Query 011110
Match_columns 493
No_of_seqs 95 out of 97
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 21:01:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1go4_E MAD1 (mitotic arrest de 78.8 4.3 0.00015 35.0 6.3 84 148-233 11-94 (100)
2 2lw1_A ABC transporter ATP-bin 76.7 13 0.00045 30.4 8.5 68 23-90 14-84 (89)
3 3lay_A Zinc resistance-associa 69.6 30 0.001 32.1 10.0 77 23-103 66-146 (175)
4 2lw1_A ABC transporter ATP-bin 67.6 6 0.0002 32.4 4.4 34 60-93 13-46 (89)
5 3oja_B Anopheles plasmodium-re 67.5 11 0.00038 38.8 7.5 34 63-96 552-585 (597)
6 3na7_A HP0958; flagellar bioge 60.5 48 0.0016 31.5 9.9 109 37-174 7-115 (256)
7 3sja_C Golgi to ER traffic pro 56.7 26 0.0009 28.1 6.1 30 64-93 27-56 (65)
8 2jee_A YIIU; FTSZ, septum, coi 53.5 44 0.0015 27.8 7.2 66 29-94 8-73 (81)
9 3sjb_C Golgi to ER traffic pro 45.2 66 0.0023 27.4 7.2 31 65-95 45-75 (93)
10 3iv1_A Tumor susceptibility ge 45.1 56 0.0019 27.0 6.5 56 34-92 10-69 (78)
11 1lwu_B Fibrinogen beta chain; 38.9 24 0.00084 35.5 4.2 51 45-97 6-56 (323)
12 3mq9_A Bone marrow stromal ant 37.6 76 0.0026 31.9 7.6 33 62-95 437-469 (471)
13 3hnw_A Uncharacterized protein 36.5 57 0.002 29.0 5.8 58 31-95 79-136 (138)
14 2wuj_A Septum site-determining 35.4 19 0.00063 27.6 2.1 34 189-227 21-54 (57)
15 1kd8_B GABH BLL, GCN4 acid bas 35.1 48 0.0017 23.9 4.0 26 206-231 7-32 (36)
16 1lwu_C Fibrinogen gamma chain; 34.5 29 0.00098 35.1 3.9 27 68-94 25-51 (323)
17 1uo4_A General control protein 34.1 42 0.0014 24.0 3.5 26 206-231 7-32 (34)
18 1ic2_A Tropomyosin alpha chain 33.4 78 0.0027 25.4 5.6 57 42-98 7-70 (81)
19 3m48_A General control protein 32.9 46 0.0016 23.7 3.5 25 207-231 7-31 (33)
20 2wq1_A General control protein 32.9 53 0.0018 23.3 3.9 26 206-231 6-31 (33)
21 2dfs_A Myosin-5A; myosin-V, in 31.8 3.2E+02 0.011 31.5 12.3 21 207-227 1023-1043(1080)
22 3c3f_A Alpha/beta peptide with 31.7 57 0.0019 23.3 3.9 26 206-231 7-32 (34)
23 2r2v_A GCN4 leucine zipper; co 30.3 62 0.0021 23.1 3.9 25 206-230 7-31 (34)
24 3vlc_E Golgi to ER traffic pro 29.9 76 0.0026 27.1 5.1 29 65-93 52-80 (94)
25 2p4v_A Transcription elongatio 28.5 1.1E+02 0.0039 27.3 6.4 56 33-88 11-72 (158)
26 2oqq_A Transcription factor HY 28.4 75 0.0026 23.7 4.2 37 195-231 3-41 (42)
27 2lme_A Adhesin YADA; trimeric 28.3 24 0.00084 29.8 1.9 31 70-100 10-40 (105)
28 3oja_A Leucine-rich immune mol 27.4 1.3E+02 0.0045 30.3 7.4 58 36-96 412-469 (487)
29 2l5g_B Putative uncharacterize 26.7 62 0.0021 24.1 3.5 31 149-179 2-32 (42)
30 2oxj_A Hybrid alpha/beta pepti 26.2 90 0.0031 22.3 4.1 25 207-231 8-32 (34)
31 2l5g_B Putative uncharacterize 26.0 75 0.0026 23.6 3.8 22 70-91 17-38 (42)
32 3c3g_A Alpha/beta peptide with 25.3 87 0.003 22.2 3.9 26 206-231 6-31 (33)
33 1grj_A GREA protein; transcrip 25.2 1.6E+02 0.0056 26.2 6.8 56 33-88 11-72 (158)
34 1i84_S Smooth muscle myosin he 24.9 1.1E+02 0.0038 35.2 7.0 21 72-92 916-936 (1184)
35 1ses_A Seryl-tRNA synthetase; 24.6 2.8E+02 0.0095 28.4 9.3 65 28-96 29-98 (421)
36 1zme_C Proline utilization tra 24.5 56 0.0019 24.4 3.1 24 70-93 45-68 (70)
37 1gax_A Valrs, valyl-tRNA synth 24.1 1.4E+02 0.0046 33.7 7.3 51 43-93 809-859 (862)
38 2bni_A General control protein 24.0 74 0.0025 22.7 3.3 26 206-231 7-32 (34)
39 2k48_A Nucleoprotein; viral pr 22.5 2.4E+02 0.0081 24.6 6.9 25 156-180 35-59 (107)
40 1kd8_A GABH AIV, GCN4 acid bas 22.1 1.1E+02 0.0039 22.0 4.0 25 207-231 8-32 (36)
41 2xzr_A Immunoglobulin-binding 21.7 1.6E+02 0.0056 25.5 5.7 81 152-232 9-108 (114)
