEHHHHHHHHHT-----T--EEECCEE---HSTG--------GGT------------HCH
T ss_pred HHHHHHHHHH--CCCEE--EEChHHHHHHHHc-----CCCceeeeee---cccCc-------cCC------------chh
Confidence 5789999999 99664 4556666777774 4443333210 00000 000 001
Q ss_pred HHHHHHHHhhcCCCCCcEEEECCcch---------hhHHHHHHcCCceEE
Q 011106 102 AFKEVISSLINQGRPPLCIIADIFFG---------WTCGVAKELNVFHAI 142 (493)
Q Consensus 102 ~l~~~l~~~~~~~~~pDlvI~D~~~~---------~~~~~A~~lgiP~i~ 142 (493)
.+.+.+++-+ +|+||...... .-..+|..++||+++
T Consensus 51 ~i~~~i~~~~-----IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 51 QIMDLIKNGK-----IDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLFT 95 (95)
T ss_dssp HHHHHHHTTS-----EEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEEC
T ss_pred HHHHHHHcCC-----eEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCcC
Confidence 4566666666 99999875432 224688899999863
No 216
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=59.46 E-value=19 Score=31.17 Aligned_cols=70 Identities=17% Similarity=0.298 Sum_probs=45.0
Q ss_pred cCCcCceeeccCchhHHHHHHhCCcEecccccc-----------------------cchhhHHHHhhhhceeEEeecCCC
Q 011106 361 HRATCAFLSHCGWNSVLEALIHGVPIIGWPMAA-----------------------EQFFNAKFLEQEMGVCVEVARGKT 417 (493)
Q Consensus 361 ~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~-----------------------DQ~~na~~v~~~lG~G~~~~~~~~ 417 (493)
+..++.+|++||......... ++|+|-+|... ....+...+++.||+-+..-.
T Consensus 32 ~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~--- 107 (176)
T PF06506_consen 32 SEGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYP--- 107 (176)
T ss_dssp TTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEE---
T ss_pred hcCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEE---
Confidence 345556999999998888877 99999999742 233456677767676666554
Q ss_pred CccCHHHHHHHHHHHhcC
Q 011106 418 CEVKHEDVVAKIELVMNE 435 (493)
Q Consensus 418 ~~~~~~~l~~ai~~~l~~ 435 (493)
--+.+++...|.++..+
T Consensus 108 -~~~~~e~~~~i~~~~~~ 124 (176)
T PF06506_consen 108 -YDSEEEIEAAIKQAKAE 124 (176)
T ss_dssp -ESSHHHHHHHHHHHHHT
T ss_pred -ECCHHHHHHHHHHHHHc
Confidence 35678888888877654
No 217
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=58.86 E-value=23 Score=28.17 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=33.2
Q ss_pred EEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
|+++.+.+...|-.-+.-||..|.+ +||+|.++-...
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~--~G~~v~~~d~~~ 38 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRK--AGHEVDILDANV 38 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHH--TTBEEEEEESSB
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHH--CCCeEEEECCCC
Confidence 7889999999999999999999999 999999985443
No 218
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.71 E-value=18 Score=33.71 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=38.6
Q ss_pred cCceeeccCchhHHHHHH------hCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 364 TCAFLSHCGWNSVLEALI------HGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 364 v~~~I~HgG~gs~~eal~------~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
.+++|+-||=||++.+++ .++|++.+-.. .+|.- ...+++++.+++.++++++
T Consensus 36 ~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGFL------~~~~~~~~~~~l~~i~~g~ 94 (265)
T PRK04885 36 PDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGFY------TDWRPFEVDKLVIALAKDP 94 (265)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------------Cceec------ccCCHHHHHHHHHHHHcCC
Confidence 345999999999999986 47888887421 12222 3457788899999988765
No 219
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=58.52 E-value=26 Score=34.62 Aligned_cols=42 Identities=17% Similarity=0.250 Sum_probs=34.7
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
|++---|+.|--.=+++++..|.+ +| .|.+++.+.....++-
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~--~~-~vLYVsGEES~~Qikl 137 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAK--RG-KVLYVSGEESLQQIKL 137 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHh--cC-cEEEEeCCcCHHHHHH
Confidence 444456899999999999999999 89 9999999876666543
No 220
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=58.08 E-value=21 Score=35.16 Aligned_cols=115 Identities=13% Similarity=0.243 Sum_probs=65.3
Q ss_pred CCCeEEee-ccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecC--CCCcc
Q 011106 344 KRGLLMKN-WAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARG--KTCEV 420 (493)
Q Consensus 344 ~~nv~~~~-~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~--~~~~~ 420 (493)
..++...+ ..+-.++|..+++ +||-- .+.+.|.+..++|+|....-.|.+... + |.-...... ...--
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~-----r-g~~~~~~~~~pg~~~~ 321 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKE-----R-GFYFDYEEDLPGPIVY 321 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT-----S-SBSS-TTTSSSS-EES
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhc-----c-CCCCchHhhCCCceeC
Confidence 45665543 4456899999887 99976 447789999999999887766665322 1 333222110 01234
Q ss_pred CHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHH
Q 011106 421 KHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFL 475 (493)
Q Consensus 421 ~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~ 475 (493)
+.++|.++|..+++++ ..++++-++..+.+-. . .+|.++++.++.|+
T Consensus 322 ~~~eL~~~i~~~~~~~---~~~~~~~~~~~~~~~~-~----~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 322 NFEELIEAIENIIENP---DEYKEKREKFRDKFFK-Y----NDGNSSERIVNYIF 368 (369)
T ss_dssp SHHHHHHHHTTHHHHH---HHTHHHHHHHHHHHST-T------S-HHHHHHHHHH
T ss_pred CHHHHHHHHHhhhhCC---HHHHHHHHHHHHHhCC-C----CCchHHHHHHHHHh
Confidence 7899999999988765 1355566666666642 2 45555555555554
No 221
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=56.13 E-value=6.4 Score=34.52 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=28.6
Q ss_pred CcEEEEECCCCcccHHH------------HHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 5 KENIVMFPFMAQGHIIP------------FLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p------------~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
.+||++...|+.=++.| -..||+.+.. +|++|++++.+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~--~Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAAR--RGAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHH--TT-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHH--CCCEEEEEecCc
Confidence 46788887777777766 3589999999 999999999873
No 222
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=56.10 E-value=94 Score=28.24 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=32.9
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCC-CeEEEEEeCccchhhhh
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHK-NYSITFVSTPLNIKKLK 51 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~-Gh~Vt~~~~~~~~~~v~ 51 (493)
+++...|+.|=..-+++++..+.. + |+.|.|++.+.....+.
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~--~~g~~vly~s~E~~~~~~~ 58 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAK--KQGKPVLFFSLEMSKEQLL 58 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH--hCCCceEEEeCCCCHHHHH
Confidence 445557899999999999988887 6 99999999876544333
No 223
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=55.78 E-value=21 Score=28.68 Aligned_cols=38 Identities=11% Similarity=0.016 Sum_probs=23.9
Q ss_pred cEEEEECCCCcc---cHHHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 6 ENIVMFPFMAQG---HIIPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 6 ~~il~~~~~~~G---H~~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
+||+|+.-|-.+ .-.-.++|+.+-.+ |||+|.++....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~--RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQR--RGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHH--TT-EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHH--CCCEEEEEEcCc
Confidence 356666654333 23457888888889 999999998664
No 224
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=55.77 E-value=27 Score=33.48 Aligned_cols=44 Identities=11% Similarity=0.176 Sum_probs=34.3
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
|.++++||+++-.++.|= .+|..|.+ .||+|+++.-.. .+.+..
T Consensus 1 ~~~~~m~I~IiG~GaiG~-----~lA~~L~~--~g~~V~~~~r~~-~~~~~~ 44 (313)
T PRK06249 1 MDSETPRIGIIGTGAIGG-----FYGAMLAR--AGFDVHFLLRSD-YEAVRE 44 (313)
T ss_pred CCCcCcEEEEECCCHHHH-----HHHHHHHH--CCCeEEEEEeCC-HHHHHh
Confidence 677788999998888884 57788999 999999998654 344444
No 225
>PRK05636 replicative DNA helicase; Provisional
Probab=55.37 E-value=91 Score=32.25 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=32.0
Q ss_pred EEEECCCCcccHHHHHHHHHHHH-hcCCCeEEEEEeCccchhhhh
Q 011106 8 IVMFPFMAQGHIIPFLALALHIE-QRHKNYSITFVSTPLNIKKLK 51 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~-~~~~Gh~Vt~~~~~~~~~~v~ 51 (493)
+++..-|+.|=..-.+.+|.... + .|..|.|++.+.....+.
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~--~g~~v~~fSlEMs~~ql~ 310 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIK--HNKASVIFSLEMSKSEIV 310 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEEeeCCHHHHH
Confidence 45556789999999999998875 4 688999998776544443
No 226
>PRK05748 replicative DNA helicase; Provisional
Probab=54.67 E-value=1.2e+02 Score=30.91 Aligned_cols=43 Identities=14% Similarity=0.211 Sum_probs=33.3
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhh
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLK 51 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~ 51 (493)
+++..-|+.|=..-.+.+|...... .|+.|.|++.+...+.+.
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~~-~g~~v~~fSlEms~~~l~ 248 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVATK-TDKNVAIFSLEMGAESLV 248 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHh-CCCeEEEEeCCCCHHHHH
Confidence 5556678999999999999887631 699999999876555443
No 227
>PRK05920 aromatic acid decarboxylase; Validated
Probab=54.43 E-value=23 Score=31.61 Aligned_cols=46 Identities=22% Similarity=0.175 Sum_probs=36.3
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
+.+||++--.++.+= .=.+.+.+.|++ .||+|.++.+......+..
T Consensus 2 ~~krIllgITGsiaa-~ka~~lvr~L~~--~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 2 KMKRIVLAITGASGA-IYGVRLLECLLA--ADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHH--CCCEEEEEEChhHHHHHHH
Confidence 447777776665544 689999999999 9999999999887776654
No 228
>PRK06749 replicative DNA helicase; Provisional
Probab=53.40 E-value=73 Score=32.16 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=34.2
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhh
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLK 51 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~ 51 (493)
+++..-|+.|=..-.+.+|..... +|+.|.|++-+...+.+.
T Consensus 189 iiIaarPgmGKTafal~ia~~~a~--~g~~v~~fSlEMs~~ql~ 230 (428)
T PRK06749 189 VVLGARPSMGKTAFALNVGLHAAK--SGAAVGLFSLEMSSKQLL 230 (428)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHh--cCCCEEEEEeeCCHHHHH
Confidence 455557999999999999999998 899999998876554444
No 229
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.15 E-value=26 Score=33.20 Aligned_cols=52 Identities=6% Similarity=0.078 Sum_probs=37.6
Q ss_pred CceeeccCchhHHHHHHh----CCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 365 CAFLSHCGWNSVLEALIH----GVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 365 ~~~I~HgG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
+++|+-||=||++.+++. ++|++.+-.. .+|. + ...+.+++.+++++++.++
T Consensus 66 Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGF-L-----t~~~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 66 DFLISLGGDGTLISLCRKAAEYDKFVLGIHAG--------------HLGF-L-----TDITVDEAEKFFQAFFQGE 121 (287)
T ss_pred CEEEEECCCHHHHHHHHHhcCCCCcEEEEeCC--------------Cccc-C-----CcCCHHHHHHHHHHHHcCC
Confidence 359999999999988664 7788877321 1222 1 3467899999999998765
No 230
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=52.96 E-value=1.1e+02 Score=30.99 Aligned_cols=43 Identities=16% Similarity=0.232 Sum_probs=33.0
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhh
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLK 51 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~ 51 (493)
+++...|+.|=..-.+.+|..+... .|+.|.|++.+.....+.
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~-~g~~vl~~SlEm~~~~i~ 240 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIK-EGKPVAFFSLEMSAEQLA 240 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHh-CCCeEEEEeCcCCHHHHH
Confidence 4555578999999999999887641 599999999876555543
No 231
>PRK12342 hypothetical protein; Provisional
Probab=52.25 E-value=25 Score=32.50 Aligned_cols=41 Identities=10% Similarity=-0.147 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhcCCCCCcEEEECCcch------hhHHHHHHcCCceEEEech
Q 011106 101 PAFKEVISSLINQGRPPLCIIADIFFG------WTCGVAKELNVFHAIFSGS 146 (493)
Q Consensus 101 ~~l~~~l~~~~~~~~~pDlvI~D~~~~------~~~~~A~~lgiP~i~~~~~ 146 (493)
..+...++... ||+|++--.+. -+..+|+.||+|++++...
T Consensus 99 ~~La~~i~~~~-----~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 99 KALAAAIEKIG-----FDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHHHhC-----CCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 35556666666 99999864432 3779999999999997543
No 232
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=51.65 E-value=76 Score=29.56 Aligned_cols=43 Identities=23% Similarity=0.352 Sum_probs=32.7
Q ss_pred CeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccc
Q 011106 346 GLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPM 391 (493)
Q Consensus 346 nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~ 391 (493)
.+.+.+-++-.+||.+++. +||-.+ ..-.||+.+|+|++++..
T Consensus 184 ~~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred eEEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEecC
Confidence 3444566777899999885 777554 467899999999999863
No 233
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=51.52 E-value=1.4e+02 Score=24.94 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=21.5
Q ss_pred cCceeeccCch------hHHHHHHhCCcEecccc
Q 011106 364 TCAFLSHCGWN------SVLEALIHGVPIIGWPM 391 (493)
Q Consensus 364 v~~~I~HgG~g------s~~eal~~GvP~l~~P~ 391 (493)
..++++|+|-| .+.+|...++|+|++.-
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 34588886644 67788999999999963
No 234
>PRK07773 replicative DNA helicase; Validated
Probab=51.24 E-value=94 Score=34.83 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=33.6
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
+++..-|+.|=..-.+.+|...... .|..|.|++-+...+.+..
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~-~~~~V~~fSlEms~~ql~~ 263 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIR-HRLAVAIFSLEMSKEQLVM 263 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHh-cCCeEEEEecCCCHHHHHH
Confidence 5556678999999999999988751 4889999998765554443
No 235
>PLN02470 acetolactate synthase
Probab=51.13 E-value=72 Score=33.74 Aligned_cols=28 Identities=18% Similarity=0.382 Sum_probs=23.2
Q ss_pred CcCceeeccCch------hHHHHHHhCCcEeccc
Q 011106 363 ATCAFLSHCGWN------SVLEALIHGVPIIGWP 390 (493)
Q Consensus 363 ~v~~~I~HgG~g------s~~eal~~GvP~l~~P 390 (493)
.++++++|.|-| .+.+|...++|||++.
T Consensus 76 ~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 76 KVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 466688888855 7789999999999995
No 236
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=50.98 E-value=23 Score=30.97 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=36.1
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCC-CeEEEEEeCccchhhhhc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHK-NYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~-Gh~Vt~~~~~~~~~~v~~ 52 (493)
+||++.-.|+.| .+=...|++.|.+ . ||+|.++.++.....+..
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k--~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRD--VGEIETHLVISQAARQTLAH 46 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHh--hcCCeEEEEECHHHHHHHHH
Confidence 577777777777 6669999999988 6 999999999888777765
No 237
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=50.58 E-value=26 Score=32.55 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=40.1
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
...++|+-.++.|=..=..+||..|.+ +|+.|+|++.+.....++.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~--~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLK--AGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEEHHHHHHHHHH
Confidence 457888888888888888999999998 9999999999988777776
No 238
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=50.52 E-value=1.7e+02 Score=25.56 Aligned_cols=57 Identities=18% Similarity=0.166 Sum_probs=36.3
Q ss_pred cEEEEEC---CC-CcccHHHHH-HHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccC
Q 011106 6 ENIVMFP---FM-AQGHIIPFL-ALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPF 67 (493)
Q Consensus 6 ~~il~~~---~~-~~GH~~p~l-~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~ 67 (493)
+||+++- .| -+|=+--++ .|+..|++ +||+|++++.......-... . .+++...+|.
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~--~g~~v~Vyc~~~~~~~~~~~-y--~gv~l~~i~~ 63 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVS--KGIDVTVYCRSDYYPYKEFE-Y--NGVRLVYIPA 63 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhc--CCceEEEEEccCCCCCCCcc-c--CCeEEEEeCC
Confidence 4677765 33 366665544 78888888 99999999876544322111 1 5667777764
No 239
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=50.15 E-value=26 Score=30.63 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=35.2
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
+||++.-.++.|=+. ...+.+.|++ +|++|.++.++.....+..
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~--~g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTK--RGYQVTVLMTKAATKFITP 45 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHH--CCCEEEEEEChhHHHHcCH
Confidence 577777777666554 8999999999 9999999998877766653
No 240
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=48.96 E-value=1.6e+02 Score=29.91 Aligned_cols=36 Identities=8% Similarity=0.096 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEe
Q 011106 101 PAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFS 144 (493)
Q Consensus 101 ~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~ 144 (493)
.++.+.++..+ ||++|.... ...+|+.+|||++.++
T Consensus 367 ~e~~~~i~~~~-----pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 367 WHLRSLLFTEP-----VDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHHhhcC-----CCEEEECcc---HHHHHHHhCCCEEEee
Confidence 35556666666 999999863 6789999999998774
No 241
>PRK07206 hypothetical protein; Provisional
Probab=47.96 E-value=72 Score=31.98 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=24.9
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
+++|+++-.... -..+++++++ .|+++.+++..
T Consensus 2 ~k~~liv~~~~~-----~~~~~~a~~~--~G~~~v~v~~~ 34 (416)
T PRK07206 2 MKKVVIVDPFSS-----GKFLAPAFKK--RGIEPIAVTSS 34 (416)
T ss_pred CCeEEEEcCCch-----HHHHHHHHHH--cCCeEEEEEcC
Confidence 467888875433 3468999999 99998888755
No 242
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=47.75 E-value=91 Score=31.56 Aligned_cols=87 Identities=10% Similarity=0.008 Sum_probs=53.6
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCC
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLP 85 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~ 85 (493)
+|+++... -.....+++.|.+ -|-+|..+......+.... ++ .......+
T Consensus 312 krvai~~~-----~~~~~~l~~~l~e--lGm~v~~~~~~~~~~~~~~------------~~---------~~~~~~~D-- 361 (432)
T TIGR01285 312 KKVAIAAE-----PDLLAAWATFFTS--MGAQIVAAVTTTGSPLLQK------------LP---------VETVVIGD-- 361 (432)
T ss_pred CEEEEEcC-----HHHHHHHHHHHHH--CCCEEEEEEeCCCCHHHHh------------CC---------cCcEEeCC--
Confidence 56666652 2466888888888 8988877765543222211 01 00000001
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEe
Q 011106 86 YNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFS 144 (493)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~ 144 (493)
...+.+.+++.+ ||++|... ....+|+++|||++.+.
T Consensus 362 --------------~~~l~~~i~~~~-----~dliig~s---~~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 362 --------------LEDLEDLACAAG-----ADLLITNS---HGRALAQRLALPLVRAG 398 (432)
T ss_pred --------------HHHHHHHHhhcC-----CCEEEECc---chHHHHHHcCCCEEEec
Confidence 024456666666 99999986 35789999999999873
No 243
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=47.48 E-value=1.4e+02 Score=30.50 Aligned_cols=35 Identities=11% Similarity=-0.060 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEE
Q 011106 101 PAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIF 143 (493)
Q Consensus 101 ~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~ 143 (493)
..+.+.+++.+ ||++|... ....+|+.+|||++.+
T Consensus 385 ~e~~~~i~~~~-----pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 385 RELLKLLLEYK-----ADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHhhcC-----CCEEEEcc---chHHHHHhcCCCEEEc
Confidence 35666677777 99999873 3577888999999876
No 244
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=46.93 E-value=37 Score=31.48 Aligned_cols=41 Identities=12% Similarity=-0.213 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhcCCCCCcEEEECCcc------hhhHHHHHHcCCceEEEech
Q 011106 101 PAFKEVISSLINQGRPPLCIIADIFF------GWTCGVAKELNVFHAIFSGS 146 (493)
Q Consensus 101 ~~l~~~l~~~~~~~~~pDlvI~D~~~------~~~~~~A~~lgiP~i~~~~~ 146 (493)
..+...+++.. ||+||+-..+ .-+..+|+.||+|++++...
T Consensus 102 ~~La~ai~~~~-----~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 102 SALAAAAQKAG-----FDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHHhC-----CCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 34555666666 9999976332 25678999999999997543
No 245
>PRK14098 glycogen synthase; Provisional
Probab=46.83 E-value=34 Score=35.30 Aligned_cols=40 Identities=8% Similarity=0.184 Sum_probs=30.7
Q ss_pred CCCCCcEEEEECC--------CCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 1 MAQSKENIVMFPF--------MAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 1 m~~~~~~il~~~~--------~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
|+.+.+||++++. ++.|++ .-+|.++|++ +||+|.++.+.
T Consensus 1 ~~~~~~~il~v~~E~~p~~k~Ggl~dv--~~~Lp~al~~--~g~~v~v~~P~ 48 (489)
T PRK14098 1 MSRRNFKVLYVSGEVSPFVRVSALADF--MASFPQALEE--EGFEARIMMPK 48 (489)
T ss_pred CCCCCcEEEEEeecchhhcccchHHHH--HHHHHHHHHH--CCCeEEEEcCC
Confidence 5656689999872 444544 5678899999 99999999974
No 246
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=46.24 E-value=1.7e+02 Score=26.00 Aligned_cols=84 Identities=14% Similarity=0.208 Sum_probs=45.9
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc----chhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCC
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL----NIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENC 81 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~----~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~ 81 (493)
+||+++..+. |+ .+.+|.+.+.+...+++|.++.+.. ..+...+ .++.+..++.. .+..
