Query 011110
Match_columns 493
No_of_seqs 95 out of 97
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 21:01:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011110.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011110hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 51.7 41 0.003 26.0 9.0 78 16-95 18-97 (110)
2 d1ivsa1 a.2.7.3 (A:797-862) Va 50.0 18 0.0013 26.1 6.0 51 43-93 13-63 (66)
3 d1vp7a_ a.7.13.1 (A:) Exonucle 45.9 14 0.001 27.6 4.9 60 146-222 3-63 (68)
4 d2fcwa1 a.13.1.1 (A:216-320) a 29.7 1.3E+02 0.0095 24.1 10.8 76 21-96 16-100 (105)
5 d1k4ta1 a.2.8.1 (A:641-712) Eu 25.6 1.3E+02 0.0094 22.7 8.7 58 30-89 5-62 (72)
6 d1s35a1 a.7.1.1 (A:1063-1168) 22.2 1.3E+02 0.0095 21.5 7.9 29 145-173 28-56 (106)
7 d2gmha3 d.58.1.6 (A:483-584) E 16.3 17 0.0012 29.2 0.5 13 469-481 84-96 (102)
8 d2spca_ a.7.1.1 (A:) Spectrin 15.9 1.8E+02 0.013 20.6 8.3 28 146-173 33-60 (107)
9 d2f66c1 a.2.17.3 (C:142-206) V 14.0 78 0.0057 23.5 3.6 13 188-200 35-47 (65)
10 d1quua1 a.7.1.1 (A:1-124) alph 13.8 2.3E+02 0.017 20.8 7.5 30 145-174 44-73 (124)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=51.69 E-value=41 Score=25.97 Aligned_cols=78 Identities=13% Similarity=0.114 Sum_probs=42.3
Q ss_pred hhhccccCCCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcccCC--CchhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011110 16 VTWQTYKGQLTEKQEKTREKVIKRTQKIAHMKREIDLIRAKDISQGG--LTQGQQTQIARNEQRIAQIMEELENLEETLN 93 (493)
Q Consensus 16 ~~wq~y~g~ltekQqk~~eki~kr~~Ki~nmk~EidrIraKe~~~~G--LtqGQqtqi~RNEqri~~L~eEle~LEEtLn 93 (493)
+..|-|...| +.=..+.++.+.-+.++.+|+.+...+ +|+++..- =.+....+....-..|..|.+++..+++.|+
T Consensus 18 l~~R~~~~~l-d~i~~ld~~rr~l~~~~e~l~~~rN~~-sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~ 95 (110)
T d1seta1 18 IREKGVALDL-EALLALDREVQELKKRLQEVQTERNQV-AKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLE 95 (110)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555554 455677777777888888888888775 56665421 0011122233333444555555555555554
Q ss_pred HH
Q 011110 94 ES 95 (493)
Q Consensus 94 eS 95 (493)
+-
T Consensus 96 ~~ 97 (110)
T d1seta1 96 AL 97 (110)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 2
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=50.05 E-value=18 Score=26.10 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=32.2
Q ss_pred HHhhHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011110 43 IAHMKREIDLIRAKDISQGGLTQGQQTQIARNEQRIAQIMEELENLEETLN 93 (493)
Q Consensus 43 i~nmk~EidrIraKe~~~~GLtqGQqtqi~RNEqri~~L~eEle~LEEtLn 93 (493)
+..+..+|.+|..|=...+=+.-==..-++.+.+++..+..+|+.+++.|.
T Consensus 13 l~kl~~~i~~~~~kL~N~~F~~kAP~~Vv~~~k~kl~~~~~~~~~l~~~l~ 63 (66)
T d1ivsa1 13 LKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALS 63 (66)
T ss_dssp HHHHHHHHHHHHHHHTSTTHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCChHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666778888888887766533322223355556666667777777666654
No 3
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=45.89 E-value=14 Score=27.57 Aligned_cols=60 Identities=18% Similarity=0.339 Sum_probs=35.7
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCChHHHHHhhcc-cchhhhhHHHHHHHHHHHHHH
Q 011110 146 QSIETADTLLDKRDVIMKEMEDKKELFEKEKDKMASETDVETESGDALDAYMSGLS-SQLVLDKTMQHQKELSTLQSE 222 (493)
Q Consensus 146 e~vETYESLl~Kl~el~kEl~e~~e~L~~ek~K~ak~~~~~~s~~DsLDAFMs~L~-S~l~~DkveKLr~eL~eLkkE 222 (493)
..+.||++.+.++++|...|+. . .-.=+++|..|=.++. .......+...++++..|..+
T Consensus 3 ~~p~sfEe~l~~LE~IV~~LE~---------------g--~l~Leesl~~ye~G~~L~~~C~~~L~~ae~ki~~l~~~ 63 (68)
T d1vp7a_ 3 PLPQDFETALAELESLVSAMEN---------------G--TLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGD 63 (68)
T ss_dssp CBCCSHHHHHHHHHHHHHHHHT---------------T--CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhC---------------C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4577999999988777755533 0 1122477777777775 322334444555555555443
No 4
>d2fcwa1 a.13.1.1 (A:216-320) alpha-2-Macroglobulin receptor associated protein (RAP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.74 E-value=1.3e+02 Score=24.13 Aligned_cols=76 Identities=16% Similarity=0.214 Sum_probs=52.5
Q ss_pred ccCCCCHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHhhc-----ccCCCchhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 011110 21 YKGQLTEKQ----EKTREKVIKRTQKIAHMKREIDLIRAKDI-----SQGGLTQGQQTQIARNEQRIAQIMEELENLEET 91 (493)
Q Consensus 21 y~g~ltekQ----qk~~eki~kr~~Ki~nmk~EidrIraKe~-----~~~GLtqGQqtqi~RNEqri~~L~eEle~LEEt 91 (493)
-.++||+.- ....--+.+|+.|+.|++.|+..-.+|-. +.++...-++....-.+..|-.+---++.|-..
