BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011111
(493 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255578939|ref|XP_002530322.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223530126|gb|EEF32038.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 481
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/497 (73%), Positives = 413/497 (83%), Gaps = 20/497 (4%)
Query: 1 MPRTRGSTAAADNPDAPENPTEREKPIESEERVDLDEDNDHEEEVEEEVEYEEVEEEEEV 60
MPRTRGS AA D PE K +ES+E VDLD DN EE +EEEVEYEEVEEEEEV
Sbjct: 1 MPRTRGSVDAAHKQDEPE------KLVESDEGVDLDGDNGQEETMEEEVEYEEVEEEEEV 54
Query: 61 EVEEEVEEEVEEEEETEDV----VDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALP 116
E EE EEEVEEE E E+ + DAQK D +E DE++KHAELLALP
Sbjct: 55 EEIEEEEEEVEEEVEEEEEIEESANEADAQKGSDSEE--------GQDEERKHAELLALP 106
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PHGSEVYLGGIP DAS+ DLRHFC+SIGEVTEVRIMKGK S + KGYAFVTFR+KELAS+
Sbjct: 107 PHGSEVYLGGIPIDASEQDLRHFCESIGEVTEVRIMKGKASSDTKGYAFVTFRSKELASK 166
Query: 177 AIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDP 236
AIE+LN+ E KG+KIKCS +QA HRLF+GNVPR+W E DM + V KIGPGVIS+EL+KDP
Sbjct: 167 AIEQLNNTEFKGRKIKCSTSQANHRLFLGNVPRDWEEKDMMQVVMKIGPGVISVELLKDP 226
Query: 237 QNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKAL 296
QN+++NRGFAFIEYYNHACA+YSR+KMSNP+FKLDDNAPTVSWADP+NA SSAASQVKA+
Sbjct: 227 QNSSRNRGFAFIEYYNHACADYSRKKMSNPQFKLDDNAPTVSWADPKNAGSSAASQVKAV 286
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
YVKNLP DITQDRL++LF HGK+TKVV+PPAK G ERSR+ FVHFAERSSAMKALKNTE
Sbjct: 287 YVKNLPHDITQDRLRQLFERHGKVTKVVVPPAKAGHERSRFAFVHFAERSSAMKALKNTE 346
Query: 357 KYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPA 416
KYEIDGQVL+CSLAKPQADQK+SGGSN QKS L+PT+PP LGYG+VGG YGALGAGY A
Sbjct: 347 KYEIDGQVLECSLAKPQADQKSSGGSNLQKSVLHPTFPPRLGYGLVGGTYGALGAGY-GA 405
Query: 417 GFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGAGSSSSG 476
FAQPM+YGRG P G++M+PMLLPDGRIGYV+QQPG+Q PP QPR+GRGG+ SSSG
Sbjct: 406 SFAQPMIYGRGPTPAGISMMPMLLPDGRIGYVMQQPGMQPQTPPSQPRAGRGGSAGSSSG 465
Query: 477 GRRSTDNGRGRSRYNPY 493
GRRS +N RGR RYNPY
Sbjct: 466 GRRSNENNRGR-RYNPY 481
>gi|225464938|ref|XP_002275366.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Vitis
vinifera]
Length = 503
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 352/504 (69%), Positives = 412/504 (81%), Gaps = 12/504 (2%)
Query: 1 MPRTRGSTAAADNPDAPENPTEREKPIESEERVDLDEDNDHEEEVEEEVEYEEVEEEEEV 60
MPR +G+ +A P PE +E EKPIES+ERVDLDEDND +E ++EEVEYEEVE EEEV
Sbjct: 1 MPRAKGNASATCKPVEPEKLSEPEKPIESDERVDLDEDNDPDEAMDEEVEYEEVEVEEEV 60
Query: 61 EVEEEVEEEVEEEEETEDVVDGIDAQKHYDGDEEMKVA----ESDKDDEKKKHAELLALP 116
E EE EE E EEE E+V + + ++ + DE+ + + + +DE KKHAELLALP
Sbjct: 61 EEVEEEVEEEEVEEEEEEVEEEEEEEEANEADEQKSPSGGGGKIEDEDESKKHAELLALP 120
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PHGSEVY+GGI DAS++DL+ FC+S+GEVTEVRIMKGKDSGE KG+AFVTFR ELAS+
Sbjct: 121 PHGSEVYVGGISQDASEEDLKSFCESVGEVTEVRIMKGKDSGENKGFAFVTFRNVELASK 180
Query: 177 AIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDP 236
AIEELN+ E KG+KIKCS +QAKHRLFIGNVPR+WGE+D++K VT+IGPGV ++ELVKD
Sbjct: 181 AIEELNNTEFKGRKIKCSTSQAKHRLFIGNVPRSWGEEDIKKVVTEIGPGVTAVELVKDM 240
Query: 237 QNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKAL 296
+N++ NRGFAFI+YYNHACAEYSRQKM NPKFKLD+NAPTVSWADP+NA+SS ASQVKA+
Sbjct: 241 KNSSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDNNAPTVSWADPKNADSSPASQVKAV 300
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
YVKNLPK+ITQD+LK+LF HHGKITKVV+PPAK GQE+SR GFVHFAERSSAMKALKNTE
Sbjct: 301 YVKNLPKNITQDQLKQLFEHHGKITKVVLPPAKSGQEKSRIGFVHFAERSSAMKALKNTE 360
Query: 357 KYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPA 416
KYEIDGQVL+CSLAKPQADQK+ GGSNSQKS L +YPP +GYG VGGAYGALGAGY A
Sbjct: 361 KYEIDGQVLECSLAKPQADQKSVGGSNSQKSGLLSSYPPRVGYGFVGGAYGALGAGYGTA 420
Query: 417 GFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQ-------PRSGRGG 469
GFAQP++YGRG P GMAM+PMLLPDGRIGYVLQQPG Q H PP
Sbjct: 421 GFAQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGAQPHTPPSHQRSSGRGGSGSGSK 480
Query: 470 AGSSSSGGRRSTDNGRGRSRYNPY 493
+G SSS GR + D G GR RY+PY
Sbjct: 481 SGGSSSRGRHNNDGGHGR-RYHPY 503
>gi|225440864|ref|XP_002276509.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Vitis
vinifera]
Length = 490
Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust.