T Consensus 2 ~ki~vl~sg~-gs--~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~-----~gIp~~~~~~~----~~~~----- 64 (200)
T PRK05647 2 KRIVVLASGN-GS--NLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEA-----AGIPTFVLDHK----DFPS----- 64 (200)
T ss_pred ceEEEEEcCC-Ch--hHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHH-----cCCCEEEECcc----ccCc-----
Confidence 6788888665 33 3446667777621247777764432 2223333 45666554421 1100
Q ss_pred CCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCc
Q 011106 82 DVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIF 125 (493)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~ 125 (493)
-....+.+.+.+++.. ||++|+-.+
T Consensus 65 --------------~~~~~~~~~~~l~~~~-----~D~iv~~~~ 89 (200)
T PRK05647 65 --------------REAFDAALVEALDAYQ-----PDLVVLAGF 89 (200)
T ss_pred --------------hhHhHHHHHHHHHHhC-----cCEEEhHHh
Confidence 0012245667777888 999988644
No 247
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=45.92 E-value=1.3e+02 Score=30.27 Aligned_cols=36 Identities=8% Similarity=-0.029 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEe
Q 011106 101 PAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFS 144 (493)
Q Consensus 101 ~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~ 144 (493)
.++.+.+++.+ ||+||.+.. ...+|+.+|+|++.++
T Consensus 361 ~el~~~i~~~~-----pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 361 WDLESLAKEEP-----VDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHHHhhccC-----CCEEEECch---hHHHHHhcCCCEEEec
Confidence 35555666666 999999974 5788999999998764
No 248
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=45.76 E-value=3.1e+02 Score=27.15 Aligned_cols=62 Identities=21% Similarity=0.146 Sum_probs=37.4
Q ss_pred eeeccCchhHHHHHHhCCcEec--ccccccc------hhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 367 FLSHCGWNSVLEALIHGVPIIG--WPMAAEQ------FFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 367 ~I~HgG~gs~~eal~~GvP~l~--~P~~~DQ------~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
+-|+ |..++..|+.+|.|+.. ++-+.|- ..|+.++.+.+-..+. .++.+++..+|.+++.|+
T Consensus 248 VEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vv-------vV~~~ei~aaI~~l~ede 317 (457)
T KOG1250|consen 248 VETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVV-------VVEDDEIAAAILRLFEDE 317 (457)
T ss_pred Eeec-CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEE-------EeccHHHHHHHHHHHHhh
Confidence 4443 46678888888887532 1223332 2355555544222322 367899999999999876
No 249
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=45.51 E-value=1.9e+02 Score=24.59 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=28.2
Q ss_pred EEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFV 41 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~ 41 (493)
-|.+++.++.|=....+.+|-+... +|++|.|+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~--~g~~v~~v 36 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALG--HGYRVGVV 36 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEE
Confidence 4677888899999988888888888 99999995
No 250
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=45.45 E-value=1.9e+02 Score=26.58 Aligned_cols=31 Identities=13% Similarity=0.056 Sum_probs=23.2
Q ss_pred CCcEE-EECCcch-hhHHHHHHcCCceEEEech
Q 011106 116 PPLCI-IADIFFG-WTCGVAKELNVFHAIFSGS 146 (493)
Q Consensus 116 ~pDlv-I~D~~~~-~~~~~A~~lgiP~i~~~~~ 146 (493)
-||++ |.|+..- -+..=|.++|||+|.+.-+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 49988 5676543 5667899999999998544
No 251
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=45.17 E-value=42 Score=26.96 Aligned_cols=37 Identities=11% Similarity=0.124 Sum_probs=33.6
Q ss_pred EEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
|+++.+.++-.|..-..-++.-|.. .|++|.+.....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~--~G~~vi~lG~~v 37 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRD--AGFEVIYTGLRQ 37 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHH--CCCEEEECCCCC
Confidence 6889999999999999999999999 999999998643
No 252
>PRK06988 putative formyltransferase; Provisional
Probab=44.84 E-value=2e+02 Score=27.62 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=22.4
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
+||+|+..+.. .+...+.|.+ +||+|..+.+.
T Consensus 3 mkIvf~Gs~~~-----a~~~L~~L~~--~~~~i~~Vvt~ 34 (312)
T PRK06988 3 PRAVVFAYHNV-----GVRCLQVLLA--RGVDVALVVTH 34 (312)
T ss_pred cEEEEEeCcHH-----HHHHHHHHHh--CCCCEEEEEcC
Confidence 68999865542 3455677788 89998777654
No 253
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=44.35 E-value=52 Score=30.22 Aligned_cols=126 Identities=13% Similarity=-0.015 Sum_probs=68.7
Q ss_pred CcEEEEECC-CCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCC-------CC---CCceEEeccCCCCCCC
Q 011106 5 KENIVMFPF-MAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLP-------PN---SSIDLHEIPFNSSSHG 73 (493)
Q Consensus 5 ~~~il~~~~-~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~-------~~---~~i~~~~i~~~~~~~~ 73 (493)
..|-.|+-. ++-|-..-.-.||-.|.. -+|.|.++++.+.+..-.+.+. .. .++-..+|....+...
T Consensus 18 slKwifVGGKGGVGKTTcs~sLAvqla~--~r~~vLiISTDPAHNlSDAF~qkftk~pt~V~Gf~nLfAMEIDp~~e~~~ 95 (323)
T KOG2825|consen 18 SLKWIFVGGKGGVGKTTCSCSLAVQLAK--VRESVLIISTDPAHNLSDAFSQKFTKTPTKVEGFENLFAMEIDPNVEMGD 95 (323)
T ss_pred eeeEEEEcCcCCcCccchhhHHHHHHhc--cCCceEEeecCcccchHHHHHHHhcCCCccccChhhheeeecCCchhhhh
Confidence 346666664 788999999999999999 9999999998765443332211 10 3333344443322222
Q ss_pred CCCCCCCCCC-C---ChhhHHHHHHHHh-----hhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCc
Q 011106 74 LPPNSENCDV-L---PYNLVIHLLRAST-----SLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVF 139 (493)
Q Consensus 74 l~~~~~~~~~-~---~~~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP 139 (493)
+++....... . ....+..+..++. ....++.++++... +|+||.|.. +....-+.+..|
T Consensus 96 ~~~m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~~~-----F~~vVFDTA--PTGHTLRlL~fP 163 (323)
T KOG2825|consen 96 MPEMFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKGMN-----FDVVVFDTA--PTGHTLRLLQFP 163 (323)
T ss_pred hHHHhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhccc-----cceEEeccC--CCcceehhhccc
Confidence 3222211110 0 1112233333332 23445556667766 999999953 233444555555
No 254
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=44.13 E-value=1.4e+02 Score=30.62 Aligned_cols=34 Identities=3% Similarity=-0.107 Sum_probs=26.3
Q ss_pred HHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEE
Q 011106 102 AFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIF 143 (493)
Q Consensus 102 ~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~ 143 (493)
++.+.+++.+ ||++|... ....+|+.+|||++-.
T Consensus 384 e~~~~i~~~~-----pDliig~s---~~~~~a~k~giP~~~~ 417 (475)
T PRK14478 384 ELYKMLKEAK-----ADIMLSGG---RSQFIALKAGMPWLDI 417 (475)
T ss_pred HHHHHHhhcC-----CCEEEecC---chhhhhhhcCCCEEEc
Confidence 4555666666 99999983 5678999999999843
No 255
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=44.08 E-value=1.9e+02 Score=24.08 Aligned_cols=97 Identities=11% Similarity=0.046 Sum_probs=59.0
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCC--CeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCC
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHK--NYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCD 82 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~--Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~ 82 (493)
+++|++.. .-.+=.-++.+|+.|.+ . ||++ ++ ++...+.+.+. .|+....+-. + +.+
T Consensus 4 ~~~v~lsv--~d~dK~~l~~~a~~l~~--ll~Gf~l-~A-T~gTa~~L~~~----~Gi~v~~vi~-----~-~~g----- 62 (142)
T PRK05234 4 RKRIALIA--HDHKKDDLVAWVKAHKD--LLEQHEL-YA-TGTTGGLIQEA----TGLDVTRLLS-----G-PLG----- 62 (142)
T ss_pred CcEEEEEE--eccchHHHHHHHHHHHH--HhcCCEE-EE-eChHHHHHHhc----cCCeeEEEEc-----C-CCC-----
Confidence 45566655 55566778999999999 8 9995 34 45555666663 1444433310 0 110
Q ss_pred CCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECC--cch--------hhHHHHHHcCCceEEE
Q 011106 83 VLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADI--FFG--------WTCGVAKELNVFHAIF 143 (493)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~--~~~--------~~~~~A~~lgiP~i~~ 143 (493)
..+++.+.+.+-. +|+||.-. ... ....+|-.++||+++-
T Consensus 63 ----------------g~~~i~~~I~~g~-----i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 63 ----------------GDQQIGALIAEGK-----IDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred ----------------CchhHHHHHHcCc-----eeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcC
Confidence 0135556666655 99999843 321 2335788999999884
No 256
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=44.04 E-value=76 Score=30.48 Aligned_cols=135 Identities=13% Similarity=0.037 Sum_probs=73.1
Q ss_pred CcEEE-EeccCCc--CCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEee--c
Q 011106 278 NSVLY-ISFGSMN--TISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKN--W 352 (493)
Q Consensus 278 ~~~V~-vs~GS~~--~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~--~ 352 (493)
++.|. +-.||.. ..+.+.+.++++.+.+.+.++++..|+.. |.. .-+...+. ..++.+.+ -
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~------e~~----~~~~i~~~----~~~~~l~g~~s 243 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEH------EEQ----RAKRLAEG----FPYVEVLPKLS 243 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHH------HHH----HHHHHHcc----CCcceecCCCC
Confidence 34544 4444443 36788899999998777777766545321 110 11111110 12233322 2
Q ss_pred cCh-HHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhce-eEEeec--CCCCccCHHHHHHH
Q 011106 353 APQ-LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGV-CVEVAR--GKTCEVKHEDVVAK 428 (493)
Q Consensus 353 ~pq-~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~-G~~~~~--~~~~~~~~~~l~~a 428 (493)
+.+ ..+++++++ ||+ .-.|...=|...|+|+|.+=-..|...++-. |- ...+.+ .--..+++++|.++
T Consensus 244 L~elaali~~a~l--~I~-nDSGp~HlA~A~g~p~valfGpt~p~~~~p~-----~~~~~~~~~~~~cm~~I~~e~V~~~ 315 (322)
T PRK10964 244 LEQVARVLAGAKA--VVS-VDTGLSHLTAALDRPNITLYGPTDPGLIGGY-----GKNQHACRSPGKSMADLSAETVFQK 315 (322)
T ss_pred HHHHHHHHHhCCE--EEe-cCCcHHHHHHHhCCCEEEEECCCCcccccCC-----CCCceeecCCCcccccCCHHHHHHH
Confidence 344 668888886 777 5567888999999999987211111111100 00 000110 01245889999999
Q ss_pred HHHHhc
Q 011106 429 IELVMN 434 (493)
Q Consensus 429 i~~~l~ 434 (493)
++++|+
T Consensus 316 ~~~~l~ 321 (322)
T PRK10964 316 LETLIS 321 (322)
T ss_pred HHHHhh
Confidence 888774
No 257
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.81 E-value=38 Score=32.37 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=39.1
Q ss_pred cCceeeccCchhHHHHHHh----CCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 364 TCAFLSHCGWNSVLEALIH----GVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 364 v~~~I~HgG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
++++|+=||=||++.+.+. ++|++.+-+. .+|.- ...+.+++.+++.++++++
T Consensus 69 ~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~G--------------~lGFL------t~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 69 MKFAIVLGGDGTVLSAARQLAPCGIPLLTINTG--------------HLGFL------TEAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred cCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCccc------ccCCHHHHHHHHHHHHcCC
Confidence 3459999999999999775 7898888320 12211 3457899999999999866
No 258
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=43.76 E-value=2.3e+02 Score=24.98 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=32.2
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVS 42 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~ 42 (493)
+-.|.+++..+.|=....+.+|-+... +|++|.++-
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g--~G~~V~ivQ 57 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVG--HGKKVGVVQ 57 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHH--CCCeEEEEE
Confidence 347899999999999999999999999 999999985
No 259
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.55 E-value=43 Score=31.78 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=38.7
Q ss_pred CceeeccCchhHHHHHHh----CCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 365 CAFLSHCGWNSVLEALIH----GVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 365 ~~~I~HgG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
+++|+=||=||++.+++. ++|++.+-+. + +|. + ...+++++.+++++++++.
T Consensus 66 dlvi~lGGDGT~L~aa~~~~~~~~PilGIN~G------------~--lGF-L-----t~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 66 DMVISIGGDGTFLRTATYVGNSNIPILGINTG------------R--LGF-L-----ATVSKEEIEETIDELLNGD 121 (292)
T ss_pred CEEEEECCcHHHHHHHHHhcCCCCCEEEEecC------------C--CCc-c-----cccCHHHHHHHHHHHHcCC
Confidence 359999999999999874 7888887421 1 232 2 3467899999999999876
No 260
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=43.38 E-value=49 Score=27.47 Aligned_cols=40 Identities=8% Similarity=0.102 Sum_probs=35.8
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
.++||++.+.+.-||-.-.--+++.|.. .|.+|.....-.
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d--~GfeVi~~g~~~ 50 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALAD--AGFEVINLGLFQ 50 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHh--CCceEEecCCcC
Confidence 5789999999999999999999999999 999999876443
No 261
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=43.24 E-value=47 Score=21.34 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 011106 421 KHEDVVAKIELVMNETDKGKEIRRKVSEVR 450 (493)
Q Consensus 421 ~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~ 450 (493)
|+++|.+||..+.++. . ++++.|+++.
T Consensus 1 tee~l~~Ai~~v~~g~-~--S~r~AA~~yg 27 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK-M--SIRKAAKKYG 27 (45)
T ss_dssp -HHHHHHHHHHHHTTS-S---HHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCC-C--CHHHHHHHHC
Confidence 5789999999999762 1 7777777653
No 262
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=43.09 E-value=79 Score=28.83 Aligned_cols=97 Identities=13% Similarity=0.163 Sum_probs=52.0
Q ss_pred CCcEEEEeccCCc---CCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccC-C-CCeEEee
Q 011106 277 ENSVLYISFGSMN---TISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDS-K-RGLLMKN 351 (493)
Q Consensus 277 ~~~~V~vs~GS~~---~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~-~nv~~~~ 351 (493)
+++.|.|..|+.. ..+.+.+.++++.+.+.+.++++..+.. +.. ........++ . ..+.+..
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~-------~~~------~~~~~~~~~~~~~~~~~~~~ 170 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE-------EQE------KEIADQIAAGLQNPVINLAG 170 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH-------HHH------HHHHHHHHTTHTTTTEEETT
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch-------HHH------HHHHHHHHHhcccceEeecC
Confidence 3567888888764 3578889999999988876665554432 100 0111111100 1 1233322
Q ss_pred c--cCh-HHhhccCCcCceeeccCchhHHHHHHhCCcEecc
Q 011106 352 W--APQ-LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGW 389 (493)
Q Consensus 352 ~--~pq-~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~ 389 (493)
- +.+ ..+++++++ +|+ .-.|.+.=|.+.|+|+|++
T Consensus 171 ~~~l~e~~ali~~a~~--~I~-~Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 171 KTSLRELAALISRADL--VIG-NDTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp TS-HHHHHHHHHTSSE--EEE-ESSHHHHHHHHTT--EEEE
T ss_pred CCCHHHHHHHHhcCCE--EEe-cCChHHHHHHHHhCCEEEE
Confidence 2 233 568888885 776 5667889999999999998
No 263
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=42.86 E-value=48 Score=34.12 Aligned_cols=44 Identities=7% Similarity=-0.053 Sum_probs=36.2
Q ss_pred EEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
-+++.-.|+.|=..-.++++....+ +|..+.+++.+...+.+..
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~--~ge~~~y~s~eEs~~~i~~ 308 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACA--NKERAILFAYEESRAQLLR 308 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEEeeCCHHHHHH
Confidence 4566667899999999999999999 9999999998766555544
No 264
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=42.77 E-value=1.6e+02 Score=30.42 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=26.1
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
+|||++..+++.| +|+++|++..+|++|.++...
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g~ 34 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSSY 34 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEECC
Confidence 5899999999888 578888872238998888543
No 265
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=42.69 E-value=44 Score=27.39 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccC
Q 011106 17 GHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSL 54 (493)
Q Consensus 17 GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~ 54 (493)
-.+.-.+=|+..|++ +||+|+++.++....+++-+.
T Consensus 11 vq~p~alYl~~~Lk~--~G~~v~Va~npAA~kLl~vaD 46 (139)
T PF09001_consen 11 VQTPSALYLSYKLKK--KGFEVVVAGNPAALKLLEVAD 46 (139)
T ss_dssp THHHHHHHHHHHHHC--TTEEEEEEE-HHHHHHHHHHS
T ss_pred chhHHHHHHHHHHHh--cCCeEEEecCHHHHhHhhhcC
Confidence 344557788999999 999999999999888888643
No 266
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=42.52 E-value=25 Score=32.09 Aligned_cols=37 Identities=16% Similarity=0.053 Sum_probs=27.2
Q ss_pred cEEEEECCCCcccHHHH------------HHHHHHHHhcCCCeEEEEEeCc
Q 011106 6 ENIVMFPFMAQGHIIPF------------LALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~------------l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
|||++...|+.=.+.|. .+||+.|.+ +||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~--~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLA--AGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHh--CCCEEEEEECc
Confidence 35666666666655552 488999999 99999999743
No 267
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=42.46 E-value=1.4e+02 Score=30.07 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=21.5
Q ss_pred CcEEEECCcchhhHHHHHHcCCceEEEe
Q 011106 117 PLCIIADIFFGWTCGVAKELNVFHAIFS 144 (493)
Q Consensus 117 pDlvI~D~~~~~~~~~A~~lgiP~i~~~ 144 (493)
||++|... .+..+|+.+|||++.+.
T Consensus 351 pDl~Ig~s---~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 351 PDLAIGTT---PLVQYAKEKGIPALYYT 375 (416)
T ss_pred CCEEEeCC---hhhHHHHHhCCCEEEec
Confidence 99999884 46789999999998864
No 268
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=42.31 E-value=44 Score=29.28 Aligned_cols=42 Identities=5% Similarity=-0.074 Sum_probs=32.8
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhh
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKK 49 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~ 49 (493)
+||++--.|+.|=+.-.+.+.+.|.+ .|++|+++.++.....
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~--~g~~V~vI~S~~A~~~ 42 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVD--EGAEVTPIVSETVQTT 42 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHh--CcCEEEEEEchhHHHH
Confidence 36777766777766666799999999 9999999988765543
No 269
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=42.20 E-value=57 Score=28.32 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=19.6
Q ss_pred EEECCCCcccHHHHHHHHHHHHhc
Q 011106 9 VMFPFMAQGHIIPFLALALHIEQR 32 (493)
Q Consensus 9 l~~~~~~~GH~~p~l~LA~~L~~~ 32 (493)
.++-.|+.||..=|+.|-++|.+.
T Consensus 41 ~lVvlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 41 TLVVLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhh
Confidence 344458999999999999999773
No 270
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.09 E-value=42 Score=31.85 Aligned_cols=53 Identities=11% Similarity=0.146 Sum_probs=38.2
Q ss_pred cCceeeccCchhHHHHHHh----CCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 364 TCAFLSHCGWNSVLEALIH----GVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 364 v~~~I~HgG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
++++|+=||=||++.+++. ++|++.+-.. . +|.- ..++++++.+++++++++.
T Consensus 64 ~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G------------~--lGFl------~~~~~~~~~~~l~~i~~g~ 120 (292)
T PRK03378 64 ADLAIVVGGDGNMLGAARVLARYDIKVIGINRG------------N--LGFL------TDLDPDNALQQLSDVLEGH 120 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCeEEEEECC------------C--CCcc------cccCHHHHHHHHHHHHcCC
Confidence 3459999999999999753 6787777321 1 2322 2356889999999999766
No 271
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.07 E-value=49 Score=31.50 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=38.9
Q ss_pred cCceeeccCchhHHHHHHh----CCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 364 TCAFLSHCGWNSVLEALIH----GVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 364 v~~~I~HgG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
++++|+=||=||++.+.+. ++|++.+-.. + +|.- ..++.+++.+++.++++++
T Consensus 69 ~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN~G------------~--lGFL------~~~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 69 CDLVAVLGGDGTFLSVAREIAPRAVPIIGINQG------------H--LGFL------TQIPREYMTDKLLPVLEGK 125 (296)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCEEEEecC------------C--CeEe------eccCHHHHHHHHHHHHcCC
Confidence 3459999999999999753 7898887321 1 3322 2367899999999999765
No 272
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=42.02 E-value=1.1e+02 Score=29.76 Aligned_cols=99 Identities=9% Similarity=0.050 Sum_probs=58.7
Q ss_pred CCcEEEEeccCCc----CCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccC-CCC-eEEe
Q 011106 277 ENSVLYISFGSMN----TISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDS-KRG-LLMK 350 (493)
Q Consensus 277 ~~~~V~vs~GS~~----~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~n-v~~~ 350 (493)
+++.|.|..|+.. ..+.+.+.++++.+...+.++++.-+.. +.. .-.......... ..+ +.+.
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~-------e~~----~~~~i~~~~~~~~~~~~~~l~ 247 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAK-------DHE----AGNEILAALNTEQQAWCRNLA 247 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHH-------hHH----HHHHHHHhcccccccceeecc
Confidence 4568888888742 2577889999988877677776653322 110 111111111000 011 1222
Q ss_pred ec--cCh-HHhhccCCcCceeeccCchhHHHHHHhCCcEecc
Q 011106 351 NW--APQ-LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGW 389 (493)
Q Consensus 351 ~~--~pq-~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~ 389 (493)
+- +.+ ..+++++++ ||+ .-.|-+.=|.+.|+|+|.+
T Consensus 248 g~~sL~el~ali~~a~l--~I~-nDTGp~HlAaA~g~P~val 286 (348)
T PRK10916 248 GETQLEQAVILIAACKA--IVT-NDSGLMHVAAALNRPLVAL 286 (348)
T ss_pred CCCCHHHHHHHHHhCCE--EEe-cCChHHHHHHHhCCCEEEE
Confidence 22 334 568888885 777 5678889999999999876
No 273
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=41.86 E-value=2.9e+02 Score=26.53 Aligned_cols=99 Identities=14% Similarity=0.089 Sum_probs=57.3
Q ss_pred cEEEEECCCCcc-----cHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCC
Q 011106 6 ENIVMFPFMAQG-----HIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSEN 80 (493)
Q Consensus 6 ~~il~~~~~~~G-----H~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~ 80 (493)
+-|++.|+.+.| ...-+.+|++.|.+ +|++|.++.++...+..+.... . .+ .....
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~--~~~~ivl~G~~~e~~~~~~i~~---~-----~~---------~~~~~ 235 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLID--QGYQVVLFGSAKDHPAGNEIEA---L-----LP---------GELRN 235 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHH--CCCEEEEEEChhhHHHHHHHHH---h-----CC---------ccccc
Confidence 446666644333 13358899999998 8999998887766554443210 0 00 00000
Q ss_pred CCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEec
Q 011106 81 CDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSG 145 (493)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~ 145 (493)
.... ....++..+++. .|++|+- ......+|..+|+|.+.+..
T Consensus 236 l~g~-------------~sL~el~ali~~-------a~l~I~~--DSGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 236 LAGE-------------TSLDEAVDLIAL-------AKAVVTN--DSGLMHVAAALNRPLVALYG 278 (334)
T ss_pred CCCC-------------CCHHHHHHHHHh-------CCEEEee--CCHHHHHHHHcCCCEEEEEC
Confidence 0000 011234444443 7899876 23567899999999998854
No 274
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=41.84 E-value=22 Score=36.10 Aligned_cols=54 Identities=9% Similarity=0.086 Sum_probs=39.1
Q ss_pred hHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 375 SVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 375 s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
++.||+++|+|++.. ++..=+..|+ ..--|.-+++ ..-....+++++.++..|+
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV~-~~~tG~l~dp---~~e~~~~~a~~~~kl~~~p 434 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIVV-HGVTGLLIDP---GQEAVAELADALLKLRRDP 434 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEEE-cCCcceeeCC---chHHHHHHHHHHHHHhcCH
Confidence 788999999999987 4444455555 4134777765 3334447999999999999
No 275
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=41.67 E-value=2.3e+02 Score=24.48 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=29.6
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFV 41 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~ 41 (493)
--|.+++..+.|=..-.+.+|-+... +|++|.++
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~--~g~~v~iv 39 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALG--HGKKVGVI 39 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHH--CCCeEEEE
Confidence 35778888999999999999999999 99999766
No 276
>PRK09620 hypothetical protein; Provisional
Probab=41.31 E-value=30 Score=31.49 Aligned_cols=38 Identities=5% Similarity=-0.069 Sum_probs=29.2
Q ss_pred CcEEEEECCCCcccHHH------------HHHHHHHHHhcCCCeEEEEEeCc
Q 011106 5 KENIVMFPFMAQGHIIP------------FLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p------------~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
-++|++...|+.=.+.| -.+||+.|.+ +|++|+++...