42 1gmj_A ATPase inhibitor; coile 21.6 2.8E+02 0.0095 23.2 7.0 27 24-50 21-49 (84)
43 2hqx_A P100 CO-activator tudor 21.4 20 0.00068 33.4 0.0 22 108-129 221-242 (246)
44 2v71_A Nuclear distribution pr 21.3 4.7E+02 0.016 24.6 9.3 53 39-94 61-113 (189)
45 2wps_A Trimeric autotransporte 21.2 74 0.0025 27.7 3.5 28 206-233 75-102 (107)
46 3twe_A Alpha4H; unknown functi 20.4 72 0.0025 21.4 2.5 16 79-94 4-19 (27)
47 3vkg_A Dynein heavy chain, cyt 20.2 9.2E+02 0.031 31.6 14.1 18 211-228 2088-2105(3245)
48 3okq_A BUD site selection prot 20.1 1.2E+02 0.004 27.7 4.7 29 208-236 55-83 (141)
49 1gu4_A CAAT/enhancer binding p 20.0 35 0.0012 28.0 1.2 53 121-173 8-67 (78)
No 1
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=78.78 E-value=4.3 Score=35.04 Aligned_cols=84 Identities=20% Similarity=0.087 Sum_probs=53.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCChHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHH
Q 011110 148 IETADTLLDKRDVIMKEMEDKKELFEKEKDKMASETDVETESGDALDAYMSGLSSQLVLDKTMQHQKELSTLQSELDRIL 227 (493)
Q Consensus 148 vETYESLl~Kl~el~kEl~e~~e~L~~ek~K~ak~~~~~~s~~DsLDAFMs~L~S~l~~DkveKLr~eL~eLkkE~qRL~ 227 (493)
-++|++|-.+++.|..|...+.+.+.....++...... ++-|....=.=.++...+..-....+..+..|+.|.++|+
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~--Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr 88 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQ--GDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLR 88 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC--SCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999988887666655433211 1223211100111222222233467889999999999999
Q ss_pred HHHHhc
Q 011110 228 YLLKFA 233 (493)
Q Consensus 228 kLLKIA 233 (493)
..|...
T Consensus 89 ~~v~~l 94 (100)
T 1go4_E 89 GLLRAM 94 (100)
T ss_dssp HHHTTC
T ss_pred HHHHHH
Confidence 888643
No 2
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=76.74 E-value=13 Score=30.39 Aligned_cols=68 Identities=24% Similarity=0.221 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc--ccC-CCchhHHHHHHHHHHHHHHHHHHHHhHHH
Q 011110 23 GQLTEKQEKTREKVIKRTQKIAHMKREIDLIRAKDI--SQG-GLTQGQQTQIARNEQRIAQIMEELENLEE 90 (493)
Q Consensus 23 g~ltekQqk~~eki~kr~~Ki~nmk~EidrIraKe~--~~~-GLtqGQqtqi~RNEqri~~L~eEle~LEE 90 (493)
.+||=+.++.++.|..+|.++..-..+|+...+--. +.+ .-.+--..+++..++.+..+++.=+.||+
T Consensus 14 ~KLSykeqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 14 SKLSYKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999988888777777776665421 111 11122233444444444444444444443
No 3
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=69.63 E-value=30 Score=32.11 Aligned_cols=77 Identities=12% Similarity=0.182 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHhhccc---CCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 011110 23 GQLTEKQEKTREKVIKRTQ-KIAHMKREIDLIRAKDISQ---GGLTQGQQTQIARNEQRIAQIMEELENLEETLNESIRE 98 (493)
Q Consensus 23 g~ltekQqk~~eki~kr~~-Ki~nmk~EidrIraKe~~~---~GLtqGQqtqi~RNEqri~~L~eEle~LEEtLneSire 98 (493)
-+||+.|+...++|+.... ++..++.++...|+.=... .-..+ .+|...-++|..|..+|....-..+..+++
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~De---akI~aL~~Ei~~Lr~qL~~~R~k~~~em~K 142 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDT---AKINAVAKEMESLGQKLDEQRVKRDVAMAQ 142 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999888888866433 3444444433333221111 12222 355555666777777777666666666665
Q ss_pred hhhcc
Q 011110 99 SLGAR 103 (493)
Q Consensus 99 slGAr 103 (493)
. |..
