Query 011109
Match_columns 493
No_of_seqs 326 out of 1610
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 21:00:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a69_A Histone deacetylase 3,; 100.0 8E-115 3E-119 900.9 40.4 373 16-388 2-376 (376)
2 3max_A HD2, histone deacetylas 100.0 2E-113 7E-118 886.7 39.8 367 15-381 1-367 (367)
3 3ew8_A HD8, histone deacetylas 100.0 4E-110 1E-114 866.2 35.0 371 12-385 9-380 (388)
4 1c3p_A Protein (HDLP (histone 100.0 9.6E-91 3.3E-95 721.3 30.6 319 17-338 2-324 (375)
5 1zz1_A Histone deacetylase-lik 100.0 2E-87 6.9E-92 695.1 33.7 315 17-343 1-343 (369)
6 2vqm_A HD4, histone deacetylas 100.0 7.2E-87 2.4E-91 700.1 26.7 364 15-394 6-400 (413)
7 3q9b_A Acetylpolyamine amidohy 100.0 1.8E-84 6.2E-89 665.3 29.7 305 20-329 2-341 (341)
8 3men_A Acetylpolyamine aminohy 100.0 7.5E-84 2.5E-88 664.5 30.7 306 19-330 22-360 (362)
9 2pqp_A HD7A, histone deacetyla 100.0 3.4E-83 1.2E-87 669.0 30.6 353 16-384 35-419 (421)
10 4hf7_A Putative acylhydrolase; 80.5 1.8 6E-05 39.5 5.0 50 257-306 74-124 (209)
11 3ced_A Methionine import ATP-b 67.3 1.7 5.7E-05 36.2 1.1 57 250-306 34-95 (98)
12 1ivn_A Thioesterase I; hydrola 64.6 15 0.00051 32.2 6.9 46 255-306 56-105 (190)
13 4h08_A Putative hydrolase; GDS 64.4 18 0.00061 32.0 7.5 64 231-306 48-117 (200)
14 3mil_A Isoamyl acetate-hydroly 62.8 16 0.00056 32.7 7.0 70 231-307 46-120 (240)
15 3p94_A GDSL-like lipase; serin 58.9 9.2 0.00031 33.6 4.4 48 256-306 69-120 (204)
16 1es9_A PAF-AH, platelet-activa 58.8 10 0.00036 34.5 4.9 44 256-307 88-137 (232)
17 3d2m_A Putative acetylglutamat 56.9 11 0.00039 38.9 5.4 69 235-311 16-85 (456)
18 3bzw_A Putative lipase; protei 53.9 14 0.00048 34.9 5.1 37 244-282 73-110 (274)
19 1uf3_A Hypothetical protein TT 52.9 34 0.0011 30.5 7.3 51 249-308 21-71 (228)
20 2qsw_A Methionine import ATP-b 52.6 2.7 9.1E-05 34.8 -0.3 56 251-306 38-97 (100)
21 1yzf_A Lipase/acylhydrolase; s 52.5 23 0.00079 30.4 5.9 65 232-307 43-111 (195)
22 3hp4_A GDSL-esterase; psychrot 51.8 14 0.0005 31.9 4.5 45 255-306 60-109 (185)
23 2vpt_A Lipolytic enzyme; ester 50.9 12 0.00041 33.7 3.9 56 243-306 69-126 (215)
24 2q8u_A Exonuclease, putative; 46.7 33 0.0011 33.5 6.6 59 243-308 44-104 (336)
25 3av0_A DNA double-strand break 46.5 35 0.0012 34.3 6.9 58 243-308 43-103 (386)
26 2buf_A Acetylglutamate kinase; 46.2 42 0.0014 32.9 7.3 64 243-313 8-71 (300)
27 2q0q_A ARYL esterase; SGNH hyd 45.7 20 0.00069 31.7 4.5 49 255-307 76-138 (216)
28 3rjt_A Lipolytic protein G-D-S 45.4 6.4 0.00022 34.7 1.1 52 255-306 77-136 (216)
29 3dhx_A Methionine import ATP-b 45.3 5.5 0.00019 33.4 0.6 56 251-306 36-95 (106)
30 1ii7_A MRE11 nuclease; RAD50, 44.6 59 0.002 31.7 8.1 58 243-308 23-83 (333)
31 3dci_A Arylesterase; SGNH_hydr 43.4 30 0.001 31.5 5.4 48 255-306 94-153 (232)
32 2qrr_A Methionine import ATP-b 43.3 4.9 0.00017 33.2 -0.0 56 251-306 38-97 (101)
33 2o14_A Hypothetical protein YX 41.7 25 0.00086 35.5 4.9 69 231-306 202-275 (375)
34 2ap9_A NAG kinase, acetylgluta 41.3 25 0.00084 34.4 4.7 67 240-313 4-70 (299)
35 1fxw_F Alpha2, platelet-activa 40.9 27 0.00093 31.7 4.7 42 257-306 90-137 (229)
36 3skv_A SSFX3; jelly roll, GDSL 32.7 39 0.0013 34.5 4.7 52 254-307 237-290 (385)
37 2rd5_A Acetylglutamate kinase- 31.7 24 0.00081 34.6 2.8 63 243-312 18-80 (298)
38 3dff_A Teicoplanin pseudoaglyc 31.0 48 0.0016 32.1 4.8 31 245-275 132-162 (273)
39 1k7c_A Rhamnogalacturonan acet 30.0 1E+02 0.0034 28.3 6.7 41 231-274 35-76 (233)
40 3aek_B Light-independent proto 29.9 67 0.0023 34.1 6.1 56 248-314 72-128 (525)
41 2bty_A Acetylglutamate kinase; 29.7 41 0.0014 32.4 4.1 63 244-313 4-66 (282)
42 3dfi_A Pseudoaglycone deacetyl 29.6 56 0.0019 31.5 5.0 31 245-275 129-159 (270)
43 3dc7_A Putative uncharacterize 27.5 37 0.0013 30.6 3.2 47 260-306 81-135 (232)
44 3tho_B Exonuclease, putative; 27.2 97 0.0033 31.1 6.5 57 243-308 26-86 (379)
45 1y80_A Predicted cobalamin bin 27.1 1.1E+02 0.0036 28.0 6.3 47 255-312 133-182 (210)
46 3t1i_A Double-strand break rep 26.6 1.2E+02 0.0041 31.5 7.2 47 243-297 54-100 (431)
47 3d03_A Phosphohydrolase; glyce 26.5 1.4E+02 0.0047 27.3 7.0 55 245-308 24-79 (274)
48 4fva_A 5'-tyrosyl-DNA phosphod 25.8 66 0.0022 28.7 4.5 35 231-269 18-52 (256)
49 1vjg_A Putative lipase from th 25.5 44 0.0015 29.8 3.2 47 259-307 86-136 (218)
50 3ea0_A ATPase, para family; al 25.1 34 0.0012 31.2 2.4 19 173-191 31-50 (245)
51 2whl_A Beta-mannanase, baman5; 25.0 2.3E+02 0.0077 26.8 8.4 65 244-313 94-163 (294)
52 1g3q_A MIND ATPase, cell divis 24.6 55 0.0019 29.6 3.8 17 173-189 29-45 (237)
53 3jug_A Beta-mannanase; TIM-bar 24.2 2.2E+02 0.0075 28.4 8.4 65 244-313 117-186 (345)
54 2nxf_A Putative dimetal phosph 23.8 1.2E+02 0.0042 28.1 6.2 56 245-308 36-95 (322)
55 4hwg_A UDP-N-acetylglucosamine 23.5 1.7E+02 0.0057 29.4 7.4 62 230-311 66-127 (385)
56 4f1h_A Tyrosyl-DNA phosphodies 23.3 81 0.0028 27.4 4.5 17 253-269 26-42 (250)
57 2wao_A Endoglucanase E; plant 22.9 50 0.0017 32.4 3.3 48 258-307 210-260 (341)
58 3q9l_A Septum site-determining 22.6 63 0.0022 29.6 3.8 18 172-189 28-45 (260)
59 2q02_A Putative cytoplasmic pr 21.8 2.4E+02 0.0083 25.6 7.7 57 242-304 80-137 (272)
60 2v5h_A Acetylglutamate kinase; 21.7 42 0.0014 33.4 2.4 63 243-312 31-93 (321)
61 4gz1_A Tyrosyl-DNA phosphodies 21.7 88 0.003 27.7 4.5 17 253-269 32-48 (256)
62 4fbw_A DNA repair protein RAD3 21.5 1.9E+02 0.0064 30.0 7.4 47 244-298 36-82 (417)
63 1hyq_A MIND, cell division inh 21.3 71 0.0024 29.5 3.9 17 173-189 29-45 (263)
64 1szn_A Alpha-galactosidase; (b 21.1 2.1E+02 0.0072 29.4 7.7 73 239-311 25-101 (417)
65 2xdq_B Light-independent proto 20.9 1.7E+02 0.0058 30.8 7.1 55 251-315 78-134 (511)
66 2jjx_A Uridylate kinase, UMP k 20.6 1.2E+02 0.004 28.8 5.3 51 261-313 11-64 (255)
67 2xdq_A Light-independent proto 20.2 1.5E+02 0.0052 30.4 6.4 69 249-328 85-155 (460)
No 1
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.5e-115 Score=900.86 Aligned_cols=373 Identities=62% Similarity=1.215 Sum_probs=356.2
Q ss_pred CCeEEEEECCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCchhhHHH
Q 011109 16 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQ 95 (493)
Q Consensus 16 ~~~v~~~yd~~~~~~~~g~~HPe~P~R~~~i~~ll~~~gL~~~~~v~~p~~As~eeL~~vHs~~YI~~L~~~~~~~~~~~ 95 (493)
|+||+|||||+|++|++|++|||+|.|+++++++|+++||++.+++++|++|+.++|++||+++||++|++.+++...+.
T Consensus 2 ~~~~~~~y~~~~~~~~~g~~HPe~p~Rl~~i~~~l~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~ 81 (376)
T 4a69_A 2 AKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGF 81 (376)
T ss_dssp CCCEEEECCTTTTCCCCCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCTTTGGGG
T ss_pred CCeEEEEEChHHhCcCCCCCCCcCHHHHHHHHHHHHhcCCCCCceEeCCCCCCHHHHHHhCCHHHHHHHHHhCcccchhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999887654433
Q ss_pred HHhhhhcccCCCCcCCcchHHHHHHHHHHHHHHHHHHhcCccceeeecCCCCCCccccCCCcceeecHHHHHHHHHHhcC
Q 011109 96 LRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH 175 (493)
Q Consensus 96 ~~~l~~~~~~~Dcpvf~gl~~~~~~~aGgsl~aa~~L~~g~~~iAin~~GG~HHA~~~~AsGFCy~NdvaIAi~~llk~~ 175 (493)
.+...+|+++.|||+|+++|++|+++|||+|.||++|++|++++||||+||+|||++++|+||||||||||||++|++++
T Consensus 82 ~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~~~gG~HHA~~~~a~GFC~~NdvAiAa~~l~~~~ 161 (376)
T 4a69_A 82 TKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYH 161 (376)
T ss_dssp HHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTC
T ss_pred hhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeeeCCCCCCcCCcCCCCcchhhhHHHHHHHHHHHhC
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEccccCChhhhhhhhcCCCEEEeecCCCCC-CCCCCCCCCcccCCCCCccEeecCCCCCCChHHHHHHHHHHHH
Q 011109 176 ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGD-YFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIG 254 (493)
Q Consensus 176 ~RVl~VDiDvHHGDGtqeaF~~d~rVltiS~H~~g~-ffPgTG~~~eiG~g~G~g~~vNVPL~~G~~D~~yl~~f~~iv~ 254 (493)
+||||||||||||||||++||+|++|||||||+++. ||||||..+++|.|+|++|++|||||+|++|++|+.+|+++|.
T Consensus 162 ~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~D~~yl~~~~~~l~ 241 (376)
T 4a69_A 162 PRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVIN 241 (376)
T ss_dssp SCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCBHHHHHHHHHHHHH
T ss_pred CcEEEEeccCCCCcchhhHhcCCCCEEEEecccCCCcCCCCCCCccccCCCCCCceeEeeecCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999965 8999999999999999999999999999999999999999999
Q ss_pred hHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCCchhhHHHHHHHHHHcCCCCCC
Q 011109 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDD 334 (493)
Q Consensus 255 pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~~~~~pllvlggGGY~~~~var~w~~~t~~llg~~~~~ 334 (493)
|++++|+||+||+|||||++.+||||+|+||++||++|+++++++++|+|++|||||++++++|||+++|++++|.++++
T Consensus 242 p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~l~~~~~p~v~v~eGGY~~~~var~w~~~~a~l~g~~~~~ 321 (376)
T 4a69_A 242 QVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISE 321 (376)
T ss_dssp HHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHHHHTTCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHHHHHcCCCEEEEECCCCChhHHHHHHHHHHHHhcCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhcccCCCCccccC-CCCCCCcCcHHHHHHHHHHHHHHhhcCCCCCCcc
Q 011109 335 KMPQHEYYEYFGPDYTLHVA-PSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQ 388 (493)
Q Consensus 335 ~iP~~~~~~~~~p~~~l~~~-~~~~~~~n~~~~le~i~~~~~~~l~~l~~~p~v~ 388 (493)
++|+++|++||+|+|+|++. +++|+|+|+++|||+|+++|+|||++|+++||||
T Consensus 322 ~~P~~~~~~~~~p~~~l~~~~~~~~~~~n~~~~l~~~~~~~~~~l~~~~~~p~~~ 376 (376)
T 4a69_A 322 ELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQ 376 (376)
T ss_dssp BCCCCTTGGGGTTTCBSSCCCCCCSCCCCCHHHHHHHHHHHHHHHHTTC------
T ss_pred CCCCchHHHHhCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 99999999999999999998 8999999999999999999999999999999998
No 2
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=100.00 E-value=2e-113 Score=886.74 Aligned_cols=367 Identities=68% Similarity=1.279 Sum_probs=355.8
Q ss_pred CCCeEEEEECCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCchhhHH
Q 011109 15 VKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQD 94 (493)
Q Consensus 15 ~~~~v~~~yd~~~~~~~~g~~HPe~P~R~~~i~~ll~~~gL~~~~~v~~p~~As~eeL~~vHs~~YI~~L~~~~~~~~~~ 94 (493)
.|+||+|+|||++++|++|++|||+|+|+++++++|.++||++++++++|++|+.++|++||+++||++|++.+++...+
T Consensus 1 ~~~~v~~~y~~~~~~~~~g~~HPe~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~ 80 (367)
T 3max_A 1 AKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSE 80 (367)
T ss_dssp CCCCEEEECCGGGGGCCCCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCGGGGGG
T ss_pred CCCeEEEEECccccCcCCCCCCCCCHHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhhCCHHHHHHHHHhCccccch
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999988765443
Q ss_pred HHHhhhhcccCCCCcCCcchHHHHHHHHHHHHHHHHHHhcCccceeeecCCCCCCccccCCCcceeecHHHHHHHHHHhc
Q 011109 95 QLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQ 174 (493)
Q Consensus 95 ~~~~l~~~~~~~Dcpvf~gl~~~~~~~aGgsl~aa~~L~~g~~~iAin~~GG~HHA~~~~AsGFCy~NdvaIAi~~llk~ 174 (493)
..+.+.+|+++.|||+|+++|++|+++|||+|.||+++++++.++|+||+||+|||++++|+||||||||||||++|++.