Identities = 346/494 (70%), Positives = 399/494 (80%), Gaps = 5/494 (1%)
Query: 1 MPRTRGSTAAA-DNPDAPENPTEREKPIESEERVDLDEDNDHEEEVEEEVEYEEVEEEEE 59
MPRTR S AAA NP+ ENP E EKP E EERVDLD DN+ +E E E E E E EE
Sbjct: 1 MPRTRASAAAAAQNPNVSENPIECEKPAEPEERVDLDGDNEDTKEEEVESEEVEEEVEEI 60
Query: 60 VEVEEEVEEEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHG 119
E EEE EE EE+E E+ DAQK DGD+E+K A+ + D+E ++HAELLALPPHG
Sbjct: 61 EEEEEEEVEEEVEEDEEEEDTYFADAQKDPDGDDEIKSAKGEVDNENRRHAELLALPPHG 120
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
SEVYLGGIP++AS++DLR FC+ +GEVTEVRI+KGKDS E KGYAFVTFRTKELAS+A+E
Sbjct: 121 SEVYLGGIPNNASEEDLRGFCEPVGEVTEVRILKGKDSAETKGYAFVTFRTKELASKAME 180
Query: 180 ELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
ELN+ E+KG+KIKCSA+Q KHRLFI NVPR W E+DM+K VT+IGPGV ++L KDPQN+
Sbjct: 181 ELNNAEIKGRKIKCSASQVKHRLFISNVPRTWEEEDMKKVVTEIGPGVNLVDLWKDPQNS 240
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVK 299
++NRGFAFIEYYNHACAEYSR+KMSNPKFKLD+NA TVSWADP+N ESSAASQVKA+Y+K
Sbjct: 241 SRNRGFAFIEYYNHACAEYSRKKMSNPKFKLDNNASTVSWADPKNVESSAASQVKAVYIK 300
Query: 300 NLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359
NLPK +TQD+L+ELF HGKITKVVIPPAK GQE R+GFVHFAERSSAMKALKNTEKYE
Sbjct: 301 NLPKYMTQDQLRELFGQHGKITKVVIPPAKAGQENCRFGFVHFAERSSAMKALKNTEKYE 360
Query: 360 IDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFA 419
IDG +L CSLAKPQAD+K SGGSNSQKSAL P+YPP +GYG++GGA GA AGF
Sbjct: 361 IDGHILGCSLAKPQADKKFSGGSNSQKSALLPSYPPWVGYGLLGGAPGAGYGA---AGFG 417
Query: 420 QPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGAGSSSSGGRR 479
QP+ YGRG G AM+PMLLPDGRIGYVLQQPG+Q + PP QPRS G S+SGGR
Sbjct: 418 QPLTYGRGLTSAGTAMMPMLLPDGRIGYVLQQPGMQPYTPPSQPRS-DRSGGGSTSGGRH 476
Query: 480 STDNGRGRSRYNPY 493
S D G GR YNPY
Sbjct: 477 SGDRGYGRRWYNPY 490
>gi|449444797|ref|XP_004140160.1| PREDICTED: uncharacterized protein LOC101218373 [Cucumis sativus]
Length = 784
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 286/384 (74%), Positives = 333/384 (86%), Gaps = 11/384 (2%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFC 140
+GI++Q DE DE KKHAELLALPPHGSEVY+GGIP D+S+DDLR FC
Sbjct: 366 NGINSQNETINDE----------DETKKHAELLALPPHGSEVYVGGIPQDSSEDDLRRFC 415
Query: 141 KSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
+SIGEVTEVR+M+ K+S E KG+AFVTFR+ ELAS+AI+ELN+ E KGKKIKCS++QAKH
Sbjct: 416 ESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQAKH 475
Query: 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 260
RLFIGNVPR+WGE+D++K VT+IGPGV ++ELVKD +N + NRGFAFI+YYNHACAEYSR
Sbjct: 476 RLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSR 535
Query: 261 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
QKM NPKFKLDDNAPTVSWADP+NA+SSAASQVKA+YVKNLPK++TQ++LK+LF HHGKI
Sbjct: 536 QKMMNPKFKLDDNAPTVSWADPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKI 595
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 380
TKVV+PPAK GQE++R GFVHF+ERSSAMKALKNTEKYE+DGQVL+CSLAKPQADQK SG
Sbjct: 596 TKVVLPPAKSGQEKNRIGFVHFSERSSAMKALKNTEKYELDGQVLECSLAKPQADQK-SG 654
Query: 381 GSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLL 440
GSNSQKS L P YPP +GYG VGGAYGA+ AGY +GF QP++YGRG P GMAM+PMLL
Sbjct: 655 GSNSQKSGLLPNYPPRVGYGFVGGAYGAVNAGYGGSGFGQPLIYGRGPTPAGMAMMPMLL 714
Query: 441 PDGRIGYVLQQPGVQQHNPPPQPR 464
PDGRIGYVLQQPG Q PPP PR
Sbjct: 715 PDGRIGYVLQQPGSQMLTPPPHPR 738
>gi|449518867|ref|XP_004166457.1| PREDICTED: uncharacterized protein LOC101228216 [Cucumis sativus]
Length = 828
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 286/384 (74%), Positives = 333/384 (86%), Gaps = 11/384 (2%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFC 140
+GI++Q DE DE KKHAELLALPPHGSEVY+GGIP D+S+DDLR FC
Sbjct: 410 NGINSQNETINDE----------DETKKHAELLALPPHGSEVYVGGIPQDSSEDDLRRFC 459
Query: 141 KSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
+SIGEVTEVR+M+ K+S E KG+AFVTFR+ ELAS+AI+ELN+ E KGKKIKCS++QAKH
Sbjct: 460 ESIGEVTEVRVMRSKESNENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSSSQAKH 519
Query: 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 260
RLFIGNVPR+WGE+D++K VT+IGPGV ++ELVKD +N + NRGFAFI+YYNHACAEYSR
Sbjct: 520 RLFIGNVPRSWGEEDLKKVVTEIGPGVTAVELVKDMKNTSNNRGFAFIDYYNHACAEYSR 579
Query: 261 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
QKM NPKFKLDDNAPTVSWADP+NA+SSAASQVKA+YVKNLPK++TQ++LK+LF HHGKI
Sbjct: 580 QKMMNPKFKLDDNAPTVSWADPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFDHHGKI 639
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 380
TKVV+PPAK GQE++R GFVHF+ERSSAMKALKNTEKYE+DGQVL+CSLAKPQADQK SG
Sbjct: 640 TKVVLPPAKSGQEKNRIGFVHFSERSSAMKALKNTEKYELDGQVLECSLAKPQADQK-SG 698
Query: 381 GSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLL 440
GSNSQKS L P YPP +GYG VGGAYGA+ AGY +GF QP++YGRG P GMAM+PMLL
Sbjct: 699 GSNSQKSGLLPNYPPRVGYGFVGGAYGAVNAGYGGSGFGQPLIYGRGPTPAGMAMMPMLL 758
Query: 441 PDGRIGYVLQQPGVQQHNPPPQPR 464
PDGRIGYVLQQPG Q PPP PR
Sbjct: 759 PDGRIGYVLQQPGSQMLTPPPHPR 782
>gi|224088555|ref|XP_002308472.1| predicted protein [Populus trichocarpa]
gi|222854448|gb|EEE91995.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 292/383 (76%), Positives = 340/383 (88%), Gaps = 8/383 (2%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFC 140
D D+ K DGDEE +DE +KH+ELLALPPHGSEVYLGGIP DAS++DL+ FC
Sbjct: 37 DEADSPKGSDGDEE--------EDEHRKHSELLALPPHGSEVYLGGIPPDASEEDLKEFC 88
Query: 141 KSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
+SIGEVTE+RIMKGKDS E+KGYAFVTFRTKELAS+AIEELN+ E KGKK+KCS +QA H
Sbjct: 89 ESIGEVTEIRIMKGKDSSESKGYAFVTFRTKELASKAIEELNNTEFKGKKVKCSTSQANH 148
Query: 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 260
RLFIGNVPRNWGE+DM+KAV K GPGV S+EL+KDPQN ++NRGFAFIEYYNHACAEYSR
Sbjct: 149 RLFIGNVPRNWGEEDMKKAVKKTGPGVNSVELLKDPQNPSRNRGFAFIEYYNHACAEYSR 208
Query: 261 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
+ MS+P+FKLDDNAPTVSWADP+NA SSAASQVKA+YVKNLP+DI QDRL++LF HHGK+
Sbjct: 209 KMMSSPEFKLDDNAPTVSWADPKNAGSSAASQVKAVYVKNLPEDINQDRLRQLFEHHGKV 268
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 380
TKVV+PPAKPG E+SR+GFVHFAERSSAMKALKNTEKY+IDGQVLDCSLAKPQAD K+SG
Sbjct: 269 TKVVLPPAKPGHEKSRFGFVHFAERSSAMKALKNTEKYKIDGQVLDCSLAKPQADLKSSG 328
Query: 381 GSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLL 440
G NSQKS+ + ++PP +GY +VG +YGALGAG+ AGFAQP++YGRG P GM+M+PMLL
Sbjct: 329 GPNSQKSSPHSSFPPRVGYSLVGSSYGALGAGFGAAGFAQPVIYGRGPTPAGMSMMPMLL 388
Query: 441 PDGRIGYVLQQPGVQQHNPPPQP 463
PDGRIGYVLQQPG+Q H+PPPQP
Sbjct: 389 PDGRIGYVLQQPGMQMHSPPPQP 411
>gi|296084906|emb|CBI28315.3| unnamed protein product [Vitis vinifera]
Length = 434
Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust.
