BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011108
(493 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 206 bits (524), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 142/256 (55%), Gaps = 5/256 (1%)
Query: 77 ADKIKWLPGQPDGVDFDQYAGYVTVDPKTGRSLFYYFAESPQNSSTXXXXXXXXXXXXCS 136
AD+I LPGQP VDFD Y+GY+TVD GRSLFY E+P+++ CS
Sbjct: 4 ADRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 62
Query: 137 SLGYGAMSELGPFRVNKDGKTLFRXXXXXXXXXXXXFLESPAGVGFSYSSTKSDYELNGD 196
S+ YGA ELG FRV G L FL+SPAGVGFSY++T SD +GD
Sbjct: 63 SVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 122
Query: 197 KLTAQDSYTFLVNWLERFPQYKKRDFYIAGESYAGHYVPQLAYXXXXXXXXXXXXXXXXX 256
TA DSY FL W ERFP YK RDFYIAGESYAGHYVP+L+
Sbjct: 123 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELS----QLVHRSKNPVINLK 178
Query: 257 GIAIGNALIDGPTRSMGVYENLWTHALNSDQTHKGIFTYCDFAREGNDTKECETFLEKAS 316
G +GN LID +G +E W H + SD T++ + C + + C+ + A+
Sbjct: 179 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVAT 238
Query: 317 DEIGDIDIYNIYAPIC 332
E G+ID+Y++Y P+C
Sbjct: 239 AEQGNIDMYSLYTPVC 254
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 206 bits (524), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 142/256 (55%), Gaps = 5/256 (1%)
Query: 77 ADKIKWLPGQPDGVDFDQYAGYVTVDPKTGRSLFYYFAESPQNSSTXXXXXXXXXXXXCS 136
AD+I LPGQP VDFD Y+GY+TVD GRSLFY E+P+++ CS
Sbjct: 8 ADRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 66
Query: 137 SLGYGAMSELGPFRVNKDGKTLFRXXXXXXXXXXXXFLESPAGVGFSYSSTKSDYELNGD 196
S+ YGA ELG FRV G L FL+SPAGVGFSY++T SD +GD
Sbjct: 67 SVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 126
Query: 197 KLTAQDSYTFLVNWLERFPQYKKRDFYIAGESYAGHYVPQLAYXXXXXXXXXXXXXXXXX 256
TA DSY FL W ERFP YK RDFYIAGESYAGHYVP+L+
Sbjct: 127 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELS----QLVHRSKNPVINLK 182
Query: 257 GIAIGNALIDGPTRSMGVYENLWTHALNSDQTHKGIFTYCDFAREGNDTKECETFLEKAS 316
G +GN LID +G +E W H + SD T++ + C + + C+ + A+
Sbjct: 183 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVAT 242
Query: 317 DEIGDIDIYNIYAPIC 332
E G+ID+Y++Y P+C
Sbjct: 243 AEQGNIDMYSLYTPVC 258
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 206 bits (523), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 142/256 (55%), Gaps = 5/256 (1%)
Query: 77 ADKIKWLPGQPDGVDFDQYAGYVTVDPKTGRSLFYYFAESPQNSSTXXXXXXXXXXXXCS 136
AD+I LPGQP VDFD Y+GY+TVD GRSLFY E+P+++ CS
Sbjct: 3 ADRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 61
Query: 137 SLGYGAMSELGPFRVNKDGKTLFRXXXXXXXXXXXXFLESPAGVGFSYSSTKSDYELNGD 196
S+ YGA ELG FRV G L FL+SPAGVGFSY++T SD +GD
Sbjct: 62 SVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 121
Query: 197 KLTAQDSYTFLVNWLERFPQYKKRDFYIAGESYAGHYVPQLAYXXXXXXXXXXXXXXXXX 256
TA DSY FL W ERFP YK RDFYIAGESYAGHYVP+L+