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~--~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELIS--KGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 46788887776655444 2589999999 99999999754
No 277
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=40.81 E-value=1.5e+02 Score=29.20 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=32.6
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhh
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKL 50 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v 50 (493)
+++.--|+.|=..-++++|..+.. .|..|.+++.+...+.+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~--~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAK--RGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEECCcCHHHH
Confidence 445556899999999999999999 88999999877544443
No 278
>PRK10867 signal recognition particle protein; Provisional
Probab=40.66 E-value=1.4e+02 Score=30.12 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=34.5
Q ss_pred EEEEECCCCcccHHHHHHHHHHHHhcCC-CeEEEEEeCccchhh
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIEQRHK-NYSITFVSTPLNIKK 49 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~~~~~-Gh~Vt~~~~~~~~~~ 49 (493)
-|+|+..++.|=..-...||..|.. + |+.|.+++...++..
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~--~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKK--KKKKKVLLVAADVYRPA 143 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH--hcCCcEEEEEccccchH
Confidence 4566667899999999999999999 8 999999998766553
No 279
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=40.30 E-value=2.4e+02 Score=24.22 Aligned_cols=74 Identities=14% Similarity=0.072 Sum_probs=39.8
Q ss_pred hHHHHHHHhcCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCC
Q 011106 228 IGFIYLKRKLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASG 307 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~ 307 (493)
.....++..+ |.+..+|-....- .....+++.+.+....++ +|+|++|+= .+-..+.+-....+
T Consensus 61 ~~~~~l~~~y-p~l~i~g~~~g~~---------~~~~~~~i~~~I~~~~pd-iv~vglG~P-----kQE~~~~~~~~~l~ 124 (171)
T cd06533 61 KAAERLRARY-PGLKIVGYHHGYF---------GPEEEEEIIERINASGAD-ILFVGLGAP-----KQELWIARHKDRLP 124 (171)
T ss_pred HHHHHHHHHC-CCcEEEEecCCCC---------ChhhHHHHHHHHHHcCCC-EEEEECCCC-----HHHHHHHHHHHHCC
Confidence 3334566666 5677776322221 011233456666655543 999999843 23233344444457
Q ss_pred CcEEEEEcCC
Q 011106 308 KNFIWVVRPP 317 (493)
Q Consensus 308 ~~vi~~~~~~ 317 (493)
..++..+|..
T Consensus 125 ~~v~~~vG~~ 134 (171)
T cd06533 125 VPVAIGVGGS 134 (171)
T ss_pred CCEEEEecee
Confidence 7777777754
No 280
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=40.26 E-value=2.7e+02 Score=26.97 Aligned_cols=100 Identities=17% Similarity=0.165 Sum_probs=58.6
Q ss_pred cEEEEECCCCcc-----cHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCC
Q 011106 6 ENIVMFPFMAQG-----HIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSEN 80 (493)
Q Consensus 6 ~~il~~~~~~~G-----H~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~ 80 (493)
+.|+|.|..+.| -..-+..|++.|.+ +|++|.++.++...+..++... ..+....
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~--~~~~Vvl~g~~~e~e~~~~i~~-----------------~~~~~~~- 235 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIA--KGYQVVLFGGPDEEERAEEIAK-----------------GLPNAVI- 235 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHH--CCCEEEEecChHHHHHHHHHHH-----------------hcCCccc-
Confidence 567777762331 23458899999999 9999999888755555444221 0000000
Q ss_pred CCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechh
Q 011106 81 CDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSG 147 (493)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~ 147 (493)
.. +. ....++..++. . .|++|+- ......+|..+|.|+|.+....
T Consensus 236 l~--~k-----------~sL~e~~~li~--~-----a~l~I~~--DSg~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 236 LA--GK-----------TSLEELAALIA--G-----ADLVIGN--DSGPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred cC--CC-----------CCHHHHHHHHh--c-----CCEEEcc--CChHHHHHHHcCCCEEEEECCC
Confidence 00 00 01122233332 2 7888865 2356789999999999986543
No 281
>PRK11519 tyrosine kinase; Provisional
Probab=39.77 E-value=3e+02 Score=30.09 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=31.2
Q ss_pred CcEEEEEC--CCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 5 KENIVMFP--FMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 5 ~~~il~~~--~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
+.|+++++ .|+-|=..-...||..|.. .|++|.++-..
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~--~g~rvLlID~D 564 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQ--TNKRVLLIDCD 564 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHh--CCCcEEEEeCC
Confidence 34566655 4799999999999999999 99999999654
No 282
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=39.71 E-value=2.2e+02 Score=26.25 Aligned_cols=103 Identities=12% Similarity=0.046 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCC-----CCCCCCCCCCCCChhhHHHHHHHH
Q 011106 22 FLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSH-----GLPPNSENCDVLPYNLVIHLLRAS 96 (493)
Q Consensus 22 ~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~ 96 (493)
+-.+++.+.+ .|-+|.+.+..++...+...... ..+-+.-+|.+.... +++...--. + .-
T Consensus 117 ~~ea~~~~~~--~~~rVflt~G~~~l~~f~~~~~~-~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia----------~--~G 181 (257)
T COG2099 117 IEEAAEAAKQ--LGRRVFLTTGRQNLAHFVAADAH-SHVLARVLPPPDVLAKCEDLGVPPARIIA----------M--RG 181 (257)
T ss_pred HHHHHHHHhc--cCCcEEEecCccchHHHhcCccc-ceEEEEEcCchHHHHHHHhcCCChhhEEE----------e--cC
Confidence 3456677777 67777777777777777765442 234444444321111 111110000 0 00
Q ss_pred hhhhHHHHHHHHHhhcCCCCCcEEEECCcc-----hhhHHHHHHcCCceEEEe
Q 011106 97 TSLKPAFKEVISSLINQGRPPLCIIADIFF-----GWTCGVAKELNVFHAIFS 144 (493)
Q Consensus 97 ~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~-----~~~~~~A~~lgiP~i~~~ 144 (493)
....+.-..++++.. .|+||+-..- ..=..+|+.+|||+|.+-
T Consensus 182 Pfs~~~n~all~q~~-----id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~ 229 (257)
T COG2099 182 PFSEEDNKALLEQYR-----IDVVVTKNSGGAGGTYEKIEAARELGIPVIMIE 229 (257)
T ss_pred CcChHHHHHHHHHhC-----CCEEEEccCCcccCcHHHHHHHHHcCCcEEEEe
Confidence 123345566788888 9999987432 223469999999999984
No 283
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=39.71 E-value=53 Score=29.85 Aligned_cols=40 Identities=10% Similarity=0.014 Sum_probs=32.3
Q ss_pred EEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchh
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIK 48 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~ 48 (493)
-+++...++.|-..-..+++....+ +|..|.|++.....+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~--~g~~~~y~~~e~~~~ 66 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALK--QGKKVYVITTENTSK 66 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHh--CCCEEEEEEcCCCHH
Confidence 4555667899999999999888778 899999999865443
No 284
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=39.68 E-value=55 Score=27.96 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=21.3
Q ss_pred cCceeeccCch------hHHHHHHhCCcEeccc
Q 011106 364 TCAFLSHCGWN------SVLEALIHGVPIIGWP 390 (493)
Q Consensus 364 v~~~I~HgG~g------s~~eal~~GvP~l~~P 390 (493)
.+++++|+|-| .+.+|...++|||++.
T Consensus 61 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 61 PVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CEEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 33477888754 6779999999999995
No 285
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=39.30 E-value=2.5e+02 Score=24.12 Aligned_cols=84 Identities=14% Similarity=0.090 Sum_probs=46.4
Q ss_pred EeccccccchhHHHHHHHhcCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHH
Q 011106 218 LCNTIEEFDQIGFIYLKRKLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMM 297 (493)
Q Consensus 218 l~~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~ 297 (493)
++-+-++.-......+...+ |.+..+|-....- .....+.+.+.+....++ +|+|++|+= .+-.
T Consensus 53 llG~~~~~~~~~~~~l~~~y-P~l~ivg~~~g~f---------~~~~~~~i~~~I~~~~pd-iv~vglG~P-----kQE~ 116 (172)
T PF03808_consen 53 LLGGSEEVLEKAAANLRRRY-PGLRIVGYHHGYF---------DEEEEEAIINRINASGPD-IVFVGLGAP-----KQER 116 (172)
T ss_pred EEeCCHHHHHHHHHHHHHHC-CCeEEEEecCCCC---------ChhhHHHHHHHHHHcCCC-EEEEECCCC-----HHHH
Confidence 33333333334455667777 4666666333211 012456677777665543 999999843 3333
Q ss_pred HHHHHHHhCCCcEEEEEcCC
Q 011106 298 QLAMALEASGKNFIWVVRPP 317 (493)
Q Consensus 298 ~i~~al~~~~~~vi~~~~~~ 317 (493)
.+.+-....+..+++.+|.-
T Consensus 117 ~~~~~~~~l~~~v~i~vG~~ 136 (172)
T PF03808_consen 117 WIARHRQRLPAGVIIGVGGA 136 (172)
T ss_pred HHHHHHHHCCCCEEEEECch
Confidence 34455555777777676654
No 286
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=39.29 E-value=99 Score=26.29 Aligned_cols=100 Identities=12% Similarity=0.067 Sum_probs=52.3
Q ss_pred hhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCC
Q 011106 265 IKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSK 344 (493)
Q Consensus 265 ~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 344 (493)
..++-++|-+.. ...|+ |. .......+.++..+.+-+++-++.... . ....+ .
T Consensus 20 A~~lg~~La~~g---~~lv~-Gg----~~GlM~a~a~ga~~~gg~viGVlp~~l-----------~-~~~~~-------~ 72 (159)
T TIGR00725 20 AYRLGKELAKKG---HILIN-GG----RTGVMEAVSKGAREAGGLVVGILPDED-----------F-AGNPY-------L 72 (159)
T ss_pred HHHHHHHHHHCC---CEEEc-CC----chhHHHHHHHHHHHCCCeEEEECChhh-----------c-cCCCC-------c
Confidence 345666665442 45555 42 223444466666666777765554321 0 00000 1
Q ss_pred CCeEEeec-cChHHhhccCCcCceeeccCchhHH---HHHHhCCcEecccc
Q 011106 345 RGLLMKNW-APQLEVLSHRATCAFLSHCGWNSVL---EALIHGVPIIGWPM 391 (493)
Q Consensus 345 ~nv~~~~~-~pq~~lL~~~~v~~~I~HgG~gs~~---eal~~GvP~l~~P~ 391 (493)
......++ .+-..++...+-..++--||.||+- |++.+++|+++++.
T Consensus 73 ~~~i~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 73 TIKVKTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred eEEEECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 11122233 3344444443333566678888765 56889999999874
No 287
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=39.17 E-value=1.6e+02 Score=28.80 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=25.1
Q ss_pred hhccCCcCceeeccCchh---HHHHHHhCCcEeccc
Q 011106 358 VLSHRATCAFLSHCGWNS---VLEALIHGVPIIGWP 390 (493)
Q Consensus 358 lL~~~~v~~~I~HgG~gs---~~eal~~GvP~l~~P 390 (493)
++.+-+-+++|++||+=| +..|...|+|+++.=
T Consensus 86 i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e 121 (352)
T PRK12446 86 RIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHE 121 (352)
T ss_pred HHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEEC
Confidence 344433345999999997 889999999998753
No 288
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=38.90 E-value=1.1e+02 Score=30.83 Aligned_cols=32 Identities=22% Similarity=0.163 Sum_probs=24.6
Q ss_pred HHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEE
Q 011106 104 KEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIF 143 (493)
Q Consensus 104 ~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~ 143 (493)
.+.+.+.+ ||+||...+ ...+|+.+|||++.+
T Consensus 351 ~~~~~~~~-----pdliig~s~---~~~~a~~lgip~~~~ 382 (415)
T cd01977 351 FEILEMLK-----PDIILTGPR---VGELVKKLHVPYVNI 382 (415)
T ss_pred HHHHHhcC-----CCEEEecCc---cchhhhhcCCCEEec
Confidence 33455666 999999864 447899999999886
No 289
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.87 E-value=50 Score=30.94 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=37.8
Q ss_pred cCceeeccCchhHHHHHHh-CCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 364 TCAFLSHCGWNSVLEALIH-GVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 364 v~~~I~HgG~gs~~eal~~-GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
.+++|+=||=||++.+.+. .+|++.+-. - .+|.- ...+.+++.+++++++++.
T Consensus 53 ~D~vi~lGGDGT~L~a~~~~~~PilGIN~--------G------~lGFL------~~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 53 ADVIITIGGDGTILRTLQRAKGPILGINM--------G------GLGFL------TEIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCEEEEEcCcHHHHHHHHHcCCCEEEEEC--------C------CCccC------cccCHHHHHHHHHHHHcCC
Confidence 3459999999999999884 557666521 0 12221 3467899999999999866
No 290
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.80 E-value=44 Score=31.30 Aligned_cols=58 Identities=12% Similarity=0.178 Sum_probs=39.4
Q ss_pred HHhhccCCcCceeeccCchhHHHHHHh----CCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHH
Q 011106 356 LEVLSHRATCAFLSHCGWNSVLEALIH----GVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIEL 431 (493)
Q Consensus 356 ~~lL~~~~v~~~I~HgG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~ 431 (493)
.++...++ ++|+=||=||++.+.+. ++|++.+-+. .+|.- ...+++++.+++.+
T Consensus 37 ~~~~~~~d--~vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL------~~~~~~~~~~~l~~ 94 (272)
T PRK02231 37 EEIGQRAQ--LAIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFL------TDIDPKNAYEQLEA 94 (272)
T ss_pred HHhCcCCC--EEEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCccc------ccCCHHHHHHHHHH
Confidence 34444445 59999999999988653 6788877321 13322 23577888888888
Q ss_pred HhcC
Q 011106 432 VMNE 435 (493)
Q Consensus 432 ~l~~ 435 (493)
++.+
T Consensus 95 ~~~~ 98 (272)
T PRK02231 95 CLER 98 (272)
T ss_pred HHhc
Confidence 8873
No 291
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=38.68 E-value=1.5e+02 Score=29.67 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=26.7
Q ss_pred EEEEEC-CCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 011106 7 NIVMFP-FMAQGHIIPFLALALHIEQRHKNYSITFV 41 (493)
Q Consensus 7 ~il~~~-~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~ 41 (493)
+|++.. ..+.|-+.-.+.|+++|++ +|++|.-+
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~--rg~~Vqpf 35 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRR--RGLKVQPF 35 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHh--cCCccccc
Confidence 345544 4688999999999999999 99998655
No 292
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=38.60 E-value=3.1e+02 Score=26.34 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=21.9
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
+||+|+..+..+ +...+.|.+ +||+|..+.+.
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~--~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELRE--DNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHh--CCCcEEEEEcC
Confidence 478888655433 566688888 89998765543
No 293
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=38.60 E-value=2.4e+02 Score=24.26 Aligned_cols=103 Identities=24% Similarity=0.318 Sum_probs=63.3
Q ss_pred CcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHH
Q 011106 278 NSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLE 357 (493)
Q Consensus 278 ~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~ 357 (493)
+.+-.+++|.+. +.++.-++..|.+|+..-.... +..... ..+ ..+.+-.+
T Consensus 37 ~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~--------------~~~~~~-----~~~---~~~~~l~e 87 (178)
T PF02826_consen 37 KTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPK--------------PEEGAD-----EFG---VEYVSLDE 87 (178)
T ss_dssp SEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCH--------------HHHHHH-----HTT---EEESSHHH
T ss_pred CEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCC--------------hhhhcc-----ccc---ceeeehhh
Confidence 558888998876 5677777788888887765321 111001 111 26668889
Q ss_pred hhccCCcCceeeccCchhHHHHHHhCCcEecccccc--cchhhHHHHhhhhcee-EEeecCCCCccCHHHHHHHHH
Q 011106 358 VLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAA--EQFFNAKFLEQEMGVC-VEVARGKTCEVKHEDVVAKIE 430 (493)
Q Consensus 358 lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~G-~~~~~~~~~~~~~~~l~~ai~ 430 (493)
+|+.+++ ++. .+|.+. .+..|++.++ +|+=| +-+..++..-++.+.|.++++
T Consensus 88 ll~~aDi--v~~------------------~~plt~~T~~li~~~~l~-~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 88 LLAQADI--VSL------------------HLPLTPETRGLINAEFLA-KMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp HHHH-SE--EEE-------------------SSSSTTTTTSBSHHHHH-TSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred hcchhhh--hhh------------------hhccccccceeeeeeeee-ccccceEEEeccchhhhhhhHHHHHHh
Confidence 9999995 554 456544 5677888888 44644 455555666688888887765
No 294
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.53 E-value=54 Score=31.36 Aligned_cols=53 Identities=25% Similarity=0.303 Sum_probs=39.7
Q ss_pred cCceeeccCchhHHHHHHh----CCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 364 TCAFLSHCGWNSVLEALIH----GVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 364 v~~~I~HgG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
++++|+=||=||++.+.+. ++|++.+.+. + +|.- .....+++.+++.++++..
T Consensus 73 ~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~G------------~--lGFL------~~~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 73 CELVLVLGGDGTILRAAELARAADVPVLGVNLG------------H--VGFL------AEAEAEDLDEAVERVVDRD 129 (306)
T ss_pred CCEEEEEcCCHHHHHHHHHhccCCCcEEEEecC------------C--Ccee------ccCCHHHHHHHHHHHHcCC
Confidence 3459999999999998764 7898888531 1 3332 2357899999999999766
No 295
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=38.47 E-value=2.3e+02 Score=29.87 Aligned_cols=28 Identities=11% Similarity=0.318 Sum_probs=21.8
Q ss_pred CcCceeeccCch------hHHHHHHhCCcEeccc
Q 011106 363 ATCAFLSHCGWN------SVLEALIHGVPIIGWP 390 (493)
Q Consensus 363 ~v~~~I~HgG~g------s~~eal~~GvP~l~~P 390 (493)
..+++++|.|-| .+.+|...++|+|++.
T Consensus 76 ~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 76 KPAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 344577777744 7889999999999995
No 296
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=38.37 E-value=88 Score=29.78 Aligned_cols=134 Identities=19% Similarity=0.213 Sum_probs=68.9
Q ss_pred hhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCC
Q 011106 266 KFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKR 345 (493)
Q Consensus 266 ~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 345 (493)
+++.+++..-....+-.-++||+.. ..|+.+-++-|.+-+.++...- ......|.- + -+
T Consensus 5 ~~ileil~~Y~~~~i~Iat~gSHSa------L~Il~GAK~EGF~Ti~v~~~gr-----------~~~Y~~f~~-a---~e 63 (361)
T COG1759 5 KEILEILENYDLEDITIATIGSHSA------LQILDGAKEEGFRTIAVCQRGR-----------EKPYEKFPV-A---DE 63 (361)
T ss_pred HHHHHHHHhccccceEEEEeecchH------HHHhhhHHhcCCcEEEEEecCc-----------cchHHhhch-h---he
Confidence 4556666655434466677777764 3477888888888777765331 112222210 0 13
Q ss_pred CeEEeeccC------hHHhhccCCcCceeeccCchhHH--H--HHHhCCcEecccc----cccchhhHHHHhhhhceeEE
Q 011106 346 GLLMKNWAP------QLEVLSHRATCAFLSHCGWNSVL--E--ALIHGVPIIGWPM----AAEQFFNAKFLEQEMGVCVE 411 (493)
Q Consensus 346 nv~~~~~~p------q~~lL~~~~v~~~I~HgG~gs~~--e--al~~GvP~l~~P~----~~DQ~~na~~v~~~lG~G~~ 411 (493)
.+.+-+|.+ |..|+..-.+ ||-||....-. + .-.+-|||..-=. -.||..--..++ .+|+.
T Consensus 64 ~i~v~~f~dil~~~iqe~L~~~n~I--~IP~gSfv~Y~G~d~ie~~~~vP~fGnR~lLrwE~~~~~~~~lLe---kAgi~ 138 (361)
T COG1759 64 VIIVDKFSDILNEEIQEELRELNAI--FIPHGSFVAYVGYDGIENEFEVPMFGNRELLRWEEDRKLEYKLLE---KAGLR 138 (361)
T ss_pred EEEechhHHHhhHHHHHHHHHcCeE--EecCCceEEEecchhhhhcccCcccccHhHhhhhcchhhHHHHHH---HcCCC
Confidence 344444432 3445544444 66666542110 1 1112344433221 136766666777 56777
Q ss_pred eecCCCCccCHHHHHHH
Q 011106 412 VARGKTCEVKHEDVVAK 428 (493)
Q Consensus 412 ~~~~~~~~~~~~~l~~a 428 (493)
++. .--++++|.+-
T Consensus 139 ~P~---~~~~PeeIdr~ 152 (361)
T COG1759 139 IPK---KYKSPEEIDRP 152 (361)
T ss_pred CCc---ccCChHHcCCc
Confidence 776 44457777653
No 297
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=38.36 E-value=1.4e+02 Score=30.25 Aligned_cols=34 Identities=29% Similarity=0.300 Sum_probs=26.8
Q ss_pred HHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEE
Q 011106 102 AFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIF 143 (493)
Q Consensus 102 ~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~ 143 (493)
.+.+.+++.+ ||++|... .+..+|+.+|||++.+
T Consensus 378 e~~~~i~~~~-----pdllig~s---~~~~~A~~lgip~~~~ 411 (443)
T TIGR01862 378 EFEEILEKLK-----PDIIFSGI---KEKFVAQKLGVPYRQM 411 (443)
T ss_pred HHHHHHHhcC-----CCEEEEcC---cchhhhhhcCCCeEec
Confidence 4455566667 99999886 4678999999999876
No 298
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=38.04 E-value=1.6e+02 Score=29.84 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=25.6
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
+|||++..+++.| +|++.|++ .|++|.++..
T Consensus 3 ~kVLvlG~G~re~-----al~~~l~~--~g~~v~~~~~ 33 (435)
T PRK06395 3 MKVMLVGSGGRED-----AIARAIKR--SGAILFSVIG 33 (435)
T ss_pred eEEEEECCcHHHH-----HHHHHHHh--CCCeEEEEEC
Confidence 7899999998888 58899998 8887777743
No 299
>PLN02240 UDP-glucose 4-epimerase
Probab=37.84 E-value=48 Score=32.16 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=26.1
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVS 42 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~ 42 (493)
|+++.++|+++ ++.|.+ -.+|++.|.+ +||+|+.+.
T Consensus 1 ~~~~~~~vlIt--GatG~i--G~~l~~~L~~--~g~~V~~~~ 36 (352)
T PLN02240 1 MSLMGRTILVT--GGAGYI--GSHTVLQLLL--AGYKVVVID 36 (352)
T ss_pred CCCCCCEEEEE--CCCChH--HHHHHHHHHH--CCCEEEEEe
Confidence 67666777665 455544 3467899999 999999885
No 300
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=37.83 E-value=85 Score=31.72 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEe
Q 011106 101 PAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFS 144 (493)
Q Consensus 101 ~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~ 144 (493)
..+.+++++.+ ||++|.+.. ...+|+++|||++.+.