Identities = 298/394 (75%), Positives = 339/394 (86%), Gaps = 8/394 (2%)
Query: 107 KKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFV 166
KKHAELLALPPHGSEVY+GGI DAS++DL+ FC+S+GEVTEVRIMKGKDSGE KG+AFV
Sbjct: 42 KKHAELLALPPHGSEVYVGGISQDASEEDLKSFCESVGEVTEVRIMKGKDSGENKGFAFV 101
Query: 167 TFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPG 226
TFR ELAS+AIEELN+ E KG+KIKCS +QAKHRLFIGNVPR+WGE+D++K VT+IGPG
Sbjct: 102 TFRNVELASKAIEELNNTEFKGRKIKCSTSQAKHRLFIGNVPRSWGEEDIKKVVTEIGPG 161
Query: 227 VISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE 286
V ++ELVKD +N++ NRGFAFI+YYNHACAEYSRQKM NPKFKLD+NAPTVSWADP+NA+
Sbjct: 162 VTAVELVKDMKNSSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLDNNAPTVSWADPKNAD 221
Query: 287 SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346
SS ASQVKA+YVKNLPK+ITQD+LK+LF HHGKITKVV+PPAK GQE+SR GFVHFAERS
Sbjct: 222 SSPASQVKAVYVKNLPKNITQDQLKQLFEHHGKITKVVLPPAKSGQEKSRIGFVHFAERS 281
Query: 347 SAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAY 406
SAMKALKNTEKYEIDGQVL+CSLAKPQADQK+ GGSNSQKS L +YPP +GYG VGGAY
Sbjct: 282 SAMKALKNTEKYEIDGQVLECSLAKPQADQKSVGGSNSQKSGLLSSYPPRVGYGFVGGAY 341
Query: 407 GALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQ---- 462
GALGAGY AGFAQP++YGRG P GMAM+PMLLPDGRIGYVLQQPG Q H PP
Sbjct: 342 GALGAGYGTAGFAQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGAQPHTPPSHQRSS 401
Query: 463 ---PRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 493
+G SSS GR + D G GR RY+PY
Sbjct: 402 GRGGSGSGSKSGGSSSRGRHNNDGGHGR-RYHPY 434
>gi|224104859|ref|XP_002313595.1| predicted protein [Populus trichocarpa]
gi|222850003|gb|EEE87550.1| predicted protein [Populus trichocarpa]
Length = 489
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 323/502 (64%), Positives = 396/502 (78%), Gaps = 22/502 (4%)
Query: 1 MPRTRGSTAAADNPDAPENPTEREKPIESEERVDLDEDNDHEEEVEEEVEYEEVEEEEEV 60
MP T+G+ +AA E EKP+E +E+VDLDED D EE ++EEVEYEEVEE E
Sbjct: 1 MPSTKGNGSAA------AEQAESEKPVEYDEKVDLDEDYDPEEMMDEEVEYEEVEEIVEE 54
Query: 61 EVEEEVEEEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGS 120
EVEEE E EEE E E+ D DA GDE + + +DE+KK+ ELLA PPHGS
Sbjct: 55 EVEEEEIIEEEEEVEVEEEDD-DDASNANAGDE----TKVEDEDEQKKYDELLARPPHGS 109
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EVY+GGIP+DAS++DLR FC+S+GEVTEVRIM+ KDS E +G+AFVTFR+ +LAS AI E
Sbjct: 110 EVYIGGIPNDASEEDLRDFCESVGEVTEVRIMREKDSSENRGFAFVTFRSVDLASTAIGE 169
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
LN+ E KGKKIKCS +QAKHRLF+ N+PR+WGED +RK V ++GPGV +++LVK+ ++N
Sbjct: 170 LNNTEFKGKKIKCSTSQAKHRLFLSNIPRSWGEDGLRKIVAEVGPGVTNVQLVKEKSSSN 229
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKN 300
NRG+AFIEYYN+ACAEYSRQKM +PKFKL DNAP VSWADP+NA+SSA+SQVKALYVKN
Sbjct: 230 -NRGYAFIEYYNNACAEYSRQKMMDPKFKLGDNAPAVSWADPKNADSSASSQVKALYVKN 288
Query: 301 LPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 360
LPK +TQD+LK+LF HGKITKVV+PPAK GQE++R GFVHFAERSSAMKALK+TEKYE+
Sbjct: 289 LPKTVTQDQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKDTEKYEL 348
Query: 361 DGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFA- 419
DGQ+++C+LAKPQ++QK +GGSN Q + L P YPP +GYGM+G AYGALGAGYV AGFA
Sbjct: 349 DGQLVECALAKPQSEQKAAGGSNLQNTGLLPGYPPGVGYGMMGNAYGALGAGYVTAGFAQ 408
Query: 420 QPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPP----QPRSGRGG----AG 471
QP++YG G +P GMAM+PMLLPDG+ GYVLQQPGVQ H+P RSG GG G
Sbjct: 409 QPLIYGSGPSPAGMAMMPMLLPDGQFGYVLQQPGVQLHSPTSYQRNDSRSGSGGRGNKMG 468
Query: 472 SSSSGGRRSTDNGRGRSRYNPY 493
SS+ GR S D+G G+ R+ PY
Sbjct: 469 GSSNRGRHSNDSGHGQ-RFRPY 489
>gi|224131824|ref|XP_002328117.1| predicted protein [Populus trichocarpa]
gi|222837632|gb|EEE75997.1| predicted protein [Populus trichocarpa]
Length = 419
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 271/420 (64%), Positives = 346/420 (82%), Gaps = 12/420 (2%)
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFC 140
+G D Q + GDE A+ + +DEKKKHAELLA PPHGSEVY+GG+P+DAS++DL+ FC
Sbjct: 5 NGGDIQSSHQGDE----AKVEDEDEKKKHAELLARPPHGSEVYIGGVPNDASEEDLKDFC 60
Query: 141 KSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
+S+GEVTEVR+MKGKDS + KG+AFVTFR+ +LA++AI ELN+ E KGK+IKCS +QAKH
Sbjct: 61 ESVGEVTEVRMMKGKDSSDNKGFAFVTFRSVDLATKAIGELNNTEFKGKRIKCSTSQAKH 120
Query: 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 260
RLF+ N+PR+WGE+D+ K V ++GPG +++LVK ++++ NRG+AF+EYYN+ACAEYSR
Sbjct: 121 RLFLSNIPRSWGEEDLSKFVAEVGPGTTNVQLVKVSESSSNNRGYAFVEYYNNACAEYSR 180
Query: 261 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
QKM +PKFKL DNAP+VSWADP+NA+SS +SQVKA+YVKNLPK +TQD+LK+LF HGKI
Sbjct: 181 QKMIDPKFKLGDNAPSVSWADPKNADSSTSSQVKAIYVKNLPKTVTQDQLKKLFERHGKI 240
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 380
TKVV+PPAK GQE++R GFVHFAERSSAMKALK+TEKYE++GQ ++C+LAKPQ++QK +G
Sbjct: 241 TKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKDTEKYELNGQSVECALAKPQSEQKPAG 300
Query: 381 GSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLL 440
GSN Q++ L P YPP +GYGM+G AYGALGAGYV GF QP++YG G AP GMAM+PMLL
Sbjct: 301 GSNLQRAGLLPAYPPGVGYGMMGSAYGALGAGYVATGFTQPLIYGSGPAPAGMAMMPMLL 360
Query: 441 PDGRIGYVLQQPGVQQHNPPPQPRS-GRGGAG------SSSSGGRRSTDNGRGRSRYNPY 493
PDG+ GYVLQQPGVQ H+P R+ R G+G SSS GR+ +D GR R+ PY
Sbjct: 361 PDGQFGYVLQQPGVQLHSPTSYQRNDSRSGSGRGNKMVGSSSRGRQRSDASHGR-RFRPY 419
>gi|297740122|emb|CBI30304.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 290/391 (74%), Positives = 334/391 (85%), Gaps = 4/391 (1%)
Query: 103 DDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKG 162
D+E ++HAELLALPPHGSEVYLGGIP++AS++DLR FC+ +GEVTEVRI+KGKDS E KG
Sbjct: 75 DNENRRHAELLALPPHGSEVYLGGIPNNASEEDLRGFCEPVGEVTEVRILKGKDSAETKG 134
Query: 163 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTK 222
YAFVTFRTKELAS+A+EELN+ E+KG+KIKCSA+Q KHRLFI NVPR W E+DM+K VT+
Sbjct: 135 YAFVTFRTKELASKAMEELNNAEIKGRKIKCSASQVKHRLFISNVPRTWEEEDMKKVVTE 194
Query: 223 IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP 282
IGPGV ++L KDPQN+++NRGFAFIEYYNHACAEYSR+KMSNPKFKLD+NA TVSWADP
