Query 011106
Match_columns 493
No_of_seqs 134 out of 1453
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 20:56:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hbf_A Flavonoid 3-O-glucosylt 100.0 1.8E-68 6E-73 533.2 39.8 432 5-479 13-453 (454)
2 2pq6_A UDP-glucuronosyl/UDP-gl 100.0 2.1E-62 7.1E-67 499.6 40.0 446 5-481 8-480 (482)
3 2vch_A Hydroquinone glucosyltr 100.0 2.5E-61 8.6E-66 489.9 42.5 451 1-480 1-469 (480)
4 2c1x_A UDP-glucose flavonoid 3 100.0 3.7E-60 1.3E-64 478.2 42.5 438 1-480 1-452 (456)
5 2acv_A Triterpene UDP-glucosyl 100.0 1.3E-59 4.4E-64 475.6 39.0 436 1-479 1-462 (463)
6 2iya_A OLEI, oleandomycin glyc 100.0 5.5E-45 1.9E-49 366.9 32.4 398 4-479 11-421 (424)
7 4amg_A Snogd; transferase, pol 100.0 1.1E-43 3.6E-48 354.8 27.5 364 4-475 21-396 (400)
8 1iir_A Glycosyltransferase GTF 100.0 8E-42 2.7E-46 342.6 27.6 368 6-454 1-383 (415)
9 1rrv_A Glycosyltransferase GTF 100.0 4.7E-41 1.6E-45 337.2 25.0 383 6-478 1-399 (416)
10 3h4t_A Glycosyltransferase GTF 100.0 6.7E-41 2.3E-45 334.4 24.3 378 6-482 1-385 (404)
11 3rsc_A CALG2; TDP, enediyne, s 100.0 9.2E-40 3.1E-44 327.9 29.7 390 4-479 19-413 (415)
12 3ia7_A CALG4; glycosysltransfe 100.0 5.9E-39 2E-43 320.5 33.2 393 5-480 4-399 (402)
13 2yjn_A ERYCIII, glycosyltransf 100.0 2.9E-38 1E-42 319.3 25.0 384 5-480 20-436 (441)
14 2p6p_A Glycosyl transferase; X 100.0 3.2E-37 1.1E-41 306.2 30.2 362 6-481 1-381 (384)
15 2iyf_A OLED, oleandomycin glyc 100.0 1.6E-37 5.5E-42 313.0 28.4 388 5-479 7-399 (430)
16 4fzr_A SSFS6; structural genom 100.0 1.3E-35 4.5E-40 296.0 21.3 353 4-454 14-383 (398)
17 3oti_A CALG3; calicheamicin, T 100.0 6.2E-34 2.1E-38 283.8 29.6 361 4-477 19-395 (398)
18 3tsa_A SPNG, NDP-rhamnosyltran 100.0 1.7E-33 5.7E-38 280.0 25.8 369 5-478 1-387 (391)
19 3otg_A CALG1; calicheamicin, T 100.0 1.2E-30 3.9E-35 261.4 29.2 376 4-479 19-408 (412)
20 3s2u_A UDP-N-acetylglucosamine 100.0 6.7E-29 2.3E-33 243.6 30.2 313 4-437 1-326 (365)
21 2o6l_A UDP-glucuronosyltransfe 100.0 9.6E-28 3.3E-32 209.4 15.4 165 261-454 4-169 (170)
22 1f0k_A MURG, UDP-N-acetylgluco 99.9 5.4E-20 1.8E-24 180.6 29.9 345 1-481 2-357 (364)
23 3hbm_A UDP-sugar hydrolase; PS 99.7 5.8E-15 2E-19 137.4 22.9 117 278-414 157-274 (282)
24 2jzc_A UDP-N-acetylglucosamine 99.6 1.7E-15 5.9E-20 135.1 9.9 134 276-432 26-196 (224)
25 1v4v_A UDP-N-acetylglucosamine 99.4 9.4E-12 3.2E-16 122.2 16.2 130 278-436 198-335 (376)
26 3okp_A GDP-mannose-dependent a 99.3 1.8E-09 6E-14 106.4 27.7 354 1-482 1-380 (394)
27 3fro_A GLGA glycogen synthase; 99.3 3.6E-09 1.2E-13 105.7 29.9 114 344-482 310-431 (439)
28 3c48_A Predicted glycosyltrans 99.3 1.9E-09 6.5E-14 107.9 26.3 98 344-453 305-409 (438)
29 3dzc_A UDP-N-acetylglucosamine 99.2 3.4E-11 1.2E-15 118.9 12.2 79 344-436 287-368 (396)
30 3ot5_A UDP-N-acetylglucosamine 99.2 8.5E-11 2.9E-15 116.2 13.3 79 344-436 281-362 (403)
31 2gek_A Phosphatidylinositol ma 99.2 1.2E-08 4E-13 101.0 28.2 115 344-482 262-384 (406)
32 1vgv_A UDP-N-acetylglucosamine 99.2 1.1E-10 3.7E-15 114.9 13.3 131 278-436 205-343 (384)
33 2jjm_A Glycosyl transferase, g 99.1 1.3E-07 4.4E-12 93.2 32.2 354 4-482 14-386 (394)
34 2r60_A Glycosyl transferase, g 99.1 5.3E-09 1.8E-13 106.6 22.1 96 344-451 334-440 (499)
35 3beo_A UDP-N-acetylglucosamine 99.1 5.6E-09 1.9E-13 102.2 19.6 78 345-436 263-343 (375)
36 2iw1_A Lipopolysaccharide core 99.0 6.5E-08 2.2E-12 94.4 23.6 97 344-451 252-353 (374)
37 2iuy_A Avigt4, glycosyltransfe 99.0 2.5E-08 8.7E-13 96.2 19.0 125 281-434 164-307 (342)
38 4hwg_A UDP-N-acetylglucosamine 99.0 2.4E-09 8.2E-14 104.8 11.1 318 6-436 10-343 (385)
39 2x6q_A Trehalose-synthase TRET 98.9 1.9E-07 6.6E-12 92.6 21.4 112 344-480 292-413 (416)
40 2vsy_A XCC0866; transferase, g 98.6 3.4E-05 1.2E-09 79.7 28.7 120 345-482 434-560 (568)
41 3oy2_A Glycosyltransferase B73 98.6 2.9E-05 1E-09 76.6 26.4 113 347-484 256-393 (413)
42 1rzu_A Glycogen synthase 1; gl 98.5 3.4E-05 1.2E-09 77.9 25.3 111 344-481 345-475 (485)
43 2qzs_A Glycogen synthase; glyc 98.4 0.00018 6.2E-09 72.5 27.5 113 344-482 346-477 (485)
44 2xci_A KDO-transferase, 3-deox 98.3 0.00011 3.8E-09 71.5 23.2 98 346-454 261-364 (374)
45 2f9f_A First mannosyl transfer 98.3 3.9E-06 1.3E-10 72.4 11.5 130 280-436 24-163 (177)
46 3s28_A Sucrose synthase 1; gly 98.3 7.8E-05 2.7E-09 79.2 23.3 94 344-449 639-748 (816)
47 2hy7_A Glucuronosyltransferase 98.1 0.0003 1E-08 69.2 21.0 75 344-436 264-353 (406)
48 3qhp_A Type 1 capsular polysac 97.8 0.00025 8.4E-09 60.0 12.9 146 279-453 2-158 (166)
49 2bfw_A GLGA glycogen synthase; 97.6 0.0011 3.7E-08 57.9 14.4 92 346-450 96-196 (200)
50 3vue_A GBSS-I, granule-bound s 97.5 0.071 2.4E-06 54.2 27.7 84 344-434 381-476 (536)
51 4gyw_A UDP-N-acetylglucosamine 97.5 0.0027 9.4E-08 67.0 17.4 185 277-489 521-714 (723)
52 3tov_A Glycosyl transferase fa 97.5 0.011 3.8E-07 56.6 20.0 109 2-142 5-115 (349)
53 3q3e_A HMW1C-like glycosyltran 97.4 0.0021 7.1E-08 65.4 14.6 140 278-436 440-589 (631)
54 1psw_A ADP-heptose LPS heptosy 97.1 0.013 4.3E-07 56.1 15.5 105 6-142 1-106 (348)
55 3rhz_A GTF3, nucleotide sugar 96.9 0.0018 6.2E-08 61.7 7.8 95 346-454 215-321 (339)
56 2gt1_A Lipopolysaccharide hept 96.1 0.91 3.1E-05 42.5 21.6 48 6-53 1-48 (326)
57 2x0d_A WSAF; GT4 family, trans 94.6 0.12 4E-06 50.7 9.4 85 344-445 294-385 (413)
58 2wqk_A 5'-nucleotidase SURE; S 88.8 1.4 4.7E-05 39.5 8.1 112 6-145 2-127 (251)
59 2phj_A 5'-nucleotidase SURE; S 84.9 5.5 0.00019 35.4 9.6 114 6-146 2-128 (251)
60 1uqt_A Alpha, alpha-trehalose- 83.7 9.7 0.00033 37.7 12.1 109 347-481 333-454 (482)
61 3t5t_A Putative glycosyltransf 81.2 11 0.00037 37.4 11.1 112 346-481 353-473 (496)
62 3zqu_A Probable aromatic acid 80.8 2.2 7.4E-05 37.0 5.2 48 1-52 1-48 (209)
63 2e6c_A 5'-nucleotidase SURE; S 76.9 19 0.00066 31.8 10.3 101 22-145 16-129 (244)
64 1g5t_A COB(I)alamin adenosyltr 76.3 19 0.00064 30.7 9.7 37 6-44 29-65 (196)
65 3lqk_A Dipicolinate synthase s 76.2 3 0.0001 35.9 4.7 48 1-51 3-51 (201)
66 1j9j_A Stationary phase surviV 76.0 14 0.00047 32.8 9.1 100 22-145 16-128 (247)
67 3ty2_A 5'-nucleotidase SURE; s 75.7 4.7 0.00016 36.0 6.0 42 5-50 11-52 (261)
68 3io3_A DEHA2D07832P; chaperone 75.6 4.6 0.00016 38.1 6.3 40 5-46 17-59 (348)
69 3nb0_A Glycogen [starch] synth 75.5 6.3 0.00021 40.7 7.5 35 356-392 513-551 (725)
70 3iqw_A Tail-anchored protein t 74.3 9.9 0.00034 35.6 8.2 39 6-46 16-55 (334)
71 3dfz_A SIRC, precorrin-2 dehyd 73.8 9.7 0.00033 33.2 7.5 150 278-457 32-187 (223)
72 2iz6_A Molybdenum cofactor car 72.9 27 0.00093 29.1 9.8 79 347-434 91-173 (176)
73 1l5x_A SurviVal protein E; str 72.7 17 0.00058 32.9 9.0 99 22-146 16-128 (280)
74 3qjg_A Epidermin biosynthesis 72.4 5.2 0.00018 33.5 5.2 46 4-52 4-49 (175)
75 2bw0_A 10-FTHFDH, 10-formyltet 71.0 16 0.00055 34.0 8.8 102 4-147 21-131 (329)
76 3vot_A L-amino acid ligase, BL 70.6 12 0.00041 36.2 8.3 37 1-44 1-37 (425)
77 3auf_A Glycinamide ribonucleot 69.7 30 0.001 30.2 9.8 107 4-146 21-132 (229)
78 2x0d_A WSAF; GT4 family, trans 69.6 2.5 8.6E-05 41.0 3.1 39 4-44 45-88 (413)
79 1ccw_A Protein (glutamate muta 69.2 5.6 0.00019 31.7 4.5 38 4-43 2-39 (137)
80 3pdi_B Nitrogenase MOFE cofact 66.9 19 0.00066 35.3 8.8 34 102-143 366-399 (458)
81 3mcu_A Dipicolinate synthase, 66.1 6 0.00021 34.1 4.4 47 1-50 1-48 (207)
82 2v4n_A Multifunctional protein 65.9 16 0.00054 32.5 7.2 43 6-52 2-44 (254)
83 3q0i_A Methionyl-tRNA formyltr 64.2 55 0.0019 30.2 10.8 34 4-44 6-39 (318)
84 3tqq_A Methionyl-tRNA formyltr 61.9 43 0.0015 30.8 9.7 33 5-44 2-34 (314)
85 2ywr_A Phosphoribosylglycinami 61.5 30 0.001 29.9 8.1 103 6-146 2-111 (216)
86 1sbz_A Probable aromatic acid 60.7 10 0.00035 32.4 4.8 44 6-52 1-45 (197)
87 3av3_A Phosphoribosylglycinami 60.7 54 0.0018 28.2 9.6 104 5-146 3-113 (212)
88 4a1f_A DNAB helicase, replicat 60.6 13 0.00044 34.8 5.9 41 8-50 49-89 (338)
89 2pn1_A Carbamoylphosphate synt 60.1 31 0.0011 31.8 8.6 35 3-44 2-37 (331)
90 1g63_A Epidermin modifying enz 60.0 9.4 0.00032 32.1 4.4 44 6-52 3-46 (181)
91 4dim_A Phosphoribosylglycinami 59.3 31 0.001 32.9 8.7 34 4-44 6-39 (403)
92 2ejb_A Probable aromatic acid 58.9 14 0.00046 31.4 5.2 44 6-52 2-45 (189)
93 4ds3_A Phosphoribosylglycinami 58.8 44 0.0015 28.7 8.5 108 3-146 5-117 (209)
94 1fmt_A Methionyl-tRNA FMet for 57.2 66 0.0022 29.6 10.0 34 4-44 2-35 (314)
95 3tqr_A Phosphoribosylglycinami 57.0 37 0.0013 29.3 7.8 109 1-146 1-114 (215)
96 1mvl_A PPC decarboxylase athal 57.0 17 0.00057 31.3 5.5 44 5-52 19-62 (209)
97 1kjn_A MTH0777; hypotethical p 56.8 19 0.00066 28.8 5.3 49 4-54 5-55 (157)
98 2gwr_A DNA-binding response re 56.6 69 0.0024 27.5 9.9 37 1-43 1-37 (238)
99 3igf_A ALL4481 protein; two-do 55.6 16 0.00053 34.8 5.6 36 6-43 2-38 (374)
100 2yxb_A Coenzyme B12-dependent 54.7 12 0.00041 30.7 4.1 39 4-44 17-55 (161)
101 1id1_A Putative potassium chan 53.6 8.9 0.0003 30.9 3.2 35 3-44 1-35 (153)
102 4dzz_A Plasmid partitioning pr 53.4 59 0.002 27.1 8.7 36 7-44 3-39 (206)
103 1p3y_1 MRSD protein; flavoprot 51.6 11 0.00039 32.0 3.5 45 5-52 8-52 (194)
104 1y80_A Predicted cobalamin bin 51.5 19 0.00064 31.0 5.1 39 5-45 88-126 (210)
105 3rfo_A Methionyl-tRNA formyltr 50.8 1.5E+02 0.0051 27.2 11.3 34 4-44 3-36 (317)
106 3mc3_A DSRE/DSRF-like family p 50.7 31 0.001 27.1 5.8 45 5-51 15-62 (134)
107 1kjq_A GART 2, phosphoribosylg 50.6 73 0.0025 30.0 9.7 38 1-45 7-44 (391)
108 2qyt_A 2-dehydropantoate 2-red 49.9 9.1 0.00031 35.2 3.0 37 1-44 4-46 (317)
109 1qzu_A Hypothetical protein MD 47.6 22 0.00074 30.6 4.7 49 2-52 16-64 (206)
110 3kcq_A Phosphoribosylglycinami 47.3 1.2E+02 0.0039 26.1 9.4 102 4-146 7-113 (215)
111 3qxc_A Dethiobiotin synthetase 46.9 1.5E+02 0.005 26.0 10.7 34 7-42 23-57 (242)
112 3u7q_A Nitrogenase molybdenum- 46.8 46 0.0016 32.9 7.6 35 101-143 407-441 (492)
113 2q6t_A DNAB replication FORK h 46.7 46 0.0016 32.3 7.6 41 7-48 202-242 (444)
114 3da8_A Probable 5'-phosphoribo 46.7 22 0.00074 30.8 4.6 106 4-146 11-120 (215)
115 3pdi_A Nitrogenase MOFE cofact 46.5 33 0.0011 33.8 6.6 35 101-143 391-425 (483)
116 2pju_A Propionate catabolism o 46.2 36 0.0012 29.7 6.0 67 364-435 64-153 (225)
117 2i2x_B MTAC, methyltransferase 46.1 23 0.00079 31.6 4.9 38 4-43 122-159 (258)
118 1jkx_A GART;, phosphoribosylgl 45.6 98 0.0034 26.5 8.7 105 6-146 1-110 (212)
119 3nrc_A Enoyl-[acyl-carrier-pro 45.3 71 0.0024 28.5 8.3 38 1-45 21-62 (280)
120 3ouz_A Biotin carboxylase; str 45.0 45 0.0015 32.3 7.3 35 3-44 4-38 (446)
121 2i2c_A Probable inorganic poly 44.7 16 0.00056 32.9 3.7 53 364-436 36-94 (272)
122 3lyh_A Cobalamin (vitamin B12) 43.7 98 0.0034 23.7 7.8 37 278-314 6-42 (126)
123 1pjq_A CYSG, siroheme synthase 43.1 1.4E+02 0.005 28.9 10.6 150 278-457 13-169 (457)
124 3tov_A Glycosyl transferase fa 41.2 1E+02 0.0034 28.7 8.8 45 6-52 186-234 (349)
125 3bgw_A DNAB-like replicative h 41.1 45 0.0015 32.4 6.5 40 7-48 199-238 (444)
126 2qs7_A Uncharacterized protein 40.0 39 0.0013 26.9 4.9 44 7-52 10-53 (144)
127 2q5c_A NTRC family transcripti 39.7 31 0.0011 29.3 4.5 31 362-393 50-80 (196)
128 3n7t_A Macrophage binding prot 39.5 51 0.0017 29.1 6.0 38 5-44 9-57 (247)
129 3ezx_A MMCP 1, monomethylamine 39.5 38 0.0013 29.2 5.1 38 5-44 92-129 (215)
130 3u7q_B Nitrogenase molybdenum- 39.3 1.8E+02 0.0061 28.9 10.6 35 101-143 428-469 (523)
131 1yt5_A Inorganic polyphosphate 38.8 19 0.00066 32.1 3.2 53 364-436 42-97 (258)
132 3k96_A Glycerol-3-phosphate de 38.6 17 0.00057 34.3 2.9 37 1-44 25-61 (356)
133 2yvq_A Carbamoyl-phosphate syn 38.1 63 0.0021 25.7 5.9 97 9-143 27-131 (143)
134 2ixd_A LMBE-related protein; h 38.0 93 0.0032 27.3 7.5 20 99-123 85-104 (242)
135 3s2u_A UDP-N-acetylglucosamine 38.0 54 0.0018 30.7 6.4 35 279-317 4-40 (365)
136 3g1w_A Sugar ABC transporter; 37.1 2.1E+02 0.0071 25.3 10.2 29 117-145 62-94 (305)
137 2vqe_B 30S ribosomal protein S 36.8 56 0.0019 29.0 5.7 32 115-146 157-190 (256)
138 2o6l_A UDP-glucuronosyltransfe 36.6 1.2E+02 0.0041 24.3 7.7 37 6-44 21-60 (170)
139 3to5_A CHEY homolog; alpha(5)b 36.4 52 0.0018 25.8 5.1 42 101-147 47-97 (134)
140 3dfu_A Uncharacterized protein 36.2 30 0.001 30.3 3.9 37 1-44 2-38 (232)
141 4egb_A DTDP-glucose 4,6-dehydr 36.1 2.5E+02 0.0084 25.5 10.8 34 4-43 23-58 (346)
142 1rcu_A Conserved hypothetical 35.4 1.8E+02 0.006 24.5 8.5 97 265-390 47-149 (195)
143 1meo_A Phosophoribosylglycinam 34.9 1.5E+02 0.005 25.3 8.0 103 6-146 1-110 (209)
144 3ghy_A Ketopantoate reductase 34.9 32 0.0011 31.9 4.2 41 5-52 3-43 (335)
145 2hy5_B Intracellular sulfur ox 34.9 66 0.0023 25.3 5.4 50 1-52 1-53 (136)
146 2jzc_A UDP-N-acetylglucosamine 34.9 1.2E+02 0.004 26.3 7.5 39 6-46 28-73 (224)
147 3rg8_A Phosphoribosylaminoimid 34.7 1.8E+02 0.0062 23.5 8.5 139 279-457 3-150 (159)
148 1psw_A ADP-heptose LPS heptosy 34.6 2.6E+02 0.009 25.3 11.2 44 6-51 181-229 (348)
149 3hn2_A 2-dehydropantoate 2-red 34.6 47 0.0016 30.4 5.3 39 6-52 3-41 (312)
150 2a3d_A Protein (de novo three- 34.1 89 0.0031 20.0 4.7 45 439-491 4-51 (73)
151 3hn7_A UDP-N-acetylmuramate-L- 33.9 1.9E+02 0.0064 28.7 9.9 33 5-43 19-51 (524)
152 4e5s_A MCCFLIKE protein (BA_56 33.8 57 0.0019 30.3 5.6 26 292-317 63-88 (331)
153 3l4e_A Uncharacterized peptida 33.7 1.3E+02 0.0043 25.6 7.5 48 266-313 16-63 (206)
154 3lrx_A Putative hydrogenase; a 33.6 35 0.0012 27.7 3.7 36 5-45 23-58 (158)
155 1f0y_A HCDH, L-3-hydroxyacyl-C 33.5 32 0.0011 31.3 3.9 36 1-43 11-46 (302)
156 3kkl_A Probable chaperone prot 33.2 59 0.002 28.6 5.4 40 1-44 1-51 (244)
157 3llv_A Exopolyphosphatase-rela 33.1 22 0.00076 27.9 2.4 33 5-44 6-38 (141)
158 3lyu_A Putative hydrogenase; t 32.4 43 0.0015 26.5 4.0 36 5-45 18-53 (142)
159 3mjf_A Phosphoribosylamine--gl 32.2 1E+02 0.0036 29.6 7.5 26 4-36 2-27 (431)
160 2qk4_A Trifunctional purine bi 32.1 2.8E+02 0.0095 26.6 10.7 34 4-43 23-56 (452)
161 2dwc_A PH0318, 433AA long hypo 31.9 2.5E+02 0.0086 26.7 10.3 34 5-45 19-52 (433)
162 1qgu_B Protein (nitrogenase mo 31.3 2.9E+02 0.0098 27.3 10.6 34 102-143 425-465 (519)
163 2bln_A Protein YFBG; transfera 31.1 1.6E+02 0.0056 26.7 8.2 40 102-146 66-106 (305)
164 2vou_A 2,6-dihydroxypyridine h 31.0 40 0.0014 32.0 4.2 35 1-42 1-35 (397)
165 4b4o_A Epimerase family protei 31.0 36 0.0012 30.7 3.8 32 6-43 1-32 (298)
166 1wcv_1 SOJ, segregation protei 30.3 44 0.0015 29.5 4.1 42 1-44 1-44 (257)
167 3qvl_A Putative hydantoin race 30.3 2.7E+02 0.0094 24.2 10.4 37 6-44 2-39 (245)
168 1jx7_A Hypothetical protein YC 30.2 83 0.0028 23.5 5.3 35 16-52 15-51 (117)
169 3i83_A 2-dehydropantoate 2-red 29.9 46 0.0016 30.6 4.3 39 6-52 3-41 (320)
170 2r8r_A Sensor protein; KDPD, P 29.6 64 0.0022 28.1 4.8 38 5-44 6-43 (228)
171 3g0o_A 3-hydroxyisobutyrate de 29.2 36 0.0012 31.0 3.4 33 4-43 6-38 (303)
172 3ic5_A Putative saccharopine d 29.2 54 0.0018 24.3 4.0 34 4-44 4-38 (118)
173 2lpm_A Two-component response 29.0 34 0.0011 26.5 2.7 28 117-144 54-86 (123)
174 3l7i_A Teichoic acid biosynthe 28.9 63 0.0022 33.7 5.6 119 349-483 603-723 (729)
175 1p9o_A Phosphopantothenoylcyst 28.6 34 0.0012 31.5 3.1 35 8-44 40-88 (313)
176 2fb6_A Conserved hypothetical 28.3 69 0.0024 24.4 4.4 44 5-50 7-54 (117)
177 1o97_C Electron transferring f 27.9 83 0.0029 28.0 5.5 41 101-146 102-148 (264)
178 4hps_A Pyrrolidone-carboxylate 27.9 72 0.0025 27.8 4.8 27 5-31 23-51 (228)
179 3afo_A NADH kinase POS5; alpha 27.4 47 0.0016 31.6 3.9 61 354-436 107-172 (388)
180 3ro0_A Pyrrolidone-carboxylate 27.4 79 0.0027 27.4 5.0 27 5-31 2-30 (223)
181 3q2i_A Dehydrogenase; rossmann 27.3 3.6E+02 0.012 24.7 10.3 127 279-436 15-151 (354)
182 1lss_A TRK system potassium up 27.3 45 0.0016 25.7 3.3 32 5-43 4-35 (140)
183 3s40_A Diacylglycerol kinase; 27.1 1.6E+02 0.0054 26.7 7.4 28 364-391 64-97 (304)
184 3c24_A Putative oxidoreductase 27.1 55 0.0019 29.4 4.3 33 4-43 10-43 (286)
185 1ydh_A AT5G11950; structural g 27.0 1.2E+02 0.004 26.1 6.0 44 347-391 89-143 (216)
186 3dhn_A NAD-dependent epimerase 26.9 68 0.0023 27.2 4.7 37 1-44 1-37 (227)
187 3eag_A UDP-N-acetylmuramate:L- 26.9 67 0.0023 29.6 4.9 34 4-43 3-36 (326)
188 3giu_A Pyrrolidone-carboxylate 26.8 64 0.0022 27.8 4.3 28 4-31 2-31 (215)
189 2vo1_A CTP synthase 1; pyrimid 26.7 56 0.0019 29.2 3.9 41 3-45 20-63 (295)
190 3hwr_A 2-dehydropantoate 2-red 26.6 46 0.0016 30.6 3.6 42 4-52 18-59 (318)
191 3gpi_A NAD-dependent epimerase 26.3 35 0.0012 30.5 2.8 33 5-44 3-35 (286)
192 1z82_A Glycerol-3-phosphate de 26.2 50 0.0017 30.6 3.9 33 4-43 13-45 (335)
193 2dzd_A Pyruvate carboxylase; b 26.2 1.4E+02 0.0047 28.9 7.3 38 1-45 1-39 (461)
194 3qha_A Putative oxidoreductase 26.1 37 0.0013 30.8 2.9 32 5-43 15-46 (296)
195 3cky_A 2-hydroxymethyl glutara 26.1 58 0.002 29.4 4.3 35 1-43 1-35 (301)
196 2ew2_A 2-dehydropantoate 2-red 26.0 48 0.0016 30.1 3.7 33 4-43 2-34 (316)
197 1efv_B Electron transfer flavo 25.7 1E+02 0.0035 27.3 5.6 41 101-146 106-152 (255)
198 3goc_A Endonuclease V; alpha-b 25.7 82 0.0028 27.5 4.7 41 101-144 95-142 (237)
199 4gbj_A 6-phosphogluconate dehy 25.7 56 0.0019 29.7 4.0 30 6-42 6-35 (297)
200 1efp_B ETF, protein (electron 25.4 1E+02 0.0035 27.2 5.5 41 101-146 103-149 (252)
201 2xvy_A Chelatase, putative; me 25.3 1.7E+02 0.0059 25.8 7.3 39 278-316 10-50 (269)
202 3qrx_B Melittin; calcium-bindi 25.3 18 0.0006 18.8 0.3 17 372-388 1-17 (26)
203 3pnx_A Putative sulfurtransfer 25.3 1.6E+02 0.0055 23.9 6.3 43 8-52 8-50 (160)
204 3fwz_A Inner membrane protein 25.1 43 0.0015 26.2 2.8 34 4-44 6-39 (140)
205 1rw7_A YDR533CP; alpha-beta sa 25.0 1.2E+02 0.0039 26.5 5.9 37 6-44 4-51 (243)
206 3obi_A Formyltetrahydrofolate 24.9 3.7E+02 0.013 24.1 9.3 108 2-146 86-197 (288)
207 4h1h_A LMO1638 protein; MCCF-l 24.8 92 0.0031 28.8 5.3 26 292-317 63-88 (327)
208 2zki_A 199AA long hypothetical 24.7 69 0.0024 26.7 4.2 39 1-43 1-40 (199)
209 1bg6_A N-(1-D-carboxylethyl)-L 24.7 47 0.0016 30.9 3.4 33 4-43 3-35 (359)
210 1zl0_A Hypothetical protein PA 24.7 1.1E+02 0.0037 28.1 5.7 74 291-392 64-139 (311)
211 2w36_A Endonuclease V; hypoxan 24.6 68 0.0023 27.8 4.0 41 101-144 91-138 (225)
212 2gt1_A Lipopolysaccharide hept 24.6 3E+02 0.01 24.8 9.0 43 6-50 179-226 (326)
213 1ehi_A LMDDL2, D-alanine:D-lac 24.5 64 0.0022 30.4 4.4 37 4-42 2-43 (377)
214 2q5c_A NTRC family transcripti 24.4 61 0.0021 27.4 3.7 42 101-147 129-170 (196)
215 4ezb_A Uncharacterized conserv 24.2 43 0.0015 30.8 2.9 33 4-43 23-56 (317)
216 4gmf_A Yersiniabactin biosynth 24.1 1.7E+02 0.006 27.4 7.3 129 274-432 4-141 (372)
217 2r85_A PURP protein PF1517; AT 24.1 61 0.0021 29.6 4.1 34 5-46 2-35 (334)
218 2lnd_A De novo designed protei 24.1 81 0.0028 21.9 3.5 48 382-434 50-100 (112)
219 2w70_A Biotin carboxylase; lig 24.0 1.5E+02 0.0051 28.5 7.0 32 5-43 2-33 (449)
220 4g6h_A Rotenone-insensitive NA 23.9 46 0.0016 32.9 3.3 34 4-44 41-74 (502)
221 3sr3_A Microcin immunity prote 23.7 94 0.0032 28.8 5.2 26 292-317 64-89 (336)
222 2g1u_A Hypothetical protein TM 23.2 99 0.0034 24.5 4.7 33 5-44 19-51 (155)
223 3tsa_A SPNG, NDP-rhamnosyltran 23.2 98 0.0034 28.9 5.4 29 361-391 114-143 (391)
224 4h3k_B RNA polymerase II subun 23.0 3.5E+02 0.012 22.9 8.8 38 2-44 22-59 (214)
225 3ia7_A CALG4; glycosysltransfe 22.9 2.5E+02 0.0084 26.0 8.3 35 279-315 6-40 (402)
226 2hy5_A Putative sulfurtransfer 22.9 1.8E+02 0.006 22.4 6.0 42 9-52 5-49 (130)
227 2an1_A Putative kinase; struct 22.9 43 0.0015 30.4 2.6 26 365-390 65-94 (292)
228 3euw_A MYO-inositol dehydrogen 22.9 4.1E+02 0.014 24.2 9.7 109 279-414 6-123 (344)
229 2p90_A Hypothetical protein CG 22.8 4.4E+02 0.015 24.1 10.5 38 278-316 102-140 (319)
230 2a33_A Hypothetical protein; s 22.8 2.7E+02 0.0091 23.8 7.5 45 347-391 93-147 (215)
231 2a5l_A Trp repressor binding p 22.8 1E+02 0.0034 25.6 4.9 36 6-43 6-42 (200)
232 1u0t_A Inorganic polyphosphate 22.7 80 0.0027 28.8 4.5 39 1-42 1-40 (307)
233 3tl4_X Glutaminyl-tRNA synthet 22.5 82 0.0028 26.4 4.0 27 402-436 107-133 (187)
234 4hcj_A THIJ/PFPI domain protei 22.4 85 0.0029 25.9 4.2 41 1-44 4-44 (177)
235 4fu0_A D-alanine--D-alanine li 22.2 53 0.0018 30.7 3.2 38 3-42 1-42 (357)
236 2rdm_A Response regulator rece 22.2 1.5E+02 0.0051 22.0 5.5 37 1-43 1-37 (132)
237 3m6m_D Sensory/regulatory prot 22.2 87 0.003 24.1 4.1 31 117-147 59-100 (143)
238 3e18_A Oxidoreductase; dehydro 22.0 3.2E+02 0.011 25.2 8.7 127 279-436 7-141 (359)
239 3zzm_A Bifunctional purine bio 21.9 1.4E+02 0.0048 29.3 6.0 44 5-55 9-52 (523)
240 3sz8_A 2-dehydro-3-deoxyphosph 21.8 4.4E+02 0.015 23.6 11.5 18 299-316 126-143 (285)
241 3kjh_A CO dehydrogenase/acetyl 21.7 72 0.0025 27.5 3.9 37 6-44 1-37 (254)
242 1hjr_A Holliday junction resol 21.6 1.3E+02 0.0044 24.4 5.0 46 97-147 45-105 (158)
243 1u0t_A Inorganic polyphosphate 21.6 41 0.0014 30.8 2.2 52 365-436 77-132 (307)
244 3h75_A Periplasmic sugar-bindi 21.5 2.7E+02 0.0092 25.3 8.1 30 117-146 63-95 (350)
245 3bul_A Methionine synthase; tr 21.3 98 0.0033 31.2 5.0 39 5-45 98-136 (579)
246 2ehd_A Oxidoreductase, oxidore 21.2 69 0.0024 27.5 3.6 37 1-43 1-37 (234)
247 3obb_A Probable 3-hydroxyisobu 21.1 85 0.0029 28.5 4.3 31 5-42 3-33 (300)
248 3ius_A Uncharacterized conserv 21.0 60 0.0021 28.8 3.3 51 4-66 4-55 (286)
249 3db2_A Putative NADPH-dependen 20.8 3.4E+02 0.012 24.9 8.6 127 279-436 7-142 (354)
250 1qyd_A Pinoresinol-lariciresin 20.6 78 0.0027 28.5 4.0 36 1-44 1-37 (313)
251 3qsg_A NAD-binding phosphogluc 20.5 58 0.002 29.8 3.0 33 4-43 23-56 (312)
252 3h4t_A Glycosyltransferase GTF 20.5 2.4E+02 0.0082 26.5 7.6 35 280-316 3-37 (404)
253 4huj_A Uncharacterized protein 20.4 49 0.0017 28.4 2.4 33 3-42 21-53 (220)
254 2d1p_B TUSC, hypothetical UPF0 20.3 2.1E+02 0.0071 21.6 5.8 44 7-52 4-49 (119)
255 3lk7_A UDP-N-acetylmuramoylala 20.2 1.7E+02 0.0058 28.3 6.5 32 5-43 9-40 (451)
256 3ga2_A Endonuclease V; alpha-b 20.1 1E+02 0.0035 27.1 4.2 41 101-144 97-144 (246)
No 1
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=100.00 E-value=1.8e-68 Score=533.16 Aligned_cols=432 Identities=26% Similarity=0.405 Sum_probs=352.0
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCC--eEEEEEeCccchhhhhccCCC-CCCceEEeccCCCCCCCCCCCCCCC
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKN--YSITFVSTPLNIKKLKSSLPP-NSSIDLHEIPFNSSSHGLPPNSENC 81 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~G--h~Vt~~~~~~~~~~v~~~~~~-~~~i~~~~i~~~~~~~~l~~~~~~~ 81 (493)
+.||+++|+|++||++|+++||+.|++ +| +.|||++++.+...+.+.... ..+++|+.++ +++|++.+..
T Consensus 13 ~~hvv~~P~p~~GHi~P~l~Lak~L~~--~g~~~~vT~~~t~~~~~~~~~~~~~~~~~i~~~~ip-----dglp~~~~~~ 85 (454)
T 3hbf_A 13 LLHVAVLAFPFGTHAAPLLSLVKKIAT--EAPKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYNVH-----DGLPKGYVSS 85 (454)
T ss_dssp CCEEEEECCCSSSSHHHHHHHHHHHHH--HCTTSEEEEEECHHHHHHSCSSSSCCCTTEEEEECC-----CCCCTTCCCC
T ss_pred CCEEEEEcCCcccHHHHHHHHHHHHHh--CCCCEEEEEEeCHHHHHhhhcccccCCCCceEEecC-----CCCCCCcccc
Confidence 679999999999999999999999999 99 999999998776666543211 1579999998 6888876554
Q ss_pred CCCChhhHHHHHHHH-hhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhccc
Q 011106 82 DVLPYNLVIHLLRAS-TSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTN 160 (493)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~ 160 (493)
.+ +...+..+.... ..+.+.+.+++++. +.++|+||+|.+.+|+..+|+++|||++.|++++++.+..+++.+..
T Consensus 86 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~~~~~~ 161 (454)
T 3hbf_A 86 GN-PREPIFLFIKAMQENFKHVIDEAVAET---GKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLI 161 (454)
T ss_dssp SC-TTHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCEEEEETTCTTHHHHHHHTTCEEEEEECSCHHHHHHHHTHHHH
T ss_pred CC-hHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCcEEEECCcchHHHHHHHHhCCCEEEEeCccHHHHHHHHhhHHH
Confidence 44 333334444433 22333344433332 35699999999999999999999999999999999988877765432
Q ss_pred CCCC----CCCCCcc-cCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHH
Q 011106 161 LPHN----KVTSDEF-VLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKR 235 (493)
Q Consensus 161 ~p~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~ 235 (493)
.... ....... .+|+++. ++.++++.++.. .....+..++.+..+...+++++++|||++||+++++.+++
T Consensus 162 ~~~~~~~~~~~~~~~~~iPg~p~---~~~~dlp~~~~~-~~~~~~~~~~~~~~~~~~~~~~vl~ns~~eLE~~~~~~~~~ 237 (454)
T 3hbf_A 162 REKTGSKEVHDVKSIDVLPGFPE---LKASDLPEGVIK-DIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNS 237 (454)
T ss_dssp HHTCCHHHHTTSSCBCCSTTSCC---BCGGGSCTTSSS-CTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHT
T ss_pred HhhcCCCccccccccccCCCCCC---cChhhCchhhcc-CCchHHHHHHHHHHHhhccCCEEEECChhHhCHHHHHHHHh
Confidence 1110 0111223 4888886 888899887654 33445667777777788889999999999999999999988
Q ss_pred hcCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEc
Q 011106 236 KLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVR 315 (493)
Q Consensus 236 ~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~ 315 (493)
.+ +++++|||++...... ....++++.+||+.++++++|||||||+...+.+++.+++.+++.++++|||+++
T Consensus 238 ~~-~~v~~vGPl~~~~~~~------~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~~~ 310 (454)
T 3hbf_A 238 KF-KLLLNVGPFNLTTPQR------KVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFR 310 (454)
T ss_dssp TS-SCEEECCCHHHHSCCS------CCCCTTCHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEECC
T ss_pred cC-CCEEEECCcccccccc------cccchHHHHHHHhcCCCCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEEeC
Confidence 76 6999999998653110 1234578999999988899999999999998999999999999999999999998
Q ss_pred CCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccc
Q 011106 316 PPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQ 395 (493)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ 395 (493)
.+. . +.+|+++.++. ++|+++++|+||.++|+|+++++|||||||||++|++++|||||++|++.||
T Consensus 311 ~~~-------~---~~lp~~~~~~~---~~~~~vv~w~Pq~~vL~h~~v~~fvtH~G~~S~~Eal~~GvP~i~~P~~~DQ 377 (454)
T 3hbf_A 311 GDP-------K---EKLPKGFLERT---KTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQ 377 (454)
T ss_dssp SCH-------H---HHSCTTHHHHT---TTTEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTH
T ss_pred Ccc-------h---hcCCHhHHhhc---CCceEEEeeCCHHHHHhhcCcCeEEecCCcchHHHHHHcCCCEecCcccccH
Confidence 641 1 23788887765 5788888999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHH
Q 011106 396 FFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFL 475 (493)
Q Consensus 396 ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~ 475 (493)
+.||+++++.||+|+.++. ..++.++|.++|+++|+++ +|++||+||+++++.+++++ .+||||.+++++|+
T Consensus 378 ~~Na~~v~~~~g~Gv~l~~---~~~~~~~l~~av~~ll~~~-~~~~~r~~a~~l~~~~~~a~----~~gGsS~~~l~~~v 449 (454)
T 3hbf_A 378 GLNTILTESVLEIGVGVDN---GVLTKESIKKALELTMSSE-KGGIMRQKIVKLKESAFKAV----EQNGTSAMDFTTLI 449 (454)
T ss_dssp HHHHHHHHTTSCSEEECGG---GSCCHHHHHHHHHHHHSSH-HHHHHHHHHHHHHHHHHHHT----STTSHHHHHHHHHH
T ss_pred HHHHHHHHHhhCeeEEecC---CCCCHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHHHHHhh----ccCCCHHHHHHHHH
Confidence 9999999976899999987 7899999999999999875 78899999999999999999 99999999999999
Q ss_pred HHHH
Q 011106 476 SAAI 479 (493)
Q Consensus 476 ~~~~ 479 (493)
+++.
T Consensus 450 ~~i~ 453 (454)
T 3hbf_A 450 QIVT 453 (454)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9874
No 2
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=100.00 E-value=2.1e-62 Score=499.63 Aligned_cols=446 Identities=25% Similarity=0.456 Sum_probs=332.5
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCC-----CCCceEEeccCCCCCCCCCCCCC
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPP-----NSSIDLHEIPFNSSSHGLPPNSE 79 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~-----~~~i~~~~i~~~~~~~~l~~~~~ 79 (493)
++||+++|+|++||++|++.||+.|++ +||+|||++++.+...+.+.... ..+++|+.++ ++++....
T Consensus 8 ~~~vl~~p~p~~GHi~P~l~La~~L~~--rG~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~-----~~lp~~~~ 80 (482)
T 2pq6_A 8 KPHVVMIPYPVQGHINPLFKLAKLLHL--RGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIP-----DGLTPMEG 80 (482)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHH--TTCEEEEEEEHHHHHHHC------------CEEEEEEC-----CCCC----
T ss_pred CCEEEEecCccchhHHHHHHHHHHHHh--CCCeEEEEeCCchhhhhccccccccccCCCceEEEECC-----CCCCCccc
Confidence 569999999999999999999999999 99999999999877666543110 0378999888 35554110
Q ss_pred CCCCCChhhHHHHHHHH-hhhhHHHHHHHHHhhcC--CCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhh
Q 011106 80 NCDVLPYNLVIHLLRAS-TSLKPAFKEVISSLINQ--GRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYS 156 (493)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~--~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~ 156 (493)
.. ... ..+..+...+ ..+.+.++++++++..+ ..+||+||+|.+..|+..+|+.+|||++.+++++++....+.+
T Consensus 81 ~~-~~~-~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~ 158 (482)
T 2pq6_A 81 DG-DVS-QDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMH 158 (482)
T ss_dssp -------CCHHHHHHHHTTSSHHHHHHHHHHHHTCSSSCCCCEEEEETTCTHHHHHHHHTTCCEEEEECSCHHHHHHHTT
T ss_pred cc-Ccc-hhHHHHHHHHHHHhhHHHHHHHHHHhhhccCCCceEEEECCcchhHHHHHHHcCCCEEEEecccHHHHHHHHH
Confidence 00 001 1123344444 56778888888887532 3579999999999999999999999999999998876654432
Q ss_pred hc-----ccCCCCCCC--C----Cc--ccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEecccc
Q 011106 157 FW-----TNLPHNKVT--S----DE--FVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIE 223 (493)
Q Consensus 157 ~~-----~~~p~~~~~--~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~ 223 (493)
.+ .+.|..... . +. ..+|+++. ++..+++.++........+...+....+...+++++++|+++
T Consensus 159 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~nt~~ 235 (482)
T 2pq6_A 159 FRSFVERGIIPFKDESYLTNGCLETKVDWIPGLKN---FRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFN 235 (482)
T ss_dssp HHHHHHTTCSSCSSGGGGTSSGGGCBCCSSTTCCS---CBGGGSCGGGCCSCTTCHHHHHHHHHHHTCCTTCCEEESSCG
T ss_pred HHHHHhcCCCCCccccccccccccCccccCCCCCC---CchHHCchhhccCCcccHHHHHHHHHHHhhccCCEEEEcChH
Confidence 21 233432111 0 11 12344443 445555544433222233444444444556678899999999
Q ss_pred ccchhHHHHHHHhcCCceeeccccccc-ccc--cc---ccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHH
Q 011106 224 EFDQIGFIYLKRKLGLSVWPVGPILLS-LEN--RA---NAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMM 297 (493)
Q Consensus 224 ~le~~~~~~~~~~~~~~~~~vGpl~~~-~~~--~~---~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~ 297 (493)
+||+++++.+++.+ +++++|||++.. ... .+ ......++.+.++.+||++++++++|||||||+...+.+++.
T Consensus 236 ~le~~~~~~~~~~~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wld~~~~~~vv~vs~GS~~~~~~~~~~ 314 (482)
T 2pq6_A 236 ELESDVINALSSTI-PSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLL 314 (482)
T ss_dssp GGGHHHHHHHHTTC-TTEEECCCHHHHHHTSTTGGGGCC---------CHHHHHHTTSCTTCEEEEECCSSSCCCHHHHH
T ss_pred HHhHHHHHHHHHhC-CcEEEEcCCcccccccccccccccccccccccchHHHHHHhcCCCCceEEEecCCcccCCHHHHH
Confidence 99999999999887 789999999864 211 00 000111234557899999987789999999999888888899
Q ss_pred HHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHH
Q 011106 298 QLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVL 377 (493)
Q Consensus 298 ~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~ 377 (493)
.++.+|+.++++|||+++.+. ..+. . ..+|+++.++. ++|+++++|+||.++|+|+++++|||||||||++
T Consensus 315 ~~~~~l~~~~~~~l~~~~~~~----~~~~-~-~~l~~~~~~~~---~~~~~v~~~~pq~~~L~h~~~~~~vth~G~~s~~ 385 (482)
T 2pq6_A 315 EFAWGLANCKKSFLWIIRPDL----VIGG-S-VIFSSEFTNEI---ADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTT 385 (482)
T ss_dssp HHHHHHHHTTCEEEEECCGGG----STTT-G-GGSCHHHHHHH---TTTEEEESCCCHHHHHTSTTEEEEEECCCHHHHH
T ss_pred HHHHHHHhcCCcEEEEEcCCc----cccc-c-ccCcHhHHHhc---CCCEEEEeecCHHHHhcCCCCCEEEecCCcchHH
Confidence 999999999999999997531 0000 0 12777776665 5789999999999999999999999999999999
Q ss_pred HHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q 011106 378 EALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAM 457 (493)
Q Consensus 378 eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~ 457 (493)
|++++|||||++|++.||+.||+++++.+|+|+.++. .+++++|.++|+++|+|+ ++++||+||+++++.+++|+
T Consensus 386 Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~----~~~~~~l~~~i~~ll~~~-~~~~~r~~a~~l~~~~~~a~ 460 (482)
T 2pq6_A 386 ESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDT----NVKREELAKLINEVIAGD-KGKKMKQKAMELKKKAEENT 460 (482)
T ss_dssp HHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECCS----SCCHHHHHHHHHHHHTSH-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEECC----CCCHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999755599999863 699999999999999988 47789999999999999999
Q ss_pred hccccCCCChHHHHHHHHHHHHhh
Q 011106 458 KDEEGCRGSSVKAMDDFLSAAISM 481 (493)
Q Consensus 458 ~~~~~~~g~~~~~~~~~~~~~~~~ 481 (493)
.+|||+.+++++|++++++.
T Consensus 461 ----~~gGss~~~l~~~v~~~~~~ 480 (482)
T 2pq6_A 461 ----RPGGCSYMNLNKVIKDVLLK 480 (482)
T ss_dssp ----STTCHHHHHHHHHHHHTTCC
T ss_pred ----hcCCcHHHHHHHHHHHHHhc
Confidence 99999999999999998554
No 3
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=100.00 E-value=2.5e-61 Score=489.90 Aligned_cols=451 Identities=28% Similarity=0.465 Sum_probs=329.0
Q ss_pred CCCC-CcEEEEECCCCcccHHHHHHHHHHHHhcCC-CeEEEEEeCcc--chhhhhccCCC-CCCceEEeccCCCCCCCCC
Q 011106 1 MAQS-KENIVMFPFMAQGHIIPFLALALHIEQRHK-NYSITFVSTPL--NIKKLKSSLPP-NSSIDLHEIPFNSSSHGLP 75 (493)
Q Consensus 1 m~~~-~~~il~~~~~~~GH~~p~l~LA~~L~~~~~-Gh~Vt~~~~~~--~~~~v~~~~~~-~~~i~~~~i~~~~~~~~l~ 75 (493)
|+.+ ++||+++|+|++||++|+++||+.|++ + ||+|||++++. +...+.+.... ..+++|+.++... ++
T Consensus 1 M~~~~~~~vl~~p~p~~GHv~P~l~La~~L~~--r~Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~----~~ 74 (480)
T 2vch_A 1 MEESKTPHVAIIPSPGMGHLIPLVEFAKRLVH--LHGLTVTFVIAGEGPPSKAQRTVLDSLPSSISSVFLPPVD----LT 74 (480)
T ss_dssp -----CCEEEEECCSCHHHHHHHHHHHHHHHH--HHCCEEEEEECCSSSCC-CHHHHHC-CCTTEEEEECCCCC----CT
T ss_pred CCCCCCcEEEEecCcchhHHHHHHHHHHHHHh--CCCCEEEEEECCCcchhhhhhhhccccCCCceEEEcCCCC----CC
Confidence 6643 479999999999999999999999999 8 99999999887 34444431100 0578999988531 11
Q ss_pred CCCCCCCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCC-cEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHH
Q 011106 76 PNSENCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPP-LCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACY 154 (493)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~p-DlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~ 154 (493)
.. . . .......+......+.+.++++++++. +..++ |+||+|.+..|+..+|+.+|||++.+++++++....+
T Consensus 75 ~~-~--~--~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~~~pd~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~ 148 (480)
T 2vch_A 75 DL-S--S--STRIESRISLTVTRSNPELRKVFDSFV-EGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFF 148 (480)
T ss_dssp TS-C--T--TCCHHHHHHHHHHTTHHHHHHHHHHHH-HTTCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHHHHHH
T ss_pred CC-C--C--chhHHHHHHHHHHhhhHHHHHHHHHhc-cCCCCCeEEEECCcchhHHHHHHHcCCCEEEEECccHHHHHHH
Confidence 11 1 1 111223344555677788888888763 12347 9999999999999999999999999999988766554
Q ss_pred hhhcc---cCCCCCCC-CCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHH
Q 011106 155 YSFWT---NLPHNKVT-SDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGF 230 (493)
Q Consensus 155 ~~~~~---~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~ 230 (493)
++.+. ..+....+ .....+|++++ +...+++..+... .......+.+......+..++++|++.+|+++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~Pg~~p---~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~nt~~ele~~~~ 223 (480)
T 2vch_A 149 LHLPKLDETVSCEFRELTEPLMLPGCVP---VAGKDFLDPAQDR--KDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAI 223 (480)
T ss_dssp HHHHHHHHHCCSCGGGCSSCBCCTTCCC---BCGGGSCGGGSCT--TSHHHHHHHHHHHHGGGCSEEEESCCTTTSHHHH
T ss_pred HHHHHHHhcCCCcccccCCcccCCCCCC---CChHHCchhhhcC--CchHHHHHHHHHHhcccCCEEEEcCHHHHhHHHH
Confidence 43221 11110000 11234556554 5555555443221 1223344444445556778889999999999887
Q ss_pred HHHHHhc--CCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCC
Q 011106 231 IYLKRKL--GLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGK 308 (493)
Q Consensus 231 ~~~~~~~--~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~ 308 (493)
..+.+.. .+++++|||++...... ..+..++++.+||++++++++|||||||+...+.+++.+++.+++.+++
T Consensus 224 ~~l~~~~~~~~~v~~vGpl~~~~~~~-----~~~~~~~~~~~wLd~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~ 298 (480)
T 2vch_A 224 KALQEPGLDKPPVYPVGPLVNIGKQE-----AKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQ 298 (480)
T ss_dssp HHHHSCCTTCCCEEECCCCCCCSCSC-----C-----CHHHHHHHTSCTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcccCCCcEEEEeccccccccc-----cCccchhHHHHHhcCCCCCceEEEecccccCCCHHHHHHHHHHHHhcCC
Confidence 7776421 26899999998653100 0123567899999998778999999999998889999999999999999
Q ss_pred cEEEEEcCCCCC------CCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHh
Q 011106 309 NFIWVVRPPIGF------DINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIH 382 (493)
Q Consensus 309 ~vi~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~ 382 (493)
+|||+++..... +...+......+|+++.++++ ..++++.+|+||.+||+|+++++|||||||||++||+++
T Consensus 299 ~~lw~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~g~~v~~w~Pq~~vL~h~~v~~fvtHgG~~S~~Eal~~ 376 (480)
T 2vch_A 299 RFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTK--KRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVS 376 (480)
T ss_dssp EEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHHTT--TTEEEEESCCCHHHHHHSTTEEEEEECCCHHHHHHHHHH
T ss_pred cEEEEECCccccccccccccccccchhhhcCHHHHHHhC--CCeEEEeCccCHHHHhCCCCcCeEEecccchhHHHHHHc
Confidence 999999864200 000000000237888888876 677777679999999999999999999999999999999
Q ss_pred CCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhcccc
Q 011106 383 GVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEG 462 (493)
Q Consensus 383 GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~ 462 (493)
|||||++|++.||+.||+++++.+|+|+.++..++..+++++|+++|+++|+++ ++++||+||+++++++++++ .
T Consensus 377 GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~~~~l~~av~~vl~~~-~~~~~r~~a~~l~~~~~~a~----~ 451 (480)
T 2vch_A 377 GIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGE-EGKGVRNKMKELKEAACRVL----K 451 (480)
T ss_dssp TCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCCHHHHHHHHHHHHTST-HHHHHHHHHHHHHHHHHHHT----S
T ss_pred CCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccCHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHH----h
Confidence 999999999999999999984456999999762223799999999999999865 56699999999999999999 9
Q ss_pred CCCChHHHHHHHHHHHHh
Q 011106 463 CRGSSVKAMDDFLSAAIS 480 (493)
Q Consensus 463 ~~g~~~~~~~~~~~~~~~ 480 (493)
+|||+.+++++|++.+++
T Consensus 452 ~gGss~~~~~~~v~~~~~ 469 (480)
T 2vch_A 452 DDGTSTKALSLVALKWKA 469 (480)
T ss_dssp TTSHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999999876
No 4
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=100.00 E-value=3.7e-60 Score=478.24 Aligned_cols=438 Identities=25% Similarity=0.407 Sum_probs=323.9
Q ss_pred CCC--CCcEEEEECCCCcccHHHHHHHHHHHHhcCCC--eEEEEEeCccchhhhhccCCC--CCCceEEeccCCCCCCCC
Q 011106 1 MAQ--SKENIVMFPFMAQGHIIPFLALALHIEQRHKN--YSITFVSTPLNIKKLKSSLPP--NSSIDLHEIPFNSSSHGL 74 (493)
Q Consensus 1 m~~--~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~G--h~Vt~~~~~~~~~~v~~~~~~--~~~i~~~~i~~~~~~~~l 74 (493)
|++ +++||+++|+|++||++|+++||+.|++ +| +.|||++++.+...+.+...+ ..+++|+.++ +++
T Consensus 1 m~~~~~~~hvv~~p~p~~GHi~P~l~la~~L~~--rGh~v~vt~~~t~~~~~~~~~~~~~~~~~~i~~~~i~-----~gl 73 (456)
T 2c1x_A 1 MSQTTTNPHVAVLAFPFSTHAAPLLAVVRRLAA--AAPHAVFSFFSTSQSNASIFHDSMHTMQCNIKSYDIS-----DGV 73 (456)
T ss_dssp ------CCEEEEECCCSSSSHHHHHHHHHHHHH--HCTTSEEEEEECHHHHHHHC-------CTTEEEEECC-----CCC
T ss_pred CCCCCCCCEEEEEcCcccchHHHHHHHHHHHHh--CCCCeEEEEEeCchhHHHhhccccccCCCceEEEeCC-----CCC
Confidence 554 3679999999999999999999999999 75 567889887655544332111 0478898887 456
Q ss_pred CCCCCCCCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcC-CCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHH
Q 011106 75 PPNSENCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQ-GRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLAC 153 (493)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~ 153 (493)
+++.+.. ..+...+..+.... ...++++++++..+ +.+||+||+|.+..|+..+|+.+|||++.+++++++.+..
T Consensus 74 p~~~~~~-~~~~~~~~~~~~~~---~~~~~~~l~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~ 149 (456)
T 2c1x_A 74 PEGYVFA-GRPQEDIELFTRAA---PESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLST 149 (456)
T ss_dssp CTTCCCC-CCTTHHHHHHHHHH---HHHHHHHHHHHHHHHTCCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHHH
T ss_pred CCccccc-CChHHHHHHHHHHh---HHHHHHHHHHHHhccCCCceEEEECCchHhHHHHHHHhCCCEEEEeCccHHHHHH
Confidence 6554321 12333333343333 23333444332111 2469999999999999999999999999999998776654
Q ss_pred Hhhhcc-----cCCCC-CCCCCc-ccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccc
Q 011106 154 YYSFWT-----NLPHN-KVTSDE-FVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFD 226 (493)
Q Consensus 154 ~~~~~~-----~~p~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le 226 (493)
+++... ..+.. ...... ..+|+++. ++..+++..+........+...+.+......+++++++|++++||
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~---~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~~le 226 (456)
T 2c1x_A 150 HVYIDEIREKIGVSGIQGREDELLNFIPGMSK---VRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELD 226 (456)
T ss_dssp HHTHHHHHHHHCSSCCTTCTTCBCTTSTTCTT---CBGGGSCTTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGC
T ss_pred HhhhHHHHhccCCcccccccccccccCCCCCc---ccHHhCchhhcCCCcccHHHHHHHHHHHhhhhCCEEEECChHHHh
Confidence 332110 11110 001111 23566665 566666654332222223334444444455678889999999999
Q ss_pred hhHHHHHHHhcCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhC
Q 011106 227 QIGFIYLKRKLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEAS 306 (493)
Q Consensus 227 ~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~ 306 (493)
+++++.+++.+ +++++|||+....... .++.+.++.+||+.++++++|||||||+.....+++..++.+++.+
T Consensus 227 ~~~~~~~~~~~-~~~~~vGpl~~~~~~~------~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~ 299 (456)
T 2c1x_A 227 DSLTNDLKSKL-KTYLNIGPFNLITPPP------VVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEAS 299 (456)
T ss_dssp HHHHHHHHHHS-SCEEECCCHHHHC---------------CHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCEEEecCcccCcccc------cccchhhHHHHHhcCCCcceEEEecCccccCCHHHHHHHHHHHHhc
Confidence 99888888877 6899999998643110 1122356899999887789999999999988889999999999999
Q ss_pred CCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcE
Q 011106 307 GKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPI 386 (493)
Q Consensus 307 ~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~ 386 (493)
+++|||+++.+. . ..+|+++.++. ++|+++++|+||.++|+|+++++|||||||||++|++++||||
T Consensus 300 ~~~~lw~~~~~~-------~---~~l~~~~~~~~---~~~~~v~~w~pq~~vL~h~~~~~fvth~G~~S~~Eal~~GvP~ 366 (456)
T 2c1x_A 300 RVPFIWSLRDKA-------R---VHLPEGFLEKT---RGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPL 366 (456)
T ss_dssp TCCEEEECCGGG-------G---GGSCTTHHHHH---TTTEEEESCCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCE
T ss_pred CCeEEEEECCcc-------h---hhCCHHHHhhc---CCceEEecCCCHHHHhcCCcCCEEEecCCcchHHHHHHhCceE
Confidence 999999997541 1 23777776654 5789999999999999999999999999999999999999999
Q ss_pred ecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCC
Q 011106 387 IGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGS 466 (493)
Q Consensus 387 l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~ 466 (493)
|++|++.||+.||+++++.||+|+.++. ..++.++|.++|+++|+|+ +|++||+||+++++.+++++ .+|||
T Consensus 367 i~~P~~~dQ~~Na~~l~~~~g~g~~l~~---~~~~~~~l~~~i~~ll~~~-~~~~~r~~a~~l~~~~~~a~----~~gGs 438 (456)
T 2c1x_A 367 ICRPFFGDQRLNGRMVEDVLEIGVRIEG---GVFTKSGLMSCFDQILSQE-KGKKLRENLRALRETADRAV----GPKGS 438 (456)
T ss_dssp EECCCSTTHHHHHHHHHHTSCCEEECGG---GSCCHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHT----STTCH
T ss_pred EecCChhhHHHHHHHHHHHhCeEEEecC---CCcCHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHhh----hcCCc
Confidence 9999999999999999988899999987 7899999999999999987 47789999999999999999 99999
Q ss_pred hHHHHHHHHHHHHh
Q 011106 467 SVKAMDDFLSAAIS 480 (493)
Q Consensus 467 ~~~~~~~~~~~~~~ 480 (493)
|.+++++|++.+.+
T Consensus 439 S~~~l~~~v~~~~~ 452 (456)
T 2c1x_A 439 STENFITLVDLVSK 452 (456)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999854
No 5
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=100.00 E-value=1.3e-59 Score=475.58 Aligned_cols=436 Identities=27% Similarity=0.415 Sum_probs=325.8
Q ss_pred CCCC----CcEEEEECCCCcccHHHHHHHHHHHHhcCC--CeEEEEEeCccch-----hhhhccCCCCCCceEEeccCCC
Q 011106 1 MAQS----KENIVMFPFMAQGHIIPFLALALHIEQRHK--NYSITFVSTPLNI-----KKLKSSLPPNSSIDLHEIPFNS 69 (493)
Q Consensus 1 m~~~----~~~il~~~~~~~GH~~p~l~LA~~L~~~~~--Gh~Vt~~~~~~~~-----~~v~~~~~~~~~i~~~~i~~~~ 69 (493)
|+|+ ++||+++|+|++||++|+++||+.|++ + ||+|||++++.+. ..+.+......+++|+.++..