T Consensus 362 ~e~~~~l~~~~-----~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 362 FDIESYAKELK-----IDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred HHHHHHHHhcC-----CCEEEECch---hHHHHHHcCCCEEEec
Confidence 45666777777 999999974 5789999999998763
No 301
>PLN02929 NADH kinase
Probab=37.82 E-value=60 Score=30.90 Aligned_cols=65 Identities=14% Similarity=0.130 Sum_probs=42.7
Q ss_pred cCceeeccCchhHHHHHHh---CCcEecccccc------cchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhc
Q 011106 364 TCAFLSHCGWNSVLEALIH---GVPIIGWPMAA------EQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMN 434 (493)
Q Consensus 364 v~~~I~HgG~gs~~eal~~---GvP~l~~P~~~------DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~ 434 (493)
++++|+-||=||++.|.+. ++|+|.+=..- .++.|.-... . -+|.-. ..+.+++.+++.++++
T Consensus 65 ~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~-r-~lGfL~------~~~~~~~~~~L~~il~ 136 (301)
T PLN02929 65 VDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDAR-R-STGHLC------AATAEDFEQVLDDVLF 136 (301)
T ss_pred CCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccccc-c-Cccccc------cCCHHHHHHHHHHHHc
Confidence 3459999999999998554 68988875431 1222222211 1 245433 3578999999999997
Q ss_pred CC
Q 011106 435 ET 436 (493)
Q Consensus 435 ~~ 436 (493)
..
T Consensus 137 g~ 138 (301)
T PLN02929 137 GR 138 (301)
T ss_pred CC
Confidence 65
No 302
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=37.49 E-value=3.1e+02 Score=27.88 Aligned_cols=36 Identities=11% Similarity=0.144 Sum_probs=28.9
Q ss_pred cEEEEECC-CCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 6 ENIVMFPF-MAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 6 ~~il~~~~-~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
++|++... .+-|=..-...|++.|++ +|++|..+-+
T Consensus 4 ~~i~I~gt~s~~GKT~it~~L~~~L~~--~G~~V~~fK~ 40 (451)
T PRK01077 4 PALVIAAPASGSGKTTVTLGLMRALRR--RGLRVQPFKV 40 (451)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHh--CCCCcceeec
Confidence 45666654 567888889999999999 9999888854
No 303
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=37.42 E-value=38 Score=28.66 Aligned_cols=32 Identities=19% Similarity=0.145 Sum_probs=26.3
Q ss_pred EEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
||.++-.+..|+ ++|..|.. +||+|++++...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~--~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLAD--NGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHH--CTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHH--cCCEEEEEeccH
Confidence 567777777776 78999999 999999998764
No 304
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.31 E-value=58 Score=33.96 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=29.9
Q ss_pred CCcEEEEEC-------CCCcccHHHHH---HHHHHHHhcCCCeEEEEEeCcc
Q 011106 4 SKENIVMFP-------FMAQGHIIPFL---ALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 4 ~~~~il~~~-------~~~~GH~~p~l---~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
+++++++.+ .+-.||+.+.+ .+|+-++. +||+|.|+|...
T Consensus 3 ~~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl--~G~~v~fvtGtD 52 (558)
T COG0143 3 MMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRL--RGYEVFFLTGTD 52 (558)
T ss_pred CCCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHh--cCCeEEEEeccC
Confidence 345666665 24789999776 47777777 999999999653
No 305
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=36.73 E-value=2.4e+02 Score=28.46 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=21.2
Q ss_pred cCceeeccCch------hHHHHHHhCCcEecc
Q 011106 364 TCAFLSHCGWN------SVLEALIHGVPIIGW 389 (493)
Q Consensus 364 v~~~I~HgG~g------s~~eal~~GvP~l~~ 389 (493)
++++++|.|-| .+.+|.+.++|+|++
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 44578887744 777999999999999
No 306
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=36.16 E-value=47 Score=28.96 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=31.8
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
|++--.++.|-+. ...|.+.|++ +|++|.++.++.....+..
T Consensus 2 illgvtGsiaa~k-a~~lir~L~~--~g~~V~vv~T~~A~~fv~~ 43 (181)
T TIGR00421 2 IVVAMTGASGVIY-GIRLLEVLKE--AGVEVHLVISDWAKETIKY 43 (181)
T ss_pred EEEEEECHHHHHH-HHHHHHHHHH--CCCEEEEEECccHHHHHHH
Confidence 4444455656544 4899999999 9999999999887777653
No 307
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=35.99 E-value=45 Score=29.10 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=21.9
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
|||.++. +.|++- -.|++.... |||+||.++-.
T Consensus 1 mKIaiIg--AsG~~G--s~i~~EA~~--RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIG--ASGKAG--SRILKEALK--RGHEVTAIVRN 33 (211)
T ss_pred CeEEEEe--cCchhH--HHHHHHHHh--CCCeeEEEEeC
Confidence 3566554 333332 257888888 99999999843
No 308
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=35.95 E-value=2.6e+02 Score=23.47 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=24.8
Q ss_pred CCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 011106 12 PFMAQGHIIPFLALALHIEQRHKNYSITFV 41 (493)
Q Consensus 12 ~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~ 41 (493)
+.++-|-..-.+.|+..|.+ +|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~--~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKK--AGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHH--CCCcEEEE
Confidence 35678889999999999999 99999886
No 309
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=35.64 E-value=1e+02 Score=27.14 Aligned_cols=33 Identities=18% Similarity=0.059 Sum_probs=23.8
Q ss_pred CCCcEEEE-CCcc-hhhHHHHHHcCCceEEEechh
Q 011106 115 RPPLCIIA-DIFF-GWTCGVAKELNVFHAIFSGSG 147 (493)
Q Consensus 115 ~~pDlvI~-D~~~-~~~~~~A~~lgiP~i~~~~~~ 147 (493)
..||+||. |+.. ..+..=|..+|||.+.+.-+.
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 56999964 4333 356678899999999986543
No 310
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=35.06 E-value=61 Score=29.30 Aligned_cols=26 Identities=15% Similarity=0.223 Sum_probs=19.6
Q ss_pred cEEEEECCCCcc--cHHHHHHHHHHHHh
Q 011106 6 ENIVMFPFMAQG--HIIPFLALALHIEQ 31 (493)
Q Consensus 6 ~~il~~~~~~~G--H~~p~l~LA~~L~~ 31 (493)
+||++.-|.-+| -+||...+++.|..
T Consensus 2 ~~ILvTGF~PFgg~~~NPS~~~v~~L~~ 29 (222)
T PRK13195 2 SKVLVTGFGPYGVTPVNPAQLTAEELDG 29 (222)
T ss_pred CEEEEeeecCCCCCCcCchHHHHHhccc
Confidence 568888875444 38999999999865
No 311
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.88 E-value=68 Score=29.81 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=37.3
Q ss_pred cCceeeccCchhHHHHHH-hCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 364 TCAFLSHCGWNSVLEALI-HGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 364 v~~~I~HgG~gs~~eal~-~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
++++|+=||=||++.|++ .++|++.+-.. .+|.- ...+.+++.+++.++++..
T Consensus 42 ~d~vi~iGGDGT~L~a~~~~~~Pilgin~G--------------~lGfl------~~~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 42 ADLIIVVGGDGTVLKAAKKVGTPLVGFKAG--------------RLGFL------SSYTLEEIDRFLEDLKNWN 95 (256)
T ss_pred CCEEEEECCcHHHHHHHHHcCCCEEEEeCC--------------CCccc------cccCHHHHHHHHHHHHcCC
Confidence 345999999999999977 47777766311 12222 3457788999999888765
No 312
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.86 E-value=71 Score=29.82 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=37.3
Q ss_pred CceeeccCchhHHHHHHh-----CCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 365 CAFLSHCGWNSVLEALIH-----GVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 365 ~~~I~HgG~gs~~eal~~-----GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
+++|+=||=||++.+++. .+|++.+-..+ .+|.- ...+.+++.+++.++++++
T Consensus 41 D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G-------------~lGFL------~~~~~~~~~~~l~~i~~g~ 98 (264)
T PRK03501 41 NIIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD-------------QLGFY------CDFHIDDLDKMIQAITKEE 98 (264)
T ss_pred cEEEEECCcHHHHHHHHHhcccCCCeEEeEecCC-------------CCeEc------ccCCHHHHHHHHHHHHcCC
Confidence 359999999999999875 56666653210 12322 3467889999999998765
No 313
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=34.74 E-value=2.5e+02 Score=25.90 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCCC-eEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHhhhh
Q 011106 22 FLALALHIEQRHKN-YSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLPYNLVIHLLRASTSLK 100 (493)
Q Consensus 22 ~l~LA~~L~~~~~G-h~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (493)
+-..++.|.+ .+ .+|.+.++....+.+.........+-+.-+|.+....+++....-...- ....
T Consensus 118 ~~eA~~~l~~--~~~~~iflttGsk~L~~f~~~~~~~~r~~~RvLp~~~~~~g~~~~~iia~~G------------Pfs~ 183 (249)
T PF02571_consen 118 YEEAAELLKE--LGGGRIFLTTGSKNLPPFVPAPLPGERLFARVLPTPESALGFPPKNIIAMQG------------PFSK 183 (249)
T ss_pred HHHHHHHHhh--cCCCCEEEeCchhhHHHHhhcccCCCEEEEEECCCccccCCCChhhEEEEeC------------CCCH
Confidence 4566777766 66 6677777666666664311111455555566542212222111000000 1122
Q ss_pred HHHHHHHHHhhcCCCCCcEEEECCcc---h-hhHHHHHHcCCceEEEe
Q 011106 101 PAFKEVISSLINQGRPPLCIIADIFF---G-WTCGVAKELNVFHAIFS 144 (493)
Q Consensus 101 ~~l~~~l~~~~~~~~~pDlvI~D~~~---~-~~~~~A~~lgiP~i~~~ 144 (493)
..-.+++++.. .|++|+=..- . .=..+|+.+|||++.+.
T Consensus 184 e~n~al~~~~~-----i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~ 226 (249)
T PF02571_consen 184 ELNRALFRQYG-----IDVLVTKESGGSGFDEKIEAARELGIPVIVIK 226 (249)
T ss_pred HHHHHHHHHcC-----CCEEEEcCCCchhhHHHHHHHHHcCCeEEEEe
Confidence 34556778888 9999986432 2 22369999999999984
No 314
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=34.62 E-value=1.8e+02 Score=29.29 Aligned_cols=32 Identities=9% Similarity=0.166 Sum_probs=24.9
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
.|+.+...+.. .+++++.|.+ -|-+|..+.+.
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~e--lGmevv~~~t~ 317 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLE--SGADVPYVGTA 317 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHH--CCCEEEEEecC
Confidence 46777776655 8889999999 99998887655
No 315
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=34.55 E-value=86 Score=26.66 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=24.9
Q ss_pred EEEEeccCCcCCCHHHHHHHHHHHHhCCC
Q 011106 280 VLYISFGSMNTISASQMMQLAMALEASGK 308 (493)
Q Consensus 280 ~V~vs~GS~~~~~~~~~~~i~~al~~~~~ 308 (493)
.+|+++||-...+...++..+.++.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 69999999888777888889999998765
No 316
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=34.39 E-value=1.9e+02 Score=30.54 Aligned_cols=28 Identities=14% Similarity=0.394 Sum_probs=22.4
Q ss_pred CcCceeeccCch------hHHHHHHhCCcEeccc
Q 011106 363 ATCAFLSHCGWN------SVLEALIHGVPIIGWP 390 (493)
Q Consensus 363 ~v~~~I~HgG~g------s~~eal~~GvP~l~~P 390 (493)
..+++++|.|-| .+.+|...++|+|++-
T Consensus 78 ~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 78 KPGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 345588888855 6789999999999984
No 317
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=34.34 E-value=1.2e+02 Score=27.20 Aligned_cols=44 Identities=11% Similarity=0.060 Sum_probs=33.9
Q ss_pred EEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
-+++...|+.|=..-+++++..-.+ +|+.|.+++.....+.+.+
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~--~g~~~~y~s~e~~~~~l~~ 61 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLK--NGEKAMYISLEEREERILG 61 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCCCHHHHHH
Confidence 3455556799998889999888778 8999999998766555444
No 318
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=34.31 E-value=59 Score=28.26 Aligned_cols=43 Identities=12% Similarity=0.120 Sum_probs=32.4
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhh
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLK 51 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~ 51 (493)
+||++.-.++. ...-...+.+.|++ +|++|.++.++.....+.
T Consensus 1 k~I~lgvtGs~-~a~~~~~ll~~L~~--~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 1 KKILLAVTGSI-AAYKAADLTSQLTK--LGYDVTVLMTQAATQFIT 43 (177)
T ss_pred CEEEEEEcCHH-HHHHHHHHHHHHHH--CCCEEEEEEChHHHhhcc
Confidence 35666555544 45567799999999 999999999887766655
No 319
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=34.21 E-value=38 Score=32.31 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=30.3
Q ss_pred hhccCCcCceeeccCchhHHHHHH----hCCcEeccccccc
Q 011106 358 VLSHRATCAFLSHCGWNSVLEALI----HGVPIIGWPMAAE 394 (493)
Q Consensus 358 lL~~~~v~~~I~HgG~gs~~eal~----~GvP~l~~P~~~D 394 (493)
-|..-+++++|.=||.+|..-|.. +++|+|.+|-+.|
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTID 126 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTID 126 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccccc
Confidence 455567889999999999876643 7999999998776
No 320
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=34.20 E-value=2.4e+02 Score=27.87 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=26.6
Q ss_pred CcEEEEEC-CCCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 5 KENIVMFP-FMAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 5 ~~~il~~~-~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
.++|+++- .|..|. .+|..|.+ +||+|+++..
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~--~G~~V~~~d~ 130 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTL--SGYQVRILEQ 130 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHH--CCCeEEEeCC
Confidence 36899886 787776 68999999 9999999974
No 321
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=33.81 E-value=1.3e+02 Score=30.67 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=33.7
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhh
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLK 51 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~ 51 (493)
+++.--|+.|=..-+++++..+.+ +|+.|.|++.+...+.+.
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~--~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAK--NQMKVLYVSGEESLQQIK 138 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh--cCCcEEEEECcCCHHHHH
Confidence 455556899999999999999999 899999999876554443
No 322
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=33.38 E-value=86 Score=27.01 Aligned_cols=42 Identities=10% Similarity=-0.063 Sum_probs=33.9
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhh
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLK 51 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~ 51 (493)
+++.-.|+.|=..-.++++....+ .|..|.|++.....+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~--~g~~v~~~s~e~~~~~~~ 43 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA--RGEPGLYVTLEESPEELI 43 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH--CCCcEEEEECCCCHHHHH
Confidence 466677899999999999998888 999999999876554443
No 323
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=33.36 E-value=40 Score=34.37 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=0.0
Q ss_pred cEEEEECCCCcccHHHHH------------HHHHHHHhcCCCeEEEEEeCc
Q 011106 6 ENIVMFPFMAQGHIIPFL------------ALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l------------~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
+||++...|+.=.+.|.. +||+++.. +|++||+++.+
T Consensus 257 kkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~--~GA~VtlI~Gp 305 (475)
T PRK13982 257 RRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAA--AGAEVTLISGP 305 (475)
T ss_pred CEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHH--CCCcEEEEeCC
No 324
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.32 E-value=1.2e+02 Score=27.23 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=29.0
Q ss_pred CCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc-chhhhhc
Q 011106 14 MAQGHIIPFLALALHIEQRHKNYSITFVSTPL-NIKKLKS 52 (493)
Q Consensus 14 ~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~-~~~~v~~ 52 (493)
-+.|-..=+.+++..+.. .||+|++++++. .++.+..
T Consensus 37 ~~tGKSvLsqr~~YG~L~--~g~~v~yvsTe~T~refi~q 74 (235)
T COG2874 37 NGTGKSVLSQRFAYGFLM--NGYRVTYVSTELTVREFIKQ 74 (235)
T ss_pred CCccHHHHHHHHHHHHHh--CCceEEEEEechhHHHHHHH
Confidence 377888888999999999 999999999875 3344433
No 325
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.23 E-value=84 Score=29.89 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=38.6
Q ss_pred CceeeccCchhHHHHHHh----CCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 365 CAFLSHCGWNSVLEALIH----GVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 365 ~~~I~HgG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
+.+|+=||=||+++++.. ++|++.+... + +|. + ...+.+++.++|.++++++
T Consensus 64 d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G------------~--lGF-l-----~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 64 DLVIVVGGDGSLLGAARALARHNVPVLGINRG------------R--LGF-L-----TDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred CEEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC------------c--ccc-c-----ccCCHHHHHHHHHHHHcCC
Confidence 359999999999999763 6788887541 2 231 1 2467899999999999765
No 326
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=33.22 E-value=1.5e+02 Score=22.57 Aligned_cols=65 Identities=11% Similarity=-0.011 Sum_probs=43.4
Q ss_pred ccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHH
Q 011106 393 AEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMD 472 (493)
Q Consensus 393 ~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~ 472 (493)
.|+..|....+ ++|.+.+ ..+++.++.+++.+++.... .=.+.+-+.+. ..|+ -+.
T Consensus 20 ~~~~gWr~LAe-~lg~~~~------fr~S~~el~~cslkvl~p~g------SPsk~LL~~~~-------~rg~----Tv~ 75 (97)
T cd08783 20 ADGKGWRKLAE-LAGSRGR------FRLSCLDLEQCSLKVLEPEG------SPSRSLLKLLG-------ERGC----TVT 75 (97)
T ss_pred CccCCHHHHHH-HHccCCc------cccCHHHHHHHHHHHhcCCC------CchHHHHHHHH-------HcCC----cHH
Confidence 45666777666 4377764 46799999999999998651 22566666665 5555 456
Q ss_pred HHHHHHHhh
Q 011106 473 DFLSAAISM 481 (493)
Q Consensus 473 ~~~~~~~~~ 481 (493)
++++.++.|
T Consensus 76 ~Ll~~L~~M 84 (97)
T cd08783 76 ELSEFLQAM 84 (97)
T ss_pred HHHHHHHHh
Confidence 666666655
No 327
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=33.18 E-value=77 Score=28.45 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=20.4
Q ss_pred cEEEEECCCCcc--cHHHHHHHHHHHHh
Q 011106 6 ENIVMFPFMAQG--HIIPFLALALHIEQ 31 (493)
Q Consensus 6 ~~il~~~~~~~G--H~~p~l~LA~~L~~ 31 (493)
++|++..|.-+| ..||...+++.|..
T Consensus 2 ~~ILvTGF~PF~~~~~NPS~~~~~~L~~ 29 (211)
T PRK13196 2 PTLLLTGFEPFHTHPVNPSAQAAQALNG 29 (211)
T ss_pred CEEEEEeecCCCCCCCCcHHHHHHhccc
Confidence 678888875334 48999999999966
No 328
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=33.02 E-value=55 Score=29.13 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=18.0
Q ss_pred cEEEEECCCCcc--cHHHHHHHHHHHHh
Q 011106 6 ENIVMFPFMAQG--HIIPFLALALHIEQ 31 (493)
Q Consensus 6 ~~il~~~~~~~G--H~~p~l~LA~~L~~ 31 (493)
|||++..|+-+| -.||...+++.|..
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~ 28 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLPG 28 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHTT
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcCC
Confidence 578888765444 37999999999965
No 329
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=32.70 E-value=75 Score=31.72 Aligned_cols=46 Identities=15% Similarity=0.052 Sum_probs=37.0
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
+.+||++.-.++. ...-...|.+.|.+ .|++|.++.++.....+..
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~--~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRK--AGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHh--CCCEEEEEECHhHHHHHhH
Confidence 4568888777766 55678999999999 9999999998877776654
No 330
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=32.55 E-value=90 Score=29.45 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 011106 291 ISASQMMQLAMALEASGKNFIWVVRPP 317 (493)
Q Consensus 291 ~~~~~~~~i~~al~~~~~~vi~~~~~~ 317 (493)
.+.+....+.+|+.+...+.||.+.+.
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG 72 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGG 72 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCc
Confidence 345567779999999999999999876
No 331
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=32.47 E-value=2.5e+02 Score=27.74 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEcCC
Q 011106 292 SASQMMQLAMALEASGKNFIWVVRPP 317 (493)
Q Consensus 292 ~~~~~~~i~~al~~~~~~vi~~~~~~ 317 (493)
-|.+++.++++|.+.|+.|.+.+..+
T Consensus 9 ~p~~~~~la~~L~~~G~~v~~~~~~~ 34 (396)
T cd03818 9 FPGQFRHLAPALAAQGHEVVFLTEPN 34 (396)
T ss_pred CchhHHHHHHHHHHCCCEEEEEecCC
Confidence 45667889999999999988877654
No 332
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=32.46 E-value=4.1e+02 Score=24.59 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=30.7
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
+++.-.|+.|=..-++++|...++ +|..|.|++.+.
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~--~Ge~vlyis~Ee 74 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQAS--RGNPVLFVTVES 74 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh--CCCcEEEEEecC
Confidence 455557899999999999998888 899999999764
No 333
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=32.35 E-value=76 Score=30.67 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=33.0
Q ss_pred HHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcch-------hhH---HHHHHcCCceEEE
Q 011106 92 LLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFG-------WTC---GVAKELNVFHAIF 143 (493)
Q Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~-------~~~---~~A~~lgiP~i~~ 143 (493)
|..-.+.....+.+.++..+ ||++|+-+.+- |+. .+.+.++||.++-
T Consensus 61 f~en~eea~~~i~~mv~~~~-----pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 61 FNENKEEALKKILEMVKKLK-----PDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred hhhCHHHHHHHHHHHHHhcC-----CCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 33444556677888888888 99999986542 222 2557899999874
No 334
>PRK11823 DNA repair protein RadA; Provisional
Probab=32.22 E-value=1.2e+02 Score=30.89 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=33.7
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhh
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKL 50 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v 50 (493)
+++.--|+.|=..-++++|..+.+ +|+.|.+++.+...+.+
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~--~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAA--AGGKVLYVSGEESASQI 123 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEccccHHHH
Confidence 455557899999999999999998 89999999987655544
No 335
>PRK08322 acetolactate synthase; Reviewed
Probab=32.09 E-value=1.2e+02 Score=31.86 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=21.9
Q ss_pred cCceeeccCch------hHHHHHHhCCcEeccc
Q 011106 364 TCAFLSHCGWN------SVLEALIHGVPIIGWP 390 (493)
Q Consensus 364 v~~~I~HgG~g------s~~eal~~GvP~l~~P 390 (493)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 44588887744 7889999999999985
No 336
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=32.02 E-value=1e+02 Score=30.55 Aligned_cols=70 Identities=17% Similarity=0.188 Sum_probs=46.0
Q ss_pred cCceeeccCchhHHHHHHh------------C-----CcEecccccccchhhHHHHhhhhceeEEeec-CCCCccCHHHH
Q 011106 364 TCAFLSHCGWNSVLEALIH------------G-----VPIIGWPMAAEQFFNAKFLEQEMGVCVEVAR-GKTCEVKHEDV 425 (493)
Q Consensus 364 v~~~I~HgG~gs~~eal~~------------G-----vP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~-~~~~~~~~~~l 425 (493)
-..++|.||..+.+.|+.. | .|+|.++-.. |+-+ .+....||+|+..-+ +++..++.++|
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~-~Kaa~~lGlg~~~I~~~~~~~md~~~L 181 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSI-EKAARILGLGVRKIPTDEDGRMDIEAL 181 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THH-HHHHHHTTSEEEEE-BBTTSSB-HHHH
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHH-HHhcceeeeEEEEecCCcchhhhHHHh
Confidence 3478999998888777533 3 4566665333 3444 444457799976655 45678999999
Q ss_pred HHHHHHHhcC
Q 011106 426 VAKIELVMNE 435 (493)
Q Consensus 426 ~~ai~~~l~~ 435 (493)
.++|.+...+
T Consensus 182 ~~~l~~~~~~ 191 (373)
T PF00282_consen 182 EKALEKDIAN 191 (373)
T ss_dssp HHHHHHHHHT
T ss_pred hhhhcccccc
Confidence 9999877654
No 337
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=31.89 E-value=2.7e+02 Score=29.52 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=22.4
Q ss_pred CcCceeeccCch------hHHHHHHhCCcEeccc
Q 011106 363 ATCAFLSHCGWN------SVLEALIHGVPIIGWP 390 (493)
Q Consensus 363 ~v~~~I~HgG~g------s~~eal~~GvP~l~~P 390 (493)
+++++++|.|-| .+.+|...++|||++.