T Consensus 143 e-Gip 146 (175)
T 3lay_A 143 A-GIP 146 (175)
T ss_dssp T-TCC
T ss_pred h-CCC
Confidence 5 553
No 4
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=67.56 E-value=6 Score=32.44 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=30.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011110 60 QGGLTQGQQTQIARNEQRIAQIMEELENLEETLN 93 (493)
Q Consensus 60 ~~GLtqGQqtqi~RNEqri~~L~eEle~LEEtLn 93 (493)
..-||=-.|+.++..+.+|..|..+|..|++.|+
T Consensus 13 ~~KLSykeqrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 13 SSKLSYKLQRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp SCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3579999999999999999999999999998875
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=67.53 E-value=11 Score=38.81 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=24.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011110 63 LTQGQQTQIARNEQRIAQIMEELENLEETLNESI 96 (493)
Q Consensus 63 LtqGQqtqi~RNEqri~~L~eEle~LEEtLneSi 96 (493)
-.+.|+.++.+..|.++.+..+|..|++.+++--
T Consensus 552 ~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~ 585 (597)
T 3oja_B 552 QLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3567777888888888888888888888876654
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=60.53 E-value=48 Score=31.51 Aligned_cols=109 Identities=13% Similarity=0.103 Sum_probs=57.6
Q ss_pred HHHHHHHHhhHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhcccCCcccCccCCCC
Q 011110 37 IKRTQKIAHMKREIDLIRAKDISQGGLTQGQQTQIARNEQRIAQIMEELENLEETLNESIRESLGARSGNTYRGKKKGMG 116 (493)
Q Consensus 37 ~kr~~Ki~nmk~EidrIraKe~~~~GLtqGQqtqi~RNEqri~~L~eEle~LEEtLneSireslGAr~ga~SrrRKkknw 116 (493)
.+.+..++.+-.+|++|+..-... ...|...+..+..|...|..+...|.+--++--...
T Consensus 7 L~~L~~LQ~lD~~i~~l~~~~~~l-------p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e------------- 66 (256)
T 3na7_A 7 LKQLIEISHLDKEIDSLEPLIREK-------RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNE------------- 66 (256)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 456778888888888887655442 244555555555555555555554443222110110
Q ss_pred CCCCCCCCCchhhhcccCCchhhhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 011110 117 EDEEDFLSDDDEFYDRTKKKPSIQKANESQSIETADTLLDKRDVIMKEMEDKKELFEK 174 (493)
Q Consensus 117 EdeDyYDSDDDeFlDRTGKRq~Kkagk~~e~vETYESLl~Kl~el~kEl~e~~e~L~~ 174 (493)
.|-+.+-.|-.+-+.+.. . .....-|+.|...+..+..++..+.+.+..
T Consensus 67 -------~~i~~~~~ri~~~~~~l~-~-v~~~kE~~aL~kEie~~~~~i~~lE~eile 115 (256)
T 3na7_A 67 -------QTLQDTNAKIASIQKKMS-E-IKSERELRSLNIEEDIAKERSNQANREIEN 115 (256)
T ss_dssp -------HHHHHHHHHHHHHHHHHH-H-CSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011122222221121111 1 235677888888888888877777666553
No 7
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=56.70 E-value=26 Score=28.14 Aligned_cols=30 Identities=17% Similarity=0.457 Sum_probs=25.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011110 64 TQGQQTQIARNEQRIAQIMEELENLEETLN 93 (493)
Q Consensus 64 tqGQqtqi~RNEqri~~L~eEle~LEEtLn 93 (493)
+|-+--.-++|..+++.|++||+.+-..|+
T Consensus 27 aQDeFAKWaKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 27 AQDNYAKWTKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355677899999999999999999877775
No 8
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=53.50 E-value=44 Score=27.81 Aligned_cols=66 Identities=24% Similarity=0.252 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011110 29 QEKTREKVIKRTQKIAHMKREIDLIRAKDISQGGLTQGQQTQIARNEQRIAQIMEELENLEETLNE 94 (493)
Q Consensus 29 Qqk~~eki~kr~~Ki~nmk~EidrIraKe~~~~GLtqGQqtqi~RNEqri~~L~eEle~LEEtLne 94 (493)
-.++-+||+.=+..|+-|+-||+.++-|-....-=-+--+...+-..+.+.+|.+|...-.++|+.