T Consensus 81 ~~~~~~~~~l~~Dtp~~~~~~e~a~~aaGgsl~aa~~v~~~~~~~Ai~~pgG~HHA~~~~a~GFC~~NdvaiAa~~l~~~ 160 (367)
T 3max_A 81 YSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKY 160 (367)
T ss_dssp CHHHHHHTTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBCSCHHHHHHHHHTTT
T ss_pred hhhHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCcceEecCCCCCCcCCcCCCCCchhhhHHHHHHHHHHHc
Confidence 33446678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEccccCChhhhhhhhcCCCEEEeecCCCCCCCCCCCCCCcccCCCCCccEeecCCCCCCChHHHHHHHHHHHH
Q 011109 175 HERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIG 254 (493)
Q Consensus 175 ~~RVl~VDiDvHHGDGtqeaF~~d~rVltiS~H~~g~ffPgTG~~~eiG~g~G~g~~vNVPL~~G~~D~~yl~~f~~iv~ 254 (493)
++||||||||||||||||++||+|++|||+|||+++.||||||..+++|.|+|++|++|||||+|++|++|+.+|+++|.
T Consensus 161 ~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~fPgtg~~~e~G~g~g~g~~vNvPL~~g~~d~~y~~~~~~~~~ 240 (367)
T 3max_A 161 HQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIIS 240 (367)
T ss_dssp CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSSCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCCchhhHHhcCCCCEEEEecccCCCCCCCCCCccccCCCCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred hHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCCchhhHHHHHHHHHHcCCCCCC
Q 011109 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDD 334 (493)
Q Consensus 255 pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~~~~~pllvlggGGY~~~~var~w~~~t~~llg~~~~~ 334 (493)
|++++|+||+||+|||||++.+||||+|+||.+||.+|+++++++++|+|+||||||++++|+|||+++|++++|.++|+
T Consensus 241 ~~~~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~g~~~~~~~~~~~~~p~v~~~eGGY~~~~var~wt~~ta~~~~~~i~~ 320 (367)
T 3max_A 241 KVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPN 320 (367)
T ss_dssp HHHHHHCCSEEEEECCGGGBTTCSSCCCCBCHHHHHHHHHHHHTTCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHhCCCEEEEECCccCcCCCCCCCeeeCHHHHHHHHHHHHhcCCCEEEEeCCCCChhHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhcccCCCCccccCCCCCCCcCcHHHHHHHHHHHHHHhhcC
Q 011109 335 KMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKL 381 (493)
Q Consensus 335 ~iP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~le~i~~~~~~~l~~l 381 (493)
++|+|+||+||||+|+|++.+++|+|+|+++|||+|+++++|||++|
T Consensus 321 ~~p~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~~ 367 (367)
T 3max_A 321 ELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRML 367 (367)
T ss_dssp BCCCCTTGGGGTTTCBSSCCCCSCCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred CCCchhhHHhhCCCeeccCCcccccCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999986
No 3
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=100.00 E-value=4.3e-110 Score=866.24 Aligned_cols=371 Identities=42% Similarity=0.826 Sum_probs=347.4
Q ss_pred CCCCCCeEEEEECCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCchh
Q 011109 12 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPET 91 (493)
Q Consensus 12 ~~~~~~~v~~~yd~~~~~~~~g~~HPe~P~R~~~i~~ll~~~gL~~~~~v~~p~~As~eeL~~vHs~~YI~~L~~~~~~~ 91 (493)
...+|+||+|+|||+|++| +++|||+|+|+++++++|+++||++.+++++|++|+.++|++||+++||++|++.++..
T Consensus 9 ~~~~~~~~~~~y~~~~~~~--~~~HPe~P~Rl~~i~~ll~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~ 86 (388)
T 3ew8_A 9 DSGQSLVPVYIYSPEYVSM--CDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEG 86 (388)
T ss_dssp -----CCCEEECCHHHHHH--HTTCTTSTTHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHC
T ss_pred ccCCCCcEEEEEChHHhcc--CCCCCCCcHHHHHHHHHHHHcCCcccCeEeCCCCCCHHHHHhhCCHHHHHHHHHhcccc
Confidence 3456789999999999987 47799999999999999999999999999999999999999999999999999876543
Q ss_pred hHHHHHhhhhcccCCCCcCCcchHHHHHHHHHHHHHHHHHHhcCccceeeecCCCCCCccccCCCcceeecHHHHHHHHH
Q 011109 92 QQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILEL 171 (493)
Q Consensus 92 ~~~~~~~l~~~~~~~Dcpvf~gl~~~~~~~aGgsl~aa~~L~~g~~~iAin~~GG~HHA~~~~AsGFCy~NdvaIAi~~l 171 (493)
... .....+|+++.|||+|+++|++|+++|||+|.||+++++|++++||||+||+|||++++|+||||||||||||++|
T Consensus 87 ~~~-~~~~~~~~lg~Dtp~~~~~~e~a~~aaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~~NdiaiAa~~l 165 (388)
T 3ew8_A 87 DDD-HPDSIEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRL 165 (388)
T ss_dssp ---------CCSCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHH
T ss_pred ccc-chhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHcCCCceeeecCCcccceeecCCCCchhhhHHHHHHHHH
Confidence 211 1234578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEEccccCChhhhhhhhcCCCEEEeecCCCC-CCCCCCCCCCcccCCCCCccEeecCCCCCCChHHHHHHHH
Q 011109 172 LKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFK 250 (493)
Q Consensus 172 lk~~~RVl~VDiDvHHGDGtqeaF~~d~rVltiS~H~~g-~ffPgTG~~~eiG~g~G~g~~vNVPL~~G~~D~~yl~~f~ 250 (493)
++.++||||||||||||||||++||+|++|||+|||+++ .||||||..+++|.|+|++|++|||||+|++|++|+.+|+
T Consensus 166 ~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~d~~y~~~~~ 245 (388)
T 3ew8_A 166 RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICE 245 (388)
T ss_dssp TTTCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHH
T ss_pred HhcCCeEEEEecCCCCChhHHHHhccCCCEEEEecCCCCCCCCCCCCCcccccCCCCcceeeeccCCCCCCHHHHHHHHH
Confidence 998999999999999999999999999999999999994 5999999999999999999999999999999999999999
Q ss_pred HHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCCchhhHHHHHHHHHHcCC
Q 011109 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGV 330 (493)
Q Consensus 251 ~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~~~~~pllvlggGGY~~~~var~w~~~t~~llg~ 330 (493)
++|.|++++|+||+||||||||++.+||||+|+||++||++|+++|+++++|+++++||||++++|||||+++|++|+|.
T Consensus 246 ~~l~p~~~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~~~p~l~~~gGGY~~~~var~w~~~~~~l~g~ 325 (388)
T 3ew8_A 246 SVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGK 325 (388)
T ss_dssp HHHHHHHHHHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCCCSHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCCChhHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCchhhcccCCCCccccCCCCCCCcCcHHHHHHHHHHHHHHhhcCCCCC
Q 011109 331 EVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAP 385 (493)
Q Consensus 331 ~~~~~iP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~le~i~~~~~~~l~~l~~~p 385 (493)
++|++||+++||+||+|+|+|++.+++|+|+|+++||++|+++|++||++|++..
T Consensus 326 ~l~~~lP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~~~~~~ 380 (388)
T 3ew8_A 326 TLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVVIEG 380 (388)
T ss_dssp CCCSBCCCCTTGGGGTTTCBSCCCCCSCCCCCCHHHHHHHHHHHHHHHTTCCC--
T ss_pred CCCCCCCcccchhhcCCCccccCCcccCCCCCCHHHHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999999999999998764
No 4
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=100.00 E-value=9.6e-91 Score=721.34 Aligned_cols=319 Identities=33% Similarity=0.539 Sum_probs=300.4
Q ss_pred CeEEEEECCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCchhhHHHH
Q 011109 17 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQL 96 (493)
Q Consensus 17 ~~v~~~yd~~~~~~~~g~~HPe~P~R~~~i~~ll~~~gL~~~~~v~~p~~As~eeL~~vHs~~YI~~L~~~~~~~~~~~~ 96 (493)
++++|+|||+|..|.+|++|||+|.|+++++++|+++||++.+++++|++|+.++|++||+++||++|++.++.... ..
T Consensus 2 ~~t~~vy~~~~~~h~~g~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~at~~~l~~vH~~~Yv~~l~~~~~~~~~-~~ 80 (375)
T 1c3p_A 2 KKVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERCQCV-PK 80 (375)
T ss_dssp CCEEEEECGGGGGSCCCTTCGGGSCCHHHHHHHHHHTTCCCGGGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSC-CT
T ss_pred ceEEEEECHHHcCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCeEeCCCCCCHHHHHHhCCHHHHHHHHHhccccCC-Ch
Confidence 46899999999999999999999999999999999999999999999999999999999999999999876542100 00
Q ss_pred Hhhhhccc-CCCCcCCcchHHHHHHHHHHHHHHHHHHhcCccceeeecCCCCCCccccCCCcceeecHHHHHHHHHHhcC
Q 011109 97 RQLKRFNV-GEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH 175 (493)
Q Consensus 97 ~~l~~~~~-~~Dcpvf~gl~~~~~~~aGgsl~aa~~L~~g~~~iAin~~GG~HHA~~~~AsGFCy~NdvaIAi~~llk~~ 175 (493)
..+.+|++ +.|||+|+++|++|+++|||+|.||+++++|+ +||||+||+|||++++|+||||||||||||++|+++.
T Consensus 81 ~~~~~~~l~~~dtp~~~~~~~~a~~aaGg~l~aa~~v~~g~--~a~~ppGG~HHA~~~~a~GFC~fNnvAiAa~~l~~~g 158 (375)
T 1c3p_A 81 GAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGN--VAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKG 158 (375)
T ss_dssp THHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTC--EEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHTT
T ss_pred HHhhccccCCCCcccChhHHHHHHHHhhHHHHHHHHHHcCC--ceeecCcccceeeeccCCCceeecHHHHHHHHHHHhC
Confidence 12356777 68999999999999999999999999999997 8999999999999999999999999999999999876
Q ss_pred -CcEEEEEccccCChhhhhhhhcCCCEEEeecCCCCC-CCCCCCCCCccc-CCCCCccEeecCCCCCCChHHHHHHHHHH
Q 011109 176 -ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGD-YFPGTGDIRDIG-YSKGKFYSLNVPLDDGIDDESYHYLFKPI 252 (493)
Q Consensus 176 -~RVl~VDiDvHHGDGtqeaF~~d~rVltiS~H~~g~-ffPgTG~~~eiG-~g~G~g~~vNVPL~~G~~D~~yl~~f~~i 252 (493)
+||||||||||||||||++||+||+|||+|+|+++. ||||||..+++| .|+|++|++|||||+|++|++|+.+|+++
T Consensus 159 ~~RV~IvD~DvHHGnGtq~iF~~dp~Vl~~SiH~~~~~ffPgtG~~~e~G~~g~g~g~~vNvPL~~g~~D~~yl~a~~~~ 238 (375)
T 1c3p_A 159 FKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKS 238 (375)
T ss_dssp CCCEEEEECSSSCCHHHHHHHTTCSSEEEEEEEECTTTSTTSSSCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHhccCCCEEEEecccCCCCCCCCCCCccccCCcCCCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence 799999999999999999999999999999999965 799999999999 99999999999999999999999999999
Q ss_pred HHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCCchhhHHHHHHHHHHcCCCC
Q 011109 253 IGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEV 332 (493)
Q Consensus 253 v~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~~~~~pllvlggGGY~~~~var~w~~~t~~llg~~~ 332 (493)
|.|++++|+||+||||||||++.+||||+|+||.+||.+++++|+++..|++++|||||++++++|||++++++|+|.++
T Consensus 239 l~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~ 318 (375)
T 1c3p_A 239 LEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALARAWTLIWCELSGREV 318 (375)
T ss_dssp HHHHHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHHHHHHHHHCSCEEECCCCCCHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHHhccceEEEECCCCChHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred CCCCCC
Q 011109 333 DDKMPQ 338 (493)
Q Consensus 333 ~~~iP~ 338 (493)
|+.+|.