T Consensus 16 ~~~nFt~~EL~SlkeEL~HfE~rl~K~rH~~~el~ls~ek~~~~e~~g~~~~~~~~~e~~~~le~kiKk~~~kV~Kl~~d 95 (105)
T d2fcwa1 16 QSANLTDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQD 95 (105)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899876 34445688999999999999877666643 334455556666666777776666666666666
Q ss_pred HHHHH
Q 011110 92 LNESI 96 (493)
Q Consensus 92 LneSi 96 (493)
|...|
T Consensus 96 Le~rI 100 (105)
T d2fcwa1 96 LSGRI 100 (105)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
No 5
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.63 E-value=1.3e+02 Score=22.70 Aligned_cols=58 Identities=14% Similarity=0.278 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHHHhHH
Q 011110 30 EKTREKVIKRTQKIAHMKREIDLIRAKDISQGGLTQGQQTQIARNEQRIAQIMEELENLE 89 (493)
Q Consensus 30 qk~~eki~kr~~Ki~nmk~EidrIraKe~~~~GLtqGQqtqi~RNEqri~~L~eEle~LE 89 (493)
+.+.++|..+-.=|.-++.|+-.+.+--...| +.--.+.+++...++..|.+.|-.||
T Consensus 5 enLq~KI~~Kk~qi~~a~~e~K~ak~d~k~~~--~~k~k~~~ekKkK~leRL~EQL~KLe 62 (72)
T d1k4ta1 5 MNLQTKIDAKKEQLADARRDLKSAKADAKVMK--DAKTKKVVESKKKAVQRLEEQLMKLE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999998875433333 66667777777777777777776665
No 6
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.17 E-value=1.3e+02 Score=21.52 Aligned_cols=29 Identities=21% Similarity=0.467 Sum_probs=22.9
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 011110 145 SQSIETADTLLDKRDVIMKEMEDKKELFE 173 (493)
Q Consensus 145 ~e~vETYESLl~Kl~el~kEl~e~~e~L~ 173 (493)
...+.+...++.++..+..+|...+..+.
T Consensus 28 ~~d~~~~~~~l~~h~~l~~ei~~~~~~~~ 56 (106)
T d1s35a1 28 PESLPEAEQLLQQHAGIKDEIDGHQDSYQ 56 (106)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788899999999999988766555
No 7
>d2gmha3 d.58.1.6 (A:483-584) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}
Probab=16.34 E-value=17 Score=29.22 Aligned_cols=13 Identities=46% Similarity=0.956 Sum_probs=11.0
Q ss_pred CCCcCCCCCCCCC
Q 011110 469 DYESWVPPEGQSG 481 (493)
Q Consensus 469 d~~~wvppegqsg 481 (493)
.++.|.+|+|-+|
T Consensus 84 ~nI~W~~P~GG~G 96 (102)
T d2gmha3 84 QNINWVVPEGGGG 96 (102)
T ss_dssp CCEEECCCSTTCB
T ss_pred CceEEECCCCCCC
Confidence 4679999999877
No 8
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]}
Probab=15.85 E-value=1.8e+02 Score=20.61 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=23.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 011110 146 QSIETADTLLDKRDVIMKEMEDKKELFE 173 (493)
Q Consensus 146 e~vETYESLl~Kl~el~kEl~e~~e~L~ 173 (493)
..+.+.++|+.++..+..+|......+.
T Consensus 33 ~d~~~~~~l~~~h~~~~~ei~~~~~~~~ 60 (107)
T d2spca_ 33 NAGGNVEALIKKHEDFDKAINGHEQKIA 60 (107)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4577899999999999999988776555
No 9
>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.00 E-value=78 Score=23.51 Aligned_cols=13 Identities=31% Similarity=0.677 Sum_probs=10.0
Q ss_pred CCCChHHHHHhhc
Q 011110 188 ESGDALDAYMSGL 200 (493)
Q Consensus 188 s~~DsLDAFMs~L 200 (493)
...++||+|+.+-
T Consensus 35 ~~s~elD~Fi~qY 47 (65)
T d2f66c1 35 DSADDLDQFIKNY 47 (65)
T ss_dssp CSHHHHHHHHHHH
T ss_pred cchhHHHHHHHHH
Confidence 3557899999864
No 10
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.83 E-value=2.3e+02 Score=20.78 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=24.2
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 011110 145 SQSIETADTLLDKRDVIMKEMEDKKELFEK 174 (493)
Q Consensus 145 ~e~vETYESLl~Kl~el~kEl~e~~e~L~~ 174 (493)
...+.+.+.|+.++..+..+|......+..
T Consensus 44 ~~d~~~v~~l~~~h~~~~~~i~~~~~~v~~ 73 (124)
T d1quua1 44 SASLTEVRALLRKHEAFESDLAAHQDRVEQ 73 (124)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 355677888999999999999988776664
Done!