T Consensus 1 ~~~~~~~~~~~vv~~p~p~~GHi~P~l~La~~L~~--r~pG~~Vt~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~- 77 (463)
T 2acv_A 1 MSMSDINKNSELIFIPAPGIGHLASALEFAKLLTN--HDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQLIDLPEV- 77 (463)
T ss_dssp --CHHHHHCEEEEEECCSSTTTHHHHHHHHHHHHH--TCTTEEEEEEECCCTTCCCCHHHHHHHHCSCTTEEEEECCCC-
T ss_pred CCcccCCCCCEEEEEcCcccchHHHHHHHHHHHHh--cCCCcEEEEEEcCCcchhhhhhhhhhcccCCCCceEEECCCC-
Confidence 6653 469999999999999999999999999 8 9999999988752 223221000157899999843
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHH
Q 011106 70 SSHGLPPNSENCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSY 149 (493)
Q Consensus 70 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~ 149 (493)
.++. .+... .... . +...+....+.++++++++ ...+||+||+|.++.|+..+|+.+|||++.+++++++
T Consensus 78 ---~~~~-~~~~~--~~~~-~-~~~~~~~~~~~~~~ll~~~--~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~ 147 (463)
T 2acv_A 78 ---EPPP-QELLK--SPEF-Y-ILTFLESLIPHVKATIKTI--LSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVG 147 (463)
T ss_dssp ---CCCC-GGGGG--SHHH-H-HHHHHHHTHHHHHHHHHHH--CCTTEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHH
T ss_pred ---CCCc-ccccC--CccH-H-HHHHHHhhhHHHHHHHHhc--cCCCCeEEEECCcchhHHHHHHHcCCCEEEEeCchHH
Confidence 1222 11001 1111 1 5555567777888998875 2345999999999999999999999999999999887
Q ss_pred HHHHHhhhcccC-CCCCCC-CC---cccCCCC-CcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEecccc
Q 011106 150 GLACYYSFWTNL-PHNKVT-SD---EFVLPDF-EEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIE 223 (493)
Q Consensus 150 ~~~~~~~~~~~~-p~~~~~-~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~ 223 (493)
.+..+++.+... ...... .. ...+|++ +. ++..+++..+... ......+.+.......+.++++|+|.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~---~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~nt~~ 221 (463)
T 2acv_A 148 FLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISNQ---VPSNVLPDACFNK---DGGYIAYYKLAERFRDTKGIIVNTFS 221 (463)
T ss_dssp HHHHHHHGGGSCTTCCCCCSSGGGCEECCTTCSSC---EEGGGSCHHHHCT---TTHHHHHHHHHHHHTTSSEEEESCCH
T ss_pred HHHHHHHHHhhcccCCCCCccccCceeECCCCCCC---CChHHCchhhcCC---chHHHHHHHHHHhcccCCEEEECCHH
Confidence 766655443321 000001 11 3345666 44 5555555444322 22444444444555677888999999
Q ss_pred ccchhHHHHHHHhc--CCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCc-CCCHHHHHHHH
Q 011106 224 EFDQIGFIYLKRKL--GLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMN-TISASQMMQLA 300 (493)
Q Consensus 224 ~le~~~~~~~~~~~--~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~-~~~~~~~~~i~ 300 (493)
+||++.++.+.+.. ++++++|||+........ ....+..+.++.+||+.++++++|||||||+. ....+++.+++
T Consensus 222 ele~~~~~~l~~~~~p~~~v~~vGpl~~~~~~~~--~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~ 299 (463)
T 2acv_A 222 DLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPN--PKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIA 299 (463)
T ss_dssp HHHHHHHHHHHHHCTTSCCEEECCCCCCSSCCCB--TTBCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCHHHHHHHH
T ss_pred HHhHHHHHHHHhccccCCcEEEeCCCcccccccc--cccccccchhHHHHHhcCCCCceEEEEeccccccCCHHHHHHHH
Confidence 99999888777755 679999999986431000 00001345789999999888899999999999 78888999999
Q ss_pred HHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHh--ccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHH
Q 011106 301 MALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERI--RDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLE 378 (493)
Q Consensus 301 ~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~e 378 (493)
.+|+.++++|||+++.+. ..+|+++.++. . +++++++|+||.++|+|+++++|||||||||++|
T Consensus 300 ~~l~~~~~~~l~~~~~~~-----------~~l~~~~~~~~~~~---~~~~v~~w~pq~~vL~h~~~~~fvth~G~~s~~E 365 (463)
T 2acv_A 300 LGLKHSGVRFLWSNSAEK-----------KVFPEGFLEWMELE---GKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILE 365 (463)
T ss_dssp HHHHHHTCEEEEECCCCG-----------GGSCTTHHHHHHHH---CSEEEESSCCHHHHHHSTTEEEEEECCCHHHHHH
T ss_pred HHHHhCCCcEEEEECCCc-----------ccCChhHHHhhccC---CCEEEEccCCHHHHhCCCccCeEEecCCchhHHH
Confidence 999999999999998531 12677776554 3 4778889999999999999999999999999999
Q ss_pred HHHhCCcEecccccccchhhHHHHhhhhceeEEe-ecCCCC--ccCHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHH
Q 011106 379 ALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEV-ARGKTC--EVKHEDVVAKIELVMN-ETDKGKEIRRKVSEVREMIK 454 (493)
Q Consensus 379 al~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~-~~~~~~--~~~~~~l~~ai~~~l~-~~~~~~~~~~~a~~l~~~~~ 454 (493)
++++|||||++|++.||+.||+++++.+|+|+.+ ...+.. .++.++|.++|+++|+ ++ +||+||+++++.++
T Consensus 366 al~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~~~~~~~~~~~l~~ai~~ll~~~~----~~r~~a~~l~~~~~ 441 (463)
T 2acv_A 366 SMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDS----IVHKKVQEMKEMSR 441 (463)
T ss_dssp HHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCCTTCCCCCHHHHHHHHHHHTCTTC----THHHHHHHHHHHHH
T ss_pred HHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccCCCCccccHHHHHHHHHHHHhccH----HHHHHHHHHHHHHH
Confidence 9999999999999999999999963255999999 311114 6899999999999997 35 79999999999999
Q ss_pred HhhhccccCCCChHHHHHHHHHHHH
Q 011106 455 NAMKDEEGCRGSSVKAMDDFLSAAI 479 (493)
Q Consensus 455 ~~~~~~~~~~g~~~~~~~~~~~~~~ 479 (493)
+|+ .+||||.+++++|+++++
T Consensus 442 ~a~----~~gGss~~~l~~~v~~~~ 462 (463)
T 2acv_A 442 NAV----VDGGSSLISVGKLIDDIT 462 (463)
T ss_dssp HHT----STTSHHHHHHHHHHHHHH
T ss_pred HHH----hcCCcHHHHHHHHHHHhc
Confidence 999 999999999999999875
No 6
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=100.00 E-value=5.5e-45 Score=366.89 Aligned_cols=398 Identities=18% Similarity=0.188 Sum_probs=270.9
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCC---
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSEN--- 80 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~--- 80 (493)
+++||+|+++++.||++|+++||++|++ +||+|+|++++.+.+.+.+ .+++|+.++. .++.....
T Consensus 11 ~~~~Il~~~~~~~GHv~p~l~la~~L~~--~Gh~V~~~~~~~~~~~~~~-----~g~~~~~~~~-----~~~~~~~~~~~ 78 (424)
T 2iya_A 11 TPRHISFFNIPGHGHVNPSLGIVQELVA--RGHRVSYAITDEFAAQVKA-----AGATPVVYDS-----ILPKESNPEES 78 (424)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHH--TTCEEEEEECGGGHHHHHH-----HTCEEEECCC-----CSCCTTCTTCC
T ss_pred ccceEEEEeCCCCcccchHHHHHHHHHH--CCCeEEEEeCHHHHHHHHh-----CCCEEEecCc-----cccccccchhh
Confidence 3579999999999999999999999999 9999999999998888887 4668887773 22322111
Q ss_pred CCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhccc
Q 011106 81 CDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTN 160 (493)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~ 160 (493)
........+..+..........+.+++++.+ ||+||+|.+..|+..+|+.+|||++.+++.+.........+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----pD~VI~d~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~ 153 (424)
T 2iya_A 79 WPEDQESAMGLFLDEAVRVLPQLEDAYADDR-----PDLIVYDIASWPAPVLGRKWDIPFVQLSPTFVAYEGFEEDVPAV 153 (424)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHTTTSC-----CSEEEEETTCTHHHHHHHHHTCCEEEEESSCCCCTTHHHHSGGG
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhccC-----CCEEEEcCcccHHHHHHHhcCCCEEEEecccccccccccccccc
Confidence 0111111222233333444555666665554 99999999888899999999999999987654111110000000
Q ss_pred CCCCCCCCCcccCC-CC--Cccccc--Ch-----hhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHH
Q 011106 161 LPHNKVTSDEFVLP-DF--EEASRI--HK-----SQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGF 230 (493)
Q Consensus 161 ~p~~~~~~~~~~~~-~~--~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~ 230 (493)
.+.....+.....| +. ...... .. ..+..++.......... ......+.++++++++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------~~~~~~~~~l~~~~~~l~~~-- 224 (424)
T 2iya_A 154 QDPTADRGEEAAAPAGTGDAEEGAEAEDGLVRFFTRLSAFLEEHGVDTPAT-------EFLIAPNRCIVALPRTFQIK-- 224 (424)
T ss_dssp SCCCC---------------------HHHHHHHHHHHHHHHHHTTCCSCHH-------HHHHCCSSEEESSCTTTSTT--
T ss_pred cccccccccccccccccccchhhhccchhHHHHHHHHHHHHHHcCCCCCHH-------HhccCCCcEEEEcchhhCCC--
Confidence 00000000000000 00 000000 00 01111111111000000 01113456788888888864
Q ss_pred HHHHHhcCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcE
Q 011106 231 IYLKRKLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNF 310 (493)
Q Consensus 231 ~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~v 310 (493)
...+++++++|||++.... ...+|++..+++++|||++||......+.+..++++++..+.++
T Consensus 225 ---~~~~~~~~~~vGp~~~~~~--------------~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~ 287 (424)
T 2iya_A 225 ---GDTVGDNYTFVGPTYGDRS--------------HQGTWEGPGDGRPVLLIALGSAFTDHLDFYRTCLSAVDGLDWHV 287 (424)
T ss_dssp ---GGGCCTTEEECCCCCCCCG--------------GGCCCCCCCSSCCEEEEECCSSSCCCHHHHHHHHHHHTTCSSEE
T ss_pred ---ccCCCCCEEEeCCCCCCcc--------------cCCCCCccCCCCCEEEEEcCCCCcchHHHHHHHHHHHhcCCcEE
Confidence 2457789999999764321 12357765556789999999998666788889999999888999
Q ss_pred EEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEeccc
Q 011106 311 IWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWP 390 (493)
Q Consensus 311 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P 390 (493)
+|.++... +. +.+. . . ++|+++.+|+||.++|+++++ ||||||+||++||+++|+|+|++|
T Consensus 288 ~~~~g~~~------~~---~~~~-~-----~--~~~v~~~~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~p 348 (424)
T 2iya_A 288 VLSVGRFV------DP---ADLG-E-----V--PPNVEVHQWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVP 348 (424)
T ss_dssp EEECCTTS------CG---GGGC-S-----C--CTTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHTTCCEEECC
T ss_pred EEEECCcC------Ch---HHhc-c-----C--CCCeEEecCCCHHHHHhhCCE--EEECCchhHHHHHHHcCCCEEEec
Confidence 99987542 00 0011 0 1 679999999999999999886 999999999999999999999999
Q ss_pred ccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHH
Q 011106 391 MAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKA 470 (493)
Q Consensus 391 ~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~ 470 (493)
...||+.||+++++. |+|+.+.. ..+++++|.++|+++|+|+ +++++++++++.++ ..+| ..++
T Consensus 349 ~~~dQ~~na~~l~~~-g~g~~~~~---~~~~~~~l~~~i~~ll~~~----~~~~~~~~~~~~~~-------~~~~-~~~~ 412 (424)
T 2iya_A 349 QIAEQTMNAERIVEL-GLGRHIPR---DQVTAEKLREAVLAVASDP----GVAERLAAVRQEIR-------EAGG-ARAA 412 (424)
T ss_dssp CSHHHHHHHHHHHHT-TSEEECCG---GGCCHHHHHHHHHHHHHCH----HHHHHHHHHHHHHH-------TSCH-HHHH
T ss_pred CccchHHHHHHHHHC-CCEEEcCc---CCCCHHHHHHHHHHHHcCH----HHHHHHHHHHHHHH-------hcCc-HHHH
Confidence 999999999999965 99999987 7799999999999999998 89999999999997 5555 6677
Q ss_pred HHHHHHHHH
Q 011106 471 MDDFLSAAI 479 (493)
Q Consensus 471 ~~~~~~~~~ 479 (493)
++.|.+.++
T Consensus 413 ~~~i~~~~~ 421 (424)
T 2iya_A 413 ADILEGILA 421 (424)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777666543
No 7
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=100.00 E-value=1.1e-43 Score=354.79 Aligned_cols=364 Identities=13% Similarity=0.140 Sum_probs=232.8
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCC--CCCCCCCC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHG--LPPNSENC 81 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~--l~~~~~~~ 81 (493)
+.|||+|+++|+.||++|+++||++|++ +||+|||++++.+..... .++.+..+........ .+......
T Consensus 21 ~~MRIL~~~~p~~GHv~P~l~LA~~L~~--rGh~Vt~~t~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~ 92 (400)
T 4amg_A 21 QSMRALFITSPGLSHILPTVPLAQALRA--LGHEVRYATGGDIRAVAE------AGLCAVDVSPGVNYAKLFVPDDTDVT 92 (400)
T ss_dssp CCCEEEEECCSSHHHHGGGHHHHHHHHH--TTCEEEEEECSSTHHHHT------TTCEEEESSTTCCSHHHHSCCC----
T ss_pred CCCeEEEECCCchhHHHHHHHHHHHHHH--CCCEEEEEeCcchhhHHh------cCCeeEecCCchhHhhhccccccccc
Confidence 3579999999999999999999999999 999999999988776544 3556666543211100 00000000
Q ss_pred -----CCCChh-hHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHh
Q 011106 82 -----DVLPYN-LVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYY 155 (493)
Q Consensus 82 -----~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~ 155 (493)
...... ....+..........+.+++++.+ ||+||+|.+..++..+|+.+|||++.+...+........
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----pD~Vv~d~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~ 167 (400)
T 4amg_A 93 DPMHSEGLGEGFFAEMFARVSAVAVDGALRTARSWR-----PDLVVHTPTQGAGPLTAAALQLPCVELPLGPADSEPGLG 167 (400)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CSEEEECTTCTHHHHHHHHTTCCEEECCSSTTTCCHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCEEEECcchHHHHHHHHHcCCCceeecccccccccchh
Confidence 001111 112233333455667777888888 999999999999999999999999987654322111000
Q ss_pred hhcccCCCCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHH
Q 011106 156 SFWTNLPHNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKR 235 (493)
Q Consensus 156 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~ 235 (493)
. .....+.... .+................ +.......+
T Consensus 168 ~-------------------------~~~~~l~~~~-------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 205 (400)
T 4amg_A 168 A-------------------------LIRRAMSKDY-------------ERHGVTGEPTGSVRLTTT----PPSVEALLP 205 (400)
T ss_dssp H-------------------------HHHHHTHHHH-------------HHTTCCCCCSCEEEEECC----CHHHHHTSC
T ss_pred h-------------------------HHHHHHHHHH-------------HHhCCCcccccchhhccc----CchhhccCc
Confidence 0 0000000000 000000000111111111 000000000
Q ss_pred --hcCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCC--HHHHHHHHHHHHhCCCcEE
Q 011106 236 --KLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTIS--ASQMMQLAMALEASGKNFI 311 (493)
Q Consensus 236 --~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~--~~~~~~i~~al~~~~~~vi 311 (493)
...+....+++... .....+.+|++..+++++|||||||+.... .+.+..++++++..+.+++
T Consensus 206 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v 272 (400)
T 4amg_A 206 EDRRSPGAWPMRYVPY-------------NGGAVLPDWLPPAAGRRRIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFV 272 (400)
T ss_dssp GGGCCTTCEECCCCCC-------------CCCEECCTTCSCCTTCCEEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEE
T ss_pred ccccCCcccCcccccc-------------cccccCcccccccCCCcEEEEeCCcccccCccHHHHHHHHHHhhccCceEE
Confidence 00011122222111 122334468888888899999999986543 3567889999999999999
Q ss_pred EEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccc
Q 011106 312 WVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPM 391 (493)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~ 391 (493)
|..+... ....... ++|+++.+|+||.++|+|+++ ||||||+||++||+++|||+|++|+
T Consensus 273 ~~~~~~~-----------~~~~~~~-------~~~v~~~~~~p~~~lL~~~~~--~v~h~G~~s~~Eal~~GvP~v~~P~ 332 (400)
T 4amg_A 273 LTLGGGD-----------LALLGEL-------PANVRVVEWIPLGALLETCDA--IIHHGGSGTLLTALAAGVPQCVIPH 332 (400)
T ss_dssp EECCTTC-----------CCCCCCC-------CTTEEEECCCCHHHHHTTCSE--EEECCCHHHHHHHHHHTCCEEECCC
T ss_pred EEecCcc-----------ccccccC-------CCCEEEEeecCHHHHhhhhhh--eeccCCccHHHHHHHhCCCEEEecC
Confidence 9987652 0011111 789999999999999999886 9999999999999999999999999
Q ss_pred cccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHH
Q 011106 392 AAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAM 471 (493)
Q Consensus 392 ~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~ 471 (493)
+.||+.||+++++. |+|+.++. ..++++ +|+++|+|+ +||++|++++++++ ...| ..+.+
T Consensus 333 ~~dQ~~na~~v~~~-G~g~~l~~---~~~~~~----al~~lL~d~----~~r~~a~~l~~~~~-------~~~~-~~~~a 392 (400)
T 4amg_A 333 GSYQDTNRDVLTGL-GIGFDAEA---GSLGAE----QCRRLLDDA----GLREAALRVRQEMS-------EMPP-PAETA 392 (400)
T ss_dssp ---CHHHHHHHHHH-TSEEECCT---TTCSHH----HHHHHHHCH----HHHHHHHHHHHHHH-------TSCC-HHHHH
T ss_pred cccHHHHHHHHHHC-CCEEEcCC---CCchHH----HHHHHHcCH----HHHHHHHHHHHHHH-------cCCC-HHHHH
Confidence 99999999999976 99999987 667665 567789999 99999999999998 5555 45555
Q ss_pred HHHH
Q 011106 472 DDFL 475 (493)
Q Consensus 472 ~~~~ 475 (493)
+.|.
T Consensus 393 ~~le 396 (400)
T 4amg_A 393 AXLV 396 (400)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 8
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=100.00 E-value=8e-42 Score=342.62 Aligned_cols=368 Identities=15% Similarity=0.111 Sum_probs=245.2
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCC
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLP 85 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~ 85 (493)
|||+|+++++.||++|+++||++|++ +||+|+|++++.+.+.+.. .+++|+.++... ...........
T Consensus 1 M~Il~~~~~~~GHv~P~l~la~~L~~--~Gh~V~~~~~~~~~~~v~~-----~g~~~~~i~~~~-----~~~~~~~~~~~ 68 (415)
T 1iir_A 1 MRVLLATCGSRGDTEPLVALAVRVRD--LGADVRMCAPPDCAERLAE-----VGVPHVPVGPSA-----RAPIQRAKPLT 68 (415)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHH--TTCEEEEEECGGGHHHHHH-----TTCCEEECCC------------CCSCCC
T ss_pred CeEEEEcCCCchhHHHHHHHHHHHHH--CCCeEEEEcCHHHHHHHHH-----cCCeeeeCCCCH-----HHHhhcccccc
Confidence 58999999999999999999999999 9999999999988887877 567888888431 11100101111
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECC-cchh--hHHHHHHcCCceEEEechhHHHHHHHhhhcccCC
Q 011106 86 YNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADI-FFGW--TCGVAKELNVFHAIFSGSGSYGLACYYSFWTNLP 162 (493)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~-~~~~--~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~p 162 (493)
...+..+... .....++++++. ..+||+||+|. +..+ +..+|+.+|||++.+++++..... .+.|
T Consensus 69 ~~~~~~~~~~--~~~~~~~~l~~~----~~~pD~vi~d~~~~~~~~~~~~A~~lgiP~v~~~~~~~~~~~------~~~p 136 (415)
T 1iir_A 69 AEDVRRFTTE--AIATQFDEIPAA----AEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPS------PYYP 136 (415)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHH----TTTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGGSCC------SSSC
T ss_pred hHHHHHHHHH--HHHHHHHHHHHH----hcCCCEEEECChhHhHhhHHHHHHHhCCCEEEEecCCCcCCC------cccC
Confidence 1111111110 111222333321 23599999997 6677 889999999999999877633211 1112
Q ss_pred CCCCCCCcccCCCC-Ccccc-cC-hhhchh--h------hhccCCCCchhhhhhccccccccCceEEeccccccch-hHH
Q 011106 163 HNKVTSDEFVLPDF-EEASR-IH-KSQLAL--N------MLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQ-IGF 230 (493)
Q Consensus 163 ~~~~~~~~~~~~~~-~~~~~-~~-~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~-~~~ 230 (493)
..... +.+++. ..+.. .. ...... + ........... ...+..... .+++++++.|++ +
T Consensus 137 ~~~~~---~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~-~~l~~~~~~l~~~~-- 206 (415)
T 1iir_A 137 PPPLG---EPSTQDTIDIPAQWERNNQSAYQRYGGLLNSHRDAIGLPPVE----DIFTFGYTD-HPWVAADPVLAPLQ-- 206 (415)
T ss_dssp CCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC----CHHHHHHCS-SCEECSCTTTSCCC--
T ss_pred CccCC---ccccchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCC----ccccccCCC-CEEEeeChhhcCCC--
Confidence 11100 111110 00000 00 000000 0 00000000000 000111123 578889988875 2
Q ss_pred HHHHHhcCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcE
Q 011106 231 IYLKRKLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNF 310 (493)
Q Consensus 231 ~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~v 310 (493)
+..+ ++++|||+.... .+..+.++.+|++.. +++|||++||+. ...+.+..++++++..+.++
T Consensus 207 ---~~~~--~~~~vG~~~~~~---------~~~~~~~~~~~l~~~--~~~v~v~~Gs~~-~~~~~~~~~~~al~~~~~~~ 269 (415)
T 1iir_A 207 ---PTDL--DAVQTGAWILPD---------ERPLSPELAAFLDAG--PPPVYLGFGSLG-APADAVRVAIDAIRAHGRRV 269 (415)
T ss_dssp ---CCSS--CCEECCCCCCCC---------CCCCCHHHHHHHHTS--SCCEEEECC----CCHHHHHHHHHHHHHTTCCE
T ss_pred ---cccC--CeEeeCCCccCc---------ccCCCHHHHHHHhhC--CCeEEEeCCCCC-CcHHHHHHHHHHHHHCCCeE
Confidence 1222 789999998654 234567899999765 469999999987 56788888999999999999
Q ss_pred EEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEeccc
Q 011106 311 IWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWP 390 (493)
Q Consensus 311 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P 390 (493)
+|+++... ..+ ... ++|+++.+|+||.++|+++++ ||||||+||++||+++|+|+|++|
T Consensus 270 v~~~g~~~-----------~~~-~~~-------~~~v~~~~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~p 328 (415)
T 1iir_A 270 ILSRGWAD-----------LVL-PDD-------GADCFAIGEVNHQVLFGRVAA--VIHHGGAGTTHVAARAGAPQILLP 328 (415)
T ss_dssp EECTTCTT-----------CCC-SSC-------GGGEEECSSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTCCEEECC
T ss_pred EEEeCCCc-----------ccc-cCC-------CCCEEEeCcCChHHHHhhCCE--EEeCCChhHHHHHHHcCCCEEECC
Confidence 99987542 001 001 568999999999999977665 999999999999999999999999
Q ss_pred ccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Q 011106 391 MAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIK 454 (493)
Q Consensus 391 ~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~ 454 (493)
+..||+.||+++++. |+|+.++. ..++.++|.++|+++ +|+ +++++++++++.++
T Consensus 329 ~~~dQ~~na~~l~~~-g~g~~~~~---~~~~~~~l~~~i~~l-~~~----~~~~~~~~~~~~~~ 383 (415)
T 1iir_A 329 QMADQPYYAGRVAEL-GVGVAHDG---PIPTFDSLSAALATA-LTP----ETHARATAVAGTIR 383 (415)
T ss_dssp CSTTHHHHHHHHHHH-TSEEECSS---SSCCHHHHHHHHHHH-TSH----HHHHHHHHHHHHSC
T ss_pred CCCccHHHHHHHHHC-CCcccCCc---CCCCHHHHHHHHHHH-cCH----HHHHHHHHHHHHHh
Confidence 999999999999866 99999987 778999999999999 888 89999999999885
No 9
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=100.00 E-value=4.7e-41 Score=337.21 Aligned_cols=383 Identities=15% Similarity=0.075 Sum_probs=256.2
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCC
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLP 85 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~ 85 (493)
|||+|+++++.||++|+++||++|++ +||+|+|++++.+.+.+.+ .+++++.++... .+.+.. . .....
T Consensus 1 MrIl~~~~~~~GH~~p~l~la~~L~~--~Gh~V~~~~~~~~~~~v~~-----~g~~~~~~~~~~-~~~~~~-~--~~~~~ 69 (416)
T 1rrv_A 1 MRVLLSVCGTRGDVEIGVALADRLKA--LGVQTRMCAPPAAEERLAE-----VGVPHVPVGLPQ-HMMLQE-G--MPPPP 69 (416)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHH--TTCEEEEEECGGGHHHHHH-----HTCCEEECSCCG-GGCCCT-T--SCCCC
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHH--CCCeEEEEeCHHHHHHHHH-----cCCeeeecCCCH-HHHHhh-c--cccch
Confidence 58999999999999999999999999 9999999999988888887 566888877431 011111 0 11111
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECC-cchh--hHHHHHHcCCceEEEechhHHHHHHHhhhcccCC
Q 011106 86 YNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADI-FFGW--TCGVAKELNVFHAIFSGSGSYGLACYYSFWTNLP 162 (493)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~-~~~~--~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~p 162 (493)
...+..+ +......+.+.+.+. ..+||+||+|. +.++ +..+|+.+|||++.+++++.+... .+.|
T Consensus 70 ~~~~~~~---~~~~~~~~~~~l~~~---~~~pD~vi~d~~~~~~~~~~~~A~~~giP~v~~~~~~~~~~~------~~~p 137 (416)
T 1rrv_A 70 PEEEQRL---AAMTVEMQFDAVPGA---AEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLAS------PHLP 137 (416)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHH---TTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCC------SSSC
T ss_pred hHHHHHH---HHHHHHHHHHHHHHH---hcCCCEEEEcCchHHHHHHHHHHHHcCCCEEEEeCCCCCCCC------cccC
Confidence 1111111 111112222222211 23499999996 4556 788999999999998877532211 1111
Q ss_pred CCCCCCCcccC-CCCCccccc-C-hhhch---------hhhhccCCCCchhhhhhccccccccCceEEeccccccchhHH
Q 011106 163 HNKVTSDEFVL-PDFEEASRI-H-KSQLA---------LNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGF 230 (493)
Q Consensus 163 ~~~~~~~~~~~-~~~~~~~~~-~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~ 230 (493)
... + +.+ +++..+... . ...+. .+...... .... ...+..... .+++++.+.|+++
T Consensus 138 -~~~-~--~~~~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~----~~~~~~~~~-~~l~~~~~~l~~~-- 205 (416)
T 1rrv_A 138 -PAY-D--EPTTPGVTDIRVLWEERAARFADRYGPTLNRRRAEIGL-PPVE----DVFGYGHGE-RPLLAADPVLAPL-- 205 (416)
T ss_dssp -CCB-C--SCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCS----CHHHHTTCS-SCEECSCTTTSCC--
T ss_pred -CCC-C--CCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCC-CCCC----chhhhccCC-CeEEccCccccCC--
Confidence 000 0 111 111110000 0 00000 00000000 0000 000111233 6788888888753
Q ss_pred HHHHHhcCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcC-CCHHHHHHHHHHHHhCCCc
Q 011106 231 IYLKRKLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNT-ISASQMMQLAMALEASGKN 309 (493)
Q Consensus 231 ~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~-~~~~~~~~i~~al~~~~~~ 309 (493)
+..+ ++++|||+.... .+..+.++.+|+++. +++|||++||+.. ...+.+..++++++..+.+
T Consensus 206 ---~~~~--~~~~vG~~~~~~---------~~~~~~~~~~~l~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~~~~ 269 (416)
T 1rrv_A 206 ---QPDV--DAVQTGAWLLSD---------ERPLPPELEAFLAAG--SPPVHIGFGSSSGRGIADAAKVAVEAIRAQGRR 269 (416)
T ss_dssp ---CSSC--CCEECCCCCCCC---------CCCCCHHHHHHHHSS--SCCEEECCTTCCSHHHHHHHHHHHHHHHHTTCC
T ss_pred ---CCCC--CeeeECCCccCc---------cCCCCHHHHHHHhcC--CCeEEEecCCCCccChHHHHHHHHHHHHHCCCe
Confidence 1122 789999998654 134567889999765 4689999999864 3456788899999999999
Q ss_pred EEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecc
Q 011106 310 FIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGW 389 (493)
Q Consensus 310 vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~ 389 (493)
|+|+++... ..+ .. . ++|+.+.+|+||.++|+++++ ||||||+||++||+++|+|+|++
T Consensus 270 ~v~~~g~~~-----------~~~-~~-----~--~~~v~~~~~~~~~~ll~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~ 328 (416)
T 1rrv_A 270 VILSRGWTE-----------LVL-PD-----D--RDDCFAIDEVNFQALFRRVAA--VIHHGSAGTEHVATRAGVPQLVI 328 (416)
T ss_dssp EEEECTTTT-----------CCC-SC-----C--CTTEEEESSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTCCEEEC
T ss_pred EEEEeCCcc-----------ccc-cC-----C--CCCEEEeccCChHHHhccCCE--EEecCChhHHHHHHHcCCCEEEc
Confidence 999987542 001 11 1 678999999999999987775 99999999999999999999999
Q ss_pred cccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHH
Q 011106 390 PMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVK 469 (493)
Q Consensus 390 P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~ 469 (493)
|+..||+.||+++++. |+|+.++. ..++.++|.++|+++ +|+ +|+++++++++.++ ..+| . +
T Consensus 329 p~~~dQ~~na~~l~~~-g~g~~~~~---~~~~~~~l~~~i~~l-~~~----~~~~~~~~~~~~~~-------~~~~-~-~ 390 (416)
T 1rrv_A 329 PRNTDQPYFAGRVAAL-GIGVAHDG---PTPTFESLSAALTTV-LAP----ETRARAEAVAGMVL-------TDGA-A-A 390 (416)
T ss_dssp CCSBTHHHHHHHHHHH-TSEEECSS---SCCCHHHHHHHHHHH-TSH----HHHHHHHHHTTTCC-------CCHH-H-H
T ss_pred cCCCCcHHHHHHHHHC-CCccCCCC---CCCCHHHHHHHHHHh-hCH----HHHHHHHHHHHHHh-------hcCc-H-H
Confidence 9999999999999976 99999987 779999999999999 888 89999999998886 4444 4 6
Q ss_pred HHHHHHHHH
Q 011106 470 AMDDFLSAA 478 (493)
Q Consensus 470 ~~~~~~~~~ 478 (493)
+++.+++.+
T Consensus 391 ~~~~i~e~~ 399 (416)
T 1rrv_A 391 AADLVLAAV 399 (416)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666662444
No 10
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=100.00 E-value=6.7e-41 Score=334.38 Aligned_cols=378 Identities=13% Similarity=0.078 Sum_probs=256.0
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCC
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLP 85 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~ 85 (493)
|||+|++.++.||++|++.||++|++ +||+|+|++++.+.+.++. .++.|..++..... + ..... ...
T Consensus 1 MrIli~~~gt~Ghv~p~~~La~~L~~--~Gh~V~v~~~~~~~~~v~~-----~g~~~~~l~~~~~~--~-~~~~~--~~~ 68 (404)
T 3h4t_A 1 MGVLITGCGSRGDTEPLVALAARLRE--LGADARMCLPPDYVERCAE-----VGVPMVPVGRAVRA--G-AREPG--ELP 68 (404)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHHH--TTCCEEEEECGGGHHHHHH-----TTCCEEECSSCSSG--G-GSCTT--CCC
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHH--CCCeEEEEeCHHHHHHHHH-----cCCceeecCCCHHH--H-hcccc--CCH
Confidence 58999999999999999999999999 9999999999999999988 56788888743111 0 00000 000
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhh---HHHHHHcCCceEEEechhHHHHHHHhhhcccCC
Q 011106 86 YNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWT---CGVAKELNVFHAIFSGSGSYGLACYYSFWTNLP 162 (493)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~---~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~p 162 (493)
......+...+......+.++++ +||+||+|.....+ ..+|+.+|||++.+...+.......+..
T Consensus 69 ~~~~~~~~~~~~~~~~~l~~~~~-------~pD~Vi~~~~~~~~~~a~~~A~~lgiP~v~~~~~p~~~~~~~~~~----- 136 (404)
T 3h4t_A 69 PGAAEVVTEVVAEWFDKVPAAIE-------GCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPSEQSQA----- 136 (404)
T ss_dssp TTCGGGHHHHHHHHHHHHHHHHT-------TCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGGGSCHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-------CCCEEEECCchhhhhhhhhHHhhcCCCEEEEEcCCccCCChhHHH-----
Confidence 00111222222223333333321 39999998654434 6899999999999877664211100000
Q ss_pred CCCCCCCcccCCCCCcccccChhhc----hhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhcC
Q 011106 163 HNKVTSDEFVLPDFEEASRIHKSQL----ALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKLG 238 (493)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 238 (493)
..+.... .....+ ..+...... ......... ......+.+..+.+.+. +.++
T Consensus 137 ----------~~~~~~~--~~~~~~~~~~~~~~~~lgl-~~~~~~~~~-----~~~~~~l~~~~~~l~p~------~~~~ 192 (404)
T 3h4t_A 137 ----------ERDMYNQ--GADRLFGDAVNSHRASIGL-PPVEHLYDY-----GYTDQPWLAADPVLSPL------RPTD 192 (404)
T ss_dssp ----------HHHHHHH--HHHHHHHHHHHHHHHHTTC-CCCCCHHHH-----HHCSSCEECSCTTTSCC------CTTC
T ss_pred ----------HHHHHHH--HHHHHhHHHHHHHHHHcCC-CCCcchhhc-----cccCCeEEeeCcceeCC------CCCC
Confidence 0000000 000000 000000000 000000000 00112233444445433 2356
Q ss_pred CceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCC
Q 011106 239 LSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPI 318 (493)
Q Consensus 239 ~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~ 318 (493)
+++.++|++..+. ...+++++.+|++.. +++|||++||+.. ..+.+..++++++..+.++||+++...
T Consensus 193 ~~~~~~G~~~~~~---------~~~~~~~l~~~l~~~--~~~Vlv~~Gs~~~-~~~~~~~~~~al~~~~~~vv~~~g~~~ 260 (404)
T 3h4t_A 193 LGTVQTGAWILPD---------QRPLSAELEGFLRAG--SPPVYVGFGSGPA-PAEAARVAIEAVRAQGRRVVLSSGWAG 260 (404)
T ss_dssp CSCCBCCCCCCCC---------CCCCCHHHHHHHHTS--SCCEEECCTTSCC-CTTHHHHHHHHHHHTTCCEEEECTTTT
T ss_pred CCeEEeCccccCC---------CCCCCHHHHHHHhcC--CCeEEEECCCCCC-cHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 7899999887554 245678899999754 5699999999987 677888899999999999999987542
Q ss_pred CCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchhh
Q 011106 319 GFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFN 398 (493)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~n 398 (493)
. ..+.. ++|+++.+|+||.++|+++++ ||||||+||+.|++++|+|+|++|+..||+.|
T Consensus 261 -------~---~~~~~---------~~~v~~~~~~~~~~ll~~~d~--~v~~gG~~t~~Eal~~GvP~v~~p~~~dQ~~n 319 (404)
T 3h4t_A 261 -------L---GRIDE---------GDDCLVVGEVNHQVLFGRVAA--VVHHGGAGTTTAVTRAGAPQVVVPQKADQPYY 319 (404)
T ss_dssp -------C---CCSSC---------CTTEEEESSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTCCEEECCCSTTHHHH
T ss_pred -------c---ccccC---------CCCEEEecCCCHHHHHhhCcE--EEECCcHHHHHHHHHcCCCEEEcCCcccHHHH
Confidence 0 00111 679999999999999998776 99999999999999999999999999999999
Q ss_pred HHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHH
Q 011106 399 AKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAA 478 (493)
Q Consensus 399 a~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 478 (493)
|+++++. |+|+.+.. ..+++++|.++|+++|+ + +|+++++++++.++ . +| ..++++.|.+.+
T Consensus 320 a~~~~~~-G~g~~l~~---~~~~~~~l~~ai~~ll~-~----~~~~~~~~~~~~~~-------~-~~-~~~~~~~i~~~~ 381 (404)
T 3h4t_A 320 AGRVADL-GVGVAHDG---PTPTVESLSAALATALT-P----GIRARAAAVAGTIR-------T-DG-TTVAAKLLLEAI 381 (404)
T ss_dssp HHHHHHH-TSEEECSS---SSCCHHHHHHHHHHHTS-H----HHHHHHHHHHTTCC-------C-CH-HHHHHHHHHHHH
T ss_pred HHHHHHC-CCEeccCc---CCCCHHHHHHHHHHHhC-H----HHHHHHHHHHHHHh-------h-hH-HHHHHHHHHHHH
Confidence 9999977 99999987 78899999999999998 7 89999999999885 4 44 677777777766
Q ss_pred Hhhc
Q 011106 479 ISMK 482 (493)
Q Consensus 479 ~~~~ 482 (493)
++.+
T Consensus 382 ~~~~ 385 (404)
T 3h4t_A 382 SRQR 385 (404)
T ss_dssp HC--
T ss_pred hhCC
Confidence 5443
No 11
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=100.00 E-value=9.2e-40 Score=327.91 Aligned_cols=390 Identities=14% Similarity=0.137 Sum_probs=265.0
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCC---C
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSE---N 80 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~---~ 80 (493)
+++||+|+++++.||++|++.||++|++ +||+|+|++++.+.+.+.. .++.+..++.. ++.... .
T Consensus 19 ~m~rIl~~~~~~~GHv~p~l~La~~L~~--~Gh~V~v~~~~~~~~~~~~-----~G~~~~~~~~~-----~~~~~~~~~~ 86 (415)
T 3rsc_A 19 HMAHLLIVNVASHGLILPTLTVVTELVR--RGHRVSYVTAGGFAEPVRA-----AGATVVPYQSE-----IIDADAAEVF 86 (415)
T ss_dssp CCCEEEEECCSCHHHHGGGHHHHHHHHH--TTCEEEEEECGGGHHHHHH-----TTCEEEECCCS-----TTTCCHHHHH
T ss_pred cCCEEEEEeCCCccccccHHHHHHHHHH--CCCEEEEEeCHHHHHHHHh-----cCCEEEecccc-----ccccccchhh
Confidence 3679999999999999999999999999 9999999999999999888 56788888742 111100 0
Q ss_pred CCCCChhhHHH-HHHHHhhhhHHHHHHHHHhhcCCCCCcEEEEC-CcchhhHHHHHHcCCceEEEechhHHHHHHHhhhc
Q 011106 81 CDVLPYNLVIH-LLRASTSLKPAFKEVISSLINQGRPPLCIIAD-IFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFW 158 (493)
Q Consensus 81 ~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D-~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~ 158 (493)
....+...+.. +..........+.+++++.+ ||+||+| ....++..+|+.+|||++.+.+....... +....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~-~~~~~ 160 (415)
T 3rsc_A 87 GSDDLGVRPHLMYLRENVSVLRATAEALDGDV-----PDLVLYDDFPFIAGQLLAARWRRPAVRLSAAFASNEH-YSFSQ 160 (415)
T ss_dssp HSSSSCHHHHHHHHHHHHHHHHHHHHHHSSSC-----CSEEEEESTTHHHHHHHHHHTTCCEEEEESSCCCCSS-CCHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhccC-----CCEEEECchhhhHHHHHHHHhCCCEEEEEecccccCc-ccccc
Confidence 01111122222 33334445566777777666 9999999 77788889999999999998754321000 00000
Q ss_pred ccCCCCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhcC
Q 011106 159 TNLPHNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKLG 238 (493)
Q Consensus 159 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 238 (493)
... .......+.........+..+............+.. ...+..+...-..++ .....++
T Consensus 161 ~~~--------~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~l~~~~~~~~-----~~~~~~~ 221 (415)
T 3rsc_A 161 DMV--------TLAGTIDPLDLPVFRDTLRDLLAEHGLSRSVVDCWN------HVEQLNLVFVPKAFQ-----IAGDTFD 221 (415)
T ss_dssp HHH--------HHHTCCCGGGCHHHHHHHHHHHHHTTCCCCHHHHHT------CCCSEEEESSCTTTS-----TTGGGCC
T ss_pred ccc--------cccccCChhhHHHHHHHHHHHHHHcCCCCChhhhhc------CCCCeEEEEcCcccC-----CCcccCC
Confidence 000 000000000000000011111111111110000000 011333443333333 2345677
Q ss_pred CceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCC
Q 011106 239 LSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPI 318 (493)
Q Consensus 239 ~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~ 318 (493)
.++.++||++.... +..+|....+++++|||++||......+.+..++++++..+.+++|.++...
T Consensus 222 ~~~~~vGp~~~~~~--------------~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~ 287 (415)
T 3rsc_A 222 DRFVFVGPCFDDRR--------------FLGEWTRPADDLPVVLVSLGTTFNDRPGFFRDCARAFDGQPWHVVMTLGGQV 287 (415)
T ss_dssp TTEEECCCCCCCCG--------------GGCCCCCCSSCCCEEEEECTTTSCCCHHHHHHHHHHHTTSSCEEEEECTTTS
T ss_pred CceEEeCCCCCCcc--------------cCcCccccCCCCCEEEEECCCCCCChHHHHHHHHHHHhcCCcEEEEEeCCCC
Confidence 88999999875431 2234554445578999999999877778888999999998899999887542
Q ss_pred CCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchhh
Q 011106 319 GFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFN 398 (493)
Q Consensus 319 ~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~n 398 (493)
+. +.+.. . ++|+++.+|+||.++|+++++ ||||||+||+.|++++|+|+|++|...||+.|
T Consensus 288 ------~~---~~l~~------~--~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~ 348 (415)
T 3rsc_A 288 ------DP---AALGD------L--PPNVEAHRWVPHVKVLEQATV--CVTHGGMGTLMEALYWGRPLVVVPQSFDVQPM 348 (415)
T ss_dssp ------CG---GGGCC------C--CTTEEEESCCCHHHHHHHEEE--EEESCCHHHHHHHHHTTCCEEECCCSGGGHHH
T ss_pred ------Ch---HHhcC------C--CCcEEEEecCCHHHHHhhCCE--EEECCcHHHHHHHHHhCCCEEEeCCcchHHHH
Confidence 00 00110 1 679999999999999999886 99999999999999999999999999999999
Q ss_pred HHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHH
Q 011106 399 AKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAA 478 (493)
Q Consensus 399 a~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 478 (493)
|+++++. |+|+.+.. ..+++++|.++|.++|+|+ +++++++++++.+. ..+| ..++++.+.+.+
T Consensus 349 a~~l~~~-g~g~~~~~---~~~~~~~l~~~i~~ll~~~----~~~~~~~~~~~~~~-------~~~~-~~~~~~~i~~~~ 412 (415)
T 3rsc_A 349 ARRVDQL-GLGAVLPG---EKADGDTLLAAVGAVAADP----ALLARVEAMRGHVR-------RAGG-AARAADAVEAYL 412 (415)
T ss_dssp HHHHHHH-TCEEECCG---GGCCHHHHHHHHHHHHTCH----HHHHHHHHHHHHHH-------HSCH-HHHHHHHHHHHH
T ss_pred HHHHHHc-CCEEEccc---CCCCHHHHHHHHHHHHcCH----HHHHHHHHHHHHHH-------hcCH-HHHHHHHHHHHh
Confidence 9999977 99999988 7889999999999999999 99999999999997 4444 667777777665
Q ss_pred H
Q 011106 479 I 479 (493)
Q Consensus 479 ~ 479 (493)
.
T Consensus 413 ~ 413 (415)
T 3rsc_A 413 A 413 (415)
T ss_dssp H
T ss_pred h
Confidence 4
No 12
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=100.00 E-value=5.9e-39 Score=320.53 Aligned_cols=393 Identities=16% Similarity=0.155 Sum_probs=262.7
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCC
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVL 84 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~ 84 (493)
++||+|+++++.||++|++.||++|++ +||+|+|++++.+.+.+.. .++.+..++...... ..........
T Consensus 4 M~~il~~~~~~~Ghv~~~~~La~~L~~--~GheV~v~~~~~~~~~~~~-----~G~~~~~~~~~~~~~--~~~~~~~~~~ 74 (402)
T 3ia7_A 4 QRHILFANVQGHGHVYPSLGLVSELAR--RGHRITYVTTPLFADEVKA-----AGAEVVLYKSEFDTF--HVPEVVKQED 74 (402)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHH--TTCEEEEEECHHHHHHHHH-----TTCEEEECCCGGGTS--SSSSSSCCTT
T ss_pred CCEEEEEeCCCCcccccHHHHHHHHHh--CCCEEEEEcCHHHHHHHHH-----cCCEEEecccccccc--cccccccccc
Confidence 469999999999999999999999999 9999999999988888887 567888877421110 0000011111
Q ss_pred ChhhHHH-HHHHHhhhhHHHHHHHHHhhcCCCCCcEEEEC-CcchhhHHHHHHcCCceEEEechhHHHHHHHhhhcccCC
Q 011106 85 PYNLVIH-LLRASTSLKPAFKEVISSLINQGRPPLCIIAD-IFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTNLP 162 (493)
Q Consensus 85 ~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D-~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~p 162 (493)
+...+.. +..........+.+++++.+ ||+||+| .+..++..+|+.+|||++.+.+....... +.......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~-~~~~~~~~- 147 (402)
T 3ia7_A 75 AETQLHLVYVRENVAILRAAEEALGDNP-----PDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANEH-YSLFKELW- 147 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC-----CSEEEEESTTHHHHHHHHHHHTCCEEEEESSCCCBTT-BCHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccC-----CCEEEECchHHHHHHHHHHhhCCCEEEEecccccCcc-cccccccc-
Confidence 2222222 33333445566667776666 9999999 77788899999999999998644321000 00000000
Q ss_pred CCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhcCCcee
Q 011106 163 HNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKLGLSVW 242 (493)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~ 242 (493)
.......+.........+...............+.. . ..+..+...-.+++ .....++.++.
T Consensus 148 -------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~--~~~~~l~~~~~~~~-----~~~~~~~~~~~ 209 (402)
T 3ia7_A 148 -------KSNGQRHPADVEAVHSVLVDLLGKYGVDTPVKEYWD----E--IEGLTIVFLPKSFQ-----PFAETFDERFA 209 (402)
T ss_dssp -------HHHTCCCGGGSHHHHHHHHHHHHTTTCCSCHHHHHT----C--CCSCEEESSCGGGS-----TTGGGCCTTEE
T ss_pred -------ccccccChhhHHHHHHHHHHHHHHcCCCCChhhhhc----C--CCCeEEEEcChHhC-----CccccCCCCeE
Confidence 000000000000000011111111111000000000 0 01233333333333 23445678899
Q ss_pred eccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCC
Q 011106 243 PVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDI 322 (493)
Q Consensus 243 ~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~ 322 (493)
++||+..... ....|+...+++++|||++||......+.+..++++++..+.+++|.++...
T Consensus 210 ~vGp~~~~~~--------------~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---- 271 (402)
T 3ia7_A 210 FVGPTLTGRD--------------GQPGWQPPRPDAPVLLVSLGNQFNEHPEFFRACAQAFADTPWHVVMAIGGFL---- 271 (402)
T ss_dssp ECCCCCCC------------------CCCCCSSTTCCEEEEECCSCSSCCHHHHHHHHHHHTTSSCEEEEECCTTS----
T ss_pred EeCCCCCCcc--------------cCCCCcccCCCCCEEEEECCCCCcchHHHHHHHHHHHhcCCcEEEEEeCCcC----
Confidence 9999875431 2234554445577999999999877778888999999998899999887542
Q ss_pred CcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccc-cccchhhHHH
Q 011106 323 NSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPM-AAEQFFNAKF 401 (493)
Q Consensus 323 ~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~-~~DQ~~na~~ 401 (493)
+. +.+.. . ++|+++.+|+|+.++|+++++ ||||||+||+.|++++|+|+|++|. ..||+.||++
T Consensus 272 --~~---~~~~~------~--~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~ 336 (402)
T 3ia7_A 272 --DP---AVLGP------L--PPNVEAHQWIPFHSVLAHARA--CLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAER 336 (402)
T ss_dssp --CG---GGGCS------C--CTTEEEESCCCHHHHHTTEEE--EEECCCHHHHHHHHHTTCCEEECGGGCGGGHHHHHH
T ss_pred --Ch---hhhCC------C--CCcEEEecCCCHHHHHhhCCE--EEECCCHHHHHHHHHhCCCEEEeCCCcccHHHHHHH
Confidence 00 00111 1 679999999999999999886 9999999999999999999999999 9999999999
Q ss_pred HhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHh
Q 011106 402 LEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAIS 480 (493)
Q Consensus 402 v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 480 (493)
+++. |+|+.+.. ..++++.|.++|.++|+|+ +++++++++++.+. ..++ ..++++.+.+.+.+
T Consensus 337 ~~~~-g~g~~~~~---~~~~~~~l~~~~~~ll~~~----~~~~~~~~~~~~~~-------~~~~-~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 337 VIEL-GLGSVLRP---DQLEPASIREAVERLAADS----AVRERVRRMQRDIL-------SSGG-PARAADEVEAYLGR 399 (402)
T ss_dssp HHHT-TSEEECCG---GGCSHHHHHHHHHHHHHCH----HHHHHHHHHHHHHH-------TSCH-HHHHHHHHHHHHHH
T ss_pred HHHc-CCEEEccC---CCCCHHHHHHHHHHHHcCH----HHHHHHHHHHHHHh-------hCCh-HHHHHHHHHHHHhh
Confidence 9977 99999988 7889999999999999999 99999999999986 4444 67777777776653
No 13
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=100.00 E-value=2.9e-38 Score=319.26 Aligned_cols=384 Identities=13% Similarity=0.113 Sum_probs=245.1
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCC-------
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPN------- 77 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~------- 77 (493)
++||+|++.++.||++|+++||++|++ +||+|+|++++.+.+.++. .+++++.++.....+++...
T Consensus 20 ~mrIl~~~~~~~GHv~p~l~la~~L~~--~GheV~~~~~~~~~~~v~~-----~G~~~~~i~~~~~~~~~~~~~~~~~~~ 92 (441)
T 2yjn_A 20 HMRVVFSSMASKSHLFGLVPLAWAFRA--AGHEVRVVASPALTEDITA-----AGLTAVPVGTDVDLVDFMTHAGHDIID 92 (441)
T ss_dssp CCEEEEECCSCHHHHTTTHHHHHHHHH--TTCEEEEEECGGGHHHHHT-----TTCCEEECSCCCCHHHHHHHTTHHHHH
T ss_pred ccEEEEEcCCCcchHhHHHHHHHHHHH--CCCeEEEEeCchhHHHHHh-----CCCceeecCCccchHHHhhhhhccccc
Confidence 479999999999999999999999999 9999999999988888877 66788888743100010000
Q ss_pred ----CCCC---CC-CChhhHHHHHHHH----h-----h-hhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCc
Q 011106 78 ----SENC---DV-LPYNLVIHLLRAS----T-----S-LKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVF 139 (493)
Q Consensus 78 ----~~~~---~~-~~~~~~~~~~~~~----~-----~-~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP 139 (493)
.... .. .....+......+ . . ....+.+++++.+ ||+||+|.+..++..+|+.+|||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----pDlVv~d~~~~~~~~aA~~lgiP 167 (441)
T 2yjn_A 93 YVRSLDFSERDPATLTWEHLLGMQTVLTPTFYALMSPDTLIEGMVSFCRKWR-----PDLVIWEPLTFAAPIAAAVTGTP 167 (441)
T ss_dssp HHTTCCCTTCCGGGGSHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHHHC-----CSEEEECTTCTHHHHHHHHHTCC
T ss_pred ccccccccccCcchhhhhhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcC-----CCEEEecCcchhHHHHHHHcCCC
Confidence 0000 00 0111111111111 1 1 4456666777777 99999998778889999999999
Q ss_pred eEEEechhHHHHH---HHhhhcccCCCCCCCCCcccCCCCCcccccCh-hhchhhhhccCCCCchhhhhhccccccccCc
Q 011106 140 HAIFSGSGSYGLA---CYYSFWTNLPHNKVTSDEFVLPDFEEASRIHK-SQLALNMLEADGTDSWSLFQGENFPAWVNSN 215 (493)
Q Consensus 140 ~i~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (493)
++.+...+..... .+.......+.. .+. ... ..+..+............ ....+
T Consensus 168 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~----~~~~~~l~~~~~~~g~~~~~~~--------~~~~~ 225 (441)
T 2yjn_A 168 HARLLWGPDITTRARQNFLGLLPDQPEE----------HRE----DPLAEWLTWTLEKYGGPAFDEE--------VVVGQ 225 (441)
T ss_dssp EEEECSSCCHHHHHHHHHHHHGGGSCTT----------TCC----CHHHHHHHHHHHHTTCCCCCGG--------GTSCS
T ss_pred EEEEecCCCcchhhhhhhhhhccccccc----------ccc----chHHHHHHHHHHHcCCCCCCcc--------ccCCC
Confidence 9998654422111 111111111100 000 000 001111111000000000 00122
Q ss_pred eEEeccccccchhHHHHHHHhcC-CceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCC---
Q 011106 216 GILCNTIEEFDQIGFIYLKRKLG-LSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTI--- 291 (493)
Q Consensus 216 ~~l~~s~~~le~~~~~~~~~~~~-~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~--- 291 (493)
..+....+.++++ ..++ ..+.++++ ..+.++.+|++..+++++|||++||+...
T Consensus 226 ~~l~~~~~~~~~~------~~~~~~~~~~~~~----------------~~~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~ 283 (441)
T 2yjn_A 226 WTIDPAPAAIRLD------TGLKTVGMRYVDY----------------NGPSVVPEWLHDEPERRRVCLTLGISSRENSI 283 (441)
T ss_dssp SEEECSCGGGSCC------CCCCEEECCCCCC----------------CSSCCCCGGGSSCCSSCEEEEEC---------
T ss_pred eEEEecCccccCC------CCCCCCceeeeCC----------------CCCcccchHhhcCCCCCEEEEECCCCcccccC
Confidence 2333333333311 1121 11222211 01234557887666678999999998753
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeecc
Q 011106 292 SASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHC 371 (493)
Q Consensus 292 ~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~Hg 371 (493)
..+.+..++++++..+.++||+++... . ..+.. . ++|+++.+|+||.++|+++++ |||||
T Consensus 284 ~~~~~~~~~~al~~~~~~~v~~~g~~~-------~---~~l~~-~-------~~~v~~~~~~~~~~ll~~ad~--~V~~~ 343 (441)
T 2yjn_A 284 GQVSIEELLGAVGDVDAEIIATFDAQQ-------L---EGVAN-I-------PDNVRTVGFVPMHALLPTCAA--TVHHG 343 (441)
T ss_dssp -CCSTTTTHHHHHTSSSEEEECCCTTT-------T---SSCSS-C-------CSSEEECCSCCHHHHGGGCSE--EEECC
T ss_pred hHHHHHHHHHHHHcCCCEEEEEECCcc-------h---hhhcc-C-------CCCEEEecCCCHHHHHhhCCE--EEECC
Confidence 235667788999999999999987531 1 11211 1 679999999999999988776 99999
Q ss_pred CchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 011106 372 GWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVRE 451 (493)
Q Consensus 372 G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~ 451 (493)
|+||++|++++|+|+|++|...||+.||+++++. |+|+.++. ..+++++|.++|.++|+|+ +++++++++++
T Consensus 344 G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~-g~g~~~~~---~~~~~~~l~~~i~~ll~~~----~~~~~~~~~~~ 415 (441)
T 2yjn_A 344 GPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEF-GAGIALPV---PELTPDQLRESVKRVLDDP----AHRAGAARMRD 415 (441)
T ss_dssp CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHH-TSEEECCT---TTCCHHHHHHHHHHHHHCH----HHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHc-CCEEEccc---ccCCHHHHHHHHHHHhcCH----HHHHHHHHHHH
Confidence 9999999999999999999999999999999977 99999987 7899999999999999999 99999999999
Q ss_pred HHHHhhhccccCCCChHHHHHHHHHHHHh
Q 011106 452 MIKNAMKDEEGCRGSSVKAMDDFLSAAIS 480 (493)
Q Consensus 452 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 480 (493)
.++ ..++ ..+.++.|.+.+.+
T Consensus 416 ~~~-------~~~~-~~~~~~~i~~~~~~ 436 (441)
T 2yjn_A 416 DML-------AEPS-PAEVVGICEELAAG 436 (441)
T ss_dssp HHH-------TSCC-HHHHHHHHHHHHHC
T ss_pred HHH-------cCCC-HHHHHHHHHHHHHh
Confidence 997 5555 66777777666543
No 14
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=100.00 E-value=3.2e-37 Score=306.15 Aligned_cols=362 Identities=13% Similarity=0.068 Sum_probs=252.0
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCC-------CCCCCC
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSH-------GLPPNS 78 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~-------~l~~~~ 78 (493)
|||++++.++.||++|+++||++|.+ +||+|+|++++...+.+.. .++.++.++...... +++...