T Consensus 319 ~~~lp~ 324 (375)
T 1c3p_A 319 PEKLNN 324 (375)
T ss_dssp CSSCCH
T ss_pred CccCCH
Confidence 988996
No 5
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=100.00 E-value=2e-87 Score=695.14 Aligned_cols=315 Identities=23% Similarity=0.387 Sum_probs=296.2
Q ss_pred CeEEEEECCCCCCCCCCCC----------------CCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHH
Q 011109 17 RKVCYFYDPEVGNYYYGQG----------------HPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDY 80 (493)
Q Consensus 17 ~~v~~~yd~~~~~~~~g~~----------------HPe~P~R~~~i~~ll~~~gL~~~~~v~~p~~As~eeL~~vHs~~Y 80 (493)
++++|+|||+|..|.+++. |||+|.|+++++++|+++||++.+++++|++|+.++|++||+++|
T Consensus 1 m~t~~~y~~~~~~h~~~~~~~~~~~~g~~~~~~~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~~~l~~vH~~~Y 80 (369)
T 1zz1_A 1 MAIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAH 80 (369)
T ss_dssp -CEEEECCGGGGGCCCCSSSSSCCBTTTTBCCCSSCTTCTHHHHHHHHHHHHTTGGGGSEECCCCCCCHHHHHTTSCHHH
T ss_pred CeEEEEEchHHcccCCCCcccccccccccccccCCCCCCHHHHHHHHHHHHhcCCCccceEeCCCcCCHHHHHHhccHHH
Confidence 3689999999999999998 999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCc-hhhHHHHHhhhhcccCC-CCcCCcchHHHHHHHHHHHHHHHHHHhcCccc--eeeecCCCCCCccccCCC
Q 011109 81 VSFLRSITP-ETQQDQLRQLKRFNVGE-DCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCD--IAINWAGGLHHAKKCEAS 156 (493)
Q Consensus 81 I~~L~~~~~-~~~~~~~~~l~~~~~~~-Dcpvf~gl~~~~~~~aGgsl~aa~~L~~g~~~--iAin~~GG~HHA~~~~As 156 (493)
|++|++.++ + ..+.++. |||+++++|++|++++||+|.||+++++|+++ +|+||||| |||++++++
T Consensus 81 v~~l~~~~~~~---------~~~~l~~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~~~~afa~~rppG-HHA~~~~a~ 150 (369)
T 1zz1_A 81 LENMKRVSNLP---------TGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPG-HHAPHNAAM 150 (369)
T ss_dssp HHHHHHHHHST---------TCEECSSSSCEECTTTHHHHHHHHHHHHHHHHHHHTTSCSEEEECCSSCC-TTCCTTCCB
T ss_pred HHHHHHhCccc---------cceecCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEecCCc-cCcCCCCCC
Confidence 999987643 1 2244777 99999999999999999999999999999876 46899999 999999999
Q ss_pred cceeecHHHHHHHHHHhcC--CcEEEEEccccCChhhhhhhhcCCCEEEeecCCCCCCCC-CCCCCCcccCCCCCccEee
Q 011109 157 GFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFP-GTGDIRDIGYSKGKFYSLN 233 (493)
Q Consensus 157 GFCy~NdvaIAi~~llk~~--~RVl~VDiDvHHGDGtqeaF~~d~rVltiS~H~~g~ffP-gTG~~~eiG~g~G~g~~vN 233 (493)
||||||||||||++|++++ +||||||||||||||||++||+||+|||+|+|+++ ||| +||..+++|.|+|++|++|
T Consensus 151 GFC~fNnvAiAa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~~-~yP~~tG~~~e~G~g~g~g~~vN 229 (369)
T 1zz1_A 151 GFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHL-CFPPDSGYSTERGAGNGHGYNIN 229 (369)
T ss_dssp TTBSSCHHHHHHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEETT-SSSTTCCCTTCCCCGGGTTCEEE
T ss_pred CchHhhHHHHHHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccCCC-CCCCCCCcccccCCCCCCceEEe
Confidence 9999999999999999874 89999999999999999999999999999999997 999 9999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhc-----CCCEEEEeC
Q 011109 234 VPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF-----NVPLLLLGG 308 (493)
Q Consensus 234 VPL~~G~~D~~yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~~~-----~~pllvlgg 308 (493)
||||+|++|++|+.+|+++|.|++++|+||+||||||||++.+||||.|+||.+||.+++++|+++ ++|+++++|
T Consensus 230 vPL~~g~~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~~~~g~vv~vle 309 (369)
T 1zz1_A 230 VPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQE 309 (369)
T ss_dssp EEECTTCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred eecCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999999988753 799999999
Q ss_pred CCCCCchhhHHHHHHHHHHcCCCCCCCCCCchhhc
Q 011109 309 GGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYE 343 (493)
Q Consensus 309 GGY~~~~var~w~~~t~~llg~~~~~~iP~~~~~~ 343 (493)
|||+++++++||++++..|+|.++ ...|..+|++
T Consensus 310 GGY~~~~l~~~~~~~~~~l~g~~~-~~~p~~~~~~ 343 (369)
T 1zz1_A 310 GGYSPHYLPFCGLAVIEELTGVRS-LPDPYHEFLA 343 (369)
T ss_dssp CCCCTTTHHHHHHHHHHHHHCCCC-CCCTTHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHhCCCC-CCCchhHHHh
Confidence 999999999999999999999887 6667777765
No 6
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=100.00 E-value=7.2e-87 Score=700.12 Aligned_cols=364 Identities=23% Similarity=0.363 Sum_probs=313.8
Q ss_pred CCCeEEEEECCCCCCCCCC----CCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCch
Q 011109 15 VKRKVCYFYDPEVGNYYYG----QGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPE 90 (493)
Q Consensus 15 ~~~~v~~~yd~~~~~~~~g----~~HPe~P~R~~~i~~ll~~~gL~~~~~v~~p~~As~eeL~~vHs~~YI~~L~~~~~~ 90 (493)
.+++|+++||++|..|..+ ..|||+|+|+++|+++|+++||.+++++++|++|+.++|++||+++||++++.....
T Consensus 6 p~~~Tg~vyd~~~l~H~~~~g~~~~HPE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~eeL~~vHs~~Yv~~~~~~~~~ 85 (413)
T 2vqm_A 6 PRFTTGLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLN 85 (413)
T ss_dssp CCSSEEEECCGGGCSCCCTTC-------CCCHHHHHHHHHHHHTHHHHSEEECCCCCCHHHHTTTSCHHHHHHHHSCGGG
T ss_pred CCCeEEEEEcHHHhccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCeEeCCCCCCHHHHHHhCCHHHHHHHhcCchh
Confidence 3578999999999999865 459999999999999999999999999999999999999999999999888753211
Q ss_pred hh--H--H----HHHhh-----hhcccCCCCcCCc-chHHHHHHHHHHHHHHHHHHhcCcccee--eecCCCCCCccccC
Q 011109 91 TQ--Q--D----QLRQL-----KRFNVGEDCPVFD-GLFSFCQTYAGGSVGGAVKLNHGLCDIA--INWAGGLHHAKKCE 154 (493)
Q Consensus 91 ~~--~--~----~~~~l-----~~~~~~~Dcpvf~-gl~~~~~~~aGgsl~aa~~L~~g~~~iA--in~~GG~HHA~~~~ 154 (493)
.. . . ..... ..+.++.|+++.. ++++++++++|++|.|++++++|+++.| ++|||| |||++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dt~~~~~~s~~aA~laaG~~l~a~~~v~~g~~~~afa~vrppG-HHA~~~~ 164 (413)
T 2vqm_A 86 RQKLDSKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPG-HHAEEST 164 (413)
T ss_dssp GCC----HHHHHHHHHEEECTTSCEEECTTSTHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCCSCC-TTCBTTB
T ss_pred hhHhhhhhhccchhhhhhccccCCcCccCCccccchhHHHHHHHHHHHHHHHHHHHhcCCccceeeeccccc-ccCcCCC
Confidence 10 0 0 00000 1123445665544 6889999999999999999999988754 567887 9999999
Q ss_pred CCcceeecHHHHHHHHHHhcC--CcEEEEEccccCChhhhhhhhcCCCEEEeecCCC--CCCCCCCCCCCcccCCCCCcc
Q 011109 155 ASGFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFY 230 (493)
Q Consensus 155 AsGFCy~NdvaIAi~~llk~~--~RVl~VDiDvHHGDGtqeaF~~d~rVltiS~H~~--g~ffPgTG~~~eiG~g~G~g~ 230 (493)
|+||||||||||||++|++.+ +||||||||||||||||++||+|++|||+|+|++ +.||||||..+|+|.|.|++|
T Consensus 165 a~GFC~~Nnvaiaa~~~~~~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~f~pgtG~~~e~G~g~g~g~ 244 (413)
T 2vqm_A 165 PMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGF 244 (413)
T ss_dssp CBTTBSSCHHHHHHHHHHHHSCCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGCSTTCCCCTTCCCSGGGTTC
T ss_pred CCCccccchHHHHHHHHHHhcCCCeEEEEecccCCCccHHHHHhcCcccccccchhccCCCCCCCCCCHHHcCCCccccc
Confidence 999999999999999998764 8999999999999999999999999999999998 469999999999999999999
Q ss_pred EeecCCCC----CCChHHHHHHHHHHHHhHhhhcCCCEEEEecCCCCCCC--CCCCccccCHHHHHHHHHHHHhc-CCCE
Q 011109 231 SLNVPLDD----GIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSG--DRLGCFNLSIKGHAECVKFMRSF-NVPL 303 (493)
Q Consensus 231 ~vNVPL~~----G~~D~~yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~g--DpLG~~nLT~~g~~~~v~~l~~~-~~pl 303 (493)
++||||+. |++|++|+.+|+.+|.|++++|+||+||||||||++.+ ||||+|+||.++|++++++|+++ ++|+
T Consensus 245 ~~n~pl~~g~~~~~~D~~y~~~~~~~v~p~~~~f~PdlivvsaG~Da~~~d~D~lg~~~lt~~~~~~~~~~l~~~a~~~~ 324 (413)
T 2vqm_A 245 NVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGRI 324 (413)
T ss_dssp EEEEEECSCSSSCCCHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBSSCTTTTCCCCBCHHHHHHHHHHHHTSGGGCE
T ss_pred ccccccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcCCCCCCCCCcccCHHHHHHHHHHHHHhcCCCE
Confidence 99999875 58899999999999999999999999999999999999 66999999999999999999987 8999
Q ss_pred EEEeCCCCCCchhhHHHHHHHHHHcCCCCCCCCCCchhhcccCCCCccccCCCCCCCcCcHHHHHHHHHHHHHHhhcCCC
Q 011109 304 LLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQH 383 (493)
Q Consensus 304 lvlggGGY~~~~var~w~~~t~~llg~~~~~~iP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~le~i~~~~~~~l~~l~~ 383 (493)
+++|||||+++++++||++++++|+|.+++ .+|+ ..+. ..++.|+.++|+++++...+.|+.|+.
T Consensus 325 v~vleGGY~~~~l~~~~~~~~~~l~g~~~~-~~p~----------~~~~----~~p~~~~~~~~~~v~~~~~~~W~~l~~ 389 (413)
T 2vqm_A 325 VLALEGGHDLTAICDASEACVSALLGNELD-PLPE----------KVLQ----QRPNANAVRSMEKVMEIHSKYWRCLQR 389 (413)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTTCCCC-CCCH----------HHHH----CCCCHHHHHHHHHHHHHHHTTCGGGTS
T ss_pred EEEeCcCCChHHHHHHHHHHHHHHcCCCCC-CCCh----------hhhh----cCCChHHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999998764 2332 2222 235889999999999999999999999
Q ss_pred CCCcccccCCC
Q 011109 384 APSVQFQERPP 394 (493)
Q Consensus 384 ~p~v~~~~~~~ 394 (493)
+++++++.++.
T Consensus 390 ~~~~~~~~~~~ 400 (413)
T 2vqm_A 390 TTSTAGRSLIE 400 (413)
T ss_dssp CCCCTTSCHHH
T ss_pred chhhcCcCcch
Confidence 99999987654
No 7
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=100.00 E-value=1.8e-84 Score=665.25 Aligned_cols=305 Identities=20% Similarity=0.331 Sum_probs=280.7
Q ss_pred EEEECCCCCCCCCCC--------CCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCchh
Q 011109 20 CYFYDPEVGNYYYGQ--------GHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPET 91 (493)
Q Consensus 20 ~~~yd~~~~~~~~g~--------~HPe~P~R~~~i~~ll~~~gL~~~~~v~~p~~As~eeL~~vHs~~YI~~L~~~~~~~ 91 (493)
-+||||++..|..+. .|||+|+|+++|+++|+++||. ++++|++|+.++|++||+++||++|++.++++
T Consensus 2 ~~v~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl~---~~~~p~~at~e~L~~vHs~~Yi~~l~~~~~~~ 78 (341)
T 3q9b_A 2 RVIFSEDHKLRNAKTELYGGELVPPFEAPFRAEWILAAVKEAGFD---DVVAPARHGLETVLKVHDAGYLNFLETAWDRW 78 (341)
T ss_dssp EEECCGGGGGCCCSCEEETTEEECCSSCTHHHHHHHHHHHHTTCC---CEECCCCCCSTTGGGTSCHHHHHHHHHHHHHH
T ss_pred EEEECcHHhccCCcccccCCCcCCCCCChHHHHHHHHHHHhCCCC---ceeCCCCCCHHHHHHhCCHHHHHHHHHhhhhh
Confidence 368999999998875 6999999999999999999985 68999999999999999999999999875432
Q ss_pred hH-----------------------HHHHhhhhcccCCCCcCCcchHHHHHHHHHHHHHHHHHHhcCc-cceeeecCCCC
Q 011109 92 QQ-----------------------DQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGL-CDIAINWAGGL 147 (493)
Q Consensus 92 ~~-----------------------~~~~~l~~~~~~~Dcpvf~gl~~~~~~~aGgsl~aa~~L~~g~-~~iAin~~GG~ 147 (493)
.. ....+...|+++.|||+++++|++|+++||++|.||++|++|+ ..+|++||||
T Consensus 79 ~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~g~~~~d~dt~~~~~~~~aa~~aaG~~l~a~~~v~~g~~~afal~rppG- 157 (341)
T 3q9b_A 79 KAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPG- 157 (341)
T ss_dssp HHTTCSSCBCCCBCCCTTCCCCCCSSHHHHHHHTBSBTTCCBCTTHHHHHHHHHHHHHHHHHHHHHTCSEEEECCSSCC-
T ss_pred hhcccccccccccccccccccccccchhcccceeccCCCCCcChhHHHHHHHHHHHHHHHHHHHHhCCCceEecCCCCC-
Confidence 11 0011234578899999999999999999999999999999985 5688999999
Q ss_pred CCccccCCCcceeecHHHHHHHHHHhc-CCcEEEEEccccCChhhhhhhhcCCCEEEeecCCCC-CCCCC-CCCCCcccC
Q 011109 148 HHAKKCEASGFCYVNDIVLAILELLKQ-HERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPG-TGDIRDIGY 224 (493)
Q Consensus 148 HHA~~~~AsGFCy~NdvaIAi~~llk~-~~RVl~VDiDvHHGDGtqeaF~~d~rVltiS~H~~g-~ffPg-TG~~~eiG~ 224 (493)
|||++++++||||||||||||++|+++ .+||||||||||||||||++||+|++|||+|+|+++ .|||+ ||..+++|.