Sbjct: 195 IGPGVNLVDLWKDPQNSSRNRGFAFIEYYNHACAEYSRKKMSNPKFKLDNNASTVSWADP 254
Query: 283 RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHF 342
+N ESSAASQVKA+Y+KNLPK +TQD+L+ELF HGKITKVVIPPAK GQE R+GFVHF
Sbjct: 255 KNVESSAASQVKAVYIKNLPKYMTQDQLRELFGQHGKITKVVIPPAKAGQENCRFGFVHF 314
Query: 343 AERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMV 402
AERSSAMKALKNTEKYEIDG +L CSLAKPQAD+K SGGSNSQKSAL P+YPP +GYG++
Sbjct: 315 AERSSAMKALKNTEKYEIDGHILGCSLAKPQADKKFSGGSNSQKSALLPSYPPWVGYGLL 374
Query: 403 GGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQ 462
GGA GA AGF QP+ YGRG G AM+PMLLPDGRIGYVLQQPG+Q + PP Q
Sbjct: 375 GGAPGAGYGA---AGFGQPLTYGRGLTSAGTAMMPMLLPDGRIGYVLQQPGMQPYTPPSQ 431
Query: 463 PRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 493
PRS G S+SGGR S D G GR YNPY
Sbjct: 432 PRS-DRSGGGSTSGGRHSGDRGYGRRWYNPY 461
>gi|224138490|ref|XP_002322827.1| predicted protein [Populus trichocarpa]
gi|222867457|gb|EEF04588.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 317/435 (72%), Positives = 363/435 (83%), Gaps = 17/435 (3%)
Query: 24 EKPIESEERVDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGI 83
EK ++ EE+VDLD DN+ EE +EEEVEYEEVEEEEEVE EE EE EEEE E+ D
Sbjct: 1 EKSVKPEEQVDLDGDNEAEETMEEEVEYEEVEEEEEVEEIEEEVEEEVEEEEIEEAADEA 60
Query: 84 DAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
D++K DG+EE+ DE++KHAELLALPPHGSEVYLGGIP DAS+ DL+ FC+SI
Sbjct: 61 DSKKGSDGEEEI--------DEQRKHAELLALPPHGSEVYLGGIPPDASEGDLKEFCESI 112
Query: 144 GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF 203
GEVTEVRIMKGKDS E+KGYAFV+FRTKELAS+AIEELN+ E KGKK+KCS +QA HRLF
Sbjct: 113 GEVTEVRIMKGKDSSESKGYAFVSFRTKELASKAIEELNNTEFKGKKVKCSTSQANHRLF 172
Query: 204 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 263
IGNVPRNWGE++M+KAV KIGPGV S+EL+KDPQN ++NRGFAFIEYYNHACAEYSR+KM
Sbjct: 173 IGNVPRNWGEENMKKAVKKIGPGVNSVELLKDPQNPSRNRGFAFIEYYNHACAEYSRKKM 232
Query: 264 SNPKFKLDDNAPTVSWADPRNAESSAASQ----VKALYVKNLPKDITQDRLKELFAHHGK 319
SNP+FKLDDNAPTVSWADP+NA SSAASQ VKA+YVKNLP+DITQD L++LF HHGK
Sbjct: 233 SNPEFKLDDNAPTVSWADPKNAGSSAASQVCCSVKAVYVKNLPEDITQDGLRQLFEHHGK 292
Query: 320 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 379
+TKVV+PPAKPG E+SR+GFVHFAERSSAMKALKNTEKYEIDG VLDCSLAKP DQK S
Sbjct: 293 VTKVVLPPAKPGHEKSRFGFVHFAERSSAMKALKNTEKYEIDGHVLDCSLAKPHTDQKPS 352
Query: 380 GGSNSQKSALNPTYPPHLGYGM-----VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMA 434
GG NSQ S+L +PP LGYG+ G G GAG+ AGF QP++YGRG P GMA
Sbjct: 353 GGPNSQNSSLYSNFPPQLGYGLAGGTYGGFGAGFGGAGFGAAGFTQPVIYGRGPTPAGMA 412
Query: 435 MLPMLLPDGRIGYVL 449
M+PMLLPDGRIGYVL
Sbjct: 413 MMPMLLPDGRIGYVL 427
>gi|356542760|ref|XP_003539833.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Glycine
max]
Length = 509
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 286/420 (68%), Positives = 338/420 (80%), Gaps = 17/420 (4%)
Query: 84 DAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
DA +++ DE A+ + +DEK+KHAELL+LPPHGSEVY+GGIPH ASD+DL+ C+ I
Sbjct: 97 DAMQNHSSDE----AKVEDEDEKRKHAELLSLPPHGSEVYIGGIPH-ASDEDLKSLCERI 151
Query: 144 GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF 203
GEV EVRIMKGKDS E KG+ FVTF + ELAS+AIEELN+ E GKKIKCS +QAKHRLF
Sbjct: 152 GEVAEVRIMKGKDSSENKGFGFVTFTSVELASKAIEELNNTEFMGKKIKCSKSQAKHRLF 211
Query: 204 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 263
IGNVPR+WG +D++K VT+IGPGV +ELVKD +N N NRGFAFI+YYNHACAEYSRQKM
Sbjct: 212 IGNVPRSWGVEDLKKIVTEIGPGVTGVELVKDMKNTNNNRGFAFIDYYNHACAEYSRQKM 271
Query: 264 SNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKV 323
+P FKL +NAPTVSWADP+NAESSAASQVKA+YVKNLPK++TQ++LK+LF HGKITKV
Sbjct: 272 MSPTFKLGENAPTVSWADPKNAESSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKV 331
Query: 324 VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSN 383
V+PPAK GQE++R GFVHFAERS+AMKALKNTE+YE++GQ+L+CSLAKPQADQK SGGSN
Sbjct: 332 VLPPAKSGQEKNRIGFVHFAERSNAMKALKNTERYELEGQLLECSLAKPQADQK-SGGSN 390
Query: 384 SQK--SALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLP 441
+QK L P+YPPH+GYG+VGGAYGALGAGY G AQP++YG G P GMAM+PMLL
Sbjct: 391 TQKPGPGLLPSYPPHVGYGLVGGAYGALGAGYAAPGLAQPLLYGGGQTPAGMAMMPMLLA 450
Query: 442 DGRIGYVLQQPGVQQHNPP--------PQPRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 493
DGRIGYVLQQPG+Q PP SSS GR + D G GR RY PY
Sbjct: 451 DGRIGYVLQQPGMQPQAPPSHHRGGRGGGGSGSGNRNAGSSSKGRHNNDGGHGR-RYRPY 509
>gi|357511099|ref|XP_003625838.1| RNA-binding protein [Medicago truncatula]
gi|355500853|gb|AES82056.1| RNA-binding protein [Medicago truncatula]
Length = 477
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 339/500 (67%), Positives = 395/500 (79%), Gaps = 30/500 (6%)
Query: 1 MPRTRGSTAAADNPDAPENPTEREKPIESEERVDLDEDNDHEEEVEEEVEYEEVEEEEEV 60
MP TR A A N ++P +E EKP +S E+VDLD DND EE EEEVEYEEVE EEEV
Sbjct: 1 MPGTRQKDATARNSESPGGNSEPEKPTDSGEQVDLDGDNDQEESSEEEVEYEEVEVEEEV 60
Query: 61 EVEEEVEEEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGS 120
E EEE EEE E EEE++ + DEE D+ D KKKHAELLALPPHGS
Sbjct: 61 EEEEEEEEEEEVEEESKPL------------DEE------DEAD-KKKHAELLALPPHGS 101
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EVY+GGIPH+ S+ DLR FC+S+GEV EVR+MKGK EAKGYAFVTF+TKELAS+A++E
Sbjct: 102 EVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGK---EAKGYAFVTFKTKELASKALKE 158
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
LN+ E KG+KIKCS +Q KHRLFIG+VP+ W +DM+K V K+GPGVIS+EL+KDPQ+++
Sbjct: 159 LNNSEFKGRKIKCSPSQVKHRLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSS 218
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKN 300
+NRGFAFIEY+NHACAEYSRQKMSN FKLD+N VSWADPRN+ESS++SQVKA+YVKN
Sbjct: 219 RNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSESSSSSQVKAVYVKN 278
Query: 301 LPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 360
LP++ITQ+RLKELF HHGKITKV +PPAK GQE+SRYGFVHFA+RSSAMKALKNTEKYEI
Sbjct: 279 LPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEI 338
Query: 361 DGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQ 420
+GQ L+CSLAKPQADQK+SG SNS SA+ P YPP LGYGMVGG YGA+GAGY AGFA