T Consensus 1 MrIl~~~~~~~Gh~~p~~~la~~L~~--~Gh~V~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (384)
T 2p6p_A 1 MRILFVAAGSPATVFALAPLATAARN--AGHQVVMAANQDMGPVVTG-----VGLPAVATTDLPIRHFITTDREGRPEAI 73 (384)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHH--TTCEEEEEECGGGHHHHHH-----TTCCEEESCSSCHHHHHHBCTTSCBCCC
T ss_pred CEEEEEeCCccchHhHHHHHHHHHHH--CCCEEEEEeCHHHHHHHHh-----CCCEEEEeCCcchHHHHhhhcccCcccc
Confidence 58999999999999999999999999 9999999999887777777 566788776421000 011000
Q ss_pred CCCCCCChhhH----HH-HHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHH
Q 011106 79 ENCDVLPYNLV----IH-LLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLAC 153 (493)
Q Consensus 79 ~~~~~~~~~~~----~~-~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~ 153 (493)
+...... .. +..........+.+++++.+ ||+||+|.+..++..+|+.+|||++.+...+..
T Consensus 74 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~~~~---- 140 (384)
T 2p6p_A 74 ----PSDPVAQARFTGRWFARMAASSLPRMLDFSRAWR-----PDLIVGGTMSYVAPLLALHLGVPHARQTWDAVD---- 140 (384)
T ss_dssp ----CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CSEEEEETTCTHHHHHHHHHTCCEEEECCSSCC----
T ss_pred ----CcchHHHHHHHHHHHHhhHHHHHHHHHHHHhccC-----CcEEEECcchhhHHHHHHhcCCCEEEeccCCcc----
Confidence 0000111 11 11122334566777777777 999999987778889999999999988643210
Q ss_pred HhhhcccCCCCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhcc-ccccccCceEEeccccccchhHHHH
Q 011106 154 YYSFWTNLPHNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGEN-FPAWVNSNGILCNTIEEFDQIGFIY 232 (493)
Q Consensus 154 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~s~~~le~~~~~~ 232 (493)
...+.. .+... ..+...+. .........+++++...++++.
T Consensus 141 -------------------~~~~~~-------~~~~~---------~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~--- 182 (384)
T 2p6p_A 141 -------------------ADGIHP-------GADAE---------LRPELSELGLERLPAPDLFIDICPPSLRPAN--- 182 (384)
T ss_dssp -------------------CTTTHH-------HHHHH---------THHHHHHTTCSSCCCCSEEEECSCGGGSCTT---
T ss_pred -------------------cchhhH-------HHHHH---------HHHHHHHcCCCCCCCCCeEEEECCHHHCCCC---
Confidence 000000 00000 00000000 0011114566777776666431
Q ss_pred HHHhcC-CceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCC-----CHHHHHHHHHHHHhC
Q 011106 233 LKRKLG-LSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTI-----SASQMMQLAMALEAS 306 (493)
Q Consensus 233 ~~~~~~-~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~-----~~~~~~~i~~al~~~ 306 (493)
.++ .++.++++ .. +.++.+|++..+++++|||++||.... ..+.+..++++++..
T Consensus 183 ---~~~~~~~~~~~~---~~-------------~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~ 243 (384)
T 2p6p_A 183 ---AAPARMMRHVAT---SR-------------QCPLEPWMYTRDTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW 243 (384)
T ss_dssp ---SCCCEECCCCCC---CC-------------CCBCCHHHHCCCSSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT
T ss_pred ---CCCCCceEecCC---CC-------------CCCCCchhhcCCCCCEEEEECCCCCccccccccHHHHHHHHHHHhcC
Confidence 122 23444421 11 123456776644567999999999764 446788899999999
Q ss_pred CCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcE
Q 011106 307 GKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPI 386 (493)
Q Consensus 307 ~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~ 386 (493)
+.+++|+++.. ..+.+. . . ++|+.+ +|+||.++|+++++ ||||||+||++||+++|+|+
T Consensus 244 ~~~~~~~~g~~--------------~~~~l~-~-~--~~~v~~-~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~ 302 (384)
T 2p6p_A 244 DVELIVAAPDT--------------VAEALR-A-E--VPQARV-GWTPLDVVAPTCDL--LVHHAGGVSTLTGLSAGVPQ 302 (384)
T ss_dssp TCEEEEECCHH--------------HHHHHH-H-H--CTTSEE-ECCCHHHHGGGCSE--EEECSCTTHHHHHHHTTCCE
T ss_pred CcEEEEEeCCC--------------CHHhhC-C-C--CCceEE-cCCCHHHHHhhCCE--EEeCCcHHHHHHHHHhCCCE
Confidence 99999988632 011111 1 1 679999 99999999988775 99999999999999999999
Q ss_pred ecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCC
Q 011106 387 IGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGS 466 (493)
Q Consensus 387 l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~ 466 (493)
|++|...||+.||+++++. |+|+.++. ..++.++|.++|+++|+|+ +++++++++++.++ ..+|
T Consensus 303 v~~p~~~dq~~~a~~~~~~-g~g~~~~~---~~~~~~~l~~~i~~ll~~~----~~~~~~~~~~~~~~-------~~~~- 366 (384)
T 2p6p_A 303 LLIPKGSVLEAPARRVADY-GAAIALLP---GEDSTEAIADSCQELQAKD----TYARRAQDLSREIS-------GMPL- 366 (384)
T ss_dssp EECCCSHHHHHHHHHHHHH-TSEEECCT---TCCCHHHHHHHHHHHHHCH----HHHHHHHHHHHHHH-------TSCC-
T ss_pred EEccCcccchHHHHHHHHC-CCeEecCc---CCCCHHHHHHHHHHHHcCH----HHHHHHHHHHHHHH-------hCCC-
Confidence 9999999999999999976 99999987 6789999999999999998 89999999999997 5555
Q ss_pred hHHHHHHHHHHHHhh
Q 011106 467 SVKAMDDFLSAAISM 481 (493)
Q Consensus 467 ~~~~~~~~~~~~~~~ 481 (493)
..++++.|.+.+.-+
T Consensus 367 ~~~~~~~i~~~~~~~ 381 (384)
T 2p6p_A 367 PATVVTALEQLAHHH 381 (384)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhc
Confidence 777888777776543
No 15
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=100.00 E-value=1.6e-37 Score=313.03 Aligned_cols=388 Identities=17% Similarity=0.157 Sum_probs=254.1
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCC---
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENC--- 81 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~--- 81 (493)
++||+|++.++.||++|++.||++|.+ +||+|+++++....+.+.+ .+++++.++.. ++......
T Consensus 7 m~kIl~~~~~~~Gh~~p~~~la~~L~~--~G~~V~~~~~~~~~~~~~~-----~g~~~~~~~~~-----~~~~~~~~~~~ 74 (430)
T 2iyf_A 7 PAHIAMFSIAAHGHVNPSLEVIRELVA--RGHRVTYAIPPVFADKVAA-----TGPRPVLYHST-----LPGPDADPEAW 74 (430)
T ss_dssp -CEEEEECCSCHHHHGGGHHHHHHHHH--TTCEEEEEECGGGHHHHHT-----TSCEEEECCCC-----SCCTTSCGGGG
T ss_pred cceEEEEeCCCCccccchHHHHHHHHH--CCCeEEEEeCHHHHHHHHh-----CCCEEEEcCCc-----Ccccccccccc
Confidence 469999999999999999999999999 9999999999988777776 56788877631 22111110
Q ss_pred CCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhcccC
Q 011106 82 DVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTNL 161 (493)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~ 161 (493)
.......+..+..........+.+++++.+ ||+||+|.+..++..+|+.+|||++.+++.+.........+....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 149 (430)
T 2iyf_A 75 GSTLLDNVEPFLNDAIQALPQLADAYADDI-----PDLVLHDITSYPARVLARRWGVPAVSLSPNLVAWKGYEEEVAEPM 149 (430)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHTTSC-----CSEEEEETTCHHHHHHHHHHTCCEEEEESSCCCCTTHHHHTHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhccC-----CCEEEECCccHHHHHHHHHcCCCEEEEecccccccccccccccch
Confidence 001111112222223344556666666655 999999987778889999999999998765421000000000000
Q ss_pred CCCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhcCCc-
Q 011106 162 PHNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKLGLS- 240 (493)
Q Consensus 162 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~- 240 (493)
.......++.. .....+..+........... ......+.+++++...+++. ...++++
T Consensus 150 -----~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~-------~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~ 208 (430)
T 2iyf_A 150 -----WREPRQTERGR----AYYARFEAWLKENGITEHPD-------TFASHPPRSLVLIPKALQPH-----ADRVDEDV 208 (430)
T ss_dssp -----HHHHHHSHHHH----HHHHHHHHHHHHTTCCSCHH-------HHHHCCSSEEECSCGGGSTT-----GGGSCTTT
T ss_pred -----hhhhccchHHH----HHHHHHHHHHHHhCCCCCHH-------HHhcCCCcEEEeCcHHhCCC-----cccCCCcc
Confidence 00000000000 00000111111111000000 01113456778888777753 1346677
Q ss_pred eeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhC-CCcEEEEEcCCCC
Q 011106 241 VWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEAS-GKNFIWVVRPPIG 319 (493)
Q Consensus 241 ~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~-~~~vi~~~~~~~~ 319 (493)
+.++||.+.... ...+|.+..+++++|||++||+.....+.+..++++++.. +.+++|.++...
T Consensus 209 v~~vG~~~~~~~--------------~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~- 273 (430)
T 2iyf_A 209 YTFVGACQGDRA--------------EEGGWQRPAGAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKV- 273 (430)
T ss_dssp EEECCCCC-------------------CCCCCCCTTCSEEEEEECTTTCC-CHHHHHHHHHHHTTCTTEEEEEECC----
T ss_pred EEEeCCcCCCCC--------------CCCCCccccCCCCeEEEEcCCCCCCcHHHHHHHHHHHhcCCCeEEEEEeCCCC-
Confidence 999998654320 0123554444577999999999855677888899999885 888888887542
Q ss_pred CCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchhhH
Q 011106 320 FDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNA 399 (493)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na 399 (493)
+. +.+.. . ++|+.+.+|+||.++|+++++ ||||||+||++||+++|+|+|++|...||..|+
T Consensus 274 -----~~---~~l~~------~--~~~v~~~~~~~~~~~l~~ad~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~~q~~~a 335 (430)
T 2iyf_A 274 -----TP---AELGE------L--PDNVEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNA 335 (430)
T ss_dssp -----CG---GGGCS------C--CTTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHTTCCEEECCCSHHHHHHH
T ss_pred -----Ch---HHhcc------C--CCCeEEEecCCHHHHhhccCE--EEECCCccHHHHHHHhCCCEEECCCccchHHHH
Confidence 00 00110 1 578999999999999999886 999999999999999999999999999999999
Q ss_pred HHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHH
Q 011106 400 KFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAI 479 (493)
Q Consensus 400 ~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 479 (493)
+++++. |+|+.+.. ..+++++|.++|.++|+|+ ++++++.+++..+. ..+ +..+.++.+.+.++
T Consensus 336 ~~~~~~-g~g~~~~~---~~~~~~~l~~~i~~ll~~~----~~~~~~~~~~~~~~-------~~~-~~~~~~~~i~~~~~ 399 (430)
T 2iyf_A 336 DMLQGL-GVARKLAT---EEATADLLRETALALVDDP----EVARRLRRIQAEMA-------QEG-GTRRAADLIEAELP 399 (430)
T ss_dssp HHHHHT-TSEEECCC---C-CCHHHHHHHHHHHHHCH----HHHHHHHHHHHHHH-------HHC-HHHHHHHHHHTTSC
T ss_pred HHHHHc-CCEEEcCC---CCCCHHHHHHHHHHHHcCH----HHHHHHHHHHHHHH-------hcC-cHHHHHHHHHHHhh
Confidence 999976 99999987 6789999999999999998 89999999988886 333 35556666555443
No 16
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=100.00 E-value=1.3e-35 Score=295.96 Aligned_cols=353 Identities=14% Similarity=0.107 Sum_probs=222.8
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCC----CCCC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLP----PNSE 79 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~----~~~~ 79 (493)
.+|||+|++.++.||++|++.||++|++ +||+|++++++.+.+.+.. .++.+..++.......+. .+..
T Consensus 14 ~~MrIl~~~~~~~gh~~~~~~La~~L~~--~GheV~v~~~~~~~~~~~~-----~G~~~~~~~~~~~~~~~~~~~~~~~~ 86 (398)
T 4fzr_A 14 SHMRILVIAGCSEGFVMPLVPLSWALRA--AGHEVLVAASENMGPTVTG-----AGLPFAPTCPSLDMPEVLSWDREGNR 86 (398)
T ss_dssp -CCEEEEECCSSHHHHGGGHHHHHHHHH--TTCEEEEEEEGGGHHHHHH-----TTCCEEEEESSCCHHHHHSBCTTSCB
T ss_pred CceEEEEEcCCCcchHHHHHHHHHHHHH--CCCEEEEEcCHHHHHHHHh-----CCCeeEecCCccchHhhhhhhccCcc
Confidence 3689999999999999999999999999 9999999999888888888 556777776311100000 0000
Q ss_pred -CCCCCChhhH----HHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHHHHH
Q 011106 80 -NCDVLPYNLV----IHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGLACY 154 (493)
Q Consensus 80 -~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~ 154 (493)
.........+ ..+..........+.+++++.+ ||+|++|...+++..+|+.+|||++.+...........
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----pDlVv~d~~~~~~~~~a~~~giP~v~~~~~~~~~~~~~ 161 (398)
T 4fzr_A 87 TTMPREEKPLLEHIGRGYGRLVLRMRDEALALAERWK-----PDLVLTETYSLTGPLVAATLGIPWIEQSIRLASPELIK 161 (398)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCCHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCEEEECccccHHHHHHHhhCCCEEEeccCCCCchhhh
Confidence 0000011111 2222333455667888888888 99999998778889999999999998764421000000
Q ss_pred hhhcccCCCCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHH
Q 011106 155 YSFWTNLPHNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLK 234 (493)
Q Consensus 155 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~ 234 (493)
. .....+......... .........+......+... .
T Consensus 162 ~--------------------------~~~~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~-----~ 198 (398)
T 4fzr_A 162 S--------------------------AGVGELAPELAELGL------------TDFPDPLLSIDVCPPSMEAQ-----P 198 (398)
T ss_dssp H--------------------------HHHHHTHHHHHTTTC------------SSCCCCSEEEECSCGGGC--------
T ss_pred H--------------------------HHHHHHHHHHHHcCC------------CCCCCCCeEEEeCChhhCCC-----C
Confidence 0 000000000000000 00011122222222222211 1
Q ss_pred HhcCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCC--------CHHHHHHHHHHHHhC
Q 011106 235 RKLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTI--------SASQMMQLAMALEAS 306 (493)
Q Consensus 235 ~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~--------~~~~~~~i~~al~~~ 306 (493)
......+.++++.. ....+..|+...+++++|||++||+... ..+.+..++++++..
T Consensus 199 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~ 263 (398)
T 4fzr_A 199 KPGTTKMRYVPYNG---------------RNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL 263 (398)
T ss_dssp -CCCEECCCCCCCC---------------SSCCCCHHHHSCCSSCEEECC----------------CCSHHHHHHHGGGG
T ss_pred CCCCCCeeeeCCCC---------------CCCCCchhhhcCCCCCEEEEEccCcccccccccccchHHHHHHHHHHHHhC
Confidence 00111122332110 1223445665545577999999999643 235678899999999
Q ss_pred CCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcE
Q 011106 307 GKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPI 386 (493)
Q Consensus 307 ~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~ 386 (493)
+.+++|+.+... . +.+.. . ++|+++.+|+|+.++|+++++ ||||||.||+.||+++|+|+
T Consensus 264 ~~~~v~~~~~~~-------~---~~l~~------~--~~~v~~~~~~~~~~ll~~ad~--~v~~gG~~t~~Ea~~~G~P~ 323 (398)
T 4fzr_A 264 GFEVVVAVSDKL-------A---QTLQP------L--PEGVLAAGQFPLSAIMPACDV--VVHHGGHGTTLTCLSEGVPQ 323 (398)
T ss_dssp TCEEEECCCC------------------------C--CTTEEEESCCCHHHHGGGCSE--EEECCCHHHHHHHHHTTCCE
T ss_pred CCEEEEEeCCcc-------h---hhhcc------C--CCcEEEeCcCCHHHHHhhCCE--EEecCCHHHHHHHHHhCCCE
Confidence 999999887541 0 01111 1 679999999999999999886 99999999999999999999
Q ss_pred ecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Q 011106 387 IGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIK 454 (493)
Q Consensus 387 l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~ 454 (493)
|++|...||+.||+++++. |+|+.++. ..++++.|.++|.++|+|+ ++++++++.+..+.
T Consensus 324 v~~p~~~~q~~~a~~~~~~-g~g~~~~~---~~~~~~~l~~ai~~ll~~~----~~~~~~~~~~~~~~ 383 (398)
T 4fzr_A 324 VSVPVIAEVWDSARLLHAA-GAGVEVPW---EQAGVESVLAACARIRDDS----SYVGNARRLAAEMA 383 (398)
T ss_dssp EECCCSGGGHHHHHHHHHT-TSEEECC----------CHHHHHHHHHHCT----HHHHHHHHHHHHHT
T ss_pred EecCCchhHHHHHHHHHHc-CCEEecCc---ccCCHHHHHHHHHHHHhCH----HHHHHHHHHHHHHH
Confidence 9999999999999999977 99999988 7789999999999999999 99999999999985
No 17
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=100.00 E-value=6.2e-34 Score=283.81 Aligned_cols=361 Identities=12% Similarity=0.121 Sum_probs=239.8
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCC--------C
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGL--------P 75 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l--------~ 75 (493)
+.|||+|++.++.||++|++.||++|.+ +||+|+|+++ .+.+.+.. .++.+..++.......+ +
T Consensus 19 ~~MrIl~~~~~~~Ghv~~~~~La~~L~~--~GheV~v~~~-~~~~~~~~-----~G~~~~~~~~~~~~~~~~~~~~~~~~ 90 (398)
T 3oti_A 19 RHMRVLFVSSPGIGHLFPLIQLAWGFRT--AGHDVLIAVA-EHADRAAA-----AGLEVVDVAPDYSAVKVFEQVAKDNP 90 (398)
T ss_dssp CCCEEEEECCSSHHHHGGGHHHHHHHHH--TTCEEEEEES-SCHHHHHT-----TTCEEEESSTTCCHHHHHHHHHHHCH
T ss_pred hcCEEEEEcCCCcchHhHHHHHHHHHHH--CCCEEEEecc-chHHHHHh-----CCCeeEecCCccCHHHHhhhcccCCc
Confidence 3579999999999999999999999999 9999999999 88888887 66788888732100000 0
Q ss_pred ---CCC-CCCCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHHH
Q 011106 76 ---PNS-ENCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYGL 151 (493)
Q Consensus 76 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~ 151 (493)
... .............+..........+.+++++.+ ||+||+|...+++..+|+.+|||++.+.......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----pDlVv~d~~~~~~~~aA~~~giP~v~~~~~~~~~- 164 (398)
T 3oti_A 91 RFAETVATRPAIDLEEWGVQIAAVNRPLVDGTMALVDDYR-----PDLVVYEQGATVGLLAADRAGVPAVQRNQSAWRT- 164 (398)
T ss_dssp HHHHTGGGSCCCSGGGGHHHHHHHHGGGHHHHHHHHHHHC-----CSEEEEETTCHHHHHHHHHHTCCEEEECCTTCCC-
T ss_pred cccccccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCEEEECchhhHHHHHHHHcCCCEEEEeccCCCc-
Confidence 000 000011111223334444667788899999988 9999999888888999999999999875332000
Q ss_pred HHHhhhcccCCCCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHH
Q 011106 152 ACYYSFWTNLPHNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFI 231 (493)
Q Consensus 152 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~ 231 (493)
..+.. .....+..... +...........+...-..+..+.
T Consensus 165 ----------------------~~~~~---~~~~~l~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~-- 204 (398)
T 3oti_A 165 ----------------------RGMHR---SIASFLTDLMD-------------KHQVSLPEPVATIESFPPSLLLEA-- 204 (398)
T ss_dssp ----------------------TTHHH---HHHTTCHHHHH-------------HTTCCCCCCSEEECSSCGGGGTTS--
T ss_pred ----------------------cchhh---HHHHHHHHHHH-------------HcCCCCCCCCeEEEeCCHHHCCCC--
Confidence 00000 00000000000 000000111222221111111100
Q ss_pred HHHHhcCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCC--CHHHHHHHHHHHHhCCCc
Q 011106 232 YLKRKLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTI--SASQMMQLAMALEASGKN 309 (493)
Q Consensus 232 ~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~--~~~~~~~i~~al~~~~~~ 309 (493)
....+ .+.++ |. ..+..+.+|+...+++++|||++||.... ..+.+..++++++..+.+
T Consensus 205 -~~~~~--~~~~~-~~---------------~~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~~~~ 265 (398)
T 3oti_A 205 -EPEGW--FMRWV-PY---------------GGGAVLGDRLPPVPARPEVAITMGTIELQAFGIGAVEPIIAAAGEVDAD 265 (398)
T ss_dssp -CCCSB--CCCCC-CC---------------CCCEECCSSCCCCCSSCEEEECCTTTHHHHHCGGGHHHHHHHHHTSSSE
T ss_pred -CCCCC--Ccccc-CC---------------CCCcCCchhhhcCCCCCEEEEEcCCCccccCcHHHHHHHHHHHHcCCCE
Confidence 00001 11121 00 01123345665555678999999999542 456688899999999999
Q ss_pred EEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecc
Q 011106 310 FIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGW 389 (493)
Q Consensus 310 vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~ 389 (493)
++|+.++.. . +.+.. . ++|+++.+|+|+.++|+++++ ||||||.||+.||+++|+|+|++
T Consensus 266 ~v~~~g~~~-------~---~~l~~-~-------~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Eal~~G~P~v~~ 325 (398)
T 3oti_A 266 FVLALGDLD-------I---SPLGT-L-------PRNVRAVGWTPLHTLLRTCTA--VVHHGGGGTVMTAIDAGIPQLLA 325 (398)
T ss_dssp EEEECTTSC-------C---GGGCS-C-------CTTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHHTCCEEEC
T ss_pred EEEEECCcC-------h---hhhcc-C-------CCcEEEEccCCHHHHHhhCCE--EEECCCHHHHHHHHHhCCCEEEc
Confidence 999987642 0 00111 1 679999999999999999886 99999999999999999999999
Q ss_pred cccccchhhH--HHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCCh
Q 011106 390 PMAAEQFFNA--KFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSS 467 (493)
Q Consensus 390 P~~~DQ~~na--~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~ 467 (493)
|...||..|| +++++. |+|+.++. ..++++.|. ++|+|+ +++++++++++.+. ...+ .
T Consensus 326 p~~~dq~~~a~~~~~~~~-g~g~~~~~---~~~~~~~l~----~ll~~~----~~~~~~~~~~~~~~-------~~~~-~ 385 (398)
T 3oti_A 326 PDPRDQFQHTAREAVSRR-GIGLVSTS---DKVDADLLR----RLIGDE----SLRTAAREVREEMV-------ALPT-P 385 (398)
T ss_dssp CCTTCCSSCTTHHHHHHH-TSEEECCG---GGCCHHHHH----HHHHCH----HHHHHHHHHHHHHH-------TSCC-H
T ss_pred CCCchhHHHHHHHHHHHC-CCEEeeCC---CCCCHHHHH----HHHcCH----HHHHHHHHHHHHHH-------hCCC-H
Confidence 9999999999 999977 99999988 778888887 788898 99999999999997 4445 5
Q ss_pred HHHHHHHHHH
Q 011106 468 VKAMDDFLSA 477 (493)
Q Consensus 468 ~~~~~~~~~~ 477 (493)
.+.++.|.+.
T Consensus 386 ~~~~~~l~~l 395 (398)
T 3oti_A 386 AETVRRIVER 395 (398)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666555443
No 18
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=100.00 E-value=1.7e-33 Score=280.04 Aligned_cols=369 Identities=13% Similarity=0.120 Sum_probs=236.9
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEec-cCCCCCCC-----CCCCC
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEI-PFNSSSHG-----LPPNS 78 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i-~~~~~~~~-----l~~~~ 78 (493)
+|||+|++.++.||++|++.|+++|.+ +||+|++++++...+.+.. .++.+..+ +.+...+. .+...
T Consensus 1 ~MrIl~~~~~~~gh~~~~~~la~~L~~--~GheV~v~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMVPLCWALQA--SGHEVLIAAPPELQATAHG-----AGLTTAGIRGNDRTGDTGGTTQLRFPN 73 (391)
T ss_dssp CCEEEEECCSCHHHHHTTHHHHHHHHH--TTCEEEEEECHHHHHHHHH-----BTCEEEEC--------------CCSCC
T ss_pred CcEEEEEcCCCcchhhhHHHHHHHHHH--CCCEEEEecChhhHHHHHh-----CCCceeeecCCccchhhhhhhcccccc
Confidence 479999999999999999999999999 9999999999888788877 55677777 32111000 00000
Q ss_pred CCCCCCChhhH-HHHHHHHhhh-------hHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHH
Q 011106 79 ENCDVLPYNLV-IHLLRASTSL-------KPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYG 150 (493)
Q Consensus 79 ~~~~~~~~~~~-~~~~~~~~~~-------~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~ 150 (493)
........... ..+......+ ...+.+++++.+ ||+||+|...+++..+|+.+|||++.+.......
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----PD~Vv~~~~~~~~~~aa~~~giP~v~~~~~~~~~ 148 (391)
T 3tsa_A 74 PAFGQRDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWR-----PSVLLVDVCALIGRVLGGLLDLPVVLHRWGVDPT 148 (391)
T ss_dssp GGGGCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CSEEEEETTCHHHHHHHHHTTCCEEEECCSCCCT
T ss_pred cccccccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHhcC-----CCEEEeCcchhHHHHHHHHhCCCEEEEecCCccc
Confidence 00000011111 2222222334 677888888888 9999999877788899999999999875432100
Q ss_pred HHHHhhhcccCCCCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHH
Q 011106 151 LACYYSFWTNLPHNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGF 230 (493)
Q Consensus 151 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~ 230 (493)
.. .+.. .....+......... .........+.....+++..
T Consensus 149 ~~----------------------~~~~---~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~-- 189 (391)
T 3tsa_A 149 AG----------------------PFSD---RAHELLDPVCRHHGL------------TGLPTPELILDPCPPSLQAS-- 189 (391)
T ss_dssp TT----------------------HHHH---HHHHHHHHHHHHTTS------------SSSCCCSEEEECSCGGGSCT--
T ss_pred cc----------------------cccc---hHHHHHHHHHHHcCC------------CCCCCCceEEEecChhhcCC--
Confidence 00 0000 000000000000000 00001122222222222211
Q ss_pred HHHHHhcCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcC---CCHHHHHHHHHHHHhC-
Q 011106 231 IYLKRKLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNT---ISASQMMQLAMALEAS- 306 (493)
Q Consensus 231 ~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~---~~~~~~~~i~~al~~~- 306 (493)
.......+.++ |.. .+..+..|+...+++++|+|++||... ...+.+..++++ ++.
T Consensus 190 ---~~~~~~~~~~~-p~~---------------~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p 249 (391)
T 3tsa_A 190 ---DAPQGAPVQYV-PYN---------------GSGAFPAWGAARTSARRVCICMGRMVLNATGPAPLLRAVAAA-TELP 249 (391)
T ss_dssp ---TSCCCEECCCC-CCC---------------CCEECCGGGSSCCSSEEEEEECCHHHHHHHCSHHHHHHHHHH-HTST
T ss_pred ---CCCccCCeeee-cCC---------------CCcCCCchhhcCCCCCEEEEEcCCCCCcccchHHHHHHHHHh-ccCC
Confidence 00011122233 111 112233566655567899999999843 336778888888 776
Q ss_pred CCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcE
Q 011106 307 GKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPI 386 (493)
Q Consensus 307 ~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~ 386 (493)
+.+++|..++.. . +.+.. . ++|+++.+|+|+.++|+++++ ||||||.||++||+++|+|+
T Consensus 250 ~~~~v~~~~~~~-------~---~~l~~------~--~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~ 309 (391)
T 3tsa_A 250 GVEAVIAVPPEH-------R---ALLTD------L--PDNARIAESVPLNLFLRTCEL--VICAGGSGTAFTATRLGIPQ 309 (391)
T ss_dssp TEEEEEECCGGG-------G---GGCTT------C--CTTEEECCSCCGGGTGGGCSE--EEECCCHHHHHHHHHTTCCE
T ss_pred CeEEEEEECCcc-------h---hhccc------C--CCCEEEeccCCHHHHHhhCCE--EEeCCCHHHHHHHHHhCCCE
Confidence 788888876431 0 11211 1 679999999999999988876 99999999999999999999
Q ss_pred ecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCC
Q 011106 387 IGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGS 466 (493)
Q Consensus 387 l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~ 466 (493)
|++|...||..|+.++++. |+|+.+... ....+++.|.++|.++|+|+ ++++++++++..+. ..++
T Consensus 310 v~~p~~~~q~~~a~~~~~~-g~g~~~~~~-~~~~~~~~l~~ai~~ll~~~----~~~~~~~~~~~~~~-------~~~~- 375 (391)
T 3tsa_A 310 LVLPQYFDQFDYARNLAAA-GAGICLPDE-QAQSDHEQFTDSIATVLGDT----GFAAAAIKLSDEIT-------AMPH- 375 (391)
T ss_dssp EECCCSTTHHHHHHHHHHT-TSEEECCSH-HHHTCHHHHHHHHHHHHTCT----HHHHHHHHHHHHHH-------TSCC-
T ss_pred EecCCcccHHHHHHHHHHc-CCEEecCcc-cccCCHHHHHHHHHHHHcCH----HHHHHHHHHHHHHH-------cCCC-
Confidence 9999999999999999977 999988520 01378999999999999999 99999999999986 4444
Q ss_pred hHHHHHHHHHHH
Q 011106 467 SVKAMDDFLSAA 478 (493)
Q Consensus 467 ~~~~~~~~~~~~ 478 (493)
..+.++.+.+.+
T Consensus 376 ~~~~~~~i~~~~ 387 (391)
T 3tsa_A 376 PAALVRTLENTA 387 (391)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 566666665443
No 19
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.98 E-value=1.2e-30 Score=261.39 Aligned_cols=376 Identities=15% Similarity=0.140 Sum_probs=244.8
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCC------------CCC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFN------------SSS 71 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~------------~~~ 71 (493)
.+|||+|++.++.||++|++.||++|++ +||+|+|++++...+.+.. .++.++.++.. ...
T Consensus 19 ~~MrIl~~~~~~~Gh~~~~~~la~~L~~--~GheV~v~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 3otg_A 19 RHMRVLFASLGTHGHTYPLLPLATAARA--AGHEVTFATGEGFAGTLRK-----LGFEPVATGMPVFDGFLAALRIRFDT 91 (412)
T ss_dssp CSCEEEEECCSSHHHHGGGHHHHHHHHH--TTCEEEEEECGGGHHHHHH-----TTCEEEECCCCHHHHHHHHHHHHHSC
T ss_pred ceeEEEEEcCCCcccHHHHHHHHHHHHH--CCCEEEEEccHHHHHHHHh-----cCCceeecCcccccchhhhhhhhhcc
Confidence 3689999999999999999999999999 9999999999887777777 56788877730 000
Q ss_pred CCCCCCCCCCCCCChhhHHHHHHH-HhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechhHHH
Q 011106 72 HGLPPNSENCDVLPYNLVIHLLRA-STSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSGSYG 150 (493)
Q Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~ 150 (493)
...+. . ............+... .......+.+++++.+ ||+||+|....++..+|+.+|||++.+.......
T Consensus 92 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----pDvVv~~~~~~~~~~aa~~~giP~v~~~~~~~~~ 164 (412)
T 3otg_A 92 DSPEG-L-TPEQLSELPQIVFGRVIPQRVFDELQPVIERLR-----PDLVVQEISNYGAGLAALKAGIPTICHGVGRDTP 164 (412)
T ss_dssp SCCTT-C-CHHHHTTSHHHHHHTHHHHHHHHHHHHHHHHHC-----CSEEEEETTCHHHHHHHHHHTCCEEEECCSCCCC
T ss_pred cCCcc-C-ChhHhhHHHHHHHhccchHHHHHHHHHHHHhcC-----CCEEEECchhhHHHHHHHHcCCCEEEecccccCc
Confidence 00000 0 0000000001112222 2334567788888888 9999999777778889999999998865432100
Q ss_pred HHHHhhhcccCCCCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHH
Q 011106 151 LACYYSFWTNLPHNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGF 230 (493)
Q Consensus 151 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~ 230 (493)
++... .....+..+........ .. . ......+.++..+-..++..
T Consensus 165 -----------------------~~~~~---~~~~~~~~~~~~~g~~~-~~----~--~~~~~~d~~i~~~~~~~~~~-- 209 (412)
T 3otg_A 165 -----------------------DDLTR---SIEEEVRGLAQRLGLDL-PP----G--RIDGFGNPFIDIFPPSLQEP-- 209 (412)
T ss_dssp -----------------------SHHHH---HHHHHHHHHHHHTTCCC-CS----S--CCGGGGCCEEECSCGGGSCH--
T ss_pred -----------------------hhhhH---HHHHHHHHHHHHcCCCC-Cc----c--cccCCCCeEEeeCCHHhcCC--
Confidence 00000 00000000010000000 00 0 00112233333333333321
Q ss_pred HHHHHhcCCceeeccccccccccccccCCCCCCChhhHHhh-ccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCc
Q 011106 231 IYLKRKLGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEW-LDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKN 309 (493)
Q Consensus 231 ~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~ 309 (493)
...+......+.+.... .......| ....+++++|++++||......+.+..+++++++.+.+
T Consensus 210 ---~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~~l~~~~~~ 273 (412)
T 3otg_A 210 ---EFRARPRRHELRPVPFA-------------EQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDAD 273 (412)
T ss_dssp ---HHHTCTTEEECCCCCCC-------------CCCCCCGGGGGSCTTSCEEEEECTTTTCSCHHHHHHHHHHHHTSSSE
T ss_pred ---cccCCCCcceeeccCCC-------------CCCCCCCccccccCCCCEEEEEcCCCCcCcHHHHHHHHHHHHcCCCE
Confidence 11111111111111111 11123345 23234467999999999765678888899999999999
Q ss_pred EEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecc
Q 011106 310 FIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGW 389 (493)
Q Consensus 310 vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~ 389 (493)
++|.++... .. +.+.. . ++|+.+.+|+|+.++|+++++ ||+|||+||++||+++|+|+|++
T Consensus 274 ~~~~~g~~~------~~---~~l~~-~-------~~~v~~~~~~~~~~~l~~ad~--~v~~~g~~t~~Ea~a~G~P~v~~ 334 (412)
T 3otg_A 274 VLVASGPSL------DV---SGLGE-V-------PANVRLESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSF 334 (412)
T ss_dssp EEEECCSSC------CC---TTCCC-C-------CTTEEEESCCCHHHHGGGCSE--EEESCCHHHHHHHHHHTCCEEEC
T ss_pred EEEEECCCC------Ch---hhhcc-C-------CCcEEEeCCCCHHHHHhcCcE--EEECCchHHHHHHHHhCCCEEec
Confidence 999887542 00 11211 1 678999999999999999886 99999999999999999999999
Q ss_pred cccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHH
Q 011106 390 PMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVK 469 (493)
Q Consensus 390 P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~ 469 (493)
|...||..|+..+++. |+|..+.. ..+++++|.++|.++|+|+ ++++++.+.+..+. ...+ ..+
T Consensus 335 p~~~~q~~~~~~v~~~-g~g~~~~~---~~~~~~~l~~ai~~ll~~~----~~~~~~~~~~~~~~-------~~~~-~~~ 398 (412)
T 3otg_A 335 PWAGDSFANAQAVAQA-GAGDHLLP---DNISPDSVSGAAKRLLAEE----SYRAGARAVAAEIA-------AMPG-PDE 398 (412)
T ss_dssp CCSTTHHHHHHHHHHH-TSEEECCG---GGCCHHHHHHHHHHHHHCH----HHHHHHHHHHHHHH-------HSCC-HHH
T ss_pred CCchhHHHHHHHHHHc-CCEEecCc---ccCCHHHHHHHHHHHHhCH----HHHHHHHHHHHHHh-------cCCC-HHH
Confidence 9999999999999977 99999998 7789999999999999999 89999999988886 4443 666
Q ss_pred HHHHHHHHHH
Q 011106 470 AMDDFLSAAI 479 (493)
Q Consensus 470 ~~~~~~~~~~ 479 (493)
.++.+.+.+.
T Consensus 399 ~~~~~~~l~~ 408 (412)
T 3otg_A 399 VVRLLPGFAS 408 (412)
T ss_dssp HHTTHHHHHC
T ss_pred HHHHHHHHhc
Confidence 6666665543
No 20
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.97 E-value=6.7e-29 Score=243.60 Aligned_cols=313 Identities=17% Similarity=0.153 Sum_probs=197.5
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccc--hhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLN--IKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENC 81 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~--~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~ 81 (493)
|++||+|...++.||++|.++||++|++ +||+|+|+++... .+.+++ .++.++.++.. +++... ..
T Consensus 1 M~~~i~i~~GGTgGHi~palala~~L~~--~g~~V~~vg~~~g~e~~~v~~-----~g~~~~~i~~~----~~~~~~-~~ 68 (365)
T 3s2u_A 1 MKGNVLIMAGGTGGHVFPALACAREFQA--RGYAVHWLGTPRGIENDLVPK-----AGLPLHLIQVS----GLRGKG-LK 68 (365)
T ss_dssp --CEEEEECCSSHHHHHHHHHHHHHHHH--TTCEEEEEECSSSTHHHHTGG-----GTCCEEECC---------------
T ss_pred CCCcEEEEcCCCHHHHHHHHHHHHHHHh--CCCEEEEEECCchHhhchhhh-----cCCcEEEEECC----CcCCCC-HH
Confidence 3479999999999999999999999999 9999999987653 345555 56677777742 222110 00
Q ss_pred CCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcc--hhhHHHHHHcCCceEEEechhHHHHHHHhhhcc
Q 011106 82 DVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFF--GWTCGVAKELNVFHAIFSGSGSYGLACYYSFWT 159 (493)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~--~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~ 159 (493)
... . ....+. ........++++.+ ||+||++... .++..+|+.+|||+++.-...
T Consensus 69 ~~~-~-~~~~~~----~~~~~~~~~l~~~~-----PDvVi~~g~~~s~p~~laA~~~~iP~vihe~n~------------ 125 (365)
T 3s2u_A 69 SLV-K-APLELL----KSLFQALRVIRQLR-----PVCVLGLGGYVTGPGGLAARLNGVPLVIHEQNA------------ 125 (365)
T ss_dssp ------CHHHHH----HHHHHHHHHHHHHC-----CSEEEECSSSTHHHHHHHHHHTTCCEEEEECSS------------
T ss_pred HHH-H-HHHHHH----HHHHHHHHHHHhcC-----CCEEEEcCCcchHHHHHHHHHcCCCEEEEecch------------
Confidence 000 0 001111 22245667888888 9999998443 355678999999998753211
Q ss_pred cCCCCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhcCC
Q 011106 160 NLPHNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKLGL 239 (493)
Q Consensus 160 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~ 239 (493)
.|++.. +++.+. +.. +..++++..+ ...
T Consensus 126 -------------~~G~~n-----------------------r~l~~~------a~~-v~~~~~~~~~---------~~~ 153 (365)
T 3s2u_A 126 -------------VAGTAN-----------------------RSLAPI------ARR-VCEAFPDTFP---------ASD 153 (365)
T ss_dssp -------------SCCHHH-----------------------HHHGGG------CSE-EEESSTTSSC---------C--
T ss_pred -------------hhhhHH-----------------------Hhhccc------cce-eeeccccccc---------CcC
Confidence 122110 000000 111 1222322111 124
Q ss_pred ceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhC----CCcEEEEEc
Q 011106 240 SVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEAS----GKNFIWVVR 315 (493)
Q Consensus 240 ~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~----~~~vi~~~~ 315 (493)
+..++|+........ .. .......+++++|+|..||.... .....+.+++... +..++|.++
T Consensus 154 k~~~~g~pvr~~~~~---------~~---~~~~~~~~~~~~ilv~gGs~g~~--~~~~~~~~al~~l~~~~~~~vi~~~G 219 (365)
T 3s2u_A 154 KRLTTGNPVRGELFL---------DA---HARAPLTGRRVNLLVLGGSLGAE--PLNKLLPEALAQVPLEIRPAIRHQAG 219 (365)
T ss_dssp -CEECCCCCCGGGCC---------CT---TSSCCCTTSCCEEEECCTTTTCS--HHHHHHHHHHHTSCTTTCCEEEEECC
T ss_pred cEEEECCCCchhhcc---------ch---hhhcccCCCCcEEEEECCcCCcc--ccchhhHHHHHhcccccceEEEEecC
Confidence 566777665443100 00 01111123356899999988643 2333455666653 445677776
Q ss_pred CCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccCh-HHhhccCCcCceeeccCchhHHHHHHhCCcEeccccc--
Q 011106 316 PPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQ-LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMA-- 392 (493)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq-~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~-- 392 (493)
... .+...+...+.+.++.+.+|+++ .++|+.+++ +|||+|.+|+.|++++|+|+|++|+.
T Consensus 220 ~~~--------------~~~~~~~~~~~~~~~~v~~f~~dm~~~l~~aDl--vI~raG~~Tv~E~~a~G~P~Ilip~p~~ 283 (365)
T 3s2u_A 220 RQH--------------AEITAERYRTVAVEADVAPFISDMAAAYAWADL--VICRAGALTVSELTAAGLPAFLVPLPHA 283 (365)
T ss_dssp TTT--------------HHHHHHHHHHTTCCCEEESCCSCHHHHHHHCSE--EEECCCHHHHHHHHHHTCCEEECC----
T ss_pred ccc--------------cccccceecccccccccccchhhhhhhhccceE--EEecCCcchHHHHHHhCCCeEEeccCCC
Confidence 431 12222222222668889999998 479999997 99999999999999999999999973
Q ss_pred --ccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCc
Q 011106 393 --AEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETD 437 (493)
Q Consensus 393 --~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~ 437 (493)
.+|..||+.+++. |+|+.++. ..++++.|.++|.++|+|++
T Consensus 284 ~~~~Q~~NA~~l~~~-G~a~~l~~---~~~~~~~L~~~i~~ll~d~~ 326 (365)
T 3s2u_A 284 IDDHQTRNAEFLVRS-GAGRLLPQ---KSTGAAELAAQLSEVLMHPE 326 (365)
T ss_dssp -CCHHHHHHHHHHTT-TSEEECCT---TTCCHHHHHHHHHHHHHCTH
T ss_pred CCcHHHHHHHHHHHC-CCEEEeec---CCCCHHHHHHHHHHHHCCHH
Confidence 5899999999988 99999988 88999999999999999993
No 21
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.95 E-value=9.6e-28 Score=209.40 Aligned_cols=165 Identities=25% Similarity=0.449 Sum_probs=141.3
Q ss_pred CCCChhhHHhhccCCCCCcEEEEeccCCc-CCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHH
Q 011106 261 GGTSIKFCKEWLDSKDENSVLYISFGSMN-TISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEER 339 (493)
Q Consensus 261 ~~~~~~~l~~~l~~~~~~~~V~vs~GS~~-~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 339 (493)
.+++++++.+|++..+++++|||++||.. ....+.+..++++++..+.+++|++++.. ++.+
T Consensus 4 ~~~l~~~~~~~l~~~~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~--------------~~~~--- 66 (170)
T 2o6l_A 4 AKPLPKEMEDFVQSSGENGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGNK--------------PDTL--- 66 (170)
T ss_dssp CCCCCHHHHHHHHTTTTTCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSSC--------------CTTC---
T ss_pred CCCCCHHHHHHHHcCCCCCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCcC--------------cccC---
Confidence 35678899999987666789999999996 45678888899999988899999987541 1111
Q ss_pred hccCCCCeEEeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCc
Q 011106 340 IRDSKRGLLMKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCE 419 (493)
Q Consensus 340 ~~~~~~nv~~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~ 419 (493)
++|+++.+|+||.++|.|+..++||||||+||++|++++|+|+|++|...||..||+++++. |+|+.++. ..
T Consensus 67 ----~~~v~~~~~~~~~~~l~~~~ad~~I~~~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~-g~g~~~~~---~~ 138 (170)
T 2o6l_A 67 ----GLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKAR-GAAVRVDF---NT 138 (170)
T ss_dssp ----CTTEEEESSCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTT-TSEEECCT---TT
T ss_pred ----CCcEEEecCCCHHHHhcCCCcCEEEEcCCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHc-CCeEEecc---cc
Confidence 57899999999999996666667999999999999999999999999999999999999976 99999987 77
Q ss_pred cCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Q 011106 420 VKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIK 454 (493)
Q Consensus 420 ~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~ 454 (493)
++.++|.++|.++|+|+ +|+++++++++.++
T Consensus 139 ~~~~~l~~~i~~ll~~~----~~~~~a~~~~~~~~ 169 (170)
T 2o6l_A 139 MSSTDLLNALKRVINDP----SYKENVMKLSRIQH 169 (170)
T ss_dssp CCHHHHHHHHHHHHHCH----HHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHcCH----HHHHHHHHHHHHhh
Confidence 89999999999999998 89999999999886
No 22
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.87 E-value=5.4e-20 Score=180.59 Aligned_cols=345 Identities=12% Similarity=0.123 Sum_probs=206.2
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccc--hhhhhccCCCCCCceEEeccCCCCCCCCCCCC
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLN--IKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNS 78 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~--~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~ 78 (493)
|+++++||++++.+..||..+++.||+.|.+ +||+|++++.... ...+.+ .+++++.++.. .+...
T Consensus 2 M~~m~mkIl~~~~~~gG~~~~~~~la~~L~~--~G~~V~v~~~~~~~~~~~~~~-----~g~~~~~~~~~----~~~~~- 69 (364)
T 1f0k_A 2 MSGQGKRLMVMAGGTGGHVFPGLAVAHHLMA--QGWQVRWLGTADRMEADLVPK-----HGIEIDFIRIS----GLRGK- 69 (364)
T ss_dssp -----CEEEEECCSSHHHHHHHHHHHHHHHT--TTCEEEEEECTTSTHHHHGGG-----GTCEEEECCCC----CCTTC-
T ss_pred CCCCCcEEEEEeCCCccchhHHHHHHHHHHH--cCCEEEEEecCCcchhhhccc-----cCCceEEecCC----ccCcC-
Confidence 4533489999998888999999999999999 9999999997653 233443 46677776642 11110
Q ss_pred CCCCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcc--hhhHHHHHHcCCceEEEechhHHHHHHHhh
Q 011106 79 ENCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFF--GWTCGVAKELNVFHAIFSGSGSYGLACYYS 156 (493)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~--~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~ 156 (493)
.....+..... .......+..++++.+ ||+|+++... ..+..+++.+|+|++......
T Consensus 70 -----~~~~~~~~~~~-~~~~~~~l~~~l~~~~-----pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~--------- 129 (364)
T 1f0k_A 70 -----GIKALIAAPLR-IFNAWRQARAIMKAYK-----PDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNG--------- 129 (364)
T ss_dssp -----CHHHHHTCHHH-HHHHHHHHHHHHHHHC-----CSEEEECSSTTHHHHHHHHHHTTCCEEEEECSS---------
T ss_pred -----ccHHHHHHHHH-HHHHHHHHHHHHHhcC-----CCEEEEeCCcCchHHHHHHHHcCCCEEEEecCC---------
Confidence 00111100111 1123345667777777 9999998543 345678889999998653211
Q ss_pred hcccCCCCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHh
Q 011106 157 FWTNLPHNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRK 236 (493)
Q Consensus 157 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~ 236 (493)
.++. ...++. ..++.+++.+ ...
T Consensus 130 ----------------~~~~-----------------------~~~~~~------~~~d~v~~~~-~~~----------- 152 (364)
T 1f0k_A 130 ----------------IAGL-----------------------TNKWLA------KIATKVMQAF-PGA----------- 152 (364)
T ss_dssp ----------------SCCH-----------------------HHHHHT------TTCSEEEESS-TTS-----------
T ss_pred ----------------CCcH-----------------------HHHHHH------HhCCEEEecC-hhh-----------
Confidence 0000 000000 0122222221 111
Q ss_pred cCCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhC--CCcEEEEE
Q 011106 237 LGLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEAS--GKNFIWVV 314 (493)
Q Consensus 237 ~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~--~~~vi~~~ 314 (493)
++ ++.++|........ .... ....+...+++++|++..|+.. .......++++++.. +.++++.+
T Consensus 153 ~~-~~~~i~n~v~~~~~---------~~~~-~~~~~~~~~~~~~il~~~g~~~--~~k~~~~li~a~~~l~~~~~~l~i~ 219 (364)
T 1f0k_A 153 FP-NAEVVGNPVRTDVL---------ALPL-PQQRLAGREGPVRVLVVGGSQG--ARILNQTMPQVAAKLGDSVTIWHQS 219 (364)
T ss_dssp SS-SCEECCCCCCHHHH---------TSCC-HHHHHTTCCSSEEEEEECTTTC--CHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred cC-CceEeCCccchhhc---------ccch-hhhhcccCCCCcEEEEEcCchH--hHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 22 45566644322200 0000 1112222233557888888875 344445566776664 45656666
Q ss_pred cCCCCCCCCcchhcccCCchhHHHHhcc-CCCCeEEeeccCh-HHhhccCCcCceeeccCchhHHHHHHhCCcEeccccc
Q 011106 315 RPPIGFDINSEFRASEWLPEGFEERIRD-SKRGLLMKNWAPQ-LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMA 392 (493)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~nv~~~~~~pq-~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~ 392 (493)
|... .+.+.+...+ +-++|.+.+|+++ .++++.+++ +|+++|.+++.||+++|+|+|+.|..
T Consensus 220 G~~~--------------~~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~--~v~~sg~~~~~EAma~G~Pvi~~~~~ 283 (364)
T 1f0k_A 220 GKGS--------------QQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADV--VVCRSGALTVSEIAAAGLPALFVPFQ 283 (364)
T ss_dssp CTTC--------------HHHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSE--EEECCCHHHHHHHHHHTCCEEECCCC
T ss_pred CCch--------------HHHHHHHHhhcCCCceEEecchhhHHHHHHhCCE--EEECCchHHHHHHHHhCCCEEEeeCC
Confidence 6431 1222222111 1358999999955 789999887 99999989999999999999999987
Q ss_pred ---ccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHH
Q 011106 393 ---AEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVK 469 (493)
Q Consensus 393 ---~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~ 469 (493)
.||..|++.+.+. |.|..++. ..++.++++++|.++ |+ +.+++..+-+..+ ....+..+
T Consensus 284 g~~~~q~~~~~~~~~~-g~g~~~~~---~d~~~~~la~~i~~l--~~----~~~~~~~~~~~~~--------~~~~~~~~ 345 (364)
T 1f0k_A 284 HKDRQQYWNALPLEKA-GAAKIIEQ---PQLSVDAVANTLAGW--SR----ETLLTMAERARAA--------SIPDATER 345 (364)
T ss_dssp CTTCHHHHHHHHHHHT-TSEEECCG---GGCCHHHHHHHHHTC--CH----HHHHHHHHHHHHT--------CCTTHHHH
T ss_pred CCchhHHHHHHHHHhC-CcEEEecc---ccCCHHHHHHHHHhc--CH----HHHHHHHHHHHHh--------hccCHHHH
Confidence 7999999999977 99999887 667799999999988 66 4444433333222 22444555
Q ss_pred HHHHHHHHHHhh
Q 011106 470 AMDDFLSAAISM 481 (493)
Q Consensus 470 ~~~~~~~~~~~~ 481 (493)
.++.+.+.+++.
T Consensus 346 ~~~~~~~~y~~~ 357 (364)
T 1f0k_A 346 VANEVSRVARAL 357 (364)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH
Confidence 666666655543
No 23
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=99.68 E-value=5.8e-15 Score=137.38 Aligned_cols=117 Identities=13% Similarity=0.103 Sum_probs=89.1
Q ss_pred CcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChH-
Q 011106 278 NSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQL- 356 (493)
Q Consensus 278 ~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~- 356 (493)
.+.|+|++|.... ......+++++.... ++.++++... ...+.+..... ..+|+.+..|++++
T Consensus 157 ~~~ILv~~GG~d~--~~l~~~vl~~L~~~~-~i~vv~G~~~------------~~~~~l~~~~~-~~~~v~v~~~~~~m~ 220 (282)
T 3hbm_A 157 KYDFFICMGGTDI--KNLSLQIASELPKTK-IISIATSSSN------------PNLKKLQKFAK-LHNNIRLFIDHENIA 220 (282)
T ss_dssp CEEEEEECCSCCT--TCHHHHHHHHSCTTS-CEEEEECTTC------------TTHHHHHHHHH-TCSSEEEEESCSCHH
T ss_pred CCeEEEEECCCch--hhHHHHHHHHhhcCC-CEEEEECCCc------------hHHHHHHHHHh-hCCCEEEEeCHHHHH
Confidence 5589999997542 235556777776644 5777776542 12233322221 13589999999985
Q ss_pred HhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeec
Q 011106 357 EVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVAR 414 (493)
Q Consensus 357 ~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~ 414 (493)
++++.+++ +|++|| +|++|+++.|+|+|++|...+|..||+.+++. |++..+..
T Consensus 221 ~~m~~aDl--vI~~gG-~T~~E~~~~g~P~i~ip~~~~Q~~nA~~l~~~-G~~~~~~~ 274 (282)
T 3hbm_A 221 KLMNESNK--LIISAS-SLVNEALLLKANFKAICYVKNQESTATWLAKK-GYEVEYKY 274 (282)
T ss_dssp HHHHTEEE--EEEESS-HHHHHHHHTTCCEEEECCSGGGHHHHHHHHHT-TCEEECGG
T ss_pred HHHHHCCE--EEECCc-HHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHC-CCEEEcch
Confidence 69999887 999999 89999999999999999999999999999977 99998865
No 24
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=99.61 E-value=1.7e-15 Score=135.09 Aligned_cols=134 Identities=15% Similarity=0.115 Sum_probs=95.8
Q ss_pred CCCcEEEEeccCCcCCCHHHHHHH-----HHHHHhCC-CcEEEEEcCCCCCCCCcchhcccCCchhHHHHh---------
Q 011106 276 DENSVLYISFGSMNTISASQMMQL-----AMALEASG-KNFIWVVRPPIGFDINSEFRASEWLPEGFEERI--------- 340 (493)
Q Consensus 276 ~~~~~V~vs~GS~~~~~~~~~~~i-----~~al~~~~-~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------- 340 (493)
+++++|||+.||... -.+.+..+ +++|...+ .++++.+|... ...........
T Consensus 26 ~~~~~VlVtgGS~~~-~n~li~~vl~~~~l~~L~~~~~~~vv~q~G~~~-----------~~~~~~~~~~~~~~~~~~l~ 93 (224)
T 2jzc_A 26 IEEKALFVTCGATVP-FPKLVSCVLSDEFCQELIQYGFVRLIIQFGRNY-----------SSEFEHLVQERGGQRESQKI 93 (224)
T ss_dssp CCSCCEEEECCSCCS-CHHHHHHHTSHHHHHHHHTTTCCCEEECCCSSS-----------CCCCCSHHHHHTCEECSCCC
T ss_pred CCCCEEEEEcCCchH-HHHHHHHHHHHHHHHHHhcCCCeEEEEEECCCc-----------hhhHHHHHHhhhcccccccc
Confidence 446799999999742 24444444 48888877 78999998653 00011110000
Q ss_pred ----------------ccCCCCeEEeeccChH-Hhhc-cCCcCceeeccCchhHHHHHHhCCcEeccccc----ccchhh
Q 011106 341 ----------------RDSKRGLLMKNWAPQL-EVLS-HRATCAFLSHCGWNSVLEALIHGVPIIGWPMA----AEQFFN 398 (493)
Q Consensus 341 ----------------~~~~~nv~~~~~~pq~-~lL~-~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~----~DQ~~n 398 (493)
....-++.+.+|+++. ++|+ .+++ +|||||+||++|++++|+|+|++|.. .||..|
T Consensus 94 p~~~~~~~~~~~~~~~~~~~~~v~v~~f~~~m~~~l~~~Adl--vIshaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~n 171 (224)
T 2jzc_A 94 PIDQFGCGDTARQYVLMNGKLKVIGFDFSTKMQSIIRDYSDL--VISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQI 171 (224)
T ss_dssp SSCTTCTTCSCEEEESTTTSSEEEECCSSSSHHHHHHHHCSC--EEESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHH
T ss_pred ccccccccccccccccccCCceEEEeeccchHHHHHHhcCCE--EEECCcHHHHHHHHHhCCCEEEEcCcccccchHHHH
Confidence 0001245677888885 7999 9997 99999999999999999999999974 369999
Q ss_pred HHHHhhhhceeEEeecCCCCccCHHHHHHHHHHH
Q 011106 399 AKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELV 432 (493)
Q Consensus 399 a~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~ 432 (493)
|+++++. |+|+.+ +++.|.++|.++
T Consensus 172 A~~l~~~-G~~~~~--------~~~~L~~~i~~l 196 (224)
T 2jzc_A 172 ADKFVEL-GYVWSC--------APTETGLIAGLR 196 (224)
T ss_dssp HHHHHHH-SCCCEE--------CSCTTTHHHHHH
T ss_pred HHHHHHC-CCEEEc--------CHHHHHHHHHHH
Confidence 9999977 998654 456677777776
No 25
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.36 E-value=9.4e-12 Score=122.23 Aligned_cols=130 Identities=13% Similarity=0.159 Sum_probs=82.8
Q ss_pred CcEEEEeccCCcCCCHHHHHHHHHHHHh-----CCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeec
Q 011106 278 NSVLYISFGSMNTISASQMMQLAMALEA-----SGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNW 352 (493)
Q Consensus 278 ~~~V~vs~GS~~~~~~~~~~~i~~al~~-----~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~ 352 (493)
+++|+++.|...... .+..+++|++. .+..+++..+.+. .+.+.+..... ..++|++.++
T Consensus 198 ~~~vl~~~gr~~~~k--~~~~ll~a~~~l~~~~~~~~lv~~~g~~~------------~~~~~l~~~~~-~~~~v~~~g~ 262 (376)
T 1v4v_A 198 GPYVTVTMHRRENWP--LLSDLAQALKRVAEAFPHLTFVYPVHLNP------------VVREAVFPVLK-GVRNFVLLDP 262 (376)
T ss_dssp SCEEEECCCCGGGGG--GHHHHHHHHHHHHHHCTTSEEEEECCSCH------------HHHHHHHHHHT-TCTTEEEECC
T ss_pred CCEEEEEeCcccchH--HHHHHHHHHHHHHhhCCCeEEEEECCCCH------------HHHHHHHHHhc-cCCCEEEECC
Confidence 457777777553221 34445566554 2445554444220 01112222111 1358888866
Q ss_pred cCh---HHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHH
Q 011106 353 APQ---LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKI 429 (493)
Q Consensus 353 ~pq---~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai 429 (493)
+++ .++++.+++ ||+++| |.+.||+++|+|+|+.+...++... .+. |.|+.++ .++++|.++|
T Consensus 263 ~g~~~~~~~~~~ad~--~v~~S~-g~~lEA~a~G~PvI~~~~~~~~~~~----~~~-g~g~lv~------~d~~~la~~i 328 (376)
T 1v4v_A 263 LEYGSMAALMRASLL--LVTDSG-GLQEEGAALGVPVVVLRNVTERPEG----LKA-GILKLAG------TDPEGVYRVV 328 (376)
T ss_dssp CCHHHHHHHHHTEEE--EEESCH-HHHHHHHHTTCCEEECSSSCSCHHH----HHH-TSEEECC------SCHHHHHHHH
T ss_pred CCHHHHHHHHHhCcE--EEECCc-CHHHHHHHcCCCEEeccCCCcchhh----hcC-CceEECC------CCHHHHHHHH
Confidence 655 578888887 888883 4466999999999998876666652 336 8887663 3899999999
Q ss_pred HHHhcCC
Q 011106 430 ELVMNET 436 (493)
Q Consensus 430 ~~~l~~~ 436 (493)
.++|+|+
T Consensus 329 ~~ll~d~ 335 (376)
T 1v4v_A 329 KGLLENP 335 (376)
T ss_dssp HHHHTCH
T ss_pred HHHHhCh
Confidence 9999987
No 26
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=99.29 E-value=1.8e-09 Score=106.38 Aligned_cols=354 Identities=10% Similarity=-0.024 Sum_probs=185.3
Q ss_pred CCCCCcEEEEECC--C--CcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhcc-CCCCCCceEEeccCCCCCCCCC
Q 011106 1 MAQSKENIVMFPF--M--AQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSS-LPPNSSIDLHEIPFNSSSHGLP 75 (493)
Q Consensus 1 m~~~~~~il~~~~--~--~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~-~~~~~~i~~~~i~~~~~~~~l~ 75 (493)
|. +++||++++. + ..|.-.-+..|++.| +||+|++++........... .. .++.+..++.. ..