T Consensus 68 ~~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 68 RMGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CCEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 345588888844 7778999999999996
No 338
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=31.77 E-value=81 Score=32.26 Aligned_cols=52 Identities=13% Similarity=0.168 Sum_probs=38.8
Q ss_pred cCceeeccCchhHHHHHHh----CCcEecccccccchhhHHHHhhhhc-eeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 364 TCAFLSHCGWNSVLEALIH----GVPIIGWPMAAEQFFNAKFLEQEMG-VCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 364 v~~~I~HgG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG-~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
++++|+=||=||++.|.+. ++|++.+- . | +|. + ..++.+++.++|.++++++
T Consensus 263 ~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN--------------~-G~LGF-L-----t~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 263 VDLVITLGGDGTVLWAASMFKGPVPPVVPFS--------------M-GSLGF-M-----TPFHSEQYRDCLDAILKGP 319 (508)
T ss_pred CCEEEEECCcHHHHHHHHHhccCCCcEEEEe--------------C-CCcce-e-----cccCHHHHHHHHHHHHcCC
Confidence 4469999999999999774 56777662 1 2 443 2 2468899999999999866
No 339
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=31.45 E-value=3.2e+02 Score=23.02 Aligned_cols=137 Identities=22% Similarity=0.284 Sum_probs=67.8
Q ss_pred EEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhh
Q 011106 280 VLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVL 359 (493)
Q Consensus 280 ~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL 359 (493)
.|-|-+||.. +.....++...|+..+..+-+.+.+-+ ..|+.+.+ ++...+-
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saH------------R~p~~l~~-------------~~~~~~~- 53 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAH------------RTPERLLE-------------FVKEYEA- 53 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TT------------TSHHHHHH-------------HHHHTTT-
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEecc------------CCHHHHHH-------------HHHHhcc-
Confidence 4556667665 677788888899988876655554432 13333321 1111100
Q ss_pred ccCCcCceeeccCch----hHHHHHHhCCcEecccccccchhhHHHHhhhh----ceeEEeecCCCCccCHHHHHHHHHH
Q 011106 360 SHRATCAFLSHCGWN----SVLEALIHGVPIIGWPMAAEQFFNAKFLEQEM----GVCVEVARGKTCEVKHEDVVAKIEL 431 (493)
Q Consensus 360 ~~~~v~~~I~HgG~g----s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~l----G~G~~~~~~~~~~~~~~~l~~ai~~ 431 (493)
..++ .||.=.|.. ++..++ .-.|+|.+|...++.....-+...+ |+++..-. -+...+..-++- +
T Consensus 54 ~~~~--viIa~AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~-i~~~~nAA~~A~---~ 126 (150)
T PF00731_consen 54 RGAD--VIIAVAGMSAALPGVVASL-TTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVG-INNGFNAALLAA---R 126 (150)
T ss_dssp TTES--EEEEEEESS--HHHHHHHH-SSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-S-STHHHHHHHHHH---H
T ss_pred CCCE--EEEEECCCcccchhhheec-cCCCEEEeecCcccccCcccHHHHHhccCCCCceEEE-ccCchHHHHHHH---H
Confidence 1223 377777754 333333 3799999999877554333211111 44433221 111223333333 3
Q ss_pred Hh--cCCchhHHHHHHHHHHHHHHHH
Q 011106 432 VM--NETDKGKEIRRKVSEVREMIKN 455 (493)
Q Consensus 432 ~l--~~~~~~~~~~~~a~~l~~~~~~ 455 (493)
+| .|+ +++++.+..++.+++
T Consensus 127 ILa~~d~----~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 127 ILALKDP----ELREKLRAYREKMKE 148 (150)
T ss_dssp HHHTT-H----HHHHHHHHHHHHHHH
T ss_pred HHhcCCH----HHHHHHHHHHHHHHc
Confidence 44 455 788888888888763
No 340
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=31.37 E-value=4.4e+02 Score=24.64 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=28.7
Q ss_pred eccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecc
Q 011106 351 NWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGW 389 (493)
Q Consensus 351 ~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~ 389 (493)
++=|+-+.|+.++- -++|--..|.+.||.+.|+|+-+.
T Consensus 234 g~NPY~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 234 GYNPYIDMLAAADY-IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCchHHHHhhcce-EEEecchhhhhHHHhccCCCeEEE
Confidence 34588888988774 344555678899999999998664
No 341
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=31.19 E-value=3.3e+02 Score=27.26 Aligned_cols=34 Identities=12% Similarity=0.010 Sum_probs=26.4
Q ss_pred HHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEE
Q 011106 102 AFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIF 143 (493)
Q Consensus 102 ~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~ 143 (493)
.+.+.++..+ ||++|.... ...+|+.+|||++..
T Consensus 347 e~~~~i~~~~-----pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 347 ELKKLLKEKK-----ADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHhhcC-----CCEEEECCc---chhhHHhcCCCEEEc
Confidence 4556666667 999999953 468899999999854
No 342
>COG3245 CycB Cytochrome c5 [Energy production and conversion]
Probab=31.14 E-value=35 Score=26.98 Aligned_cols=52 Identities=17% Similarity=0.276 Sum_probs=38.7
Q ss_pred HHhCCcEecccccccchhhHHHHhhhhceeEEee-----------cCCCCccCHHHHHHHHHHHh
Q 011106 380 LIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVA-----------RGKTCEVKHEDVVAKIELVM 433 (493)
Q Consensus 380 l~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~-----------~~~~~~~~~~~l~~ai~~~l 433 (493)
+.|+.++...|..+|.-.|+-|+. + |.-.-++ ++.-...+.|+++.+|+-+.
T Consensus 60 ~CHa~~~~GAPk~GdkAaW~PRia-q-G~dtL~~hai~GfnAMPpkG~ca~cSdDe~kAaId~M~ 122 (126)
T COG3245 60 ACHAAGLPGAPKTGDKAAWAPRIA-Q-GKDTLLDHAINGFNAMPPKGGCADCSDDEVKAAIDFMA 122 (126)
T ss_pred HhccCCCCCCCCCCchhhhhhHHH-h-chHHHHHHHhccccCCCCCCCcCCCCHHHHHHHHHHHH
Confidence 567888999999999999999998 5 5433322 23344588999999887543
No 343
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=30.91 E-value=4.2e+02 Score=25.01 Aligned_cols=40 Identities=5% Similarity=-0.006 Sum_probs=28.5
Q ss_pred CCCcEEEEECCC-CcccHH---HHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 3 QSKENIVMFPFM-AQGHII---PFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 3 ~~~~~il~~~~~-~~GH~~---p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
+++++|++++.+ +.=|-. -...+.++|.+ +||+|.++...
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~--~g~~v~~i~~~ 45 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALRE--AGYDAHPIDPG 45 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHH--CCCEEEEEecC
Confidence 345688888843 222333 45789999999 99999998644
No 344
>PRK13768 GTPase; Provisional
Probab=30.87 E-value=1.5e+02 Score=27.43 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=31.5
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
+-+++...++.|=..-...++..|.. +|++|.++...
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~--~g~~v~~i~~D 39 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEE--QGYDVAIVNLD 39 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHh--cCCceEEEECC
Confidence 45667777899999999999999999 99999998654
No 345
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=30.83 E-value=72 Score=29.70 Aligned_cols=39 Identities=13% Similarity=0.223 Sum_probs=26.1
Q ss_pred cEEEEeccCCcCCC-HHHHHHHHHHHHh--CCCcEEEEEcCC
Q 011106 279 SVLYISFGSMNTIS-ASQMMQLAMALEA--SGKNFIWVVRPP 317 (493)
Q Consensus 279 ~~V~vs~GS~~~~~-~~~~~~i~~al~~--~~~~vi~~~~~~ 317 (493)
.+|.|||||..... ...+..+.+.++. .+..|-|+.-++
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 48999999987644 4478888888887 688999997554
No 346
>COG1422 Predicted membrane protein [Function unknown]
Probab=30.55 E-value=1.5e+02 Score=26.14 Aligned_cols=85 Identities=11% Similarity=0.180 Sum_probs=51.5
Q ss_pred hHHHHHHhCCcEecccccccchhh-HHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 011106 375 SVLEALIHGVPIIGWPMAAEQFFN-AKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMI 453 (493)
Q Consensus 375 s~~eal~~GvP~l~~P~~~DQ~~n-a~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~ 453 (493)
|+.++++-+.-.+..|+..=++.. .-.|. | .--.-...-++..+-|.++-++++++++++++++
T Consensus 24 ~~~~~i~~~ln~~f~P~i~~~~p~lvilV~---a------------vi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~ 88 (201)
T COG1422 24 SIRDGIGGALNVVFGPLLSPLPPHLVILVA---A------------VITGLYITILQKLLIDQEKMKELQKMMKEFQKEF 88 (201)
T ss_pred HHHHHHHHHHHHHHhhhccccccHHHHHHH---H------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 566666666666666654433332 22222 1 1122334456677777777778999999999999
Q ss_pred HHhhhccccCCCChHHHHHHHHHHHHh
Q 011106 454 KNAMKDEEGCRGSSVKAMDDFLSAAIS 480 (493)
Q Consensus 454 ~~~~~~~~~~~g~~~~~~~~~~~~~~~ 480 (493)
++|- .+|. ...++++-+.=.+
T Consensus 89 ~eA~----~~~d--~~~lkkLq~~qme 109 (201)
T COG1422 89 REAQ----ESGD--MKKLKKLQEKQME 109 (201)
T ss_pred HHHH----HhCC--HHHHHHHHHHHHH
Confidence 9886 4443 4566666554333
No 347
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=30.51 E-value=2.5e+02 Score=28.16 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=25.2
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLN 46 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~ 46 (493)
+||+++-.+..+| .|++++++ -|+.+++++.+.+
T Consensus 1 ~kiliiG~G~~~~-----~l~~~~~~--~~~~~~~~~~~~~ 34 (423)
T TIGR00877 1 MKVLVIGNGGREH-----ALAWKLAQ--SPLVKYVYVAPGN 34 (423)
T ss_pred CEEEEECCChHHH-----HHHHHHHh--CCCccEEEEECCC
Confidence 4788888777765 68888888 7887777765543
No 348
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=30.34 E-value=96 Score=25.18 Aligned_cols=37 Identities=16% Similarity=0.371 Sum_probs=27.5
Q ss_pred cEEEEeccCCcCCCHHHHHHHHHHHHh--CCCcEEEEEc
Q 011106 279 SVLYISFGSMNTISASQMMQLAMALEA--SGKNFIWVVR 315 (493)
Q Consensus 279 ~~V~vs~GS~~~~~~~~~~~i~~al~~--~~~~vi~~~~ 315 (493)
.+|+++|||......+.+..+.+.+++ .+..|-|..-
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~aft 40 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFT 40 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 589999999976455667778888865 4567777764
No 349
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=30.22 E-value=2.8e+02 Score=26.78 Aligned_cols=33 Identities=15% Similarity=0.043 Sum_probs=23.9
Q ss_pred CCCcEEE-ECCcc-hhhHHHHHHcCCceEEEechh
Q 011106 115 RPPLCII-ADIFF-GWTCGVAKELNVFHAIFSGSG 147 (493)
Q Consensus 115 ~~pDlvI-~D~~~-~~~~~~A~~lgiP~i~~~~~~ 147 (493)
+.||+|| .|+.- ..+..=|.++|||.|.+.-+.
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 3599886 45443 367778999999999986443
No 350
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=30.03 E-value=1e+02 Score=29.04 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=33.9
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
.++|+++-.+..|. .+|+.|++ +||.|.++.-.......+.
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~--~g~~v~i~g~d~~~~~~~~ 43 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKE--AGLVVRIIGRDRSAATLKA 43 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHH--cCCeEEEEeecCcHHHHHH
Confidence 46899999888887 57999999 9999999987777665555
No 351
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=29.94 E-value=1.7e+02 Score=25.69 Aligned_cols=25 Identities=16% Similarity=0.208 Sum_probs=18.1
Q ss_pred EEEEECC-CCcc-cHHHHHHHHHHHHh
Q 011106 7 NIVMFPF-MAQG-HIIPFLALALHIEQ 31 (493)
Q Consensus 7 ~il~~~~-~~~G-H~~p~l~LA~~L~~ 31 (493)
|||+.-| |+.| .+||....++.|-.
T Consensus 2 kvLvTGFePF~~~~~NPs~e~vk~L~~ 28 (207)
T COG2039 2 KVLVTGFEPFGGEPINPSWEAVKELNG 28 (207)
T ss_pred eEEEEeccCCCCCCCChHHHHHHhcCc
Confidence 5777665 3444 47999999999976
No 352
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=29.90 E-value=59 Score=31.54 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=30.2
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
+||+|+-.+..|. .+|..|.+ +||+|+++.-....+.+.+
T Consensus 3 mkI~IiG~G~mG~-----~~A~~L~~--~G~~V~~~~r~~~~~~~~~ 42 (341)
T PRK08229 3 ARICVLGAGSIGC-----YLGGRLAA--AGADVTLIGRARIGDELRA 42 (341)
T ss_pred ceEEEECCCHHHH-----HHHHHHHh--cCCcEEEEecHHHHHHHHh
Confidence 6899998888875 57889999 9999999985433334333
No 353
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=29.68 E-value=75 Score=32.98 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=26.7
Q ss_pred HHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEe
Q 011106 102 AFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFS 144 (493)
Q Consensus 102 ~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~ 144 (493)
.+.+.|++.+ ||+||.+. +...+|+.+|||++.++
T Consensus 365 ei~~~I~~~~-----pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 365 EVGDMIARVE-----PSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHhcC-----CCEEEECc---hhhHHHHHhCCCEEEee
Confidence 4455556655 99999997 45667899999998875
No 354
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=29.64 E-value=77 Score=28.93 Aligned_cols=36 Identities=6% Similarity=0.236 Sum_probs=29.3
Q ss_pred CcccH-HHHHHHHHHHHhcCC--CeEEEEEeCccchhhhhc
Q 011106 15 AQGHI-IPFLALALHIEQRHK--NYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 15 ~~GH~-~p~l~LA~~L~~~~~--Gh~Vt~~~~~~~~~~v~~ 52 (493)
+.|+. .-.+.|++.|++ . ||+|.++.++.....+..
T Consensus 8 Gs~~~~~~~~~l~~~L~~--~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 8 GAGHLLVESFQVMKELKR--EIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred CccHhHHHHHHHHHHHHh--hcCCCeEEEEEChhHHhHHhh
Confidence 33444 689999999999 8 999999998877777665
No 355
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.53 E-value=2.6e+02 Score=23.86 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=53.0
Q ss_pred hhHHHHHHhCCcEeccccc-ccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 011106 374 NSVLEALIHGVPIIGWPMA-AEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREM 452 (493)
Q Consensus 374 gs~~eal~~GvP~l~~P~~-~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~ 452 (493)
-|+.|--..|.=-+.==-+ .=+-.|+++.++- |.=..+.- ...+.++|.++..+-|+|. +.+++++.+.++...
T Consensus 88 ~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~~rF-gfPfI~aV---kg~~k~~Il~a~~~Rl~n~-~e~E~~tAl~eI~rI 162 (176)
T COG3195 88 ESTSEQASAGLDRLSPEEFARFTELNAAYVERF-GFPFIIAV---KGNTKDTILAAFERRLDND-REQEFATALAEIERI 162 (176)
T ss_pred hhHHHHHhcCcccCCHHHHHHHHHHHHHHHHhc-CCceEEee---cCCCHHHHHHHHHHHhccc-HHHHHHHHHHHHHHH
Confidence 4666777777654431111 1155799999966 88777776 7789999999999999988 555677777776665
Q ss_pred HH
Q 011106 453 IK 454 (493)
Q Consensus 453 ~~ 454 (493)
.+
T Consensus 163 A~ 164 (176)
T COG3195 163 AL 164 (176)
T ss_pred HH
Confidence 54
No 356
>PRK00784 cobyric acid synthase; Provisional
Probab=29.51 E-value=4.9e+02 Score=26.84 Aligned_cols=36 Identities=8% Similarity=0.153 Sum_probs=28.9
Q ss_pred cEEEEECC-CCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 6 ENIVMFPF-MAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 6 ~~il~~~~-~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
++|++... ..-|=..-...|++.|++ +|++|..+=+
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~--~G~~v~~~Kp 39 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILAR--RGYRVAPFKA 39 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHH--CCCeEecccc
Confidence 45666644 568999999999999999 9999887743
No 357
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=29.33 E-value=1.5e+02 Score=28.67 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=27.6
Q ss_pred CCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 12 PFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 12 ~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
+.++.|-+--.+.||+.|++ +|..+-+++=.
T Consensus 56 tvGGtGKTP~vi~la~~l~~--rG~~~gvvSRG 86 (336)
T COG1663 56 TVGGTGKTPVVIWLAEALQA--RGVRVGVVSRG 86 (336)
T ss_pred EECCCCcCHHHHHHHHHHHh--cCCeeEEEecC
Confidence 46899999889999999999 99999999843
No 358
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=29.30 E-value=1.2e+02 Score=24.87 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=34.9
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLN 46 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~ 46 (493)
+.+|++-+..+-+|-.----++..|.. .|++|........
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~--~GfeVi~LG~~v~ 40 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTN--AGFNVVNLGVLSP 40 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHH--CCCEEEECCCCCC
Confidence 358999999999999999999999999 9999999876443
No 359
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.30 E-value=80 Score=33.28 Aligned_cols=53 Identities=25% Similarity=0.328 Sum_probs=39.4
Q ss_pred cCceeeccCchhHHHHHHh----CCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 364 TCAFLSHCGWNSVLEALIH----GVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 364 v~~~I~HgG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
++++|+-||=||++.+.+. ++|++.+-+. + +|- + ...+.+++.+++.++++.+
T Consensus 349 ~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G------------~--lGF-L-----~~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 349 ISHIISIGGDGTVLRASKLVNGEEIPIICINMG------------T--VGF-L-----TEFSKEEIFKAIDSIISGE 405 (569)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCC------------C--CCc-C-----cccCHHHHHHHHHHHHcCC
Confidence 4569999999999999774 7788887431 1 222 1 3467899999999999765
No 360
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.27 E-value=74 Score=29.94 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=37.1
Q ss_pred cCceeeccCchhHHHHHHh---CCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 364 TCAFLSHCGWNSVLEALIH---GVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 364 v~~~I~HgG~gs~~eal~~---GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
.+++|.-||=||+++++.. ++|++.++.. . +|.- ..++++++.+++.+++.+.
T Consensus 58 ~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G------------~--lGFl------~~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 58 VDFIIAIGGDGTILRIEHKTKKDIPILGINMG------------T--LGFL------TEVEPEETFFALSRLLEGD 113 (277)
T ss_pred CCEEEEEeCcHHHHHHHHhcCCCCeEEEEeCC------------C--CCcc------ccCCHHHHHHHHHHHHcCC
Confidence 3459999999999999853 5688888642 1 1111 2356788888888888765
No 361
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=29.03 E-value=3.2e+02 Score=27.65 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=34.0
Q ss_pred EEEEECCCCcccHHHHHHHHHHHH-hcCCCeEEEEEeCccchhh
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIE-QRHKNYSITFVSTPLNIKK 49 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~-~~~~Gh~Vt~~~~~~~~~~ 49 (493)
-++++..++.|=..-...||..|. + +|+.|.+++...++..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~--~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKK--QGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh--CCCeEEEEeccccchH
Confidence 456666789999999999999987 6 7999999998766543
No 362
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=28.94 E-value=3.7e+02 Score=30.39 Aligned_cols=36 Identities=17% Similarity=0.013 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEe
Q 011106 101 PAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFS 144 (493)
Q Consensus 101 ~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~ 144 (493)
..+.+.+++.+ ||++|.... ...+|+++|||++-..
T Consensus 379 ~el~~~i~~~~-----pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 379 AGLLRVMREKM-----PDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred HHHHHHHHhcC-----CCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 35566777777 999999753 5778999999999754
No 363
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=28.93 E-value=1.3e+02 Score=22.32 Aligned_cols=59 Identities=8% Similarity=-0.036 Sum_probs=37.3
Q ss_pred CcEEEEECCCCc--ccHHHHHHHHHHHHhcCCCeEEEEEeC-ccchhhhhccCCCCCCceEEeccC
Q 011106 5 KENIVMFPFMAQ--GHIIPFLALALHIEQRHKNYSITFVST-PLNIKKLKSSLPPNSSIDLHEIPF 67 (493)
Q Consensus 5 ~~~il~~~~~~~--GH~~p~l~LA~~L~~~~~Gh~Vt~~~~-~~~~~~v~~~~~~~~~i~~~~i~~ 67 (493)
|-+++++|.... .+..-...|+..|.. .|..|.+-.. ......+..... .++.|.-+-.
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~--~g~~v~~d~~~~~l~k~i~~a~~--~g~~~~iiiG 62 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQA--AGVDVLLDDRNERPGVKFADADL--IGIPYRIVVG 62 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHH--CCCEEEEECCCCCcccchhHHHh--cCCCEEEEEC
Confidence 346888887653 566778999999999 9999988543 233333333222 4555555443
No 364
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=28.34 E-value=81 Score=27.37 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=35.7
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
...++|+-.++.|=..=..+++..+.. +|+.|.|++.+.....+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~--~g~~v~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR--KGYSVLFITASDLLDELKQ 92 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEHHHHHHHHHC
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc--CCcceeEeecCceeccccc
Confidence 457888888888888889999999999 9999999998766666654
No 365
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=28.33 E-value=87 Score=27.12 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=27.4
Q ss_pred ccHHH-HHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 17 GHIIP-FLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 17 GH~~p-~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
||... .+.+.+.|.++ +||+|.++.++...+.++.
T Consensus 10 g~~l~e~v~~l~~L~~~-~g~eV~vv~S~~A~~vi~~ 45 (174)
T TIGR02699 10 GDKLPETYSIMKDVKNR-YGDEIDVFLSKAGEQVVKW 45 (174)
T ss_pred HHHHHHHHHHHHHHHHh-cCCEEEEEECHhHHHHHHH
Confidence 77766 88999999842 6999999998877765553
No 366
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=28.12 E-value=76 Score=30.37 Aligned_cols=41 Identities=24% Similarity=0.195 Sum_probs=33.4
Q ss_pred EEEEEC-CCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhh
Q 011106 7 NIVMFP-FMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKK 49 (493)
Q Consensus 7 ~il~~~-~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~ 49 (493)
|++|+. =|+-|=..-..++|.++++ +|++|.++++......