Sbjct: 339 NGQTLECSLAKPQADQKSSGASNSFNSAVLPAYPPPLGYGMVGGGYGAVGAGYGAAGFAP 398
Query: 421 PMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGV-----QQHNPPPQPRSGRGGAGSSSS 475
P++YG GA P GM M+PMLLPDGRI YVLQQPG+ QQH P P R +G SSS
Sbjct: 399 PLMYGPGATPAGMTMMPMLLPDGRIAYVLQQPGLQQPSFQQHAPSPVSRH-GRSSGVSSS 457
Query: 476 GGRRSTDNGRGR--SRYNPY 493
G +RS DN R R RYNPY
Sbjct: 458 GEKRSNDNSRNRGHCRYNPY 477
>gi|255565651|ref|XP_002523815.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223536903|gb|EEF38541.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 489
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 312/468 (66%), Positives = 378/468 (80%), Gaps = 16/468 (3%)
Query: 1 MPRTRGSTAAADNPDAPENPTEREKPIESEERVDLDEDND---HEEEVEEEVEYEEVEEE 57
MPR +G+ +AA P PEN +ES+E+VDLDED+D +EEVE E EE+EEE
Sbjct: 1 MPREKGNASAAAEPVEPENS------VESDEKVDLDEDDDPEVMDEEVEYEEVEEEIEEE 54
Query: 58 EEVEVEEEVEEEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPP 117
E VEVEEE E E EEEEE + DG AQK D ++E+K HAELLA PP
Sbjct: 55 ELVEVEEEEEVEEEEEEENANNGDGSSAQKR----IIGDEIIIDDENERKNHAELLARPP 110
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
HGSEVY+GGIPHDAS++DLR FC+S+GEVTEVR+MKGKDS E K +AFVTFR+ +LAS+A
Sbjct: 111 HGSEVYIGGIPHDASEEDLRGFCESVGEVTEVRLMKGKDSNENKRFAFVTFRSVDLASKA 170
Query: 178 IEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
I+ELN+ E KGK+IKCS AQAK+RLF+GN+PR+W E+D+RK V ++GPGV +++LVKD +
Sbjct: 171 IDELNNTEFKGKRIKCSTAQAKYRLFLGNIPRSWKEEDLRKVVAEVGPGVTAVQLVKDMK 230
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALY 297
+N N+GFAFI+YYN ACAEYSRQKM NP FKL DNAPTVSWA+P+NA+SSA+SQVKA+Y
Sbjct: 231 TSN-NKGFAFIDYYNTACAEYSRQKMVNPDFKLGDNAPTVSWAEPKNADSSASSQVKAIY 289
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357
VKNLPK++TQD+LK+LF HHGKITKVV+PPAKPGQE++R GFVHFAERSSAMKALKNTE+
Sbjct: 290 VKNLPKNVTQDQLKKLFEHHGKITKVVLPPAKPGQEKNRIGFVHFAERSSAMKALKNTER 349
Query: 358 YEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAG 417
YE+DGQV++CSLAKPQADQK+ G SN Q L P+YPP GYG++GGA+GALGAGY
Sbjct: 350 YELDGQVVECSLAKPQADQKSVGVSNLQNPGLLPSYPPGGGYGLIGGAFGALGAGY--GA 407
Query: 418 FAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRS 465
AQP++YGRG P GMAM+PMLLPDGRIGYVLQQPGVQ H PP R+
Sbjct: 408 VAQPLIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGVQPHTPPSHHRN 455
>gi|356503817|ref|XP_003520699.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Glycine max]
Length = 464
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 333/494 (67%), Positives = 388/494 (78%), Gaps = 31/494 (6%)
Query: 1 MPRTRGSTAAADNPDAPENPTEREKPIESEERVDLDEDNDHEEEVEEEVEYEEVEEEEEV 60
MP T+ + NPD+PE +E EKP +S+ERVD D DND EE +EEEVEYEEVEEEEE
Sbjct: 1 MPGTK-QRDTSQNPDSPEGNSEPEKPTDSDERVDFDGDNDQEETMEEEVEYEEVEEEEEE 59
Query: 61 EVEEEVEEEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGS 120
E EEE EEE EE + ++ + +VA++ + EKKKHAELLALPPHGS
Sbjct: 60 EEEEEEEEEEEETKLSD----------------KTRVADTKDEVEKKKHAELLALPPHGS 103
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EVY+GGIP + S++DLR FC+S+GEV+EVRIMKGK+SGEAKGYAFVTF TKELAS+AIEE
Sbjct: 104 EVYIGGIPQNVSEEDLRVFCQSVGEVSEVRIMKGKESGEAKGYAFVTFMTKELASKAIEE 163
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
LN+ E KGK+IKCS +Q KH+LFIGNVP+ W E DM+K V +IGPGVI +EL+KDPQN++
Sbjct: 164 LNNSEFKGKRIKCSTSQVKHKLFIGNVPKYWTEGDMKKVVAEIGPGVICVELLKDPQNSS 223
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKN 300
+NRG+AFIEYYNHACAEYSRQKMSN FKL NAPTVSWADPRN+ESSA S VK++YVKN
Sbjct: 224 RNRGYAFIEYYNHACAEYSRQKMSNSNFKLGSNAPTVSWADPRNSESSAISLVKSVYVKN 283
Query: 301 LPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 360
LP++ITQDRLKELF HHGKITKVV+P AK GQE+SR+GFVHFAERSSAMKALKNTEKYEI
Sbjct: 284 LPENITQDRLKELFEHHGKITKVVLPSAKSGQEKSRFGFVHFAERSSAMKALKNTEKYEI 343
Query: 361 DGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQ 420
DGQ+L+CSLAKPQA NSQK AL PTYPPHLGYGMVGGA GA AGFAQ
Sbjct: 344 DGQLLECSLAKPQA--------NSQKPALLPTYPPHLGYGMVGGAIGAGYGA---AGFAQ 392
Query: 421 PMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGAGSSSSGGRRS 480
P++YG G PGGMAM+PM+L DGRI Y++QQPG QQ P P R GR G SSS G +
Sbjct: 393 PLMYGPGPTPGGMAMMPMMLSDGRIAYIVQQPGFQQ--PAPVSRHGRSGGSSSSGGKCSN 450
Query: 481 TDN-GRGRSRYNPY 493
DN RG RY+PY
Sbjct: 451 DDNRNRGHGRYHPY 464
>gi|356539254|ref|XP_003538114.1| PREDICTED: APOBEC1 complementation factor-like [Glycine max]
Length = 505
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 292/420 (69%), Positives = 343/420 (81%), Gaps = 17/420 (4%)
Query: 84 DAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
DA +++ DE + + +DEKKKHAELL++PPHGSEVY+GGIPH ASD+DL+ C+ I
Sbjct: 93 DAMQNHSSDE----TKVEDEDEKKKHAELLSIPPHGSEVYIGGIPH-ASDEDLKSLCERI 147
Query: 144 GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF 203
GEV EVRIMKGKDS E KG+ FVTFR+ ELAS+AIEELN+ E GKKIKCS +QAKHRLF
Sbjct: 148 GEVAEVRIMKGKDSSENKGFGFVTFRSVELASKAIEELNNTEFMGKKIKCSKSQAKHRLF 207
Query: 204 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 263
IGNVPR+WG +D++K VT+IGPGV +ELVKD +N N NRGFAFI+YYNHACAEYSRQKM
Sbjct: 208 IGNVPRSWGVEDLKKIVTEIGPGVTGVELVKDMKNTNNNRGFAFIDYYNHACAEYSRQKM 267
Query: 264 SNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKV 323
+P FKL +NAPTVSWADP+NAESSAASQVKA+YVKNLPK++TQ++LK+LF HGKITKV
Sbjct: 268 MSPTFKLGENAPTVSWADPKNAESSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKV 327
Query: 324 VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSN 383
V+PPAK GQE++R GFVHFAERS+AMKALKNTE+YE++GQ+L CSLAKPQADQK SGGSN
Sbjct: 328 VLPPAKSGQEKNRIGFVHFAERSNAMKALKNTERYELEGQLLQCSLAKPQADQK-SGGSN 386
Query: 384 SQK--SALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLP 441
+QK L P+YPPH+GYG+VGGAYG LGAGY G AQPM+YG G P GMA++PMLL
Sbjct: 387 TQKPGPGLLPSYPPHVGYGLVGGAYGGLGAGYAAPGLAQPMLYGGGQTPSGMAIMPMLLA 446
Query: 442 DGRIGYVLQQPGVQQHNPPPQPRSGRGGAGS--------SSSGGRRSTDNGRGRSRYNPY 493
DGRIGYVLQQPG+Q PP R GRGG GS SSS GR + D G GR RY PY
Sbjct: 447 DGRIGYVLQQPGMQPQAPPSHHRGGRGGGGSGSGNRNVGSSSKGRHNNDGGHGR-RYRPY 505