T Consensus 1 M~-~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L----~g~~v~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~-- 68 (394)
T 3okp_A 1 MS-ASRKTLVVTNDFPPRIGGIQSYLRDFIATQ----DPESIVVFASTQNAEEAHAYDKT--LDYEVIRWPRS---VM-- 68 (394)
T ss_dssp ----CCCEEEEESCCTTSCSHHHHHHHHHHTTS----CGGGEEEEEECSSHHHHHHHHTT--CSSEEEEESSS---SC--
T ss_pred CC-CCceEEEEeCccCCccchHHHHHHHHHHHh----cCCeEEEEECCCCccchhhhccc--cceEEEEcccc---cc--
Confidence 54 5678999874 3 467778888888888 49999999876543311110 11 56777777632 00
Q ss_pred CCCCCCCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcch--hhHHHHHHcCCceEEEechhHHHHHH
Q 011106 76 PNSENCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFG--WTCGVAKELNVFHAIFSGSGSYGLAC 153 (493)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~--~~~~~A~~lgiP~i~~~~~~~~~~~~ 153 (493)
... . .....+.+++++.+ ||+|++..... ....+++.+++|.+++........
T Consensus 69 --------~~~---~-------~~~~~l~~~~~~~~-----~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~-- 123 (394)
T 3okp_A 69 --------LPT---P-------TTAHAMAEIIRERE-----IDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEVG-- 123 (394)
T ss_dssp --------CSC---H-------HHHHHHHHHHHHTT-----CSEEEESSCTTGGGGHHHHHHTTCSEEEEECCSTHHH--
T ss_pred --------ccc---h-------hhHHHHHHHHHhcC-----CCEEEECCcchHHHHHHHHHhcCCCcEEEEeccchhh--
Confidence 000 0 22345667778777 99999864433 455678889998555433321100
Q ss_pred HhhhcccCCCCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHH
Q 011106 154 YYSFWTNLPHNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYL 233 (493)
Q Consensus 154 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~ 233 (493)
. .... ....... .....++.+++.+-. ..+.+
T Consensus 124 -~---------------------------~~~~------------~~~~~~~---~~~~~~d~ii~~s~~-----~~~~~ 155 (394)
T 3okp_A 124 -W---------------------------SMLP------------GSRQSLR---KIGTEVDVLTYISQY-----TLRRF 155 (394)
T ss_dssp -H---------------------------TTSH------------HHHHHHH---HHHHHCSEEEESCHH-----HHHHH
T ss_pred -h---------------------------hhcc------------hhhHHHH---HHHHhCCEEEEcCHH-----HHHHH
Confidence 0 0000 0000000 011234445544432 12223
Q ss_pred HHhc--CCceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCC-CHHHHHHHHHHHHhC--CC
Q 011106 234 KRKL--GLSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTI-SASQMMQLAMALEAS--GK 308 (493)
Q Consensus 234 ~~~~--~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~-~~~~~~~i~~al~~~--~~ 308 (493)
...+ ..++..|..-....... .........+.+.+.-.+ +..+++..|+.... ..+.+-..+..+... +.
T Consensus 156 ~~~~~~~~~~~vi~ngv~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~ 230 (394)
T 3okp_A 156 KSAFGSHPTFEHLPSGVDVKRFT----PATPEDKSATRKKLGFTD-TTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDA 230 (394)
T ss_dssp HHHHCSSSEEEECCCCBCTTTSC----CCCHHHHHHHHHHTTCCT-TCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCCCCCeEEecCCcCHHHcC----CCCchhhHHHHHhcCCCc-CceEEEEEeccccccCHHHHHHHHHHHHhhCCCe
Confidence 3322 23555665433222000 000001123333333222 33566677876421 223333333333332 44
Q ss_pred cEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHH---hhccCCcCceee-----------ccCch
Q 011106 309 NFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLE---VLSHRATCAFLS-----------HCGWN 374 (493)
Q Consensus 309 ~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~---lL~~~~v~~~I~-----------HgG~g 374 (493)
+++++ |... ..+.+......-.++|.+.+|+|+.+ +++.+++ +|. -|.-+
T Consensus 231 ~l~i~-G~g~-------------~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~v~ps~~~~~~~~~e~~~~ 294 (394)
T 3okp_A 231 QLLIV-GSGR-------------YESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADI--FAMPARTRGGGLDVEGLGI 294 (394)
T ss_dssp EEEEE-CCCT-------------THHHHHHHTGGGGGGEEEEESCCHHHHHHHHHHCSE--EEECCCCBGGGTBCCSSCH
T ss_pred EEEEE-cCch-------------HHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHhCCE--EEecCccccccccccccCc
Confidence 54443 3221 11222211110147899999998644 6788887 665 45556
Q ss_pred hHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Q 011106 375 SVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIK 454 (493)
Q Consensus 375 s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~ 454 (493)
++.||+++|+|+|+.+. ......+. . |.|..++. -+.+++.++|.++++|++..+.+.+++++....
T Consensus 295 ~~~Ea~a~G~PvI~~~~----~~~~e~i~-~-~~g~~~~~-----~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~-- 361 (394)
T 3okp_A 295 VYLEAQACGVPVIAGTS----GGAPETVT-P-ATGLVVEG-----SDVDKLSELLIELLDDPIRRAAMGAAGRAHVEA-- 361 (394)
T ss_dssp HHHHHHHTTCCEEECSS----TTGGGGCC-T-TTEEECCT-----TCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHcCCCEEEeCC----CChHHHHh-c-CCceEeCC-----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--
Confidence 88999999999999764 33334444 5 56777654 589999999999999884434444555443332
Q ss_pred HhhhccccCCCChHHHHHHHHHHHHhhc
Q 011106 455 NAMKDEEGCRGSSVKAMDDFLSAAISMK 482 (493)
Q Consensus 455 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 482 (493)
.-+....++.+++.+++..
T Consensus 362 ---------~~s~~~~~~~~~~~~~~~~ 380 (394)
T 3okp_A 362 ---------EWSWEIMGERLTNILQSEP 380 (394)
T ss_dssp ---------HTBHHHHHHHHHHHHHSCC
T ss_pred ---------hCCHHHHHHHHHHHHHHhc
Confidence 1235566677777766654
No 27
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=99.28 E-value=3.6e-09 Score=105.69 Aligned_cols=114 Identities=10% Similarity=-0.040 Sum_probs=79.7
Q ss_pred CCCeEEeeccChHH---hhccCCcCceeec----cCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCC
Q 011106 344 KRGLLMKNWAPQLE---VLSHRATCAFLSH----CGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGK 416 (493)
Q Consensus 344 ~~nv~~~~~~pq~~---lL~~~~v~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 416 (493)
++++.+..|+++.+ +++.+++ +|.- |--+++.||+++|+|+|+.. .......+. . |.|..++.
T Consensus 310 ~~~~~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~EAma~G~Pvi~s~----~~~~~e~~~-~-~~g~~~~~-- 379 (439)
T 3fro_A 310 GNVKVITEMLSREFVRELYGSVDF--VIIPSYFEPFGLVALEAMCLGAIPIASA----VGGLRDIIT-N-ETGILVKA-- 379 (439)
T ss_dssp TTEEEECSCCCHHHHHHHHTTCSE--EEECBSCCSSCHHHHHHHHTTCEEEEES----STHHHHHCC-T-TTCEEECT--
T ss_pred CCEEEEcCCCCHHHHHHHHHHCCE--EEeCCCCCCccHHHHHHHHCCCCeEEcC----CCCcceeEE-c-CceEEeCC--
Confidence 45566778899854 6788887 5522 33468999999999999864 344555554 5 78888865
Q ss_pred CCccCHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHhhc
Q 011106 417 TCEVKHEDVVAKIELVMN-ETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAISMK 482 (493)
Q Consensus 417 ~~~~~~~~l~~ai~~~l~-~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 482 (493)
-+.++++++|.++++ +++..+.+.+++++..+.+ +....++.+++.+++..
T Consensus 380 ---~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~------------s~~~~~~~~~~~~~~~~ 431 (439)
T 3fro_A 380 ---GDPGELANAILKALELSRSDLSKFRENCKKRAMSF------------SWEKSAERYVKAYTGSI 431 (439)
T ss_dssp ---TCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHTS------------CHHHHHHHHHHHHHTCS
T ss_pred ---CCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC------------cHHHHHHHHHHHHHHHH
Confidence 589999999999999 7755556666666655433 25556677776666554
No 28
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=99.26 E-value=1.9e-09 Score=107.92 Aligned_cols=98 Identities=9% Similarity=0.038 Sum_probs=71.8
Q ss_pred CCCeEEeeccCh---HHhhccCCcCceeec----cCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCC
Q 011106 344 KRGLLMKNWAPQ---LEVLSHRATCAFLSH----CGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGK 416 (493)
Q Consensus 344 ~~nv~~~~~~pq---~~lL~~~~v~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 416 (493)
.++|.+.+++|+ ..+++.+++ +|.- |.-.++.||+++|+|+|+.+. ......+... +.|+.++.
T Consensus 305 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~-- 375 (438)
T 3c48_A 305 EKRIRFLDPRPPSELVAVYRAADI--VAVPSFNESFGLVAMEAQASGTPVIAARV----GGLPIAVAEG-ETGLLVDG-- 375 (438)
T ss_dssp TTTEEEECCCCHHHHHHHHHHCSE--EEECCSCCSSCHHHHHHHHTTCCEEEESC----TTHHHHSCBT-TTEEEESS--
T ss_pred CCcEEEcCCCChHHHHHHHHhCCE--EEECccccCCchHHHHHHHcCCCEEecCC----CChhHHhhCC-CcEEECCC--
Confidence 468999999987 457888887 5543 334589999999999999753 4455556544 57877765
Q ss_pred CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 011106 417 TCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMI 453 (493)
Q Consensus 417 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~ 453 (493)
-+.++++++|.++++|++..+.+.+++++..+.+
T Consensus 376 ---~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 409 (438)
T 3c48_A 376 ---HSPHAWADALATLLDDDETRIRMGEDAVEHARTF 409 (438)
T ss_dssp ---CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhC
Confidence 5899999999999998844445666666665554
No 29
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.24 E-value=3.4e-11 Score=118.87 Aligned_cols=79 Identities=13% Similarity=0.204 Sum_probs=60.0
Q ss_pred CCCeEEeeccCh---HHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCcc
Q 011106 344 KRGLLMKNWAPQ---LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEV 420 (493)
Q Consensus 344 ~~nv~~~~~~pq---~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~ 420 (493)
.+++++.+++++ ..+++.+++ +|+-+| |.+.||.++|+|+|+..-..+++ . +.+. |.++.+. .
T Consensus 287 ~~~v~~~~~lg~~~~~~l~~~ad~--vv~~SG-g~~~EA~a~G~PvV~~~~~~~~~---e-~v~~-G~~~lv~------~ 352 (396)
T 3dzc_A 287 VSNIVLIEPQQYLPFVYLMDRAHI--ILTDSG-GIQEEAPSLGKPVLVMRETTERP---E-AVAA-GTVKLVG------T 352 (396)
T ss_dssp CTTEEEECCCCHHHHHHHHHHCSE--EEESCS-GGGTTGGGGTCCEEECCSSCSCH---H-HHHH-TSEEECT------T
T ss_pred CCCEEEeCCCCHHHHHHHHHhcCE--EEECCc-cHHHHHHHcCCCEEEccCCCcch---H-HHHc-CceEEcC------C
Confidence 468888777753 568888886 999887 66679999999999975555543 2 3336 8775443 2
Q ss_pred CHHHHHHHHHHHhcCC
Q 011106 421 KHEDVVAKIELVMNET 436 (493)
Q Consensus 421 ~~~~l~~ai~~~l~~~ 436 (493)
++++|.+++.++|+|+
T Consensus 353 d~~~l~~ai~~ll~d~ 368 (396)
T 3dzc_A 353 NQQQICDALSLLLTDP 368 (396)
T ss_dssp CHHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHcCH
Confidence 6999999999999988
No 30
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.21 E-value=8.5e-11 Score=116.15 Aligned_cols=79 Identities=13% Similarity=0.109 Sum_probs=61.1
Q ss_pred CCCeEEeeccCh---HHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCcc
Q 011106 344 KRGLLMKNWAPQ---LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEV 420 (493)
Q Consensus 344 ~~nv~~~~~~pq---~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~ 420 (493)
.+++++.+++++ ..+++.+++ +|+-+|. .+.||.++|+|+|++|-..+++. .+ +. |.|+.+. .
T Consensus 281 ~~~v~l~~~l~~~~~~~l~~~ad~--vv~~SGg-~~~EA~a~g~PvV~~~~~~~~~e---~v-~~-g~~~lv~------~ 346 (403)
T 3ot5_A 281 HERIHLIEPLDAIDFHNFLRKSYL--VFTDSGG-VQEEAPGMGVPVLVLRDTTERPE---GI-EA-GTLKLIG------T 346 (403)
T ss_dssp CTTEEEECCCCHHHHHHHHHHEEE--EEECCHH-HHHHGGGTTCCEEECCSSCSCHH---HH-HH-TSEEECC------S
T ss_pred CCCEEEeCCCCHHHHHHHHHhcCE--EEECCcc-HHHHHHHhCCCEEEecCCCcchh---he-eC-CcEEEcC------C
Confidence 468999998874 567888886 8888752 23699999999999976666654 23 46 8776654 2
Q ss_pred CHHHHHHHHHHHhcCC
Q 011106 421 KHEDVVAKIELVMNET 436 (493)
Q Consensus 421 ~~~~l~~ai~~~l~~~ 436 (493)
++++|.+++.++|+|+
T Consensus 347 d~~~l~~ai~~ll~~~ 362 (403)
T 3ot5_A 347 NKENLIKEALDLLDNK 362 (403)
T ss_dssp CHHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHcCH
Confidence 8999999999999888
No 31
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=99.20 E-value=1.2e-08 Score=100.97 Aligned_cols=115 Identities=9% Similarity=0.057 Sum_probs=77.7
Q ss_pred CCCeEEeeccChH---HhhccCCcCceee----ccCch-hHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecC
Q 011106 344 KRGLLMKNWAPQL---EVLSHRATCAFLS----HCGWN-SVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARG 415 (493)
Q Consensus 344 ~~nv~~~~~~pq~---~lL~~~~v~~~I~----HgG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~ 415 (493)
.++|.+.+++++. .++..+++ +|. +.|++ ++.||+++|+|+|+.+. ......+... +.|..++.
T Consensus 262 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~- 333 (406)
T 2gek_A 262 AGHLRFLGQVDDATKASAMRSADV--YCAPHLGGESFGIVLVEAMAAGTAVVASDL----DAFRRVLADG-DAGRLVPV- 333 (406)
T ss_dssp GGGEEECCSCCHHHHHHHHHHSSE--EEECCCSCCSSCHHHHHHHHHTCEEEECCC----HHHHHHHTTT-TSSEECCT-
T ss_pred cCcEEEEecCCHHHHHHHHHHCCE--EEecCCCCCCCchHHHHHHHcCCCEEEecC----CcHHHHhcCC-CceEEeCC-
Confidence 3689999999974 68888887 553 34444 89999999999999765 4556666644 57777764
Q ss_pred CCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHhhc
Q 011106 416 KTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAISMK 482 (493)
Q Consensus 416 ~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 482 (493)
-+.+++.++|.++++|++..+.+.+++++..+ .-+....++.+.+.+++..
T Consensus 334 ----~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~------------~~s~~~~~~~~~~~~~~~~ 384 (406)
T 2gek_A 334 ----DDADGMAAALIGILEDDQLRAGYVARASERVH------------RYDWSVVSAQIMRVYETVS 384 (406)
T ss_dssp ----TCHHHHHHHHHHHHHCHHHHHHHHHHHHHHGG------------GGBHHHHHHHHHHHHHHHC
T ss_pred ----CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH------------hCCHHHHHHHHHHHHHHHH
Confidence 58899999999999988222233333333322 2334556666666655544
No 32
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.20 E-value=1.1e-10 Score=114.89 Aligned_cols=131 Identities=11% Similarity=0.159 Sum_probs=83.3
Q ss_pred CcEEEEeccCCcCCCHHHHHHHHHHHHh-----CCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeec
Q 011106 278 NSVLYISFGSMNTISASQMMQLAMALEA-----SGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNW 352 (493)
Q Consensus 278 ~~~V~vs~GS~~~~~~~~~~~i~~al~~-----~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~ 352 (493)
+++|+++.|....... .+..+++|+.. .+.++++..+.+ ..+.+.+.+... ..++|.+.++
T Consensus 205 ~~~vl~~~gr~~~~~k-g~~~li~a~~~l~~~~~~~~l~i~~g~~------------~~~~~~l~~~~~-~~~~v~~~g~ 270 (384)
T 1vgv_A 205 KKMILVTGHRRESFGR-GFEEICHALADIATTHQDIQIVYPVHLN------------PNVREPVNRILG-HVKNVILIDP 270 (384)
T ss_dssp SEEEEEECCCBSSCCH-HHHHHHHHHHHHHHHCTTEEEEEECCBC------------HHHHHHHHHHHT-TCTTEEEECC
T ss_pred CCEEEEEeCCccccch-HHHHHHHHHHHHHhhCCCeEEEEEcCCC------------HHHHHHHHHHhh-cCCCEEEeCC
Confidence 5578888887654322 34445555544 244555533321 001111211111 1368888666
Q ss_pred cCh---HHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHH
Q 011106 353 APQ---LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKI 429 (493)
Q Consensus 353 ~pq---~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai 429 (493)
+++ .++++.+++ ||+.+| +.+.||+++|+|+|+.+..++... +.+. |.|+.++. ++++|+++|
T Consensus 271 ~~~~~~~~~~~~ad~--~v~~Sg-~~~lEA~a~G~PvI~~~~~~~~~e----~v~~-g~g~lv~~------d~~~la~~i 336 (384)
T 1vgv_A 271 QEYLPFVWLMNHAWL--ILTDSG-GIQEEAPSLGKPVLVMRDTTERPE----AVTA-GTVRLVGT------DKQRIVEEV 336 (384)
T ss_dssp CCHHHHHHHHHHCSE--EEESSS-TGGGTGGGGTCCEEEESSCCSCHH----HHHH-TSEEEECS------SHHHHHHHH
T ss_pred CCHHHHHHHHHhCcE--EEECCc-chHHHHHHcCCCEEEccCCCCcch----hhhC-CceEEeCC------CHHHHHHHH
Confidence 664 567888887 888875 448899999999999987444332 3446 88877752 899999999
Q ss_pred HHHhcCC
Q 011106 430 ELVMNET 436 (493)
Q Consensus 430 ~~~l~~~ 436 (493)
.++++|+
T Consensus 337 ~~ll~d~ 343 (384)
T 1vgv_A 337 TRLLKDE 343 (384)
T ss_dssp HHHHHCH
T ss_pred HHHHhCh
Confidence 9999987
No 33
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=99.14 E-value=1.3e-07 Score=93.16 Aligned_cols=354 Identities=12% Similarity=0.066 Sum_probs=178.6
Q ss_pred CCcEEEEECCCC-cccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCC
Q 011106 4 SKENIVMFPFMA-QGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCD 82 (493)
Q Consensus 4 ~~~~il~~~~~~-~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~ 82 (493)
+++++....+|. .|.-.-...||+.|.+ +||+|++++....... .. .. .++.+..++.. ..+. ..
T Consensus 14 ~~~~~~~~~~p~~GG~~~~~~~la~~L~~--~G~~V~v~~~~~~~~~-~~-~~--~~i~~~~~~~~----~~~~----~~ 79 (394)
T 2jjm_A 14 MKLKIGITCYPSVGGSGVVGTELGKQLAE--RGHEIHFITSGLPFRL-NK-VY--PNIYFHEVTVN----QYSV----FQ 79 (394)
T ss_dssp -CCEEEEECCC--CHHHHHHHHHHHHHHH--TTCEEEEECSSCC-----C-CC--TTEEEECCCCC------------CC
T ss_pred heeeeehhcCCCCCCHHHHHHHHHHHHHh--CCCEEEEEeCCCCCcc-cc-cC--CceEEEecccc----cccc----cc
Confidence 356788888775 4566677899999999 9999999987532211 11 11 56666655532 1110 00
Q ss_pred CCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcch--hhHHHHH-Hc--CCceEEEechhHHHHHHHhhh
Q 011106 83 VLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFG--WTCGVAK-EL--NVFHAIFSGSGSYGLACYYSF 157 (493)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~--~~~~~A~-~l--giP~i~~~~~~~~~~~~~~~~ 157 (493)
.... .+ .....+.+++++.+ ||+|++..... ....++. .+ ++|++......... .
T Consensus 80 ~~~~----~~-----~~~~~l~~~l~~~~-----~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~----~-- 139 (394)
T 2jjm_A 80 YPPY----DL-----ALASKMAEVAQREN-----LDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDIT----V-- 139 (394)
T ss_dssp SCCH----HH-----HHHHHHHHHHHHHT-----CSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHH----T--
T ss_pred cccc----cH-----HHHHHHHHHHHHcC-----CCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCccc----c--
Confidence 0011 00 12245666777777 99999874332 2233443 44 59987754332110 0
Q ss_pred cccCCCCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHHHHhc
Q 011106 158 WTNLPHNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYLKRKL 237 (493)
Q Consensus 158 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~ 237 (493)
. +... . +..... ..+..++.+++.+-. ..+.+...+
T Consensus 140 ~----------------~~~~---~-----------------~~~~~~---~~~~~ad~ii~~s~~-----~~~~~~~~~ 175 (394)
T 2jjm_A 140 L----------------GSDP---S-----------------LNNLIR---FGIEQSDVVTAVSHS-----LINETHELV 175 (394)
T ss_dssp T----------------TTCT---T-----------------THHHHH---HHHHHSSEEEESCHH-----HHHHHHHHT
T ss_pred c----------------CCCH---H-----------------HHHHHH---HHHhhCCEEEECCHH-----HHHHHHHhh
Confidence 0 0000 0 000000 012234455544432 122233333
Q ss_pred C--CceeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHh----CCCcEE
Q 011106 238 G--LSVWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEA----SGKNFI 311 (493)
Q Consensus 238 ~--~~~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~----~~~~vi 311 (493)
+ .++..+..-...... .....+.+..-+.-.+ +..+++..|+.... ..+..++++++. .+.+++
T Consensus 176 ~~~~~~~vi~ngv~~~~~-------~~~~~~~~~~~~~~~~-~~~~i~~~G~~~~~--Kg~~~li~a~~~l~~~~~~~l~ 245 (394)
T 2jjm_A 176 KPNKDIQTVYNFIDERVY-------FKRDMTQLKKEYGISE-SEKILIHISNFRKV--KRVQDVVQAFAKIVTEVDAKLL 245 (394)
T ss_dssp CCSSCEEECCCCCCTTTC-------CCCCCHHHHHHTTCC----CEEEEECCCCGG--GTHHHHHHHHHHHHHSSCCEEE
T ss_pred CCcccEEEecCCccHHhc-------CCcchHHHHHHcCCCC-CCeEEEEeeccccc--cCHHHHHHHHHHHHhhCCCEEE
Confidence 2 356666544332200 0111223333332211 23455666776531 222333444433 244443
Q ss_pred EEEcCCCCCCCCcchhcccCCchhHHHHhccC--CCCeEEeeccCh-HHhhccCCcCcee----eccCchhHHHHHHhCC
Q 011106 312 WVVRPPIGFDINSEFRASEWLPEGFEERIRDS--KRGLLMKNWAPQ-LEVLSHRATCAFL----SHCGWNSVLEALIHGV 384 (493)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~nv~~~~~~pq-~~lL~~~~v~~~I----~HgG~gs~~eal~~Gv 384 (493)
.+|... ..+.+.....+- .++|.+.++..+ .++++.+++ +| ..|.-+++.||+++|+
T Consensus 246 -i~G~g~-------------~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv--~v~ps~~e~~~~~~~EAma~G~ 309 (394)
T 2jjm_A 246 -LVGDGP-------------EFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDL--MLLLSEKESFGLVLLEAMACGV 309 (394)
T ss_dssp -EECCCT-------------THHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSE--EEECCSCCSCCHHHHHHHHTTC
T ss_pred -EECCch-------------HHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCCE--EEeccccCCCchHHHHHHhcCC
Confidence 444321 112222211110 356777777655 678888887 66 4455678999999999
Q ss_pred cEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCC
Q 011106 385 PIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCR 464 (493)
Q Consensus 385 P~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~ 464 (493)
|+|+.+.. .....+... +.|..++. -+.++++++|.++++|++..+.+.+++++... +.
T Consensus 310 PvI~~~~~----~~~e~v~~~-~~g~~~~~-----~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~-----------~~ 368 (394)
T 2jjm_A 310 PCIGTRVG----GIPEVIQHG-DTGYLCEV-----GDTTGVADQAIQLLKDEELHRNMGERARESVY-----------EQ 368 (394)
T ss_dssp CEEEECCT----TSTTTCCBT-TTEEEECT-----TCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH-----------HH
T ss_pred CEEEecCC----ChHHHhhcC-CceEEeCC-----CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-----------Hh
Confidence 99997643 334444433 57777765 48899999999999988333344444444431 11
Q ss_pred CChHHHHHHHHHHHHhhc
Q 011106 465 GSSVKAMDDFLSAAISMK 482 (493)
Q Consensus 465 g~~~~~~~~~~~~~~~~~ 482 (493)
-+....++.+++.+++..
T Consensus 369 ~s~~~~~~~~~~~~~~~~ 386 (394)
T 2jjm_A 369 FRSEKIVSQYETIYYDVL 386 (394)
T ss_dssp SCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 235556666766666554
No 34
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=99.12 E-value=5.3e-09 Score=106.64 Aligned_cols=96 Identities=16% Similarity=0.048 Sum_probs=67.1
Q ss_pred CCCeEEeeccChH---HhhccC----CcCceeec---cC-chhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEe
Q 011106 344 KRGLLMKNWAPQL---EVLSHR----ATCAFLSH---CG-WNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEV 412 (493)
Q Consensus 344 ~~nv~~~~~~pq~---~lL~~~----~v~~~I~H---gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~ 412 (493)
.++|.+.+++|+. .+++.+ ++ +|.- -| -.++.||+++|+|+|+... ......+... ..|..+
T Consensus 334 ~~~V~~~G~v~~~~~~~~~~~a~~~~dv--~v~pS~~Eg~~~~~lEAma~G~PvI~s~~----~g~~e~v~~~-~~g~l~ 406 (499)
T 2r60_A 334 RGKVSMFPLNSQQELAGCYAYLASKGSV--FALTSFYEPFGLAPVEAMASGLPAVVTRN----GGPAEILDGG-KYGVLV 406 (499)
T ss_dssp BTTEEEEECCSHHHHHHHHHHHHHTTCE--EEECCSCBCCCSHHHHHHHTTCCEEEESS----BHHHHHTGGG-TSSEEE
T ss_pred CceEEECCCCCHHHHHHHHHhcCcCCCE--EEECcccCCCCcHHHHHHHcCCCEEEecC----CCHHHHhcCC-ceEEEe
Confidence 4679999999864 467778 76 5532 23 3588999999999998753 3455555533 478887
Q ss_pred ecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 011106 413 ARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVRE 451 (493)
Q Consensus 413 ~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~ 451 (493)
+. -+.++++++|.++++|++..+.+.+++++...
T Consensus 407 ~~-----~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 440 (499)
T 2r60_A 407 DP-----EDPEDIARGLLKAFESEETWSAYQEKGKQRVE 440 (499)
T ss_dssp CT-----TCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CC-----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 65 58999999999999988333344445544433
No 35
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.08 E-value=5.6e-09 Score=102.17 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=58.8
Q ss_pred CCeEEeeccCh---HHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccC
Q 011106 345 RGLLMKNWAPQ---LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVK 421 (493)
Q Consensus 345 ~nv~~~~~~pq---~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~ 421 (493)
++|.+.+++++ ..+++.+++ ||+.+| +.+.||+++|+|+|+.+..+.. .. +.+. |.|..++. +
T Consensus 263 ~~v~~~g~~~~~~~~~~~~~ad~--~v~~sg-~~~lEA~a~G~Pvi~~~~~~~~---~e-~v~~-g~g~~v~~------d 328 (375)
T 3beo_A 263 GRIHLIEPLDVIDFHNVAARSYL--MLTDSG-GVQEEAPSLGVPVLVLRDTTER---PE-GIEA-GTLKLAGT------D 328 (375)
T ss_dssp TTEEEECCCCHHHHHHHHHTCSE--EEECCH-HHHHHHHHHTCCEEECSSCCSC---HH-HHHT-TSEEECCS------C
T ss_pred CCEEEeCCCCHHHHHHHHHhCcE--EEECCC-ChHHHHHhcCCCEEEecCCCCC---ce-eecC-CceEEcCC------C
Confidence 68988777765 467888886 888763 4588999999999988543333 22 3446 87776642 8
Q ss_pred HHHHHHHHHHHhcCC
Q 011106 422 HEDVVAKIELVMNET 436 (493)
Q Consensus 422 ~~~l~~ai~~~l~~~ 436 (493)
+++|+++|.++++|+
T Consensus 329 ~~~la~~i~~ll~~~ 343 (375)
T 3beo_A 329 EETIFSLADELLSDK 343 (375)
T ss_dssp HHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhCh
Confidence 899999999999987
No 36
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=99.01 E-value=6.5e-08 Score=94.40 Aligned_cols=97 Identities=10% Similarity=0.160 Sum_probs=72.0
Q ss_pred CCCeEEeeccCh-HHhhccCCcCceee----ccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCC
Q 011106 344 KRGLLMKNWAPQ-LEVLSHRATCAFLS----HCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTC 418 (493)
Q Consensus 344 ~~nv~~~~~~pq-~~lL~~~~v~~~I~----HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~ 418 (493)
.++|.+.++..+ .++++.+++ +|. -|.-+++.||+++|+|+|+.+. ..+...++.. +.|..++.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~---- 320 (374)
T 2iw1_A 252 RSNVHFFSGRNDVSELMAAADL--LLHPAYQEAAGIVLLEAITAGLPVLTTAV----CGYAHYIADA-NCGTVIAE---- 320 (374)
T ss_dssp GGGEEEESCCSCHHHHHHHCSE--EEECCSCCSSCHHHHHHHHHTCCEEEETT----STTTHHHHHH-TCEEEECS----
T ss_pred CCcEEECCCcccHHHHHHhcCE--EEeccccCCcccHHHHHHHCCCCEEEecC----CCchhhhccC-CceEEeCC----
Confidence 368888888665 668888887 654 4566789999999999999764 3456677756 78888861
Q ss_pred ccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 011106 419 EVKHEDVVAKIELVMNETDKGKEIRRKVSEVRE 451 (493)
Q Consensus 419 ~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~ 451 (493)
.-+.+++.++|.++++|++..+.+.+++++..+
T Consensus 321 ~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~ 353 (374)
T 2iw1_A 321 PFSQEQLNEVLRKALTQSPLRMAWAENARHYAD 353 (374)
T ss_dssp SCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 358999999999999988444445555555544
No 37
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=98.97 E-value=2.5e-08 Score=96.20 Aligned_cols=125 Identities=17% Similarity=0.164 Sum_probs=79.0
Q ss_pred EEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChH---H
Q 011106 281 LYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQL---E 357 (493)
Q Consensus 281 V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~---~ 357 (493)
+++..|+.. +...+..++++++..+.+++++ |... ..+.+......-+++|.+.+|+++. +
T Consensus 164 ~i~~vG~~~--~~Kg~~~li~a~~~~~~~l~i~-G~g~-------------~~~~l~~~~~~~~~~v~~~g~~~~~~l~~ 227 (342)
T 2iuy_A 164 FLLFMGRVS--PHKGALEAAAFAHACGRRLVLA-GPAW-------------EPEYFDEITRRYGSTVEPIGEVGGERRLD 227 (342)
T ss_dssp CEEEESCCC--GGGTHHHHHHHHHHHTCCEEEE-SCCC-------------CHHHHHHHHHHHTTTEEECCCCCHHHHHH
T ss_pred EEEEEeccc--cccCHHHHHHHHHhcCcEEEEE-eCcc-------------cHHHHHHHHHHhCCCEEEeccCCHHHHHH
Confidence 344457664 2334556677777777776554 3321 1112211111004799999999985 6
Q ss_pred hhccCCcCceee--c-----------cC-chhHHHHHHhCCcEecccccccchhhHHHHhh--hhceeEEeecCCCCccC
Q 011106 358 VLSHRATCAFLS--H-----------CG-WNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQ--EMGVCVEVARGKTCEVK 421 (493)
Q Consensus 358 lL~~~~v~~~I~--H-----------gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~--~lG~G~~~~~~~~~~~~ 421 (493)
+++.+++ +|. . -| -+++.||+++|+|+|+... ......++. . +.|..++ . +
T Consensus 228 ~~~~adv--~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~----~~~~e~~~~~~~-~~g~~~~-----~-d 294 (342)
T 2iuy_A 228 LLASAHA--VLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGN----GCLAEIVPSVGE-VVGYGTD-----F-A 294 (342)
T ss_dssp HHHHCSE--EEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCT----TTHHHHGGGGEE-ECCSSSC-----C-C
T ss_pred HHHhCCE--EEECCcccccccccccccCccHHHHHHHhcCCCEEEcCC----CChHHHhcccCC-CceEEcC-----C-C
Confidence 8888887 552 2 33 3578999999999999865 345666654 3 4555442 4 8
Q ss_pred HHHHHHHHHHHhc
Q 011106 422 HEDVVAKIELVMN 434 (493)
Q Consensus 422 ~~~l~~ai~~~l~ 434 (493)
.++++++|.++++
T Consensus 295 ~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 295 PDEARRTLAGLPA 307 (342)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999886
No 38
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=98.96 E-value=2.4e-09 Score=104.85 Aligned_cols=318 Identities=14% Similarity=0.083 Sum_probs=166.7
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchh-hhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCC
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIK-KLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVL 84 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~-~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~ 84 (493)
.+++++. +++-.+.-+-.|.++|.+ + ++..++.+....+ .+..... .++. ++.+.. .+..+ ...
T Consensus 10 ~~~~~v~-GtRpe~~k~~p~~~~l~~--~-~~~~~~~tgqh~~~~~~~~~~--~~~~---i~~~~~--~l~~~---~~~- 74 (385)
T 4hwg_A 10 LKVMTIV-GTRPELIKLCCVISEFDK--H-TKHILVHTGQNYAYELNQVFF--DDMG---IRKPDY--FLEVA---ADN- 74 (385)
T ss_dssp CEEEEEE-CSHHHHHHHHHHHHHHHH--H-SEEEEEECSCHHHHHHTHHHH--C-CC---CCCCSE--ECCCC---CCC-
T ss_pred hheeEEE-EcCHhHHHHHHHHHHHHh--c-CCEEEEEeCCCCChhHHHHHH--hhCC---CCCCce--ecCCC---CCC-
Confidence 4565554 888888889999999988 6 8877777665544 2322111 1111 221100 01111 011
Q ss_pred ChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEE--CCcchhhHHHHHHcCCceEEEechhHHHHHHHhhhcccCC
Q 011106 85 PYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIA--DIFFGWTCGVAKELNVFHAIFSGSGSYGLACYYSFWTNLP 162 (493)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~--D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~~~~p 162 (493)
. ..........+.+++++.+ ||+|+. |..+.+++.+|..+|||++.+.... .
T Consensus 75 ~-------~~~~~~~~~~l~~~l~~~k-----PD~Vlv~gd~~~~~aalaA~~~~IPv~h~eagl--------------r 128 (385)
T 4hwg_A 75 T-------AKSIGLVIEKVDEVLEKEK-----PDAVLFYGDTNSCLSAIAAKRRKIPIFHMEAGN--------------R 128 (385)
T ss_dssp S-------HHHHHHHHHHHHHHHHHHC-----CSEEEEESCSGGGGGHHHHHHTTCCEEEESCCC--------------C
T ss_pred H-------HHHHHHHHHHHHHHHHhcC-----CcEEEEECCchHHHHHHHHHHhCCCEEEEeCCC--------------c
Confidence 1 1222334567888899988 999986 3344455889999999976552110 0
Q ss_pred CCCCCCCcccCCCCCcccccChhhchhhhhccCCCCchhhhhhccccccccCceEEeccccccchhHHHHH-HHhc-CCc
Q 011106 163 HNKVTSDEFVLPDFEEASRIHKSQLALNMLEADGTDSWSLFQGENFPAWVNSNGILCNTIEEFDQIGFIYL-KRKL-GLS 240 (493)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~-~~~~-~~~ 240 (493)
+ .+ . .+|. .. .+.... .-++.+++.+- . .-..+ +.-. +.+
T Consensus 129 ---s-~~-~---~~pe--------------------e~---nR~~~~--~~a~~~~~~te-~----~~~~l~~~G~~~~~ 170 (385)
T 4hwg_A 129 ---C-FD-Q---RVPE--------------------EI---NRKIID--HISDVNITLTE-H----ARRYLIAEGLPAEL 170 (385)
T ss_dssp ---C-SC-T---TSTH--------------------HH---HHHHHH--HHCSEEEESSH-H----HHHHHHHTTCCGGG
T ss_pred ---c-cc-c---cCcH--------------------HH---HHHHHH--hhhceeecCCH-H----HHHHHHHcCCCcCc
Confidence 0 00 0 0000 00 000000 01222222221 1 11111 1112 246
Q ss_pred eeeccccccccccccccCCCCCCChhhHHhhccCCCCCcEEEEeccCCcCCC-HHHHHHHHHHHHhC----CCcEEEEEc
Q 011106 241 VWPVGPILLSLENRANAGKEGGTSIKFCKEWLDSKDENSVLYISFGSMNTIS-ASQMMQLAMALEAS----GKNFIWVVR 315 (493)
Q Consensus 241 ~~~vGpl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~-~~~~~~i~~al~~~----~~~vi~~~~ 315 (493)
+.++|-...+...... .....+++.+.++-.+ ++.|+++.|...+.. .+.+..+++++... +..+|+...
T Consensus 171 I~vtGnp~~D~~~~~~----~~~~~~~~~~~lgl~~-~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~~~~vv~p~~ 245 (385)
T 4hwg_A 171 TFKSGSHMPEVLDRFM----PKILKSDILDKLSLTP-KQYFLISSHREENVDVKNNLKELLNSLQMLIKEYNFLIIFSTH 245 (385)
T ss_dssp EEECCCSHHHHHHHHH----HHHHHCCHHHHTTCCT-TSEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEEEEEC
T ss_pred EEEECCchHHHHHHhh----hhcchhHHHHHcCCCc-CCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 8888843322100000 0000122333333222 458888888754332 24556677777653 566776654
Q ss_pred CCCCCCCCcchhcccCCchhHHHHh---ccCCCCeEEeeccCh---HHhhccCCcCceeeccCchhHHHHHHhCCcEecc
Q 011106 316 PPIGFDINSEFRASEWLPEGFEERI---RDSKRGLLMKNWAPQ---LEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGW 389 (493)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~nv~~~~~~pq---~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~ 389 (493)
.. ..+.. ++. ....+++++.+.+++ ..+++++++ +|+-.|. .+.||.++|+|+|++
T Consensus 246 p~--------------~~~~l-~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adl--vvt~SGg-v~~EA~alG~Pvv~~ 307 (385)
T 4hwg_A 246 PR--------------TKKRL-EDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFC--ILSDSGT-ITEEASILNLPALNI 307 (385)
T ss_dssp HH--------------HHHHH-HTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSE--EEECCTT-HHHHHHHTTCCEEEC
T ss_pred hH--------------HHHHH-HHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcE--EEECCcc-HHHHHHHcCCCEEEc
Confidence 21 00000 000 000357887666654 568888886 8988775 468999999999999
Q ss_pred cccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 390 PMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 390 P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
+...+.+. .+ +. |.++.+. .++++|.+++.++|+|+
T Consensus 308 ~~~ter~e---~v-~~-G~~~lv~------~d~~~i~~ai~~ll~d~ 343 (385)
T 4hwg_A 308 REAHERPE---GM-DA-GTLIMSG------FKAERVLQAVKTITEEH 343 (385)
T ss_dssp SSSCSCTH---HH-HH-TCCEECC------SSHHHHHHHHHHHHTTC
T ss_pred CCCccchh---hh-hc-CceEEcC------CCHHHHHHHHHHHHhCh
Confidence 86544222 23 36 8776553 37999999999999988
No 39
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=98.87 E-value=1.9e-07 Score=92.61 Aligned_cols=112 Identities=16% Similarity=0.071 Sum_probs=72.7
Q ss_pred CCCeEEeeccC---h---HHhhccCCcCceeecc----CchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEee
Q 011106 344 KRGLLMKNWAP---Q---LEVLSHRATCAFLSHC----GWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVA 413 (493)
Q Consensus 344 ~~nv~~~~~~p---q---~~lL~~~~v~~~I~Hg----G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~ 413 (493)
.++|.+..|++ + .++++.+++ +|.-. .-.++.||+++|+|+|+.+. ..+...+... +.|..++
T Consensus 292 ~~~V~~~G~~~~~~~~~~~~~~~~ad~--~v~ps~~E~~~~~~lEAma~G~PvI~~~~----~g~~e~i~~~-~~g~l~~ 364 (416)
T 2x6q_A 292 DYDVKVLTNLIGVHAREVNAFQRASDV--ILQMSIREGFGLTVTEAMWKGKPVIGRAV----GGIKFQIVDG-ETGFLVR 364 (416)
T ss_dssp CTTEEEEEGGGTCCHHHHHHHHHHCSE--EEECCSSCSSCHHHHHHHHTTCCEEEESC----HHHHHHCCBT-TTEEEES
T ss_pred CCcEEEecccCCCCHHHHHHHHHhCCE--EEECCCcCCCccHHHHHHHcCCCEEEccC----CCChhheecC-CCeEEEC
Confidence 46899988775 2 457788887 55433 45588999999999999764 3455556533 5676552
Q ss_pred cCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHh
Q 011106 414 RGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAIS 480 (493)
Q Consensus 414 ~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 480 (493)
+.++++++|.++++|++..+.+.+++++.... .-+....++.+++.+++
T Consensus 365 -------d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~-----------~fs~~~~~~~~~~~~~~ 413 (416)
T 2x6q_A 365 -------DANEAVEVVLYLLKHPEVSKEMGAKAKERVRK-----------NFIITKHMERYLDILNS 413 (416)
T ss_dssp -------SHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-----------HTBHHHHHHHHHHHHHT
T ss_pred -------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-----------HcCHHHHHHHHHHHHHH
Confidence 78999999999999883333344444443321 12244555666655543
No 40
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.59 E-value=3.4e-05 Score=79.67 Aligned_cols=120 Identities=17% Similarity=0.151 Sum_probs=73.6
Q ss_pred CCeEEeeccCh---HHhhccCCcCcee--e-ccCchhHHHHHHhCCcEecccccccchhh-HHHHhhhhceeEEeecCCC
Q 011106 345 RGLLMKNWAPQ---LEVLSHRATCAFL--S-HCGWNSVLEALIHGVPIIGWPMAAEQFFN-AKFLEQEMGVCVEVARGKT 417 (493)
Q Consensus 345 ~nv~~~~~~pq---~~lL~~~~v~~~I--~-HgG~gs~~eal~~GvP~l~~P~~~DQ~~n-a~~v~~~lG~G~~~~~~~~ 417 (493)
++|++.+++++ ..+++.+++ || + .|+-.++.||+++|+|+|+.|-..=.... +..+. ..|+.-.+..
T Consensus 434 ~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~-~~g~~e~v~~--- 507 (568)
T 2vsy_A 434 QRLVFMPKLPHPQYLARYRHADL--FLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNH-HLGLDEMNVA--- 507 (568)
T ss_dssp GGEEEECCCCHHHHHHHGGGCSE--EECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHH-HHTCGGGBCS---
T ss_pred hHEEeeCCCCHHHHHHHHhcCCE--EeeCCCCCCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHH-HCCChhhhcC---
Confidence 68999999985 456888887 54 1 25667889999999999997742111112 23333 3265544431
Q ss_pred CccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHhhc
Q 011106 418 CEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAISMK 482 (493)
Q Consensus 418 ~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 482 (493)
+.+++.+++.++++|++.-+.+++++++... + ....+....++.+.+.+++..
T Consensus 508 ---~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~--~-------~~~f~~~~~~~~~~~~y~~~~ 560 (568)
T 2vsy_A 508 ---DDAAFVAKAVALASDPAALTALHARVDVLRR--A-------SGVFHMDGFADDFGALLQALA 560 (568)
T ss_dssp ---SHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH--H-------SSTTCHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHhcCHHHHHHHHHHHHHhhh--c-------CCCCCHHHHHHHHHHHHHHHH
Confidence 8999999999999988333333433333221 0 233445556666666555443
No 41
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=98.57 E-value=2.9e-05 Score=76.62 Aligned_cols=113 Identities=8% Similarity=0.058 Sum_probs=71.0
Q ss_pred eEEeeccCh---HHhhccCCcCceee----ccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhce-----------
Q 011106 347 LLMKNWAPQ---LEVLSHRATCAFLS----HCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGV----------- 408 (493)
Q Consensus 347 v~~~~~~pq---~~lL~~~~v~~~I~----HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~----------- 408 (493)
+.+.+|+++ .++++.+++ +|. -|.-.++.||+++|+|+|+... ......+. . |.
T Consensus 256 v~~~g~~~~~~~~~~~~~adv--~v~pS~~E~~~~~~lEAma~G~PvI~s~~----~g~~e~v~-~-~~~~~i~~~~~~~ 327 (413)
T 3oy2_A 256 MINRTVLTDERVDMMYNACDV--IVNCSSGEGFGLCSAEGAVLGKPLIISAV----GGADDYFS-G-DCVYKIKPSAWIS 327 (413)
T ss_dssp EEECSCCCHHHHHHHHHHCSE--EEECCSCCSSCHHHHHHHTTTCCEEEECC----HHHHHHSC-T-TTSEEECCCEEEE
T ss_pred eeccCcCCHHHHHHHHHhCCE--EEeCCCcCCCCcHHHHHHHcCCCEEEcCC----CChHHHHc-c-Ccccccccccccc
Confidence 677789985 446788887 542 2334489999999999998653 33444443 2 22
Q ss_pred -----eE--EeecCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHhh
Q 011106 409 -----CV--EVARGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAISM 481 (493)
Q Consensus 409 -----G~--~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 481 (493)
|+ .+.. -+.++++++| ++++|+ ..+++ +++..++.+ .+.-+....++.+++.+++.
T Consensus 328 ~~~~~G~~gl~~~-----~d~~~la~~i-~l~~~~----~~~~~---~~~~a~~~~----~~~fs~~~~~~~~~~~~~~~ 390 (413)
T 3oy2_A 328 VDDRDGIGGIEGI-----IDVDDLVEAF-TFFKDE----KNRKE---YGKRVQDFV----KTKPTWDDISSDIIDFFNSL 390 (413)
T ss_dssp CTTTCSSCCEEEE-----CCHHHHHHHH-HHTTSH----HHHHH---HHHHHHHHH----TTSCCHHHHHHHHHHHHHHH
T ss_pred cccccCcceeeCC-----CCHHHHHHHH-HHhcCH----HHHHH---HHHHHHHHH----HHhCCHHHHHHHHHHHHHHH
Confidence 54 5544 4899999999 999988 43322 222222222 34455666777777777666
Q ss_pred ccc
Q 011106 482 KNK 484 (493)
Q Consensus 482 ~~~ 484 (493)
...
T Consensus 391 ~~~ 393 (413)
T 3oy2_A 391 LRV 393 (413)
T ss_dssp TC-
T ss_pred Hhh
Confidence 543
No 42
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=98.50 E-value=3.4e-05 Score=77.95 Aligned_cols=111 Identities=9% Similarity=-0.043 Sum_probs=70.0
Q ss_pred CCCeE-EeeccChH---HhhccCCcCceee----ccCchhHHHHHHhCCcEecccccccchhhHHHHhhhh---------
Q 011106 344 KRGLL-MKNWAPQL---EVLSHRATCAFLS----HCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEM--------- 406 (493)
Q Consensus 344 ~~nv~-~~~~~pq~---~lL~~~~v~~~I~----HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~l--------- 406 (493)
+++|. +..+ ++. .+++.+++ +|. -|--.++.||+++|+|+|+... ......+. .-
T Consensus 345 ~~~v~~~~g~-~~~~~~~~~~~adv--~v~pS~~E~~~~~~lEAma~G~PvI~s~~----gg~~e~v~-~~~~~~~~~~~ 416 (485)
T 1rzu_A 345 HGRVGVAIGY-NEPLSHLMQAGCDA--IIIPSRFEPCGLTQLYALRYGCIPVVART----GGLADTVI-DANHAALASKA 416 (485)
T ss_dssp TTTEEEEESC-CHHHHHHHHHHCSE--EEECCSCCSSCSHHHHHHHHTCEEEEESS----HHHHHHCC-BCCHHHHHTTC
T ss_pred CCcEEEecCC-CHHHHHHHHhcCCE--EEECcccCCCCHHHHHHHHCCCCEEEeCC----CChhheec-ccccccccccC
Confidence 46786 5677 543 57888887 552 2334589999999999999754 33444444 31
Q ss_pred ceeEEeecCCCCccCHHHHHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHhh
Q 011106 407 GVCVEVARGKTCEVKHEDVVAKIELVM---NETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAISM 481 (493)
Q Consensus 407 G~G~~~~~~~~~~~~~~~l~~ai~~~l---~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 481 (493)
+.|..++. -+.++++++|.+++ +|+ ..++ ++++..+ .+.-|-...++++++..++.
T Consensus 417 ~~G~l~~~-----~d~~~la~~i~~ll~~~~~~----~~~~---~~~~~~~-------~~~fs~~~~~~~~~~~y~~~ 475 (485)
T 1rzu_A 417 ATGVQFSP-----VTLDGLKQAIRRTVRYYHDP----KLWT---QMQKLGM-------KSDVSWEKSAGLYAALYSQL 475 (485)
T ss_dssp CCBEEESS-----CSHHHHHHHHHHHHHHHTCH----HHHH---HHHHHHH-------TCCCBHHHHHHHHHHHHHHH
T ss_pred CcceEeCC-----CCHHHHHHHHHHHHHHhCCH----HHHH---HHHHHHH-------HHhCChHHHHHHHHHHHHHh
Confidence 26777754 57899999999999 666 3332 2233333 33454555666666655443
No 43
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=98.39 E-value=0.00018 Score=72.53 Aligned_cols=113 Identities=10% Similarity=-0.055 Sum_probs=70.9
Q ss_pred CCCeE-EeeccCh--HHhhccCCcCceee----ccCchhHHHHHHhCCcEecccccccchhhHHHHhhhh---------c
Q 011106 344 KRGLL-MKNWAPQ--LEVLSHRATCAFLS----HCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEM---------G 407 (493)
Q Consensus 344 ~~nv~-~~~~~pq--~~lL~~~~v~~~I~----HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~l---------G 407 (493)
+++|. +..+..+ ..+++.+++ +|. -|.-.++.||+++|+|+|+... ......+. .- +
T Consensus 346 ~~~v~~~~g~~~~~~~~~~~~adv--~v~pS~~E~~g~~~lEAma~G~PvI~s~~----gg~~e~v~-~~~~~~~~~~~~ 418 (485)
T 2qzs_A 346 PGQVGVQIGYHEAFSHRIMGGADV--ILVPSRFEPCGLTQLYGLKYGTLPLVRRT----GGLADTVS-DCSLENLADGVA 418 (485)
T ss_dssp TTTEEEEESCCHHHHHHHHHHCSE--EEECCSCCSSCSHHHHHHHHTCEEEEESS----HHHHHHCC-BCCHHHHHTTCC
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCcHHHHHHHHCCCCEEECCC----CCccceec-cCcccccccccc
Confidence 46775 6677333 357888887 552 2334578899999999999754 33444444 31 3
Q ss_pred eeEEeecCCCCccCHHHHHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHhhc
Q 011106 408 VCVEVARGKTCEVKHEDVVAKIELVM---NETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAISMK 482 (493)
Q Consensus 408 ~G~~~~~~~~~~~~~~~l~~ai~~~l---~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 482 (493)
.|..++. -+.++++++|.+++ +|+ ..++ ++++..+ .+.-|-...++.+++.+++..
T Consensus 419 ~G~l~~~-----~d~~~la~~i~~ll~~~~~~----~~~~---~~~~~~~-------~~~fs~~~~~~~~~~ly~~~~ 477 (485)
T 2qzs_A 419 SGFVFED-----SNAWSLLRAIRRAFVLWSRP----SLWR---FVQRQAM-------AMDFSWQVAAKSYRELYYRLK 477 (485)
T ss_dssp CBEEECS-----SSHHHHHHHHHHHHHHHTSH----HHHH---HHHHHHH-------HCCCCHHHHHHHHHHHHHHHC
T ss_pred ceEEECC-----CCHHHHHHHHHHHHHHcCCH----HHHH---HHHHHHH-------hhcCCHHHHHHHHHHHHHHhh
Confidence 6777765 58999999999999 566 3332 2222222 234545566666666665554
No 44
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=98.33 E-value=0.00011 Score=71.52 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=71.7
Q ss_pred CeEEeeccCh-HHhhccCCcCceee-----ccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCc
Q 011106 346 GLLMKNWAPQ-LEVLSHRATCAFLS-----HCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCE 419 (493)
Q Consensus 346 nv~~~~~~pq-~~lL~~~~v~~~I~-----HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~ 419 (493)
++.+.++..+ ..+++.+++ ++. -+|..++.||+++|+|+|+-|...+.......+.+. |.++.+
T Consensus 261 ~v~~~~~~~dl~~~y~~aDv--~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~~~~-G~l~~~------- 330 (374)
T 2xci_A 261 DVILVDRFGILKELYPVGKI--AIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKE-GAGFEV------- 330 (374)
T ss_dssp SEEECCSSSCHHHHGGGEEE--EEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHHHHT-TCEEEC-------
T ss_pred cEEEECCHHHHHHHHHhCCE--EEECCcccCCCCcCHHHHHHhCCCEEECCCccChHHHHHHHHHC-CCEEEe-------
Confidence 4666665554 668888886 443 123478999999999999877767766666655445 776554
Q ss_pred cCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Q 011106 420 VKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIK 454 (493)
Q Consensus 420 ~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~ 454 (493)
-+.++|+++|.++|+| +.-+.|.+++++..+.-.
T Consensus 331 ~d~~~La~ai~~ll~d-~~r~~mg~~ar~~~~~~~ 364 (374)
T 2xci_A 331 KNETELVTKLTELLSV-KKEIKVEEKSREIKGCYL 364 (374)
T ss_dssp CSHHHHHHHHHHHHHS-CCCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhcc
Confidence 2679999999999998 655578888888777655
No 45
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=98.33 E-value=3.9e-06 Score=72.42 Aligned_cols=130 Identities=10% Similarity=0.078 Sum_probs=84.5
Q ss_pred EEEEeccCCcCCCHHHHHHHHHHHHhC-CCcEEEEEcCCCCCCCCcchhcccCCchhHH--HHhccCCCCeEEeeccCh-
Q 011106 280 VLYISFGSMNTISASQMMQLAMALEAS-GKNFIWVVRPPIGFDINSEFRASEWLPEGFE--ERIRDSKRGLLMKNWAPQ- 355 (493)
Q Consensus 280 ~V~vs~GS~~~~~~~~~~~i~~al~~~-~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~nv~~~~~~pq- 355 (493)
.+++..|+... ...+..++++++.. +.+++++-.... . ..+..... ..-. +++|.+.+|+++
T Consensus 24 ~~i~~~G~~~~--~Kg~~~li~a~~~l~~~~l~i~G~~~~-------~---~~l~~~~~~~~~~l--~~~v~~~g~~~~~ 89 (177)
T 2f9f_A 24 DFWLSVNRIYP--EKRIELQLEVFKKLQDEKLYIVGWFSK-------G---DHAERYARKIMKIA--PDNVKFLGSVSEE 89 (177)
T ss_dssp SCEEEECCSSG--GGTHHHHHHHHHHCTTSCEEEEBCCCT-------T---STHHHHHHHHHHHS--CTTEEEEESCCHH
T ss_pred CEEEEEecccc--ccCHHHHHHHHHhCCCcEEEEEecCcc-------H---HHHHHHHHhhhccc--CCcEEEeCCCCHH
Confidence 34556677652 33455677777776 556555443221 0 01111111 1111 568999999998
Q ss_pred --HHhhccCCcCceee---ccCch-hHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHH
Q 011106 356 --LEVLSHRATCAFLS---HCGWN-SVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKI 429 (493)
Q Consensus 356 --~~lL~~~~v~~~I~---HgG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai 429 (493)
..+++.+++ +|. +.|+| ++.||+++|+|+|+... ..+...+... +.|..+ . -+.+++.++|
T Consensus 90 e~~~~~~~adi--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~e~i~~~-~~g~~~-~-----~d~~~l~~~i 156 (177)
T 2f9f_A 90 ELIDLYSRCKG--LLCTAKDEDFGLTPIEAMASGKPVIAVNE----GGFKETVINE-KTGYLV-N-----ADVNEIIDAM 156 (177)
T ss_dssp HHHHHHHHCSE--EEECCSSCCSCHHHHHHHHTTCCEEEESS----HHHHHHCCBT-TTEEEE-C-----SCHHHHHHHH
T ss_pred HHHHHHHhCCE--EEeCCCcCCCChHHHHHHHcCCcEEEeCC----CCHHHHhcCC-CccEEe-C-----CCHHHHHHHH
Confidence 568888887 554 34444 89999999999999753 4555666544 577777 5 4899999999
Q ss_pred HHHhcCC
Q 011106 430 ELVMNET 436 (493)
Q Consensus 430 ~~~l~~~ 436 (493)
.++++|+
T Consensus 157 ~~l~~~~ 163 (177)
T 2f9f_A 157 KKVSKNP 163 (177)
T ss_dssp HHHHHCT
T ss_pred HHHHhCH
Confidence 9999888
No 46
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=98.32 E-value=7.8e-05 Score=79.25 Aligned_cols=94 Identities=11% Similarity=0.069 Sum_probs=61.2
Q ss_pred CCCeEEeec----cChHHhhc----cCCcCceeec----cCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEE
Q 011106 344 KRGLLMKNW----APQLEVLS----HRATCAFLSH----CGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVE 411 (493)
Q Consensus 344 ~~nv~~~~~----~pq~~lL~----~~~v~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~ 411 (493)
.++|.+.++ +++.++.. .+++ ||.- |--.++.||+++|+|+|+. |-......+... +.|+.