T Consensus 158 HHA~~~~a~GFC~~NnvaiAa~~l~~~g~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G~ 237 (341)
T 3q9b_A 158 HHAGIDMFGGYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEETGK 237 (341)
T ss_dssp TTCBTTBBBTTBSSCHHHHHHHHHHHTTCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGSTTCSSCCTTCCCC
T ss_pred CCCCCCCCCCccccCHHHHHHHHHHHcCCCeEEEEecCCCCCcchhHHhcCCCCEEEEeccCCCccCCCCCCCcccccCC
Confidence 999999999999999999999999987 699999999999999999999999999999999994 69999 999999999
Q ss_pred CCCCccEeecCCCCCCChHHHHHHHHHHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEE
Q 011109 225 SKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLL 304 (493)
Q Consensus 225 g~G~g~~vNVPL~~G~~D~~yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~~~~~pll 304 (493)
|.|++|++|||||+|++|++|+.+|+.++ +++++|+||+||||||||++.+||||+|+||.+||.+|+++|+++++|++
T Consensus 238 g~g~g~~vNvpL~~g~~d~~y~~~~~~~l-~~l~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~~~~~v 316 (341)
T 3q9b_A 238 GAGAGTTANYPMGRGTPYSVWGEALTDSL-KRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASGVPLL 316 (341)
T ss_dssp GGGTTCEEEEEECTTCBHHHHHHHHHHHH-HHHHHHTCSCEEEEECCTTBTTCTTCCCBBCTTHHHHHHHHHHTTSSCEE
T ss_pred CCCCceeEeeecCCCCChHHHHHHHHHHH-HHHHhhCCCEEEEeCCccccCCCCCCCccCCHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999999999999976 67899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCchhhHHHHHHHHHHcC
Q 011109 305 LLGGGGYTIRNVARCWCYETGVALG 329 (493)
Q Consensus 305 vlggGGY~~~~var~w~~~t~~llg 329 (493)
+++||||+++++++||..++..+.|
T Consensus 317 ~vleGGY~~~~l~~~~~~~l~g~~~ 341 (341)
T 3q9b_A 317 VVMEGGYGVPEIGLNVANVLKGVAG 341 (341)
T ss_dssp EEECCCCCCTTHHHHHHHHHHHHHC
T ss_pred EEECCCCChHHHHHHHHHHHHHhcC
Confidence 9999999999999999998877643
No 8
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=7.5e-84 Score=664.46 Aligned_cols=306 Identities=24% Similarity=0.390 Sum_probs=282.2
Q ss_pred EEEEECCCCCCCCCCC--------CCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCch
Q 011109 19 VCYFYDPEVGNYYYGQ--------GHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPE 90 (493)
Q Consensus 19 v~~~yd~~~~~~~~g~--------~HPe~P~R~~~i~~ll~~~gL~~~~~v~~p~~As~eeL~~vHs~~YI~~L~~~~~~ 90 (493)
..+||||++..|..+. .|||+|+|+++|+++|+++|| ++++|++|+.++|++||+++||++|++.+++
T Consensus 22 M~~~~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl----~~~~p~~At~e~L~~vHs~~YI~~l~~~~~~ 97 (362)
T 3men_A 22 MLTYFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLVAAAFAMGF----PVREPDDFGIAPIAAVHDTHYLRFLETVHRE 97 (362)
T ss_dssp CEEECCGGGGGCCCCCEEETTEEECCCSCTHHHHHHHHHHHHTTC----CEECCCCCCSHHHHTTSCHHHHHHHHHHHHH
T ss_pred eEEEEChHHHhhCCccccccCCcCCCCCChHHHHHHHHHHHhCCC----eEeCCCCCCHHHHHHhCCHHHHHHHHHhhhh
Confidence 3589999999999875 799999999999999999997 7899999999999999999999999876532
Q ss_pred hhH----------------------HHHHhhhhcccCCCCcCCcchHHHHHHHHHHHHHHHHHHhcCc-cceeeecCCCC
Q 011109 91 TQQ----------------------DQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGL-CDIAINWAGGL 147 (493)
Q Consensus 91 ~~~----------------------~~~~~l~~~~~~~Dcpvf~gl~~~~~~~aGgsl~aa~~L~~g~-~~iAin~~GG~ 147 (493)
... ........+.++.|||+++++|++|++++|++|.||++|++|+ ..+|++||||
T Consensus 98 ~~~~~~~~~~e~~p~~~p~~~~~p~~~~~~~g~~~~d~Dtpv~~~~~~aa~~aaG~~l~aa~~v~~g~~~afal~rPpG- 176 (362)
T 3men_A 98 WKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPG- 176 (362)
T ss_dssp HHTSCGGGCSSBCCCBCCCSSCCCCSHHHHHHHHBCBTTCCBCTTHHHHHHHHHHHHHHHHHHHHTTCSEEEECCSSCC-
T ss_pred hhhcccccccccccccccccccccccccccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCC-
Confidence 211 0001123467889999999999999999999999999999995 5688999999
Q ss_pred CCccccCCCcceeecHHHHHHHHHHhcCCcEEEEEccccCChhhhhhhhcCCCEEEeecCCCC-CCCCC-CCCCCcccCC
Q 011109 148 HHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPG-TGDIRDIGYS 225 (493)
Q Consensus 148 HHA~~~~AsGFCy~NdvaIAi~~llk~~~RVl~VDiDvHHGDGtqeaF~~d~rVltiS~H~~g-~ffPg-TG~~~eiG~g 225 (493)
|||++++++||||||||||||++|+++++||||||||||||||||++||+|++|||+|||+++ .|||+ ||..+|+|.|
T Consensus 177 HHA~~~~a~GFC~fNnvAiAa~~l~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G~g 256 (362)
T 3men_A 177 HHARVDAAGGFCYLNNAAIAAQALRARHARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPAVAGFDDERGAG 256 (362)
T ss_dssp TTCBTTBBBTTBSSCHHHHHHHHHTTTCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTTSTTCSSCCTTCCCSG
T ss_pred CCCCCCCCCCccccCHHHHHHHHHHHcCCeEEEEeCcCCCchhHhHHhcCCCCEEEEEecCCCccCCCCCCCccccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999994 69999 9999999999
Q ss_pred CCCccEeecCCCCCCChHHHHHHHHHHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEE
Q 011109 226 KGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLL 305 (493)
Q Consensus 226 ~G~g~~vNVPL~~G~~D~~yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~~~~~pllv 305 (493)
.|++|++|||||+|++|++|+.+|+.++ +++++|+||+||||||||++.+||||+|+||.+||.+|+++|+++++|+++
T Consensus 257 ~g~g~~vNvPL~~g~~d~~yl~~~~~~l-~~l~~f~PdlIvvsaG~Da~~~Dplg~l~lt~~~~~~~~~~l~~~~~~~v~ 335 (362)
T 3men_A 257 EGLGYNVNLPMPHGSSEAAFFERVDDAL-RELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVI 335 (362)
T ss_dssp GGTTSEEEEEECTTBCHHHHHHHHHHHH-HHHHHHCCSEEEEEECSTTBTTCTTCCBCBCHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCceeEeeccCCCCChHHHHHHHHHHH-HHHHhcCCCEEEEECcccCcCCCCCCCccCCHHHHHHHHHHHHhhCCCEEE
Confidence 9999999999999999999999999976 678999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCchhhHHHHHHHHHHcCC
Q 011109 306 LGGGGYTIRNVARCWCYETGVALGV 330 (493)
Q Consensus 306 lggGGY~~~~var~w~~~t~~llg~ 330 (493)
++||||+++++++|+..++..+.+.
T Consensus 336 vleGGY~~~~l~~~~~a~l~~l~~~ 360 (362)
T 3men_A 336 VQEGGYHIESLEANARSFFGGFGAL 360 (362)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTC-
T ss_pred EECCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999988763
No 9
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=100.00 E-value=3.4e-83 Score=669.02 Aligned_cols=353 Identities=23% Similarity=0.365 Sum_probs=302.7
Q ss_pred CCeEEEEECCCCCCCC----CCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcC--c
Q 011109 16 KRKVCYFYDPEVGNYY----YGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSIT--P 89 (493)
Q Consensus 16 ~~~v~~~yd~~~~~~~----~g~~HPe~P~R~~~i~~ll~~~gL~~~~~v~~p~~As~eeL~~vHs~~YI~~L~~~~--~ 89 (493)
..+++|+||++|..|. .++.|||+|.|+++|+++|+++||++.+++++|++|+.+||++||+++||+.+.... .
T Consensus 35 ~~~t~~vyd~~~l~H~~~~~~~~~HPE~P~Rl~~i~~~L~~~Gl~~~~~~~~p~~At~eeL~~vHs~~YI~~~~~~~l~~ 114 (421)
T 2pqp_A 35 PFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSR 114 (421)
T ss_dssp TTCEEEECCGGGGGCCCTTCCTTSCSSCTHHHHHHHHHHHHTTCGGGSEEECCCCCCHHHHTTTSCHHHHHHHHCCTTCS
T ss_pred CCeEEEEECHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhcCCHHHHHhhhcchhhh
Confidence 4689999999999998 678999999999999999999999999999999999999999999999998654211 0
Q ss_pred -hhhHH-HHH--hhh------h--cccCCCCcCCc-chHHHHHHHHHHHHHHHHHHhcCccc--eeeecCCCCCCccccC
Q 011109 90 -ETQQD-QLR--QLK------R--FNVGEDCPVFD-GLFSFCQTYAGGSVGGAVKLNHGLCD--IAINWAGGLHHAKKCE 154 (493)
Q Consensus 90 -~~~~~-~~~--~l~------~--~~~~~Dcpvf~-gl~~~~~~~aGgsl~aa~~L~~g~~~--iAin~~GG~HHA~~~~ 154 (493)
+.... ... ..+ . .+++.|++++. ++|+++++++|++|.|++++++|+++ +|++|||| |||++++
T Consensus 115 ~~~~~~~~~g~~~~~~~~~~p~gg~~~D~Dt~~~~~~s~~aa~~aaG~~~~a~~~v~~g~~~~afa~~rPpG-HHA~~~~ 193 (421)
T 2pqp_A 115 LKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPG-HHADHST 193 (421)
T ss_dssp CCCCHHHHHHHHSCCCCEECTTSCEESSSSCEECTTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCSSCC-TTCBTTB
T ss_pred hhhhcccccccchhhhhhhccccCcCCCCCcccCCccHHHHHHHHHhHHHHHHHHHHcCccccceeeCCCCC-CCCCCCC
Confidence 00000 000 000 1 13455777764 78999999999999999999999865 67789998 9999999
Q ss_pred CCcceeecHHHHHHHHHHhc--CCcEEEEEccccCChhhhhhhhcCCCEEEeecCCC--CCCCCCCCCCCcccCCCCCcc
Q 011109 155 ASGFCYVNDIVLAILELLKQ--HERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFY 230 (493)
Q Consensus 155 AsGFCy~NdvaIAi~~llk~--~~RVl~VDiDvHHGDGtqeaF~~d~rVltiS~H~~--g~ffPgTG~~~eiG~g~G~g~ 230 (493)
++||||||||||||++|+++ .+||||||||||||||||++||+|++|||||+|++ +.||||||..+++|.|.|+||
T Consensus 194 a~GFC~fNnvAiAa~~l~~~~~~~RV~ivD~DvHHGnGtq~iF~~dp~Vl~~S~H~~~~g~~yPgtG~~~e~G~g~g~g~ 273 (421)
T 2pqp_A 194 AMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGF 273 (421)
T ss_dssp CBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGTSTTCCCCTTCCCCGGGTTC
T ss_pred CCcchhhCHHHHHHHHHHHhcCCCeEEEEecCCCCChhHHHHhcCCCCEEEEecccCCCCCCCCCCCChhhccCCCCccc
Confidence 99999999999999999976 48999999999999999999999999999999998 469999999999999999999
Q ss_pred EeecCCCCC----CChHHHHHHHHHHHHhHhhhcCCCEEEEecCCCCCCCC--CCCccccCHHHHHHHHHHHHhc-CCCE
Q 011109 231 SLNVPLDDG----IDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGD--RLGCFNLSIKGHAECVKFMRSF-NVPL 303 (493)
Q Consensus 231 ~vNVPL~~G----~~D~~yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gD--pLG~~nLT~~g~~~~v~~l~~~-~~pl 303 (493)
++||||+.| ++|++|+.+|+.+|.|++++|+||+||||||||++.+| |||+|+||.++|+++++.|+++ ++|+
T Consensus 274 ~vNvPl~~gl~~g~~d~~yl~~~~~~l~p~~~~F~PdlIvvsaG~Da~~gD~dpLg~~~lt~~~y~~~~~~l~~~a~grv 353 (421)
T 2pqp_A 274 NVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAV 353 (421)
T ss_dssp EEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCCGGGCCCBBCHHHHHHHHHHHTTSGGGCE
T ss_pred eeccccCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCcccccccccccCCceeCHHHHHHHHHHHHHHcCCCE
Confidence 999999755 78999999999999999999999999999999999998 9999999999999999999887 8899
Q ss_pred EEEeCCCCCCchhhHHHHHHHHHHcCCCCCCCCCCchhhcccCCCCccccCCCCCCCcCcHHHHHHHHHHHHHHhhcCCC
Q 011109 304 LLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQH 383 (493)
Q Consensus 304 lvlggGGY~~~~var~w~~~t~~llg~~~~~~iP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~le~i~~~~~~~l~~l~~ 383 (493)
++++||||+++++++||+.++.+|+|.+++. +|... ....++.+..+.|++++....+.|+-|+.
T Consensus 354 v~vlEGGY~l~~l~~~~~a~~~~L~g~~~~~-l~~~~--------------~~~~p~~~a~~~i~~v~~~~~~yW~~l~~ 418 (421)
T 2pqp_A 354 VLALEGGHDLTAICDASEACVAALLGNRVDP-LSEEG--------------WKQKPNLNAIRSLEAVIRVHSKYWGCMQR 418 (421)
T ss_dssp EEEECSCCCHHHHHHHHHHHHHHHTTCCCCG-GGCGG--------------GGSCCCHHHHHHHHHHHHHHTTTCGGGCC
T ss_pred EEEECCCCChHHHHHHHHHHHHHHcCCCCCC-Ccccc--------------cccccCHHHHHHHHHHHHHHHHHhHHHHh
Confidence 9999999999999999999999999976531 22210 11235566777788887777777776664
Q ss_pred C
Q 011109 384 A 384 (493)
Q Consensus 384 ~ 384 (493)
.
T Consensus 419 ~ 419 (421)
T 2pqp_A 419 L 419 (421)
T ss_dssp -
T ss_pred h
Confidence 3
No 10
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=80.52 E-value=1.8 Score=39.51 Aligned_cols=50 Identities=14% Similarity=0.215 Sum_probs=32.1
Q ss_pred hhhcCCCEEEEecCC-CCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEE
Q 011109 257 MEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLL 306 (493)
Q Consensus 257 ~~~f~PdlIVvqaG~-Dsl~gDpLG~~nLT~~g~~~~v~~l~~~~~pllvl 306 (493)
+-.++|++|||.+|. |...+-+........+.+..+++.++..+.+++++
T Consensus 74 v~~~~Pd~vvi~~G~ND~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~iil~ 124 (209)
T 4hf7_A 74 VINLSPALVVINAGTNDVAENTGAYNEDYTFGNIASMAELAKANKIKVILT 124 (209)
T ss_dssp TGGGCCSEEEECCCHHHHTTSSSSCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHhcCCCEEEEEeCCCcCccccccccHHHHHHHHHHhhHHHhccCceEEEE
Confidence 345899999999997 44333322233334455667777777777776654
No 11
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=67.32 E-value=1.7 Score=36.22 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=47.6
Q ss_pred HHHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHH-----HHHHHHHHHhcCCCEEEE
Q 011109 250 KPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG-----HAECVKFMRSFNVPLLLL 306 (493)
Q Consensus 250 ~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g-----~~~~v~~l~~~~~pllvl 306 (493)
+++|..++++|+.++=|++++.|...+.++|.|-+...| ..+.+++|++.++.+=++
T Consensus 34 ~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v~vEvl 95 (98)
T 3ced_A 34 EPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVL 95 (98)
T ss_dssp HHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred chHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 578888999999999999999999999999998885554 566788888888766555
No 12
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=64.58 E-value=15 Score=32.21 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=30.0
Q ss_pred hHhhhcCCCEEEEecCCCCCCCCCCCccccCHHH----HHHHHHHHHhcCCCEEEE
Q 011109 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLLLL 306 (493)
Q Consensus 255 pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g----~~~~v~~l~~~~~pllvl 306 (493)
..+..++||+|||+.|..=.. . ..+.+. +.++++.+++.+.+++++
T Consensus 56 ~~~~~~~pd~Vii~~G~ND~~----~--~~~~~~~~~~l~~li~~~~~~~~~vil~ 105 (190)
T 1ivn_A 56 ALLKQHQPRWVLVELGGNDGL----R--GFQPQQTEQTLRQILQDVKAANAEPLLM 105 (190)
T ss_dssp HHHHHHCCSEEEEECCTTTTS----S--SCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHhcCCCEEEEEeeccccc----c--CCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 445568999999999964332 1 234444 455667777777776665
No 13
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=64.45 E-value=18 Score=32.03 Aligned_cols=64 Identities=11% Similarity=0.187 Sum_probs=37.6
Q ss_pred EeecCCCCCCChHHHHHHHHHHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHH----HHHHHHHhcC--CCEE
Q 011109 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHA----ECVKFMRSFN--VPLL 304 (493)
Q Consensus 231 ~vNVPL~~G~~D~~yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~----~~v~~l~~~~--~pll 304 (493)
..|.....+.+....+..++. .+...+||+||+.+|.. | +..+.+.|. ++++.+++.+ .+++
T Consensus 48 v~~~~~~~~~~~~~~~~~~~~----~~~~~~pd~Vvi~~G~N----D----~~~~~~~~~~~l~~ii~~l~~~~p~~~ii 115 (200)
T 4h08_A 48 VGRLSNSKSVGDPALIEELAV----VLKNTKFDVIHFNNGLH----G----FDYTEEEYDKSFPKLIKIIRKYAPKAKLI 115 (200)
T ss_dssp EEEEEESCCTTCHHHHHHHHH----HHHHSCCSEEEECCCSS----C----TTSCHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred EEEEeccCCccHHHHHHHHHH----HHhcCCCCeEEEEeeeC----C----CCCCHHHHHHHHHHHHHHHhhhCCCccEE
Confidence 344444445555566555544 44568999999999975 3 234555554 4666666653 3444
Q ss_pred EE
Q 011109 305 LL 306 (493)
Q Consensus 305 vl 306 (493)
++
T Consensus 116 ~~ 117 (200)
T 4h08_A 116 WA 117 (200)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 14
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=62.78 E-value=16 Score=32.74 Aligned_cols=70 Identities=13% Similarity=0.238 Sum_probs=38.7
Q ss_pred EeecCCCCCCChHHHHHHHHHHHHhHhhh-cCCCEEEEecCCCCCCCCCCCccccCHHHH----HHHHHHHHhcCCCEEE
Q 011109 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEV-FRPGAVVLQCGADSLSGDRLGCFNLSIKGH----AECVKFMRSFNVPLLL 305 (493)
Q Consensus 231 ~vNVPL~~G~~D~~yl~~f~~iv~pv~~~-f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~----~~~v~~l~~~~~pllv 305 (493)
.+|.... |.+-...+..+.. ++.. .+||+|||..|..=.... +....+.+.| .++++.+++.+.++++
T Consensus 46 v~n~g~~-G~~~~~~~~~~~~----~~~~~~~pd~vvi~~G~ND~~~~--~~~~~~~~~~~~~l~~~i~~~~~~~~~vil 118 (240)
T 3mil_A 46 ILQRGFK-GYTSRWALKILPE----ILKHESNIVMATIFLGANDACSA--GPQSVPLPEFIDNIRQMVSLMKSYHIRPII 118 (240)
T ss_dssp EEEEECT-TCCHHHHHHHHHH----HHHHCCCEEEEEEECCTTTTSSS--STTCCCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEecCcC-cccHHHHHHHHHH----HhcccCCCCEEEEEeecCcCCcc--CCCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 3454443 3333445555544 3333 799999999997333211 1223444444 4566677777777766
Q ss_pred Ee
Q 011109 306 LG 307 (493)
Q Consensus 306 lg 307 (493)
+.