>gi|356542762|ref|XP_003539834.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Glycine
max]
Length = 501
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 281/420 (66%), Positives = 332/420 (79%), Gaps = 25/420 (5%)
Query: 84 DAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
DA +++ DE A+ + +DEK+KHAELL+LPPHGSEVY+GGIPH ASD+DL+ C+ I
Sbjct: 97 DAMQNHSSDE----AKVEDEDEKRKHAELLSLPPHGSEVYIGGIPH-ASDEDLKSLCERI 151
Query: 144 GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF 203
GEV EVRIMKGKDS E KG+ FVTF + ELAS+AIEELN+ E GKKIKCS +QAKHRLF
Sbjct: 152 GEVAEVRIMKGKDSSENKGFGFVTFTSVELASKAIEELNNTEFMGKKIKCSKSQAKHRLF 211
Query: 204 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 263
IGNVPR+WG +D++K VT+IGPG D +N N NRGFAFI+YYNHACAEYSRQKM
Sbjct: 212 IGNVPRSWGVEDLKKIVTEIGPG--------DMKNTNNNRGFAFIDYYNHACAEYSRQKM 263
Query: 264 SNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKV 323
+P FKL +NAPTVSWADP+NAESSAASQVKA+YVKNLPK++TQ++LK+LF HGKITKV
Sbjct: 264 MSPTFKLGENAPTVSWADPKNAESSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKV 323
Query: 324 VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSN 383
V+PPAK GQE++R GFVHFAERS+AMKALKNTE+YE++GQ+L+CSLAKPQADQK SGGSN
Sbjct: 324 VLPPAKSGQEKNRIGFVHFAERSNAMKALKNTERYELEGQLLECSLAKPQADQK-SGGSN 382
Query: 384 SQK--SALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLP 441
+QK L P+YPPH+GYG+VGGAYGALGAGY G AQP++YG G P GMAM+PMLL
Sbjct: 383 TQKPGPGLLPSYPPHVGYGLVGGAYGALGAGYAAPGLAQPLLYGGGQTPAGMAMMPMLLA 442
Query: 442 DGRIGYVLQQPGVQQHNPP--------PQPRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 493
DGRIGYVLQQPG+Q PP SSS GR + D G GR RY PY
Sbjct: 443 DGRIGYVLQQPGMQPQAPPSHHRGGRGGGGSGSGNRNAGSSSKGRHNNDGGHGR-RYRPY 501
>gi|15231284|ref|NP_190834.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79314840|ref|NP_001030849.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|7669940|emb|CAB89227.1| putative RNA binding protein [Arabidopsis thaliana]
gi|51970792|dbj|BAD44088.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|51971921|dbj|BAD44625.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|115646718|gb|ABJ17093.1| At3g52660 [Arabidopsis thaliana]
gi|332645455|gb|AEE78976.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332645456|gb|AEE78977.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 471
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 268/395 (67%), Positives = 320/395 (81%), Gaps = 8/395 (2%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
KK+H ELLALPPHGSEVYLGGIP DA++ DL+ FC SIGEVTEVRIM+ KDSG+ KGYAF
Sbjct: 78 KKRHVELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAF 137
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGP 225
VTFR+K+LA++AI+ LN+ + +GK+IKCS QAKHRLF+GNVPRNW E D++KA +IGP
Sbjct: 138 VTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIGP 197
Query: 226 GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWAD--PR 283
GV +EL K+PQN +NRGFAFIEYYNHACAEYS+QKMSNP FKLDDNAPTVSWA+
Sbjct: 198 GVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSG 257
Query: 284 NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S+ASQVKALY+KNLP+DITQ+RLK LF HHGKI KVVIPPAKPG+E SRYGFVH+A
Sbjct: 258 GGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYA 317
Query: 344 ERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS--NSQKSALNPTYPPHLGYGM 401
ER+S M+ALKNTE+YEIDG +LDC+LAKPQADQKT+ + N QKS L P YPP L YGM
Sbjct: 318 ERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKTNTNTVQNVQKSQLQPNYPPLLSYGM 377
Query: 402 VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPP 461
+GALG G+ + ++QP+++ G A GGM+M+P++LPDGRIGYVLQQPG+ PP
Sbjct: 378 APSPFGALG-GFGASAYSQPLMHAGGHAAGGMSMMPIMLPDGRIGYVLQQPGLAAMPQPP 436
Query: 462 QPRS---GRGGAGSSSSGGRRSTDNGRGRSRYNPY 493
S G SSSSG +RS+DNGRGRSRYNPY
Sbjct: 437 PRHSPPYRGGSGSSSSSGSKRSSDNGRGRSRYNPY 471
>gi|297816558|ref|XP_002876162.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297322000|gb|EFH52421.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 470
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 266/395 (67%), Positives = 317/395 (80%), Gaps = 8/395 (2%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
KK+H ELLALP HGSEVYLGGIP DA++ DL+ FC+SIGEVTEVRIM+ K+SG+ KGYAF
Sbjct: 77 KKRHVELLALPSHGSEVYLGGIPTDATEGDLKGFCQSIGEVTEVRIMREKESGDGKGYAF 136
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGP 225
VTFR K+LAS+AI+ LNS E +GK+IKCS QAKHRLF+GNVPRNW E D++KA +IGP
Sbjct: 137 VTFRNKDLASKAIDTLNSTEFRGKRIKCSTTQAKHRLFLGNVPRNWTESDIKKAANRIGP 196
Query: 226 GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWAD--PR 283
GV +EL K+PQN +NRGFAFIEY+NHACAEYS+QKMSNP FKLDDNAPTVSWA+
Sbjct: 197 GVQIVELPKEPQNMGRNRGFAFIEYHNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSG 256
Query: 284 NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S+ASQVKALY+KNLP+DITQ+RLK LF HHGKI KVVIPPAKPG+E SRYGFVH+A
Sbjct: 257 GGGDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYA 316
Query: 344 ERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS--NSQKSALNPTYPPHLGYGM 401
ER+S M+ALKNTE+YEIDG +LDC+LAKPQADQK + + N QKS L P YPP L YGM
Sbjct: 317 ERTSVMRALKNTERYEIDGHMLDCTLAKPQADQKANANTVQNVQKSQLQPNYPPLLSYGM 376
Query: 402 VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPP 461
+GALG G+ + ++QP+++ G A GGM+M+P++LPDGRIGYVLQQPG+ PP
Sbjct: 377 APSPFGALG-GFGASAYSQPLMHAGGHAAGGMSMMPIMLPDGRIGYVLQQPGLAAMPQPP 435
Query: 462 QPRS---GRGGAGSSSSGGRRSTDNGRGRSRYNPY 493
S G SSSS +RS+DNGRGRSRYNPY
Sbjct: 436 PRPSPPYRGGSGSSSSSSSKRSSDNGRGRSRYNPY 470
>gi|124360410|gb|ABD33357.2| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 742
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 236/357 (66%), Positives = 292/357 (81%), Gaps = 1/357 (0%)
Query: 101 DKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEA 160
D DDEKKKHAELL+LP H SEVY+GGIP DA +DL+ FC+ IGEV +VRI KGKD+ E
Sbjct: 328 DDDDEKKKHAELLSLPHHKSEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASEN 387
Query: 161 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 220