T Consensus 639 ~~~V~flG~~~~~v~~~eL~~~~~~aaDv--fV~PS~~EgfglvllEAMA~G~PVIas----d~GG~~EiV~dg-~~Gll 711 (816)
T 3s28_A 639 NGQFRWISSQMDRVRNGELYRYICDTKGA--FVQPALYEAFGLTVVEAMTCGLPTFAT----CKGGPAEIIVHG-KSGFH 711 (816)
T ss_dssp BBBEEEECCCCCHHHHHHHHHHHHHTTCE--EEECCSCBSSCHHHHHHHHTTCCEEEE----SSBTHHHHCCBT-TTBEE
T ss_pred CCcEEEccCccccCCHHHHHHHHHhcCeE--EEECCCccCccHHHHHHHHcCCCEEEe----CCCChHHHHccC-CcEEE
Confidence 367888774 44455543 3455 5532 3345889999999999995 445556666544 57888
Q ss_pred eecCCCCccCHHHHHHHHHHHh----cCCchhHHHHHHHHHH
Q 011106 412 VARGKTCEVKHEDVVAKIELVM----NETDKGKEIRRKVSEV 449 (493)
Q Consensus 412 ~~~~~~~~~~~~~l~~ai~~~l----~~~~~~~~~~~~a~~l 449 (493)
++. -+.++++++|.+++ .|++..+.+.+++++.
T Consensus 712 v~p-----~D~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~ 748 (816)
T 3s28_A 712 IDP-----YHGDQAADTLADFFTKCKEDPSHWDEISKGGLQR 748 (816)
T ss_dssp ECT-----TSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred eCC-----CCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 875 58899999997766 7884333444444443
No 47
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=98.10 E-value=0.0003 Score=69.21 Aligned_cols=75 Identities=8% Similarity=0.013 Sum_probs=57.3
Q ss_pred CCCeEEeeccChH---HhhccCCcCceee---ccCc-hhHHHHH-------HhCCcEecccccccchhhHHHHhhhhcee
Q 011106 344 KRGLLMKNWAPQL---EVLSHRATCAFLS---HCGW-NSVLEAL-------IHGVPIIGWPMAAEQFFNAKFLEQEMGVC 409 (493)
Q Consensus 344 ~~nv~~~~~~pq~---~lL~~~~v~~~I~---HgG~-gs~~eal-------~~GvP~l~~P~~~DQ~~na~~v~~~lG~G 409 (493)
.++|.+.+++|+. ++++.+++ +|. +-|+ +++.||+ ++|+|+|+... +... ..|
T Consensus 264 ~~~V~f~G~~~~~~l~~~~~~adv--~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~----------v~~~-~~G 330 (406)
T 2hy7_A 264 GDNVIVYGEMKHAQTIGYIKHARF--GIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA----------VVGP-YKS 330 (406)
T ss_dssp CTTEEEECCCCHHHHHHHHHTCSE--EECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG----------GTCS-CSS
T ss_pred CCCEEEcCCCCHHHHHHHHHhcCE--EEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh----------cccC-cce
Confidence 5789999999874 46788887 442 3344 4678999 99999999765 4433 457
Q ss_pred EE-eecCCCCccCHHHHHHHHHHHhcCC
Q 011106 410 VE-VARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 410 ~~-~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
.. ++. -+.++++++|.++++|+
T Consensus 331 ~l~v~~-----~d~~~la~ai~~ll~~~ 353 (406)
T 2hy7_A 331 RFGYTP-----GNADSVIAAITQALEAP 353 (406)
T ss_dssp EEEECT-----TCHHHHHHHHHHHHHCC
T ss_pred EEEeCC-----CCHHHHHHHHHHHHhCc
Confidence 76 654 58999999999999988
No 48
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=97.84 E-value=0.00025 Score=60.02 Aligned_cols=146 Identities=12% Similarity=0.099 Sum_probs=84.4
Q ss_pred cEEEEeccCCcCCCHHHHHHHHHHHHhCC--CcEE-EEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccCh
Q 011106 279 SVLYISFGSMNTISASQMMQLAMALEASG--KNFI-WVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQ 355 (493)
Q Consensus 279 ~~V~vs~GS~~~~~~~~~~~i~~al~~~~--~~vi-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq 355 (493)
+++++..|++.. ...+..+++++.... .++- +.+|... ..+.+.....+-+.++.+ .|+|+
T Consensus 2 ~~~i~~~G~~~~--~Kg~~~li~a~~~l~~~~~~~l~i~G~g~-------------~~~~~~~~~~~~~~~v~~-g~~~~ 65 (166)
T 3qhp_A 2 PFKIAMVGRYSN--EKNQSVLIKAVALSKYKQDIVLLLKGKGP-------------DEKKIKLLAQKLGVKAEF-GFVNS 65 (166)
T ss_dssp CEEEEEESCCST--TTTHHHHHHHHHTCTTGGGEEEEEECCST-------------THHHHHHHHHHHTCEEEC-CCCCH
T ss_pred ceEEEEEeccch--hcCHHHHHHHHHHhccCCCeEEEEEeCCc-------------cHHHHHHHHHHcCCeEEE-eecCH
Confidence 467777888753 233455666666642 2333 3333221 112222211111347888 99987
Q ss_pred H---HhhccCCcCceee----ccCchhHHHHHHhCC-cEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHH
Q 011106 356 L---EVLSHRATCAFLS----HCGWNSVLEALIHGV-PIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVA 427 (493)
Q Consensus 356 ~---~lL~~~~v~~~I~----HgG~gs~~eal~~Gv-P~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ 427 (493)
. .+++.+++ +|. -|.-.++.||+++|+ |+|+... .......+... +. .+. .-+.+++.+
T Consensus 66 ~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~vPvi~~~~---~~~~~~~~~~~-~~--~~~-----~~~~~~l~~ 132 (166)
T 3qhp_A 66 NELLEILKTCTL--YVHAANVESEAIACLEAISVGIVPVIANSP---LSATRQFALDE-RS--LFE-----PNNAKDLSA 132 (166)
T ss_dssp HHHHHHHTTCSE--EEECCCSCCCCHHHHHHHHTTCCEEEECCT---TCGGGGGCSSG-GG--EEC-----TTCHHHHHH
T ss_pred HHHHHHHHhCCE--EEECCcccCccHHHHHHHhcCCCcEEeeCC---CCchhhhccCC-ce--EEc-----CCCHHHHHH
Confidence 4 46788887 554 233458999999996 9999332 11222222212 22 333 258999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHH
Q 011106 428 KIELVMNETDKGKEIRRKVSEVREMI 453 (493)
Q Consensus 428 ai~~~l~~~~~~~~~~~~a~~l~~~~ 453 (493)
+|.++++|++..+.+.+++++..+.+
T Consensus 133 ~i~~l~~~~~~~~~~~~~~~~~~~~~ 158 (166)
T 3qhp_A 133 KIDWWLENKLERERMQNEYAKSALNY 158 (166)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHC
Confidence 99999998855555666666655444
No 49
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=97.65 E-value=0.0011 Score=57.87 Aligned_cols=92 Identities=10% Similarity=0.013 Sum_probs=65.5
Q ss_pred CeEE-eeccCh---HHhhccCCcCceeecc---C-chhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCC
Q 011106 346 GLLM-KNWAPQ---LEVLSHRATCAFLSHC---G-WNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKT 417 (493)
Q Consensus 346 nv~~-~~~~pq---~~lL~~~~v~~~I~Hg---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~ 417 (493)
+|++ .+++++ ..+++.+++ +|.-. | -.++.||+++|+|+|+... ......+ .. +.|..++.
T Consensus 96 ~v~~~~g~~~~~~~~~~~~~ad~--~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~----~~~~e~~-~~-~~g~~~~~--- 164 (200)
T 2bfw_A 96 NVKVITEMLSREFVRELYGSVDF--VIIPSYFEPFGLVALEAMCLGAIPIASAV----GGLRDII-TN-ETGILVKA--- 164 (200)
T ss_dssp TEEEECSCCCHHHHHHHHTTCSE--EEECCSCCSSCHHHHHHHHTTCEEEEESC----HHHHHHC-CT-TTCEEECT---
T ss_pred CEEEEeccCCHHHHHHHHHHCCE--EEECCCCCCccHHHHHHHHCCCCEEEeCC----CChHHHc-CC-CceEEecC---
Confidence 8988 999985 457888887 55322 3 4578999999999998754 3445555 34 67777765
Q ss_pred CccCHHHHHHHHHHHhc-CCchhHHHHHHHHHHH
Q 011106 418 CEVKHEDVVAKIELVMN-ETDKGKEIRRKVSEVR 450 (493)
Q Consensus 418 ~~~~~~~l~~ai~~~l~-~~~~~~~~~~~a~~l~ 450 (493)
-+.+++.++|.++++ |++..+.+.+++++..
T Consensus 165 --~~~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~ 196 (200)
T 2bfw_A 165 --GDPGELANAILKALELSRSDLSKFRENCKKRA 196 (200)
T ss_dssp --TCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 489999999999999 8844444555555443
No 50
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=97.52 E-value=0.071 Score=54.17 Aligned_cols=84 Identities=7% Similarity=-0.085 Sum_probs=52.1
Q ss_pred CCCeEEeeccChH---HhhccCCcCceeec---cCch-hHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCC
Q 011106 344 KRGLLMKNWAPQL---EVLSHRATCAFLSH---CGWN-SVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGK 416 (493)
Q Consensus 344 ~~nv~~~~~~pq~---~lL~~~~v~~~I~H---gG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 416 (493)
+.++.+....++. .+++.+++ ||.- =|+| +++||+++|+|+|+-.. ......|... .-|.......
T Consensus 381 ~~~v~~~~~~~~~~~~~~~~~aD~--~v~PS~~E~fgl~~lEAma~G~PvI~s~~----gG~~e~V~dg-~~G~~~~~~~ 453 (536)
T 3vue_A 381 PGKVRAVVKFNAPLAHLIMAGADV--LAVPSRFEPCGLIQLQGMRYGTPCACAST----GGLVDTVIEG-KTGFHMGRLS 453 (536)
T ss_dssp TTTEEEECSCCHHHHHHHHHHCSE--EEECCSCCSSCSHHHHHHHTTCCEEECSC----THHHHHCCBT-TTEEECCCCC
T ss_pred CCceEEEEeccHHHHHHHHHhhhe--eecccccCCCCHHHHHHHHcCCCEEEcCC----CCchheeeCC-CCccccccCC
Confidence 5678877777763 46777886 5532 2444 88999999999998654 3334444322 2343222100
Q ss_pred -----CCccCHHHHHHHHHHHhc
Q 011106 417 -----TCEVKHEDVVAKIELVMN 434 (493)
Q Consensus 417 -----~~~~~~~~l~~ai~~~l~ 434 (493)
-...+.+.|+++|+++|.
T Consensus 454 ~~g~l~~~~d~~~la~ai~ral~ 476 (536)
T 3vue_A 454 VDCKVVEPSDVKKVAATLKRAIK 476 (536)
T ss_dssp SCTTCCCHHHHHHHHHHHHHHHH
T ss_pred CceeEECCCCHHHHHHHHHHHHH
Confidence 012467899999998885
No 51
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.50 E-value=0.0027 Score=67.04 Aligned_cols=185 Identities=16% Similarity=0.209 Sum_probs=108.9
Q ss_pred CCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChH
Q 011106 277 ENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQL 356 (493)
Q Consensus 277 ~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~ 356 (493)
++.+||.||.+.....++.+..-.+-|++.+.-++|...... ... ..+-..+. +.+-.++.+.+.+..|..
T Consensus 521 ~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~-------~~~-~~l~~~~~-~~gi~~~r~~f~~~~~~~ 591 (723)
T 4gyw_A 521 EDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPA-------VGE-PNIQQYAQ-NMGLPQNRIIFSPVAPKE 591 (723)
T ss_dssp TTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTG-------GGH-HHHHHHHH-HTTCCGGGEEEEECCCHH
T ss_pred CCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcH-------HHH-HHHHHHHH-hcCCCcCeEEECCCCCHH
Confidence 356999999999999999999999999999998998886542 000 00111111 111114668888888875
Q ss_pred Hhh---ccCCcCcee---eccCchhHHHHHHhCCcEecccccccchh--hHHHHhhhhceeEEeecCCCCccCHHHHHHH
Q 011106 357 EVL---SHRATCAFL---SHCGWNSVLEALIHGVPIIGWPMAAEQFF--NAKFLEQEMGVCVEVARGKTCEVKHEDVVAK 428 (493)
Q Consensus 357 ~lL---~~~~v~~~I---~HgG~gs~~eal~~GvP~l~~P~~~DQ~~--na~~v~~~lG~G~~~~~~~~~~~~~~~l~~a 428 (493)
+-| ..++| ++ ..+|.+|++|||..|||+|++| ++++. .+.-+-..+|+.-.+.. -..+-+..|
T Consensus 592 ~~l~~~~~~Di--~LDt~p~~g~tT~~eal~~GvPvvt~~--g~~~~sR~~~s~l~~~gl~e~ia~-----~~~~Y~~~a 662 (723)
T 4gyw_A 592 EHVRRGQLADV--CLDTPLCNGHTTGMDVLWAGTPMVTMP--GETLASRVAASQLTCLGCLELIAK-----NRQEYEDIA 662 (723)
T ss_dssp HHHHHGGGCSE--EECCSSSCCSHHHHHHHHTTCCEEBCC--CSSGGGTHHHHHHHHHTCGGGBCS-----SHHHHHHHH
T ss_pred HHHHHhCCCeE--EeCCCCcCCHHHHHHHHHcCCCEEEcc--CCCccHhHHHHHHHHcCCcccccC-----CHHHHHHHH
Confidence 544 44554 54 4789999999999999999998 33332 33333334466654443 223444444
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHhhc-ccccccc
Q 011106 429 IELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAISMK-NKINGRV 489 (493)
Q Consensus 429 i~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~ 489 (493)
| ++-+|.+....+| +++++.+..+. -.. ..+.++.+.+.++++- .-+.|..
T Consensus 663 ~-~la~d~~~l~~lr---~~l~~~~~~s~-----l~d-~~~~~~~le~a~~~~w~r~~~G~~ 714 (723)
T 4gyw_A 663 V-KLGTDLEYLKKVR---GKVWKQRISSP-----LFN-TKQYTMELERLYLQMWEHYAAGNK 714 (723)
T ss_dssp H-HHHHCHHHHHHHH---HHHHHHHHHSS-----TTC-HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred H-HHhcCHHHHHHHH---HHHHHHHHhCc-----CcC-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4 4555552222222 23333333211 112 4556677776666654 3345544
No 52
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.47 E-value=0.011 Score=56.55 Aligned_cols=109 Identities=14% Similarity=0.011 Sum_probs=73.5
Q ss_pred CCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCce-EEeccCCCCCCCCCCCCCC
Q 011106 2 AQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSID-LHEIPFNSSSHGLPPNSEN 80 (493)
Q Consensus 2 ~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~-~~~i~~~~~~~~l~~~~~~ 80 (493)
....+||+++-..+.|++.-+..+.+.|+++..+.+|++++.+.+.+.++.. +.++ ++.++.. .
T Consensus 5 ~l~~~~iLvi~~~~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~~~~l~~~~----p~vd~vi~~~~~--------~--- 69 (349)
T 3tov_A 5 ELDYKRIVVTFLMHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQVMEYN----PNIDELIVVDKK--------G--- 69 (349)
T ss_dssp CCTTCEEEEECCCCHHHHHTTHHHHHHHHHHCTTSEEEEEEEGGGGGGTSSC----TTCSEEEEECCS--------S---
T ss_pred CCCCCEEEEEecCcccHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcC----CCccEEEEeCcc--------c---
Confidence 3356899999999999999999999999985459999999999888887764 3333 4434310 0
Q ss_pred CCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCC-cEEEECCcchhhHHHHHHcCCceEE
Q 011106 81 CDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPP-LCIIADIFFGWTCGVAKELNVFHAI 142 (493)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~p-DlvI~D~~~~~~~~~A~~lgiP~i~ 142 (493)
.. ..+.. ...+...+++.+ + |++|.=....-...++...|+|..+
T Consensus 70 ----~~---~~~~~-----~~~l~~~Lr~~~-----y~D~vidl~~~~rs~~l~~~~~a~~ri 115 (349)
T 3tov_A 70 ----RH---NSISG-----LNEVAREINAKG-----KTDIVINLHPNERTSYLAWKIHAPITT 115 (349)
T ss_dssp ----HH---HHHHH-----HHHHHHHHHHHC-----CCCEEEECCCSHHHHHHHHHHCCSEEE
T ss_pred ----cc---ccHHH-----HHHHHHHHhhCC-----CCeEEEECCCChHHHHHHHHhCCCeEE
Confidence 00 11111 012233344445 9 9999765555566788888998654
No 53
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=97.42 E-value=0.0021 Score=65.38 Aligned_cols=140 Identities=9% Similarity=0.021 Sum_probs=88.5
Q ss_pred CcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEE--EcCCCCCCCCcchhcccCCchhHHH-HhccCCCCeEEeeccC
Q 011106 278 NSVLYISFGSMNTISASQMMQLAMALEASGKNFIWV--VRPPIGFDINSEFRASEWLPEGFEE-RIRDSKRGLLMKNWAP 354 (493)
Q Consensus 278 ~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~--~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~nv~~~~~~p 354 (493)
..++|.||++..+..++.+....+.+++.+..++|. .+... .... . +-..+.. .. .+.+.+.+.+|
T Consensus 440 G~v~Fg~fn~~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~------g~~~-~-~~~~~~~~GI---~~Rv~F~g~~p 508 (631)
T 3q3e_A 440 EVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFALGQSN------GITH-P-YVERFIKSYL---GDSATAHPHSP 508 (631)
T ss_dssp SEEEEEEEECSTTCCHHHHHHHHHHHHHCSSEEEEEEEESSCC------GGGH-H-HHHHHHHHHH---GGGEEEECCCC
T ss_pred CeEEEEECCccccCCHHHHHHHHHHHHhCCCcEEEEEecCCCc------hhhH-H-HHHHHHHcCC---CccEEEcCCCC
Confidence 359999999999999999999989998888777764 33221 1100 0 1111111 11 34677888888
Q ss_pred hHHh---hccCCcCcee---eccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEE-eecCCCCccCHHHHHH
Q 011106 355 QLEV---LSHRATCAFL---SHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVE-VARGKTCEVKHEDVVA 427 (493)
Q Consensus 355 q~~l---L~~~~v~~~I---~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~-~~~~~~~~~~~~~l~~ 427 (493)
+.+. +..+++ |+ ..+|..|++|||++|||+|+.+-..=.-..+.-+-..+|+.-. +. -+.++..+
T Consensus 509 ~~e~la~y~~aDI--fLDpfpy~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA------~d~eeYv~ 580 (631)
T 3q3e_A 509 YHQYLRILHNCDM--MVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIA------NTVDEYVE 580 (631)
T ss_dssp HHHHHHHHHTCSE--EECCSSSCCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEE------SSHHHHHH
T ss_pred HHHHHHHHhcCcE--EEeCCcccCChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceec------CCHHHHHH
Confidence 7654 466776 33 3478899999999999999987421111122222223365432 33 26777777
Q ss_pred HHHHHhcCC
Q 011106 428 KIELVMNET 436 (493)
Q Consensus 428 ai~~~l~~~ 436 (493)
...++.+|+
T Consensus 581 ~Av~La~D~ 589 (631)
T 3q3e_A 581 RAVRLAENH 589 (631)
T ss_dssp HHHHHHHCH
T ss_pred HHHHHhCCH
Confidence 777888888
No 54
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.08 E-value=0.013 Score=56.05 Aligned_cols=105 Identities=10% Similarity=-0.041 Sum_probs=66.3
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCc-eEEeccCCCCCCCCCCCCCCCCCC
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSI-DLHEIPFNSSSHGLPPNSENCDVL 84 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i-~~~~i~~~~~~~~l~~~~~~~~~~ 84 (493)
|||+++...+.|++.-...+.+.|++...+.+|++++.+.+.+.++.. +.+ +++.++.. ..
T Consensus 1 mkILii~~~~~GD~i~~~p~l~~Lk~~~P~~~i~~l~~~~~~~l~~~~----p~i~~v~~~~~~-------~~------- 62 (348)
T 1psw_A 1 MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSRM----PEVNEAIPMPLG-------HG------- 62 (348)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHSTTCEEEEEECGGGHHHHTTC----TTEEEEEEC-------------------
T ss_pred CeEEEEeccccCHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcC----CccCEEEEecCC-------cc-------
Confidence 589999999999999999999999984459999999998887776553 233 33333210 00
Q ss_pred ChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEE
Q 011106 85 PYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAI 142 (493)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~ 142 (493)
. . ....+.++++.++ ..+||++|.-.-..-...++...|+|...
T Consensus 63 ~----~--------~~~~~~~l~~~l~--~~~~D~vid~~~~~~sa~~~~~~~~~~~i 106 (348)
T 1psw_A 63 A----L--------EIGERRKLGHSLR--EKRYDRAYVLPNSFKSALVPLFAGIPHRT 106 (348)
T ss_dssp --------------CHHHHHHHHHHTT--TTTCSEEEECSCCSGGGHHHHHTTCSEEE
T ss_pred c----c--------chHHHHHHHHHHH--hcCCCEEEECCCChHHHHHHHHhCCCEEe
Confidence 0 0 0012223333333 22499998333334556788888999744
No 55
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=96.92 E-value=0.0018 Score=61.72 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=70.9
Q ss_pred CeEEeeccChHHhh---ccCCcCceeeccCch---------hHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEee
Q 011106 346 GLLMKNWAPQLEVL---SHRATCAFLSHCGWN---------SVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVA 413 (493)
Q Consensus 346 nv~~~~~~pq~~lL---~~~~v~~~I~HgG~g---------s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~ 413 (493)
||...+|+|+.++. +.++.+++.+-+.+| -+.|++++|+|+|+.+ ...++..+++. |+|+.++
T Consensus 215 nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~----~~~~~~~v~~~-~~G~~~~ 289 (339)
T 3rhz_A 215 NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQE----GIANQELIENN-GLGWIVK 289 (339)
T ss_dssp TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEET----TCTTTHHHHHH-TCEEEES
T ss_pred CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEcc----ChhHHHHHHhC-CeEEEeC
Confidence 99999999997754 444554444333333 4789999999999754 56788888878 9999875
Q ss_pred cCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Q 011106 414 RGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIK 454 (493)
Q Consensus 414 ~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~ 454 (493)
+.+++.+++..+.. +..+.|++++++.++.++
T Consensus 290 -------~~~e~~~~i~~l~~--~~~~~m~~na~~~a~~~~ 321 (339)
T 3rhz_A 290 -------DVEEAIMKVKNVNE--DEYIELVKNVRSFNPILR 321 (339)
T ss_dssp -------SHHHHHHHHHHCCH--HHHHHHHHHHHHHTHHHH
T ss_pred -------CHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHhh
Confidence 36788888887643 245689999999999886
No 56
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=96.11 E-value=0.91 Score=42.49 Aligned_cols=48 Identities=8% Similarity=0.031 Sum_probs=42.1
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhcc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSS 53 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~ 53 (493)
+||+++-..+.|++.-...+.+.|++...+.+|++++.+.+.+.++..
T Consensus 1 ~~ILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~ 48 (326)
T 2gt1_A 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWH 48 (326)
T ss_dssp CEEEEECCCCHHHHHHHHHHHHHHHHHSTTCEEEEEEEGGGTHHHHTS
T ss_pred CeEEEEeccccchHHhHHHHHHHHHHhCCCCEEEEEEehhhhHHHhcC
Confidence 589999999999999999999999985459999999999888877653
No 57
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=94.63 E-value=0.12 Score=50.67 Aligned_cols=85 Identities=13% Similarity=0.026 Sum_probs=57.5
Q ss_pred CCCeEEeeccChH---HhhccCCcCceee--c-cCch-hHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCC
Q 011106 344 KRGLLMKNWAPQL---EVLSHRATCAFLS--H-CGWN-SVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGK 416 (493)
Q Consensus 344 ~~nv~~~~~~pq~---~lL~~~~v~~~I~--H-gG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 416 (493)
..+|.+.+++++. ++++.+++ ||. . =|.| ++.||+++|+|+|+ -..+ ....++.. ..|+.+++
T Consensus 294 ~~~v~f~G~~~~~~l~~~~~~adv--~v~pS~~E~~g~~~lEAmA~G~PVV~-~~~g----~~e~v~~~-~~G~lv~~-- 363 (413)
T 2x0d_A 294 GIHLNSLGKLTLEDYADLLKRSSI--GISLMISPHPSYPPLEMAHFGLRVIT-NKYE----NKDLSNWH-SNIVSLEQ-- 363 (413)
T ss_dssp TEEEEEEESCCHHHHHHHHHHCCE--EECCCSSSSCCSHHHHHHHTTCEEEE-ECBT----TBCGGGTB-TTEEEESS--
T ss_pred cCcEEEcCCCCHHHHHHHHHhCCE--EEEecCCCCCCcHHHHHHhCCCcEEE-eCCC----cchhhhcC-CCEEEeCC--
Confidence 4578888999875 46777887 553 2 1443 67999999999998 3221 22344422 36777765
Q ss_pred CCccCHHHHHHHHHHHhcCCchhHHHHHH
Q 011106 417 TCEVKHEDVVAKIELVMNETDKGKEIRRK 445 (493)
Q Consensus 417 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~ 445 (493)
-++++++++|.++++|+ ..+++
T Consensus 364 ---~d~~~la~ai~~ll~~~----~~~~~ 385 (413)
T 2x0d_A 364 ---LNPENIAETLVELCMSF----NNRDV 385 (413)
T ss_dssp ---CSHHHHHHHHHHHHHHT----C----
T ss_pred ---CCHHHHHHHHHHHHcCH----HHHHH
Confidence 58999999999999988 55544
No 58
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=88.79 E-value=1.4 Score=39.49 Aligned_cols=112 Identities=15% Similarity=0.202 Sum_probs=58.1
Q ss_pred cEEEEECCCCcccHHH-HHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCC
Q 011106 6 ENIVMFPFMAQGHIIP-FLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVL 84 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p-~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~ 84 (493)
+|||+.- --|--.| +..|+++|.+ .|| |+++.+...+.-.-....-...+++...... ........
T Consensus 2 p~ILlTN--DDGi~apGi~~L~~~l~~--~g~-V~VvAP~~~~Sg~g~siT~~~pl~~~~~~~~--------~~~~v~GT 68 (251)
T 2wqk_A 2 PTFLLVN--DDGYFSPGINALREALKS--LGR-VVVVAPDRNLSGVGHSLTFTEPLKMRKIDTD--------FYTVIDGT 68 (251)
T ss_dssp CEEEEEC--SSCTTCHHHHHHHHHHTT--TSE-EEEEEESSCCTTSCCSCCCSSCEEEEEEETT--------EEEETTCC
T ss_pred CEEEEEc--CCCCCcHHHHHHHHHHHh--CCC-EEEEeeCCCCcccccCcCCCCCceeEEeecc--------ceeecCCC
Confidence 5666664 2233334 6688999999 885 8888866544333222110133444433311 00111222
Q ss_pred ChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEEC----------Ccc---hhhHHHHHHcCCceEEEec
Q 011106 85 PYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIAD----------IFF---GWTCGVAKELNVFHAIFSG 145 (493)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D----------~~~---~~~~~~A~~lgiP~i~~~~ 145 (493)
|.... .+ .+..++.+. +||+||+- .+. ..+++-|..+|||.|.+|.
T Consensus 69 PaDCV-----~l-----al~~~l~~~-----~PDLVvSGIN~G~N~g~dv~ySGTVgAA~Ea~~~GipaIA~S~ 127 (251)
T 2wqk_A 69 PADCV-----HL-----GYRVILEEK-----KPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSA 127 (251)
T ss_dssp HHHHH-----HH-----HHHTTTTTC-----CCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred hHHHH-----hh-----hhhhhcCCC-----CCCEEEeCccCCCccccceecchHHHHHHHHHhcCCCeEEEEc
Confidence 32111 11 122222222 49999983 333 3566777889999999974
No 59
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=84.91 E-value=5.5 Score=35.43 Aligned_cols=114 Identities=13% Similarity=0.129 Sum_probs=60.8
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCC
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLP 85 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~ 85 (493)
||||+.-==+. |.--+..|++.|.+ .| +|+++.+...+.-.-....-...+++..+.. +.. ......|
T Consensus 2 M~ILlTNDDGi-~apGi~aL~~~l~~--~g-~V~VVAP~~~~Sg~g~sit~~~pl~~~~~~~-----~~~---~~v~GTP 69 (251)
T 2phj_A 2 PTFLLVNDDGY-FSPGINALREALKS--LG-RVVVVAPDRNLSGVGHSLTFTEPLKMRKIDT-----DFY---TVIDGTP 69 (251)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTT--TS-EEEEEEESSCCTTSCCSCCCSSCEEEEEEET-----TEE---EETTCCH
T ss_pred CEEEEECCCCC-CCHHHHHHHHHHHh--cC-CEEEEecCCCccCCccceecCCCeEEEEecC-----CCe---EEECCCH
Confidence 57776652222 33447789999999 88 9999997765444433221113344444431 100 1112223
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEEC----------Ccc---hhhHHHHHHcCCceEEEech
Q 011106 86 YNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIAD----------IFF---GWTCGVAKELNVFHAIFSGS 146 (493)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D----------~~~---~~~~~~A~~lgiP~i~~~~~ 146 (493)
..... . .+..++. ..+||+||+- .+. ..+++-|..+|||.|.+|..
T Consensus 70 aDCV~---l-------al~~l~~-----~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~ 128 (251)
T 2phj_A 70 ADCVH---L-------GYRVILE-----EKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSAF 128 (251)
T ss_dssp HHHHH---H-------HHHTTTT-----TCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHH---H-------HHHHhcC-----CCCCCEEEECCcCCCcCCCCCccchHHHHHHHHHHcCCCeEEEEcC
Confidence 21110 1 1122221 1349999974 222 25556678899999999753
No 60
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=83.67 E-value=9.7 Score=37.72 Aligned_cols=109 Identities=15% Similarity=0.097 Sum_probs=68.5
Q ss_pred eE-EeeccChHH---hhccCCcCceee---ccCch-hHHHHHHhCC-----cEecccccccchhhHHHHhhhhceeEEee
Q 011106 347 LL-MKNWAPQLE---VLSHRATCAFLS---HCGWN-SVLEALIHGV-----PIIGWPMAAEQFFNAKFLEQEMGVCVEVA 413 (493)
Q Consensus 347 v~-~~~~~pq~~---lL~~~~v~~~I~---HgG~g-s~~eal~~Gv-----P~l~~P~~~DQ~~na~~v~~~lG~G~~~~ 413 (493)
++ +..++++.+ +++.+++ ||. .=|+| ++.||+++|+ |+|+--..+ .+..+ .-|+.++
T Consensus 333 v~~~~g~v~~~el~~ly~~ADv--~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G----~~~~l----~~g~lv~ 402 (482)
T 1uqt_A 333 LYYLNQHFDRKLLMKIFRYSDV--GLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAG----AANEL----TSALIVN 402 (482)
T ss_dssp EEEECSCCCHHHHHHHHHHCSE--EEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBG----GGGTC----TTSEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHccE--EEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCC----CHHHh----CCeEEEC
Confidence 44 457788754 6777887 443 34665 7889999998 666654322 11112 2355665
Q ss_pred cCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHhh
Q 011106 414 RGKTCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAISM 481 (493)
Q Consensus 414 ~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 481 (493)
+ -+.++++++|.++|++++. .-+++.++.++.++ . -+....++.+++.+++.
T Consensus 403 p-----~d~~~lA~ai~~lL~~~~~--~r~~~~~~~~~~v~-------~--~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 403 P-----YDRDEVAAALDRALTMSLA--ERISRHAEMLDVIV-------K--NDINHWQECFISDLKQI 454 (482)
T ss_dssp T-----TCHHHHHHHHHHHHTCCHH--HHHHHHHHHHHHHH-------H--TCHHHHHHHHHHHHHHS
T ss_pred C-----CCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHH-------h--CCHHHHHHHHHHHHHhc
Confidence 5 5899999999999986511 23344444444443 1 23667888888888776
No 61
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=81.20 E-value=11 Score=37.40 Aligned_cols=112 Identities=12% Similarity=0.056 Sum_probs=71.2
Q ss_pred CeEEeeccChH---HhhccCCcCceee--ccCchh-HHHHHHhC---CcEecccccccchhhHHHHhhhhceeEEeecCC
Q 011106 346 GLLMKNWAPQL---EVLSHRATCAFLS--HCGWNS-VLEALIHG---VPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGK 416 (493)
Q Consensus 346 nv~~~~~~pq~---~lL~~~~v~~~I~--HgG~gs-~~eal~~G---vP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~ 416 (493)
.|++...+|+. .++..+++ ++++ .=|+|. ..|++++| .|+|+--+.+ .+..+. .-|+.+++
T Consensus 353 ~V~f~g~v~~~el~aly~~ADv-~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aG----a~~~l~---~~allVnP-- 422 (496)
T 3t5t_A 353 TVRIDNDNDVNHTIACFRRADL-LIFNSTVDGQNLSTFEAPLVNERDADVILSETCG----AAEVLG---EYCRSVNP-- 422 (496)
T ss_dssp SEEEEECCCHHHHHHHHHHCSE-EEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBT----THHHHG---GGSEEECT--
T ss_pred CEEEeCCCCHHHHHHHHHhccE-EEECcccccCChhHHHHHHhCCCCCCEEEeCCCC----CHHHhC---CCEEEECC--
Confidence 57777778874 46667887 3333 458885 57999996 5665543332 222221 24777776
Q ss_pred CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHhh
Q 011106 417 TCEVKHEDVVAKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAISM 481 (493)
Q Consensus 417 ~~~~~~~~l~~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 481 (493)
-+.++++++|.++|++++. +-+++.+++.+.++ ... ...-++.+++.|+..
T Consensus 423 ---~D~~~lA~AI~~aL~m~~~--er~~r~~~~~~~V~--------~~d-~~~W~~~fl~~L~~~ 473 (496)
T 3t5t_A 423 ---FDLVEQAEAISAALAAGPR--QRAEAAARRRDAAR--------PWT-LEAWVQAQLDGLAAD 473 (496)
T ss_dssp ---TBHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHT--------TCB-HHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHH--------HCC-HHHHHHHHHHHHhhc
Confidence 6899999999999998711 33444555555543 222 566778888877654
No 62
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=80.78 E-value=2.2 Score=36.99 Aligned_cols=48 Identities=19% Similarity=0.130 Sum_probs=41.0
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
|+ .++||++--.|+.|-+. ...|.+.|++ +|++|.++.++.....+..
T Consensus 1 m~-~~k~IllgvTGaiaa~k-~~~ll~~L~~--~g~eV~vv~T~~A~~fi~~ 48 (209)
T 3zqu_A 1 MS-GPERITLAMTGASGAQY-GLRLLDCLVQ--EEREVHFLISKAAQLVMAT 48 (209)
T ss_dssp CC-SCSEEEEEECSSSCHHH-HHHHHHHHHH--TTCEEEEEECHHHHHHHHH
T ss_pred CC-CCCEEEEEEECHHHHHH-HHHHHHHHHH--CCCEEEEEECccHHHHHHH
Confidence 56 45789988888888777 8999999999 9999999999888777765
No 63
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=76.92 E-value=19 Score=31.79 Aligned_cols=101 Identities=15% Similarity=0.100 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHhhhhH
Q 011106 22 FLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLPYNLVIHLLRASTSLKP 101 (493)
Q Consensus 22 ~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (493)
+..|++.|.+ .| +|+++.+...+.-.-....-...+++..++.....++. .. ......|.... .+
T Consensus 16 i~aL~~~l~~--~g-~V~VVAP~~~~Sg~g~siTl~~pl~~~~~~~~~~~~~~-~~-~~v~GTPaDCV-----~l----- 80 (244)
T 2e6c_A 16 LWALAEAASQ--FG-EVFVAAPDTEQSAAGHAITIAHPVRAYPHPSPLHAPHF-PA-YRVRGTPADCV-----AL----- 80 (244)
T ss_dssp HHHHHHHHTT--TS-EEEEEEECSSCCCCCSSCCCSSCBEEEECCCCTTSCCC-CE-EEEESCHHHHH-----HH-----
T ss_pred HHHHHHHHHh--CC-CEEEEecCCCCcCCcccccCCCCeEEEEeccCcCCCCC-ce-EEEcCcHHHHH-----HH-----
Confidence 7789999998 88 89999977554443332211144555555421000010 11 11222332111 11
Q ss_pred HHHHHHHHhhcCCCCCcEEEEC----------Ccc---hhhHHHHHHcCCceEEEec
Q 011106 102 AFKEVISSLINQGRPPLCIIAD----------IFF---GWTCGVAKELNVFHAIFSG 145 (493)
Q Consensus 102 ~l~~~l~~~~~~~~~pDlvI~D----------~~~---~~~~~~A~~lgiP~i~~~~ 145 (493)
.+. +. .+||+||+- .+. ..+++-|..+|||.|.+|.
T Consensus 81 al~-----l~---~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 129 (244)
T 2e6c_A 81 GLH-----LF---GPVDLVLSGVNLGSNLGHEIWHSGTVAAAKQGYLFGLSAAAFSV 129 (244)
T ss_dssp HHH-----HS---CSCCEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHc-----CC---CCCCEEEECCccCCCCCcCeechHhHHHHHHHHhcCCCeEEEec
Confidence 111 21 349999964 222 3555667889999999975
No 64
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=76.31 E-value=19 Score=30.68 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=33.0
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
-.|++++..+.|=..-.+.+|.+... +|++|.|+..-
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g--~G~rV~~vQF~ 65 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG--HGKNVGVVQFI 65 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEEee
Confidence 47889998999999999999999999 99999999644
No 65
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=76.22 E-value=3 Score=35.87 Aligned_cols=48 Identities=8% Similarity=-0.132 Sum_probs=38.0
Q ss_pred CCCCCcEEEEECCCCcccHH-HHHHHHHHHHhcCCCeEEEEEeCccchhhhh
Q 011106 1 MAQSKENIVMFPFMAQGHII-PFLALALHIEQRHKNYSITFVSTPLNIKKLK 51 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~-p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~ 51 (493)
|..+.+||++--.|+ +..+ -.+.|.+.|++ +|++|.++.++.....+.
T Consensus 3 m~l~~k~I~lgiTGs-~aa~~k~~~ll~~L~~--~g~eV~vv~T~~A~~~i~ 51 (201)
T 3lqk_A 3 MNFAGKHVGFGLTGS-HCTYHEVLPQMERLVE--LGAKVTPFVTHTVQTTDT 51 (201)
T ss_dssp CCCTTCEEEEECCSC-GGGGGGTHHHHHHHHH--TTCEEEEECSSCSCCTTC
T ss_pred CCcCCCEEEEEEECh-HHHHHHHHHHHHHHhh--CCCEEEEEEChhHHHHHH
Confidence 555567898888887 5555 79999999999 999999999876554443
No 66
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=75.99 E-value=14 Score=32.79 Aligned_cols=100 Identities=12% Similarity=0.101 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHhhhhH
Q 011106 22 FLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLPYNLVIHLLRASTSLKP 101 (493)
Q Consensus 22 ~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (493)
+..|++.|.+ .| +|+++.+...+.-.-....-...+++..+... ++. .. ......|..... -
T Consensus 16 i~aL~~~l~~--~g-~V~VVAP~~~~Sg~g~siTl~~pl~~~~~~~~---~~~-~~-~~v~GTPaDCV~---l------- 77 (247)
T 1j9j_A 16 IIVLAELLSE--EH-EVFVVAPDKERSATGHSITIHVPLWMKKVFIS---ERV-VA-YSTTGTPADCVK---L------- 77 (247)
T ss_dssp HHHHHHHHTT--TS-EEEEEEESSCCTTCTTCCCCSSCCCEEECCCS---SSE-EE-EEESSCHHHHHH---H-------
T ss_pred HHHHHHHHHh--CC-CEEEEecCCCCcCCcccccCCCCeEEEEeccC---CCC-ce-EEECCcHHHHHH---H-------
Confidence 7789999988 88 89999977654444332211133444444310 000 01 112222321110 1
Q ss_pred HHHHHHHHhhcCCCCCcEEEEC----------Ccc---hhhHHHHHHcCCceEEEec
Q 011106 102 AFKEVISSLINQGRPPLCIIAD----------IFF---GWTCGVAKELNVFHAIFSG 145 (493)
Q Consensus 102 ~l~~~l~~~~~~~~~pDlvI~D----------~~~---~~~~~~A~~lgiP~i~~~~ 145 (493)
.+..++ ..+||+||+- .+. ..+++-|..+|||.|.+|.
T Consensus 78 al~~l~------~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 128 (247)
T 1j9j_A 78 AYNVVM------DKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISS 128 (247)
T ss_dssp HHHTTS------TTCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHhhc------cCCCCEEEECCccCCCCCcCeecchhHHHHHHHHhcCCCeEEEec
Confidence 112222 1349999964 222 3555667889999999975
No 67
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=75.67 E-value=4.7 Score=36.00 Aligned_cols=42 Identities=12% Similarity=-0.043 Sum_probs=28.0
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhh
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKL 50 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v 50 (493)
++|||+.-==+. |.--+..|++.|.+ +|+|+++.+...+.-.
T Consensus 11 ~m~ILlTNDDGi-~apGi~aL~~~l~~---~~~V~VVAP~~~~Sg~ 52 (261)
T 3ty2_A 11 KLRLLLSNDDGV-YAKGLAILAKTLAD---LGEVDVVAPDRNRSGA 52 (261)
T ss_dssp CCEEEEECSSCT-TCHHHHHHHHHHTT---TSEEEEEEESSCCTTC
T ss_pred CCeEEEEcCCCC-CCHHHHHHHHHHHh---cCCEEEEecCCCCcCc
Confidence 578887763222 33346788888866 7899999977654433
No 68
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=75.60 E-value=4.6 Score=38.15 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=33.7
Q ss_pred CcEEEEEC-CCCcccHHHHHHHHHHHH--hcCCCeEEEEEeCccc
Q 011106 5 KENIVMFP-FMAQGHIIPFLALALHIE--QRHKNYSITFVSTPLN 46 (493)
Q Consensus 5 ~~~il~~~-~~~~GH~~p~l~LA~~L~--~~~~Gh~Vt~~~~~~~ 46 (493)
.++|++++ -++-|=..-...||..|+ . +|++|.++.....
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~--~g~~vllid~D~~ 59 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQ--PNEQFLLISTDPA 59 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHC--TTSCEEEEECCSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhc--CCCeEEEEECCCC
Confidence 35677776 589999999999999999 8 9999999987643
No 69
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=75.46 E-value=6.3 Score=40.65 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=25.7
Q ss_pred HHhhccCCcCceeec---cCch-hHHHHHHhCCcEeccccc
Q 011106 356 LEVLSHRATCAFLSH---CGWN-SVLEALIHGVPIIGWPMA 392 (493)
Q Consensus 356 ~~lL~~~~v~~~I~H---gG~g-s~~eal~~GvP~l~~P~~ 392 (493)
.++++.+++ ||.- =|+| +.+||+++|+|+|+.-..
T Consensus 513 ~~~~~~adv--fV~PS~~EgfGl~~LEAmA~G~PvI~s~~g 551 (725)
T 3nb0_A 513 DEFVRGCHL--GVFPSYYEPWGYTPAECTVMGVPSITTNVS 551 (725)
T ss_dssp HHHHHHCSE--EECCCSSBSSCHHHHHHHHTTCCEEEETTB
T ss_pred HHHHhhceE--EEeccccCCCCHHHHHHHHcCCCEEEeCCC
Confidence 457888887 5533 3444 889999999999986543
No 70
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=74.26 E-value=9.9 Score=35.56 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=33.3
Q ss_pred cEEEEEC-CCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccc
Q 011106 6 ENIVMFP-FMAQGHIIPFLALALHIEQRHKNYSITFVSTPLN 46 (493)
Q Consensus 6 ~~il~~~-~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~ 46 (493)
++|+|++ -++-|=..-...||..|++ +|++|.++.....
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~--~g~~vllid~D~~ 55 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAK--VRRSVLLLSTDPA 55 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTT--SSSCEEEEECCSS
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHh--CCCcEEEEECCCC
Confidence 5666666 4899999999999999999 9999999987643
No 71
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=73.75 E-value=9.7 Score=33.24 Aligned_cols=150 Identities=13% Similarity=0.089 Sum_probs=80.4
Q ss_pred CcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHH
Q 011106 278 NSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLE 357 (493)
Q Consensus 278 ~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~ 357 (493)
++++.|+.|.+. ...+..|.+.+..+.++... +.+.+..-.. ..++.+.....+.+
T Consensus 32 k~VLVVGgG~va-------~~ka~~Ll~~GA~VtVvap~---------------~~~~l~~l~~--~~~i~~i~~~~~~~ 87 (223)
T 3dfz_A 32 RSVLVVGGGTIA-------TRRIKGFLQEGAAITVVAPT---------------VSAEINEWEA--KGQLRVKRKKVGEE 87 (223)
T ss_dssp CCEEEECCSHHH-------HHHHHHHGGGCCCEEEECSS---------------CCHHHHHHHH--TTSCEEECSCCCGG
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCEEEEECCC---------------CCHHHHHHHH--cCCcEEEECCCCHh
Confidence 558888777443 33456666778888776542 1122222221 23444433333345
Q ss_pred hhccCCcCceeeccCchhHHHHHHhCCcEecccc-cccchhhHH-----HHhhhhceeEEeecCCCCccCHHHHHHHHHH
Q 011106 358 VLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPM-AAEQFFNAK-----FLEQEMGVCVEVARGKTCEVKHEDVVAKIEL 431 (493)
Q Consensus 358 lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~-~~DQ~~na~-----~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~ 431 (493)
.|..+++ +|.--|.-.+.+.++.-.- ..+|. ..|.+..+. .+.+- ++-+.+..+...-.-+..|++.|.+
T Consensus 88 dL~~adL--VIaAT~d~~~N~~I~~~ak-~gi~VNvvD~p~~~~f~~Paiv~rg-~l~iaIST~G~sP~la~~iR~~ie~ 163 (223)
T 3dfz_A 88 DLLNVFF--IVVATNDQAVNKFVKQHIK-NDQLVNMASSFSDGNIQIPAQFSRG-RLSLAISTDGASPLLTKRIKEDLSS 163 (223)
T ss_dssp GSSSCSE--EEECCCCTHHHHHHHHHSC-TTCEEEC-----CCSEECCEEEEET-TEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HhCCCCE--EEECCCCHHHHHHHHHHHh-CCCEEEEeCCcccCeEEEeeEEEeC-CEEEEEECCCCCcHHHHHHHHHHHH
Confidence 5666665 8877777666666554322 33332 235444333 33333 4555555523333445778888888
Q ss_pred HhcCCchhHHHHHHHHHHHHHHHHhh
Q 011106 432 VMNETDKGKEIRRKVSEVREMIKNAM 457 (493)
Q Consensus 432 ~l~~~~~~~~~~~~a~~l~~~~~~~~ 457 (493)
+|.. ....+-+.+.++++.+++..
T Consensus 164 ~lp~--~~~~~~~~~~~~R~~vk~~~ 187 (223)
T 3dfz_A 164 NYDE--SYTQYTQFLYECRVLIHRLN 187 (223)
T ss_dssp HSCT--HHHHHHHHHHHHHHHHHHCC
T ss_pred HccH--HHHHHHHHHHHHHHHHHHHC
Confidence 8843 23368888888888887544
No 72
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=72.88 E-value=27 Score=29.07 Aligned_cols=79 Identities=13% Similarity=0.087 Sum_probs=43.8
Q ss_pred eEEeeccCh-HHhhccCCcCceeeccCchhHH---HHHHhCCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCH
Q 011106 347 LLMKNWAPQ-LEVLSHRATCAFLSHCGWNSVL---EALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKH 422 (493)
Q Consensus 347 v~~~~~~pq-~~lL~~~~v~~~I~HgG~gs~~---eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~ 422 (493)
..+++..++ ..++...+-..++--||.||+- |++.+++|++++|.+. .....+....--.+.+. -++
T Consensus 91 ~i~~~~~~~Rk~~m~~~sda~IvlpGg~GTL~E~~~al~~~kpV~~l~~~~---~~~gfi~~~~~~~i~~~------~~~ 161 (176)
T 2iz6_A 91 PIVTGLGSARDNINALSSNVLVAVGMGPGTAAEVALALKAKKPVVLLGTQP---EAEKFFTSLDAGLVHVA------ADV 161 (176)
T ss_dssp EEECCCCSSSCCCCGGGCSEEEEESCCHHHHHHHHHHHHTTCCEEEESCCH---HHHHHHHHHCTTTEEEE------SSH
T ss_pred eEEcCCHHHHHHHHHHhCCEEEEecCCccHHHHHHHHHHhCCcEEEEcCcc---cccccCChhhcCeEEEc------CCH
Confidence 344555555 3344333334567779999765 5578999999999832 11112221101122222 367
Q ss_pred HHHHHHHHHHhc
Q 011106 423 EDVVAKIELVMN 434 (493)
Q Consensus 423 ~~l~~ai~~~l~ 434 (493)
+++.+.+.+.+.
T Consensus 162 ~e~~~~l~~~~~ 173 (176)
T 2iz6_A 162 AGAIAAVKQLLA 173 (176)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766553
No 73
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=72.73 E-value=17 Score=32.89 Aligned_cols=99 Identities=12% Similarity=0.027 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCChhhHHHHHHHHhhhhH
Q 011106 22 FLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLPYNLVIHLLRASTSLKP 101 (493)
Q Consensus 22 ~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (493)
+..|++.|.+ .| +|+++.+...+.-.-....-...+++..++.. +. .. ......|..... -
T Consensus 16 i~aL~~aL~~--~g-~V~VVAP~~~qSg~g~siTl~~pl~~~~~~~~----~~-~~-~~v~GTPaDCV~----------l 76 (280)
T 1l5x_A 16 LRLLYQFALS--LG-DVDVVAPESPKSATGLGITLHKPLRMYEVDLC----GF-RA-IATSGTPSDTVY----------L 76 (280)
T ss_dssp HHHHHHHHGG--GS-EEEEEEESSCTTTSCSSCCCSSCBCEEEEECS----SS-EE-EEESSCHHHHHH----------H
T ss_pred HHHHHHHHHh--CC-CEEEEecCCCCcCCcccccCCCCeEEEEeccC----CC-ce-EEECCcHHHHHH----------H
Confidence 7789999998 88 89999977664444332221133444444321 10 01 112233321111 1
Q ss_pred HHHHHHHHhhcCCCCCcEEEEC-----------Cc---chhhHHHHHHcCCceEEEech
Q 011106 102 AFKEVISSLINQGRPPLCIIAD-----------IF---FGWTCGVAKELNVFHAIFSGS 146 (493)
Q Consensus 102 ~l~~~l~~~~~~~~~pDlvI~D-----------~~---~~~~~~~A~~lgiP~i~~~~~ 146 (493)
.+..+ . .+||+||+- .+ +..+++-|..+|||.|.+|..
T Consensus 77 al~~l--~-----~~PDLVvSGIN~G~Nlg~d~v~ySGTVgAA~Ea~~~GiPaIA~S~~ 128 (280)
T 1l5x_A 77 ATFGL--G-----RKYDIVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPALAYSAY 128 (280)
T ss_dssp HHHHH--T-----SCCSEEEEEEEEBCCCSHHHHTTCHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHhcC--C-----CCCCEEEECCccCCcCCccccccchhHHHHHHHHHcCCCeEEEEcc
Confidence 22222 1 249999963 22 235556678899999999863
No 74
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=72.45 E-value=5.2 Score=33.49 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=36.9
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
+.+||++.-.++.|=+. ...|.+.|++ +|++|.++.++...+.+..
T Consensus 4 m~k~IllgvTGs~aa~k-~~~ll~~L~~--~g~~V~vv~T~~A~~fi~~ 49 (175)
T 3qjg_A 4 MGENVLICLCGSVNSIN-ISHYIIELKS--KFDEVNVIASTNGRKFING 49 (175)
T ss_dssp -CCEEEEEECSSGGGGG-HHHHHHHHTT--TCSEEEEEECTGGGGGSCH
T ss_pred CCCEEEEEEeCHHHHHH-HHHHHHHHHH--CCCEEEEEECcCHHHHhhH
Confidence 34788888888866654 8999999999 9999999998877666654
No 75
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=71.01 E-value=16 Score=34.04 Aligned_cols=102 Identities=9% Similarity=-0.033 Sum_probs=54.4
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeC-cc-------chhhhhccCCCCCCceEEeccCCCCCCCCC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVST-PL-------NIKKLKSSLPPNSSIDLHEIPFNSSSHGLP 75 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~-~~-------~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~ 75 (493)
+++||+|+. --+....+.++|.+ .||+|..+.+ +. ..+...+ .++.+..+. .+.
T Consensus 21 ~~mrIvf~G-----~~~fa~~~L~~L~~--~~~~i~~Vvt~pd~~~~~~~v~~~A~~-----~gIpv~~~~------~~~ 82 (329)
T 2bw0_A 21 QSMKIAVIG-----QSLFGQEVYCHLRK--EGHEVVGVFTVPDKDGKADPLGLEAEK-----DGVPVFKYS------RWR 82 (329)
T ss_dssp CCCEEEEEC-----CHHHHHHHHHHHHH--TTCEEEEEEECCCCSSCCCHHHHHHHH-----HTCCEEECS------CCE
T ss_pred CCCEEEEEc-----CcHHHHHHHHHHHH--CCCeEEEEEeCCCcCCCCCHHHHHHHH-----cCCCEEecC------ccc
Confidence 458999993 12333456788999 8999876654 21 2222233 344444333 110
Q ss_pred CCCCCCCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcch-hhHHHHHHcCCceEEEechh
Q 011106 76 PNSENCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFG-WTCGVAKELNVFHAIFSGSG 147 (493)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~-~~~~~A~~lgiP~i~~~~~~ 147 (493)
. . ....+++.+.+++.. ||++|+-.|.. -...+-......++-+.++.
T Consensus 83 ~-----~--------------~~~~~~~~~~l~~~~-----~Dliv~a~y~~ilp~~il~~~~~g~iNiHpSL 131 (329)
T 2bw0_A 83 A-----K--------------GQALPDVVAKYQALG-----AELNVLPFCSQFIPMEIISAPRHGSIIYHPSL 131 (329)
T ss_dssp E-----T--------------TEECHHHHHHHHTTC-----CSEEEESSCSSCCCHHHHTCSTTCEEEEESSC
T ss_pred c-----c--------------ccccHHHHHHHHhcC-----CCEEEEeehhhhCCHHHHhhCcCCEEEEcCCc
Confidence 0 0 011234556677777 99999876642 23334444455566665543
No 76
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=70.61 E-value=12 Score=36.22 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=25.6
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
|+.+.+||+++..+-. + | -+.++.++ .|++|+++.+.
T Consensus 1 M~~~~k~l~Il~~~~~-~--~--~i~~aa~~--lG~~vv~v~~~ 37 (425)
T 3vot_A 1 MTKRNKNLAIICQNKH-L--P--FIFEEAER--LGLKVTFFYNS 37 (425)
T ss_dssp -CCCCCEEEEECCCTT-C--C--HHHHHHHH--TTCEEEEEEET
T ss_pred CCCCCcEEEEECCChh-H--H--HHHHHHHH--CCCEEEEEECC
Confidence 8877889999975432 2 1 24577778 89999988644
No 77
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=69.71 E-value=30 Score=30.21 Aligned_cols=107 Identities=8% Similarity=-0.007 Sum_probs=60.4
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc-cc---hhhhhccCCCCCCceEEeccCCCCCCCCCCCCC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP-LN---IKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSE 79 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~-~~---~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~ 79 (493)
.++||+|+..++. + -+..+.++|.+...+++|..+.+. .. .+..++ .++.+..++.. .+
T Consensus 21 ~~~rI~~l~SG~g-~--~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~A~~-----~gIp~~~~~~~----~~----- 83 (229)
T 3auf_A 21 HMIRIGVLISGSG-T--NLQAILDGCREGRIPGRVAVVISDRADAYGLERARR-----AGVDALHMDPA----AY----- 83 (229)
T ss_dssp TCEEEEEEESSCC-H--HHHHHHHHHHTTSSSEEEEEEEESSTTCHHHHHHHH-----TTCEEEECCGG----GS-----
T ss_pred CCcEEEEEEeCCc-H--HHHHHHHHHHhCCCCCeEEEEEcCCCchHHHHHHHH-----cCCCEEEECcc----cc-----
Confidence 3569999876663 2 366777888872127887665543 21 233344 56666554411 00
Q ss_pred CCCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcch-hhHHHHHHcCCceEEEech
Q 011106 80 NCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFG-WTCGVAKELNVFHAIFSGS 146 (493)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~-~~~~~A~~lgiP~i~~~~~ 146 (493)
.. . +...+.+.+.|++.. ||+||+-.|.. -...+-..+...++-+.++
T Consensus 84 -----~~---r------~~~~~~~~~~l~~~~-----~Dliv~agy~~IL~~~~l~~~~~~~iNiHpS 132 (229)
T 3auf_A 84 -----PS---R------TAFDAALAERLQAYG-----VDLVCLAGYMRLVRGPMLTAFPNRILNIHPS 132 (229)
T ss_dssp -----SS---H------HHHHHHHHHHHHHTT-----CSEEEESSCCSCCCHHHHHHSTTCEEEEESS
T ss_pred -----cc---h------hhccHHHHHHHHhcC-----CCEEEEcChhHhCCHHHHhhccCCEEEEccC
Confidence 00 0 122245667778888 99999876643 3344445555566766554
No 78
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=69.61 E-value=2.5 Score=41.03 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=30.5
Q ss_pred CCcEEEEECCC---C--cccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 4 SKENIVMFPFM---A--QGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 4 ~~~~il~~~~~---~--~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
+++||++++.. . .|=......||+.|.+ +||+|++++..
T Consensus 45 ~~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~--~GheV~Vvt~~ 88 (413)
T 2x0d_A 45 KGKRLNLLVPSINQEHMFGGISTALKLFEQFDN--KKFKKRIILTD 88 (413)
T ss_dssp CSCEEEEEESCCCGGGCSHHHHHHHHHHTTSCT--TTCEEEEEESS
T ss_pred CCceEEEEeCCCCccccccHHHHHHHHHHHHHH--cCCceEEEEec
Confidence 46799988832 2 1444568999999999 99999999975
No 79
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=69.17 E-value=5.6 Score=31.74 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=34.1
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
.+++|++.+.++-+|-....-++..|.. .|++|.....