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999998865431000000112233566777788887777777654
No 9
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=45.21 E-value=66 Score=27.42 Aligned_cols=31 Identities=16% Similarity=0.440 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011110 65 QGQQTQIARNEQRIAQIMEELENLEETLNES 95 (493)
Q Consensus 65 qGQqtqi~RNEqri~~L~eEle~LEEtLneS 95 (493)
|-+--.-++|..+++.|++||+.+-+.|..+
T Consensus 45 QDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~ 75 (93)
T 3sjb_C 45 QDNYAKWTKNNRKLDSLDKEINNLKDEIQSE 75 (93)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999998888554
No 10
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=45.15 E-value=56 Score=27.03 Aligned_cols=56 Identities=20% Similarity=0.408 Sum_probs=38.9
Q ss_pred HHHHHHH-HHHHhhHHHHHHHHHhhcccCCCchhHHH---HHHHHHHHHHHHHHHHHhHHHHH
Q 011110 34 EKVIKRT-QKIAHMKREIDLIRAKDISQGGLTQGQQT---QIARNEQRIAQIMEELENLEETL 92 (493)
Q Consensus 34 eki~kr~-~Ki~nmk~EidrIraKe~~~~GLtqGQqt---qi~RNEqri~~L~eEle~LEEtL 92 (493)
+|+++|+ +++...+-|++.|+- .+.+|-.||+. -|.|.++....|.++|+-|....
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrr---T~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~ 69 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKR---TEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKD 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666655 578999999999984 55789999873 35556666666666666655544
No 11
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=38.86 E-value=24 Score=35.51 Aligned_cols=51 Identities=10% Similarity=0.129 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011110 45 HMKREIDLIRAKDISQGGLTQGQQTQIARNEQRIAQIMEELENLEETLNESIR 97 (493)
Q Consensus 45 nmk~EidrIraKe~~~~GLtqGQqtqi~RNEqri~~L~eEle~LEEtLneSir 97 (493)
|++.+|+.|.+..-..-..+.. ++|.-++..+.+|.+.|.+||..|+....
T Consensus 6 ~~~~~le~~~~~ik~~~~~~~~--~~I~~Lq~~le~L~~KI~~LE~~v~~q~~ 56 (323)
T 1lwu_B 6 NAQKEIENRYKEVKIRIESTVA--GSLRSMKSVLEHLRAKMQRMEEAIKTQKE 56 (323)
T ss_dssp -CHHHHHHHTHHHHHHHHTTTH--HHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666555544333223333 37777888889999999999998876543
No 12
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=37.58 E-value=76 Score=31.90 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=25.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011110 62 GLTQGQQTQIARNEQRIAQIMEELENLEETLNES 95 (493)
Q Consensus 62 GLtqGQqtqi~RNEqri~~L~eEle~LEEtLneS 95 (493)
..+||| ..|...|..|..|.-+|++++..|.+-
T Consensus 437 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 437 EKAQGQ-KKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346755 488888888888888888888887653
No 13
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=36.53 E-value=57 Score=29.02 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011110 31 KTREKVIKRTQKIAHMKREIDLIRAKDISQGGLTQGQQTQIARNEQRIAQIMEELENLEETLNES 95 (493)
Q Consensus 31 k~~eki~kr~~Ki~nmk~EidrIraKe~~~~GLtqGQqtqi~RNEqri~~L~eEle~LEEtLneS 95 (493)
.+.+.|......|..|+.|+-..+-|- ......+.....++..|+++|-.||..|+++
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~-------e~~~~e~~~l~~~~~~l~~~~~~le~~~~~~ 136 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKA-------ESSAKEIKELKSEINKYQKNIVKLETELNDS 136 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444555555544444332 3445566666666666666666666666543
No 14
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=35.39 E-value=19 Score=27.62 Aligned_cols=34 Identities=6% Similarity=0.237 Sum_probs=24.8
Q ss_pred CCChHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHH
Q 011110 189 SGDALDAYMSGLSSQLVLDKTMQHQKELSTLQSELDRIL 227 (493)
Q Consensus 189 ~~DsLDAFMs~L~S~l~~DkveKLr~eL~eLkkE~qRL~ 227 (493)
+.+.+|+|+..|... ++.|..+..+|+.++.+|.
T Consensus 21 ~~~EVD~FLd~v~~~-----~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 21 DEDEVNEFLAQVRKD-----YEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp EHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 348999999998654 6677777778877777665
No 15
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=35.13 E-value=48 Score=23.91 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011110 206 LDKTMQHQKELSTLQSELDRILYLLK 231 (493)
Q Consensus 206 ~DkveKLr~eL~eLkkE~qRL~kLLK 231 (493)
-+|++.|-.+...|+.|..||+.|+.
T Consensus 7 E~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 7 KAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 46799999999999999999999985
No 16
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=34.55 E-value=29 Score=35.10 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011110 68 QTQIARNEQRIAQIMEELENLEETLNE 94 (493)
Q Consensus 68 qtqi~RNEqri~~L~eEle~LEEtLne 94 (493)
..+|..++..|..+...|.+|+..|..