+G+AFVT+R+ ELAS+AI+ELN+ E K KIKCS +QAK RLFIGN+PR+WGE D++K V
Sbjct: 388 RGFAFVTYRSIELASKAIKELNNTEFKAGKIKCSKSQAKSRLFIGNIPRSWGEKDLKKVV 447
Query: 221 TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA 280
+ IGPGV ++EL+KD +N + NRG+AFI+Y+N+ CAEYSRQKM++P FKL DN PTV+WA
Sbjct: 448 SDIGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLGDNFPTVNWA 507
Query: 281 DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFV 340
+P+NA+SSA+SQVK +YVKNLPK++T+++LK+LF HHGKITKVV+PP KPGQE++R GFV
Sbjct: 508 EPKNADSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFV 567
Query: 341 HFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYG 400
HFAERS+AMKALKNTEKY +DGQ+L+CSLAK QAD K + SN Q P YPPH+GYG
Sbjct: 568 HFAERSNAMKALKNTEKYVLDGQILECSLAKQQADPK-AVVSNIQTQGSLPRYPPHVGYG 626
Query: 401 MVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQH 457
+ G YG LGAGY G AQP YG G PGG+AM+P LL D RI YVLQQPG+Q H
Sbjct: 627 LDGNPYGVLGAGYGAPGLAQPFTYGLGQTPGGIAMMPKLLVDRRIRYVLQQPGLQPH 683
>gi|357501821|ref|XP_003621199.1| RNA-binding protein [Medicago truncatula]
gi|355496214|gb|AES77417.1| RNA-binding protein [Medicago truncatula]
Length = 782
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 236/357 (66%), Positives = 292/357 (81%), Gaps = 1/357 (0%)
Query: 101 DKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEA 160
D DDEKKKHAELL+LP H SEVY+GGIP DA +DL+ FC+ IGEV +VRI KGKD+ E
Sbjct: 363 DDDDEKKKHAELLSLPHHKSEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASEN 422
Query: 161 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV 220
+G+AFVT+R+ ELAS+AI+ELN+ E K KIKCS +QAK RLFIGN+PR+WGE D++K V
Sbjct: 423 RGFAFVTYRSIELASKAIKELNNTEFKAGKIKCSKSQAKSRLFIGNIPRSWGEKDLKKVV 482
Query: 221 TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA 280
+ IGPGV ++EL+KD +N + NRG+AFI+Y+N+ CAEYSRQKM++P FKL DN PTV+WA
Sbjct: 483 SDIGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLGDNFPTVNWA 542
Query: 281 DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFV 340
+P+NA+SSA+SQVK +YVKNLPK++T+++LK+LF HHGKITKVV+PP KPGQE++R GFV
Sbjct: 543 EPKNADSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFV 602
Query: 341 HFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYG 400
HFAERS+AMKALKNTEKY +DGQ+L+CSLAK QAD K + SN Q P YPPH+GYG
Sbjct: 603 HFAERSNAMKALKNTEKYVLDGQILECSLAKQQADPK-AVVSNIQTQGSLPRYPPHVGYG 661
Query: 401 MVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQH 457
+ G YG LGAGY G AQP YG G PGG+AM+P LL D RI YVLQQPG+Q H
Sbjct: 662 LDGNPYGVLGAGYGAPGLAQPFTYGLGQTPGGIAMMPKLLVDRRIRYVLQQPGLQPH 718
>gi|225453602|ref|XP_002264834.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Vitis
vinifera]
gi|296088998|emb|CBI38701.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 267/477 (55%), Positives = 353/477 (74%), Gaps = 17/477 (3%)
Query: 28 ESEERVDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEE---ETEDVVDGID 84
E E+RVDLD+DN + EE++++VE E++E+ E +E VEEE E+ + ED + +D
Sbjct: 6 EVEDRVDLDDDN-YMEEMDDDVE-EQIEDGVEGGGDENVEEEYEDSKAGGSGEDQLLEVD 63
Query: 85 AQKHYD---GDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCK 141
+ + DEE A D +DEK+KHA+LLALPPHGSE+++GG+P +A ++DLR C+
Sbjct: 64 ESRIANEPLKDEENPTASVD-EDEKEKHAQLLALPPHGSEIFIGGLPREALEEDLRDLCE 122
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR 201
IGE EVR+MK +DSGE+KGYAF++F+TKE+A +AIEEL+S E KG+ I+CS +++KHR
Sbjct: 123 PIGEALEVRLMKNRDSGESKGYAFISFKTKEIAQKAIEELHSKEFKGRTIRCSLSESKHR 182
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
LFIGNVP++W +D+ RK + IGPG +IEL+KDPQN ++NRGFAF+EYYN+ACA+Y RQ
Sbjct: 183 LFIGNVPKSWTDDEFRKVIEDIGPGAENIELIKDPQNPSRNRGFAFVEYYNNACADYGRQ 242
Query: 262 KMSNPKFKLDDNAPTVSWADPRN-AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
KMS+ FKLD N PTVSWADP++ ++ SAA+QVKALYVKN+P++ T ++LKELF HG++
Sbjct: 243 KMSSSNFKLDGNTPTVSWADPKSTSDHSAAAQVKALYVKNIPENTTTEQLKELFQRHGEV 302
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 380
TKVV+PPAK GQ + +GF+HFAERSSA+KA+K+TEK+EIDGQ LD SLAKPQ+D+K G
Sbjct: 303 TKVVMPPAKSGQSKRDFGFIHFAERSSALKAVKDTEKHEIDGQALDVSLAKPQSDKKFEG 362
Query: 381 GSNSQKSALNPTYPPHLGYGMVGG-AYGALGAGY-VPAGFAQPMVYGRGAAPGGMAMLPM 438
S+ +P + PH GYG GG YG+LG GY V A F QP++YGRG P GM M+PM
Sbjct: 363 --VHPYSSGHPNFLPHPGYGGFGGNPYGSLGPGYGVSAPFQQPVIYGRGPMPAGMHMVPM 420
Query: 439 LLPDGRIGYVLQQPGVQQ--HNPPPQPRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 493
+LPDGRIGYVLQQPGVQ P RS G S D+ R R RY PY
Sbjct: 421 VLPDGRIGYVLQQPGVQMPPPRPRRNERSNGSSGQQGRGGSSGSGDDNRSR-RYRPY 476
>gi|356573261|ref|XP_003554781.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine
max]
Length = 483
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 269/485 (55%), Positives = 354/485 (72%), Gaps = 26/485 (5%)
Query: 28 ESEERVDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVV------D 81
E +ERVDLDE+N + EE++++VE E+++++ VEEE E EE+E ED D
Sbjct: 6 EIDERVDLDEEN-YMEEMDDDVE-EQIDDDGVDGVEEENAEGSFEEDEYEDSAAEAGGKD 63
Query: 82 GIDAQKHYD-----GDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDL 136
+ + D GD+E K++ D +DEK+KH ELLALPPHGSEV++GG+P D +DDL
Sbjct: 64 QLPEAEKSDIATEFGDDEQKLSFID-EDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDL 122
Query: 137 RHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAA 196
R C+ +G++ EVR+MK +D+GE KGYAFV F+TKE+A +AIEE++S E KGK ++CS +
Sbjct: 123 RELCEPMGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQKAIEEIHSKEFKGKTLRCSLS 182
Query: 197 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 256
+ KHRLFIGNVP+ W EDD RK V +GPGV +IEL+KDPQN ++NRGFAF+ YYN+ACA
Sbjct: 183 ETKHRLFIGNVPKTWTEDDFRKVVEGVGPGVETIELIKDPQNPSRNRGFAFVLYYNNACA 242
Query: 257 EYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFA 315
+YSRQKM++ FKLD N PTV+WADP+N+ + SA+SQVKALYVKN+P+++T ++LKELF
Sbjct: 243 DYSRQKMASSSFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFR 302
Query: 316 HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375
HG++TKVV+PP K G +R +GF+H+AERSSA+KA+K+TEKYEIDGQ+L+ LAKPQAD
Sbjct: 303 RHGEVTKVVMPPGKAGGKRD-FGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLAKPQAD 361