Sbjct: 122 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELS----QLVHRSKNPVINLK 177
Query: 257 GIAIGNALIDGPTRSMGVYENLWTHALNSDQTHKGIFTYCDFAREGNDTKECETFLEKAS 316
G +GN LID +G +E W H + SD T++ + C + + C+ + A+
Sbjct: 178 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVAT 237
Query: 317 DEIGDIDIYNIYAPIC 332
E G+ID+Y++Y P+C
Sbjct: 238 AEQGNIDMYSLYTPVC 253
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 206 bits (523), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 111/256 (43%), Positives = 142/256 (55%), Gaps = 5/256 (1%)
Query: 77 ADKIKWLPGQPDGVDFDQYAGYVTVDPKTGRSLFYYFAESPQNSSTXXXXXXXXXXXXCS 136
AD+I LPGQP VDFD Y+GY+TVD GRSLFY E+P+++ CS
Sbjct: 8 ADRIARLPGQP-AVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCS 66
Query: 137 SLGYGAMSELGPFRVNKDGKTLFRXXXXXXXXXXXXFLESPAGVGFSYSSTKSDYELNGD 196
S+ YGA ELG FRV G L FL+SPAGVGFSY++T SD +GD
Sbjct: 67 SVAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGD 126
Query: 197 KLTAQDSYTFLVNWLERFPQYKKRDFYIAGESYAGHYVPQLAYXXXXXXXXXXXXXXXXX 256
TA DSY FL W ERFP YK RDFYIAGESYAGHYVP+L+
Sbjct: 127 NRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELS----QLVHRSKNPVINLK 182
Query: 257 GIAIGNALIDGPTRSMGVYENLWTHALNSDQTHKGIFTYCDFAREGNDTKECETFLEKAS 316
G +GN LID +G +E W H + SD T++ + C + + C+ + A+
Sbjct: 183 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVAT 242
Query: 317 DEIGDIDIYNIYAPIC 332
E G+ID+Y++Y P+C
Sbjct: 243 AEQGNIDMYSLYTPVC 258
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 185 bits (470), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 137/256 (53%), Gaps = 6/256 (2%)
Query: 78 DKIKWLPGQPDGVDFDQYAGYVTVDPKTGRSLFYYFAESPQNSSTXXXXXX-XXXXXXCS 136
D+I LPGQP+GV F Y GYVT+D GR+L+Y+F E+ CS
Sbjct: 8 DRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGPGCS 67
Query: 137 SLGYGAMSELGPFRVNKDGKTLFRXXXXXXXXXXXXFLESPAGVGFSYSSTKSDYELNGD 196
S+G GAM ELG FRV+ +G++L F ESPAGVGFSYS+T SD + D
Sbjct: 68 SIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSSDLSMGDD 127
Query: 197 KLTAQDSYTFLVNWLERFPQYKKRDFYIAGESYAGHYVPQLAYXXXXXXXXXXXXXXXXX 256
K+ AQD+YTFLV W ERFP Y R+FYIAGES GH++PQL+
Sbjct: 128 KM-AQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLS--QVVYRNRNNSPFINFQ 182
Query: 257 GIAIGNALIDGPTRSMGVYENLWTHALNSDQTHKGIFTYCDFAREGNDTKECETFLEKAS 316
G+ + + L + +G++E+ W H L SD+T C + T EC KA
Sbjct: 183 GLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPECTEVWNKAL 242
Query: 317 DEIGDIDIYNIYAPIC 332
E G+I+ Y IY P C
Sbjct: 243 AEQGNINPYTIYTPTC 258
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/153 (50%), Positives = 100/153 (65%), Gaps = 7/153 (4%)
Query: 347 NYDPCTDYYVEAYLNTREVQTVLHVKPT-----NWTACSNLFN--WTDSPSTVLPTIKNL 399
+YDPCT+ Y AY N R+VQ LH T W CS+ N W D+P ++LP + L
Sbjct: 3 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYREL 62