T Consensus 119 ~~ 120 (240)
T 3mil_A 119 IG 120 (240)
T ss_dssp EC
T ss_pred Ec
Confidence 64
No 15
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=58.86 E-value=9.2 Score=33.60 Aligned_cols=48 Identities=10% Similarity=0.278 Sum_probs=29.3
Q ss_pred HhhhcCCCEEEEecCCCCCCCCCCCccccCHHHH----HHHHHHHHhcCCCEEEE
Q 011109 256 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGH----AECVKFMRSFNVPLLLL 306 (493)
Q Consensus 256 v~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~----~~~v~~l~~~~~pllvl 306 (493)
.+..++||+|||..|..=..... ...+.+.| .++++.+++.+.+++++
T Consensus 69 ~~~~~~pd~vvi~~G~ND~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~vil~ 120 (204)
T 3p94_A 69 DVINLKPKAVVILAGINDIAHNN---GVIALENVFGNLVSMAELAKANHIKVIFC 120 (204)
T ss_dssp HTGGGCEEEEEEECCHHHHTTTT---SCCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhCCCCEEEEEeecCcccccc---CCCCHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 34558999999999975333211 11344444 45666677767677666
No 16
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=58.81 E-value=10 Score=34.54 Aligned_cols=44 Identities=23% Similarity=0.404 Sum_probs=28.5
Q ss_pred HhhhcCCCEEEEecCCCCCCCCCCCccccCHH----HHHHHHHHHHhc--CCCEEEEe
Q 011109 256 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIK----GHAECVKFMRSF--NVPLLLLG 307 (493)
Q Consensus 256 v~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~----g~~~~v~~l~~~--~~pllvlg 307 (493)
++..++||+|||..|..=.. .+.+ .+.++++.+++. +.+++++.
T Consensus 88 ~l~~~~pd~vvi~~G~ND~~--------~~~~~~~~~l~~~i~~l~~~~p~~~ii~~~ 137 (232)
T 1es9_A 88 ELEHIRPKIVVVWVGTNNHG--------HTAEQVTGGIKAIVQLVNERQPQARVVVLG 137 (232)
T ss_dssp TTTTCCCSEEEEECCTTCTT--------SCHHHHHHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred ccccCCCCEEEEEeecCCCC--------CCHHHHHHHHHHHHHHHHHHCCCCeEEEec
Confidence 35568999999999974332 3444 445566667665 55666653
No 17
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=56.92 E-value=11 Score=38.88 Aligned_cols=69 Identities=16% Similarity=0.284 Sum_probs=45.5
Q ss_pred CCCCCCCh-HHHHHHHHHHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 011109 235 PLDDGIDD-ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGY 311 (493)
Q Consensus 235 PL~~G~~D-~~yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~~~~~pllvlggGGY 311 (493)
||-..+.. ..+..+|++.+ |-+++|+-..|||-.|-.++..+- .....+-+..+++.+.++++|-|||-
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~-~yi~~~~~~~iViK~GG~~l~~~~-------~~~~~~~i~~l~~~g~~vvlVhggg~ 85 (456)
T 3d2m_A 16 PRGSHMNAPDSFVAHFREAA-PYIRQMRGTTLVAGIDGRLLEGGT-------LNKLAADIGLLSQLGIRLVLIHGAYH 85 (456)
T ss_dssp ---------CCHHHHHHHHH-HHHHHHTTCEEEEEECGGGGTSTH-------HHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred cCcccCCchhHHHHHHHHhH-HHHHHhcCCEEEEEEChHHhcCch-------HHHHHHHHHHHHHCCCeEEEEeCCcH
Confidence 33333333 56888998875 778999999999999988876421 34455555556667878888888874
No 18
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=53.89 E-value=14 Score=34.87 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhHhhhcCCCEEEEecCC-CCCCCCCCCcc
Q 011109 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCF 282 (493)
Q Consensus 244 ~yl~~f~~iv~pv~~~f~PdlIVvqaG~-Dsl~gDpLG~~ 282 (493)
..+..|..++.. ...+||+|+|..|. |...+.+++.+
T Consensus 73 ~~~~~~~~~l~~--~~~~pd~V~I~~G~ND~~~~~~~~~~ 110 (274)
T 3bzw_A 73 DVPRQAEKLKKE--HGGEVDAILVFMGTNDYNSSVPIGEW 110 (274)
T ss_dssp GHHHHHHHHHHH--HTTTCCEEEEECCHHHHHTTCCCCCS
T ss_pred HHHHHHHHHHhc--cCCCCCEEEEEEecccCcccCCCccc
Confidence 355555553321 23789999999998 55555566543
No 19
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=52.85 E-value=34 Score=30.51 Aligned_cols=51 Identities=12% Similarity=0.153 Sum_probs=31.2
Q ss_pred HHHHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeC
Q 011109 249 FKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGG 308 (493)
Q Consensus 249 f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~~~~~pllvlgg 308 (493)
++.++. .+.+.+||+||+. ||= .......+.+.++++.+++.+.|++++.|
T Consensus 21 ~~~~~~-~~~~~~~D~vi~~-------GDl-~~~~~~~~~~~~~~~~l~~~~~pv~~v~G 71 (228)
T 1uf3_A 21 LEKFVK-LAPDTGADAIALI-------GNL-MPKAAKSRDYAAFFRILSEAHLPTAYVPG 71 (228)
T ss_dssp HHHHHT-HHHHHTCSEEEEE-------SCS-SCTTCCHHHHHHHHHHHGGGCSCEEEECC
T ss_pred HHHHHH-HHhhcCCCEEEEC-------CCC-CCCCCCHHHHHHHHHHHHhcCCcEEEECC
Confidence 444443 3445589988765 442 11222445666788888888889877754
No 20
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=52.60 E-value=2.7 Score=34.83 Aligned_cols=56 Identities=14% Similarity=0.345 Sum_probs=46.0
Q ss_pred HHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHH----HHHHHHHHHhcCCCEEEE
Q 011109 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLLLL 306 (493)
Q Consensus 251 ~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g----~~~~v~~l~~~~~pllvl 306 (493)
++|..++++|+.++=|++++.|...+.++|.|-+...| ..+.+.+|++.++.+=++
T Consensus 38 pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (100)
T 2qsw_A 38 PIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVI 97 (100)
T ss_dssp CHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred hHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCEEEEc
Confidence 67888899999999999999999999999998886554 556778888887755443
No 21
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=52.54 E-value=23 Score=30.43 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=35.3
Q ss_pred eecCCCCCCChHHHHHHHHHHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHH----HHHHHHhcCCCEEEEe
Q 011109 232 LNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAE----CVKFMRSFNVPLLLLG 307 (493)
Q Consensus 232 vNVPL~~G~~D~~yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~----~v~~l~~~~~pllvlg 307 (493)
+|.... |.+-..++..++ ..+...+||+|||+.|..=... ....+.+.|.+ +++.++ +.+++++.
T Consensus 43 ~n~g~~-G~~~~~~~~~~~----~~~~~~~pd~vvi~~G~ND~~~----~~~~~~~~~~~~l~~~i~~~~--~~~vi~~~ 111 (195)
T 1yzf_A 43 INAGMP-GDTTEDGLKRLN----KEVLIEKPDEVVIFFGANDASL----DRNITVATFRENLETMIHEIG--SEKVILIT 111 (195)
T ss_dssp EEEECT-TCCHHHHHHHHH----HHTGGGCCSEEEEECCTTTTCT----TSCCCHHHHHHHHHHHHHHHC--GGGEEEEC
T ss_pred EeCCCC-CCCHHHHHHHHH----HhhhhcCCCEEEEEeeccccCc----cCCCCHHHHHHHHHHHHHHhc--CCEEEEEc
Confidence 454443 333334444343 3345689999999999754431 22456665554 344444 55666653
No 22
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=51.85 E-value=14 Score=31.89 Aligned_cols=45 Identities=24% Similarity=0.414 Sum_probs=29.3
Q ss_pred hHhhhcCCCEEEEecCCC-CCCCCCCCccccCHH----HHHHHHHHHHhcCCCEEEE
Q 011109 255 KVMEVFRPGAVVLQCGAD-SLSGDRLGCFNLSIK----GHAECVKFMRSFNVPLLLL 306 (493)
Q Consensus 255 pv~~~f~PdlIVvqaG~D-sl~gDpLG~~nLT~~----g~~~~v~~l~~~~~pllvl 306 (493)
..+..++||+|||+.|.. ... ..+.+ .+.++++.+++.+.+++++
T Consensus 60 ~~~~~~~pd~vvi~~G~ND~~~-------~~~~~~~~~~~~~~i~~~~~~~~~vvl~ 109 (185)
T 3hp4_A 60 ALLEQYEPTHVLIELGANDGLR-------GFPVKKMQTNLTALVKKSQAANAMTALM 109 (185)
T ss_dssp HHHHHHCCSEEEEECCHHHHHT-------TCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhhcCCCEEEEEeecccCCC-------CcCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 345568999999999963 222 23334 4445677777777777665
No 23
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=50.91 E-value=12 Score=33.74 Aligned_cols=56 Identities=20% Similarity=0.218 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhc--CCCEEEE
Q 011109 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLL 306 (493)
Q Consensus 243 ~~yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~~~--~~pllvl 306 (493)
..++..+.. .+..++||+|||+.|..=.. .....+.+.+..+++.+++. +.+++++
T Consensus 69 ~~~~~~l~~----~l~~~~pd~vvi~~G~ND~~----~~~~~~~~~l~~li~~i~~~~p~~~ii~~ 126 (215)
T 2vpt_A 69 PQIASNINN----WLNTHNPDVVFLWIGGNDLL----LNGNLNATGLSNLIDQIFTVKPNVTLFVA 126 (215)
T ss_dssp HHHHHHHHH----HHHHHCCSEEEEECCHHHHH----HHCCCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHH----HhhccCCCEEEEEccccccC----CCCChhHHHHHHHHHHHHHhCCCCEEEEE
Confidence 444444443 34468999999999964222 11234567888899988876 5556555
No 24
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=46.68 E-value=33 Score=33.53 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcC--CCEEEEeC
Q 011109 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFN--VPLLLLGG 308 (493)
Q Consensus 243 ~~yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~~~~--~pllvlgg 308 (493)
++...+|+.++. .+.+.+||+||+. | |. =.-....+......+.++++++. +|++++.|
T Consensus 44 ~~~~~~l~~lv~-~~~~~~~D~vlia-G-D~----l~d~~~~~~~~~~~~~~~l~~L~~~~pv~~i~G 104 (336)
T 2q8u_A 44 EELKKALDKVVE-EAEKREVDLILLT-G-DL----LHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPG 104 (336)
T ss_dssp HHHHHHHHHHHH-HHHHHTCSEEEEE-S-CS----BSCSSCCCHHHHHHHHHHHHHHHHHSCEEECCC
T ss_pred HHHHHHHHHHHH-HHHHhCCCEEEEC-C-cc----ccCCCCCCHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 456678887775 4567799988775 3 30 22222234443334445554443 78777654
No 25
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=46.46 E-value=35 Score=34.33 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhc---CCCEEEEeC
Q 011109 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF---NVPLLLLGG 308 (493)
Q Consensus 243 ~~yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~~~---~~pllvlgg 308 (493)
.+...+|+.++.. +.+-+||+||++ ||=.....-+...+..+.+.++.+ ++|++++.|
T Consensus 43 ~~~~~~l~~~v~~-~~~~~~D~Vlia-------GDl~d~~~p~~~~~~~~~~~l~~L~~~~~pv~~v~G 103 (386)
T 3av0_A 43 KDIYDSFKLCIKK-ILEIKPDVVLHS-------GDLFNDLRPPVKALRIAMQAFKKLHENNIKVYIVAG 103 (386)
T ss_dssp HHHHHHHHHHHHH-HHTTCCSEEEEC-------SCSBSSSSCCHHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred HHHHHHHHHHHHH-HHHcCCCEEEEC-------CCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence 3456778777754 456799998874 443222223444444555555444 788877754
No 26
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=46.21 E-value=42 Score=32.87 Aligned_cols=64 Identities=17% Similarity=0.355 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 011109 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTI 313 (493)
Q Consensus 243 ~~yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~~~~~pllvlggGGY~~ 313 (493)
..+...|++.+ |-+.+|+=..|||-.|-.++.... ......+-+..+++.+.++++|.|||-..