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~--~G~rtLlvS~Dpa~~L 43 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR--RGKRTLLVSTDPAHSL 43 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH--TTS-EEEEESSTTTHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh--CCCCeeEeecCCCccH
Confidence 566666 5899999999999999999 9999999998766544
No 367
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=27.84 E-value=93 Score=32.36 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=26.4
Q ss_pred HHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEe
Q 011106 102 AFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFS 144 (493)
Q Consensus 102 ~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~ 144 (493)
++.+.+++.+ ||+||.+. ....+|+.+|||++.++
T Consensus 353 el~~~i~~~~-----PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAEAA-----PELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHhcC-----CCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 4444555555 99999886 46779999999998875
No 368
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=27.77 E-value=1.1e+02 Score=27.46 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=20.0
Q ss_pred cEEEEECCCCcc--cHHHHHHHHHHHHh
Q 011106 6 ENIVMFPFMAQG--HIIPFLALALHIEQ 31 (493)
Q Consensus 6 ~~il~~~~~~~G--H~~p~l~LA~~L~~ 31 (493)
++|++.-|.-+| ..||.-.+++.|..
T Consensus 2 ~~ILvTGF~PF~~~~~NPS~~~~~~L~~ 29 (215)
T PRK13197 2 MKILVTGFDPFGGEKINPSWEAVKQLPG 29 (215)
T ss_pred CEEEEeeccCCCCCCCCcHHHHHHHccc
Confidence 568888875443 48999999999955
No 369
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=27.60 E-value=6e+02 Score=24.99 Aligned_cols=44 Identities=23% Similarity=0.338 Sum_probs=31.3
Q ss_pred CCCeEEeeccChH---HhhccCCcCceeeccC----chhHHHHHHhCCcEecc
Q 011106 344 KRGLLMKNWAPQL---EVLSHRATCAFLSHCG----WNSVLEALIHGVPIIGW 389 (493)
Q Consensus 344 ~~nv~~~~~~pq~---~lL~~~~v~~~I~HgG----~gs~~eal~~GvP~l~~ 389 (493)
.+.|.+..-+|++ ++|.+.++ |++-.= .-.+.||.++|.|++..
T Consensus 251 ~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlTEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 251 QDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLTEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred cCceEEecccchHHHHHHHhcCcE--EeccHHHHHHHHHHHHHHhCCCEEEEe
Confidence 4667777888874 46777776 665432 23678999999999865
No 370
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=27.58 E-value=91 Score=32.38 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=26.5
Q ss_pred HHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEec
Q 011106 102 AFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSG 145 (493)
Q Consensus 102 ~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~ 145 (493)
.+.+.+++.+ ||+||.+. ....+|+.+|||++.++.
T Consensus 355 ei~~~i~~~~-----pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 355 EVADAIAALE-----PELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHhcC-----CCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 3344444444 99999996 467789999999988753
No 371
>PRK11269 glyoxylate carboligase; Provisional
Probab=27.56 E-value=3.1e+02 Score=29.04 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=21.5
Q ss_pred cCceeeccC------chhHHHHHHhCCcEeccc
Q 011106 364 TCAFLSHCG------WNSVLEALIHGVPIIGWP 390 (493)
Q Consensus 364 v~~~I~HgG------~gs~~eal~~GvP~l~~P 390 (493)
+++.++|.| .+.+.+|.+.++|||++.
T Consensus 69 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 69 IGVCIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred cEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 444666666 678899999999999985
No 372
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=27.45 E-value=2.6e+02 Score=24.51 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEecc
Q 011106 20 IPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIP 66 (493)
Q Consensus 20 ~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~ 66 (493)
.-++.||+.|.+ .|+++. ++......+++ .++.+..+.
T Consensus 11 ~~l~~lAk~L~~--lGf~I~--AT~GTAk~L~e-----~GI~v~~V~ 48 (187)
T cd01421 11 TGLVEFAKELVE--LGVEIL--STGGTAKFLKE-----AGIPVTDVS 48 (187)
T ss_pred ccHHHHHHHHHH--CCCEEE--EccHHHHHHHH-----cCCeEEEhh
Confidence 447899999999 999983 44556677777 455665555
No 373
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=27.41 E-value=5e+02 Score=28.19 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=29.3
Q ss_pred cEEEEECC-CCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 011106 6 ENIVMFPF-MAQGHIIPFLALALHIEQRHKNYSITFVS 42 (493)
Q Consensus 6 ~~il~~~~-~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~ 42 (493)
+.|++.+. ...|=..-.+.|++.|.+ +|++|-++=
T Consensus 3 k~l~I~~T~t~~GKT~vslgL~~~L~~--~G~~Vg~fK 38 (684)
T PRK05632 3 RSIYLAPTGTGVGLTSVSLGLMRALER--KGVKVGFFK 38 (684)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEeC
Confidence 35777754 568889999999999999 999999985
No 374
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=27.36 E-value=3.1e+02 Score=21.87 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=16.8
Q ss_pred hhhhHHHHHHHHHhhcCCCCCcEEEEC
Q 011106 97 TSLKPAFKEVISSLINQGRPPLCIIAD 123 (493)
Q Consensus 97 ~~~~~~l~~~l~~~~~~~~~pDlvI~D 123 (493)
......+.+++++.+ ||+|++-
T Consensus 86 ~~~~~~l~~~i~~~~-----p~~V~t~ 107 (128)
T PF02585_consen 86 EELVRDLEDLIREFR-----PDVVFTP 107 (128)
T ss_dssp HHHHHHHHHHHHHH------ESEEEEE
T ss_pred HHHHHHHHHHHHHcC-----CCEEEEC
Confidence 455677888999998 9999875
No 375
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=27.22 E-value=10 Score=20.58 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=13.1
Q ss_pred CchhHHHHHHhCCcEec
Q 011106 372 GWNSVLEALIHGVPIIG 388 (493)
Q Consensus 372 G~gs~~eal~~GvP~l~ 388 (493)
|.|+++-.|..|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888888988888664
No 376
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=27.19 E-value=1.7e+02 Score=25.03 Aligned_cols=48 Identities=13% Similarity=0.015 Sum_probs=32.8
Q ss_pred HHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchh-------------h--HHHHHHcCCceEEEechh
Q 011106 95 ASTSLKPAFKEVISSLINQGRPPLCIIADIFFGW-------------T--CGVAKELNVFHAIFSGSG 147 (493)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~-------------~--~~~A~~lgiP~i~~~~~~ 147 (493)
.+......+.+++++.+ ||.++.+..++. + ..++...|||+.-++|..
T Consensus 45 Rl~~I~~~l~~~i~~~~-----Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~~ 107 (164)
T PRK00039 45 RLKQIYDGLSELIDEYQ-----PDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPLQ 107 (164)
T ss_pred HHHHHHHHHHHHHHHhC-----CCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 34455578888898888 999987733221 1 136678899998886553
No 377
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=27.12 E-value=1.2e+02 Score=24.01 Aligned_cols=36 Identities=8% Similarity=0.090 Sum_probs=31.2
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
++..+.++..|.....-++..|.+ +|++|.++....
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~--~G~~v~~l~~~~ 37 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRD--NGFEVIDLGVDV 37 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHH--CCCEEEEcCCCC
Confidence 567778899999999999999999 999999986543
No 378
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=27.00 E-value=57 Score=31.37 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=30.2
Q ss_pred hhccCCcCceeeccCchhHHHHHH---hCCcEeccccccc
Q 011106 358 VLSHRATCAFLSHCGWNSVLEALI---HGVPIIGWPMAAE 394 (493)
Q Consensus 358 lL~~~~v~~~I~HgG~gs~~eal~---~GvP~l~~P~~~D 394 (493)
-|..-+++++|.=||-+|..-|.. +|+|+|.+|-+.|
T Consensus 87 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkTID 126 (317)
T cd00763 87 QLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTID 126 (317)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEeccccc
Confidence 455567889999999999877754 5999999998766
No 379
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=26.91 E-value=1.5e+02 Score=26.62 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=19.5
Q ss_pred cEEEEECCCCcc--cHHHHHHHHHHHHh
Q 011106 6 ENIVMFPFMAQG--HIIPFLALALHIEQ 31 (493)
Q Consensus 6 ~~il~~~~~~~G--H~~p~l~LA~~L~~ 31 (493)
|+|++..|.-+| -.||...+++.|..
T Consensus 1 M~vLiTGF~PF~g~~~NPS~~~v~~L~~ 28 (209)
T PRK13193 1 MTVLLFGFEPFLEYKENPSQLIVEALNG 28 (209)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHHhhc
Confidence 358888775444 38999999999965
No 380
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=26.73 E-value=59 Score=31.38 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=30.1
Q ss_pred hhccCCcCceeeccCchhHHHHHH---hCCcEeccccccc
Q 011106 358 VLSHRATCAFLSHCGWNSVLEALI---HGVPIIGWPMAAE 394 (493)
Q Consensus 358 lL~~~~v~~~I~HgG~gs~~eal~---~GvP~l~~P~~~D 394 (493)
-|..-+++++|.=||-+|..-|.. .|+|+|.+|-+.|
T Consensus 89 ~l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkTID 128 (324)
T TIGR02483 89 NLKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKTID 128 (324)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeeccccC
Confidence 355567888999999999877744 5999999998765
No 381
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=26.73 E-value=1.3e+02 Score=26.87 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=19.4
Q ss_pred cEEEEECCCCcc--cHHHHHHHHHHHHh
Q 011106 6 ENIVMFPFMAQG--HIIPFLALALHIEQ 31 (493)
Q Consensus 6 ~~il~~~~~~~G--H~~p~l~LA~~L~~ 31 (493)
|+|++..|.-+| ..||...+++.|..
T Consensus 1 M~ILvTGF~PF~~~~~NPS~~~~~~L~~ 28 (208)
T PRK13194 1 MKVLVTGFEPFGGDKKNPTMDIVKALDG 28 (208)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHhccc
Confidence 458887765443 48999999999965
No 382
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=26.61 E-value=1.1e+02 Score=29.21 Aligned_cols=26 Identities=12% Similarity=0.000 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEcCC
Q 011106 292 SASQMMQLAMALEASGKNFIWVVRPP 317 (493)
Q Consensus 292 ~~~~~~~i~~al~~~~~~vi~~~~~~ 317 (493)
+.+....+.+++.+...+.||.+.+.
T Consensus 51 ~~~Ra~dL~~a~~Dp~i~aI~~~rGG 76 (308)
T cd07062 51 PEERAEELMAAFADPSIKAIIPTIGG 76 (308)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCcc
Confidence 45567779999999999999998775
No 383
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=26.60 E-value=4.5e+02 Score=23.19 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=28.2
Q ss_pred EEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVS 42 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~ 42 (493)
=|.+++..+.|-....+.+|-+-.- +|.+|.++.
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~G--hG~rv~vvQ 63 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALG--HGLRVGVVQ 63 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhc--CCCEEEEEE
Confidence 3777888999999998888877777 898888775
No 384
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=26.04 E-value=4e+02 Score=25.22 Aligned_cols=58 Identities=24% Similarity=0.210 Sum_probs=38.9
Q ss_pred eeeccCchhHHHHHHhCCcEecccccc--cchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHH
Q 011106 367 FLSHCGWNSVLEALIHGVPIIGWPMAA--EQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIEL 431 (493)
Q Consensus 367 ~I~HgG~gs~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~ 431 (493)
.=.+.|.+.+..|+.+|+....+-.+. +..+-+..+.+ -.+.+.+ .-|.++|.+.+++
T Consensus 198 LP~~rG~~~~~~ai~~G~~~tG~TvH~v~~~~D~G~Ii~Q---~~v~I~~----~dt~~~L~~r~~~ 257 (286)
T PRK13011 198 LPGFKGAKPYHQAYERGVKLIGATAHYVTDDLDEGPIIEQ---DVERVDH----AYSPEDLVAKGRD 257 (286)
T ss_pred CCCCCCCcHHHHHHHCCCCeEEEEEEEEcCCCcCCCcEEE---EEEEcCC----CCCHHHHHHHHHH
Confidence 334468899999999999988877542 34445555552 3444543 4588888888765
No 385
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=25.85 E-value=87 Score=29.59 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=29.7
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
|.+...||.++-.+..|+ .+|..|.. +||+|+++-..
T Consensus 1 ~~~~~~~V~ViGaG~mG~-----~iA~~~a~--~G~~V~l~d~~ 37 (286)
T PRK07819 1 MSDAIQRVGVVGAGQMGA-----GIAEVCAR--AGVDVLVFETT 37 (286)
T ss_pred CCCCccEEEEEcccHHHH-----HHHHHHHh--CCCEEEEEECC
Confidence 554556899998888886 67888899 99999999644
No 386
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=25.76 E-value=99 Score=30.78 Aligned_cols=45 Identities=9% Similarity=0.050 Sum_probs=35.7
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
.+||++.-.++.|= .-.+.+.+.|.+ .|++|.++.++.....+..
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~--~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVR--QGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHh--CCCEEEEEECHhHHHHHHH
Confidence 46777776665554 668999999999 9999999999887777664
No 387
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=25.62 E-value=2.7e+02 Score=26.22 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=19.0
Q ss_pred HHHHHHHHhcCCCeEEEEEeCccchh
Q 011106 23 LALALHIEQRHKNYSITFVSTPLNIK 48 (493)
Q Consensus 23 l~LA~~L~~~~~Gh~Vt~~~~~~~~~ 48 (493)
.++|..+.+ +|++|.+++......
T Consensus 3 ~a~a~~~a~--~g~~vllv~~Dp~~~ 26 (284)
T TIGR00345 3 CATAIRLAE--QGKKVLLVSTDPAHS 26 (284)
T ss_pred HHHHHHHHH--CCCeEEEEECCCCCC
Confidence 467888999 999999998765443
No 388
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=25.55 E-value=81 Score=30.14 Aligned_cols=34 Identities=18% Similarity=0.088 Sum_probs=28.2
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
.++||.|+-.+..|. ++|+.|.+ .||+|+++...
T Consensus 3 ~~m~I~iiG~G~~G~-----~lA~~l~~--~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWGS-----TLAGLASA--NGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHHH-----HHHHHHHH--CCCEEEEEeCC
Confidence 567899998887775 78999999 99999988643
No 389
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=25.38 E-value=1.1e+02 Score=30.87 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=26.0
Q ss_pred HHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEec
Q 011106 103 FKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSG 145 (493)
Q Consensus 103 l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~ 145 (493)
+.+.+++.+ ||++|.+.+ ...+|+.+|+|++.++.
T Consensus 362 ~~~~i~~~~-----pdliig~~~---~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 362 VGDMIARTE-----PELIFGTQM---ERHIGKRLDIPCAVISA 396 (430)
T ss_pred HHHHHHhhC-----CCEEEecch---hhHHHHHcCCCEEEEeC
Confidence 444555555 999999973 55678999999988753
No 390
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=25.36 E-value=5.2e+02 Score=25.75 Aligned_cols=53 Identities=9% Similarity=0.161 Sum_probs=33.8
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCC-eEEEEEeCc-cchhhhhccCCCCCCceEEecc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKN-YSITFVSTP-LNIKKLKSSLPPNSSIDLHEIP 66 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~G-h~Vt~~~~~-~~~~~v~~~~~~~~~i~~~~i~ 66 (493)
+++|+++-.+..|+ .+|..|.+ +| ++|+++.-. .....+..... ..++...++
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~--~~d~~V~iAdRs~~~~~~i~~~~~--~~v~~~~vD 55 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQ--NGDGEVTIADRSKEKCARIAELIG--GKVEALQVD 55 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHh--CCCceEEEEeCCHHHHHHHHhhcc--ccceeEEec
Confidence 35788888777776 47888888 88 999999743 33334433222 345555544
No 391
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=24.78 E-value=5.8e+02 Score=23.85 Aligned_cols=39 Identities=21% Similarity=0.083 Sum_probs=22.7
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
++|+++..++.++- -...+.+.|.+...+.++++++++.
T Consensus 171 ~~iLi~~GG~d~~~-~~~~~l~~l~~~~~~~~i~vv~G~~ 209 (279)
T TIGR03590 171 RRVLVSFGGADPDN-LTLKLLSALAESQINISITLVTGSS 209 (279)
T ss_pred CeEEEEeCCcCCcC-HHHHHHHHHhccccCceEEEEECCC
Confidence 45666555555542 3445566665432567888888764
No 392
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=24.68 E-value=2.7e+02 Score=26.43 Aligned_cols=39 Identities=8% Similarity=0.166 Sum_probs=32.9
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
...|.++-.++.|=..-+..|+..|.+ +|+.|.++....
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~--~~~~v~~i~~D~ 72 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRR--RGLKVAVIAVDP 72 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecCC
Confidence 346666667899999999999999999 999999987654
No 393
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=24.65 E-value=31 Score=32.43 Aligned_cols=40 Identities=28% Similarity=0.458 Sum_probs=32.1
Q ss_pred ccCchhHH--HHHHhCCcEecccccccchhhHHHHhhhhcee
Q 011106 370 HCGWNSVL--EALIHGVPIIGWPMAAEQFFNAKFLEQEMGVC 409 (493)
Q Consensus 370 HgG~gs~~--eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G 409 (493)
-||||+++ .|-.+|+-++.+-+...|..+++.-.+..|+-
T Consensus 80 GCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 80 GCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred CCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 47888654 66677999999999999999999744454887
No 394
>PRK14071 6-phosphofructokinase; Provisional
Probab=24.61 E-value=66 Score=31.60 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=29.9
Q ss_pred HhhccCCcCceeeccCchhHHHHHH----hCCcEeccccccc
Q 011106 357 EVLSHRATCAFLSHCGWNSVLEALI----HGVPIIGWPMAAE 394 (493)
Q Consensus 357 ~lL~~~~v~~~I~HgG~gs~~eal~----~GvP~l~~P~~~D 394 (493)
+-|..-+++++|.=||.+|..-+.. +|+|+|.+|-+.|
T Consensus 101 ~~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTID 142 (360)
T PRK14071 101 DGYHSLGLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTID 142 (360)
T ss_pred HHHHHcCCCEEEEECChhHHHHHHHHHHhcCCcEEEeccccc
Confidence 3455668899999999998865533 4999999998766
No 395
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=24.55 E-value=3.8e+02 Score=27.86 Aligned_cols=31 Identities=23% Similarity=0.131 Sum_probs=24.3
Q ss_pred HHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEE
Q 011106 105 EVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIF 143 (493)
Q Consensus 105 ~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~ 143 (493)
+.+++.+ ||++|.... ...+|+++|||++-.
T Consensus 392 ~~l~~~~-----~Dllig~s~---~~~~A~k~gIP~ld~ 422 (513)
T TIGR01861 392 EAMEMLK-----PDIILTGKR---PGEVSKKMRVPYLNA 422 (513)
T ss_pred HHHHhcC-----CCEEEecCc---cchhHhhcCCCEEEc
Confidence 4456666 999999875 457899999999764
No 396
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=24.50 E-value=5e+02 Score=23.00 Aligned_cols=70 Identities=23% Similarity=0.216 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCch
Q 011106 295 QMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWN 374 (493)
Q Consensus 295 ~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~g 374 (493)
.-..+.+.+...+..+|+..|.- ..|.+.|..+.. ..-+- =||++ .=.++|..
T Consensus 67 ~d~~l~~~l~~~~~dlvvLAGyM------------rIL~~~fl~~~~--grIlN-----------IHPSL--LP~f~G~h 119 (200)
T COG0299 67 FDRALVEALDEYGPDLVVLAGYM------------RILGPEFLSRFE--GRILN-----------IHPSL--LPAFPGLH 119 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEcchH------------HHcCHHHHHHhh--cceEe-----------cCccc--ccCCCCch
Confidence 44458899999999988887754 236666665543 21111 36776 77889999
Q ss_pred hHHHHHHhCCcEecccc
Q 011106 375 SVLEALIHGVPIIGWPM 391 (493)
Q Consensus 375 s~~eal~~GvP~l~~P~ 391 (493)
+..+|+.+|+..-.+-.
T Consensus 120 ~~~~A~~aG~k~sG~TV 136 (200)
T COG0299 120 AHEQALEAGVKVSGCTV 136 (200)
T ss_pred HHHHHHHcCCCccCcEE
Confidence 99999999999765553
No 397
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=24.24 E-value=1.9e+02 Score=24.72 Aligned_cols=37 Identities=11% Similarity=0.236 Sum_probs=30.7
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
+=+.++-+-..|=..=+-+|.+.|.+ +||+|..+=+.
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~L~~--~G~rVa~iKH~ 39 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRKLKA--RGYRVATVKHA 39 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHHHHHh--CCcEEEEEEec
Confidence 44566667788999999999999999 99999988544
No 398
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=24.18 E-value=90 Score=28.32 Aligned_cols=25 Identities=8% Similarity=0.262 Sum_probs=19.9
Q ss_pred cHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 18 HIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 18 H~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
|...|-+.|+.|.+ +||+|+++...
T Consensus 47 ~~saMRhfa~~L~~--~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRA--KGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHH--TT--EEEE-TT
T ss_pred HHHHHHHHHHHHHh--CCCEEEEEeCC
Confidence 67889999999999 99999999866
No 399
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=24.05 E-value=4.1e+02 Score=26.81 Aligned_cols=39 Identities=8% Similarity=0.068 Sum_probs=32.4
Q ss_pred EEEEECCCCcccHHHHHHHHHHHH--hcCCCeEEEEEeCccch
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIE--QRHKNYSITFVSTPLNI 47 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~--~~~~Gh~Vt~~~~~~~~ 47 (493)
.++|+-..+-|=..-...||..+. . .|++|.+++...++
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~--~g~~V~li~~D~~r 263 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLY--GKKKVALITLDTYR 263 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhc--CCCeEEEEECCccH
Confidence 567776789999999999999987 5 68999999987654
No 400
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=23.93 E-value=1.2e+02 Score=27.92 Aligned_cols=39 Identities=10% Similarity=-0.105 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcCCCCCcEEEECCcch------hhHHHHHHcCCceEEEe
Q 011106 101 PAFKEVISSLINQGRPPLCIIADIFFG------WTCGVAKELNVFHAIFS 144 (493)
Q Consensus 101 ~~l~~~l~~~~~~~~~pDlvI~D~~~~------~~~~~A~~lgiP~i~~~ 144 (493)
+.+.+++++.. .|++|=-.+-+ -+..+|+..|||++.|-
T Consensus 56 e~l~~~l~e~~-----i~llIDATHPyAa~iS~Na~~aake~gipy~r~e 100 (257)
T COG2099 56 EGLAAFLREEG-----IDLLIDATHPYAARISQNAARAAKETGIPYLRLE 100 (257)
T ss_pred HHHHHHHHHcC-----CCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 57888899888 99988443322 24468899999999983
No 401
>PRK03202 6-phosphofructokinase; Provisional
Probab=23.92 E-value=68 Score=30.90 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=30.3
Q ss_pred hhccCCcCceeeccCchhHHHHHH---hCCcEeccccccc
Q 011106 358 VLSHRATCAFLSHCGWNSVLEALI---HGVPIIGWPMAAE 394 (493)
Q Consensus 358 lL~~~~v~~~I~HgG~gs~~eal~---~GvP~l~~P~~~D 394 (493)
-|..-+++++|.=||.+|..-+.. +|+|+|.+|-+.|
T Consensus 88 ~l~~~~Id~Li~IGGd~s~~~a~~L~e~~i~vigiPkTID 127 (320)
T PRK03202 88 NLKKLGIDALVVIGGDGSYMGAKRLTEHGIPVIGLPGTID 127 (320)
T ss_pred HHHHcCCCEEEEeCChHHHHHHHHHHhcCCcEEEeccccc
Confidence 355567889999999999877754 5999999998776
No 402
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=23.80 E-value=4.8e+02 Score=22.59 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=41.5
Q ss_pred EeccccccchhHHHHHHHhcCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHH
Q 011106 218 LCNTIEEFDQIGFIYLKRKLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMM 297 (493)
Q Consensus 218 l~~s~~~le~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~ 297 (493)
++-+-++.-......++..+ |.+..+|- ...- .....+.+.+.+....++ +|+|++|+= .+=.