T Consensus 2 ~~~~vvla~~~~d~HdiG~~~v~~~l~~--~G~~Vi~lG~ 39 (137)
T 1ccw_A 2 EKKTIVLGVIGSDCHAVGNKILDHAFTN--AGFNVVNIGV 39 (137)
T ss_dssp CCCEEEEEEETTCCCCHHHHHHHHHHHH--TTCEEEEEEE
T ss_pred CCCEEEEEeCCCchhHHHHHHHHHHHHH--CCCEEEECCC
Confidence 4578999999999999999999999999 9999997764
No 80
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=66.92 E-value=19 Score=35.25 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=28.4
Q ss_pred HHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEE
Q 011106 102 AFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIF 143 (493)
Q Consensus 102 ~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~ 143 (493)
.+++++++.+ ||++|.... ...+|+++|||++.+
T Consensus 366 ~le~~i~~~~-----pDllig~~~---~~~~a~k~gip~~~~ 399 (458)
T 3pdi_B 366 DLEHAARAGQ-----AQLVIGNSH---ALASARRLGVPLLRA 399 (458)
T ss_dssp HHHHHHHHHT-----CSEEEECTT---HHHHHHHTTCCEEEC
T ss_pred HHHHHHHhcC-----CCEEEEChh---HHHHHHHcCCCEEEe
Confidence 4667778888 999999864 678999999999986
No 81
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=66.09 E-value=6 Score=34.08 Aligned_cols=47 Identities=6% Similarity=-0.156 Sum_probs=33.3
Q ss_pred CCCCCcEEEEECCCCcccHHH-HHHHHHHHHhcCCCeEEEEEeCccchhhh
Q 011106 1 MAQSKENIVMFPFMAQGHIIP-FLALALHIEQRHKNYSITFVSTPLNIKKL 50 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p-~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v 50 (493)
|..+.+||++.-.|+ +..+- ...|.+.|++ +|++|.++.++.....+
T Consensus 1 m~l~~k~IllgiTGs-iaayk~~~~ll~~L~~--~g~eV~vv~T~~A~~vl 48 (207)
T 3mcu_A 1 MSLKGKRIGFGFTGS-HCTYEEVMPHLEKLIA--EGAEVRPVVSYTVQSTN 48 (207)
T ss_dssp -CCTTCEEEEEECSC-GGGGTTSHHHHHHHHH--TTCEEEEEECC------
T ss_pred CCCCCCEEEEEEECh-HHHHHHHHHHHHHHHh--CCCEEEEEEehHHHHHH
Confidence 544567898888787 45665 8999999999 99999999988665443
No 82
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=65.88 E-value=16 Score=32.55 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=27.2
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
||||+.-==+. |.--+..|++.|++ .| +|+++.+...+.-.-.
T Consensus 2 M~ILlTNDDGi-~apGi~aL~~~L~~--~g-~V~VVAP~~~~Sg~g~ 44 (254)
T 2v4n_A 2 MRILLSNDDGV-HAPGIQTLAKALRE--FA-DVQVVAPDRNRSGASN 44 (254)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTT--TS-EEEEEEESSCCTTCTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHh--CC-cEEEEeeCCCCcCccC
Confidence 46666542222 33336789999988 76 9999997765444433
No 83
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=64.18 E-value=55 Score=30.20 Aligned_cols=34 Identities=15% Similarity=-0.065 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
+++||+|+-.+..+ +..-+.|.+ +||+|..+.+.
T Consensus 6 ~~mrivf~Gt~~fa-----~~~L~~L~~--~~~~v~~Vvt~ 39 (318)
T 3q0i_A 6 QSLRIVFAGTPDFA-----ARHLAALLS--SEHEIIAVYTQ 39 (318)
T ss_dssp -CCEEEEECCSHHH-----HHHHHHHHT--SSSEEEEEECC
T ss_pred cCCEEEEEecCHHH-----HHHHHHHHH--CCCcEEEEEcC
Confidence 47899999876433 344577888 89998766653
No 84
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=61.94 E-value=43 Score=30.85 Aligned_cols=33 Identities=12% Similarity=-0.078 Sum_probs=24.5
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
++||+|+-.+..+- ..-++|.+ .||+|..+.+.
T Consensus 2 ~mrivf~Gtp~fa~-----~~L~~L~~--~~~~v~~Vvt~ 34 (314)
T 3tqq_A 2 SLKIVFAGTPQFAV-----PTLRALID--SSHRVLAVYTQ 34 (314)
T ss_dssp CCEEEEEECSGGGH-----HHHHHHHH--SSSEEEEEECC
T ss_pred CcEEEEECCCHHHH-----HHHHHHHH--CCCeEEEEEeC
Confidence 47999998886654 33577888 89998776653
No 85
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=61.49 E-value=30 Score=29.93 Aligned_cols=103 Identities=14% Similarity=0.052 Sum_probs=56.7
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCe--EEEEEe-Cccc---hhhhhccCCCCCCceEEeccCCCCCCCCCCCCC
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNY--SITFVS-TPLN---IKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSE 79 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh--~Vt~~~-~~~~---~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~ 79 (493)
+||+|+..++.. -+..+.++|.+ .+| +|..+. .+.. .+..++ .++.+..++.. .+
T Consensus 2 ~rI~vl~SG~g~---~~~~~l~~l~~--~~~~~~i~~Vvs~~~~~~~~~~A~~-----~gIp~~~~~~~----~~----- 62 (216)
T 2ywr_A 2 LKIGVLVSGRGS---NLQAIIDAIES--GKVNASIELVISDNPKAYAIERCKK-----HNVECKVIQRK----EF----- 62 (216)
T ss_dssp EEEEEEECSCCH---HHHHHHHHHHT--TSSCEEEEEEEESCTTCHHHHHHHH-----HTCCEEECCGG----GS-----
T ss_pred CEEEEEEeCCcH---HHHHHHHHHHh--CCCCCeEEEEEeCCCChHHHHHHHH-----cCCCEEEeCcc----cc-----
Confidence 588888665542 46677788888 777 765554 3322 233334 34455443310 00
Q ss_pred CCCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcch-hhHHHHHHcCCceEEEech
Q 011106 80 NCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFG-WTCGVAKELNVFHAIFSGS 146 (493)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~-~~~~~A~~lgiP~i~~~~~ 146 (493)
.. -+...+.+.+.+++.. ||+||+-.+.. -...+-......++-+.++
T Consensus 63 -----~~---------r~~~~~~~~~~l~~~~-----~Dliv~a~y~~il~~~~l~~~~~~~iNiHpS 111 (216)
T 2ywr_A 63 -----PS---------KKEFEERMALELKKKG-----VELVVLAGFMRILSHNFLKYFPNKVINIHPS 111 (216)
T ss_dssp -----SS---------HHHHHHHHHHHHHHTT-----CCEEEESSCCSCCCHHHHTTSTTCEEEEESS
T ss_pred -----cc---------hhhhhHHHHHHHHhcC-----CCEEEEeCchhhCCHHHHhhccCCeEEEcCC
Confidence 00 0112245667778888 99999876543 3334444455556666554
No 86
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=60.68 E-value=10 Score=32.37 Aligned_cols=44 Identities=14% Similarity=0.079 Sum_probs=37.1
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCC-CeEEEEEeCccchhhhhc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHK-NYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~-Gh~Vt~~~~~~~~~~v~~ 52 (493)
+||++--.|+.|-+. ...|.+.|++ + |++|.++.++.....+..
T Consensus 1 ~~IllgvTGsiaa~k-~~~ll~~L~~--~~g~~V~vv~T~~A~~fi~~ 45 (197)
T 1sbz_A 1 MKLIVGMTGATGAPL-GVALLQALRE--MPNVETHLVMSKWAKTTIEL 45 (197)
T ss_dssp CEEEEEECSSSCHHH-HHHHHHHHHT--CTTCEEEEEECHHHHHHHHH
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHh--ccCCEEEEEECchHHHHhHH
Confidence 478888888877765 8999999999 8 999999999888777764
No 87
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=60.68 E-value=54 Score=28.16 Aligned_cols=104 Identities=7% Similarity=0.006 Sum_probs=58.7
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCC--CeEEEEEeCcc----chhhhhccCCCCCCceEEeccCCCCCCCCCCCC
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHK--NYSITFVSTPL----NIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNS 78 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~--Gh~Vt~~~~~~----~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~ 78 (493)
++||+++-.++. + -+..+.++|.+ . +|+|..+.+.. ..+...+ .++.+..++.. .+
T Consensus 3 m~ki~vl~sG~g-~--~~~~~l~~l~~--~~l~~~I~~Vit~~~~~~v~~~A~~-----~gIp~~~~~~~----~~---- 64 (212)
T 3av3_A 3 MKRLAVFASGSG-T--NFQAIVDAAKR--GDLPARVALLVCDRPGAKVIERAAR-----ENVPAFVFSPK----DY---- 64 (212)
T ss_dssp CEEEEEECCSSC-H--HHHHHHHHHHT--TCCCEEEEEEEESSTTCHHHHHHHH-----TTCCEEECCGG----GS----
T ss_pred CcEEEEEEECCc-H--HHHHHHHHHHh--CCCCCeEEEEEeCCCCcHHHHHHHH-----cCCCEEEeCcc----cc----
Confidence 367888776653 3 36667778887 5 79987665432 2233334 45555544310 00
Q ss_pred CCCCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcch-hhHHHHHHcCCceEEEech
Q 011106 79 ENCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFG-WTCGVAKELNVFHAIFSGS 146 (493)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~-~~~~~A~~lgiP~i~~~~~ 146 (493)
.. -+...+.+.+.+++.. ||+||.-.|.. -...+-..+...++-+.++
T Consensus 65 ------~~---------~~~~~~~~~~~l~~~~-----~Dliv~a~y~~il~~~~l~~~~~~~iNiHpS 113 (212)
T 3av3_A 65 ------PS---------KAAFESEILRELKGRQ-----IDWIALAGYMRLIGPTLLSAYEGKIVNIHPS 113 (212)
T ss_dssp ------SS---------HHHHHHHHHHHHHHTT-----CCEEEESSCCSCCCHHHHHHTTTCEEEEESS
T ss_pred ------cc---------hhhhHHHHHHHHHhcC-----CCEEEEchhhhhCCHHHHhhhcCCEEEEecC
Confidence 00 0112245667778888 99999876543 3344445555566766554
No 88
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=60.60 E-value=13 Score=34.83 Aligned_cols=41 Identities=10% Similarity=0.196 Sum_probs=34.3
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhh
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKL 50 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v 50 (493)
+++..-|+.|=..-++.+|..+.. .|+.|.|++.+...+.+
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEms~~ql 89 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEMSAEQL 89 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSSCHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCCCHHHH
Confidence 556667999999999999999999 99999999987654443
No 89
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=60.14 E-value=31 Score=31.76 Aligned_cols=35 Identities=6% Similarity=-0.015 Sum_probs=25.2
Q ss_pred CCCcEEEEECCCCcccHHHHHHHHHHHHhcCCC-eEEEEEeCc
Q 011106 3 QSKENIVMFPFMAQGHIIPFLALALHIEQRHKN-YSITFVSTP 44 (493)
Q Consensus 3 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~G-h~Vt~~~~~ 44 (493)
|++++|+++..+.. ++|++.|+++ .| ++|.++...
T Consensus 2 m~~~~Ili~g~g~~------~~l~~~l~~~-~~~~~v~~~d~~ 37 (331)
T 2pn1_A 2 MQKPHLLITSAGRR------AKLVEYFVKE-FKTGRVSTADCS 37 (331)
T ss_dssp TTCCEEEEESCTTC------HHHHHHHHHH-CCSSEEEEEESC
T ss_pred CccceEEEecCCch------HHHHHHHHHh-cCCCEEEEEeCC
Confidence 56789999866554 4789999872 26 888877543
No 90
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=60.02 E-value=9.4 Score=32.10 Aligned_cols=44 Identities=7% Similarity=0.128 Sum_probs=36.0
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
+||++.-.|+.|=+ -...|.+.|++ +|++|.++.++.....+..
T Consensus 3 k~IllgvTGs~aa~-k~~~l~~~L~~--~g~~V~vv~T~~A~~fi~~ 46 (181)
T 1g63_A 3 GKLLICATASINVI-NINHYIVELKQ--HFDEVNILFSPSSKNFINT 46 (181)
T ss_dssp CCEEEEECSCGGGG-GHHHHHHHHTT--TSSCEEEEECGGGGGTSCG
T ss_pred CEEEEEEECHHHHH-HHHHHHHHHHH--CCCEEEEEEchhHHHHHHH
Confidence 57888777776655 67899999999 9999999998877666654
No 91
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=59.26 E-value=31 Score=32.92 Aligned_cols=34 Identities=9% Similarity=0.066 Sum_probs=26.7
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
.++||+++..+..+ +.+++++++ .|+++.++..+
T Consensus 6 ~~~~ilI~g~g~~~-----~~~~~a~~~--~G~~~v~v~~~ 39 (403)
T 4dim_A 6 DNKRLLILGAGRGQ-----LGLYKAAKE--LGIHTIAGTMP 39 (403)
T ss_dssp CCCEEEEECCCGGG-----HHHHHHHHH--HTCEEEEEECS
T ss_pred CCCEEEEECCcHhH-----HHHHHHHHH--CCCEEEEEcCC
Confidence 45689888766543 568999999 99999999754
No 92
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=58.86 E-value=14 Score=31.37 Aligned_cols=44 Identities=23% Similarity=0.200 Sum_probs=38.0
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
+||++.-.|+.|-+ =...|.+.|++ +|++|.++.++.....+..
T Consensus 2 k~IllgvTGs~aa~-k~~~l~~~L~~--~g~~V~vv~T~~A~~~i~~ 45 (189)
T 2ejb_A 2 QKIALCITGASGVI-YGIKLLQVLEE--LDFSVDLVISRNAKVVLKE 45 (189)
T ss_dssp CEEEEEECSSTTHH-HHHHHHHHHHH--TTCEEEEEECHHHHHHHHH
T ss_pred CEEEEEEECHHHHH-HHHHHHHHHHH--CCCEEEEEEChhHHHHhhH
Confidence 58888888988854 58999999999 9999999999988777775
No 93
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=58.82 E-value=44 Score=28.67 Aligned_cols=108 Identities=13% Similarity=0.049 Sum_probs=59.1
Q ss_pred CCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc--c--hhhhhccCCCCCCceEEeccCCCCCCCCCCCC
Q 011106 3 QSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL--N--IKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNS 78 (493)
Q Consensus 3 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~--~--~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~ 78 (493)
|+++||+++..+. || -+.+|.+++.+..-.++|..+.+.. . .+..++ .++.+..++.. .+
T Consensus 5 m~~~ri~vl~SG~-gs--nl~all~~~~~~~l~~~I~~Visn~~~a~~l~~A~~-----~gIp~~~~~~~----~~---- 68 (209)
T 4ds3_A 5 MKRNRVVIFISGG-GS--NMEALIRAAQAPGFPAEIVAVFSDKAEAGGLAKAEA-----AGIATQVFKRK----DF---- 68 (209)
T ss_dssp -CCEEEEEEESSC-CH--HHHHHHHHHTSTTCSEEEEEEEESCTTCTHHHHHHH-----TTCCEEECCGG----GS----
T ss_pred CCCccEEEEEECC-cH--HHHHHHHHHHcCCCCcEEEEEEECCcccHHHHHHHH-----cCCCEEEeCcc----cc----
Confidence 4567898887665 43 2556667776611237887776532 1 223444 45566554411 00
Q ss_pred CCCCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcch-hhHHHHHHcCCceEEEech
Q 011106 79 ENCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFG-WTCGVAKELNVFHAIFSGS 146 (493)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~-~~~~~A~~lgiP~i~~~~~ 146 (493)
.. -+...+++.+.+++.. ||+||+-.|.. -...+-..+.-.++-+.++
T Consensus 69 ------~~---------r~~~d~~~~~~l~~~~-----~Dliv~agy~~il~~~~l~~~~~~~iNiHpS 117 (209)
T 4ds3_A 69 ------AS---------KEAHEDAILAALDVLK-----PDIICLAGYMRLLSGRFIAPYEGRILNIHPS 117 (209)
T ss_dssp ------SS---------HHHHHHHHHHHHHHHC-----CSEEEESSCCSCCCHHHHGGGTTCEEEEESS
T ss_pred ------CC---------HHHHHHHHHHHHHhcC-----CCEEEEeccccCcCHHHHhhccCCeEEECCc
Confidence 00 0112356777888888 99999886643 3334444455556666544
No 94
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=57.24 E-value=66 Score=29.60 Aligned_cols=34 Identities=9% Similarity=-0.133 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
.++||+|+..+..+ ....++|.+ .||+|..+.+.
T Consensus 2 ~~mrIvf~Gt~~fa-----~~~L~~L~~--~~~~i~~Vvt~ 35 (314)
T 1fmt_A 2 ESLRIIFAGTPDFA-----ARHLDALLS--SGHNVVGVFTQ 35 (314)
T ss_dssp CCCEEEEEECSHHH-----HHHHHHHHH--TTCEEEEEECC
T ss_pred CCCEEEEEecCHHH-----HHHHHHHHH--CCCcEEEEEeC
Confidence 46899999875433 445577888 89998766543
No 95
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=57.02 E-value=37 Score=29.30 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=59.8
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc--c--hhhhhccCCCCCCceEEeccCCCCCCCCCC
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL--N--IKKLKSSLPPNSSIDLHEIPFNSSSHGLPP 76 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~--~--~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~ 76 (493)
|..+++||+++..+..+ -+.+|.++..+. -+++|..+.+.. . .+..++ .++.+..++.. .+
T Consensus 1 ~~~~~~riavl~SG~Gs---nl~all~~~~~~-~~~eI~~Vis~~~~a~~~~~A~~-----~gIp~~~~~~~----~~-- 65 (215)
T 3tqr_A 1 MNREPLPIVVLISGNGT---NLQAIIGAIQKG-LAIEIRAVISNRADAYGLKRAQQ-----ADIPTHIIPHE----EF-- 65 (215)
T ss_dssp ---CCEEEEEEESSCCH---HHHHHHHHHHTT-CSEEEEEEEESCTTCHHHHHHHH-----TTCCEEECCGG----GS--
T ss_pred CCCCCcEEEEEEeCCcH---HHHHHHHHHHcC-CCCEEEEEEeCCcchHHHHHHHH-----cCCCEEEeCcc----cc--
Confidence 66678899888766543 345566666552 368888766532 1 233444 45666655411 01
Q ss_pred CCCCCCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcch-hhHHHHHHcCCceEEEech
Q 011106 77 NSENCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFG-WTCGVAKELNVFHAIFSGS 146 (493)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~-~~~~~A~~lgiP~i~~~~~ 146 (493)
+.+ ....+++.+.+++.. ||+||+-.|.. -...+-....-.++-+.++
T Consensus 66 --------~~r---------~~~d~~~~~~l~~~~-----~Dliv~agy~~il~~~~l~~~~~~~iNiHpS 114 (215)
T 3tqr_A 66 --------PSR---------TDFESTLQKTIDHYD-----PKLIVLAGFMRKLGKAFVSHYSGRMINIHPS 114 (215)
T ss_dssp --------SSH---------HHHHHHHHHHHHTTC-----CSEEEESSCCSCCCHHHHHHTTTSEEEEESS
T ss_pred --------Cch---------hHhHHHHHHHHHhcC-----CCEEEEccchhhCCHHHHhhccCCeEEeCcc
Confidence 000 012246677778877 99999876643 3334445555566666554
No 96
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=56.98 E-value=17 Score=31.35 Aligned_cols=44 Identities=16% Similarity=0.113 Sum_probs=37.4
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
++||++.-.++.+-+. ...|.+.|++ +| +|.++.++.....+..
T Consensus 19 ~k~IllgvTGsiaa~k-~~~ll~~L~~--~g-~V~vv~T~~A~~fv~~ 62 (209)
T 1mvl_A 19 KPRVLLAASGSVAAIK-FGNLCHCFTE--WA-EVRAVVTKSSLHFLDK 62 (209)
T ss_dssp CCEEEEEECSSGGGGG-HHHHHHHHHT--TS-EEEEEECTGGGGTCCG
T ss_pred CCEEEEEEeCcHHHHH-HHHHHHHHhc--CC-CEEEEEcchHHHhcCH
Confidence 5689999999988766 8999999999 99 9999998877666654
No 97
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=56.84 E-value=19 Score=28.78 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=36.6
Q ss_pred CCcEEEEEC-CC-CcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccC
Q 011106 4 SKENIVMFP-FM-AQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSL 54 (493)
Q Consensus 4 ~~~~il~~~-~~-~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~ 54 (493)
+.+|++++- .| ..-.+.-.+-++..|++ +||+|++++++....+++-+.
T Consensus 5 ~~m~~LilLGCPE~Pvq~p~~lYl~~~Lk~--~G~~v~VA~npAAlkLlevaD 55 (157)
T 1kjn_A 5 STGKALMVLGCPESPVQIPLAIYTSHKLKK--KGFRVTVTANPAALRLVQVAD 55 (157)
T ss_dssp -CCEEEEECCCSCSTTHHHHHHHHHHHHHH--TTCEEEEEECHHHHHHHHHHS
T ss_pred cceeeeEEecCCCCcchhhHHHHHHHHHHh--cCCeeEEecCHHHHhheeccC
Confidence 345555554 45 44555557889999999 999999999999888888643
No 98
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=56.63 E-value=69 Score=27.54 Aligned_cols=37 Identities=8% Similarity=0.203 Sum_probs=25.0
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
|++++++|+++- .|-.-...|...|.. .|++|..+.+
T Consensus 1 M~~m~~~ILivd----d~~~~~~~l~~~L~~--~g~~v~~~~~ 37 (238)
T 2gwr_A 1 MDTMRQRILVVD----DDASLAEMLTIVLRG--EGFDTAVIGD 37 (238)
T ss_dssp -CCCCCEEEEEC----SCHHHHHHHHHHHHH--TTCEEEEECC
T ss_pred CCcccCeEEEEe----CCHHHHHHHHHHHHH--CCCEEEEECC
Confidence 676667888875 344455667778888 8988776543
No 99
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=55.59 E-value=16 Score=34.83 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=30.9
Q ss_pred cEEEEEC-CCCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 6 ENIVMFP-FMAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 6 ~~il~~~-~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
++|++++ -++.|-..-...||..|.+ +|++|.++..
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~--~g~~vllvd~ 38 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLAS--QGKRVLLAGL 38 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH--CCCCeEEEeC
Confidence 4566665 4789999999999999999 9999999987
No 100
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=54.68 E-value=12 Score=30.73 Aligned_cols=39 Identities=8% Similarity=0.169 Sum_probs=35.0
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
++++|++.+.++-+|-....-++..|.. .|++|.+....
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~--~G~eVi~lG~~ 55 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRD--AGFEVVYTGLR 55 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHH--TTCEEECCCSB
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHH--CCCEEEECCCC
Confidence 4679999999999999999999999999 99999988643
No 101
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=53.60 E-value=8.9 Score=30.94 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=26.9
Q ss_pred CCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 3 QSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 3 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
|+++|++++-+ |++- ..+++.|.+ .||+|+++...
T Consensus 1 ~~~~~vlI~G~---G~vG--~~la~~L~~--~g~~V~vid~~ 35 (153)
T 1id1_A 1 HRKDHFIVCGH---SILA--INTILQLNQ--RGQNVTVISNL 35 (153)
T ss_dssp CCCSCEEEECC---SHHH--HHHHHHHHH--TTCCEEEEECC
T ss_pred CCCCcEEEECC---CHHH--HHHHHHHHH--CCCCEEEEECC
Confidence 34678888854 4443 688999999 99999999863
No 102
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=53.37 E-value=59 Score=27.14 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=29.5
Q ss_pred EEEEEC-CCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 7 NIVMFP-FMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 7 ~il~~~-~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
.|+++. -++-|=..-...||..|.+ +|++|.++-..
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~--~g~~vlliD~D 39 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSR--SGYNIAVVDTD 39 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHH--CCCeEEEEECC
Confidence 344443 4789999999999999999 99999999754
No 103
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=51.62 E-value=11 Score=32.00 Aligned_cols=45 Identities=9% Similarity=-0.031 Sum_probs=36.7
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
.+||++.-.|+.|=+. ...|.+.|.+ +|++|.++.++.....+..
T Consensus 8 ~k~IllgvTGs~aa~k-~~~l~~~L~~--~g~~V~vv~T~~A~~fi~~ 52 (194)
T 1p3y_1 8 DKKLLIGICGSISSVG-ISSYLLYFKS--FFKEIRVVMTKTAEDLIPA 52 (194)
T ss_dssp GCEEEEEECSCGGGGG-THHHHHHHTT--TSSEEEEEECHHHHHHSCH
T ss_pred CCEEEEEEECHHHHHH-HHHHHHHHHH--CCCEEEEEEchhHHHHHHH
Confidence 4688888888877664 7899999999 9999999998877666544
No 104
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=51.50 E-value=19 Score=30.95 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=35.4
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
+.+|++.+.++-.|-....-++..|.. +|++|.++....
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~--~G~~v~~LG~~v 126 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLES--GGFTVYNLGVDI 126 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHH--TTCEEEECCSSB
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHH--CCCEEEECCCCC
Confidence 568999999999999999999999999 999999987643
No 105
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=50.84 E-value=1.5e+02 Score=27.20 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=24.8
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
.++||+|+-.+..+- ..-+.|.+ .||+|..+.+.
T Consensus 3 ~mmrIvf~Gtp~fa~-----~~L~~L~~--~~~~v~~Vvt~ 36 (317)
T 3rfo_A 3 AMIKVVFMGTPDFSV-----PVLRRLIE--DGYDVIGVVTQ 36 (317)
T ss_dssp TTSEEEEECCSTTHH-----HHHHHHHH--TTCEEEEEECC
T ss_pred CceEEEEEeCCHHHH-----HHHHHHHH--CCCcEEEEEeC
Confidence 357999998886553 34577888 89998877654
No 106
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=50.68 E-value=31 Score=27.15 Aligned_cols=45 Identities=11% Similarity=-0.003 Sum_probs=32.0
Q ss_pred CcEEEEEC-CC--CcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhh
Q 011106 5 KENIVMFP-FM--AQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLK 51 (493)
Q Consensus 5 ~~~il~~~-~~--~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~ 51 (493)
++|++|+- .+ +.......+.+|....+ .||+|+++-...-...+.
T Consensus 15 ~~kl~ii~~sgP~~~~~~~~al~lA~~A~a--~g~eV~vFf~~dGV~~l~ 62 (134)
T 3mc3_A 15 XXXILIVVTHGPEDLDRTYAPLFMASISAS--MEYETSVFFMIXGPXLLD 62 (134)
T ss_dssp CCEEEEEECCCGGGTHHHHHHHHHHHHHHH--TTCEEEEEECTTGGGGGB
T ss_pred cceEEEEEccCCCCHHHHHHHHHHHHHHHH--CCCCEEEEEEeCcHHHHh
Confidence 34555554 44 46677788899998888 999999988765444443
No 107
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=50.61 E-value=73 Score=30.01 Aligned_cols=38 Identities=5% Similarity=0.018 Sum_probs=27.6
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
|+.++++|+++..+ . -...+++++++ .||+|..+....
T Consensus 7 m~~~~~~ili~g~g---~--~~~~~~~a~~~--~G~~v~~~~~~~ 44 (391)
T 1kjq_A 7 LRPAATRVMLLGSG---E--LGKEVAIECQR--LGVEVIAVDRYA 44 (391)
T ss_dssp TSTTCCEEEEESCS---H--HHHHHHHHHHT--TTCEEEEEESST
T ss_pred CCCCCCEEEEECCC---H--HHHHHHHHHHH--cCCEEEEEECCC
Confidence 45456799998543 2 34678999999 999998887543
No 108
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=49.95 E-value=9.1 Score=35.22 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=27.4
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCC-----C-eEEEEEeCc
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHK-----N-YSITFVSTP 44 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~-----G-h~Vt~~~~~ 44 (493)
|..+++||.|+-.+..|. .+|..|.+ . | |+|+++..+
T Consensus 4 m~~~~m~I~iiG~G~mG~-----~~a~~L~~--~~~~~~g~~~V~~~~r~ 46 (317)
T 2qyt_A 4 MNQQPIKIAVFGLGGVGG-----YYGAMLAL--RAAATDGLLEVSWIARG 46 (317)
T ss_dssp ---CCEEEEEECCSHHHH-----HHHHHHHH--HHHHTTSSEEEEEECCH
T ss_pred CCCCCCEEEEECcCHHHH-----HHHHHHHh--CccccCCCCCEEEEEcH
Confidence 555667999998888885 55778887 7 9 999999753
No 109
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=47.59 E-value=22 Score=30.58 Aligned_cols=49 Identities=8% Similarity=0.003 Sum_probs=36.0
Q ss_pred CCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 2 AQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 2 ~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
...++||++.-.++.+=+ -...|.+.|++. +|++|.++.++.....+..
T Consensus 16 ~l~~k~IllgvTGsiaa~-k~~~lv~~L~~~-~g~~V~vv~T~~A~~fi~~ 64 (206)
T 1qzu_A 16 MERKFHVLVGVTGSVAAL-KLPLLVSKLLDI-PGLEVAVVTTERAKHFYSP 64 (206)
T ss_dssp CCSSEEEEEEECSSGGGG-THHHHHHHHC----CEEEEEEECTGGGGSSCG
T ss_pred ccCCCEEEEEEeChHHHH-HHHHHHHHHhcc-cCCEEEEEECHhHHHHhCH
Confidence 334678888888887744 568999999652 4999999999877766654
No 110
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=47.28 E-value=1.2e+02 Score=26.14 Aligned_cols=102 Identities=11% Similarity=-0.030 Sum_probs=57.4
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc-c---hhhhhccCCCCCCceEEeccCCCCCCCCCCCCC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL-N---IKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSE 79 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~-~---~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~ 79 (493)
.++||+++..++ || -+.+|.+++.+..-+++|..+.+.. . .+..++ .++.+..++.. ..
T Consensus 7 ~~~ri~vl~SG~-gs--nl~all~~~~~~~~~~~I~~Vis~~~~a~~l~~A~~-----~gIp~~~~~~~--------~~- 69 (215)
T 3kcq_A 7 KELRVGVLISGR-GS--NLEALAKAFSTEESSVVISCVISNNAEARGLLIAQS-----YGIPTFVVKRK--------PL- 69 (215)
T ss_dssp CCEEEEEEESSC-CH--HHHHHHHHTCCC-CSEEEEEEEESCTTCTHHHHHHH-----TTCCEEECCBT--------TB-
T ss_pred CCCEEEEEEECC-cH--HHHHHHHHHHcCCCCcEEEEEEeCCcchHHHHHHHH-----cCCCEEEeCcc--------cC-
Confidence 467898877655 43 2556666665511137877776532 1 223444 45566554410 00
Q ss_pred CCCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcch-hhHHHHHHcCCceEEEech
Q 011106 80 NCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFG-WTCGVAKELNVFHAIFSGS 146 (493)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~-~~~~~A~~lgiP~i~~~~~ 146 (493)
. .+++.+.+++.. ||+||.-.+.. -...+-..+.-.++-+.++
T Consensus 70 -----~--------------~~~~~~~L~~~~-----~Dlivlagy~~IL~~~~l~~~~~~~iNiHpS 113 (215)
T 3kcq_A 70 -----D--------------IEHISTVLREHD-----VDLVCLAGFMSILPEKFVTDWHHKIINIHPS 113 (215)
T ss_dssp -----C--------------HHHHHHHHHHTT-----CSEEEESSCCSCCCHHHHHHTTTSEEEEESS
T ss_pred -----C--------------hHHHHHHHHHhC-----CCEEEEeCCceEeCHHHHhhccCCeEEECcc
Confidence 0 046677788888 99999886643 3334445555566666554
No 111
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=46.88 E-value=1.5e+02 Score=25.96 Aligned_cols=34 Identities=9% Similarity=-0.044 Sum_probs=27.5
Q ss_pred EEEEEC-CCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 011106 7 NIVMFP-FMAQGHIIPFLALALHIEQRHKNYSITFVS 42 (493)
Q Consensus 7 ~il~~~-~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~ 42 (493)
.|++.. -..-|=..-.+.|++.|.+ +|++|.++=
T Consensus 23 ~i~ItgT~t~vGKT~vs~gL~~~L~~--~G~~V~~fK 57 (242)
T 3qxc_A 23 MLFISATNTNAGKTTCARLLAQYCNA--CGVKTILLK 57 (242)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHh--CCCceEEEe
Confidence 344444 3688889999999999999 999999984
No 112
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=46.83 E-value=46 Score=32.89 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEE
Q 011106 101 PAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIF 143 (493)
Q Consensus 101 ~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~ 143 (493)
..+.+.+++.+ ||++|... ....+|+.+|||++.+
T Consensus 407 ~el~~~i~~~~-----pDL~ig~~---~~~~ia~k~gIP~~~~ 441 (492)
T 3u7q_A 407 YEFEEFVKRIK-----PDLIGSGI---KEKFIFQKMGIPFREM 441 (492)
T ss_dssp HHHHHHHHHHC-----CSEEEECH---HHHHHHHHTTCCEEES
T ss_pred HHHHHHHHhcC-----CcEEEeCc---chhHHHHHcCCCEEec
Confidence 35667777878 99999974 4678999999999964
No 113
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=46.70 E-value=46 Score=32.32 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=32.1
Q ss_pred EEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchh
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIK 48 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~ 48 (493)
=+++..-|+.|=..-++.+|...... .|..|.|++.+...+
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~~~~ 242 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEMPAA 242 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSSCHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCCCHH
Confidence 35566678999999999999988751 488999998875544
No 114
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=46.69 E-value=22 Score=30.78 Aligned_cols=106 Identities=8% Similarity=0.005 Sum_probs=55.5
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccch---hhhhccCCCCCCceEEeccCCCCCCCCCCCCCC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNI---KKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSEN 80 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~---~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~ 80 (493)
+++||+++..++.+- +.+|.+++.. ..+++|..+.+.... +..++ .++.+..++.. .+
T Consensus 11 ~~~ri~vl~SG~gsn---l~all~~~~~-~~~~eI~~Vis~~~a~~~~~A~~-----~gIp~~~~~~~--------~~-- 71 (215)
T 3da8_A 11 APARLVVLASGTGSL---LRSLLDAAVG-DYPARVVAVGVDRECRAAEIAAE-----ASVPVFTVRLA--------DH-- 71 (215)
T ss_dssp SSEEEEEEESSCCHH---HHHHHHHSST-TCSEEEEEEEESSCCHHHHHHHH-----TTCCEEECCGG--------GS--
T ss_pred CCcEEEEEEeCChHH---HHHHHHHHhc-cCCCeEEEEEeCCchHHHHHHHH-----cCCCEEEeCcc--------cc--
Confidence 467999888766443 3344444432 145787766554332 23444 45565554310 00
Q ss_pred CCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcch-hhHHHHHHcCCceEEEech
Q 011106 81 CDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFG-WTCGVAKELNVFHAIFSGS 146 (493)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~-~~~~~A~~lgiP~i~~~~~ 146 (493)
.. . +...+++.+.+++.. ||+||.-.|.. -...+-..+.-.++-+.++
T Consensus 72 ----~~---r------~~~d~~~~~~l~~~~-----~Dlivlagy~~iL~~~~l~~~~~~~iNiHpS 120 (215)
T 3da8_A 72 ----PS---R------DAWDVAITAATAAHE-----PDLVVSAGFMRILGPQFLSRFYGRTLNTHPA 120 (215)
T ss_dssp ----SS---H------HHHHHHHHHHHHTTC-----CSEEEEEECCSCCCHHHHHHHTTTEEEEESS
T ss_pred ----cc---h------hhhhHHHHHHHHhhC-----CCEEEEcCchhhCCHHHHhhccCCeEEeCcc
Confidence 00 0 112346677778877 99999865532 2333444444455666544
No 115
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=46.49 E-value=33 Score=33.82 Aligned_cols=35 Identities=11% Similarity=-0.101 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEE
Q 011106 101 PAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIF 143 (493)
Q Consensus 101 ~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~ 143 (493)
..+.+.+++.+ ||++|... ....+|+++|||++.+
T Consensus 391 ~el~~~i~~~~-----pDL~ig~~---~~~~~a~k~gIP~~~~ 425 (483)
T 3pdi_A 391 RVLLKTVDEYQ-----ADILIAGG---RNMYTALKGRVPFLDI 425 (483)
T ss_dssp HHHHHHHHHTT-----CSEEECCG---GGHHHHHHTTCCBCCC
T ss_pred HHHHHHHHhcC-----CCEEEECC---chhHHHHHcCCCEEEe
Confidence 35666777777 99999975 3668899999999765
No 116
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=46.21 E-value=36 Score=29.66 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=44.6
Q ss_pred cCceeeccCchhHHHHHHhCCcEecccccc-c----------------------chhhHHHHhhhhceeEEeecCCCCcc
Q 011106 364 TCAFLSHCGWNSVLEALIHGVPIIGWPMAA-E----------------------QFFNAKFLEQEMGVCVEVARGKTCEV 420 (493)
Q Consensus 364 v~~~I~HgG~gs~~eal~~GvP~l~~P~~~-D----------------------Q~~na~~v~~~lG~G~~~~~~~~~~~ 420 (493)
.+.+|+.||........ ..+|+|-++..+ | ....+..+.+.||+-+.... --
T Consensus 64 ~dVIISRGgta~~Lr~~-~~iPVV~I~vs~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~~----~~ 138 (225)
T 2pju_A 64 CDAIIAAGSNGAYLKSR-LSVPVILIKPSGYDVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRS----YI 138 (225)
T ss_dssp CSEEEEEHHHHHHHHTT-CSSCEEEECCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEE----ES
T ss_pred CeEEEeCChHHHHHHhh-CCCCEEEecCCHHHHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEEE----eC
Confidence 44599999999988875 589999999743 2 23334455555555555442 35
Q ss_pred CHHHHHHHHHHHhcC
Q 011106 421 KHEDVVAKIELVMNE 435 (493)
Q Consensus 421 ~~~~l~~ai~~~l~~ 435 (493)
+++++...|+++..+
T Consensus 139 ~~ee~~~~i~~l~~~ 153 (225)
T 2pju_A 139 TEEDARGQINELKAN 153 (225)
T ss_dssp SHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC
Confidence 667777777777654
No 117
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=46.08 E-value=23 Score=31.60 Aligned_cols=38 Identities=13% Similarity=0.109 Sum_probs=34.8
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
++.+|++.+.++-.|-....-++..|.. +|++|.++..
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~--~G~~Vi~LG~ 159 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRA--NGYNVVDLGR 159 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHH--TTCEEEEEEE
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHH--CCCEEEECCC
Confidence 4679999999999999999999999999 9999998864
No 118
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=45.62 E-value=98 Score=26.50 Aligned_cols=105 Identities=10% Similarity=0.054 Sum_probs=58.3
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc----chhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCC
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL----NIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENC 81 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~----~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~ 81 (493)
+||+++..+..+ -+.+|.+++.+..-+|+|..+.+.. ..+..++ .++.+..++.. .+.
T Consensus 1 ~ri~vl~Sg~gs---nl~ali~~~~~~~~~~~i~~Vis~~~~~~~~~~A~~-----~gIp~~~~~~~----~~~------ 62 (212)
T 1jkx_A 1 MNIVVLISGNGS---NLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQ-----AGIATHTLIAS----AFD------ 62 (212)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHH-----TTCEEEECCGG----GCS------
T ss_pred CEEEEEEECCcH---HHHHHHHHHHcCCCCceEEEEEeCCCchHHHHHHHH-----cCCcEEEeCcc----ccc------
Confidence 367777655443 3677788887722268876665432 2233444 56666654410 000
Q ss_pred CCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcch-hhHHHHHHcCCceEEEech
Q 011106 82 DVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFG-WTCGVAKELNVFHAIFSGS 146 (493)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~-~~~~~A~~lgiP~i~~~~~ 146 (493)
. -+...+.+.+.+++.. ||+||+-.+.. -...+-..+...++-+.++
T Consensus 63 ----~---------r~~~~~~~~~~l~~~~-----~Dliv~agy~~il~~~~l~~~~~~~iNiHpS 110 (212)
T 1jkx_A 63 ----S---------REAYDRELIHEIDMYA-----PDVVVLAGFMRILSPAFVSHYAGRLLNIHPS 110 (212)
T ss_dssp ----S---------HHHHHHHHHHHHGGGC-----CSEEEESSCCSCCCHHHHHHTTTSEEEEESS
T ss_pred ----c---------hhhccHHHHHHHHhcC-----CCEEEEeChhhhCCHHHHhhccCCEEEEccC
Confidence 0 0122245666777777 99999886642 3344445555666776554
No 119
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=45.35 E-value=71 Score=28.49 Aligned_cols=38 Identities=8% Similarity=0.105 Sum_probs=26.8
Q ss_pred CCCCCcEEEEECCCC----cccHHHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 1 MAQSKENIVMFPFMA----QGHIIPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 1 m~~~~~~il~~~~~~----~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
|...+.|.++++.++ .| .++|+.|.+ +|++|.++.-..
T Consensus 21 M~~l~~k~vlVTGasg~~GIG-----~~ia~~l~~--~G~~V~~~~r~~ 62 (280)
T 3nrc_A 21 MGFLAGKKILITGLLSNKSIA-----YGIAKAMHR--EGAELAFTYVGQ 62 (280)
T ss_dssp -CTTTTCEEEECCCCSTTCHH-----HHHHHHHHH--TTCEEEEEECTT
T ss_pred ccccCCCEEEEECCCCCCCHH-----HHHHHHHHH--cCCEEEEeeCch
Confidence 443345778888643 44 579999999 999998886543
No 120
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=45.00 E-value=45 Score=32.32 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=25.4
Q ss_pred CCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 3 QSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 3 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
|+.+||+++- .|. -.+.+++++++ .|+++.++.+.
T Consensus 4 m~~~kiLI~g---~g~--~a~~i~~aa~~--~G~~~v~v~~~ 38 (446)
T 3ouz_A 4 MEIKSILIAN---RGE--IALRALRTIKE--MGKKAICVYSE 38 (446)
T ss_dssp TCCCEEEECC---CHH--HHHHHHHHHHH--TTCEEEEEEEG
T ss_pred cccceEEEEC---CCH--HHHHHHHHHHH--cCCEEEEEEcC
Confidence 4556888854 332 45789999999 99998888543
No 121
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=44.74 E-value=16 Score=32.88 Aligned_cols=53 Identities=15% Similarity=0.235 Sum_probs=38.5
Q ss_pred cCceeeccCchhHHHHHHh------CCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 364 TCAFLSHCGWNSVLEALIH------GVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 364 v~~~I~HgG~gs~~eal~~------GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
.+++|.=||=||+.+++.. ++|++.+|.. .+|. + ..+.++++.++++++++..
T Consensus 36 ~D~vv~lGGDGT~l~aa~~~~~~~~~~PilGIn~G------------~lgf---l-----~~~~~~~~~~~l~~l~~g~ 94 (272)
T 2i2c_A 36 PEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTG------------HLGF---Y-----ADWRPAEADKLVKLLAKGE 94 (272)
T ss_dssp CSEEEEEESHHHHHHHHHHTGGGTTTCEEEEEESS------------SCCS---S-----CCBCGGGHHHHHHHHHTTC
T ss_pred CCEEEEEcCcHHHHHHHHHHhhcCCCCCEEEEeCC------------CCCc---C-----CcCCHHHHHHHHHHHHcCC
Confidence 4569999999999999775 8899999751 1131 1 2345778888888888754
No 122
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=43.74 E-value=98 Score=23.66 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=24.5
Q ss_pred CcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEE
Q 011106 278 NSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVV 314 (493)
Q Consensus 278 ~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~ 314 (493)
..+|+|+.||........+..+.+.++.....|.+.+
T Consensus 6 ~alllv~HGS~~~~~~~~~~~l~~~l~~~~~~V~~a~ 42 (126)
T 3lyh_A 6 HQIILLAHGSSDARWCETFEKLAEPTVESIENAAIAY 42 (126)
T ss_dssp EEEEEEECCCSCHHHHHHHHHHHHHHHHHSTTCEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHHhhcCCEEEEE
Confidence 5699999999743223456677777776545555554
No 123
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=43.08 E-value=1.4e+02 Score=28.91 Aligned_cols=150 Identities=15% Similarity=0.127 Sum_probs=76.9
Q ss_pred CcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHH
Q 011106 278 NSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLE 357 (493)
Q Consensus 278 ~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~ 357 (493)
+.++.|..|... ...+..|.+.+..+.++.... .+.+..-.. ..++.+..--.+..
T Consensus 13 ~~vlVvGgG~va-------~~k~~~L~~~ga~V~vi~~~~---------------~~~~~~l~~--~~~i~~~~~~~~~~ 68 (457)
T 1pjq_A 13 RDCLIVGGGDVA-------ERKARLLLEAGARLTVNALTF---------------IPQFTVWAN--EGMLTLVEGPFDET 68 (457)
T ss_dssp CEEEEECCSHHH-------HHHHHHHHHTTBEEEEEESSC---------------CHHHHHHHT--TTSCEEEESSCCGG
T ss_pred CEEEEECCCHHH-------HHHHHHHHhCcCEEEEEcCCC---------------CHHHHHHHh--cCCEEEEECCCCcc
Confidence 558888777543 234556667888877766421 122222111 23443332222334
Q ss_pred hhccCCcCceeeccCchh-----HHHHHHhCCcE--ecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHH
Q 011106 358 VLSHRATCAFLSHCGWNS-----VLEALIHGVPI--IGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIE 430 (493)
Q Consensus 358 lL~~~~v~~~I~HgG~gs-----~~eal~~GvP~--l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~ 430 (493)
.|..+++ +|.--|.-. ..+|-..|+|+ +--|-..|...-| .+.+. ++=+.+..+.-...-...|++.|.
T Consensus 69 ~l~~~~l--Vi~at~~~~~n~~i~~~a~~~~i~vn~~d~~e~~~~~~pa-~~~~~-~l~iaIsT~Gksp~la~~ir~~ie 144 (457)
T 1pjq_A 69 LLDSCWL--AIAATDDDTVNQRVSDAAESRRIFCNVVDAPKAASFIMPS-IIDRS-PLMVAVSSGGTSPVLARLLREKLE 144 (457)
T ss_dssp GGTTCSE--EEECCSCHHHHHHHHHHHHHTTCEEEETTCTTSSSEECCE-EEEET-TEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCCccE--EEEcCCCHHHHHHHHHHHHHcCCEEEECCCcccCceEeee-EEEeC-CeEEEEECCCCChHHHHHHHHHHH
Confidence 4555554 777666554 33456678886 3333333322211 01112 333333331111223678888888
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHHHhh
Q 011106 431 LVMNETDKGKEIRRKVSEVREMIKNAM 457 (493)
Q Consensus 431 ~~l~~~~~~~~~~~~a~~l~~~~~~~~ 457 (493)
+.|.+. .| .+.+.+.++++.+++..
T Consensus 145 ~~l~~~-~~-~~~~~~~~~R~~~~~~~ 169 (457)
T 1pjq_A 145 SLLPQH-LG-QVARYAGQLRARVKKQF 169 (457)
T ss_dssp HHSCTT-HH-HHHHHHHHHHHHHHHHC
T ss_pred Hhcchh-HH-HHHHHHHHHHHHHHhhC
Confidence 888654 33 67777777777777544
No 124
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=41.19 E-value=1e+02 Score=28.70 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=31.2
Q ss_pred cEEEEECCCCcc--c--HHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 6 ENIVMFPFMAQG--H--IIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 6 ~~il~~~~~~~G--H--~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
+-|++.|..+.. . ..-+.+|++.|.+ +|++|.++.++...+..++
T Consensus 186 ~~i~i~pga~~~~k~wp~~~~~~l~~~l~~--~g~~vvl~g~~~e~~~~~~ 234 (349)
T 3tov_A 186 ILIGFNIGSAVPEKRWPAERFAHVADYFGR--LGYKTVFFGGPMDLEMVQP 234 (349)
T ss_dssp CEEEEECCCSSGGGCCCHHHHHHHHHHHHH--HTCEEEECCCTTTHHHHHH
T ss_pred CEEEEeCCCCCccCCCCHHHHHHHHHHHHh--CCCeEEEEeCcchHHHHHH
Confidence 456676654332 1 3458999999999 8999998877766555443
No 125
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=41.05 E-value=45 Score=32.44 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=33.7
Q ss_pred EEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchh
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIK 48 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~ 48 (493)
-+++..-|+.|=..-++.+|..... +|..|.|++.+...+
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~--~g~~vl~fSlEms~~ 238 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSD--NDDVVNLHSLEMGKK 238 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHH--TTCEEEEECSSSCTT
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHH--cCCEEEEEECCCCHH
Confidence 3566668999999999999999999 899999999875443
No 126
>2qs7_A Uncharacterized protein; putative oxidoreductase of the DSRE/DSRF-like family, struct genomics, joint center for structural genomics; HET: MSE EPE; 2.09A {Sulfolobus solfataricus P2}
Probab=39.96 E-value=39 Score=26.94 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=34.0
Q ss_pred EEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 7 NIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 7 ~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
-++++..+..-.+.+.+.+|...++ .|++|+++.+..-...+.+
T Consensus 10 l~II~~sg~~d~~~~a~~lA~~Aaa--~g~eV~iF~t~~gv~~l~k 53 (144)
T 2qs7_A 10 LSIIVFSGTIDKLMPVGILTSGAAA--SGYEVNLFFTFWGLQAITK 53 (144)
T ss_dssp EEEEECCCSHHHHHHHHHHHHHHHH--TTCEEEEEECHHHHHHTBH
T ss_pred EEEEEEcCCHHHHHHHHHHHHHHHH--cCCcEEEEEehHHHHHHhc
Confidence 3444445678888999999999999 9999999988766655554
No 127
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=39.70 E-value=31 Score=29.28 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=24.7
Q ss_pred CCcCceeeccCchhHHHHHHhCCcEecccccc
Q 011106 362 RATCAFLSHCGWNSVLEALIHGVPIIGWPMAA 393 (493)
Q Consensus 362 ~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~ 393 (493)
...+.+|+.||........ .++|+|-+|..+
T Consensus 50 ~~~dVIISRGgta~~lr~~-~~iPVV~I~~s~ 80 (196)
T 2q5c_A 50 DEVDAIISRGATSDYIKKS-VSIPSISIKVTR 80 (196)
T ss_dssp TTCSEEEEEHHHHHHHHTT-CSSCEEEECCCH
T ss_pred CCCeEEEECChHHHHHHHh-CCCCEEEEcCCH
Confidence 3445599999999988875 589999999753
No 128
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=39.54 E-value=51 Score=29.12 Aligned_cols=38 Identities=11% Similarity=0.105 Sum_probs=28.1
Q ss_pred CcEEEEECCCCc----------c-cHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 5 KENIVMFPFMAQ----------G-HIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 5 ~~~il~~~~~~~----------G-H~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
++||+++..... | ...=++.-.+.|.+ .|++|+++++.
T Consensus 9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~--aG~~V~~aSp~ 57 (247)
T 3n7t_A 9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTA--AGFEVDVASET 57 (247)
T ss_dssp CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 468888876632 1 14447777889999 99999999854
No 129
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=39.47 E-value=38 Score=29.21 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=35.0
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
+.+|++.+.++-.|-....-++..|.. +|++|..+...
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~--~G~~Vi~LG~~ 129 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGA--NGFQIVDLGVD 129 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHH--TSCEEEECCSS
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHH--CCCeEEEcCCC
Confidence 569999999999999999999999999 99999998754
No 130
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=39.29 E-value=1.8e+02 Score=28.89 Aligned_cols=35 Identities=9% Similarity=0.061 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHc-------CCceEEE
Q 011106 101 PAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKEL-------NVFHAIF 143 (493)
Q Consensus 101 ~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~l-------giP~i~~ 143 (493)
..+++.+++.+ ||++|.... +..+|+.+ |||++.+
T Consensus 428 ~~l~~~i~~~~-----pDLlig~s~---~k~~a~~~~~~~~~~giP~iri 469 (523)
T 3u7q_B 428 WHLRSLVFTDK-----PDFMIGNSY---GKFIQRDTLHKGKEFEVPLIRI 469 (523)
T ss_dssp HHHHHHHHHTC-----CSEEEECTT---HHHHHHHHHHHCGGGCCCEEEC
T ss_pred HHHHHHHHhcC-----CCEEEECcc---HHHHHHHhhcccccCCCceEEe
Confidence 35666777777 999999974 34566666 9999986
No 131
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=38.78 E-value=19 Score=32.12 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=38.7
Q ss_pred cCceeeccCchhHHHHHHh---CCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 364 TCAFLSHCGWNSVLEALIH---GVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 364 v~~~I~HgG~gs~~eal~~---GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
.+++|+=||=||+.+++.. ++|++.++.. .+|.- ..+.++++.++++++++..
T Consensus 42 ~D~vv~~GGDGTll~~a~~~~~~~PilGIn~G------------~~Gfl--------~~~~~~~~~~al~~i~~g~ 97 (258)
T 1yt5_A 42 ADLIVVVGGDGTVLKAAKKAADGTPMVGFKAG------------RLGFL--------TSYTLDEIDRFLEDLRNWN 97 (258)
T ss_dssp CSEEEEEECHHHHHHHHTTBCTTCEEEEEESS------------SCCSS--------CCBCGGGHHHHHHHHHTTC
T ss_pred CCEEEEEeCcHHHHHHHHHhCCCCCEEEEECC------------CCCcc--------CcCCHHHHHHHHHHHHcCC
Confidence 3459999999999999887 7888888631 11221 2346788889998888765
No 132
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=38.63 E-value=17 Score=34.33 Aligned_cols=37 Identities=27% Similarity=0.264 Sum_probs=29.3
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
|+++++||.++-.+..|. .+|..|.+ .||+|+++...
T Consensus 25 m~~~~mkI~VIGaG~mG~-----alA~~La~--~G~~V~l~~r~ 61 (356)
T 3k96_A 25 MEPFKHPIAILGAGSWGT-----ALALVLAR--KGQKVRLWSYE 61 (356)
T ss_dssp --CCCSCEEEECCSHHHH-----HHHHHHHT--TTCCEEEECSC
T ss_pred ccccCCeEEEECccHHHH-----HHHHHHHH--CCCeEEEEeCC
Confidence 555567999999888775 68899999 99999999754
No 133
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=38.08 E-value=63 Score=25.69 Aligned_cols=97 Identities=7% Similarity=0.031 Sum_probs=57.8
Q ss_pred EEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCCCCCCceEEeccCCCCCCCCCCCCCCCCCCChhh
Q 011106 9 VMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSENCDVLPYNL 88 (493)
Q Consensus 9 l~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~~~~~~~~~~ 88 (493)
+|++... .+=.-++.+|+.|.+ .||++. .| .-....+++. ++....+... +++.. .
T Consensus 27 vliSv~d-~dK~~l~~~a~~l~~--lGf~i~-AT-~GTa~~L~~~-----Gi~v~~v~k~------~egg~-~------- 82 (143)
T 2yvq_A 27 ILIGIQQ-SFRPRFLGVAEQLHN--EGFKLF-AT-EATSDWLNAN-----NVPATPVAWP------SQEGQ-N------- 82 (143)
T ss_dssp EEEECCG-GGHHHHHHHHHHHHT--TTCEEE-EE-HHHHHHHHHT-----TCCCEEECCG------GGC-----------
T ss_pred EEEEecc-cchHHHHHHHHHHHH--CCCEEE-EC-chHHHHHHHc-----CCeEEEEEec------cCCCc-c-------
Confidence 5555433 456678999999999 999743 33 3445677774 4444444421 11100 0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcc--------hhhHHHHHHcCCceEEE
Q 011106 89 VIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFF--------GWTCGVAKELNVFHAIF 143 (493)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~--------~~~~~~A~~lgiP~i~~ 143 (493)
...+.+.+.+++-. .|+||...-. ......|-.++||+++-
T Consensus 83 ---------~~~~~i~d~i~~g~-----i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T~ 131 (143)
T 2yvq_A 83 ---------PSLSSIRKLIRDGS-----IDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLTN 131 (143)
T ss_dssp -----------CBCHHHHHHTTS-----CCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEECS
T ss_pred ---------cccccHHHHHHCCC-----ceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEcC
Confidence 00034566666666 9999985432 23456889999998873
No 134
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=38.00 E-value=93 Score=27.26 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHhhcCCCCCcEEEEC
Q 011106 99 LKPAFKEVISSLINQGRPPLCIIAD 123 (493)
Q Consensus 99 ~~~~l~~~l~~~~~~~~~pDlvI~D 123 (493)
....+.++|++.+ ||+|++-
T Consensus 85 ~~~~l~~~ir~~~-----PdvV~t~ 104 (242)
T 2ixd_A 85 YIREIVKVIRTYK-----PKLVFAP 104 (242)
T ss_dssp HHHHHHHHHHHHC-----CSEEEEE
T ss_pred HHHHHHHHHHHcC-----CCEEEEC
Confidence 4567888889988 9999974
No 135
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=37.97 E-value=54 Score=30.74 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=23.6
Q ss_pred cEEEEeccCCcCCCHHHH--HHHHHHHHhCCCcEEEEEcCC
Q 011106 279 SVLYISFGSMNTISASQM--MQLAMALEASGKNFIWVVRPP 317 (493)
Q Consensus 279 ~~V~vs~GS~~~~~~~~~--~~i~~al~~~~~~vi~~~~~~ 317 (493)
.+|+.+.||.. ..+ ..++++|.+.+++|+|+...+
T Consensus 4 ~i~i~~GGTgG----Hi~palala~~L~~~g~~V~~vg~~~ 40 (365)
T 3s2u_A 4 NVLIMAGGTGG----HVFPALACAREFQARGYAVHWLGTPR 40 (365)
T ss_dssp EEEEECCSSHH----HHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred cEEEEcCCCHH----HHHHHHHHHHHHHhCCCEEEEEECCc
Confidence 36666666642 332 347888989999999987543
No 136
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=37.09 E-value=2.1e+02 Score=25.32 Aligned_cols=29 Identities=17% Similarity=0.081 Sum_probs=19.7
Q ss_pred CcEEEECCcch----hhHHHHHHcCCceEEEec
Q 011106 117 PLCIIADIFFG----WTCGVAKELNVFHAIFSG 145 (493)
Q Consensus 117 pDlvI~D~~~~----~~~~~A~~lgiP~i~~~~ 145 (493)
+|.||...... .....+...|||+|.+..
T Consensus 62 vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~ 94 (305)
T 3g1w_A 62 PAGIAISAIDPVELTDTINKAVDAGIPIVLFDS 94 (305)
T ss_dssp CSEEEECCSSTTTTHHHHHHHHHTTCCEEEESS
T ss_pred CCEEEEcCCCHHHHHHHHHHHHHCCCcEEEECC
Confidence 99998765433 233455667999998843
No 137
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=36.76 E-value=56 Score=28.96 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=23.6
Q ss_pred CCCcEEE-ECCcc-hhhHHHHHHcCCceEEEech
Q 011106 115 RPPLCII-ADIFF-GWTCGVAKELNVFHAIFSGS 146 (493)
Q Consensus 115 ~~pDlvI-~D~~~-~~~~~~A~~lgiP~i~~~~~ 146 (493)
..||+|| .|+.. .-+..=|..+|||.|.+.-+
T Consensus 157 ~~Pdll~V~Dp~~e~~Ai~EA~~l~IPvIaivDT 190 (256)
T 2vqe_B 157 RLPDAIFVVDPTKEAIAVREARKLFIPVIALADT 190 (256)
T ss_dssp SCCSEEEESCTTTTHHHHHHHHHTTCCCEECCCT
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecC
Confidence 4599886 56543 35677889999999998544
No 138
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=36.62 E-value=1.2e+02 Score=24.27 Aligned_cols=37 Identities=11% Similarity=0.025 Sum_probs=27.2
Q ss_pred cEEEEECCCCcc---cHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 6 ENIVMFPFMAQG---HIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 6 ~~il~~~~~~~G---H~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
..++++++++.| .-.-+..+.++|.+ .++++.+++..