T Consensus 8 ~~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vVlVhGgG~~i 71 (300)
T 2buf_A 8 AQVAKVLSEAL-PYIRRFVGKTLVIKYGGNAMESEE------LKAGFARDVVLMKAVGINPVVVHGGGPQI 71 (300)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCEEEEEECCTTTTSSH------HHHHHHHHHHHHHHTTCEEEEEECCCHHH
T ss_pred HHHHHHHHHHh-HHHHHhcCCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCeEEEEECCcHHH
Confidence 36778888865 678889999999999988886531 12234444455666788888888887643
No 27
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=45.75 E-value=20 Score=31.71 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=31.1
Q ss_pred hHhhhcCC-CEEEEecCCCCCCCCCCCccccCHHH----HHHHHHHHHhcC---------CCEEEEe
Q 011109 255 KVMEVFRP-GAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFN---------VPLLLLG 307 (493)
Q Consensus 255 pv~~~f~P-dlIVvqaG~Dsl~gDpLG~~nLT~~g----~~~~v~~l~~~~---------~pllvlg 307 (493)
..+..++| |+|||+.|..=. ...+..+.+. +.++++.+++.+ .+++++.
T Consensus 76 ~~l~~~~p~d~vvi~~G~ND~----~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~P~~~iil~~ 138 (216)
T 2q0q_A 76 SCLATHLPLDLVIIMLGTNDT----KAYFRRTPLDIALGMSVLVTQVLTSAGGVGTTYPAPKVLVVS 138 (216)
T ss_dssp HHHHHHCSCSEEEEECCTGGG----SGGGCCCHHHHHHHHHHHHHHHHTCTTTTTBCCCCCEEEEEE
T ss_pred HHHHhCCCCCEEEEEecCccc----chhcCCCHHHHHHHHHHHHHHHHHhcccccccCCCCeEEEEe
Confidence 34556788 999999997432 2223445554 445667777766 6676663
No 28
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=45.41 E-value=6.4 Score=34.71 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=29.5
Q ss_pred hHhhhcCCCEEEEecCCC-CCCCCCCC---ccccCHHHHH----HHHHHHHhcCCCEEEE
Q 011109 255 KVMEVFRPGAVVLQCGAD-SLSGDRLG---CFNLSIKGHA----ECVKFMRSFNVPLLLL 306 (493)
Q Consensus 255 pv~~~f~PdlIVvqaG~D-sl~gDpLG---~~nLT~~g~~----~~v~~l~~~~~pllvl 306 (493)
..+...+||+|||+.|.. ...+.+.+ ....+.+.|. ++++.+++.+.+++++
T Consensus 77 ~~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vil~ 136 (216)
T 3rjt_A 77 DDVMALQPDYVSLMIGVNDVWRQFDMPLVVERHVGIDEYRDTLRHLVATTKPRVREMFLL 136 (216)
T ss_dssp HHTGGGCCSEEEEECCHHHHHHHHHSTTCGGGCCCHHHHHHHHHHHHHHHGGGSSEEEEE
T ss_pred hHHhhcCCCEEEEEeeccccchhhccccccccCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 344568999999999963 22111000 0133445444 4566666667777766
No 29
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=45.32 E-value=5.5 Score=33.43 Aligned_cols=56 Identities=14% Similarity=0.379 Sum_probs=45.9
Q ss_pred HHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHH----HHHHHHHHHhcCCCEEEE
Q 011109 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLLLL 306 (493)
Q Consensus 251 ~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g----~~~~v~~l~~~~~pllvl 306 (493)
++|..++++|+-++=|++++.|...+.++|.|-+.+.| ..+.+++|++.++.+=++
T Consensus 36 PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 95 (106)
T 3dhx_A 36 PLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEVL 95 (106)
T ss_dssp CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCCEEEEe
Confidence 57888899999999999999999999999998776544 556778888887755444
No 30
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=44.64 E-value=59 Score=31.73 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHH---HHHHHHhcCCCEEEEeC
Q 011109 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAE---CVKFMRSFNVPLLLLGG 308 (493)
Q Consensus 243 ~~yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~---~v~~l~~~~~pllvlgg 308 (493)
+++..+|+.++. .+.+.+||+||+. ||=....+-+.+.+.. .++.++..++|++++.|
T Consensus 23 ~~~~~~~~~~~~-~~~~~~~D~vl~~-------GDl~d~~~~~~~~~~~~~~~l~~l~~~~~~v~~v~G 83 (333)
T 1ii7_A 23 EEFAEAFKNALE-IAVQENVDFILIA-------GDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEG 83 (333)
T ss_dssp HHHHHHHHHHHH-HHHHTTCSEEEEE-------SCSBSSSSCCHHHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred HHHHHHHHHHHH-HHHhcCCCEEEEC-------CCcCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEeCC
Confidence 356677877775 5667899988875 3432222223333443 44444555789887754
No 31
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=43.43 E-value=30 Score=31.55 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=30.0
Q ss_pred hHhhhcCC-CEEEEecCCCCCCCCCCCccccCHHHHH----HHHHHHHhc-------CCCEEEE
Q 011109 255 KVMEVFRP-GAVVLQCGADSLSGDRLGCFNLSIKGHA----ECVKFMRSF-------NVPLLLL 306 (493)
Q Consensus 255 pv~~~f~P-dlIVvqaG~Dsl~gDpLG~~nLT~~g~~----~~v~~l~~~-------~~pllvl 306 (493)
..+..++| |+|||..|.. |-......+.+.|. ++++.+++. +.+++++
T Consensus 94 ~~l~~~~p~d~VvI~~GtN----D~~~~~~~~~~~~~~~l~~li~~ir~~~~~~~~p~~~iil~ 153 (232)
T 3dci_A 94 VALSCHMPLDLVIIMLGTN----DIKPVHGGRAEAAVSGMRRLAQIVETFIYKPREAVPKLLIV 153 (232)
T ss_dssp HHHHHHCSCSEEEEECCTT----TTSGGGTSSHHHHHHHHHHHHHHHHHCCCSSTTCCCEEEEE
T ss_pred HHHhhCCCCCEEEEEeccC----CCccccCCCHHHHHHHHHHHHHHHHHhcccccCCCCeEEEE
Confidence 45567899 9999999964 43333334555554 566667664 3455555
No 32
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=43.34 E-value=4.9 Score=33.22 Aligned_cols=56 Identities=18% Similarity=0.427 Sum_probs=46.1
Q ss_pred HHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHH----HHHHHHHHHhcCCCEEEE
Q 011109 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLLLL 306 (493)
Q Consensus 251 ~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g----~~~~v~~l~~~~~pllvl 306 (493)
++|..++++|+-++=|++++.|...+.++|.|-+...| ..+.+.+|++.++.+=++
T Consensus 38 pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (101)
T 2qrr_A 38 PLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEVL 97 (101)
T ss_dssp CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEEEEe
Confidence 67888899999999999999999999999998886543 456778888887765444
No 33
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=41.67 E-value=25 Score=35.51 Aligned_cols=69 Identities=10% Similarity=0.134 Sum_probs=38.6
Q ss_pred EeecCCCCCCChHHHHHHHHHHHHhHhhhcCC-CEEEEecCCCCCCCCCCCccccCHHH----HHHHHHHHHhcCCCEEE
Q 011109 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRP-GAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLLL 305 (493)
Q Consensus 231 ~vNVPL~~G~~D~~yl~~f~~iv~pv~~~f~P-dlIVvqaG~Dsl~gDpLG~~nLT~~g----~~~~v~~l~~~~~pllv 305 (493)
.+|.-... .+-..++.- ..+.+++..++| |+|||+.|..=... ....+.+. +.++++.+++.+.++++
T Consensus 202 v~N~GisG-~tt~~~l~~--~rl~~~l~~~~p~d~VvI~~G~ND~~~----~~~~~~~~~~~~l~~ii~~lr~~~a~vil 274 (375)
T 2o14_A 202 VRNMASGG-QIARGFRND--GQLEAILKYIKPGDYFMLQLGINDTNP----KHKESEAEFKEVMRDMIRQVKAKGADVIL 274 (375)
T ss_dssp EEECCCTT-CCHHHHHHS--SHHHHHHTTCCTTCEEEEECCTGGGCG----GGCCCHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred EEEeccCC-CcHhhhhhc--ccHHHHHHhCCCCCEEEEEEEccCCCc----cCCCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 56665543 222333320 123455677899 99999999743221 12234444 44566777776766665
Q ss_pred E
Q 011109 306 L 306 (493)
Q Consensus 306 l 306 (493)
+
T Consensus 275 v 275 (375)
T 2o14_A 275 S 275 (375)
T ss_dssp E
T ss_pred E
Confidence 5
No 34
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=41.32 E-value=25 Score=34.44 Aligned_cols=67 Identities=16% Similarity=0.341 Sum_probs=45.8
Q ss_pred CChHHHHHHHHHHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 011109 240 IDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTI 313 (493)
Q Consensus 240 ~~D~~yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~~~~~pllvlggGGY~~ 313 (493)
+....+...|++.+ |-+++|+-..|||-.|-.++... + ..+.+.+.+..+++.+.++++|-|||-..
T Consensus 4 ~~~~~~~~~~~~a~-pyi~~~~~k~iViKlGGs~l~~~-----~-~~~~~~~~i~~l~~~G~~vViVhGgG~~i 70 (299)
T 2ap9_A 4 LPTHIKAQVLAEAL-PWLKQLHGKVVVVKYGGNAMTDD-----T-LRRAFAADMAFLRNCGIHPVVVHGGGPQI 70 (299)
T ss_dssp SCHHHHHHHHHHHH-HHHHHHTTCEEEEEECTHHHHSH-----H-HHHHHHHHHHHHHTTTCEEEEEECCSHHH
T ss_pred CChhhHHHHHHHHH-HHHHHhCCCeEEEEECchhhCCc-----h-HHHHHHHHHHHHHHCCCcEEEEECCcHHH
Confidence 44577888898865 77899999999999997666432 0 12234444555566677888888887543
No 35
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=40.94 E-value=27 Score=31.74 Aligned_cols=42 Identities=14% Similarity=0.336 Sum_probs=27.6
Q ss_pred hhhcCCCEEEEecCCCCCCCCCCCccccCHHH----HHHHHHHHHhc--CCCEEEE
Q 011109 257 MEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSF--NVPLLLL 306 (493)
Q Consensus 257 ~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g----~~~~v~~l~~~--~~pllvl 306 (493)
+..++||+|||..|..=. | .+.+. +.++++.+++. +.+++++
T Consensus 90 l~~~~pd~vvi~~G~ND~-----~---~~~~~~~~~l~~~i~~l~~~~p~~~iil~ 137 (229)
T 1fxw_F 90 LENIKPKVIVVWVGTNNH-----E---NTAEEVAGGIEAIVQLINTRQPQAKIIVL 137 (229)
T ss_dssp TSSCCCSEEEEECCTTCT-----T---SCHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred cccCCCCEEEEEEecCCC-----C---CCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 456899999999997544 2 34444 44566666654 5566665
No 36
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=32.69 E-value=39 Score=34.50 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=32.4
Q ss_pred HhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhc--CCCEEEEe
Q 011109 254 GKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLLG 307 (493)
Q Consensus 254 ~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~~~--~~pllvlg 307 (493)
..++..++||+|||.+|..=...+ + ...--.+.+..+++.+++. +.||+++.
T Consensus 237 ~~~l~~~~pdlVvI~lGtND~~~~-~-~~~~~~~~l~~li~~ir~~~P~a~Illv~ 290 (385)
T 3skv_A 237 ARLIRDLPADLISLRVGTSNFMDG-D-GFVDFPANLVGFVQIIRERHPLTPIVLGS 290 (385)
T ss_dssp HHHHHHSCCSEEEEEESHHHHTTT-C-CTTTHHHHHHHHHHHHHTTCSSSCEEEEE
T ss_pred HHHHhccCCCEEEEEeeccCCCCC-C-CHHHHHHHHHHHHHHHHHHCCCCcEEEEc
Confidence 344566799999999997543322 0 1112234566778888775 56777764
No 37
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=31.69 E-value=24 Score=34.60 Aligned_cols=63 Identities=13% Similarity=0.278 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 011109 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYT 312 (493)
Q Consensus 243 ~~yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~~~~~pllvlggGGY~ 312 (493)
..+...|++.+ |-+++|+-..|||-.|--++... + ..+.+.+-+..+++.+.++++|.|||-.
T Consensus 18 ~~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~~-----~-~~~~~~~~i~~l~~~G~~vViVhGgG~~ 80 (298)
T 2rd5_A 18 DYRVEILSESL-PFIQKFRGKTIVVKYGGAAMTSP-----E-LKSSVVSDLVLLACVGLRPILVHGGGPD 80 (298)
T ss_dssp CHHHHHHHHTH-HHHHHTTTCEEEEEECTHHHHCH-----H-HHHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred HHHHHHHHHHH-HHHHHhcCCEEEEEECchhhCCh-----h-HHHHHHHHHHHHHHCCCCEEEEECCcHH
Confidence 46888898865 77899999999999996665431 0 1223344444556667788888888654
No 38
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=31.03 E-value=48 Score=32.08 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhHhhhcCCCEEEEecCCCCCC
Q 011109 245 YHYLFKPIIGKVMEVFRPGAVVLQCGADSLS 275 (493)
Q Consensus 245 yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~ 275 (493)
+...+...|..++++++|++||.-.|.|.|.
T Consensus 132 ~~~~l~~~l~~~ir~~~PdvV~t~~~~d~Hp 162 (273)
T 3dff_A 132 LVGEVADDIRSIIDEFDPTLVVTCAAIGEHP 162 (273)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEEECCTTCCH
T ss_pred hHHHHHHHHHHHHHHcCCCEEEECCCCCCCh
Confidence 4555556677899999999999987766553
No 39
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=30.04 E-value=1e+02 Score=28.26 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=22.8
Q ss_pred EeecCCCCCCChHHHHHHHHHHHHhHhhhcCC-CEEEEecCCCCC
Q 011109 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRP-GAVVLQCGADSL 274 (493)
Q Consensus 231 ~vNVPL~~G~~D~~yl~~f~~iv~pv~~~f~P-dlIVvqaG~Dsl 274 (493)
.+|..+... +-..++.- ..+..++...+| |+|||+.|..=.
T Consensus 35 v~N~gi~G~-tt~~~~~~--~r~~~~l~~~~~~d~ViI~~G~ND~ 76 (233)
T 1k7c_A 35 VVNDAVAGR-SARSYTRE--GRFENIADVVTAGDYVIVEFGHNDG 76 (233)
T ss_dssp EEECCCTTC-CHHHHHHT--THHHHHHHHCCTTCEEEECCCTTSC
T ss_pred EEecccCCc-cHHHHHHc--ccHHHHHhhCCCCCEEEEEccCCCC
Confidence 346555433 33344421 123445555666 999999998533
No 40
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=29.94 E-value=67 Score=34.13 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=36.9
Q ss_pred HHHHHHHhHhhhcCCCEEEEecC-CCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCCc
Q 011109 248 LFKPIIGKVMEVFRPGAVVLQCG-ADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIR 314 (493)
Q Consensus 248 ~f~~iv~pv~~~f~PdlIVvqaG-~Dsl~gDpLG~~nLT~~g~~~~v~~l~~~~~pllvlggGGY~~~ 314 (493)
-++..|..+.+.|+|++|+|... .-...||.+. .+++.++. +.||+.+--.||.-.