T Consensus 53 llG~~~~v~~~~~~~l~~~y-P~l~i~g~-~g~f---------~~~~~~~i~~~I~~s~~d-il~VglG~P-----kQE~ 115 (177)
T TIGR00696 53 LYGGKPDVLQQLKVKLIKEY-PKLKIVGA-FGPL---------EPEERKAALAKIARSGAG-IVFVGLGCP-----KQEI 115 (177)
T ss_pred EECCCHHHHHHHHHHHHHHC-CCCEEEEE-CCCC---------ChHHHHHHHHHHHHcCCC-EEEEEcCCc-----HhHH
Confidence 33333333334455666667 45555553 1111 011234455666555433 999999853 2222
Q ss_pred HHHHHHHhCCCcEEEEEcCC
Q 011106 298 QLAMALEASGKNFIWVVRPP 317 (493)
Q Consensus 298 ~i~~al~~~~~~vi~~~~~~ 317 (493)
.+.+-....+..+++.+|..
T Consensus 116 ~~~~~~~~~~~~v~~gvGg~ 135 (177)
T TIGR00696 116 WMRNHRHLKPDAVMIGVGGS 135 (177)
T ss_pred HHHHhHHhCCCcEEEEecee
Confidence 23333344566777777654
No 403
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=23.67 E-value=94 Score=31.33 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEe
Q 011106 101 PAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFS 144 (493)
Q Consensus 101 ~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~ 144 (493)
.++.+++++.+ ||++|.... ...+|+.+|||+..+.
T Consensus 359 ~e~~~~i~~~~-----pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 359 YELEEFVKRLK-----PDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHHhC-----CCEEEecCc---chhhhhhcCCCeEeCC
Confidence 35566677767 999999975 6778999999998764
No 404
>PRK10637 cysG siroheme synthase; Provisional
Probab=23.65 E-value=6.9e+02 Score=25.46 Aligned_cols=147 Identities=12% Similarity=0.086 Sum_probs=77.3
Q ss_pred CcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHH
Q 011106 278 NSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLE 357 (493)
Q Consensus 278 ~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~ 357 (493)
+.++.|+.|.... ++ +..|.+.+.++.++... +.+.+..-.. ..++....--.+..
T Consensus 13 ~~vlvvGgG~vA~------rk-~~~ll~~ga~v~visp~---------------~~~~~~~l~~--~~~i~~~~~~~~~~ 68 (457)
T PRK10637 13 RDCLLVGGGDVAE------RK-ARLLLDAGARLTVNALA---------------FIPQFTAWAD--AGMLTLVEGPFDES 68 (457)
T ss_pred CEEEEECCCHHHH------HH-HHHHHHCCCEEEEEcCC---------------CCHHHHHHHh--CCCEEEEeCCCChH
Confidence 5588888776542 22 24455577777666532 1122221111 34454444333455
Q ss_pred hhccCCcCceeeccCchhHHHHHH-----hCCcEecccccccchh-----hHHHHhhhhceeEEeecCCCCccCHHHHHH
Q 011106 358 VLSHRATCAFLSHCGWNSVLEALI-----HGVPIIGWPMAAEQFF-----NAKFLEQEMGVCVEVARGKTCEVKHEDVVA 427 (493)
Q Consensus 358 lL~~~~v~~~I~HgG~gs~~eal~-----~GvP~l~~P~~~DQ~~-----na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ 427 (493)
.|..+.+ +|.--+--.+.+.++ .|+++-+ .|++. .-..+.+- ++-+.+..+.....-...|++
T Consensus 69 dl~~~~l--v~~at~d~~~n~~i~~~a~~~~~lvN~----~d~~~~~~f~~pa~~~~g-~l~iaisT~G~sP~~a~~lr~ 141 (457)
T PRK10637 69 LLDTCWL--AIAATDDDAVNQRVSEAAEARRIFCNV----VDAPKAASFIMPSIIDRS-PLMVAVSSGGTSPVLARLLRE 141 (457)
T ss_pred HhCCCEE--EEECCCCHHHhHHHHHHHHHcCcEEEE----CCCcccCeEEEeeEEecC-CEEEEEECCCCCcHHHHHHHH
Confidence 5666664 666555555555544 3555433 34433 33334433 455556553333344577888
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q 011106 428 KIELVMNETDKGKEIRRKVSEVREMIKNAM 457 (493)
Q Consensus 428 ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~ 457 (493)
.|.+++.+. .+.+-+.+.++++.+++..
T Consensus 142 ~ie~~~~~~--~~~~~~~~~~~R~~~k~~~ 169 (457)
T PRK10637 142 KLESLLPQH--LGQVAKYAGQLRGRVKQQF 169 (457)
T ss_pred HHHHhcchh--HHHHHHHHHHHHHHHHHhc
Confidence 888888433 3356666777777776443
No 405
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=23.64 E-value=5.4e+02 Score=24.40 Aligned_cols=55 Identities=27% Similarity=0.273 Sum_probs=37.3
Q ss_pred cCchhHHHHHHhCCcEecccccc--cchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHH
Q 011106 371 CGWNSVLEALIHGVPIIGWPMAA--EQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELV 432 (493)
Q Consensus 371 gG~gs~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~ 432 (493)
.|.+....|+..|+....+-.+. +..+.+..+.+. -+.+.. .-|.++|.+.+.++
T Consensus 206 ~G~~~~~~ai~~G~k~tG~TvH~v~~~lD~GpII~Q~---~v~V~~----~dt~e~L~~r~~~~ 262 (289)
T PRK13010 206 KGARPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQD---VERVDH----SYSPEDLVAKGRDV 262 (289)
T ss_pred CCCCHHHHHHHcCCCeEEEEEEEEcCCCCCCCceEEE---EEEcCC----CCCHHHHHHHHHHH
Confidence 58899999999999998887542 444566665533 344443 34778887776654
No 406
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=23.59 E-value=4.8e+02 Score=23.63 Aligned_cols=46 Identities=20% Similarity=0.068 Sum_probs=37.2
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
+.=|+++-.|+.|=..=.-.|++-|.- .|++..++.....+.....
T Consensus 12 kl~ivmVGLPArGKs~ia~kl~ryL~w--~g~~~~vFn~g~yRR~~~~ 57 (222)
T PF01591_consen 12 KLVIVMVGLPARGKSYIARKLCRYLNW--LGVKTKVFNVGDYRRKLSG 57 (222)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHH--TT--EEEEEHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhh--cCCCcceeecccceecccc
Confidence 345777889999999999999999999 9999999998877776665
No 407
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=23.56 E-value=2.3e+02 Score=18.84 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCC-hHHHHHHHHHH
Q 011106 421 KHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGS-SVKAMDDFLSA 477 (493)
Q Consensus 421 ~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~-~~~~~~~~~~~ 477 (493)
|.++|..+|+.+|.+.+ -+... .+.+++.+.+.. +-+-+ ....++.++..
T Consensus 1 td~~i~~~i~~iL~~~d-l~~vT--~k~vr~~Le~~~----~~dL~~~K~~I~~~I~~ 51 (54)
T PF08766_consen 1 TDEEIREAIREILREAD-LDTVT--KKQVREQLEERF----GVDLSSRKKFIKELIDE 51 (54)
T ss_dssp -HHHHHHHHHHHHTTS--GGG----HHHHHHHHHHH-----SS--SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-HhHhh--HHHHHHHHHHHH----CCCcHHHHHHHHHHHHH
Confidence 46789999999998772 22222 334444444333 33332 33356666554
No 408
>PLN02880 tyrosine decarboxylase
Probab=23.52 E-value=1.5e+02 Score=30.51 Aligned_cols=69 Identities=10% Similarity=-0.002 Sum_probs=43.4
Q ss_pred CceeeccCchhHHHHHHhCC------------cEecccccccchhhHHHHhhhhcee----EEeecCC--CCccCHHHHH
Q 011106 365 CAFLSHCGWNSVLEALIHGV------------PIIGWPMAAEQFFNAKFLEQEMGVC----VEVARGK--TCEVKHEDVV 426 (493)
Q Consensus 365 ~~~I~HgG~gs~~eal~~Gv------------P~l~~P~~~DQ~~na~~v~~~lG~G----~~~~~~~--~~~~~~~~l~ 426 (493)
+.+++.||.-+.+.||.... +-+++-...+=+.--.+..+.||+| +.++.+. ...++.+.|.
T Consensus 148 gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~ 227 (490)
T PLN02880 148 GGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLS 227 (490)
T ss_pred ceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHH
Confidence 46889999888877765432 2222222222244555555677998 3454432 4579999999
Q ss_pred HHHHHHh
Q 011106 427 AKIELVM 433 (493)
Q Consensus 427 ~ai~~~l 433 (493)
++|++..
T Consensus 228 ~~i~~~~ 234 (490)
T PLN02880 228 EAISTDL 234 (490)
T ss_pred HHHHHHH
Confidence 9998754
No 409
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=23.51 E-value=7.3e+02 Score=26.24 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=34.4
Q ss_pred eeeccCchhHHH--HHHhCCcEecccccc-cchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhc
Q 011106 367 FLSHCGWNSVLE--ALIHGVPIIGWPMAA-EQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMN 434 (493)
Q Consensus 367 ~I~HgG~gs~~e--al~~GvP~l~~P~~~-DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~ 434 (493)
+++.||+|.+.. .+.++-+.... .. ...+.++.++ .+|+ .-. .--+.++|.+++++.+.
T Consensus 470 V~NN~~~g~~~~~~~~~~~~~~~~~--~~~~~~d~~~la~-a~G~--~~~----~v~~~~el~~al~~a~~ 531 (586)
T PRK06276 470 IFDNRTLGMVYQWQNLYYGKRQSEV--HLGETPDFVKLAE-SYGV--KAD----RVEKPDEIKEALKEAIK 531 (586)
T ss_pred EEeCCchHHHHHHHHHHhCCCcccc--cCCCCCCHHHHHH-HCCC--eEE----EECCHHHHHHHHHHHHh
Confidence 899999997753 34445443222 11 1244555554 4454 222 23478999999998874
No 410
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=23.50 E-value=3.4e+02 Score=27.66 Aligned_cols=25 Identities=12% Similarity=0.007 Sum_probs=21.5
Q ss_pred CcEEEECCcchhhHHHHHHcCCceEEEe
Q 011106 117 PLCIIADIFFGWTCGVAKELNVFHAIFS 144 (493)
Q Consensus 117 pDlvI~D~~~~~~~~~A~~lgiP~i~~~ 144 (493)
||++|.+. ....+|+.+|||++.+.
T Consensus 372 ~dliig~s---~~~~~a~~~gip~~~~g 396 (455)
T PRK14476 372 ADLLITNS---HGRQAAERLGIPLLRVG 396 (455)
T ss_pred CCEEEECc---hhHHHHHHcCCCEEEec
Confidence 99999996 35789999999998763
No 411
>PRK06270 homoserine dehydrogenase; Provisional
Probab=23.46 E-value=5e+02 Score=25.21 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=35.2
Q ss_pred ChHHhhccCCcCceee------ccC---chhHHHHHHhCCcEec---ccccccchhhHHHHhhhhceeEEee
Q 011106 354 PQLEVLSHRATCAFLS------HCG---WNSVLEALIHGVPIIG---WPMAAEQFFNAKFLEQEMGVCVEVA 413 (493)
Q Consensus 354 pq~~lL~~~~v~~~I~------HgG---~gs~~eal~~GvP~l~---~P~~~DQ~~na~~v~~~lG~G~~~~ 413 (493)
+..++|..++++.||- |+| .--+.++|.+|+++|+ -|+...-..-.+..++. |+.+...
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~-g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKN-GVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHc-CCEEEEe
Confidence 4567776666555655 443 4456899999999999 47643222222233334 6665543
No 412
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=23.43 E-value=1.2e+02 Score=28.75 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=29.1
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
+||+++-.++.|- .+|..|.+ .||+|+++..+...+.+.+
T Consensus 1 mkI~IiG~G~iG~-----~~a~~L~~--~g~~V~~~~r~~~~~~~~~ 40 (305)
T PRK12921 1 MRIAVVGAGAVGG-----TFGGRLLE--AGRDVTFLVRPKRAKALRE 40 (305)
T ss_pred CeEEEECCCHHHH-----HHHHHHHH--CCCceEEEecHHHHHHHHh
Confidence 4688887777764 57888999 9999999986433344443
No 413
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=23.23 E-value=1.9e+02 Score=28.99 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=21.1
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCC-CeEEEEE
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHK-NYSITFV 41 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~-Gh~Vt~~ 41 (493)
+||+++-.++..| +|++.|++ . |+.+.++
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~--~~~~~~i~~ 30 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQ--SPLVEKVYV 30 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHh--CCCCCEEEE
Confidence 5899999888877 49999987 5 4444444
No 414
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=23.20 E-value=2.2e+02 Score=23.61 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=29.2
Q ss_pred CCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEc
Q 011106 277 ENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVR 315 (493)
Q Consensus 277 ~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~ 315 (493)
...+|++++||-.....+.+..+++.+. .+.+++++..
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 3459999999987777888888888774 4577777664
No 415
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=23.19 E-value=92 Score=24.83 Aligned_cols=32 Identities=6% Similarity=0.088 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 19 IIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 19 ~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
+.|++.+.-.+.- +||+++++.+..+.+.+..
T Consensus 9 Vk~L~eIll~Fil--rGHKT~vyLP~yY~~~~~~ 40 (122)
T PF14626_consen 9 VKALVEILLHFIL--RGHKTVVYLPKYYKNYVDD 40 (122)
T ss_pred HHHHHHHHHHHHh--ccCeeEEEChHHHhccccc
Confidence 5678888888899 9999999998777666554
No 416
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=23.17 E-value=1.1e+02 Score=28.82 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=28.4
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeC-ccchhhhhc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVST-PLNIKKLKS 52 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~-~~~~~~v~~ 52 (493)
+||+++-.+..| ..+|..|.+ .||+|+++.. +...+.+.+
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~--~g~~V~~~~r~~~~~~~~~~ 41 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQ--AGHDVTLVARRGAHLDALNE 41 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHh--CCCeEEEEECChHHHHHHHH
Confidence 367888777776 467888999 9999999985 333334443
No 417
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=23.12 E-value=1.1e+02 Score=26.51 Aligned_cols=28 Identities=14% Similarity=-0.037 Sum_probs=19.6
Q ss_pred CcEEEECCcchh--hHHHHHHcCCceEEEe
Q 011106 117 PLCIIADIFFGW--TCGVAKELNVFHAIFS 144 (493)
Q Consensus 117 pDlvI~D~~~~~--~~~~A~~lgiP~i~~~ 144 (493)
||+||....... ....-+..|||++.+.
T Consensus 70 PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 70 PDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 999998654332 3344578999998874
No 418
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=23.12 E-value=1.2e+02 Score=31.56 Aligned_cols=35 Identities=6% Similarity=-0.002 Sum_probs=26.4
Q ss_pred HHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEe
Q 011106 102 AFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFS 144 (493)
Q Consensus 102 ~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~ 144 (493)
.+++++.+.+ ||++|... .+..+|+.+|||++.+.
T Consensus 428 ~l~~~l~~~~-----~DlliG~s---~~k~~a~~~giPlir~g 462 (515)
T TIGR01286 428 HLRSLVFTEP-----VDFLIGNS---YGKYIQRDTLVPLIRIG 462 (515)
T ss_pred HHHHHHhhcC-----CCEEEECc---hHHHHHHHcCCCEEEec
Confidence 3444555545 99999986 36789999999998873
No 419
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=22.80 E-value=2.6e+02 Score=25.31 Aligned_cols=100 Identities=12% Similarity=0.111 Sum_probs=50.6
Q ss_pred CcEEEEECCCCcc-c---HHHHHHHHHHHHhcCCCeEEEEEeCccc--hhhhhccCCCCCCce--EEeccCCCCCCCCCC
Q 011106 5 KENIVMFPFMAQG-H---IIPFLALALHIEQRHKNYSITFVSTPLN--IKKLKSSLPPNSSID--LHEIPFNSSSHGLPP 76 (493)
Q Consensus 5 ~~~il~~~~~~~G-H---~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~--~~~v~~~~~~~~~i~--~~~i~~~~~~~~l~~ 76 (493)
++.|++.+..+.. - ..-+..|++.|.+ +|+.|.++.++.. .+.+.... .+.. ...+.
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~--~~~~vvl~g~~~~~~~~~~~~~~---~~~~~~~~~~~---------- 169 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKE--RGYRVVLLGGPEEQEKEIADQIA---AGLQNPVINLA---------- 169 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCC--CT-EEEE--SSHHHHHHHHHHHH---TTHTTTTEEET----------
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHh--hCceEEEEccchHHHHHHHHHHH---HhcccceEeec----------
Confidence 3567777654332 1 2236899999999 9988888887766 23322211 1110 11111
Q ss_pred CCCCCCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechh
Q 011106 77 NSENCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSG 147 (493)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~ 147 (493)
.. ....++..++.. .|++|+-- .....+|..+|+|.+.+....
T Consensus 170 ------~~-------------~~l~e~~ali~~-------a~~~I~~D--tg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 170 ------GK-------------TSLRELAALISR-------ADLVIGND--TGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp ------TT-------------S-HHHHHHHHHT-------SSEEEEES--SHHHHHHHHTT--EEEEESSS
T ss_pred ------CC-------------CCHHHHHHHHhc-------CCEEEecC--ChHHHHHHHHhCCEEEEecCC
Confidence 00 001223333332 78888652 357789999999999986543
No 420
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=22.78 E-value=83 Score=26.72 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=23.5
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVS 42 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~ 42 (493)
+++|.|+-.+..|. .+|+.|.+ +||+|+++-
T Consensus 1 m~~Ig~IGlG~mG~-----~~a~~L~~--~g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGLGNMGS-----AMARNLAK--AGYEVTVYD 31 (163)
T ss_dssp -BEEEEE--SHHHH-----HHHHHHHH--TTTEEEEEE
T ss_pred CCEEEEEchHHHHH-----HHHHHHHh--cCCeEEeec
Confidence 35788888877665 78999999 999999885
No 421
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=22.46 E-value=1.4e+02 Score=29.82 Aligned_cols=47 Identities=19% Similarity=0.049 Sum_probs=32.7
Q ss_pred HHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcch-------hhH---HHHHHcCCceEEE
Q 011106 92 LLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFG-------WTC---GVAKELNVFHAIF 143 (493)
Q Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~-------~~~---~~A~~lgiP~i~~ 143 (493)
|..-.++....+.+.+++.+ ||++|+-+.+- |+. .+.+.++||.++-
T Consensus 57 f~en~eea~~~i~~mv~k~~-----pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 57 FGENLEEAVARVLEMLKDKE-----PDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred hhhCHHHHHHHHHHHHHhcC-----CCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 33334556677888888888 99999986542 222 2457799999884
No 422
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=22.36 E-value=1.4e+02 Score=29.82 Aligned_cols=47 Identities=21% Similarity=0.113 Sum_probs=33.0
Q ss_pred HHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcch-------hhH---HHHHHcCCceEEE
Q 011106 92 LLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFG-------WTC---GVAKELNVFHAIF 143 (493)
Q Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~-------~~~---~~A~~lgiP~i~~ 143 (493)
|..-.++....+.+.+++.+ ||++|+-+.+- |+. .+.+.++||.++-
T Consensus 57 f~en~eea~~~i~~mv~k~~-----pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 57 FGENLEEAKAKVLEMIKGAN-----PDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred hhhCHHHHHHHHHHHHHhcC-----CCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 34445566677888888888 99999986542 222 2457799999884
No 423
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=22.36 E-value=3.8e+02 Score=27.50 Aligned_cols=107 Identities=16% Similarity=0.174 Sum_probs=58.4
Q ss_pred EeeccCh---HHhhccCCcCceee--ccCchhHH-HHHHhCCc---EecccccccchhhHHHHhhhhc-eeEEeecCCCC
Q 011106 349 MKNWAPQ---LEVLSHRATCAFLS--HCGWNSVL-EALIHGVP---IIGWPMAAEQFFNAKFLEQEMG-VCVEVARGKTC 418 (493)
Q Consensus 349 ~~~~~pq---~~lL~~~~v~~~I~--HgG~gs~~-eal~~GvP---~l~~P~~~DQ~~na~~v~~~lG-~G~~~~~~~~~ 418 (493)
+..-+++ .+++..+++ ++|| ..|+|.+. |-+++..+ +|++- ++.-|. +.|+ .++.+.+
T Consensus 357 ~~~~~~~~~~~aly~~aDv-~lvTslrDGmNLva~Eyva~q~~~~GvLiLS----efaGaa---~~L~~~al~VNP---- 424 (474)
T PF00982_consen 357 IYRSLSFEELLALYRAADV-ALVTSLRDGMNLVAKEYVACQDDNPGVLILS----EFAGAA---EQLSEAALLVNP---- 424 (474)
T ss_dssp E-S---HHHHHHHHHH-SE-EEE--SSBS--HHHHHHHHHS-TS--EEEEE----TTBGGG---GT-TTS-EEE-T----
T ss_pred EecCCCHHHHHHHHHhhhh-EEecchhhccCCcceEEEEEecCCCCceEee----ccCCHH---HHcCCccEEECC----
Confidence 3344555 446677887 6665 68999664 77777665 33332 333333 2446 4588877
Q ss_pred ccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHH
Q 011106 419 EVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAI 479 (493)
Q Consensus 419 ~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 479 (493)
.+.++++++|++.|+-+. ++-++|.+++.+.++... ...=++.+++.|+
T Consensus 425 -~d~~~~A~ai~~AL~M~~--~Er~~r~~~~~~~v~~~~---------~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 425 -WDIEEVADAIHEALTMPP--EERKERHARLREYVREHD---------VQWWAESFLRDLK 473 (474)
T ss_dssp -T-HHHHHHHHHHHHT--H--HHHHHHHHHHHHHHHHT----------HHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHcCCH--HHHHHHHHHHHHHhHhCC---------HHHHHHHHHHHhh
Confidence 799999999999998771 145555566666665322 5667777777765
No 424
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=22.35 E-value=1.4e+02 Score=21.83 Aligned_cols=28 Identities=14% Similarity=0.031 Sum_probs=19.8
Q ss_pred CcEEEECC--cchhhHHHHHHcCCceEEEe
Q 011106 117 PLCIIADI--FFGWTCGVAKELNVFHAIFS 144 (493)
Q Consensus 117 pDlvI~D~--~~~~~~~~A~~lgiP~i~~~ 144 (493)
.--||++. ...-+..+|+.+|||++.-.