Query: 400 IASGIRVWIYSGDVDGIVPTTASRYSINALNLPVEIPWYPWYTNDEVGGYVEAYQGLTLV 459
IA+G+R+W++SGD D +VP TA+RYSI AL LP WYPWY + EVGG+ + Y+GLTLV
Sbjct: 63 IAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLV 122
Query: 460 TVRGAGHLVPSDQPERALTLISSFLHGILPPSK 492
+VRGAGH VP +P +AL L FL G P +
Sbjct: 123 SVRGAGHEVPLHRPRQALVLFQYFLQGKPMPGQ 155
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/153 (50%), Positives = 100/153 (65%), Gaps = 7/153 (4%)
Query: 347 NYDPCTDYYVEAYLNTREVQTVLHVKPT-----NWTACSNLFN--WTDSPSTVLPTIKNL 399
+YDPCT+ Y AY N R+VQ LH T W CS+ N W D+P ++LP + L
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYREL 60
Query: 400 IASGIRVWIYSGDVDGIVPTTASRYSINALNLPVEIPWYPWYTNDEVGGYVEAYQGLTLV 459
IA+G+R+W++SGD D +VP TA+RYSI AL LP WYPWY + EVGG+ + Y+GLTLV
Sbjct: 61 IAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLV 120
Query: 460 TVRGAGHLVPSDQPERALTLISSFLHGILPPSK 492
+VRGAGH VP +P +AL L FL G P +
Sbjct: 121 SVRGAGHEVPLHRPRQALVLFQYFLQGKPMPGQ 153
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 98/147 (66%), Gaps = 7/147 (4%)
Query: 347 NYDPCTDYYVEAYLNTREVQTVLHVKPT-----NWTACSNLFN--WTDSPSTVLPTIKNL 399
+YDPCT+ Y AY N R+VQ LH T W CS+ N W D+P ++LP + L
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYREL 60
Query: 400 IASGIRVWIYSGDVDGIVPTTASRYSINALNLPVEIPWYPWYTNDEVGGYVEAYQGLTLV 459
IA+G+R+W++SGD D +VP TA+RYSI AL LP WYPWY + EVGG+ + Y+GLTLV
Sbjct: 61 IAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLV 120
Query: 460 TVRGAGHLVPSDQPERALTLISSFLHG 486
+VRGAGH VP +P +AL L FL G
Sbjct: 121 SVRGAGHEVPLHRPRQALVLFQYFLQG 147
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 98/147 (66%), Gaps = 7/147 (4%)
Query: 347 NYDPCTDYYVEAYLNTREVQTVLHVKPT-----NWTACSNLFN--WTDSPSTVLPTIKNL 399
+YDPCT+ Y AY N R+VQ LH T W CS+ N W D+P ++LP + L
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYREL 60
Query: 400 IASGIRVWIYSGDVDGIVPTTASRYSINALNLPVEIPWYPWYTNDEVGGYVEAYQGLTLV 459
IA+G+R+W++SGD D +VP TA+RYSI AL LP WYPWY + EVGG+ + Y+GLTLV
Sbjct: 61 IAAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVYKGLTLV 120
Query: 460 TVRGAGHLVPSDQPERALTLISSFLHG 486
+VRGAGH VP +P +AL L FL G
Sbjct: 121 SVRGAGHEVPLHRPRQALVLFQYFLQG 147
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 131/464 (28%), Positives = 201/464 (43%), Gaps = 76/464 (16%)
Query: 78 DKIKWLPGQPDGVDFDQYAGYVTVDPKTGRSLFYYFAESPQNSSTXXXXXXXXXXXXCSS 137
D+I+ LPG F QY+GY+ + L Y+F ES ++ CSS
Sbjct: 5 DEIQRLPGLAKQPSFRQYSGYLK--SSGSKHLHYWFVESQKDPENSPVVLWLNGGPGCSS 62
Query: 138 LGYGAMSELGPFRVNKDGKTLFRXXXXXXXXXXXXFLESPAGVGFSYSSTKSDYELNGDK 197
L G ++E GPF V DG TL +LESPAGVGFSYS K + D
Sbjct: 63 LD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDK--FYATNDT 119
Query: 198 LTAQDSYTFLVNWLERFPQYKKRDFYIAGESYAGHYVPQLAYXXXXXXXXXXXXXXXXXG 257