T Consensus 72 kL~~aI~~~~~~~~P~~I~V~tTC~~elIGdDi~----------~v~~~~~~-~~pVi~v~tpgf~g~ 128 (525)
T 3aek_B 72 LLKDALAAAHARYKPQAMAVALTCTAELLQDDPN----------GISRALNL-PVPVVPLELPSYSRK 128 (525)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEECTTGGGSCCCHH----------HHHHHHTC-SSCEEECCCCTTTCC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcHHHHhcccHH----------HHHHHhcC-CCCEEEEECCCcCCc
Confidence 34455667778899997776654 6677777433 23344433 788888887888764
No 41
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=29.69 E-value=41 Score=32.41 Aligned_cols=63 Identities=14% Similarity=0.310 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 011109 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTI 313 (493)
Q Consensus 244 ~yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~~~~~pllvlggGGY~~ 313 (493)
.+...|++.+ |-+++|+-..||+-.|--++... + ..+.+.+-+..+++.+.++++|.|||-..
T Consensus 4 ~~~~~~~~~~-pyi~~~~~~~iViKlGGs~l~~~-----~-~~~~~~~~i~~l~~~G~~vVlVhGgG~~i 66 (282)
T 2bty_A 4 DTVNVLLEAL-PYIKEFYGKTFVIKFGGSAMKQE-----N-AKKAFIQDIILLKYTGIKPIIVHGGGPAI 66 (282)
T ss_dssp HHHHHHHHHH-HHHHHHTTCEEEEEECSHHHHSH-----H-HHHHHHHHHHHHHHTTCEEEEEECCSHHH
T ss_pred HHHHHHHHHH-HHHHHhcCCeEEEEECchhhCCh-----h-HHHHHHHHHHHHHHCCCcEEEEECCcHHH
Confidence 5667787765 77899998999999996665431 0 12233344445555677888888887543
No 42
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=29.57 E-value=56 Score=31.54 Aligned_cols=31 Identities=10% Similarity=0.041 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhHhhhcCCCEEEEecCCCCCC
Q 011109 245 YHYLFKPIIGKVMEVFRPGAVVLQCGADSLS 275 (493)
Q Consensus 245 yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~ 275 (493)
+...+...|..++++++|++|+.-.|.|.|.
T Consensus 129 ~~~~~~~~l~~~ir~~~PdvV~t~~~~d~Hp 159 (270)
T 3dfi_A 129 LVAAIREDIESMIAECDPTLVLTCVAIGKHP 159 (270)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEEECCTTCCH
T ss_pred hHHHHHHHHHHHHHHcCCCEEEeCCCCCCCh
Confidence 4445556677899999999999987766553
No 43
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=27.47 E-value=37 Score=30.60 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=30.4
Q ss_pred cCCCEEEEecCC-CCCCCCCCCcccc-CH----HHHHHHHHHHHhc--CCCEEEE
Q 011109 260 FRPGAVVLQCGA-DSLSGDRLGCFNL-SI----KGHAECVKFMRSF--NVPLLLL 306 (493)
Q Consensus 260 f~PdlIVvqaG~-Dsl~gDpLG~~nL-T~----~g~~~~v~~l~~~--~~pllvl 306 (493)
.+||+|||..|. |...+-+++.+.- +. ..+.++++.+++. +.+++++
T Consensus 81 ~~pd~Vii~~G~ND~~~~~~~~~~~~~~~~~f~~~l~~li~~l~~~~P~~~iil~ 135 (232)
T 3dc7_A 81 EDADFIAVFGGVNDYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFI 135 (232)
T ss_dssp TTCSEEEEECCHHHHHTTCCCCCTTCCSTTSHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCCCEEEEEEeccccccCcCCccccccchHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 499999999997 4444445554321 11 2556677777766 6777775
No 44
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=27.19 E-value=97 Score=31.07 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhHhhhcCCCEEEEecCCCCCCCCCC-CccccCHHHHHHHH---HHHHhcCCCEEEEeC
Q 011109 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRL-GCFNLSIKGHAECV---KFMRSFNVPLLLLGG 308 (493)
Q Consensus 243 ~~yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpL-G~~nLT~~g~~~~v---~~l~~~~~pllvlgg 308 (493)
+++..+|+.++. ++.+.+||+||+. ||=. -.-+.+...+..+. +.+... +|++++.|
T Consensus 26 ~~~~~~l~~l~~-~~~~~~~D~vlia-------GDl~hd~~~~~~~~~~~~~~~l~~l~~~-~~v~~i~G 86 (379)
T 3tho_B 26 EELKKALDKVVE-EAEKREVDLILLT-------GDLLHSRNNPSVVALHDLLDYLKRMMRT-APVVVLPG 86 (379)
T ss_dssp HHHHHHHHHHHH-HHHHHTCSEEEEC-------SCCBSCSSSCCHHHHHHHHHHHHHHHHH-SCEEECCC
T ss_pred HHHHHHHHHHHH-HHHhcCCCEEEEC-------CCccccCCCCCHHHHHHHHHHHHHHHhC-CCEEEEcC
Confidence 457777877664 5678899999984 4533 22334444444444 444444 88877654
No 45
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=27.13 E-value=1.1e+02 Score=27.97 Aligned_cols=47 Identities=9% Similarity=0.231 Sum_probs=30.6
Q ss_pred hHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCC---CEEEEeCCCCC
Q 011109 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNV---PLLLLGGGGYT 312 (493)
Q Consensus 255 pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~~~~~---pllvlggGGY~ 312 (493)
..+++++||+|.+|+-.. -+.....+.++.+++.+. ..+++||.+.+
T Consensus 133 ~~~~~~~~d~v~lS~~~~-----------~~~~~~~~~i~~l~~~~~~~~~~v~vGG~~~~ 182 (210)
T 1y80_A 133 EAVKKYQPDIVGMSALLT-----------TTMMNMKSTIDALIAAGLRDRVKVIVGGAPLS 182 (210)
T ss_dssp HHHHHHCCSEEEEECCSG-----------GGTHHHHHHHHHHHHTTCGGGCEEEEESTTCC
T ss_pred HHHHHcCCCEEEEecccc-----------ccHHHHHHHHHHHHhcCCCCCCeEEEECCCCC
Confidence 456778999999997422 134556778888887643 23455555544
No 46
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=26.59 E-value=1.2e+02 Score=31.53 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHH
Q 011109 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMR 297 (493)
Q Consensus 243 ~~yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~ 297 (493)
.+....|+.++. .+.+.+||+||+. ||=.-...-+.+....+.+.++
T Consensus 54 ~d~~~~l~~ll~-~~~~~~~D~Vlia-------GDlfd~~~~~~~~~~~~~~~L~ 100 (431)
T 3t1i_A 54 NDTFVTLDEILR-LAQENEVDFILLG-------GDLFHENKPSRKTLHTCLELLR 100 (431)
T ss_dssp THHHHHHHHHHH-HHHHTTCSEEEEC-------SCCBSSSSCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH-HHhhcCCCEEEEc-------CccccCCCCCHHHHHHHHHHHH
Confidence 355667777665 4567899999983 3433333445566666666655
No 47
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=26.51 E-value=1.4e+02 Score=27.29 Aligned_cols=55 Identities=24% Similarity=0.328 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhHhhh-cCCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeC
Q 011109 245 YHYLFKPIIGKVMEV-FRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGG 308 (493)
Q Consensus 245 yl~~f~~iv~pv~~~-f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~~~~~pllvlgg 308 (493)
....|+.++..+.+. -+||+||+. | |.... -+...|..+.+.++.++.|++++.|
T Consensus 24 ~~~~l~~~l~~~~~~~~~~d~vi~~-G-Dl~~~-------~~~~~~~~~~~~l~~l~~p~~~v~G 79 (274)
T 3d03_A 24 VNAANADVVSQLNALRERPDAVVVS-G-DIVNC-------GRPEEYQVARQILGSLNYPLYLIPG 79 (274)
T ss_dssp HHHHHHHHHHHHHTCSSCCSEEEEE-S-CCBSS-------CCHHHHHHHHHHHTTCSSCEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEC-C-CCCCC-------CCHHHHHHHHHHHHhcCCCEEEECC
Confidence 455666666655443 268987764 3 32211 1234566778888888889887765
No 48
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=25.84 E-value=66 Score=28.66 Aligned_cols=35 Identities=29% Similarity=0.465 Sum_probs=21.6
Q ss_pred EeecCCCCCCChHHHHHHHHHHHHhHhhhcCCCEEEEec
Q 011109 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQC 269 (493)
Q Consensus 231 ~vNVPL~~G~~D~~yl~~f~~iv~pv~~~f~PdlIVvqa 269 (493)
++|| .|.+......-.+ .|..++++.+||+|.+|=
T Consensus 18 s~Ni---~g~~~~~~~~r~~-~i~~~i~~~~pDIi~LQE 52 (256)
T 4fva_A 18 SWNI---DGLDGRSLLTRMK-AVAHIVKNVNPDILFLQE 52 (256)
T ss_dssp EEEC---CTTCCTTHHHHHH-HHHHHHHHHCCSEEEEEE
T ss_pred EEec---CCCCCcCHHHHHH-HHHHHHHHcCCCEEEEEe
Confidence 4555 2443333333333 355678889999999995
No 49
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=25.48 E-value=44 Score=29.78 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=26.9
Q ss_pred hcCCCEEEEecCCCCCCCCCCCccccCHHHH----HHHHHHHHhcCCCEEEEe
Q 011109 259 VFRPGAVVLQCGADSLSGDRLGCFNLSIKGH----AECVKFMRSFNVPLLLLG 307 (493)
Q Consensus 259 ~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~----~~~v~~l~~~~~pllvlg 307 (493)
..+||+|||+.|..=... ..+....+.+.| .++++.+++. .+++++.
T Consensus 86 ~~~pd~vvi~~G~ND~~~-~~~~~~~~~~~~~~~l~~li~~l~~~-~~iil~~ 136 (218)
T 1vjg_A 86 KEYNSLVVFSFGLNDTTL-ENGKPRVSIAETIKNTREILTQAKKL-YPVLMIS 136 (218)
T ss_dssp TTSEEEEEEECCHHHHCE-ETTEESSCHHHHHHHHHHHHHHHHHH-SCEEEEC
T ss_pred cCCCCEEEEEecCCcchh-hcccccCCHHHHHHHHHHHHHHHHHh-CcEEEEC
Confidence 369999999999732210 000113444444 4566666666 7777663
No 50
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=25.12 E-value=34 Score=31.17 Aligned_cols=19 Identities=37% Similarity=0.438 Sum_probs=15.3
Q ss_pred hc-CCcEEEEEccccCChhh
Q 011109 173 KQ-HERVLYVDIDIHHGDGV 191 (493)
Q Consensus 173 k~-~~RVl~VDiDvHHGDGt 191 (493)
+. .+|||+||.|..+|+=+
T Consensus 31 ~~~g~~VlliD~D~~~~~l~ 50 (245)
T 3ea0_A 31 QEPDIHVLAVDISLPFGDLD 50 (245)
T ss_dssp TSTTCCEEEEECCTTTCCGG
T ss_pred hCcCCCEEEEECCCCCCCHH
Confidence 44 78999999999877644
No 51
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=24.96 E-value=2.3e+02 Score=26.83 Aligned_cols=65 Identities=12% Similarity=0.207 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhHhhhcC--CCEEEEecCCCCCCCCCCCccccC--HHHHHHHHHHHHhcCC-CEEEEeCCCCCC
Q 011109 244 SYHYLFKPIIGKVMEVFR--PGAVVLQCGADSLSGDRLGCFNLS--IKGHAECVKFMRSFNV-PLLLLGGGGYTI 313 (493)
Q Consensus 244 ~yl~~f~~iv~pv~~~f~--PdlIVvqaG~Dsl~gDpLG~~nLT--~~g~~~~v~~l~~~~~-pllvlggGGY~~ 313 (493)
.+...+...+..++++|+ |+.|++. +...|.+.+.-+ .+.|.++++.+|+.+. .+|++++.+|+.