T Consensus 25 ~~~i~~L~~~l~~~~~~i~~l~~~i~~ 51 (323)
T 1lwu_C 25 DAQIQELSEMWRVNQQFVTRLQQQLVD 51 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555543
No 17
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=34.07 E-value=42 Score=23.96 Aligned_cols=26 Identities=35% Similarity=0.349 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011110 206 LDKTMQHQKELSTLQSELDRILYLLK 231 (493)
Q Consensus 206 ~DkveKLr~eL~eLkkE~qRL~kLLK 231 (493)
-||++.|-.+...|..|..||+.||.
T Consensus 7 EdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 7 EDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 35788888999999999999999973
No 18
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=33.41 E-value=78 Score=25.37 Aligned_cols=57 Identities=11% Similarity=0.201 Sum_probs=34.2
Q ss_pred HHHhhHHHHHHHHHhhcccC-CCch------hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 011110 42 KIAHMKREIDLIRAKDISQG-GLTQ------GQQTQIARNEQRIAQIMEELENLEETLNESIRE 98 (493)
Q Consensus 42 Ki~nmk~EidrIraKe~~~~-GLtq------GQqtqi~RNEqri~~L~eEle~LEEtLneSire 98 (493)
||+.|+.|.+....+-.... -|.+ ---.-|.-+..+|..|+.+||.++++|.+....
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~k 70 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777665443322221 1110 011235567778899999999999999776653
No 19
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=32.91 E-value=46 Score=23.65 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 011110 207 DKTMQHQKELSTLQSELDRILYLLK 231 (493)
Q Consensus 207 DkveKLr~eL~eLkkE~qRL~kLLK 231 (493)
++++.|-.+-.+|+.|..||+.|+.
T Consensus 7 ~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 7 AKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 5788899999999999999999874
No 20
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=32.87 E-value=53 Score=23.30 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011110 206 LDKTMQHQKELSTLQSELDRILYLLK 231 (493)
Q Consensus 206 ~DkveKLr~eL~eLkkE~qRL~kLLK 231 (493)
-||++.|-.+...|..|..||+.|+.
T Consensus 6 EdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 6 EDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 36788899999999999999999973
No 21
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=31.80 E-value=3.2e+02 Score=31.53 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 011110 207 DKTMQHQKELSTLQSELDRIL 227 (493)
Q Consensus 207 DkveKLr~eL~eLkkE~qRL~ 227 (493)
+++..|+.+...|+.+++.|.
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555
No 22
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=31.74 E-value=57 Score=23.29 Aligned_cols=26 Identities=27% Similarity=0.192 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011110 206 LDKTMQHQKELSTLQSELDRILYLLK 231 (493)
Q Consensus 206 ~DkveKLr~eL~eLkkE~qRL~kLLK 231 (493)
-||++.|-.+...|..|..||+.|+.
T Consensus 7 EdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 7 EXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 36788888999999999999999973
No 23
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=30.34 E-value=62 Score=23.13 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 011110 206 LDKTMQHQKELSTLQSELDRILYLL 230 (493)
Q Consensus 206 ~DkveKLr~eL~eLkkE~qRL~kLL 230 (493)
-||++.|-.+...|..|..||+.||
T Consensus 7 edKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 7 ADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4678888899999999999999987
No 24
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=29.94 E-value=76 Score=27.11 Aligned_cols=29 Identities=17% Similarity=0.465 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011110 65 QGQQTQIARNEQRIAQIMEELENLEETLN 93 (493)
Q Consensus 65 qGQqtqi~RNEqri~~L~eEle~LEEtLn 93 (493)
|-+--.-++|..+++.|++||+.+-+.|.