AQ ++ L ++ FP+YK ++ GESYAG Y+P LA G
Sbjct: 120 EVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLA------VLVMQDPSMNLQG 173
Query: 258 IAIGNALI-----DGPTRSMGVYENLWTHAL-NSDQTHKGIFTYCDFAREGNDTKECETF 311
+A+GN L D Y L + L +S QTH C+F N EC T
Sbjct: 174 LAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFY--DNKDLECVTN 231
Query: 312 LEKASDEIGD--IDIYNIYAPICINPAFQNGSIGSVHNYD-------------------- 349
L++ + +G+ ++IYN+YAP G + S Y+
Sbjct: 232 LQEVARIVGNSGLNIYNLYAPCA-------GGVPSHFRYEKDTVVVQDLGNIFTRLPLKR 284
Query: 350 -----------------PCTDYYVEA-YLNTREVQTVLHV--KPTNWTACSNLFNWTDS- 388
PCT+ + YLN V+ L++ + W C+ L N
Sbjct: 285 MWHQALLRSGDKVRMDPPCTNTTAASTYLNNPYVRKALNIPEQLPQWDMCNFLVNLQYRR 344
Query: 389 --PSTVLPTIKNLIASGIRVWIYSGDVDGIVPTTASRYSINALNLPVEIPWYPWY----- 441
S +K L + ++ +Y+GDVD + +++LN +E+ PW
Sbjct: 345 LYRSMNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGD 404
Query: 442 TNDEVGGYVEAYQGLTLVTVRGAGHLVPSDQPERALTLISSFLH 485
+ +++ G+V+ + + +T++GAGH+VP+D+P A T+ S FL+
Sbjct: 405 SGEQIAGFVKEFSHIAFLTIKGAGHMVPTDKPLAAFTMFSRFLN 448
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 90/149 (60%), Gaps = 10/149 (6%)
Query: 348 YDPCTDYYVEAYLNTREVQTVLHVKPTN-----WTACSNLF--NWTDSPSTVLPTIKNLI 400
YDPC + YLN EVQT LH + WT CSN W + +LP + LI
Sbjct: 4 YDPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELI 63
Query: 401 ASGIRVWIYSGDVDGIVPTTASRYSINALNLPVEIPWYPWY---TNDEVGGYVEAYQGLT 457
+G+RVW+YSGD D +VP +++R S+ AL LPV+ WYPWY T EVGG+ Y+GLT
Sbjct: 64 QAGLRVWVYSGDTDSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVGGWSVQYEGLT 123
Query: 458 LVTVRGAGHLVPSDQPERALTLISSFLHG 486
VTVRGAGHLVP +P +A L FL G
Sbjct: 124 YVTVRGAGHLVPVHRPAQAFLLFKQFLKG 152
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 120/261 (45%), Gaps = 21/261 (8%)
Query: 78 DKIKWLPGQPDGVDFDQYAGYVTVDPKTGRSLFYYFAESPQNSSTXXXXXXXXXXXXCSS 137
D+I+ LPG F QY+GY+ + L Y+F ES ++ CSS
Sbjct: 7 DEIQRLPGLAKQPSFRQYSGYLK--GSGSKHLHYWFVESQKDPENSPVVLWLNGGPGCSS 64
Query: 138 LGYGAMSELGPFRVNKDGKTLFRXXXXXXXXXXXXFLESPAGVGFSYSSTKSDYELNGDK 197
L G ++E GPF V DG TL +LESPAGVGFSYS K + D
Sbjct: 65 LD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDK--FYATNDT 121
Query: 198 LTAQDSYTFLVNWLERFPQYKKRDFYIAGESYAGHYVPQLAYXXXXXXXXXXXXXXXXXG 257
AQ ++ L ++ FP+YK ++ GESYAG Y+P LA G
Sbjct: 122 EVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLA------VLVMQDPSMNLQG 175
Query: 258 IAIGNALI-----DGPTRSMGVYENLWTHAL-NSDQTHKGIFTYCDFAREGNDTKECETF 311
+A+GN L D Y L + L +S QTH C+F N EC T
Sbjct: 176 LAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYD--NKDLECVTN 233
Query: 312 LEKASDEIGD--IDIYNIYAP 330
L++ + +G+ ++IYN+YAP
Sbjct: 234 LQEVARIVGNSGLNIYNLYAP 254
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 104/426 (24%), Positives = 166/426 (38%), Gaps = 57/426 (13%)