T Consensus 31 ~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~ 60 (80)
T PF00391_consen 31 VAGIVTEEGGPTSHAAILARELGIPAIVGV 60 (80)
T ss_dssp SSEEEESSSSTTSHHHHHHHHTT-EEEEST
T ss_pred eEEEEEEcCCccchHHHHHHHcCCCEEEee
Confidence 66777773 33467789999999998853
No 425
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=22.21 E-value=73 Score=31.74 Aligned_cols=29 Identities=28% Similarity=0.571 Sum_probs=22.7
Q ss_pred CCcccHHHHH---HHHHHHHhcCCCeEEEEEeCc
Q 011106 14 MAQGHIIPFL---ALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 14 ~~~GH~~p~l---~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
+-.||+.|++ .+|+-++. +||+|.|+++.
T Consensus 14 lHlGH~~~~l~ADv~aR~~r~--~G~~v~~~tGt 45 (391)
T PF09334_consen 14 LHLGHLYPYLAADVLARYLRL--RGHDVLFVTGT 45 (391)
T ss_dssp -BHHHHHHHHHHHHHHHHHHH--TT-EEEEEEEE
T ss_pred CCCChhHHHHHHHHHHHHHhh--cccceeeEEec
Confidence 5789999876 57788888 99999999864
No 426
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.07 E-value=1.4e+02 Score=29.39 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=34.2
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccch
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNI 47 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~ 47 (493)
.-|+|+-.-+.|-..-+-.||..+.+ +|+.+.+++...++
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kk--kG~K~~LvcaDTFR 141 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKK--KGYKVALVCADTFR 141 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHh--cCCceeEEeecccc
Confidence 35666667899999999999999999 99999999977554
No 427
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=22.06 E-value=6.6e+02 Score=26.34 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=21.9
Q ss_pred cCceeeccCch------hHHHHHHhCCcEeccc
Q 011106 364 TCAFLSHCGWN------SVLEALIHGVPIIGWP 390 (493)
Q Consensus 364 v~~~I~HgG~g------s~~eal~~GvP~l~~P 390 (493)
+.++++|.|-| .+.+|.+.++|+|++-
T Consensus 72 ~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 72 PGICFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred CEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 45588888854 7789999999999884
No 428
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=22.00 E-value=6e+02 Score=27.37 Aligned_cols=41 Identities=17% Similarity=0.058 Sum_probs=24.4
Q ss_pred HHHHHHHHhhcCCCCCcEEEECCcch-hhHHHHHHcCCceEEEechh
Q 011106 102 AFKEVISSLINQGRPPLCIIADIFFG-WTCGVAKELNVFHAIFSGSG 147 (493)
Q Consensus 102 ~l~~~l~~~~~~~~~pDlvI~D~~~~-~~~~~A~~lgiP~i~~~~~~ 147 (493)
.+.+.+++.. ||++|+-.+.. -...+-......++-++++.
T Consensus 66 ~~~~~l~~~~-----~D~iv~~~~~~ii~~~il~~~~~g~iN~H~sl 107 (660)
T PRK08125 66 LWVERIRELA-----PDVIFSFYYRNLLSDEILQLAPAGAFNLHGSL 107 (660)
T ss_pred HHHHHHHhcC-----CCEEEEccccccCCHHHHhhcCCCEEEEeCCc
Confidence 3445567777 99999775432 23344444555567666653
No 429
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=21.87 E-value=69 Score=29.46 Aligned_cols=23 Identities=4% Similarity=0.076 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 21 PFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 21 p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
-.-.|+++|++ +||+|+++++..
T Consensus 21 v~~~L~kaL~~--~G~~V~Vi~P~y 43 (245)
T PF08323_consen 21 VVGSLPKALAK--QGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHH--TT-EEEEEEE-T
T ss_pred HHHHHHHHHHh--cCCeEEEEEccc
Confidence 35678999999 999999999654
No 430
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.70 E-value=1.8e+02 Score=28.02 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=31.9
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc--cchhhhhccCC
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP--LNIKKLKSSLP 55 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~--~~~~~v~~~~~ 55 (493)
-+++.++-.++.||+- +++|++ =|++||.+.+. .-.+.++..|+
T Consensus 182 G~~vgI~GlGGLGh~a--Vq~AKA-----MG~rV~vis~~~~kkeea~~~LGA 227 (360)
T KOG0023|consen 182 GKWVGIVGLGGLGHMA--VQYAKA-----MGMRVTVISTSSKKKEEAIKSLGA 227 (360)
T ss_pred CcEEEEecCcccchHH--HHHHHH-----hCcEEEEEeCCchhHHHHHHhcCc
Confidence 4689999999999963 444444 59999999877 45566665655
No 431
>PRK13604 luxD acyl transferase; Provisional
Probab=21.69 E-value=1.5e+02 Score=28.30 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=29.4
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEE
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFV 41 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~ 41 (493)
+...++++.+..++-..+..+|+.|.+ +|+.|.-+
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~--~G~~vLrf 70 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSS--NGFHVIRY 70 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHH--CCCEEEEe
Confidence 346777888888887779999999999 99998876
No 432
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=21.58 E-value=4.7e+02 Score=30.10 Aligned_cols=38 Identities=11% Similarity=0.190 Sum_probs=28.6
Q ss_pred CcEEEEECCCCc--ccH----HHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 5 KENIVMFPFMAQ--GHI----IPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 5 ~~~il~~~~~~~--GH~----~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
+++|+++-.+.. |+- .-.++++++|++ .||+|.++...
T Consensus 554 ~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~--~G~~vI~v~~n 597 (1050)
T TIGR01369 554 KKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRE--LGYETIMINYN 597 (1050)
T ss_pred CceEEEecCcccccccccccchHHHHHHHHHHh--CCCEEEEEecC
Confidence 468888876643 432 346899999999 99999988654
No 433
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=21.38 E-value=78 Score=31.51 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=30.0
Q ss_pred HhhccCCcCceeeccCchhHHHHHH-------h--CCcEeccccccc
Q 011106 357 EVLSHRATCAFLSHCGWNSVLEALI-------H--GVPIIGWPMAAE 394 (493)
Q Consensus 357 ~lL~~~~v~~~I~HgG~gs~~eal~-------~--GvP~l~~P~~~D 394 (493)
+.|..-.++++|.=||-||..-|.. + |+|+|.+|-+.|
T Consensus 106 ~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTID 152 (403)
T PRK06555 106 ERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTID 152 (403)
T ss_pred HHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeee
Confidence 3466678899999999998765533 3 899999998776
No 434
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=21.24 E-value=1.9e+02 Score=25.12 Aligned_cols=27 Identities=22% Similarity=-0.015 Sum_probs=21.8
Q ss_pred CcEEEECCc--chhhHHHHHHcCCceEEE
Q 011106 117 PLCIIADIF--FGWTCGVAKELNVFHAIF 143 (493)
Q Consensus 117 pDlvI~D~~--~~~~~~~A~~lgiP~i~~ 143 (493)
+|.|++=.- ...+..+|..+|+|++..
T Consensus 54 id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 54 IDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred CCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 999986522 346889999999999987
No 435
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=21.22 E-value=1.7e+02 Score=26.10 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=30.7
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
+.||.+-..|+-|-.+.||.=|+.|++ +|.+|.+..-+
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~--~G~DVViG~ve 42 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKE--QGVDVVIGYVE 42 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHH--TT--EEEEE--
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHH--CCCCEEEEEec
Confidence 468899999999999999999999999 99998887543
No 436
>PRK08163 salicylate hydroxylase; Provisional
Probab=21.05 E-value=1.1e+02 Score=30.17 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=27.3
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVS 42 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~ 42 (493)
|+ ++.+|+++-.+-.| +.+|..|.+ +|++|+++=
T Consensus 1 ~~-~~~~V~IvGaGiaG-----l~~A~~L~~--~g~~v~v~E 34 (396)
T PRK08163 1 MT-KVTPVLIVGGGIGG-----LAAALALAR--QGIKVKLLE 34 (396)
T ss_pred CC-CCCeEEEECCcHHH-----HHHHHHHHh--CCCcEEEEe
Confidence 77 66889999866544 678888999 999999883
No 437
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=20.97 E-value=6e+02 Score=24.80 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=40.4
Q ss_pred eccChHHhhccCCcCceee------ccCchhHHHHHHhCCcEec-ccccccchhhHHHHhhhhceeEEe
Q 011106 351 NWAPQLEVLSHRATCAFLS------HCGWNSVLEALIHGVPIIG-WPMAAEQFFNAKFLEQEMGVCVEV 412 (493)
Q Consensus 351 ~~~pq~~lL~~~~v~~~I~------HgG~gs~~eal~~GvP~l~-~P~~~DQ~~na~~v~~~lG~G~~~ 412 (493)
-|....+++...++.++.+ +-+.--+.++|.+|+.++| -|+..++-.-...++++-|+=+.+
T Consensus 52 ~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v 120 (343)
T TIGR01761 52 LYCEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLV 120 (343)
T ss_pred ccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 4667788888888877764 2335677789999999887 577655554444444342444333
No 438
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=20.90 E-value=2.3e+02 Score=25.85 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=36.2
Q ss_pred EEEEECC-CCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 7 NIVMFPF-MAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 7 ~il~~~~-~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
-|.|... ||.|=..-.+.||..|.+ +|-.|+++=..+++.....
T Consensus 3 vItf~s~KGGaGKTT~~~~LAs~la~--~G~~V~lIDaDpn~pl~~W 47 (231)
T PF07015_consen 3 VITFASSKGGAGKTTAAMALASELAA--RGARVALIDADPNQPLAKW 47 (231)
T ss_pred eEEEecCCCCCcHHHHHHHHHHHHHH--CCCeEEEEeCCCCCcHHHH
Confidence 3555554 899999999999999999 9999999988776665544
No 439
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=20.82 E-value=7.6e+02 Score=23.74 Aligned_cols=27 Identities=15% Similarity=-0.026 Sum_probs=22.2
Q ss_pred CcEEEECCcchhhHHHHHHcCCceEEEec
Q 011106 117 PLCIIADIFFGWTCGVAKELNVFHAIFSG 145 (493)
Q Consensus 117 pDlvI~D~~~~~~~~~A~~lgiP~i~~~~ 145 (493)
.|++|+. ......+|..+|+|.+.+..
T Consensus 261 a~l~Vs~--DSGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 261 ARLFIGV--DSVPMHMAAALGTPLVALFG 287 (344)
T ss_pred CCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 7899976 34577899999999999864
No 440
>PLN02735 carbamoyl-phosphate synthase
Probab=20.75 E-value=5.6e+02 Score=29.66 Aligned_cols=39 Identities=8% Similarity=0.174 Sum_probs=29.6
Q ss_pred CcEEEEECCCC--cccH----HHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 5 KENIVMFPFMA--QGHI----IPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 5 ~~~il~~~~~~--~GH~----~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
.+||+++-.+. .|+. +.-.+++++|++ .||+|..+.+..
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke--~G~~Vi~vd~np 67 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALKE--EGYEVVLINSNP 67 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHHH--cCCEEEEEeCCc
Confidence 35898888664 4544 457789999999 999999887543
No 441
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=20.73 E-value=1.5e+02 Score=26.63 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=26.0
Q ss_pred HHHHhhcCCCCCcEEEECCcc--hhhHHHHHHcCCceEEEechh
Q 011106 106 VISSLINQGRPPLCIIADIFF--GWTCGVAKELNVFHAIFSGSG 147 (493)
Q Consensus 106 ~l~~~~~~~~~pDlvI~D~~~--~~~~~~A~~lgiP~i~~~~~~ 147 (493)
.+..++ ||+||..... .....-....+||++.+....
T Consensus 55 ~i~~l~-----PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 55 AILALK-----PDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HHHHT-------SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred HHHhCC-----CCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 355677 9999988666 455567778899999987654
No 442
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=20.65 E-value=7.5e+02 Score=28.56 Aligned_cols=39 Identities=13% Similarity=0.202 Sum_probs=29.3
Q ss_pred CcEEEEECCCC--cccH----HHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 5 KENIVMFPFMA--QGHI----IPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 5 ~~~il~~~~~~--~GH~----~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
.+||+++..+. .|+. +...+++++|++ .||+|.++.+..
T Consensus 7 ~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e--~G~~vi~v~~np 51 (1068)
T PRK12815 7 IQKILVIGSGPIVIGQAAEFDYSGTQACLALKE--EGYQVVLVNPNP 51 (1068)
T ss_pred CCEEEEECCCcchhcchhhhhhHHHHHHHHHHH--cCCEEEEEeCCc
Confidence 35899888764 3543 256789999999 999999997553
No 443
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=20.60 E-value=1.8e+02 Score=27.86 Aligned_cols=33 Identities=18% Similarity=0.063 Sum_probs=22.3
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
++||+|+..|..+ ...-++|.. .||+|.-+.+.
T Consensus 1 ~mkivF~GTp~fa-----~~~L~~L~~--~~~eivaV~Tq 33 (307)
T COG0223 1 MMRIVFFGTPEFA-----VPSLEALIE--AGHEIVAVVTQ 33 (307)
T ss_pred CcEEEEEcCchhh-----HHHHHHHHh--CCCceEEEEeC
Confidence 3688888876443 444567777 78997766544
No 444
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=20.42 E-value=1.4e+02 Score=31.65 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=21.7
Q ss_pred cCceeeccCc------hhHHHHHHhCCcEeccc
Q 011106 364 TCAFLSHCGW------NSVLEALIHGVPIIGWP 390 (493)
Q Consensus 364 v~~~I~HgG~------gs~~eal~~GvP~l~~P 390 (493)
++++++|.|- +.+.+|.+.++|+|++.
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 4458888774 47889999999999984
No 445
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=20.33 E-value=2.1e+02 Score=25.13 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhcCCCCCcEEEECCcc-hhhHHHHHHcCCceEEEechh
Q 011106 101 PAFKEVISSLINQGRPPLCIIADIFF-GWTCGVAKELNVFHAIFSGSG 147 (493)
Q Consensus 101 ~~l~~~l~~~~~~~~~pDlvI~D~~~-~~~~~~A~~lgiP~i~~~~~~ 147 (493)
..+.+++++... ...++|-..+- +++..+|+.+++|.|.+.|+.
T Consensus 47 ~~l~~~i~~~~~---~~~~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 47 AQLEQLIEELKP---ENVVLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHHHhCCC---CCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 345566666651 12366655444 367789999999999986654
No 446
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.26 E-value=1e+03 Score=25.24 Aligned_cols=60 Identities=18% Similarity=0.061 Sum_probs=35.3
Q ss_pred eeeccCchhHHHH--HHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhc
Q 011106 367 FLSHCGWNSVLEA--LIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMN 434 (493)
Q Consensus 367 ~I~HgG~gs~~ea--l~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~ 434 (493)
+++.||+|.+... +.+|.+.-.. .....++.++..+ . .|..-.. --+.++|.+++++.+.
T Consensus 481 V~NN~~y~~i~~~q~~~~~~~~~~~-~~~~~~d~~~lA~-a--~G~~~~~----v~~~~el~~al~~a~~ 542 (595)
T PRK09107 481 ILNNQYMGMVRQWQQLLHGNRLSHS-YTEAMPDFVKLAE-A--YGAVGIR----CEKPGDLDDAIQEMID 542 (595)
T ss_pred EEeCCccHHHHHHHHHHhCCccccc-cCCCCCCHHHHHH-H--CCCeEEE----ECCHHHHHHHHHHHHh
Confidence 8999999987633 4455431111 1112355666555 3 4443322 2478999999999874
No 447
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=20.25 E-value=2.7e+02 Score=21.96 Aligned_cols=73 Identities=12% Similarity=0.071 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEe-------eccChHHhhccCC-
Q 011106 292 SASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMK-------NWAPQLEVLSHRA- 363 (493)
Q Consensus 292 ~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~-------~~~pq~~lL~~~~- 363 (493)
..+.-..++.++++.+.+++.+..... ........ .+.++.. .|+....|+.-+.
T Consensus 10 rGeia~r~~ra~r~~Gi~tv~v~s~~d------------~~s~~~~~-----ad~~~~~~~~~~~~~yl~~e~I~~ia~~ 72 (110)
T PF00289_consen 10 RGEIAVRIIRALRELGIETVAVNSNPD------------TVSTHVDM-----ADEAYFEPPGPSPESYLNIEAIIDIARK 72 (110)
T ss_dssp -HHHHHHHHHHHHHTTSEEEEEEEGGG------------TTGHHHHH-----SSEEEEEESSSGGGTTTSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCcceeccCchh------------cccccccc-----cccceecCcchhhhhhccHHHHhhHhhh
Confidence 445567799999999999998875331 01111110 3333333 3566655553321
Q ss_pred cCceeeccCchhHHHHHH
Q 011106 364 TCAFLSHCGWNSVLEALI 381 (493)
Q Consensus 364 v~~~I~HgG~gs~~eal~ 381 (493)
-++...|+|+|-+.|...
T Consensus 73 ~g~~~i~pGyg~lse~~~ 90 (110)
T PF00289_consen 73 EGADAIHPGYGFLSENAE 90 (110)
T ss_dssp TTESEEESTSSTTTTHHH
T ss_pred hcCcccccccchhHHHHH
Confidence 145889999998777643
No 448
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=20.19 E-value=4.5e+02 Score=30.29 Aligned_cols=39 Identities=10% Similarity=0.241 Sum_probs=28.5
Q ss_pred CCcEEEEECCCCc--ccH----HHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 4 SKENIVMFPFMAQ--GHI----IPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 4 ~~~~il~~~~~~~--GH~----~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
.+++|+++-.+.. |+- +-++++++.|++ .||++.++...
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~--~G~~vI~vn~n 598 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKK--EGYETIMINNN 598 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHH--cCCEEEEEeCC
Confidence 3578888876532 222 367899999999 99999988754
No 449
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=20.16 E-value=1.9e+02 Score=27.41 Aligned_cols=37 Identities=16% Similarity=0.042 Sum_probs=26.7
Q ss_pred CCcEEEEECCCCcc-c---HHHHHHHHHHHHhcCCCeEEEEEe
Q 011106 4 SKENIVMFPFMAQG-H---IIPFLALALHIEQRHKNYSITFVS 42 (493)
Q Consensus 4 ~~~~il~~~~~~~G-H---~~p~l~LA~~L~~~~~Gh~Vt~~~ 42 (493)
+++||+++..+... | +...-+++++|.+ .||+|.++.
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~--~g~~~~~~~ 42 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLIS--QGYDAVGVD 42 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHH--cCCEEEEEc
Confidence 46789988864322 2 2345688999999 999998774
No 450
>PRK04940 hypothetical protein; Provisional
Probab=20.14 E-value=3e+02 Score=24.03 Aligned_cols=31 Identities=13% Similarity=-0.005 Sum_probs=25.0
Q ss_pred CcEEEECCcc-hhhHHHHHHcCCceEEEechh
Q 011106 117 PLCIIADIFF-GWTCGVAKELNVFHAIFSGSG 147 (493)
Q Consensus 117 pDlvI~D~~~-~~~~~~A~~lgiP~i~~~~~~ 147 (493)
++++|-..+. +|+..+|+.+|+|.|.+.|+.
T Consensus 61 ~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 61 RPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 6788877654 488899999999999997654
No 451
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=20.12 E-value=4.6e+02 Score=20.92 Aligned_cols=36 Identities=11% Similarity=0.003 Sum_probs=24.4
Q ss_pred CcEEEEeccCCcCCCHHHHHHHHHHHHhC--CCcEEEE
Q 011106 278 NSVLYISFGSMNTISASQMMQLAMALEAS--GKNFIWV 313 (493)
Q Consensus 278 ~~~V~vs~GS~~~~~~~~~~~i~~al~~~--~~~vi~~ 313 (493)
..+|+++.||........+..+.+.+++. ...|-+.
T Consensus 2 ~~lvlv~hGS~~~~~~~~~~~~~~~l~~~~~~~~v~~a 39 (126)
T PRK00923 2 LGLLLVGHGSRLPYNKEVVTKIAEKIKEKHPFYIVEVG 39 (126)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 35899999997544446777788888763 3345444
No 452
>PLN02939 transferase, transferring glycosyl groups
Probab=20.08 E-value=1.8e+02 Score=32.67 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=28.5
Q ss_pred CCcEEEEECC---C--CcccH-HHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 4 SKENIVMFPF---M--AQGHI-IPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 4 ~~~~il~~~~---~--~~GH~-~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
+.+||+|++. | -.|-+ .-.-+|.++|.+ .||+|.++++..
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~--~GhdV~VIlP~Y 525 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQK--KGHLVEIVLPKY 525 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHH--cCCeEEEEeCCC
Confidence 4689999872 2 12222 234578899999 999999999754
No 453
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=20.07 E-value=3.5e+02 Score=23.06 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=20.8
Q ss_pred cCceeeccCc------hhHHHHHHhCCcEecccc
Q 011106 364 TCAFLSHCGW------NSVLEALIHGVPIIGWPM 391 (493)
Q Consensus 364 v~~~I~HgG~------gs~~eal~~GvP~l~~P~ 391 (493)
..++++|.|- +++.+|...++|+|++.-
T Consensus 65 ~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 65 PGVVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp EEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred ceEEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 4457888774 477789999999999874
No 454
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=20.06 E-value=1.9e+02 Score=26.83 Aligned_cols=122 Identities=10% Similarity=-0.006 Sum_probs=63.3
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCC
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLP 85 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~ 85 (493)
.+|-+.-.|+.|--.-.-.|++.|.+ +||+|-++.-.+....--.+..- +.++...+... +.-+. ...+
T Consensus 30 ~~iGiTG~PGaGKSTli~~l~~~~~~--~g~~VaVlAVDPSSp~tGGAlLG-DRiRM~~~~~d------~~vfI--RS~a 98 (266)
T PF03308_consen 30 HVIGITGPPGAGKSTLIDALIRELRE--RGKRVAVLAVDPSSPFTGGALLG-DRIRMQELSRD------PGVFI--RSMA 98 (266)
T ss_dssp EEEEEEE-TTSSHHHHHHHHHHHHHH--TT--EEEEEE-GGGGCC---SS---GGGCHHHHTS------TTEEE--EEE-
T ss_pred eEEEeeCCCCCcHHHHHHHHHHHHhh--cCCceEEEEECCCCCCCCCcccc-cHHHhcCcCCC------CCEEE--eecC
Confidence 36677778999999999999999999 99999999765443322111100 22222222110 00000 0000
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcch--hhHHHHHHcCCceEEEech
Q 011106 86 YNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFG--WTCGVAKELNVFHAIFSGS 146 (493)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~--~~~~~A~~lgiP~i~~~~~ 146 (493)
. ..-...+.........+++... +|+||.+..-. .-..++..-.+-++.+.|.
T Consensus 99 t---RG~lGGls~~t~~~v~ll~aaG-----~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg 153 (266)
T PF03308_consen 99 T---RGSLGGLSRATRDAVRLLDAAG-----FDVIIIETVGVGQSEVDIADMADTVVLVLVPG 153 (266)
T ss_dssp -----SSHHHHHHHHHHHHHHHHHTT------SEEEEEEESSSTHHHHHHTTSSEEEEEEESS
T ss_pred c---CCCCCCccHhHHHHHHHHHHcC-----CCEEEEeCCCCCccHHHHHHhcCeEEEEecCC
Confidence 0 1112223333345556666666 99999997654 3345677777766666543
Done!