T Consensus 52 QDEFAKWAKL~Rk~DKl~~ele~l~~~L~ 80 (94)
T 3vlc_E 52 QDNYAKWTKNNRKLDSLDKEINNLKDEIQ 80 (94)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999988874
No 25
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=28.50 E-value=1.1e+02 Score=27.32 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHh-hHHHHHHHHHhhcccCCCchh-----HHHHHHHHHHHHHHHHHHHHhH
Q 011110 33 REKVIKRTQKIAH-MKREIDLIRAKDISQGGLTQG-----QQTQIARNEQRIAQIMEELENL 88 (493)
Q Consensus 33 ~eki~kr~~Ki~n-mk~EidrIraKe~~~~GLtqG-----Qqtqi~RNEqri~~L~eEle~L 88 (493)
+++++..+..+.+ -+.++-...+--+..|-|++- .+.....++.||..|...|.++
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~A 72 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENL 72 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444444444422 333444444445566778775 4677788888888887777664
No 26
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=28.40 E-value=75 Score=23.66 Aligned_cols=37 Identities=35% Similarity=0.455 Sum_probs=28.3
Q ss_pred HHHhhcccchh--hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011110 195 AYMSGLSSQLV--LDKTMQHQKELSTLQSELDRILYLLK 231 (493)
Q Consensus 195 AFMs~L~S~l~--~DkveKLr~eL~eLkkE~qRL~kLLK 231 (493)
|||+.|.+... ..+...|..++..|+.|-+-|++.|+
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 78888875532 33455789999999999999988775
No 27
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=28.30 E-value=24 Score=29.82 Aligned_cols=31 Identities=16% Similarity=0.408 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 011110 70 QIARNEQRIAQIMEELENLEETLNESIRESL 100 (493)
Q Consensus 70 qi~RNEqri~~L~eEle~LEEtLneSiresl 100 (493)
||+.|.+||.+|...|++++..++..|--++
T Consensus 10 q~~~~~~~~~~l~~~i~~~~~~~~~g~A~a~ 40 (105)
T 2lme_A 10 QFEKGAHKFRQLDNRLDKLDTRVDKGLASSA 40 (105)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999998875443
No 28
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.36 E-value=1.3e+02 Score=30.33 Aligned_cols=58 Identities=10% Similarity=0.030 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011110 36 VIKRTQKIAHMKREIDLIRAKDISQGGLTQGQQTQIARNEQRIAQIMEELENLEETLNESI 96 (493)
Q Consensus 36 i~kr~~Ki~nmk~EidrIraKe~~~~GLtqGQqtqi~RNEqri~~L~eEle~LEEtLneSi 96 (493)
|.++..++.+|..+.+..|.+-.+. ..+-+..|.+..++-..+.++|++++..|.+.+
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRD---WDMYQHKETQLAEENARLKKLNGEADLALASAN 469 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhh---hhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence 3344444555555555544432222 223344444444444444555555555554433
No 29
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.69 E-value=62 Score=24.07 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=25.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011110 149 ETADTLLDKRDVIMKEMEDKKELFEKEKDKM 179 (493)
Q Consensus 149 ETYESLl~Kl~el~kEl~e~~e~L~~ek~K~ 179 (493)
.|-|.|+.|+..+.+||+...+++...+.+.
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMVEQQISKLKKKQ 32 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999998888655443
No 30
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.15 E-value=90 Score=22.29 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 011110 207 DKTMQHQKELSTLQSELDRILYLLK 231 (493)
Q Consensus 207 DkveKLr~eL~eLkkE~qRL~kLLK 231 (493)
++++.|-.+-.+|+.|..||+-|+.
T Consensus 8 ~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 8 XKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 5688888888999999999999873
No 31
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.01 E-value=75 Score=23.64 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 011110 70 QIARNEQRIAQIMEELENLEET 91 (493)
Q Consensus 70 qi~RNEqri~~L~eEle~LEEt 91 (493)
-|++.++.|..|+.-+..||+.
T Consensus 17 EI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 17 EITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666666664
No 32
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=25.31 E-value=87 Score=22.24 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011110 206 LDKTMQHQKELSTLQSELDRILYLLK 231 (493)
Q Consensus 206 ~DkveKLr~eL~eLkkE~qRL~kLLK 231 (493)
-||++.|-.+-..|..|..||+.|+.
T Consensus 6 EdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 6 EXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 35788888888999999999999873
No 33
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=25.24 E-value=1.6e+02 Score=26.19 Aligned_cols=56 Identities=25% Similarity=0.238 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHh-hHHHHHHHHHhhcccCCCchhH-----HHHHHHHHHHHHHHHHHHHhH
Q 011110 33 REKVIKRTQKIAH-MKREIDLIRAKDISQGGLTQGQ-----QTQIARNEQRIAQIMEELENL 88 (493)
Q Consensus 33 ~eki~kr~~Ki~n-mk~EidrIraKe~~~~GLtqGQ-----qtqi~RNEqri~~L~eEle~L 88 (493)
+++++..+..+.+ -+-+|-...+--+..|-|++-- +.....++.||..|..+|.++
T Consensus 11 ~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~a 72 (158)
T 1grj_A 11 AEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNA 72 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445555544444 3344444334455678888753 344566667777777777664
No 34
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=24.93 E-value=1.1e+02 Score=35.25 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 011110 72 ARNEQRIAQIMEELENLEETL 92 (493)
Q Consensus 72 ~RNEqri~~L~eEle~LEEtL 92 (493)
.+.+.++.+|.++|+++++.|
T Consensus 916 ~~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 916 VRLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444
No 35
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=24.63 E-value=2.8e+02 Score=28.45 Aligned_cols=65 Identities=12% Similarity=0.162 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcccCCCchhH-----HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011110 28 KQEKTREKVIKRTQKIAHMKREIDLIRAKDISQGGLTQGQ-----QTQIARNEQRIAQIMEELENLEETLNESI 96 (493)
Q Consensus 28 kQqk~~eki~kr~~Ki~nmk~EidrIraKe~~~~GLtqGQ-----qtqi~RNEqri~~L~eEle~LEEtLneSi 96 (493)
.=..+.++.+.-+.++.+|+.+...| +|++++ ..|+ ..+...+-.+|..|.+++..+++.|++-+
T Consensus 29 ~~~~~~~~~r~~~~~~~~l~~~~n~~-sk~i~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 29 ALLALDREVQELKKRLQEVQTERNQV-AKRVPK---APPEEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHSSS---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh---hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666666677777777777766 456665 3333 23334445556666666666666665544
No 36
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=24.51 E-value=56 Score=24.42 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q 011110 70 QIARNEQRIAQIMEELENLEETLN 93 (493)
Q Consensus 70 qi~RNEqri~~L~eEle~LEEtLn 93 (493)
.|..++++|..|+..|..|+..|.