Query: 94 QYAGYVTVDPKTGRSLFYYFAESPQNSSTXXXXXXXXXXXXCSSLGYGAMSELGPFRVNK 153
QY GY+ V+ + F+ F ES + + CSSL G ELGP +
Sbjct: 16 QYTGYLDVEDEDKHFFFWTF-ESRNDPAKDPVILWLNGGPGCSSLT-GLFFELGPSSIGP 73
Query: 154 DGKTLFRXXXXXXXXXXXXFLESPAGVGFSYSSTKSDYELNGDKLTAQDSYTFLVNWLER 213
D K + FL+ P VGFSYS + ++ +D Y FL + ++
Sbjct: 74 DLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSSG---VSNTVAAGKDVYNFLELFFDQ 129
Query: 214 FPQY--KKRDFYIAGESYAGHYVPQLAYXXXXXXXXXXXXXXXXXGIAIGNALIDGPTRS 271
FP+Y K +DF+IAGESYAGHY+P A + IGN L D P
Sbjct: 130 FPEYVNKGQDFHIAGESYAGHYIPVFA----SEILSHKDRNFNLTSVLIGNGLTD-PLTQ 184
Query: 272 MGVYENLWTHALNSDQTHKGIFTYCDFAREGNDTKECETFLEKASD--EIGDIDIYNIYA 329
YE + + + + + + + C +E D + IY
Sbjct: 185 YNYYEPMAC----GEGGEPSVLPSEECSAMEDSLERCLGLIESCYDSQSVWSCVPATIY- 239
Query: 330 PICINPAFQNGSIGSVHNYDPCTDYY-----------VEAYLNTREVQTVLHVKPTNWTA 378
C N + YD D ++ YLN V+ + + ++ +
Sbjct: 240 --CNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAEVDHYES 297
Query: 379 CS-----NLFNWTDSPSTVLPTIKNLIASGIRVWIYSGDVDGIVPTTASRYSINALNLPV 433
C+ N D + +L+ + + +Y+GD D I ++ + L
Sbjct: 298 CNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVL---- 353
Query: 434 EIPW-------------YPWYTNDEVGGYVEAYQGLTLVTVRGAGHLVPSDQPERALTLI 480
PW + DEV G V++Y+ T + V GH+VP D PE AL+++
Sbjct: 354 --PWKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVPFDVPENALSMV 411
Query: 481 SSFLHG 486
+ ++HG
Sbjct: 412 NEWIHG 417
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 102/386 (26%), Positives = 159/386 (41%), Gaps = 58/386 (15%)
Query: 135 CSSLGYGAMSELGPFRVNKDGKTLFRXXXXXXXXXXXXFLESPAGVGFSYSSTKSDYELN 194
CSS+ GA+ E GPFRVN DGK L+ F++ P G GFS K + +++
Sbjct: 79 CSSMD-GALVESGPFRVNSDGK-LYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEGKID 136
Query: 195 GDKL------TAQDSYTFLVNWLERFPQYKKRDFYIAGESYAGHYVPQLAYXXXXXXXXX 248
+K + FL N+ + FP+ R ++GESYAG Y+P A
Sbjct: 137 KNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFS 196
Query: 249 XXXXXX--XXGIAIGNALIDGPTRSM-----GVYENL-------WTHALNSDQTHKGIFT 294
+ IGN ID T+S+ + + L + H N+ + + +
Sbjct: 197 KIDGDTYDLKALLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPNFKHLTNAHENCQNLIN 256
Query: 295 YCDFAREGNDT-KECETFLE------KASDEIGDIDIYNIYAPICINPAFQNGSIGSVHN 347
+ + +ECE L + S + G D N+Y N ++ N
Sbjct: 257 SASTDEAAHFSYQECENILNLLLSYTRESSQKGTADCLNMY-----NFNLKDSYPSCGMN 311
Query: 348 YDPCTDYYVEAYLNTREVQTVLHV---KPTNWTACSN-----LFNWTDSPSTVLPTIKNL 399
+ P +V + +T V LH+ K +W C+N L N PS L + L
Sbjct: 312 W-PKDISFVSKFFSTPGVIDSLHLDSDKIDHWKECTNSVGTKLSNPISKPSIHL--LPGL 368
Query: 400 IASGIRVWIYSGDVDGIVPTTASRYSINAL---------NLPVEIPWY--PWYTND--EV 446
+ SGI + +++GD D I +I+ L + V W T+D E
Sbjct: 369 LESGIEIVLFNGDKDLICNNKGVLDTIDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEF 428