T Consensus 21 ~~~vlv~~Gs~~~~~~~~~~~~~~~al~~--~~~~~~~~~g~ 60 (170)
T 2o6l_A 21 NGVVVFSLGSMVSNMTEERANVIASALAQ--IPQKVLWRFDG 60 (170)
T ss_dssp TCEEEEECCSCCTTCCHHHHHHHHHHHTT--SSSEEEEECCS
T ss_pred CCEEEEECCCCcccCCHHHHHHHHHHHHh--CCCeEEEEECC
Confidence 357788888886 44556678888877 78888888754
No 139
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=36.44 E-value=52 Score=25.76 Aligned_cols=42 Identities=5% Similarity=-0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCCCcEEEECCcch--hhHHHHHHc-------CCceEEEechh
Q 011106 101 PAFKEVISSLINQGRPPLCIIADIFFG--WTCGVAKEL-------NVFHAIFSGSG 147 (493)
Q Consensus 101 ~~l~~~l~~~~~~~~~pDlvI~D~~~~--~~~~~A~~l-------giP~i~~~~~~ 147 (493)
.+-.+.+++.. ||+||.|...+ -|..+++.+ .+|++.++...
T Consensus 47 ~~al~~~~~~~-----~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~ 97 (134)
T 3to5_A 47 LTALPMLKKGD-----FDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEA 97 (134)
T ss_dssp HHHHHHHHHHC-----CSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSC
T ss_pred HHHHHHHHhCC-----CCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCC
No 140
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=36.19 E-value=30 Score=30.33 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=30.3
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
|...++||.|+-.+..|- .||..|.+ +||+|+.+..+
T Consensus 2 ~~~~~mkI~IIG~G~~G~-----sLA~~L~~--~G~~V~~~~~~ 38 (232)
T 3dfu_A 2 MQAPRLRVGIFDDGSSTV-----NMAEKLDS--VGHYVTVLHAP 38 (232)
T ss_dssp -CCCCCEEEEECCSCCCS-----CHHHHHHH--TTCEEEECSSG
T ss_pred CCCCCcEEEEEeeCHHHH-----HHHHHHHH--CCCEEEEecCH
Confidence 555678999999998885 68999999 99999988654
No 141
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=36.07 E-value=2.5e+02 Score=25.48 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=21.0
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCC--eEEEEEeC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKN--YSITFVST 43 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~G--h~Vt~~~~ 43 (493)
+.++|+++- +.|.+= .+|++.|.+ +| |+|+.+..
T Consensus 23 ~~~~vlVtG--atG~iG--~~l~~~L~~--~g~~~~v~~~~~ 58 (346)
T 4egb_A 23 NAMNILVTG--GAGFIG--SNFVHYMLQ--SYETYKIINFDA 58 (346)
T ss_dssp -CEEEEEET--TTSHHH--HHHHHHHHH--HCTTEEEEEEEC
T ss_pred CCCeEEEEC--CccHHH--HHHHHHHHh--hCCCcEEEEEec
Confidence 345666553 444332 478899999 89 67766653
No 142
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=35.43 E-value=1.8e+02 Score=24.55 Aligned_cols=97 Identities=15% Similarity=0.034 Sum_probs=53.2
Q ss_pred hhhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCC
Q 011106 265 IKFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSK 344 (493)
Q Consensus 265 ~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 344 (493)
..++..+|-+. ....|+-| .........++....+-++|-++.... . . .. .
T Consensus 47 A~~lg~~LA~~---G~~vVsGg-----~~GiM~aa~~gAl~~GG~~iGVlP~e~-----------~-~-~~--------~ 97 (195)
T 1rcu_A 47 CLELGRTLAKK---GYLVFNGG-----RDGVMELVSQGVREAGGTVVGILPDEE-----------A-G-NP--------Y 97 (195)
T ss_dssp HHHHHHHHHHT---TCEEEECC-----SSHHHHHHHHHHHHTTCCEEEEESTTC-----------C-C-CT--------T
T ss_pred HHHHHHHHHHC---CCEEEeCC-----HHHHHHHHHHHHHHcCCcEEEEeCCcc-----------c-C-CC--------C
Confidence 34556666543 35666633 233445556666666667777764321 0 0 00 1
Q ss_pred CCeEEe--eccCh-HHhhccCCcCceeeccCchhHHH---HHHhCCcEeccc
Q 011106 345 RGLLMK--NWAPQ-LEVLSHRATCAFLSHCGWNSVLE---ALIHGVPIIGWP 390 (493)
Q Consensus 345 ~nv~~~--~~~pq-~~lL~~~~v~~~I~HgG~gs~~e---al~~GvP~l~~P 390 (493)
....+. ...++ ..++..-+-..++--||.||+-| ++.+++|+++++
T Consensus 98 ~~~~~~~~~~f~~Rk~~m~~~sda~IvlpGG~GTL~E~~eal~~~kPV~lln 149 (195)
T 1rcu_A 98 LSVAVKTGLDFQMRSFVLLRNADVVVSIGGEIGTAIEILGAYALGKPVILLR 149 (195)
T ss_dssp CSEEEECCCCHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHHTTCCEEEET
T ss_pred cceeeecCCCHHHHHHHHHHhCCEEEEecCCCcHHHHHHHHHhcCCCEEEEC
Confidence 123332 23342 34443333346777899997765 578999999996
No 143
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=34.95 E-value=1.5e+02 Score=25.35 Aligned_cols=103 Identities=13% Similarity=0.047 Sum_probs=0.0
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCC--CeEEEEEeCccch----hhhhccCCCCCCceEEeccCCCCCCCCCCCCC
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHK--NYSITFVSTPLNI----KKLKSSLPPNSSIDLHEIPFNSSSHGLPPNSE 79 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~--Gh~Vt~~~~~~~~----~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~~ 79 (493)
+||+++..+.. ..+.+|.+++.+ . +|+|..+.+.... +...+ .++.+..++
T Consensus 1 ~riaVl~SG~G---s~L~aLi~~~~~--~~~~~~I~~Vvs~~~~~~~~~~A~~-----~gIp~~~~~------------- 57 (209)
T 1meo_A 1 ARVAVLISGTG---SNLQALIDSTRE--PNSSAQIDIVISNKAAVAGLDKAER-----AGIPTRVIN------------- 57 (209)
T ss_dssp CEEEEEESSSC---TTHHHHHHHHHS--TTCSCEEEEEEESSTTCHHHHHHHH-----TTCCEEECC-------------
T ss_pred CeEEEEEECCc---hHHHHHHHHHhc--CCCCcEEEEEEeCCCChHHHHHHHH-----cCCCEEEEC-------------
Q ss_pred CCCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcch-hhHHHHHHcCCceEEEech
Q 011106 80 NCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFG-WTCGVAKELNVFHAIFSGS 146 (493)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~-~~~~~A~~lgiP~i~~~~~ 146 (493)
..-...-+...+.+.+.+++.. ||+||+-.|.. -...+-..+...++-+.++
T Consensus 58 ----------~~~~~~r~~~~~~~~~~l~~~~-----~Dliv~a~y~~il~~~~l~~~~~~~iNiHpS 110 (209)
T 1meo_A 58 ----------HKLYKNRVEFDSAIDLVLEEFS-----IDIVCLAGFMRILSGPFVQKWNGKMLNIHPS 110 (209)
T ss_dssp ----------GGGSSSHHHHHHHHHHHHHHTT-----CCEEEEESCCSCCCHHHHHHTTTSEEEEESS
T ss_pred ----------ccccCchhhhhHHHHHHHHhcC-----CCEEEEcchhhhCCHHHHhhhcCCEEEEccC
No 144
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=34.93 E-value=32 Score=31.94 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=31.8
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
.+||+++-.++.|- .+|..|.+ .||+|+++......+.+.+
T Consensus 3 ~mkI~IiGaG~~G~-----~~a~~L~~--~g~~V~~~~r~~~~~~~~~ 43 (335)
T 3ghy_A 3 LTRICIVGAGAVGG-----YLGARLAL--AGEAINVLARGATLQALQT 43 (335)
T ss_dssp CCCEEEESCCHHHH-----HHHHHHHH--TTCCEEEECCHHHHHHHHH
T ss_pred CCEEEEECcCHHHH-----HHHHHHHH--CCCEEEEEEChHHHHHHHH
Confidence 46899998888775 57899999 9999999986544445554
No 145
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=34.90 E-value=66 Score=25.32 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=30.8
Q ss_pred CCCCCcEEEEE-CCCCcccHHH--HHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 1 MAQSKENIVMF-PFMAQGHIIP--FLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 1 m~~~~~~il~~-~~~~~GH~~p--~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
|+..++|++++ ..+-+|+... .+.+|.++.+ .||+|.++-...-...+.+
T Consensus 1 ~~~~Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a--~~~~v~Vff~~DGV~~~~~ 53 (136)
T 2hy5_B 1 MSEVVKKFMYLNRKAPYGTIYAWEALEVVLIGAA--FDQDVCVLFLDDGVYQLTR 53 (136)
T ss_dssp ----CCEEEEEECSCTTTSSHHHHHHHHHHHHGG--GCCEEEEEECGGGGGGGBS
T ss_pred CccchhEEEEEEeCCCCCcHHHHHHHHHHHHHHh--CCCCEEEEEEhHHHHHHhc
Confidence 44333344444 4556665444 5777999988 8999999987765555544
No 146
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=34.88 E-value=1.2e+02 Score=26.28 Aligned_cols=39 Identities=8% Similarity=-0.055 Sum_probs=29.1
Q ss_pred cEEEEECCCCcccHHHHHHHH------HHHHhcCCC-eEEEEEeCccc
Q 011106 6 ENIVMFPFMAQGHIIPFLALA------LHIEQRHKN-YSITFVSTPLN 46 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA------~~L~~~~~G-h~Vt~~~~~~~ 46 (493)
++.+|++.|+.+.++.++.-+ +.|.+ .| .+|++.+....
T Consensus 28 ~~~VlVtgGS~~~~n~li~~vl~~~~l~~L~~--~~~~~vv~q~G~~~ 73 (224)
T 2jzc_A 28 EKALFVTCGATVPFPKLVSCVLSDEFCQELIQ--YGFVRLIIQFGRNY 73 (224)
T ss_dssp SCCEEEECCSCCSCHHHHHHHTSHHHHHHHHT--TTCCCEEECCCSSS
T ss_pred CCEEEEEcCCchHHHHHHHHHHHHHHHHHHhc--CCCeEEEEEECCCc
Confidence 456778888887788877665 88888 77 68888876543
No 147
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=34.74 E-value=1.8e+02 Score=23.52 Aligned_cols=139 Identities=13% Similarity=0.123 Sum_probs=72.4
Q ss_pred cEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHh
Q 011106 279 SVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEV 358 (493)
Q Consensus 279 ~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~l 358 (493)
+.|-|-+||.. +.....+....++..+.++-+.+.+-+ ..|+.+.+ |+.+.+
T Consensus 3 ~~V~Iimgs~S--D~~v~~~a~~~l~~~gi~~ev~V~saH------------R~p~~~~~-------------~~~~a~- 54 (159)
T 3rg8_A 3 PLVIILMGSSS--DMGHAEKIASELKTFGIEYAIRIGSAH------------KTAEHVVS-------------MLKEYE- 54 (159)
T ss_dssp CEEEEEESSGG--GHHHHHHHHHHHHHTTCEEEEEECCTT------------TCHHHHHH-------------HHHHHH-
T ss_pred CeEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEccc------------CCHHHHHH-------------HHHHhh-
Confidence 35666677665 566777888888888887766665432 14444322 111111
Q ss_pred hccCCcCceeeccCch----hHHHHHHhCCcEeccccccc---chhhHHHHhh--hhceeEEeecCCCCccCHHHHHHHH
Q 011106 359 LSHRATCAFLSHCGWN----SVLEALIHGVPIIGWPMAAE---QFFNAKFLEQ--EMGVCVEVARGKTCEVKHEDVVAKI 429 (493)
Q Consensus 359 L~~~~v~~~I~HgG~g----s~~eal~~GvP~l~~P~~~D---Q~~na~~v~~--~lG~G~~~~~~~~~~~~~~~l~~ai 429 (493)
..-..+.||.=+|.- ++..+ ..-+|+|.+|...- -.+ -.-+.+ . |+.+.-- +....+.-++..|
T Consensus 55 -~~~~~~ViIa~AG~aa~LpgvvA~-~t~~PVIgVP~~~~~l~G~d-LlS~vqmp~-GvpVatv---~~~~nAa~lA~~I 127 (159)
T 3rg8_A 55 -ALDRPKLYITIAGRSNALSGFVDG-FVKGATIACPPPSDSFAGAD-IYSSLRMPS-GISPALV---LEPKNAALLAARI 127 (159)
T ss_dssp -TSCSCEEEEEECCSSCCHHHHHHH-HSSSCEEECCCCCCGGGGTH-HHHHHCCCT-TCCCEEC---CSHHHHHHHHHHH
T ss_pred -hcCCCcEEEEECCchhhhHHHHHh-ccCCCEEEeeCCCCCCCCcc-HHHHHhCCC-CCceEEe---cCchHHHHHHHHH
Confidence 000123377766644 33333 35689999996431 111 111221 2 4433211 1334444444433
Q ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHhh
Q 011106 430 ELVMNETDKGKEIRRKVSEVREMIKNAM 457 (493)
Q Consensus 430 ~~~l~~~~~~~~~~~~a~~l~~~~~~~~ 457 (493)
. -+.|+ .++++.+.+++..++.+
T Consensus 128 l-~~~d~----~l~~kl~~~r~~~~~~v 150 (159)
T 3rg8_A 128 F-SLYDK----EIADSVKSYMESNAQKI 150 (159)
T ss_dssp H-TTTCH----HHHHHHHHHHHHHHHHH
T ss_pred H-hCCCH----HHHHHHHHHHHHHHHHH
Confidence 2 23455 78888888888776444
No 148
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=34.62 E-value=2.6e+02 Score=25.34 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=29.4
Q ss_pred cEEEEECCCCcc---c--HHHHHHHHHHHHhcCCCeEEEEEeCccchhhhh
Q 011106 6 ENIVMFPFMAQG---H--IIPFLALALHIEQRHKNYSITFVSTPLNIKKLK 51 (493)
Q Consensus 6 ~~il~~~~~~~G---H--~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~ 51 (493)
+.|++.|....+ . ..-+..|++.|.+ +|++|.++.++...+..+
T Consensus 181 ~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~--~~~~vvl~g~~~e~~~~~ 229 (348)
T 1psw_A 181 PMIGFCPGAEFGPAKRWPHYHYAELAKQLID--EGYQVVLFGSAKDHEAGN 229 (348)
T ss_dssp CEEEEECCCTTCGGGSCCHHHHHHHHHHHHH--TTCEEEECCCGGGHHHHH
T ss_pred cEEEEECCCCccccCCCCHHHHHHHHHHHHH--CCCeEEEEeChhhHHHHH
Confidence 456666644222 2 3368899999999 899999887765544433
No 149
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=34.55 E-value=47 Score=30.37 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=30.9
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
+||+++-.++.|- .+|..|.+ .||+|+++.-.. .+.+.+
T Consensus 3 mkI~IiGaGaiG~-----~~a~~L~~--~g~~V~~~~r~~-~~~i~~ 41 (312)
T 3hn2_A 3 LRIAIVGAGALGL-----YYGALLQR--SGEDVHFLLRRD-YEAIAG 41 (312)
T ss_dssp -CEEEECCSTTHH-----HHHHHHHH--TSCCEEEECSTT-HHHHHH
T ss_pred CEEEEECcCHHHH-----HHHHHHHH--CCCeEEEEEcCc-HHHHHh
Confidence 6899999999885 46889999 999999998655 455655
No 150
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=34.15 E-value=89 Score=19.99 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHH---HHHHhhccccccccCC
Q 011106 439 GKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFL---SAAISMKNKINGRVNN 491 (493)
Q Consensus 439 ~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~ 491 (493)
+-+|++|...++.++. .-||| ...+..+. ...++..+-..|.-||
T Consensus 4 waefkqrlaaiktrlq-------alggs-eaelaafekeiaafeselqaykgkgnp 51 (73)
T 2a3d_A 4 WAEFKQRLAAIKTRLQ-------ALGGS-EAELAAFEKEIAAFESELQAYKGKGNP 51 (73)
T ss_dssp HHHHHHHHHHHHHHHH-------HCSSG-GGTHHHHHHHHHHHHHHHHHSSSCCSS
T ss_pred HHHHHHHHHHHHHHHH-------HhcCc-HHHHHHHHHHHHHHHHHHHHhccCCCh
Confidence 4578999999999998 66774 44333333 3334444445555544
No 151
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=33.89 E-value=1.9e+02 Score=28.67 Aligned_cols=33 Identities=15% Similarity=0.030 Sum_probs=27.9
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
.+||.|+-.++.| |-.+|+.|.+ +|++|+..=.
T Consensus 19 ~~~i~~iGiGg~G----ms~lA~~l~~--~G~~V~~sD~ 51 (524)
T 3hn7_A 19 GMHIHILGICGTF----MGSLALLARA--LGHTVTGSDA 51 (524)
T ss_dssp CCEEEEETTTSHH----HHHHHHHHHH--TTCEEEEEES
T ss_pred CCEEEEEEecHhh----HHHHHHHHHh--CCCEEEEECC
Confidence 4689999998877 6679999999 9999998743
No 152
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=33.75 E-value=57 Score=30.28 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEcCC
Q 011106 292 SASQMMQLAMALEASGKNFIWVVRPP 317 (493)
Q Consensus 292 ~~~~~~~i~~al~~~~~~vi~~~~~~ 317 (493)
+.+....+.+++.....+.||.+.+.
T Consensus 63 d~~Ra~dL~~a~~Dp~i~aI~~~rGG 88 (331)
T 4e5s_A 63 ISSRVQDLHEAFRDPNVKAILTTLGG 88 (331)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred HHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 44567779999999999999998776
No 153
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=33.73 E-value=1.3e+02 Score=25.64 Aligned_cols=48 Identities=17% Similarity=0.051 Sum_probs=33.7
Q ss_pred hhHHhhccCCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEE
Q 011106 266 KFCKEWLDSKDENSVLYISFGSMNTISASQMMQLAMALEASGKNFIWV 313 (493)
Q Consensus 266 ~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~ 313 (493)
+-+.+|+.+...+.++||..+|......+.+..+.++++..|..+.+.
T Consensus 16 ~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~ 63 (206)
T 3l4e_A 16 PLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEEL 63 (206)
T ss_dssp HHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 345566644444669999988775444566777899999999876544
No 154
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=33.64 E-value=35 Score=27.67 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=28.6
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
..+++|++.++ | +.|++++++.|.+ +|.+|+++ ...
T Consensus 23 ~~~~llIaGG~-G-ItPl~sm~~~l~~--~~~~v~l~-g~r 58 (158)
T 3lrx_A 23 FGKILAIGAYT-G-IVEVYPIAKAWQE--IGNDVTTL-HVT 58 (158)
T ss_dssp CSEEEEEEETT-H-HHHHHHHHHHHHH--HTCEEEEE-EEC
T ss_pred CCeEEEEEccC-c-HHHHHHHHHHHHh--cCCcEEEE-EeC
Confidence 35788887444 4 8999999999998 88899998 654
No 155
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=33.46 E-value=32 Score=31.33 Aligned_cols=36 Identities=8% Similarity=0.040 Sum_probs=27.9
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
|.+..++|.++-.+..|+ .+|..|.+ +||+|+++..
T Consensus 11 ~~~~~~~I~VIG~G~mG~-----~iA~~la~--~G~~V~~~d~ 46 (302)
T 1f0y_A 11 KKIIVKHVTVIGGGLMGA-----GIAQVAAA--TGHTVVLVDQ 46 (302)
T ss_dssp -CCCCCEEEEECCSHHHH-----HHHHHHHH--TTCEEEEECS
T ss_pred ccccCCEEEEECCCHHHH-----HHHHHHHh--CCCeEEEEEC
Confidence 333346899998888887 58889999 9999998864
No 156
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=33.20 E-value=59 Score=28.63 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=26.9
Q ss_pred CCCCCcEEEEECCCCcc-----------cHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 1 MAQSKENIVMFPFMAQG-----------HIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 1 m~~~~~~il~~~~~~~G-----------H~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
|+ ++||+++.....+ ...=++...+.|.+ .|++|+++++.
T Consensus 1 m~--m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~--aG~~V~iaS~~ 51 (244)
T 3kkl_A 1 MT--PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEK--HGFEVDFVSET 51 (244)
T ss_dssp ----CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHT--TTCEEEEEESS
T ss_pred CC--CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 55 3578877765322 12346777789999 99999999854
No 157
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=33.15 E-value=22 Score=27.90 Aligned_cols=33 Identities=9% Similarity=0.058 Sum_probs=25.0
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
++||+++-.+.. -..+|+.|.+ +||+|+++...
T Consensus 6 ~~~v~I~G~G~i-----G~~la~~L~~--~g~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGSEAA-----GVGLVRELTA--AGKKVLAVDKS 38 (141)
T ss_dssp CCSEEEECCSHH-----HHHHHHHHHH--TTCCEEEEESC
T ss_pred CCEEEEECCCHH-----HHHHHHHHHH--CCCeEEEEECC
Confidence 457888865433 3578999999 99999998643
No 158
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=32.39 E-value=43 Score=26.50 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=28.7
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
..++++++.+. =+.|++.+++.|.+ +|.+|+++ ..+
T Consensus 18 ~~~~llIaGG~--GiaPl~sm~~~l~~--~~~~v~l~-g~R 53 (142)
T 3lyu_A 18 FGKILAIGAYT--GIVEVYPIAKAWQE--IGNDVTTL-HVT 53 (142)
T ss_dssp CSEEEEEEETT--HHHHHHHHHHHHHH--TTCEEEEE-EEE
T ss_pred CCeEEEEECcC--cHHHHHHHHHHHHh--cCCcEEEE-EeC
Confidence 35788887444 37999999999999 89999998 554
No 159
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=32.19 E-value=1e+02 Score=29.60 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=19.5
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCe
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNY 36 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh 36 (493)
++|||+++-.++.-| +||+.|.+ .++
T Consensus 2 ~~mkvlviG~ggre~-----ala~~l~~--s~~ 27 (431)
T 3mjf_A 2 NAMNILIIGNGGREH-----ALGWKAAQ--SPL 27 (431)
T ss_dssp -CEEEEEEECSHHHH-----HHHHHHTT--CTT
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHh--CCC
Confidence 458999998887655 68999988 553
No 160
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=32.06 E-value=2.8e+02 Score=26.59 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
+++||+++..++ ...++++.|.+. .|+++.++.+
T Consensus 23 m~~~IlIlG~g~-----r~~al~~~~a~~-~g~~~v~~~~ 56 (452)
T 2qk4_A 23 MAARVLIIGSGG-----REHTLAWKLAQS-HHVKQVLVAP 56 (452)
T ss_dssp CSEEEEEEECSH-----HHHHHHHHHTTC-TTEEEEEEEE
T ss_pred cCcEEEEECCCH-----HHHHHHHHHHhc-CCCCEEEEEC
Confidence 357899987763 345678888652 5898777754
No 161
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=31.92 E-value=2.5e+02 Score=26.70 Aligned_cols=34 Identities=9% Similarity=0.011 Sum_probs=25.2
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
+++|+++..+ .-...+++++++ .||+|..+....
T Consensus 19 ~~~ili~g~g-----~~g~~~~~a~~~--~G~~v~~v~~~~ 52 (433)
T 2dwc_A 19 AQKILLLGSG-----ELGKEIAIEAQR--LGVEVVAVDRYA 52 (433)
T ss_dssp CCEEEEESCS-----HHHHHHHHHHHH--TTCEEEEEESST
T ss_pred CCEEEEECCC-----HHHHHHHHHHHH--CCCEEEEEECCC
Confidence 4689988543 234677899999 999998887543
No 162
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=31.29 E-value=2.9e+02 Score=27.33 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=26.9
Q ss_pred HHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHc-------CCceEEE
Q 011106 102 AFKEVISSLINQGRPPLCIIADIFFGWTCGVAKEL-------NVFHAIF 143 (493)
Q Consensus 102 ~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~l-------giP~i~~ 143 (493)
.+.+.+++.+ ||++|.+.. +..+|+.+ |||++.+
T Consensus 425 ~l~~~i~~~~-----pDLiig~~~---~~~~a~~~~~~g~~~gip~v~i 465 (519)
T 1qgu_B 425 HFRSLMFTRQ-----PDFMIGNSY---GKFIQRDTLAKGKAFEVPLIRL 465 (519)
T ss_dssp HHHHHHHHHC-----CSEEEECGG---GHHHHHHHHHHCGGGCCCEEEC
T ss_pred HHHHHHhhcC-----CCEEEECcc---hHHHHHHhhcccccCCCCeEEe
Confidence 5566777777 999999963 57778888 9999876
No 163
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=31.06 E-value=1.6e+02 Score=26.72 Aligned_cols=40 Identities=18% Similarity=0.046 Sum_probs=24.4
Q ss_pred HHHHHHHHhhcCCCCCcEEEECCcch-hhHHHHHHcCCceEEEech
Q 011106 102 AFKEVISSLINQGRPPLCIIADIFFG-WTCGVAKELNVFHAIFSGS 146 (493)
Q Consensus 102 ~l~~~l~~~~~~~~~pDlvI~D~~~~-~~~~~A~~lgiP~i~~~~~ 146 (493)
.+.+.+++.. ||+||+-.+.. -...+-......++-++++
T Consensus 66 ~~~~~l~~~~-----~Dliv~~~y~~ilp~~il~~~~~g~iNiHpS 106 (305)
T 2bln_A 66 LWVERIAQLS-----PDVIFSFYYRHLIYDEILQLAPAGAFNLHGS 106 (305)
T ss_dssp HHHHHHHHTC-----CSEEEEESCCSCCCHHHHTTCTTCEEEEESS
T ss_pred HHHHHHHhcC-----CCEEEEeccccccCHHHHhcCcCCEEEecCC
Confidence 4556677777 99999875532 2334444445556766655
No 164
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=31.04 E-value=40 Score=32.00 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=27.9
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVS 42 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~ 42 (493)
|++++.+|+++-.+-.| +.+|..|.+ +|++|+++=
T Consensus 1 M~~~~~~V~IVGaG~aG-----l~~A~~L~~--~G~~v~v~E 35 (397)
T 2vou_A 1 MSPTTDRIAVVGGSISG-----LTAALMLRD--AGVDVDVYE 35 (397)
T ss_dssp -CCCCSEEEEECCSHHH-----HHHHHHHHH--TTCEEEEEC
T ss_pred CCCCCCcEEEECCCHHH-----HHHHHHHHh--CCCCEEEEe
Confidence 77677899999866444 778899999 999999994
No 165
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=30.96 E-value=36 Score=30.67 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=22.8
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
|||+++ |+.|.+= -+|++.|.+ +||+|+.++-
T Consensus 1 MkILVT--GatGfIG--~~L~~~L~~--~G~~V~~l~R 32 (298)
T 4b4o_A 1 MRVLVG--GGTGFIG--TALTQLLNA--RGHEVTLVSR 32 (298)
T ss_dssp CEEEEE--TTTSHHH--HHHHHHHHH--TTCEEEEEES
T ss_pred CEEEEE--CCCCHHH--HHHHHHHHH--CCCEEEEEEC
Confidence 566655 3444432 468999999 9999999863
No 166
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=30.34 E-value=44 Score=29.47 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=31.0
Q ss_pred CCCCCcEEEEEC--CCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 1 MAQSKENIVMFP--FMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 1 m~~~~~~il~~~--~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
|+..+++++.+. -++-|=..-...||..|.+ +|++|.++-..
T Consensus 1 m~~~~~~vI~v~s~kGGvGKTt~a~~LA~~la~--~g~~VlliD~D 44 (257)
T 1wcv_1 1 MLRAKVRRIALANQKGGVGKTTTAINLAAYLAR--LGKRVLLVDLD 44 (257)
T ss_dssp ----CCCEEEECCSSCCHHHHHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred CCCCCCEEEEEEeCCCCchHHHHHHHHHHHHHH--CCCCEEEEECC
Confidence 665555655554 4788999999999999999 99999998544
No 167
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=30.26 E-value=2.7e+02 Score=24.21 Aligned_cols=37 Identities=14% Similarity=-0.057 Sum_probs=26.3
Q ss_pred cEEEEECCCCcccH-HHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 6 ENIVMFPFMAQGHI-IPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 6 ~~il~~~~~~~GH~-~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
|||+++-.-+.-++ ..+...++.+.. .|.+|.+++.+
T Consensus 2 mrilvINPnts~~~T~~i~~~~~~~~~--p~~~i~~~t~~ 39 (245)
T 3qvl_A 2 VRIQVINPNTSLAMTETIGAAARAVAA--PGTEILAVCPR 39 (245)
T ss_dssp EEEEEECSSCCHHHHHHHHHHHHHHCC--TTEEEEEECCS
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHhcC--CCCEEEEEeCC
Confidence 46776665555555 566778888887 89999988854
No 168
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=30.24 E-value=83 Score=23.46 Aligned_cols=35 Identities=9% Similarity=0.114 Sum_probs=26.9
Q ss_pred cccHHHHHHHHHHHHhcCC-Ce-EEEEEeCccchhhhhc
Q 011106 16 QGHIIPFLALALHIEQRHK-NY-SITFVSTPLNIKKLKS 52 (493)
Q Consensus 16 ~GH~~p~l~LA~~L~~~~~-Gh-~Vt~~~~~~~~~~v~~ 52 (493)
.......+.+|..+.+ . || +|+++-.......+.+
T Consensus 15 ~~~~~~al~~a~~~~~--~~g~~~v~vff~~dgV~~~~~ 51 (117)
T 1jx7_A 15 SESLFNSLRLAIALRE--QESNLDLRLFLMSDAVTAGLR 51 (117)
T ss_dssp CSHHHHHHHHHHHHHH--HCTTCEEEEEECGGGGGGGBS
T ss_pred cHHHHHHHHHHHHHHh--cCCCccEEEEEEchHHHHHhc
Confidence 4556778999999998 8 99 9999987766555543
No 169
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=29.91 E-value=46 Score=30.59 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=31.3
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
+||+++-.++.|- .+|..|.+ .||+|+++.-.. .+.+.+
T Consensus 3 mkI~IiGaGaiG~-----~~a~~L~~--~g~~V~~~~r~~-~~~i~~ 41 (320)
T 3i83_A 3 LNILVIGTGAIGS-----FYGALLAK--TGHCVSVVSRSD-YETVKA 41 (320)
T ss_dssp CEEEEESCCHHHH-----HHHHHHHH--TTCEEEEECSTT-HHHHHH
T ss_pred CEEEEECcCHHHH-----HHHHHHHh--CCCeEEEEeCCh-HHHHHh
Confidence 7899998888885 57889999 999999998655 355555
No 170
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=29.56 E-value=64 Score=28.08 Aligned_cols=38 Identities=8% Similarity=-0.006 Sum_probs=34.0
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
+.+|++..-|+.|=..-++.+|..|.. +|++|.++...
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~--~G~~V~v~d~D 43 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLR--QGVRVMAGVVE 43 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH--CCCCEEEEEeC
Confidence 468888889999999999999999999 99999887654
No 171
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=29.23 E-value=36 Score=31.00 Aligned_cols=33 Identities=9% Similarity=-0.067 Sum_probs=26.7
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
+++||.|+-.+..|. .+|+.|.+ .||+|+++..
T Consensus 6 ~~~~I~iIG~G~mG~-----~~a~~l~~--~G~~V~~~dr 38 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGM-----GAARSCLR--AGLSTWGADL 38 (303)
T ss_dssp -CCEEEEECCSHHHH-----HHHHHHHH--TTCEEEEECS
T ss_pred CCCeEEEECCCHHHH-----HHHHHHHH--CCCeEEEEEC
Confidence 457899998777775 68899999 9999999853
No 172
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=29.19 E-value=54 Score=24.26 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCC-eEEEEEeCc
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKN-YSITFVSTP 44 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~G-h~Vt~~~~~ 44 (493)
+.++|+++-.+..| ..+++.|.+ +| |+|+++...
T Consensus 4 ~~~~v~I~G~G~iG-----~~~~~~l~~--~g~~~v~~~~r~ 38 (118)
T 3ic5_A 4 MRWNICVVGAGKIG-----QMIAALLKT--SSNYSVTVADHD 38 (118)
T ss_dssp TCEEEEEECCSHHH-----HHHHHHHHH--CSSEEEEEEESC
T ss_pred CcCeEEEECCCHHH-----HHHHHHHHh--CCCceEEEEeCC
Confidence 34678887554444 467889999 99 999888643
No 173
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=29.00 E-value=34 Score=26.48 Aligned_cols=28 Identities=25% Similarity=0.052 Sum_probs=19.1
Q ss_pred CcEEEECCcch--hhHHHH---HHcCCceEEEe
Q 011106 117 PLCIIADIFFG--WTCGVA---KELNVFHAIFS 144 (493)
Q Consensus 117 pDlvI~D~~~~--~~~~~A---~~lgiP~i~~~ 144 (493)
||+||.|...+ -|..++ +..++|++.++
T Consensus 54 ~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lT 86 (123)
T 2lpm_A 54 FDIAIIDVNLDGEPSYPVADILAERNVPFIFAT 86 (123)
T ss_dssp SSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBC
T ss_pred CCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEe
Confidence 99999997765 344444 44578877664
No 174
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=28.89 E-value=63 Score=33.70 Aligned_cols=119 Identities=7% Similarity=0.043 Sum_probs=77.1
Q ss_pred EeeccChHHhhccCCcCceeeccCchhHHHHHHhCCcEecccccccchhhHHHHhhhhceeEEeec--CCCCccCHHHHH
Q 011106 349 MKNWAPQLEVLSHRATCAFLSHCGWNSVLEALIHGVPIIGWPMAAEQFFNAKFLEQEMGVCVEVAR--GKTCEVKHEDVV 426 (493)
Q Consensus 349 ~~~~~pq~~lL~~~~v~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~--~~~~~~~~~~l~ 426 (493)
+.++.+-.++|..+++ +||=- .+.+.|.+..++|+|......|++.+-. + |.=..... -..---+.++|.
T Consensus 603 ~~~~~di~~ll~~aD~--lITDy-SSv~fD~~~l~kPiif~~~D~~~Y~~~~----r-g~y~d~~~~~pg~~~~~~~eL~ 674 (729)
T 3l7i_A 603 VSNYNDVSELFLISDC--LITDY-SSVMFDYGILKRPQFFFAYDIDKYDKGL----R-GFYMNYMEDLPGPIYTEPYGLA 674 (729)
T ss_dssp CTTCSCHHHHHHTCSE--EEESS-CTHHHHHGGGCCCEEEECTTTTTTTSSC----C-SBSSCTTSSSSSCEESSHHHHH
T ss_pred CCCCcCHHHHHHHhCE--EEeec-hHHHHhHHhhCCCEEEecCCHHHHhhcc----C-CcccChhHhCCCCeECCHHHHH
Confidence 3345566889988886 88853 4567799999999999987777765310 1 22111100 001235788999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHHHhhcc
Q 011106 427 AKIELVMNETDKGKEIRRKVSEVREMIKNAMKDEEGCRGSSVKAMDDFLSAAISMKN 483 (493)
Q Consensus 427 ~ai~~~l~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 483 (493)
++|....... ..++++.+++.+.+-. . .+|.++.+.++.|++....-.+
T Consensus 675 ~~i~~~~~~~---~~~~~~~~~~~~~~~~-~----~dg~as~ri~~~i~~~~~~~~~ 723 (729)
T 3l7i_A 675 KELKNLDKVQ---QQYQEKIDAFYDRFCS-V----DNGKASQYIGDLIHKDIKEQLE 723 (729)
T ss_dssp HHHTTHHHHH---HHTHHHHHHHHHHHST-T----CCSCHHHHHHHHHHHHHHHHCC
T ss_pred HHHhhhhccc---hhHHHHHHHHHHHhCC-c----cCChHHHHHHHHHHhcCcCccc
Confidence 9998776522 1577788888877742 1 5677788888888877665443
No 175
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=28.62 E-value=34 Score=31.47 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=27.6
Q ss_pred EEEECCCCcccHH--------------HHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 8 IVMFPFMAQGHII--------------PFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 8 il~~~~~~~GH~~--------------p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
|++.+.|+.=.+. .-.+||+.+.+ +|++|++++.+
T Consensus 40 VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~--~Ga~V~lv~g~ 88 (313)
T 1p9o_A 40 VLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLA--AGYGVLFLYRA 88 (313)
T ss_dssp EEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHH--TTCEEEEEEET
T ss_pred EEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHH--CCCEEEEEecC
Confidence 6666677765552 45689999999 99999999865
No 176
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=28.29 E-value=69 Score=24.43 Aligned_cols=44 Identities=9% Similarity=0.141 Sum_probs=29.7
Q ss_pred CcEEEEECCCC-cccH-HHHHHHHHHHHhcCCC--eEEEEEeCccchhhh
Q 011106 5 KENIVMFPFMA-QGHI-IPFLALALHIEQRHKN--YSITFVSTPLNIKKL 50 (493)
Q Consensus 5 ~~~il~~~~~~-~GH~-~p~l~LA~~L~~~~~G--h~Vt~~~~~~~~~~v 50 (493)
.+|++|+-+-. .-.. +-.+..|...++ +| |+|.++.........
T Consensus 7 ~~K~~ivi~s~d~~~~~~~al~~A~~a~~--~G~~~eV~i~~~G~~v~L~ 54 (117)
T 2fb6_A 7 NDKLTILWTTDNKDTVFNMLAMYALNSKN--RGWWKHINIILWGASVKLV 54 (117)
T ss_dssp TSEEEEEECCCCHHHHHHTHHHHHHHHHH--HTSCSEEEEEECSHHHHHH
T ss_pred CCeEEEEEEcCChHHHHHHHHHHHHHHHH--cCCCCcEEEEEECCeeeec
Confidence 46777666543 2222 346788888888 88 899999877655543
No 177
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=27.87 E-value=83 Score=28.04 Aligned_cols=41 Identities=27% Similarity=0.184 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhcCCCCCcEEEECCcch------hhHHHHHHcCCceEEEech
Q 011106 101 PAFKEVISSLINQGRPPLCIIADIFFG------WTCGVAKELNVFHAIFSGS 146 (493)
Q Consensus 101 ~~l~~~l~~~~~~~~~pDlvI~D~~~~------~~~~~A~~lgiP~i~~~~~ 146 (493)
..+.+++++.. ||+||+-.-+. -+..+|..||+|+++..+.
T Consensus 102 ~~La~~i~~~~-----~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~~ 148 (264)
T 1o97_C 102 RILTEVIKKEA-----PDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVAD 148 (264)
T ss_dssp HHHHHHHHHHC-----CSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHhcC-----CCEEEEcCCccCCchhhHHHHHHHHhCCCcccceEE
Confidence 45666677766 99999875442 5779999999999987543
No 178
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=27.87 E-value=72 Score=27.75 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=21.1
Q ss_pred CcEEEEECCC-Ccc-cHHHHHHHHHHHHh
Q 011106 5 KENIVMFPFM-AQG-HIIPFLALALHIEQ 31 (493)
Q Consensus 5 ~~~il~~~~~-~~G-H~~p~l~LA~~L~~ 31 (493)
+++|++.-|. +.| -+||...+++.|..
T Consensus 23 mk~VLvTGF~PF~g~~~NPS~~~v~~L~~ 51 (228)
T 4hps_A 23 MKTILVTAFDPFGGEAINPSWEAIKPLQG 51 (228)
T ss_dssp CEEEEEEEECCCTTCSCCHHHHHHGGGTT
T ss_pred CCEEEEEeccCCCCCCCChHHHHHHHhcC
Confidence 4688888864 444 47999999999977
No 179
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=27.44 E-value=47 Score=31.61 Aligned_cols=61 Identities=11% Similarity=0.345 Sum_probs=39.8
Q ss_pred ChHHhhccCCcCceeeccCchhHHHHHHh----CC-cEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHH
Q 011106 354 PQLEVLSHRATCAFLSHCGWNSVLEALIH----GV-PIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAK 428 (493)
Q Consensus 354 pq~~lL~~~~v~~~I~HgG~gs~~eal~~----Gv-P~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~a 428 (493)
+..++-..++ ++|+=||=||++.++.. ++ |+|.+... .+|.= ..++.+++.++
T Consensus 107 ~~~~~~~~~D--lVIvlGGDGTlL~aa~~~~~~~vpPiLGIN~G------------~lGFL--------t~~~~~~~~~a 164 (388)
T 3afo_A 107 PEQDIVNRTD--LLVTLGGDGTILHGVSMFGNTQVPPVLAFALG------------TLGFL--------SPFDFKEHKKV 164 (388)
T ss_dssp CHHHHHHHCS--EEEEEESHHHHHHHHHTTTTSCCCCEEEEECS------------SCCSS--------CCEEGGGHHHH
T ss_pred chhhcccCCC--EEEEEeCcHHHHHHHHHhcccCCCeEEEEECC------------CcccC--------CcCChHHHHHH
Confidence 3344444555 49999999999999754 56 78888531 21211 12445778888
Q ss_pred HHHHhcCC
Q 011106 429 IELVMNET 436 (493)
Q Consensus 429 i~~~l~~~ 436 (493)
+.++++..
T Consensus 165 l~~il~g~ 172 (388)
T 3afo_A 165 FQEVISSR 172 (388)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 88888654
No 180
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A
Probab=27.43 E-value=79 Score=27.37 Aligned_cols=27 Identities=11% Similarity=0.231 Sum_probs=20.9
Q ss_pred CcEEEEECCC-Ccc-cHHHHHHHHHHHHh
Q 011106 5 KENIVMFPFM-AQG-HIIPFLALALHIEQ 31 (493)
Q Consensus 5 ~~~il~~~~~-~~G-H~~p~l~LA~~L~~ 31 (493)
++||++..|. +.| .+||...+++.|..
T Consensus 2 m~~VLvTGF~PF~~~~~NPS~~~v~~L~~ 30 (223)
T 3ro0_A 2 EKKVLLTGFDPFGGETVNPSWEAVKRLNG 30 (223)
T ss_dssp CEEEEEEEECCCTTCSCCHHHHHHHHTTT
T ss_pred CCEEEEEeCCCCCCCCCChHHHHHHHhcc
Confidence 4688888864 444 47999999999976
No 181
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=27.30 E-value=3.6e+02 Score=24.68 Aligned_cols=127 Identities=17% Similarity=0.147 Sum_probs=68.1
Q ss_pred cEEEEeccCCcCCCHHHHHHHHHHHHhC--CCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChH
Q 011106 279 SVLYISFGSMNTISASQMMQLAMALEAS--GKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQL 356 (493)
Q Consensus 279 ~~V~vs~GS~~~~~~~~~~~i~~al~~~--~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~ 356 (493)
.+.+|+.|.+.. ..+.++... +..++.+...+. .. ...+.++. ++ .-+-...
T Consensus 15 rvgiiG~G~~g~-------~~~~~l~~~~~~~~lvav~d~~~-------~~-----~~~~~~~~-----~~--~~~~~~~ 68 (354)
T 3q2i_A 15 RFALVGCGRIAN-------NHFGALEKHADRAELIDVCDIDP-------AA-----LKAAVERT-----GA--RGHASLT 68 (354)
T ss_dssp EEEEECCSTTHH-------HHHHHHHHTTTTEEEEEEECSSH-------HH-----HHHHHHHH-----CC--EEESCHH
T ss_pred eEEEEcCcHHHH-------HHHHHHHhCCCCeEEEEEEcCCH-------HH-----HHHHHHHc-----CC--ceeCCHH
Confidence 488999988762 345666665 455555554321 00 01222222 22 3455678
Q ss_pred HhhccCCcCceeeccCc----hhHHHHHHhCCcEec-ccccc--cchhh-HHHHhhhhceeEEeecCCCCccCHHHHHHH
Q 011106 357 EVLSHRATCAFLSHCGW----NSVLEALIHGVPIIG-WPMAA--EQFFN-AKFLEQEMGVCVEVARGKTCEVKHEDVVAK 428 (493)
Q Consensus 357 ~lL~~~~v~~~I~HgG~----gs~~eal~~GvP~l~-~P~~~--DQ~~n-a~~v~~~lG~G~~~~~~~~~~~~~~~l~~a 428 (493)
++|..+++++++----. --+.+++.+|+++++ -|+.. ++-.- .+.+++. |+-+.+.. .....+ ..+.
T Consensus 69 ~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~-g~~~~v~~--~~r~~p--~~~~ 143 (354)
T 3q2i_A 69 DMLAQTDADIVILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKA-KKHLFVVK--QNRRNA--TLQL 143 (354)
T ss_dssp HHHHHCCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH-TCCEEECC--GGGGSH--HHHH
T ss_pred HHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHh-CCeEEEEE--cccCCH--HHHH
Confidence 88886666666643322 246678999999887 46543 33332 3333434 66555543 223343 3445
Q ss_pred HHHHhcCC
Q 011106 429 IELVMNET 436 (493)
Q Consensus 429 i~~~l~~~ 436 (493)
+++++.+.
T Consensus 144 ~k~~i~~g 151 (354)
T 3q2i_A 144 LKRAMQEK 151 (354)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcC
Confidence 56666544
No 182
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=27.26 E-value=45 Score=25.67 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=23.6
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
.+||+++-. |.+- ..+|+.|.+ .||+|+++..
T Consensus 4 ~m~i~IiG~---G~iG--~~~a~~L~~--~g~~v~~~d~ 35 (140)
T 1lss_A 4 GMYIIIAGI---GRVG--YTLAKSLSE--KGHDIVLIDI 35 (140)
T ss_dssp -CEEEEECC---SHHH--HHHHHHHHH--TTCEEEEEES
T ss_pred CCEEEEECC---CHHH--HHHHHHHHh--CCCeEEEEEC
Confidence 468888844 5443 367899999 9999999864
No 183
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=27.13 E-value=1.6e+02 Score=26.71 Aligned_cols=28 Identities=14% Similarity=0.001 Sum_probs=23.5
Q ss_pred cCceeeccCchhHHHHHH------hCCcEecccc
Q 011106 364 TCAFLSHCGWNSVLEALI------HGVPIIGWPM 391 (493)
Q Consensus 364 v~~~I~HgG~gs~~eal~------~GvP~l~~P~ 391 (493)
.+++|.-||=||+.|++. .++|+.++|.
T Consensus 64 ~d~vv~~GGDGTl~~v~~~l~~~~~~~~l~iiP~ 97 (304)
T 3s40_A 64 VDLIIVFGGDGTVFECTNGLAPLEIRPTLAIIPG 97 (304)
T ss_dssp CSEEEEEECHHHHHHHHHHHTTCSSCCEEEEEEC
T ss_pred CCEEEEEccchHHHHHHHHHhhCCCCCcEEEecC
Confidence 345999999999999865 5789999996
No 184
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=27.08 E-value=55 Score=29.39 Aligned_cols=33 Identities=6% Similarity=0.142 Sum_probs=25.8
Q ss_pred CCcEEEEECC-CCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 4 SKENIVMFPF-MAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 4 ~~~~il~~~~-~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
++++|.|+-. +..|. .+|+.|.+ .||+|+++..
T Consensus 10 mmm~I~iIG~tG~mG~-----~la~~l~~--~g~~V~~~~r 43 (286)
T 3c24_A 10 GPKTVAILGAGGKMGA-----RITRKIHD--SAHHLAAIEI 43 (286)
T ss_dssp CCCEEEEETTTSHHHH-----HHHHHHHH--SSSEEEEECC
T ss_pred cCCEEEEECCCCHHHH-----HHHHHHHh--CCCEEEEEEC
Confidence 3468999887 76664 57889999 9999997753
No 185
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=26.97 E-value=1.2e+02 Score=26.13 Aligned_cols=44 Identities=11% Similarity=0.036 Sum_probs=29.2
Q ss_pred eEEeeccCh-HH-hhccCCcCceeeccCchhHHHHH---------HhCCcEecccc
Q 011106 347 LLMKNWAPQ-LE-VLSHRATCAFLSHCGWNSVLEAL---------IHGVPIIGWPM 391 (493)
Q Consensus 347 v~~~~~~pq-~~-lL~~~~v~~~I~HgG~gs~~eal---------~~GvP~l~~P~ 391 (493)
+.++...+. .. ++..++. .++--||.||+-|.. .+++|++++-.
T Consensus 89 ~~~~~~~~~Rk~~~~~~sda-~I~lpGG~GTLdElfE~lt~~qlg~~~kPvvll~~ 143 (216)
T 1ydh_A 89 VRVVADMHERKAAMAQEAEA-FIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNV 143 (216)
T ss_dssp EEEESSHHHHHHHHHHHCSE-EEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECG
T ss_pred ccccCCHHHHHHHHHHhCCE-EEEeCCCccHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 445555544 23 3344453 677889999988765 57999998863
No 186
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=26.91 E-value=68 Score=27.25 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=24.4
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
|+ .+++|+++ |+.|.+= ..|++.|.+ +||+|+.+.-.
T Consensus 1 M~-~m~~ilIt--GatG~iG--~~l~~~L~~--~g~~V~~~~r~ 37 (227)
T 3dhn_A 1 ME-KVKKIVLI--GASGFVG--SALLNEALN--RGFEVTAVVRH 37 (227)
T ss_dssp ---CCCEEEEE--TCCHHHH--HHHHHHHHT--TTCEEEEECSC
T ss_pred CC-CCCEEEEE--cCCchHH--HHHHHHHHH--CCCEEEEEEcC
Confidence 55 34677666 3444332 478999999 99999998743
No 187
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=26.87 E-value=67 Score=29.61 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=28.6
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
.++||.|+-.++.| +-.+|+.|.+ +||+|+..=.
T Consensus 3 ~~~~i~~iGiGg~G----ms~~A~~L~~--~G~~V~~~D~ 36 (326)
T 3eag_A 3 AMKHIHIIGIGGTF----MGGLAAIAKE--AGFEVSGCDA 36 (326)
T ss_dssp CCCEEEEESCCSHH----HHHHHHHHHH--TTCEEEEEES
T ss_pred CCcEEEEEEECHHH----HHHHHHHHHh--CCCEEEEEcC
Confidence 35789999999888 4569999999 9999999853
No 188
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=26.84 E-value=64 Score=27.78 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=20.4
Q ss_pred CCcEEEEECCC-Ccc-cHHHHHHHHHHHHh
Q 011106 4 SKENIVMFPFM-AQG-HIIPFLALALHIEQ 31 (493)
Q Consensus 4 ~~~~il~~~~~-~~G-H~~p~l~LA~~L~~ 31 (493)
.++||++.-|. +.| -+||...+++.|..
T Consensus 2 ~~m~VLvTGF~PF~~~~~NPS~~~v~~L~~ 31 (215)
T 3giu_A 2 NAMHILVTGFAPFDNQNINPSWEAVTQLED 31 (215)
T ss_dssp --CEEEEEEECCCTTCSCCHHHHHHHHSCS
T ss_pred CCcEEEEEecCCCCCCCCChHHHHHHHhcc
Confidence 45789988874 333 47999999999965
No 189
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=26.74 E-value=56 Score=29.16 Aligned_cols=41 Identities=7% Similarity=-0.035 Sum_probs=32.0
Q ss_pred CCCcEEEEECCC---CcccHHHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 3 QSKENIVMFPFM---AQGHIIPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 3 ~~~~~il~~~~~---~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
|+.+|.+|++.+ +.|-=.-.-.|+..|+. +|++||..=-.+
T Consensus 20 ~~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~--~G~~Vt~~K~DP 63 (295)
T 2vo1_A 20 FQSMKYILVTGGVISGIGKGIIASSVGTILKS--CGLHVTSIKIDP 63 (295)
T ss_dssp -CCCEEEEEEECSSSSSSHHHHHHHHHHHHHH--TTCCEEEEEEEC
T ss_pred cccceEEEEcCCcccccccHHHHHHHHHHHHH--CCCcceeeeccc
Confidence 356789999854 66666778889999999 999999985443
No 190
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=26.60 E-value=46 Score=30.61 Aligned_cols=42 Identities=7% Similarity=0.192 Sum_probs=31.1
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
.++||+++-.|+.|- .+|..|.+ .||+|+++..+...+.+.+
T Consensus 18 ~~~kI~IiGaGa~G~-----~~a~~L~~--~G~~V~l~~~~~~~~~i~~ 59 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGC-----YYGGMLAR--AGHEVILIARPQHVQAIEA 59 (318)
T ss_dssp --CEEEEESCSHHHH-----HHHHHHHH--TTCEEEEECCHHHHHHHHH
T ss_pred cCCcEEEECcCHHHH-----HHHHHHHH--CCCeEEEEEcHhHHHHHHh
Confidence 467899998888884 57889999 9999999954444555555
No 191
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=26.31 E-value=35 Score=30.52 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=24.2
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
+++|+++- + |. =-..|++.|.+ +||+|+.++-.
T Consensus 3 ~~~ilVtG--a-G~--iG~~l~~~L~~--~g~~V~~~~r~ 35 (286)
T 3gpi_A 3 LSKILIAG--C-GD--LGLELARRLTA--QGHEVTGLRRS 35 (286)
T ss_dssp CCCEEEEC--C-SH--HHHHHHHHHHH--TTCCEEEEECT
T ss_pred CCcEEEEC--C-CH--HHHHHHHHHHH--CCCEEEEEeCC
Confidence 45777773 4 63 34578999999 99999998743
No 192
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=26.18 E-value=50 Score=30.56 Aligned_cols=33 Identities=6% Similarity=0.084 Sum_probs=27.4
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
+++||.|+-.+..|- .+|..|.+ .||+|+++..
T Consensus 13 ~~~kI~iIG~G~mG~-----ala~~L~~--~G~~V~~~~r 45 (335)
T 1z82_A 13 MEMRFFVLGAGSWGT-----VFAQMLHE--NGEEVILWAR 45 (335)
T ss_dssp -CCEEEEECCSHHHH-----HHHHHHHH--TTCEEEEECS
T ss_pred cCCcEEEECcCHHHH-----HHHHHHHh--CCCeEEEEeC
Confidence 468999998887774 78899999 9999999864
No 193
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=26.16 E-value=1.4e+02 Score=28.94 Aligned_cols=38 Identities=5% Similarity=0.030 Sum_probs=25.6
Q ss_pred CCCC-CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 1 MAQS-KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 1 m~~~-~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
|+.+ ++||+++. .|. -.+.+++++++ .|++|.++.+..
T Consensus 1 m~~~~~k~ILI~g---~g~--~~~~i~~a~~~--~G~~vv~v~~~~ 39 (461)
T 2dzd_A 1 METRRIRKVLVAN---RGE--IAIRVFRACTE--LGIRTVAIYSKE 39 (461)
T ss_dssp --CCCCSEEEECS---CHH--HHHHHHHHHHH--HTCEEEEEECGG
T ss_pred CCCCcCcEEEEEC---CcH--HHHHHHHHHHH--cCCEEEEEECCc
Confidence 6644 45788763 243 25688999999 999998886543
No 194
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=26.14 E-value=37 Score=30.85 Aligned_cols=32 Identities=9% Similarity=0.071 Sum_probs=26.9
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
++||.|+-.+..|. .+|+.|.+ +||+|+++..
T Consensus 15 ~~~I~vIG~G~mG~-----~~A~~l~~--~G~~V~~~dr 46 (296)
T 3qha_A 15 QLKLGYIGLGNMGA-----PMATRMTE--WPGGVTVYDI 46 (296)
T ss_dssp CCCEEEECCSTTHH-----HHHHHHTT--STTCEEEECS
T ss_pred CCeEEEECcCHHHH-----HHHHHHHH--CCCeEEEEeC
Confidence 56899998888875 67999999 9999998853
No 195
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=26.05 E-value=58 Score=29.37 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=26.0
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
|+ .++||.|+-.+..|. .+|..|.+ .||+|+++..
T Consensus 1 M~-~~~~i~iiG~G~~G~-----~~a~~l~~--~g~~V~~~~~ 35 (301)
T 3cky_A 1 ME-KSIKIGFIGLGAMGK-----PMAINLLK--EGVTVYAFDL 35 (301)
T ss_dssp ----CCEEEEECCCTTHH-----HHHHHHHH--TTCEEEEECS
T ss_pred CC-CCCEEEEECccHHHH-----HHHHHHHH--CCCeEEEEeC
Confidence 66 567999998887776 46888999 9999987753
No 196
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=26.04 E-value=48 Score=30.06 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=25.8
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
+++||+++-.+..|. .+|..|.+ .||+|+++..
T Consensus 2 ~~m~i~iiG~G~~G~-----~~a~~l~~--~g~~V~~~~r 34 (316)
T 2ew2_A 2 NAMKIAIAGAGAMGS-----RLGIMLHQ--GGNDVTLIDQ 34 (316)
T ss_dssp --CEEEEECCSHHHH-----HHHHHHHH--TTCEEEEECS
T ss_pred CCCeEEEECcCHHHH-----HHHHHHHh--CCCcEEEEEC
Confidence 346899998777775 57899999 9999999864
No 197
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=25.71 E-value=1e+02 Score=27.27 Aligned_cols=41 Identities=7% Similarity=-0.152 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhcCCCCCcEEEECCcch------hhHHHHHHcCCceEEEech
Q 011106 101 PAFKEVISSLINQGRPPLCIIADIFFG------WTCGVAKELNVFHAIFSGS 146 (493)
Q Consensus 101 ~~l~~~l~~~~~~~~~pDlvI~D~~~~------~~~~~A~~lgiP~i~~~~~ 146 (493)
..+.+++++.. ||+||+-.-+. -+..+|..||+|+++..+.
T Consensus 106 ~~La~~i~~~~-----~dlVl~G~~s~d~d~~~v~p~lA~~L~~~~vt~v~~ 152 (255)
T 1efv_B 106 RVLAKLAEKEK-----VDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQ 152 (255)
T ss_dssp HHHHHHHHHHT-----CSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHhcC-----CCEEEEeCcccCCchhhHHHHHHHHhCCCcccceEE
Confidence 45566666655 99999875442 5779999999999987543
No 198
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: YES; 1.60A {Streptomyces avermitilis}
Probab=25.71 E-value=82 Score=27.49 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhcCCCCCcEEEECCcch-------hhHHHHHHcCCceEEEe
Q 011106 101 PAFKEVISSLINQGRPPLCIIADIFFG-------WTCGVAKELNVFHAIFS 144 (493)
Q Consensus 101 ~~l~~~l~~~~~~~~~pDlvI~D~~~~-------~~~~~A~~lgiP~i~~~ 144 (493)
+.+.++++++. ..||+|++|.... -+..+.-.+++|+|.+.
T Consensus 95 P~ll~al~~L~---~~PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVA 142 (237)
T 3goc_A 95 PTVLAALDALP---CPPGLIVCDGYGVAHPRRFGLASHLGVLTGLPTIGVA 142 (237)
T ss_dssp HHHHHHHHTSS---SCCSEEEEESCSSCSTTSCCHHHHHHHHHCSCEEEEE
T ss_pred HHHHHHHHhcC---CCCCEEEEeCceeecCCCcchhheeeeecCCCEEeee
Confidence 56666667665 3499999995532 34567788899999984
No 199
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=25.69 E-value=56 Score=29.72 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=25.9
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVS 42 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~ 42 (493)
+||.|+-.+..|. .+|+.|.+ +||+|+++-
T Consensus 6 ~kIgfIGLG~MG~-----~mA~~L~~--~G~~V~v~d 35 (297)
T 4gbj_A 6 EKIAFLGLGNLGT-----PIAEILLE--AGYELVVWN 35 (297)
T ss_dssp CEEEEECCSTTHH-----HHHHHHHH--TTCEEEEC-
T ss_pred CcEEEEecHHHHH-----HHHHHHHH--CCCeEEEEe
Confidence 5899999998886 68999999 999999874
No 200
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=25.35 E-value=1e+02 Score=27.23 Aligned_cols=41 Identities=20% Similarity=-0.055 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhcCCCCCcEEEECCcch------hhHHHHHHcCCceEEEech
Q 011106 101 PAFKEVISSLINQGRPPLCIIADIFFG------WTCGVAKELNVFHAIFSGS 146 (493)
Q Consensus 101 ~~l~~~l~~~~~~~~~pDlvI~D~~~~------~~~~~A~~lgiP~i~~~~~ 146 (493)
..+.+++++.. ||+||+-.-+. -+..+|..||+|+++..+.