T Consensus 94 ~~~~~~~~~w~~ia~~y~~~~~~v~~e-----l~NEP~~~~~~~~~~~~~~~~~~~IR~~d~~~~i~v~~~~~~~ 163 (294)
T 2whl_A 94 SDLNRAVDYWIEMKDALIGKEDTVIIN-----IANEWYGSWDGSAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQ 163 (294)
T ss_dssp HHHHHHHHHHHHTHHHHTTCTTTEEEE-----CCTTCCCSSCHHHHHHHHHHHHHHHHHTTCCSCEEEECBTTTT
T ss_pred hhHHHHHHHHHHHHHHHcCCCCeEEEE-----ecCCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCCCC
Confidence 445556666667778885 4445554 345676643211 3456678888888743 456666666654
No 52
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=24.63 E-value=55 Score=29.59 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=14.4
Q ss_pred hcCCcEEEEEccccCCh
Q 011109 173 KQHERVLYVDIDIHHGD 189 (493)
Q Consensus 173 k~~~RVl~VDiDvHHGD 189 (493)
+..+||++||.|..+|+
T Consensus 29 ~~g~~VlliD~D~~~~~ 45 (237)
T 1g3q_A 29 DRGRKVLAVDGDLTMAN 45 (237)
T ss_dssp HTTCCEEEEECCTTSCC
T ss_pred hcCCeEEEEeCCCCCCC
Confidence 45689999999998776
No 53
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=24.21 E-value=2.2e+02 Score=28.41 Aligned_cols=65 Identities=11% Similarity=0.171 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhHhhhcC--CCEEEEecCCCCCCCCCCCccccC--HHHHHHHHHHHHhcCC-CEEEEeCCCCCC
Q 011109 244 SYHYLFKPIIGKVMEVFR--PGAVVLQCGADSLSGDRLGCFNLS--IKGHAECVKFMRSFNV-PLLLLGGGGYTI 313 (493)
Q Consensus 244 ~yl~~f~~iv~pv~~~f~--PdlIVvqaG~Dsl~gDpLG~~nLT--~~g~~~~v~~l~~~~~-pllvlggGGY~~ 313 (493)
.+...+...+..++++|+ |+.|++..+ ..|.+.+.-+ .+.+.++++.+|+.+. .+|++++-+|+-
T Consensus 117 ~~~~~~~~~w~~iA~ryk~~~~~Vi~el~-----NEP~~~~~~~~w~~~~~~~i~~IR~~dp~~~Iiv~g~~w~~ 186 (345)
T 3jug_A 117 SDLDRAVDYWIEMKDALIGKEDTVIINIA-----NEWYGSWDGAAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQ 186 (345)
T ss_dssp HHHHHHHHHHHHTHHHHTTCTTTEEEECC-----TTCCCSSCHHHHHHHHHHHHHHHHHTTCCSCEEEECBTTTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEEec-----CCCCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEEeCCCccc
Confidence 355666666667777774 456666643 6676633211 2344567788888754 467777777775
No 54
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=23.77 E-value=1.2e+02 Score=28.08 Aligned_cols=56 Identities=18% Similarity=0.106 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhHhhhcCCCEEEEecCCCCCCCCCCCccc----cCHHHHHHHHHHHHhcCCCEEEEeC
Q 011109 245 YHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFN----LSIKGHAECVKFMRSFNVPLLLLGG 308 (493)
Q Consensus 245 yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~n----LT~~g~~~~v~~l~~~~~pllvlgg 308 (493)
.+..++.+|..+ .+-+||+||+. ||=..... -+.+.|..+.+.++.+++|++++.|
T Consensus 36 ~~~~l~~~~~~~-~~~~~d~vi~~-------GD~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~v~G 95 (322)
T 2nxf_A 36 SADLLRDAVLQW-RRERVQCVVQL-------GDIIDGHNRRRDASDRALDTVMAELDACSVDVHHVWG 95 (322)
T ss_dssp HHHHHHHHHHHH-HHTTCSEEEEC-------SCCBCTHHHHTTCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHHH-HhcCCCEEEEC-------CCccCCCCCcchHHHHHHHHHHHHHHhcCCcEEEecC
Confidence 455666666543 34789998765 45322211 1245667788888888889887764
No 55
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=23.48 E-value=1.7e+02 Score=29.44 Aligned_cols=62 Identities=23% Similarity=0.396 Sum_probs=34.5
Q ss_pred cEeecCCCCCCChHHHHHHHHHHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011109 230 YSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGG 309 (493)
Q Consensus 230 ~~vNVPL~~G~~D~~yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~~~~~pllvlggG 309 (493)
|.+|++ .+.-.+..-.++. -+.+++++++||+|++. ||+...|- ....+..++|++ ..++
T Consensus 66 ~~l~~~--~~~~~~~~~~~~~-~l~~~l~~~kPD~Vlv~-------gd~~~~~a---------alaA~~~~IPv~-h~ea 125 (385)
T 4hwg_A 66 YFLEVA--ADNTAKSIGLVIE-KVDEVLEKEKPDAVLFY-------GDTNSCLS---------AIAAKRRKIPIF-HMEA 125 (385)
T ss_dssp EECCCC--CCCSHHHHHHHHH-HHHHHHHHHCCSEEEEE-------SCSGGGGG---------HHHHHHTTCCEE-EESC
T ss_pred eecCCC--CCCHHHHHHHHHH-HHHHHHHhcCCcEEEEE-------CCchHHHH---------HHHHHHhCCCEE-EEeC
Confidence 455542 2322333334444 35678899999999997 34322221 112345689975 4466
Q ss_pred CC
Q 011109 310 GY 311 (493)
Q Consensus 310 GY 311 (493)
|.
T Consensus 126 gl 127 (385)
T 4hwg_A 126 GN 127 (385)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 56
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=23.26 E-value=81 Score=27.36 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=14.0
Q ss_pred HHhHhhhcCCCEEEEec
Q 011109 253 IGKVMEVFRPGAVVLQC 269 (493)
Q Consensus 253 v~pv~~~f~PdlIVvqa 269 (493)
|..++++.+||+|.+|=
T Consensus 26 i~~~i~~~~pDIi~LQE 42 (250)
T 4f1h_A 26 LCSYLALYTPDVVFLQE 42 (250)
T ss_dssp HHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHcCCCEEEEEe
Confidence 45677889999999994
No 57
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A*
Probab=22.87 E-value=50 Score=32.42 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=29.3
Q ss_pred hhcCCCEEEEecCC-CCCCCCCCCccccCHHHHHHHHHHHHhc--CCCEEEEe
Q 011109 258 EVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLLG 307 (493)
Q Consensus 258 ~~f~PdlIVvqaG~-Dsl~gDpLG~~nLT~~g~~~~v~~l~~~--~~pllvlg 307 (493)
..++||+|||..|. |...+.+. ..--.+.|..+++.+++. +.+|+++.
T Consensus 210 ~~~~PdlVvI~lGtND~~~~~~~--~~~~~~~l~~li~~ir~~~p~a~Iil~~ 260 (341)
T 2wao_A 210 SKYVPQVVVINLGTNDFSTSFAD--KTKFVTAYKNLISEVRRNYPDAHIFCCV 260 (341)
T ss_dssp GGCCCSEEEEECCHHHHSSSCCC--HHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cCCCCCEEEEeCccccCCCCCCC--HHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 36899999999997 44333210 011224566777777765 45666664
No 58
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=22.63 E-value=63 Score=29.57 Aligned_cols=18 Identities=11% Similarity=0.287 Sum_probs=14.8
Q ss_pred HhcCCcEEEEEccccCCh
Q 011109 172 LKQHERVLYVDIDIHHGD 189 (493)
Q Consensus 172 lk~~~RVl~VDiDvHHGD 189 (493)
.+..+||++||.|..+|+
T Consensus 28 a~~g~~VlliD~D~~~~~ 45 (260)
T 3q9l_A 28 AQKGKKTVVIDFAIGLRN 45 (260)
T ss_dssp HHTTCCEEEEECCCSSCC
T ss_pred HhCCCcEEEEECCCCCCC
Confidence 345689999999998776
No 59
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=21.81 E-value=2.4e+02 Score=25.63 Aligned_cols=57 Identities=11% Similarity=0.007 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccC-HHHHHHHHHHHHhcCCCEE
Q 011109 242 DESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLS-IKGHAECVKFMRSFNVPLL 304 (493)
Q Consensus 242 D~~yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT-~~g~~~~v~~l~~~~~pll 304 (493)
++..+..++..+ .++.+.....|++..|.+.. -.+... .+.+.++.+..++.++++.
T Consensus 80 ~~~~~~~~~~~i-~~a~~lG~~~v~~~~g~~~~-----~~~~~~~~~~l~~l~~~a~~~gv~l~ 137 (272)
T 2q02_A 80 TEEVVKKTEGLL-RDAQGVGARALVLCPLNDGT-----IVPPEVTVEAIKRLSDLFARYDIQGL 137 (272)
T ss_dssp CHHHHHHHHHHH-HHHHHHTCSEEEECCCCSSB-----CCCHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHHH-HHHHHhCCCEEEEccCCCch-----hHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 345666676666 46788999999998886532 234444 6667777777777777544
No 60
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=21.74 E-value=42 Score=33.39 Aligned_cols=63 Identities=13% Similarity=0.278 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 011109 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYT 312 (493)
Q Consensus 243 ~~yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~~~~~pllvlggGGY~ 312 (493)
..+...|++.+ |-+.+|+-..|||-.|--++... + ..+.+.+-+..+++.+.++++|-|||-.
T Consensus 31 ~~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~~-----~-~~~~l~~~i~~l~~~G~~vVlVhGgG~~ 93 (321)
T 2v5h_A 31 ADRVRILSEAL-PYLQQFAGRTVVVKYGGAAMKQE-----E-LKEAVMRDIVFLACVGMRPVVVHGGGPE 93 (321)
T ss_dssp CCHHHHHHHTH-HHHHHTTTCEEEEEECTHHHHSH-----H-HHHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred hhHHHHHHHHH-HHHHHhCCCeEEEEECchhhCCc-----h-HHHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 36888888865 78899999999999996665431 0 1223344444556668888888888654
No 61
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=21.70 E-value=88 Score=27.69 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=13.9
Q ss_pred HHhHhhhcCCCEEEEec
Q 011109 253 IGKVMEVFRPGAVVLQC 269 (493)
Q Consensus 253 v~pv~~~f~PdlIVvqa 269 (493)
|..++++.+||+|.+|=
T Consensus 32 i~~~i~~~~pDIi~LQE 48 (256)
T 4gz1_A 32 VCSCLALYSPDVVFLQE 48 (256)
T ss_dssp HHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHcCCCEEEEEc
Confidence 44677889999999993
No 62
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=21.48 E-value=1.9e+02 Score=29.96 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHh
Q 011109 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS 298 (493)
Q Consensus 244 ~yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~~ 298 (493)
+...+|+.++.- +.+.+||+||+. ||=.-.-.-+.+....+.+.|++
T Consensus 36 d~~~~l~~lv~~-~~~~~~D~Vlia-------GDLfd~~~p~~~~~~~~~~~lr~ 82 (417)
T 4fbw_A 36 DSFVSFNEILEI-ARERDVDMILLG-------GDIFHDNKPSRKALYQALRSLRL 82 (417)
T ss_dssp HHHHHHHHHHHH-HHHTTCSEEEEC-------SCCBSSSSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-HHhcCCCEEEEc-------CccccCCCCCHHHHHHHHHHHHH
Confidence 456677777754 556899999985 56544455566666666666554
No 63
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=21.26 E-value=71 Score=29.49 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=14.3
Q ss_pred hcCCcEEEEEccccCCh
Q 011109 173 KQHERVLYVDIDIHHGD 189 (493)
Q Consensus 173 k~~~RVl~VDiDvHHGD 189 (493)
+..+||++||.|...|+
T Consensus 29 ~~g~~VlliD~D~~~~~ 45 (263)
T 1hyq_A 29 QLGHDVTIVDADITMAN 45 (263)
T ss_dssp HTTCCEEEEECCCSSSS
T ss_pred hCCCcEEEEECCCCCCC
Confidence 45689999999998776
No 64
>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A*
Probab=21.12 E-value=2.1e+02 Score=29.37 Aligned_cols=73 Identities=14% Similarity=0.071 Sum_probs=57.6
Q ss_pred CCChHHHHHHHHHHHHhHhhhcCCCEEEEecCCCCCCCCCCCccccCHH----HHHHHHHHHHhcCCCEEEEeCCCC
Q 011109 239 GIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIK----GHAECVKFMRSFNVPLLLLGGGGY 311 (493)
Q Consensus 239 G~~D~~yl~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLT~~----g~~~~v~~l~~~~~pllvlggGGY 311 (493)
+++.+.++...+.++..=+.++..+.|+|-.|-.....|.+|.|....+ |...+++.+++.+.++-+-.+-|.
T Consensus 25 ~~~e~~i~~~ad~~~~~gl~~~G~~~~~iDdgW~~~~~d~~G~~~~~~~kFP~Gl~~l~~~i~~~Glk~Giw~~~g~ 101 (417)
T 1szn_A 25 DIDESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGRVDGHIAPNATRFPDGIDGLAKKVHALGLKLGIYSTAGT 101 (417)
T ss_dssp CCCHHHHHHHHHHHHHTTHHHHTCCEEECCSSCBCTTCCBTTBCCBCTTTCTTHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CCCHHHHHHHHHHHHHcCchhhCCCEEEECCCccCCCCCCCCCEEECcccCCcCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 4677788888877766556788899999999998888888998877655 889999999999888655544443
No 65
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=20.92 E-value=1.7e+02 Score=30.76 Aligned_cols=55 Identities=20% Similarity=0.169 Sum_probs=38.0
Q ss_pred HHHHhHhhhcCCCEEEEecCC-CCCCCCCCCccccCHHHHHHHHHHHH-hcCCCEEEEeCCCCCCch
Q 011109 251 PIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTIRN 315 (493)
Q Consensus 251 ~iv~pv~~~f~PdlIVvqaG~-Dsl~gDpLG~~nLT~~g~~~~v~~l~-~~~~pllvlggGGY~~~~ 315 (493)
..|..+.+.|+|++|+|...+ -...||.+. + +++.++ ..++|++.+--.||.-..
T Consensus 78 ~~I~~~~~~~~P~~I~V~tTC~~e~IGdDi~-------~---v~~~~~~~~g~pVi~v~tpgf~g~~ 134 (511)
T 2xdq_B 78 DNIIRKDTEEHPDLIVLTPTCTSSILQEDLQ-------N---FVRRASLSTTADVLLADVNHYRVNE 134 (511)
T ss_dssp HHHHHHHHHHCCSEEEEECCHHHHTTCCCHH-------H---HHHHHHHHCSSEEEECCCCTTTCCH
T ss_pred HHHHHHHHhcCCCEEEEeCCcHHHHhccCHH-------H---HHHHhhhccCCCEEEeeCCCcccch
Confidence 344556778999999888765 666666432 2 334333 468999999999998643
No 66
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=20.61 E-value=1.2e+02 Score=28.80 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=35.1
Q ss_pred CCCEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHH---hcCCCEEEEeCCCCCC
Q 011109 261 RPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMR---SFNVPLLLLGGGGYTI 313 (493)
Q Consensus 261 ~PdlIVvqaG~Dsl~gDpLG~~nLT~~g~~~~v~~l~---~~~~pllvlggGGY~~ 313 (493)
++..||+-.|--++..+ +...++.+-...+++.+. +.+.++++|.|||-..
T Consensus 11 ~~~~iViKiGGs~l~~~--~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~GgG~~~ 64 (255)
T 2jjx_A 11 PYKRVLIKLSGGALADQ--TGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIF 64 (255)
T ss_dssp BCSEEEEEECGGGTSCS--SSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTC
T ss_pred cCCEEEEEECHHHhCCC--CCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECchHHH
Confidence 56789999999988764 445566666666666554 3466788887776543
No 67
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=20.23 E-value=1.5e+02 Score=30.44 Aligned_cols=69 Identities=7% Similarity=0.049 Sum_probs=44.1
Q ss_pred HHHHHHhHhhhcCCCEEEEecC-CCCCCCCCCCccccCHHHHHHHHHHHH-hcCCCEEEEeCCCCCCchhhHHHHHHHHH
Q 011109 249 FKPIIGKVMEVFRPGAVVLQCG-ADSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTIRNVARCWCYETGV 326 (493)
Q Consensus 249 f~~iv~pv~~~f~PdlIVvqaG-~Dsl~gDpLG~~nLT~~g~~~~v~~l~-~~~~pllvlggGGY~~~~var~w~~~t~~ 326 (493)
++..|..+.+.|+|++|+|... .-.+.||. ...+++.++ +.++|++.+--.||.-. ....|-.....
T Consensus 85 L~~~i~~~~~~~~P~~I~v~~TC~~~iIGdD----------i~~v~~~~~~~~~ipVi~v~~~Gf~~~-~~~G~~~a~~a 153 (460)
T 2xdq_A 85 LKRLCLEIKRDRNPSVIVWIGTCTTEIIKMD----------LEGLAPKLEAEIGIPIVVARANGLDYA-FTQGEDTVLAA 153 (460)
T ss_dssp HHHHHHHHHHHHCCSEEEEEECHHHHHTTCC----------HHHHHHHHHHHHSSCEEEEECCTTTCC-TTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCCHHHHHhhC----------HHHHHHHHhhccCCcEEEEecCCcccc-HHHHHHHHHHH
Confidence 3566778888999999877643 33344443 233444443 56899999999999863 44455444444
Q ss_pred Hc
Q 011109 327 AL 328 (493)
Q Consensus 327 ll 328 (493)
++
T Consensus 154 l~ 155 (460)
T 2xdq_A 154 MA 155 (460)
T ss_dssp HH
T ss_pred HH
Confidence 44
Done!