Query: 447 GGYVEAYQGLTLVTVRGAGHLVPSDQ 472
GYV+ + LT V+V A H+VP D+
Sbjct: 429 SGYVKYDRNLTFVSVYNASHMVPFDK 454
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 102/426 (23%), Positives = 164/426 (38%), Gaps = 57/426 (13%)
Query: 94 QYAGYVTVDPKTGRSLFYYFAESPQNSSTXXXXXXXXXXXXCSSLGYGAMSELGPFRVNK 153
QY GY+ V+ + F+ F ES + + CSSL G LGP +
Sbjct: 16 QYTGYLDVEDEDKHFFFWTF-ESRNDPAKDPVILWLNGGPGCSSLT-GLFFALGPSSIGP 73
Query: 154 DGKTLFRXXXXXXXXXXXXFLESPAGVGFSYSSTKSDYELNGDKLTAQDSYTFLVNWLER 213
D K + FL+ P VGFSYS + ++ +D Y FL + ++
Sbjct: 74 DLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSSG---VSNTVAAGKDVYNFLELFFDQ 129
Query: 214 FPQY--KKRDFYIAGESYAGHYVPQLAYXXXXXXXXXXXXXXXXXGIAIGNALIDGPTRS 271
FP+Y K +DF+IAG SYAGHY+P A + IGN L D P
Sbjct: 130 FPEYVNKGQDFHIAGASYAGHYIPVFA----SEILSHKDRNFNLTSVLIGNGLTD-PLTQ 184
Query: 272 MGVYENLWTHALNSDQTHKGIFTYCDFAREGNDTKECETFLEKASD--EIGDIDIYNIYA 329
YE + + + + + + + C +E D + IY
Sbjct: 185 YNYYEPMAC----GEGGEPSVLPSEECSAMEDSLERCLGLIESCYDSQSVWSCVPATIY- 239
Query: 330 PICINPAFQNGSIGSVHNYDPCTDYY-----------VEAYLNTREVQTVLHVKPTNWTA 378
C N + YD D ++ YLN V+ + + ++ +
Sbjct: 240 --CNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAEVDHYES 297
Query: 379 CS-----NLFNWTDSPSTVLPTIKNLIASGIRVWIYSGDVDGIVPTTASRYSINALNLPV 433
C+ N D + +L+ + + +Y+GD D I ++ + L
Sbjct: 298 CNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVL---- 353
Query: 434 EIPW-------------YPWYTNDEVGGYVEAYQGLTLVTVRGAGHLVPSDQPERALTLI 480
PW + DEV G V++Y+ T + V GH+VP D PE AL+++
Sbjct: 354 --PWKYDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVPFDVPENALSMV 411
Query: 481 SSFLHG 486
+ ++HG
Sbjct: 412 NEWIHG 417
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 11/147 (7%)
Query: 350 PCTDYYVEA-YLNTREVQTVLHV--KPTNWTACSNLFNWTDSP---STVLPTIKNLIASG 403
PCT+ + YLN V+ L++ + W C+ L N S +K L +
Sbjct: 4 PCTNTTAASTYLNNPYVRKALNIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQK 63
Query: 404 IRVWIYSGDVDGIVPTTASRYSINALNLPVEIPWYPWY-----TNDEVGGYVEAYQGLTL 458
++ +Y+GDVD + +++LN +E+ PW + +++ G+V+ + +
Sbjct: 64 YQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHIAF 123
Query: 459 VTVRGAGHLVPSDQPERALTLISSFLH 485
+T++GAGH+VP+D+P A T+ S FL+
Sbjct: 124 LTIKGAGHMVPTDKPLAAFTMFSRFLN 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,928,443
Number of Sequences: 62578
Number of extensions: 632246
Number of successful extensions: 1437
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1376
Number of HSP's gapped (non-prelim): 24
length of query: 493
length of database: 14,973,337
effective HSP length: 103
effective length of query: 390
effective length of database: 8,527,803
effective search space: 3325843170
effective search space used: 3325843170
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)