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777788777777777766553
No 37
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=24.14 E-value=1.4e+02 Score=33.67 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=37.1
Q ss_pred HHhhHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011110 43 IAHMKREIDLIRAKDISQGGLTQGQQTQIARNEQRIAQIMEELENLEETLN 93 (493)
Q Consensus 43 i~nmk~EidrIraKe~~~~GLtqGQqtqi~RNEqri~~L~eEle~LEEtLn 93 (493)
++.+++++.++..|-...+=+.--=..-++.+.+++..++++|+.|++.|.
T Consensus 809 ~~~~~~~~~~~~~~l~~~~f~~~ap~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (862)
T 1gax_A 809 LKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALS 859 (862)
T ss_dssp HHHHHHHHHHHHHHHTSTTTSSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCchhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788999999998887644322222367778888888888888888775
No 38
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=24.01 E-value=74 Score=22.73 Aligned_cols=26 Identities=31% Similarity=0.208 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011110 206 LDKTMQHQKELSTLQSELDRILYLLK 231 (493)
Q Consensus 206 ~DkveKLr~eL~eLkkE~qRL~kLLK 231 (493)
-||++.|-.+-..|..|..||+.||.
T Consensus 7 EdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 7 EDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 36788888888999999999999873
No 39
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=22.49 E-value=2.4e+02 Score=24.65 Aligned_cols=25 Identities=4% Similarity=0.198 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 011110 156 DKRDVIMKEMEDKKELFEKEKDKMA 180 (493)
Q Consensus 156 ~Kl~el~kEl~e~~e~L~~ek~K~a 180 (493)
.-+.+|..||...+.+|.+.+.|+.
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLk 59 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLK 59 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788899998889987666664
No 40
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=22.06 E-value=1.1e+02 Score=22.01 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 011110 207 DKTMQHQKELSTLQSELDRILYLLK 231 (493)
Q Consensus 207 DkveKLr~eL~eLkkE~qRL~kLLK 231 (493)
++++.|-.+...|..|..||+.|+.
T Consensus 8 ~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 8 AEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 5788888899999999999999985
No 41
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=21.67 E-value=1.6e+02 Score=25.54 Aligned_cols=81 Identities=21% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCChHH----------HHHhhcccch---------hhhhHHHH
Q 011110 152 DTLLDKRDVIMKEMEDKKELFEKEKDKMASETDVETESGDALD----------AYMSGLSSQL---------VLDKTMQH 212 (493)
Q Consensus 152 ESLl~Kl~el~kEl~e~~e~L~~ek~K~ak~~~~~~s~~DsLD----------AFMs~L~S~l---------~~DkveKL 212 (493)
+.++.++-.|..++.++...+-+.-...++.+++-....-.++ |-|....-+. ..++++-|
T Consensus 9 ~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaL 88 (114)
T 2xzr_A 9 EEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEI 88 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 011110 213 QKELSTLQSELDRILYLLKF 232 (493)
Q Consensus 213 r~eL~eLkkE~qRL~kLLKI 232 (493)
-.+..-|..|..||++|||+
T Consensus 89 lsk~yh~ene~ar~kkl~~~ 108 (114)
T 2xzr_A 89 LSKIYHIENEIARIKKLIKL 108 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHH
No 42
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.64 E-value=2.8e+02 Score=23.23 Aligned_cols=27 Identities=11% Similarity=0.383 Sum_probs=11.8
Q ss_pred CCCHHHHHHHHHHHHH--HHHHHhhHHHH
Q 011110 24 QLTEKQEKTREKVIKR--TQKIAHMKREI 50 (493)
Q Consensus 24 ~ltekQqk~~eki~kr--~~Ki~nmk~Ei 50 (493)
.|+.+..-.-+.|..+ .++|.+||.-+
T Consensus 21 aFgKrEaA~Ee~YfrqkekEqL~~LKkkl 49 (84)
T 1gmj_A 21 AFGKREQAEEERYFRARAKEQLAALKKHK 49 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344443333443333 33466665544
No 43