T Consensus 103 ~~La~~i~~~~-----~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~~ 149 (252)
T 1efp_B 103 KILAAVARAEG-----TELIIAGKQAIDNDMNATGQMLAAILGWAQATFASK 149 (252)
T ss_dssp HHHHHHHHHHT-----CSEEEEESCCTTTCCCCHHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHhcC-----CCEEEEcCCccCCchhhHHHHHHHHhCCCccccEEE
Confidence 45556666655 99999875442 5789999999999987543
No 201
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=25.34 E-value=1.7e+02 Score=25.77 Aligned_cols=39 Identities=13% Similarity=0.307 Sum_probs=29.9
Q ss_pred CcEEEEeccCCcCCCHHHHHHHHHHHHh--CCCcEEEEEcC
Q 011106 278 NSVLYISFGSMNTISASQMMQLAMALEA--SGKNFIWVVRP 316 (493)
Q Consensus 278 ~~~V~vs~GS~~~~~~~~~~~i~~al~~--~~~~vi~~~~~ 316 (493)
+.+|+|++||......+.+..+.+.+++ .+..|-|..-.
T Consensus 10 ~aillv~hGS~~~~~~~~~~~~~~~l~~~~~~~~V~~af~~ 50 (269)
T 2xvy_A 10 TGILLVAFGTSVEEARPALDKMGDRVRAAHPDIPVRWAYTA 50 (269)
T ss_dssp EEEEEEECCCCCTTTTHHHHHHHHHHHHHCTTSCEEEEESC
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHHHHHCCCCeEEeehhh
Confidence 5699999999876555678888888877 36788888654
No 202
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=25.29 E-value=18 Score=18.80 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=13.7
Q ss_pred CchhHHHHHHhCCcEec
Q 011106 372 GWNSVLEALIHGVPIIG 388 (493)
Q Consensus 372 G~gs~~eal~~GvP~l~ 388 (493)
|.|++...|..|.|.++
T Consensus 1 giGa~LKVLa~~LP~li 17 (26)
T 3qrx_B 1 GIGAVLKVLTTGLPALI 17 (26)
T ss_pred CchHHHHHHHccchHHH
Confidence 67888888888888664
No 203
>3pnx_A Putative sulfurtransferase DSRE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE GOL; 1.92A {Syntrophomonas wolfei}
Probab=25.29 E-value=1.6e+02 Score=23.86 Aligned_cols=43 Identities=9% Similarity=0.048 Sum_probs=33.9
Q ss_pred EEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 8 IVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 8 il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
.+++..+..=-+.|.+-||..-++ -|++|+++.+-.-...+.+
T Consensus 8 ~II~~sG~~dka~~a~ilA~~AaA--~G~eV~iFfTf~Gl~~l~K 50 (160)
T 3pnx_A 8 NLLLFSGDYDKALASLIIANAARE--MEIEVTIFCAFWGLLLLRD 50 (160)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHHH--TTCEEEEEECGGGGGGGBC
T ss_pred EEEEecCCHHHHHHHHHHHHHHHH--cCCCEEEEEeehhHHHhcc
Confidence 444445777788899999999888 9999999988766666665
No 204
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=25.06 E-value=43 Score=26.23 Aligned_cols=34 Identities=9% Similarity=0.175 Sum_probs=27.4
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
.+.||+++-++..|. .+|+.|.+ .||+|+++...
T Consensus 6 ~~~~viIiG~G~~G~-----~la~~L~~--~g~~v~vid~~ 39 (140)
T 3fwz_A 6 ICNHALLVGYGRVGS-----LLGEKLLA--SDIPLVVIETS 39 (140)
T ss_dssp CCSCEEEECCSHHHH-----HHHHHHHH--TTCCEEEEESC
T ss_pred CCCCEEEECcCHHHH-----HHHHHHHH--CCCCEEEEECC
Confidence 356899988766664 78999999 99999999754
No 205
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=25.02 E-value=1.2e+02 Score=26.53 Aligned_cols=37 Identities=11% Similarity=0.220 Sum_probs=26.9
Q ss_pred cEEEEECCCCcc-----------cHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 6 ENIVMFPFMAQG-----------HIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 6 ~~il~~~~~~~G-----------H~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
+||+++.....+ ...=+....+.|.+ .|++|+++++.
T Consensus 4 ~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~--ag~~v~~~s~~ 51 (243)
T 1rw7_A 4 KKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRK--EGFEVDFVSET 51 (243)
T ss_dssp CEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred ceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHH--CCCEEEEECCC
Confidence 578887754221 34557777788999 99999999864
No 206
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=24.95 E-value=3.7e+02 Score=24.12 Aligned_cols=108 Identities=7% Similarity=0.088 Sum_probs=0.0
Q ss_pred CCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc---chhhhhccCCCCCCceEEeccCCCCCCCCCCCC
Q 011106 2 AQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL---NIKKLKSSLPPNSSIDLHEIPFNSSSHGLPPNS 78 (493)
Q Consensus 2 ~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~---~~~~v~~~~~~~~~i~~~~i~~~~~~~~l~~~~ 78 (493)
+..++||+++..+. || -+.+|..+.....-..+|..+.+.. ..+..++ .+|.++.+|
T Consensus 86 ~~~~~ri~vl~Sg~-g~--nl~~ll~~~~~g~l~~~i~~Visn~p~~~~~~A~~-----~gIp~~~~~------------ 145 (288)
T 3obi_A 86 RETRRKVMLLVSQS-DH--CLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDF-----GDIPFYHFP------------ 145 (288)
T ss_dssp TTSCEEEEEEECSC-CH--HHHHHHHHHHTTSSCEEEEEEEESSCGGGSCCTTT-----TTCCEEECC------------
T ss_pred cCCCcEEEEEEcCC-CC--CHHHHHHHHHCCCCCeEEEEEEcCCChhHHHHHHH-----cCCCEEEeC------------
Q ss_pred CCCCCCChhhHHHHHHHHhhhhHHHHHHHHHhhcCCCCCcEEEECCcch-hhHHHHHHcCCceEEEech
Q 011106 79 ENCDVLPYNLVIHLLRASTSLKPAFKEVISSLINQGRPPLCIIADIFFG-WTCGVAKELNVFHAIFSGS 146 (493)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~-~~~~~A~~lgiP~i~~~~~ 146 (493)
... ..-......+.+.+++.. ||+||.-.|.. -...+-..+.-.++=+.++
T Consensus 146 -----------~~~-~~r~~~~~~~~~~l~~~~-----~Dlivlagy~~il~~~~l~~~~~~~iNiHpS 197 (288)
T 3obi_A 146 -----------VNK-DTRRQQEAAITALIAQTH-----TDLVVLARYMQILSDEMSARLAGRCINIHHS 197 (288)
T ss_dssp -----------CCT-TTHHHHHHHHHHHHHHHT-----CCEEEESSCCSCCCHHHHHHTTTSEEEEEEE
T ss_pred -----------CCc-ccHHHHHHHHHHHHHhcC-----CCEEEhhhhhhhCCHHHHhhhcCCeEEeCcc
No 207
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=24.81 E-value=92 Score=28.77 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEcCC
Q 011106 292 SASQMMQLAMALEASGKNFIWVVRPP 317 (493)
Q Consensus 292 ~~~~~~~i~~al~~~~~~vi~~~~~~ 317 (493)
+.+....+.+++.+...+.||.+.+.
T Consensus 63 d~~Ra~dL~~a~~Dp~i~aI~~~rGG 88 (327)
T 4h1h_A 63 IRSRVADIHEAFNDSSVKAILTVIGG 88 (327)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCc
Confidence 44567779999999999999998765
No 208
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=24.73 E-value=69 Score=26.71 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=26.3
Q ss_pred CCCCCcEEEEECCCCcccHHHHHH-HHHHHHhcCCCeEEEEEeC
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLA-LALHIEQRHKNYSITFVST 43 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~-LA~~L~~~~~Gh~Vt~~~~ 43 (493)
|. .++||+++-.. .|+..-+.. +++.|.+ .|++|.++.-
T Consensus 1 M~-~mmkilii~~S-~g~T~~la~~i~~~l~~--~g~~v~~~~l 40 (199)
T 2zki_A 1 MS-CKPNILVLFYG-YGSIVELAKEIGKGAEE--AGAEVKIRRV 40 (199)
T ss_dssp ---CCCEEEEEECC-SSHHHHHHHHHHHHHHH--HSCEEEEEEC
T ss_pred CC-CCcEEEEEEeC-ccHHHHHHHHHHHHHHh--CCCEEEEEeh
Confidence 54 34678887766 888766553 5566777 7999888753
No 209
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=24.68 E-value=47 Score=30.89 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=26.1
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
+++||+++-.+..|. .+|..|.+ .||+|+++..
T Consensus 3 ~~mki~iiG~G~~G~-----~~a~~L~~--~g~~V~~~~r 35 (359)
T 1bg6_A 3 ESKTYAVLGLGNGGH-----AFAAYLAL--KGQSVLAWDI 35 (359)
T ss_dssp -CCEEEEECCSHHHH-----HHHHHHHH--TTCEEEEECS
T ss_pred CcCeEEEECCCHHHH-----HHHHHHHh--CCCEEEEEeC
Confidence 457999998777774 47888999 9999998864
No 210
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=24.66 E-value=1.1e+02 Score=28.08 Aligned_cols=74 Identities=16% Similarity=0.212 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHHhhc-cCCcCceee
Q 011106 291 ISASQMMQLAMALEASGKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLEVLS-HRATCAFLS 369 (493)
Q Consensus 291 ~~~~~~~~i~~al~~~~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~lL~-~~~v~~~I~ 369 (493)
.+.+....+.+++.....+.||.+.+.. .-.++.++++...+-+ +|.+ ||=
T Consensus 64 td~~Ra~dL~~a~~Dp~i~aI~~~rGGy--------------------------ga~rlLp~LD~~~i~~a~PK~--~iG 115 (311)
T 1zl0_A 64 TVEQRLEDLHNAFDMPDITAVWCLRGGY--------------------------GCGQLLPGLDWGRLQAASPRP--LIG 115 (311)
T ss_dssp CHHHHHHHHHHHHHSTTEEEEEESCCSS--------------------------CGGGGTTTCCHHHHHHSCCCC--EEE
T ss_pred CHHHHHHHHHHHHhCCCCCEEEEccCCc--------------------------CHHHHhhccchhhhhccCCCE--EEE
Confidence 3456677799999999999999998763 1112345565555555 6666 777
Q ss_pred ccCchhHHHHHH-hCCcEeccccc
Q 011106 370 HCGWNSVLEALI-HGVPIIGWPMA 392 (493)
Q Consensus 370 HgG~gs~~eal~-~GvP~l~~P~~ 392 (493)
++-...++-+++ .|.+.+-=|+.
T Consensus 116 ySDiTaL~~al~~~G~~t~hGp~~ 139 (311)
T 1zl0_A 116 FSDISVLLSAFHRHGLPAIHGPVA 139 (311)
T ss_dssp CGGGHHHHHHHHHTTCCEEECCCG
T ss_pred EchhHHHHHHHHHcCCcEEECHhh
Confidence 777777777765 37766666653
No 211
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=24.58 E-value=68 Score=27.81 Aligned_cols=41 Identities=12% Similarity=-0.001 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhcCCCCCcEEEECCcch-------hhHHHHHHcCCceEEEe
Q 011106 101 PAFKEVISSLINQGRPPLCIIADIFFG-------WTCGVAKELNVFHAIFS 144 (493)
Q Consensus 101 ~~l~~~l~~~~~~~~~pDlvI~D~~~~-------~~~~~A~~lgiP~i~~~ 144 (493)
+.+.+.++++. ..||+|++|.... -+..+...+++|+|.+.
T Consensus 91 P~~l~al~~L~---~~PdlllvDG~Gi~HpR~~GlA~HlGv~l~~PtIGVA 138 (225)
T 2w36_A 91 PLFLKAWEKLR---TKPDVVVFDGQGLAHPRKLGIASHMGLFIEIPTIGVA 138 (225)
T ss_dssp HHHHHHHTTCC---SCCSEEEEESCSSSSTTSCCHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHHhcC---CCCCEEEEeCeEEEcCCCCCchhhhhhhhCCCEEEEE
Confidence 45555566655 3599999996543 23456777899999984
No 212
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=24.58 E-value=3e+02 Score=24.77 Aligned_cols=43 Identities=14% Similarity=0.154 Sum_probs=27.3
Q ss_pred cEEEEECCCCcc--c--HHHHHHHHHHHHhcCCCeEEEEE-eCccchhhh
Q 011106 6 ENIVMFPFMAQG--H--IIPFLALALHIEQRHKNYSITFV-STPLNIKKL 50 (493)
Q Consensus 6 ~~il~~~~~~~G--H--~~p~l~LA~~L~~~~~Gh~Vt~~-~~~~~~~~v 50 (493)
+.|++.|..+.. . ..-+.+|++.|.+ +|++|.++ .++...+..
T Consensus 179 ~~i~l~pga~~~~k~wp~~~~~~l~~~L~~--~~~~vvl~~g~~~e~~~~ 226 (326)
T 2gt1_A 179 EYAVFLHATTRDDKHWPEEHWRELIGLLAD--SGIRIKLPWGAPHEEERA 226 (326)
T ss_dssp SEEEEECCCSSGGGSCCHHHHHHHHHHTTT--TCCEEEECCSSHHHHHHH
T ss_pred CEEEEEeCCCCccccCCHHHHHHHHHHHHH--CCCcEEEecCCHHHHHHH
Confidence 457777654321 1 2358899999988 89998886 444343333
No 213
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=24.52 E-value=64 Score=30.43 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=27.3
Q ss_pred CCcEEEEECCCCcc-c---HHHHHHHHHHH-HhcCCCeEEEEEe
Q 011106 4 SKENIVMFPFMAQG-H---IIPFLALALHI-EQRHKNYSITFVS 42 (493)
Q Consensus 4 ~~~~il~~~~~~~G-H---~~p~l~LA~~L-~~~~~Gh~Vt~~~ 42 (493)
+++||+++..+-.+ | +.....++++| .+ +||+|+.+-
T Consensus 2 ~k~~v~vl~gG~s~E~~vSl~s~~~v~~al~~~--~g~~v~~i~ 43 (377)
T 1ehi_A 2 TKKRVALIFGGNSSEHDVSKRSAQNFYNAIEAT--GKYEIIVFA 43 (377)
T ss_dssp -CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHH--SSEEEEEEE
T ss_pred CCcEEEEEeCCCCCCcceeHHHHHHHHHHhCcc--cCcEEEEEE
Confidence 46789988755333 3 23467889999 99 999999885
No 214
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=24.41 E-value=61 Score=27.39 Aligned_cols=42 Identities=7% Similarity=0.083 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhcCCCCCcEEEECCcchhhHHHHHHcCCceEEEechh
Q 011106 101 PAFKEVISSLINQGRPPLCIIADIFFGWTCGVAKELNVFHAIFSGSG 147 (493)
Q Consensus 101 ~~l~~~l~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~i~~~~~~ 147 (493)
.++++.+++++.+ ++|+||.+. .+..+|+++|+|.+.+.+..
T Consensus 129 ~e~~~~i~~l~~~--G~~vvVG~~---~~~~~A~~~Gl~~vli~sg~ 170 (196)
T 2q5c_A 129 DEITTLISKVKTE--NIKIVVSGK---TVTDEAIKQGLYGETINSGE 170 (196)
T ss_dssp GGHHHHHHHHHHT--TCCEEEECH---HHHHHHHHTTCEEEECCCCH
T ss_pred HHHHHHHHHHHHC--CCeEEECCH---HHHHHHHHcCCcEEEEecCH
Confidence 3455666666533 499999995 36899999999999987743
No 215
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=24.17 E-value=43 Score=30.83 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=27.3
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCC-eEEEEEeC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKN-YSITFVST 43 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~G-h~Vt~~~~ 43 (493)
+.++|.|+-.+..| ..+|+.|.+ .| |+|+++..
T Consensus 23 M~m~IgvIG~G~mG-----~~lA~~L~~--~G~~~V~~~dr 56 (317)
T 4ezb_A 23 MMTTIAFIGFGEAA-----QSIAGGLGG--RNAARLAAYDL 56 (317)
T ss_dssp SCCEEEEECCSHHH-----HHHHHHHHT--TTCSEEEEECG
T ss_pred cCCeEEEECccHHH-----HHHHHHHHH--cCCCeEEEEeC
Confidence 45789999887777 578999999 99 99998853
No 216
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=24.14 E-value=1.7e+02 Score=27.43 Aligned_cols=129 Identities=12% Similarity=0.140 Sum_probs=0.0
Q ss_pred CCCCCcEEEEeccCCcCCCHHHHHHHHHHHHhC--CCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEee
Q 011106 274 SKDENSVLYISFGSMNTISASQMMQLAMALEAS--GKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKN 351 (493)
Q Consensus 274 ~~~~~~~V~vs~GS~~~~~~~~~~~i~~al~~~--~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~ 351 (493)
..++-.|+.|+.| +. +.-+.++.+. +..++.++..+ ..-...+.++.+ +.-
T Consensus 4 ~~~~~rv~VvG~G-~g-------~~h~~a~~~~~~~~elvav~~~~------------~~~a~~~a~~~g-------v~~ 56 (372)
T 4gmf_A 4 ASPKQRVLIVGAK-FG-------EMYLNAFMQPPEGLELVGLLAQG------------SARSRELAHAFG-------IPL 56 (372)
T ss_dssp ---CEEEEEECST-TT-------HHHHHTTSSCCTTEEEEEEECCS------------SHHHHHHHHHTT-------CCE
T ss_pred CCCCCEEEEEehH-HH-------HHHHHHHHhCCCCeEEEEEECCC------------HHHHHHHHHHhC-------CCE
Q ss_pred ccChHHhhccCCcCceee----ccCchh--HHHHHHhCCcEec-ccccccchhhHHHHhhhhceeEEeecCCCCccCHHH
Q 011106 352 WAPQLEVLSHRATCAFLS----HCGWNS--VLEALIHGVPIIG-WPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHED 424 (493)
Q Consensus 352 ~~pq~~lL~~~~v~~~I~----HgG~gs--~~eal~~GvP~l~-~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~ 424 (493)
|-...+++...++.++++ |++.+. +.++|.+|++++| -|+..|+-.-..+++++-|+=..+.. ...-...
T Consensus 57 ~~~~~~l~~~~D~v~i~~p~~~h~~~~~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~g~~~~v~~---~yr~~p~ 133 (372)
T 4gmf_A 57 YTSPEQITGMPDIACIVVRSTVAGGAGTQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQGCCYWINT---FYPHTRA 133 (372)
T ss_dssp ESSGGGCCSCCSEEEECCC--CTTSHHHHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHHTCCEEEEC---SGGGSHH
T ss_pred ECCHHHHhcCCCEEEEECCCcccchhHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHcCCEEEEcC---cccCCHH
Q ss_pred HHHHHHHH
Q 011106 425 VVAKIELV 432 (493)
Q Consensus 425 l~~ai~~~ 432 (493)
+++.+...
T Consensus 134 vr~~i~~~ 141 (372)
T 4gmf_A 134 GRTWLRDA 141 (372)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 217
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=24.13 E-value=61 Score=29.64 Aligned_cols=34 Identities=9% Similarity=0.092 Sum_probs=27.5
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLN 46 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~ 46 (493)
+++|+++..+ ....+++++.+ .||+|.++.....
T Consensus 2 ~m~Ililg~g------~~~~l~~a~~~--~G~~v~~~~~~~~ 35 (334)
T 2r85_A 2 KVRIATYASH------SALQILKGAKD--EGFETIAFGSSKV 35 (334)
T ss_dssp CSEEEEESST------THHHHHHHHHH--TTCCEEEESCGGG
T ss_pred ceEEEEECCh------hHHHHHHHHHh--CCCEEEEEECCCC
Confidence 4789998866 46789999999 9999999876543
No 218
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=24.12 E-value=81 Score=21.90 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=31.9
Q ss_pred hCCcEecccccccchhhHH---HHhhhhceeEEeecCCCCccCHHHHHHHHHHHhc
Q 011106 382 HGVPIIGWPMAAEQFFNAK---FLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMN 434 (493)
Q Consensus 382 ~GvP~l~~P~~~DQ~~na~---~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~ 434 (493)
+|+|+++.--...|-+... ...+. |+...+-+ +.++++|.+.+++.|.
T Consensus 50 ngkplvvfvngasqndvnefqneakke-gvsydvlk----stdpeeltqrvreflk 100 (112)
T 2lnd_A 50 NGKPLVVFVNGASQNDVNEFQNEAKKE-GVSYDVLK----STDPEELTQRVREFLK 100 (112)
T ss_dssp CCSCEEEEECSCCHHHHHHHHHHHHHH-TCEEEEEE----CCCHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcccccHHHHHHHHHhc-Ccchhhhc----cCCHHHHHHHHHHHHH
Confidence 5788877766555544211 12234 77777764 6789999999988874
No 219
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=23.95 E-value=1.5e+02 Score=28.51 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=23.8
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
++||+++.. | ...+.+++++++ .|++|.++.+
T Consensus 2 ~k~ilI~g~---g--~~~~~~~~a~~~--~G~~vv~v~~ 33 (449)
T 2w70_A 2 LDKIVIANR---G--EIALRILRACKE--LGIKTVAVHS 33 (449)
T ss_dssp CSEEEECCC---H--HHHHHHHHHHHH--HTCEEEEEEE
T ss_pred CceEEEeCC---c--HHHHHHHHHHHH--cCCeEEEEec
Confidence 357877653 3 245689999999 9999988864
No 220
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=23.90 E-value=46 Score=32.94 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=27.3
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
.|+||+++-.+..| +.+|+.|.+ +|++||++...
T Consensus 41 ~KprVVIIGgG~AG-----l~~A~~L~~--~~~~VtLId~~ 74 (502)
T 4g6h_A 41 DKPNVLILGSGWGA-----ISFLKHIDT--KKYNVSIISPR 74 (502)
T ss_dssp SSCEEEEECSSHHH-----HHHHHHSCT--TTCEEEEEESS
T ss_pred CCCCEEEECCcHHH-----HHHHHHhhh--CCCcEEEECCC
Confidence 36799999866555 578899988 99999999754
No 221
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=23.73 E-value=94 Score=28.84 Aligned_cols=26 Identities=8% Similarity=-0.003 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEcCC
Q 011106 292 SASQMMQLAMALEASGKNFIWVVRPP 317 (493)
Q Consensus 292 ~~~~~~~i~~al~~~~~~vi~~~~~~ 317 (493)
+.+....+.+++.....+.||.+.+.
T Consensus 64 d~~Ra~dL~~a~~Dp~i~aI~~~rGG 89 (336)
T 3sr3_A 64 IQERAKELNALIRNPNVSCIMSTIGG 89 (336)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred HHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 44567779999999999999998776
No 222
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=23.20 E-value=99 Score=24.52 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=24.9
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
.++|+++-.+..| ..+|+.|.+ .|++|+++...
T Consensus 19 ~~~v~IiG~G~iG-----~~la~~L~~--~g~~V~vid~~ 51 (155)
T 2g1u_A 19 SKYIVIFGCGRLG-----SLIANLASS--SGHSVVVVDKN 51 (155)
T ss_dssp CCEEEEECCSHHH-----HHHHHHHHH--TTCEEEEEESC
T ss_pred CCcEEEECCCHHH-----HHHHHHHHh--CCCeEEEEECC
Confidence 4688888654444 457899999 99999998643
No 223
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=23.19 E-value=98 Score=28.89 Aligned_cols=29 Identities=10% Similarity=0.205 Sum_probs=21.1
Q ss_pred cCCcCceeec-cCchhHHHHHHhCCcEecccc
Q 011106 361 HRATCAFLSH-CGWNSVLEALIHGVPIIGWPM 391 (493)
Q Consensus 361 ~~~v~~~I~H-gG~gs~~eal~~GvP~l~~P~ 391 (493)
++++ +|+| .++.....|-..|+|.+.+-.
T Consensus 114 ~PD~--Vv~~~~~~~~~~aa~~~giP~v~~~~ 143 (391)
T 3tsa_A 114 RPSV--LLVDVCALIGRVLGGLLDLPVVLHRW 143 (391)
T ss_dssp CCSE--EEEETTCHHHHHHHHHTTCCEEEECC
T ss_pred CCCE--EEeCcchhHHHHHHHHhCCCEEEEec
Confidence 4665 6666 566667777889999988744
No 224
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B
Probab=22.98 E-value=3.5e+02 Score=22.93 Aligned_cols=38 Identities=8% Similarity=0.066 Sum_probs=28.4
Q ss_pred CCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 2 AQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 2 ~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
..++.|+++++. +-.|....--..|.+ +|++|.=+.+.
T Consensus 22 p~~~Lr~avVCa---SN~NRSMEAH~~L~k--~Gf~V~SfGTG 59 (214)
T 4h3k_B 22 PSSPLRVAVVSS---SNQNRSMEAHNILSK--RGFSVRSFGTG 59 (214)
T ss_dssp ----CEEEEEES---SSSSHHHHHHHHHHH--TTCEEEEEECS
T ss_pred CCCCCeEEEECC---CCcchhHHHHHHHHH--CCCceEeecCC
Confidence 334678888884 567888888899999 99999888766
No 225
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=22.94 E-value=2.5e+02 Score=26.01 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=23.9
Q ss_pred cEEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEc
Q 011106 279 SVLYISFGSMNTISASQMMQLAMALEASGKNFIWVVR 315 (493)
Q Consensus 279 ~~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~ 315 (493)
.++++++|+.. .-.-+..++.+|.+.|++|.+.+.
T Consensus 6 ~il~~~~~~~G--hv~~~~~La~~L~~~GheV~v~~~ 40 (402)
T 3ia7_A 6 HILFANVQGHG--HVYPSLGLVSELARRGHRITYVTT 40 (402)
T ss_dssp EEEEECCSSHH--HHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEEeCCCCc--ccccHHHHHHHHHhCCCEEEEEcC
Confidence 37777776432 223455588888888999888774
No 226
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=22.94 E-value=1.8e+02 Score=22.37 Aligned_cols=42 Identities=7% Similarity=-0.149 Sum_probs=29.5
Q ss_pred EEECCCCc--ccHHHHHHHHHHHHhcCCCeEE-EEEeCccchhhhhc
Q 011106 9 VMFPFMAQ--GHIIPFLALALHIEQRHKNYSI-TFVSTPLNIKKLKS 52 (493)
Q Consensus 9 l~~~~~~~--GH~~p~l~LA~~L~~~~~Gh~V-t~~~~~~~~~~v~~ 52 (493)
+++..+.+ -.....+.+|..+.+ .||+| .++-.........+
T Consensus 5 iiv~~~p~~~~~~~~al~~a~a~~~--~g~~v~~vff~~dGV~~~~~ 49 (130)
T 2hy5_A 5 LQINEGPYQHQASDSAYQFAKAALE--KGHEIFRVFFYHDGVNNSTR 49 (130)
T ss_dssp EEECSCTTTSTHHHHHHHHHHHHHH--TTCEEEEEEECGGGGGGGBS
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHh--cCCeeCEEEEechHHHHHhc
Confidence 33444444 446678999999999 99999 88887755555443
No 227
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=22.90 E-value=43 Score=30.35 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=0.0
Q ss_pred CceeeccCchhHHHHHHh----CCcEeccc
Q 011106 365 CAFLSHCGWNSVLEALIH----GVPIIGWP 390 (493)
Q Consensus 365 ~~~I~HgG~gs~~eal~~----GvP~l~~P 390 (493)
+++|.=||=||+.+++.. ++|++.++
T Consensus 65 D~vi~~GGDGT~l~a~~~~~~~~~P~lGI~ 94 (292)
T 2an1_A 65 DLAVVVGGDGNMLGAARTLARYDINVIGIN 94 (292)
T ss_dssp SEEEECSCHHHHHHHHHHHTTSSCEEEEBC
T ss_pred CEEEEEcCcHHHHHHHHHhhcCCCCEEEEE
No 228
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=22.90 E-value=4.1e+02 Score=24.17 Aligned_cols=109 Identities=15% Similarity=0.160 Sum_probs=58.0
Q ss_pred cEEEEeccCCcCCCHHHHHHHHHHHHhC-CCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHH
Q 011106 279 SVLYISFGSMNTISASQMMQLAMALEAS-GKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLE 357 (493)
Q Consensus 279 ~~V~vs~GS~~~~~~~~~~~i~~al~~~-~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~ 357 (493)
.+.+|+.|.+. ...+.++... +..++.+...+. .. ...+.. .-++ .-+-...+
T Consensus 6 rvgiiG~G~~g-------~~~~~~l~~~~~~~l~av~d~~~-------~~-----~~~~a~-----~~g~--~~~~~~~~ 59 (344)
T 3euw_A 6 RIALFGAGRIG-------HVHAANIAANPDLELVVIADPFI-------EG-----AQRLAE-----ANGA--EAVASPDE 59 (344)
T ss_dssp EEEEECCSHHH-------HHHHHHHHHCTTEEEEEEECSSH-------HH-----HHHHHH-----TTTC--EEESSHHH
T ss_pred EEEEECCcHHH-------HHHHHHHHhCCCcEEEEEECCCH-------HH-----HHHHHH-----HcCC--ceeCCHHH
Confidence 37788888764 2355566664 555555554321 00 011111 1122 23456688
Q ss_pred hhccCCcCceeeccCch----hHHHHHHhCCcEec-ccccc--cchhh-HHHHhhhhceeEEeec
Q 011106 358 VLSHRATCAFLSHCGWN----SVLEALIHGVPIIG-WPMAA--EQFFN-AKFLEQEMGVCVEVAR 414 (493)
Q Consensus 358 lL~~~~v~~~I~HgG~g----s~~eal~~GvP~l~-~P~~~--DQ~~n-a~~v~~~lG~G~~~~~ 414 (493)
+|..+++++++.---.. -+.+++.+|+++++ -|+.. ++-.- .+.+++. |+-+.+..
T Consensus 60 ~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~-g~~~~v~~ 123 (344)
T 3euw_A 60 VFARDDIDGIVIGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIGDG-ASKVMLGF 123 (344)
T ss_dssp HTTCSCCCEEEECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGGG-GGGEEECC
T ss_pred HhcCCCCCEEEEeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHhc-CCeEEecc
Confidence 88866666676544433 36678999999887 36543 33332 2333333 66555543
No 229
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=22.85 E-value=4.4e+02 Score=24.05 Aligned_cols=38 Identities=13% Similarity=0.071 Sum_probs=25.7
Q ss_pred CcEEEEeccCCcCCCH-HHHHHHHHHHHhCCCcEEEEEcC
Q 011106 278 NSVLYISFGSMNTISA-SQMMQLAMALEASGKNFIWVVRP 316 (493)
Q Consensus 278 ~~~V~vs~GS~~~~~~-~~~~~i~~al~~~~~~vi~~~~~ 316 (493)
++++.++ |......- .+...++.-+++.+++-|+.+++
T Consensus 102 ~~~lll~-gpeP~~~w~~f~~~vl~~a~~~gV~~vv~Lgg 140 (319)
T 2p90_A 102 KPFLMLS-GPEPDLRWGDFSNAVVDLVEKFGVENTICLYA 140 (319)
T ss_dssp CEEEEEE-EECCSBCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CeEEEEE-CCCChHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 3455555 66555444 45566888888999988887754
No 230
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=22.84 E-value=2.7e+02 Score=23.80 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=29.4
Q ss_pred eEEeeccCh-HHhhccCCcCceeeccCchhHHHHH---------HhCCcEecccc
Q 011106 347 LLMKNWAPQ-LEVLSHRATCAFLSHCGWNSVLEAL---------IHGVPIIGWPM 391 (493)
Q Consensus 347 v~~~~~~pq-~~lL~~~~v~~~I~HgG~gs~~eal---------~~GvP~l~~P~ 391 (493)
..+....++ ..++..-+-..++--||.||+-|.. .+++|++++-.
T Consensus 93 ~~~~~~f~~Rk~~~~~~sda~VvlpGG~GTLdElfE~lt~~qlg~~~kPvvll~~ 147 (215)
T 2a33_A 93 VRAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 147 (215)
T ss_dssp EEEESSHHHHHHHHHHTCSEEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECG
T ss_pred eeecCCHHHHHHHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhCCCCCCeEEecC
Confidence 345555565 4444443334677889999987765 24899998864
No 231
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=22.78 E-value=1e+02 Score=25.64 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=25.2
Q ss_pred cEEEEECCCCcccHHHHH-HHHHHHHhcCCCeEEEEEeC
Q 011106 6 ENIVMFPFMAQGHIIPFL-ALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l-~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
+||+++-....|+..-+. .+++.|.+ .|++|.++.-
T Consensus 6 ~kilii~~S~~g~T~~la~~i~~~l~~--~g~~v~~~~l 42 (200)
T 2a5l_A 6 PYILVLYYSRHGATAEMARQIARGVEQ--GGFEARVRTV 42 (200)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHH--TTCEEEEEBC
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHhh--CCCEEEEEEh
Confidence 467666655578876655 45677777 8999988753
No 232
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=22.73 E-value=80 Score=28.83 Aligned_cols=39 Identities=5% Similarity=0.156 Sum_probs=28.7
Q ss_pred CCCCCcEEEEECCCCcccHHH-HHHHHHHHHhcCCCeEEEEEe
Q 011106 1 MAQSKENIVMFPFMAQGHIIP-FLALALHIEQRHKNYSITFVS 42 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p-~l~LA~~L~~~~~Gh~Vt~~~ 42 (493)
|+ +++||+++.-+..++... ...+.+.|.+ +|++|.+..
T Consensus 1 m~-~m~ki~iI~n~~~~~~~~~~~~l~~~L~~--~g~~v~~~~ 40 (307)
T 1u0t_A 1 MT-AHRSVLLVVHTGRDEATETARRVEKVLGD--NKIALRVLS 40 (307)
T ss_dssp -----CEEEEEESSSGGGGSHHHHHHHHHHHT--TTCEEEEEC
T ss_pred CC-CCCEEEEEEeCCCHHHHHHHHHHHHHHHH--CCCEEEEec
Confidence 66 346899999998887654 6678889999 999988764
No 233
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=22.52 E-value=82 Score=26.42 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=20.7
Q ss_pred HhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 402 LEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 402 v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
.++.-|||+. +|+++|.++|.+++...
T Consensus 107 Fe~~cGVGV~--------VT~EqI~~~V~~~i~~~ 133 (187)
T 3tl4_X 107 MNENSGVGIE--------ITEDQVRNYVMQYIQEN 133 (187)
T ss_dssp HHHTTTTTCC--------CCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCeE--------eCHHHHHHHHHHHHHHh
Confidence 4445588866 48899999999999653
No 234
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=22.42 E-value=85 Score=25.94 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=26.6
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
|+.++++|+++...++=.. =++.-.+.|.+ .|++|++++..
T Consensus 4 m~~t~~~v~il~~~gFe~~-E~~~p~~~l~~--ag~~V~~~s~~ 44 (177)
T 4hcj_A 4 MGKTNNILYVMSGQNFQDE-EYFESKKIFES--AGYKTKVSSTF 44 (177)
T ss_dssp -CCCCEEEEECCSEEECHH-HHHHHHHHHHH--TTCEEEEEESS
T ss_pred cccCCCEEEEECCCCccHH-HHHHHHHHHHH--CCCEEEEEECC
Confidence 5644555555554444333 35667788899 99999999865
No 235
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=22.24 E-value=53 Score=30.71 Aligned_cols=38 Identities=11% Similarity=0.013 Sum_probs=25.6
Q ss_pred CCCcEEEEECCC-CcccH---HHHHHHHHHHHhcCCCeEEEEEe
Q 011106 3 QSKENIVMFPFM-AQGHI---IPFLALALHIEQRHKNYSITFVS 42 (493)
Q Consensus 3 ~~~~~il~~~~~-~~GH~---~p~l~LA~~L~~~~~Gh~Vt~~~ 42 (493)
|+++||+++..| +.=|= ....+++++|.+ .||+|..+.
T Consensus 1 M~kkkv~vl~GG~S~E~evSl~Sa~~v~~aL~~--~gy~v~~i~ 42 (357)
T 4fu0_A 1 MQNKKIAVIFGGNSTEYEVSLQSASAVFENINT--NKFDIIPIG 42 (357)
T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCT--TTEEEEEEE
T ss_pred CCCCEEEEEECCCccchHHHHHHHHHHHHHHhH--hCCEEEEEE
Confidence 446789888543 33343 234568899999 999998873
No 236
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=22.19 E-value=1.5e+02 Score=21.99 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=26.0
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
|+|++.+|+++- .|-.-...|...|.. .|++|..+.+
T Consensus 1 m~m~~~~ilivd----d~~~~~~~l~~~L~~--~g~~v~~~~~ 37 (132)
T 2rdm_A 1 MSLEAVTILLAD----DEAILLLDFESTLTD--AGFLVTAVSS 37 (132)
T ss_dssp -CCSSCEEEEEC----SSHHHHHHHHHHHHH--TTCEEEEESS
T ss_pred CCCCCceEEEEc----CcHHHHHHHHHHHHH--cCCEEEEECC
Confidence 777778998885 344455677788888 8998876543
No 237
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=22.17 E-value=87 Score=24.14 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=20.1
Q ss_pred CcEEEECCcch--hhHHHHHHc---------CCceEEEechh
Q 011106 117 PLCIIADIFFG--WTCGVAKEL---------NVFHAIFSGSG 147 (493)
Q Consensus 117 pDlvI~D~~~~--~~~~~A~~l---------giP~i~~~~~~ 147 (493)
||+||.|...+ -+..+.+.+ .+|.+.++...
T Consensus 59 ~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~ 100 (143)
T 3m6m_D 59 YDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADV 100 (143)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCC
Confidence 99999997654 344444333 37888876543
No 238
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=21.99 E-value=3.2e+02 Score=25.21 Aligned_cols=127 Identities=13% Similarity=0.123 Sum_probs=0.0
Q ss_pred cEEEEeccCCcCCCHHHHHHHHHHHHhC-CCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHH
Q 011106 279 SVLYISFGSMNTISASQMMQLAMALEAS-GKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLE 357 (493)
Q Consensus 279 ~~V~vs~GS~~~~~~~~~~~i~~al~~~-~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~ 357 (493)
.+..|++|.+. ...+.++... +..++.+...+. -......+.. +.-|-...+
T Consensus 7 ~vgiiG~G~~g-------~~~~~~l~~~~~~~l~av~d~~~-------------~~~~~a~~~g-------~~~~~~~~~ 59 (359)
T 3e18_A 7 QLVIVGYGGMG-------SYHVTLASAADNLEVHGVFDILA-------------EKREAAAQKG-------LKIYESYEA 59 (359)
T ss_dssp EEEEECCSHHH-------HHHHHHHHTSTTEEEEEEECSSH-------------HHHHHHHTTT-------CCBCSCHHH
T ss_pred cEEEECcCHHH-------HHHHHHHHhCCCcEEEEEEcCCH-------------HHHHHHHhcC-------CceeCCHHH
Q ss_pred hhccCCcCceeeccCchh----HHHHHHhCCcEec---ccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHH
Q 011106 358 VLSHRATCAFLSHCGWNS----VLEALIHGVPIIG---WPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIE 430 (493)
Q Consensus 358 lL~~~~v~~~I~HgG~gs----~~eal~~GvP~l~---~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~ 430 (493)
+|..+++++++--.-... +.++|.+|++++| +-...++-.-...++++-|+-+.+.. ...-.-..+.++
T Consensus 60 ll~~~~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~----~~r~~p~~~~~k 135 (359)
T 3e18_A 60 VLADEKVDAVLIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVHQ----NRRWDEDFLIIK 135 (359)
T ss_dssp HHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEEC----GGGGCHHHHHHH
T ss_pred HhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeEEEEe----eeccCHHHHHHH
Q ss_pred HHhcCC
Q 011106 431 LVMNET 436 (493)
Q Consensus 431 ~~l~~~ 436 (493)
+++.+.
T Consensus 136 ~~i~~g 141 (359)
T 3e18_A 136 EMFEQK 141 (359)
T ss_dssp HHHHHT
T ss_pred HHHHcC
No 239
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=21.85 E-value=1.4e+02 Score=29.31 Aligned_cols=44 Identities=14% Similarity=0.038 Sum_probs=29.9
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccchhhhhccCC
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLNIKKLKSSLP 55 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~~~~ 55 (493)
++|-+|++. .+=.-++.+|+.|.+ .|++|. ++.-....+++.|.
T Consensus 9 ~i~~aLISV---sDK~glvelAk~L~~--lGfeI~--ATgGTak~L~e~GI 52 (523)
T 3zzm_A 9 PIRRALISV---YDKTGLVDLAQGLSA--AGVEII--STGSTAKTIADTGI 52 (523)
T ss_dssp CCCEEEEEE---SSCTTHHHHHHHHHH--TTCEEE--ECHHHHHHHHTTTC
T ss_pred cccEEEEEE---eccccHHHHHHHHHH--CCCEEE--EcchHHHHHHHcCC
Confidence 344455555 345568899999999 999875 45556677777443
No 240
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=21.81 E-value=4.4e+02 Score=23.65 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=13.9
Q ss_pred HHHHHHhCCCcEEEEEcC
Q 011106 299 LAMALEASGKNFIWVVRP 316 (493)
Q Consensus 299 i~~al~~~~~~vi~~~~~ 316 (493)
++.+++.++.+|+++.+-
T Consensus 126 LLr~va~~gkPVilK~G~ 143 (285)
T 3sz8_A 126 LVVAIAKAGKPVNVKKPQ 143 (285)
T ss_dssp HHHHHHHTSSCEEEECCT
T ss_pred HHHHHHccCCcEEEeCCC
Confidence 566666788999988875
No 241
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=21.74 E-value=72 Score=27.53 Aligned_cols=37 Identities=11% Similarity=-0.063 Sum_probs=32.0
Q ss_pred cEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 6 ENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 6 ~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
|||+|..-++-|=..-...||..|.+ +|++|.++-..
T Consensus 1 mkI~vs~kGGvGKTt~a~~LA~~la~--~g~~VlliD~D 37 (254)
T 3kjh_A 1 MKLAVAGKGGVGKTTVAAGLIKIMAS--DYDKIYAVDGD 37 (254)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHTT--TCSCEEEEEEC
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 46888777899999999999999999 99999998543
No 242
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=21.62 E-value=1.3e+02 Score=24.38 Aligned_cols=46 Identities=11% Similarity=0.066 Sum_probs=32.3
Q ss_pred hhhhHHHHHHHHHhhcCCCCCcEEEECCcch--------------h-hHHHHHHcCCceEEEechh
Q 011106 97 TSLKPAFKEVISSLINQGRPPLCIIADIFFG--------------W-TCGVAKELNVFHAIFSGSG 147 (493)
Q Consensus 97 ~~~~~~l~~~l~~~~~~~~~pDlvI~D~~~~--------------~-~~~~A~~lgiP~i~~~~~~ 147 (493)
......+.+++++.+ ||.+..+..++ . ...++...|+|+..+.+..
T Consensus 45 ~~i~~~l~~~i~~~~-----Pd~vaiE~vf~~~n~~s~~~lgqarGv~~~a~~~~~ipv~eytp~~ 105 (158)
T 1hjr_A 45 KLIYAGVTEIITQFQ-----PDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQ 105 (158)
T ss_dssp HHHHHHHHHHHHHHC-----CSEEEEEECCCCCCTTTHHHHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred HHHHHHHHHHHHHcC-----CCEEEEeecccccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 455577888999988 99997773321 1 1346677899999887653
No 243
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=21.57 E-value=41 Score=30.82 Aligned_cols=52 Identities=23% Similarity=0.347 Sum_probs=35.9
Q ss_pred CceeeccCchhHHHHHHh----CCcEecccccccchhhHHHHhhhhceeEEeecCCCCccCHHHHHHHHHHHhcCC
Q 011106 365 CAFLSHCGWNSVLEALIH----GVPIIGWPMAAEQFFNAKFLEQEMGVCVEVARGKTCEVKHEDVVAKIELVMNET 436 (493)
Q Consensus 365 ~~~I~HgG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~lG~G~~~~~~~~~~~~~~~l~~ai~~~l~~~ 436 (493)
+++|.-||=||+.+++.. ++|++.++.. .+|. + ..+.++++.++++.+++..
T Consensus 77 d~vi~~GGDGT~l~a~~~~~~~~~pvlgi~~G------------~~gf---l-----~~~~~~~~~~~~~~i~~g~ 132 (307)
T 1u0t_A 77 ELVLVLGGDGTFLRAAELARNASIPVLGVNLG------------RIGF---L-----AEAEAEAIDAVLEHVVAQD 132 (307)
T ss_dssp CCEEEEECHHHHHHHHHHHHHHTCCEEEEECS------------SCCS---S-----CSEEGGGHHHHHHHHHHTC
T ss_pred CEEEEEeCCHHHHHHHHHhccCCCCEEEEeCC------------CCcc---C-----cccCHHHHHHHHHHHHcCC
Confidence 459999999999999765 8999998742 1121 1 1234567777887777654
No 244
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=21.53 E-value=2.7e+02 Score=25.31 Aligned_cols=30 Identities=7% Similarity=-0.125 Sum_probs=19.1
Q ss_pred CcEEEECCcch---hhHHHHHHcCCceEEEech
Q 011106 117 PLCIIADIFFG---WTCGVAKELNVFHAIFSGS 146 (493)
Q Consensus 117 pDlvI~D~~~~---~~~~~A~~lgiP~i~~~~~ 146 (493)
+|.||.-.... .....+...|||+|.+...
T Consensus 63 vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~ 95 (350)
T 3h75_A 63 PDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSP 95 (350)
T ss_dssp CSEEEEECCSSHHHHHHHHHTTSCCEEEEEESC
T ss_pred CCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCC
Confidence 99988754221 2233455679999998543
No 245
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=21.29 E-value=98 Score=31.19 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=35.5
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcc
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPL 45 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~ 45 (493)
+.+|++.+.++-.|-....-++..|.. +|++|..+....
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~--~G~eVi~LG~~v 136 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQC--NNYEIVDLGVMV 136 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHT--TTCEEEECCSSB
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHH--CCCEEEECCCCC
Confidence 679999999999999999999999999 999999987543
No 246
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=21.23 E-value=69 Score=27.47 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=22.6
Q ss_pred CCCCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 1 MAQSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 1 m~~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
|+.+. +.++++.++ |-+ -.++++.|.+ +||+|+++.-
T Consensus 1 M~~~~-k~vlVtGas-ggi--G~~~a~~l~~--~G~~V~~~~r 37 (234)
T 2ehd_A 1 MEGMK-GAVLITGAS-RGI--GEATARLLHA--KGYRVGLMAR 37 (234)
T ss_dssp ---CC-CEEEESSTT-SHH--HHHHHHHHHH--TTCEEEEEES
T ss_pred CCCCC-CEEEEECCC-cHH--HHHHHHHHHH--CCCEEEEEEC
Confidence 66333 445555333 322 3588999999 9999988764
No 247
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=21.05 E-value=85 Score=28.55 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=27.2
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVS 42 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~ 42 (493)
++||.|+-.+..|. .+|+.|.+ +||+|+++-
T Consensus 3 M~kIgfIGlG~MG~-----~mA~~L~~--~G~~v~v~d 33 (300)
T 3obb_A 3 MKQIAFIGLGHMGA-----PMATNLLK--AGYLLNVFD 33 (300)
T ss_dssp CCEEEEECCSTTHH-----HHHHHHHH--TTCEEEEEC
T ss_pred cCEEEEeeehHHHH-----HHHHHHHh--CCCeEEEEc
Confidence 46899999999886 68999999 999999984
No 248
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=20.99 E-value=60 Score=28.83 Aligned_cols=51 Identities=14% Similarity=0.198 Sum_probs=31.7
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeCccc-hhhhhccCCCCCCceEEecc
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVSTPLN-IKKLKSSLPPNSSIDLHEIP 66 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~~~-~~~v~~~~~~~~~i~~~~i~ 66 (493)
|++||+++- + |.+= .+|++.|.+ +||+|+.++-... ...+.. .+++++..+
T Consensus 4 m~~~ilVtG--a-G~iG--~~l~~~L~~--~g~~V~~~~r~~~~~~~~~~-----~~~~~~~~D 55 (286)
T 3ius_A 4 MTGTLLSFG--H-GYTA--RVLSRALAP--QGWRIIGTSRNPDQMEAIRA-----SGAEPLLWP 55 (286)
T ss_dssp -CCEEEEET--C-CHHH--HHHHHHHGG--GTCEEEEEESCGGGHHHHHH-----TTEEEEESS
T ss_pred CcCcEEEEC--C-cHHH--HHHHHHHHH--CCCEEEEEEcChhhhhhHhh-----CCCeEEEec
Confidence 346777774 4 5443 478999999 9999999874432 223333 455665544
No 249
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=20.76 E-value=3.4e+02 Score=24.88 Aligned_cols=127 Identities=13% Similarity=0.118 Sum_probs=65.4
Q ss_pred cEEEEeccCCcCCCHHHHHHHHHHHHhC-CCcEEEEEcCCCCCCCCcchhcccCCchhHHHHhccCCCCeEEeeccChHH
Q 011106 279 SVLYISFGSMNTISASQMMQLAMALEAS-GKNFIWVVRPPIGFDINSEFRASEWLPEGFEERIRDSKRGLLMKNWAPQLE 357 (493)
Q Consensus 279 ~~V~vs~GS~~~~~~~~~~~i~~al~~~-~~~vi~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~nv~~~~~~pq~~ 357 (493)
.+..|+.|.+. ...+.++... +..++.+...+. .. ...+.++.+ + ..+-...+
T Consensus 7 ~vgiiG~G~~g-------~~~~~~l~~~~~~~lvav~d~~~-------~~-----~~~~~~~~g-----~--~~~~~~~~ 60 (354)
T 3db2_A 7 GVAAIGLGRWA-------YVMADAYTKSEKLKLVTCYSRTE-------DK-----REKFGKRYN-----C--AGDATMEA 60 (354)
T ss_dssp EEEEECCSHHH-------HHHHHHHTTCSSEEEEEEECSSH-------HH-----HHHHHHHHT-----C--CCCSSHHH
T ss_pred eEEEEccCHHH-------HHHHHHHHhCCCcEEEEEECCCH-------HH-----HHHHHHHcC-----C--CCcCCHHH
Confidence 37788888754 2355666665 556555554321 00 112222221 1 12556788
Q ss_pred hhccCCcCceeeccC----chhHHHHHHhCCcEec-ccccc--cchhhHH-HHhhhhceeEEeecCCCCccCHHHHHHHH
Q 011106 358 VLSHRATCAFLSHCG----WNSVLEALIHGVPIIG-WPMAA--EQFFNAK-FLEQEMGVCVEVARGKTCEVKHEDVVAKI 429 (493)
Q Consensus 358 lL~~~~v~~~I~HgG----~gs~~eal~~GvP~l~-~P~~~--DQ~~na~-~v~~~lG~G~~~~~~~~~~~~~~~l~~ai 429 (493)
+|..+++++++---- .-.+.+++.+|+++++ -|+.. ++-.-.. .+++. |+-+.+.. ..... -..+.+
T Consensus 61 ~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~-~~~~~v~~--~~R~~--p~~~~~ 135 (354)
T 3db2_A 61 LLAREDVEMVIITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKET-GVKFLCGH--SSRRL--GALRKM 135 (354)
T ss_dssp HHHCSSCCEEEECSCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHH-CCCEEEEC--GGGGS--HHHHHH
T ss_pred HhcCCCCCEEEEeCChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHc-CCeEEEee--chhcC--HHHHHH
Confidence 887666666664222 3346778999999887 36543 3433332 33334 66665554 12222 233345
Q ss_pred HHHhcCC
Q 011106 430 ELVMNET 436 (493)
Q Consensus 430 ~~~l~~~ 436 (493)
++++.+.
T Consensus 136 k~~i~~g 142 (354)
T 3db2_A 136 KEMIDTK 142 (354)
T ss_dssp HHHHHTT
T ss_pred HHHHhcC
Confidence 5555443
No 250
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=20.59 E-value=78 Score=28.49 Aligned_cols=36 Identities=11% Similarity=0.031 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEC-CCCcccHHHHHHHHHHHHhcCCCeEEEEEeCc
Q 011106 1 MAQSKENIVMFP-FMAQGHIIPFLALALHIEQRHKNYSITFVSTP 44 (493)
Q Consensus 1 m~~~~~~il~~~-~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~~ 44 (493)
|+ ++++|+++- .+..| .+|++.|.+ +||+|+.++-.
T Consensus 1 M~-~~~~ilVtGatG~iG-----~~l~~~L~~--~g~~V~~~~R~ 37 (313)
T 1qyd_A 1 MD-KKSRVLIVGGTGYIG-----KRIVNASIS--LGHPTYVLFRP 37 (313)
T ss_dssp -C-CCCCEEEESTTSTTH-----HHHHHHHHH--TTCCEEEECCS
T ss_pred CC-CCCEEEEEcCCcHHH-----HHHHHHHHh--CCCcEEEEECC
Confidence 55 345676664 24444 468899999 99999988744
No 251
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=20.54 E-value=58 Score=29.80 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=26.1
Q ss_pred CCcEEEEECCCCcccHHHHHHHHHHHHhcCCCe-EEEEEeC
Q 011106 4 SKENIVMFPFMAQGHIIPFLALALHIEQRHKNY-SITFVST 43 (493)
Q Consensus 4 ~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh-~Vt~~~~ 43 (493)
..++|.|+-.+..|. .+|+.|.+ .|| +|+++..
T Consensus 23 ~~~~I~iIG~G~mG~-----~~A~~L~~--~G~~~V~~~dr 56 (312)
T 3qsg_A 23 NAMKLGFIGFGEAAS-----AIASGLRQ--AGAIDMAAYDA 56 (312)
T ss_dssp --CEEEEECCSHHHH-----HHHHHHHH--HSCCEEEEECS
T ss_pred CCCEEEEECccHHHH-----HHHHHHHH--CCCCeEEEEcC
Confidence 356899998777774 78999999 999 9998865
No 252
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=20.46 E-value=2.4e+02 Score=26.47 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=25.5
Q ss_pred EEEEeccCCcCCCHHHHHHHHHHHHhCCCcEEEEEcC
Q 011106 280 VLYISFGSMNTISASQMMQLAMALEASGKNFIWVVRP 316 (493)
Q Consensus 280 ~V~vs~GS~~~~~~~~~~~i~~al~~~~~~vi~~~~~ 316 (493)
+++++.||.. .-.-+..++.+|.+.|++|.+.+..
T Consensus 3 Ili~~~gt~G--hv~p~~~La~~L~~~Gh~V~v~~~~ 37 (404)
T 3h4t_A 3 VLITGCGSRG--DTEPLVALAARLRELGADARMCLPP 37 (404)
T ss_dssp EEEEEESSHH--HHHHHHHHHHHHHHTTCCEEEEECG
T ss_pred EEEEeCCCCc--cHHHHHHHHHHHHHCCCeEEEEeCH
Confidence 6778888753 2233555889999999999988764
No 253
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=20.44 E-value=49 Score=28.40 Aligned_cols=33 Identities=21% Similarity=0.145 Sum_probs=25.4
Q ss_pred CCCcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEe
Q 011106 3 QSKENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVS 42 (493)
Q Consensus 3 ~~~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~ 42 (493)
|+++||.++-.+..|. .+|+.|.+ .||+|+++.
T Consensus 21 m~mmkI~IIG~G~mG~-----~la~~l~~--~g~~V~~v~ 53 (220)
T 4huj_A 21 QSMTTYAIIGAGAIGS-----ALAERFTA--AQIPAIIAN 53 (220)
T ss_dssp GGSCCEEEEECHHHHH-----HHHHHHHH--TTCCEEEEC
T ss_pred hcCCEEEEECCCHHHH-----HHHHHHHh--CCCEEEEEE
Confidence 3456899987666663 68899999 999999854
No 254
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=20.28 E-value=2.1e+02 Score=21.58 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=30.6
Q ss_pred EEEEECCCCcccH--HHHHHHHHHHHhcCCCeEEEEEeCccchhhhhc
Q 011106 7 NIVMFPFMAQGHI--IPFLALALHIEQRHKNYSITFVSTPLNIKKLKS 52 (493)
Q Consensus 7 ~il~~~~~~~GH~--~p~l~LA~~L~~~~~Gh~Vt~~~~~~~~~~v~~ 52 (493)
-++++..+-+|+. .-.+.+|.++.+ .||+|.++-...-.-.+.+
T Consensus 4 ~~~vv~~~P~g~~~~~~al~~a~a~~a--~~~~v~vff~~DGV~~~~~ 49 (119)
T 2d1p_B 4 IAFVFSTAPHGTAAGREGLDALLATSA--LTDDLAVFFIADGVFQLLP 49 (119)
T ss_dssp EEEEECSCTTTSTHHHHHHHHHHHHHT--TCSCEEEEECGGGGGGGCT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHh--CCCCEEEEEehHHHHHHhc
Confidence 3445555666765 557888999888 8999998887755544443
No 255
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=20.19 E-value=1.7e+02 Score=28.28 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=26.0
Q ss_pred CcEEEEECCCCcccHHHHHHHHHHHHhcCCCeEEEEEeC
Q 011106 5 KENIVMFPFMAQGHIIPFLALALHIEQRHKNYSITFVST 43 (493)
Q Consensus 5 ~~~il~~~~~~~GH~~p~l~LA~~L~~~~~Gh~Vt~~~~ 43 (493)
.+||+|+-.+..|= ++|+.|.+ +||+|+..=.
T Consensus 9 ~k~v~viG~G~sG~-----s~A~~l~~--~G~~V~~~D~ 40 (451)
T 3lk7_A 9 NKKVLVLGLARSGE-----AAARLLAK--LGAIVTVNDG 40 (451)
T ss_dssp TCEEEEECCTTTHH-----HHHHHHHH--TTCEEEEEES
T ss_pred CCEEEEEeeCHHHH-----HHHHHHHh--CCCEEEEEeC
Confidence 47999998876653 46999999 9999999854
No 256
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=20.13 E-value=1e+02 Score=27.09 Aligned_cols=41 Identities=17% Similarity=-0.088 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcCCCCCcEEEECCcch-------hhHHHHHHcCCceEEEe
Q 011106 101 PAFKEVISSLINQGRPPLCIIADIFFG-------WTCGVAKELNVFHAIFS 144 (493)
Q Consensus 101 ~~l~~~l~~~~~~~~~pDlvI~D~~~~-------~~~~~A~~lgiP~i~~~ 144 (493)
+.+.++++++. ..||+|++|.... -|..+.-.+++|+|.+.
T Consensus 97 P~ll~al~~L~---~~PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVA 144 (246)
T 3ga2_A 97 PLIIEAAKKLE---TEPDVFLFDGNGYLHYNHMGVATHAAFFLGKPTIGIA 144 (246)
T ss_dssp HHHHHHHHHCS---SCCSCEEEEBCSSSSTTSCCHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHHhcC---CCCCEEEEcCcEEecCCCcchhheeeeecCCCEEeee
Confidence 56666677765 3499999995422 34467788899999974
Done!