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=21.37 E-value=20 Score=33.36 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=0.0
Q ss_pred ccCccCCCCCCCCCCCCCchhh
Q 011110 108 YRGKKKGMGEDEEDFLSDDDEF 129 (493)
Q Consensus 108 SrrRKkknwEdeDyYDSDDDeF 129 (493)
.|+.+++.|...|..++|+|+|
T Consensus 221 Ar~~r~GlW~~gd~~~dd~~~~ 242 (246)
T 2hqx_A 221 AKSARLNLWRYGDFRADDADEF 242 (246)
T ss_dssp ----------------------
T ss_pred HHHhccCcccCCCCCccccccc
Confidence 4777889999999988888888
No 44
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=21.33 E-value=4.7e+02 Score=24.61 Aligned_cols=53 Identities=19% Similarity=0.166 Sum_probs=33.1
Q ss_pred HHHHHHhhHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011110 39 RTQKIAHMKREIDLIRAKDISQGGLTQGQQTQIARNEQRIAQIMEELENLEETLNE 94 (493)
Q Consensus 39 r~~Ki~nmk~EidrIraKe~~~~GLtqGQqtqi~RNEqri~~L~eEle~LEEtLne 94 (493)
-..++..|+.|++.++.|-.+... =-.++|..++..|.+|.+..+.|-..|++
T Consensus 61 L~~~~~~L~~E~e~~k~K~~~~~~---e~~~~~~~Lq~el~~l~~~~~~l~~~ire 113 (189)
T 2v71_A 61 LQADNQRLKYEVEALKEKLEHQYA---QSYKQVSVLEDDLSQTRAIKEQLHKYVRE 113 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999743210 00224666666666666666666655543
No 45
>2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION coordination, hydrophobic core, TAA, stutter, stammer, coiled coil; 2.60A {Salmonella enterica subsp} PDB: 2wpr_A
Probab=21.19 E-value=74 Score=27.74 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011110 206 LDKTMQHQKELSTLQSELDRILYLLKFA 233 (493)
Q Consensus 206 ~DkveKLr~eL~eLkkE~qRL~kLLKIA 233 (493)
-||++.+-.+..-|..|..||++|||+-
T Consensus 75 ed~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (107)
T 2wps_A 75 EDKIEEILSKIYHIENEIARIKKLIKLH 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678888888889999999999999874
No 46
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.42 E-value=72 Score=21.36 Aligned_cols=16 Identities=38% Similarity=0.692 Sum_probs=13.6
Q ss_pred HHHHHHHHhHHHHHHH
Q 011110 79 AQIMEELENLEETLNE 94 (493)
Q Consensus 79 ~~L~eEle~LEEtLne 94 (493)
+.|-+|||+|.|+|+.
T Consensus 4 delykeledlqerlrk 19 (27)
T 3twe_A 4 DELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5788999999999874
No 47
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=20.19 E-value=9.2e+02 Score=31.61 Aligned_cols=18 Identities=0% Similarity=0.263 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011110 211 QHQKELSTLQSELDRILY 228 (493)
Q Consensus 211 KLr~eL~eLkkE~qRL~k 228 (493)
|+...+..|+.+..+|..
T Consensus 2088 RW~~~~~~l~~~~~~L~G 2105 (3245)
T 3vkg_A 2088 RWEQQSENFNTQMSTVVG 2105 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccH
Confidence 566666777777776655
No 48
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=20.06 E-value=1.2e+02 Score=27.69 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 011110 208 KTMQHQKELSTLQSELDRILYLLKFADPT 236 (493)
Q Consensus 208 kveKLr~eL~eLkkE~qRL~kLLKIAKPA 236 (493)
.++.+...|..+.+++..+...|+..||.
T Consensus 55 ql~~v~kdi~~a~~eL~~m~~~i~~ekP~ 83 (141)
T 3okq_A 55 KLETVSKDLENAQADVLKLQEFIDTEKPH 83 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 45567778888888888888888888875
No 49
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=20.05 E-value=35 Score=27.96 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=25.3
Q ss_pred CCCCCchhhhcccC------Cc-hhhhhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 011110 121 DFLSDDDEFYDRTK------KK-PSIQKANESQSIETADTLLDKRDVIMKEMEDKKELFE 173 (493)
Q Consensus 121 yYDSDDDeFlDRTG------KR-q~Kkagk~~e~vETYESLl~Kl~el~kEl~e~~e~L~ 173 (493)
..|.+||.|++|=- +| +.+...+..+.-..++.|...-..|..+|..+...+.
T Consensus 8 ~~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 8 TVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999643 22 2222222123334445555544455555555444443
Done!