Query: 376 QKTSGGSNSQKSALNPTYPPHLGYG-MVGGAYGALGAGY-VPAGFAQPMVYGRGAAPGGM 433
+K GG + L+P + PH YG G YG+LGAGY V AG+ QPM+YGRG P GM
Sbjct: 362 KKPDGGY-AYNPGLHPNHIPHPAYGNFSGNPYGSLGAGYGVAAGYQQPMIYGRGPMPAGM 420
Query: 434 AMLPMLLPDGRIGYVLQQPGVQQHNPPPQPR-----SGRGGAGSSSSGGRRSTDNGRGRS 488
M+PM+LPDGRIGYVLQQPGVQ P +PR +G G GG D G
Sbjct: 421 QMVPMVLPDGRIGYVLQQPGVQV--PATRPRRIDRSNGPSGQPGRGGGGGSGNDEGNRSR 478
Query: 489 RYNPY 493
RY PY
Sbjct: 479 RYRPY 483
>gi|356506096|ref|XP_003521823.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine
max]
Length = 483
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 268/483 (55%), Positives = 350/483 (72%), Gaps = 22/483 (4%)
Query: 28 ESEERVDLDEDNDHEE---EVEEEVEYEEVEEEEEVEVEEEVEE-EVEEEEETEDVVDGI 83
E +ERVDLDE+N EE +VEE+++ + V+ E+ E VEE E E+ D +
Sbjct: 6 EIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEDSAAEAGGKDQL 65
Query: 84 DAQKHYD-----GDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRH 138
+ D GD+E K++ D +DEK+KH ELLALPPHGSEV++GG+P D +DDLR
Sbjct: 66 PEAEKSDIATEFGDDEQKLSFID-EDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLRE 124
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
C+ +G++ EVR+MK +D+GE KGYAFV F+TKE+A +AIEE++S E KGK ++CS ++
Sbjct: 125 LCEPMGDILEVRLMKDRDTGEHKGYAFVAFKTKEVAQKAIEEIHSKEFKGKTLRCSLSET 184
Query: 199 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEY 258
KHRLFIGNVP+ W EDD RK V +GPGV +IEL+KDPQN ++NRGFAF+ YYN+ACA+Y
Sbjct: 185 KHRLFIGNVPKTWTEDDFRKVVEGVGPGVETIELIKDPQNPSRNRGFAFVLYYNNACADY 244
Query: 259 SRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
SRQKM++ FKLD N PTV+WADP+N+ + SA+SQVKALYVKN+P+++T ++LKELF H
Sbjct: 245 SRQKMASSSFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRH 304
Query: 318 GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
G++TKVV+PP K G +R +GF+H+AERSSA+KA+K+TEKYEIDGQ+L+ LAKPQAD+K
Sbjct: 305 GEVTKVVMPPGKAGGKRD-FGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLAKPQADKK 363
Query: 378 TSGGSNSQKSALNPTYPPHLGYG-MVGGAYGALGAGY-VPAGFAQPMVYGRGAAPGGMAM 435
GG + L+P + PH YG G YG+LGAGY V AG+ QPM+YGRG P GM M
Sbjct: 364 PDGGY-AYNPGLHPNHVPHPAYGNFSGNPYGSLGAGYGVAAGYQQPMIYGRGPMPAGMQM 422
Query: 436 LPMLLPDGRIGYVLQQPGVQQHNPPPQPR-----SGRGGAGSSSSGGRRSTDNGRGRSRY 490
+PM+LPDGRIGYVLQQPGVQ PP +PR +G G GG D G RY
Sbjct: 423 VPMMLPDGRIGYVLQQPGVQV--PPARPRRNDRSNGPSGQPGRGGGGASGNDEGNRSRRY 480
Query: 491 NPY 493
PY
Sbjct: 481 RPY 483
>gi|255648067|gb|ACU24489.1| unknown [Glycine max]
Length = 439
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 248/437 (56%), Positives = 328/437 (75%), Gaps = 15/437 (3%)
Query: 28 ESEERVDLDEDNDHEE---EVEEEVEYEEVEEEEEVEVEEEVEE-EVEEEEETEDVVDGI 83
E +ERVDLDE+N EE +VEE+++ + V+ E+ E VEE E E+ D +
Sbjct: 6 EIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEDSAAEAGGKDQL 65
Query: 84 DAQKHYD-----GDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRH 138
+ D GD+E K++ D +DEK+KH ELLALPPHGSEV++GG+P D +DDLR
Sbjct: 66 PEAEKSDIATEFGDDEQKLSFID-EDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLRE 124
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
C+ +G++ EVR+MK +D+GE KGYAFV F+ KE+A +AIEE++S E KGK ++CS ++
Sbjct: 125 LCEPMGDILEVRLMKDRDTGEHKGYAFVAFKAKEVAQKAIEEIHSKEFKGKTLRCSLSET 184
Query: 199 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEY 258
KHRLFIGNVP+ W EDD RK V +GPGV +IEL+KDPQN ++NRGFAF+ YYN+ACA+Y
Sbjct: 185 KHRLFIGNVPKTWTEDDFRKVVEGVGPGVETIELIKDPQNPSRNRGFAFVLYYNNACADY 244
Query: 259 SRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHH 317
SRQKM++ FKLD N PTV+WADP+N+ + SA+SQVKALYVKN+P+++T ++LKELF H
Sbjct: 245 SRQKMASSSFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRH 304
Query: 318 GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
G++TKVV+PP K G +R +GF+H+AERSSA+KA+K+TEKYEIDGQ+L+ LAKPQAD+K
Sbjct: 305 GEVTKVVMPPGKAGGKRD-FGFIHYAERSSALKAVKDTEKYEIDGQMLEVVLAKPQADKK 363
Query: 378 TSGGSNSQKSALNPTYPPHLGYG-MVGGAYGALGAGY-VPAGFAQPMVYGRGAAPGGMAM 435
GG + L+P + PH YG G YG+LGAGY V AG+ QPM+YGRG P GM M
Sbjct: 364 PDGGY-AYNPGLHPNHVPHPAYGNFSGNPYGSLGAGYGVAAGYQQPMIYGRGPMPAGMQM 422
Query: 436 LPMLLPDGRIGYVLQQP 452
+PM+LPDGRIGYVL P
Sbjct: 423 VPMMLPDGRIGYVLNNP 439
>gi|18411454|ref|NP_567192.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79324963|ref|NP_001031566.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13605916|gb|AAK32943.1|AF367357_1 AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|21360555|gb|AAM47474.1| AT4g00830/A_TM018A10_14 [Arabidopsis thaliana]
gi|110743368|dbj|BAE99571.1| hypothetical protein [Arabidopsis thaliana]
gi|332656540|gb|AEE81940.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656541|gb|AEE81941.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 233/438 (53%), Positives = 319/438 (72%), Gaps = 18/438 (4%)
Query: 64 EEVEEEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVY 123
E+V+EE+ E+++ ID + D++ K D++++K++ LL+LPPHGSEV+
Sbjct: 68 EDVQEEIAEDDDNH-----IDIET---ADDDEKPPSPIDDEDREKYSHLLSLPPHGSEVF 119
Query: 124 LGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS 183
+GG+P D ++DLR C+ IGE+ EVR+MK +DSG++KGYAFV F+TK++A +AIEEL+S
Sbjct: 120 IGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHS 179
Query: 184 CELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNR 243
E KGK I+CS ++ K+RLFIGN+P+NW ED+ RK + +GPGV +IEL+KDP N +NR
Sbjct: 180 KEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNR 239
Query: 244 GFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA--ESSAASQVKALYVKNL 301
GFAF+ YYN+ACA+YSRQKM + FKL+ NAPTV+WADP+++ S+AA+QVKALYVKN+
Sbjct: 240 GFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNI 299
Query: 302 PKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 361
P++ + ++LKELF HG++TK+V PP K G + +GFVH+AERSSA+KA+K+TE+YE++
Sbjct: 300 PENTSTEQLKELFQRHGEVTKIVTPPGKGG--KRDFGFVHYAERSSALKAVKDTERYEVN 357
Query: 362 GQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGA-YGALGAGYVPAG-FA 419
GQ L+ LAKPQA++K S S +A P H +G A YGA+GAG AG F+
Sbjct: 358 GQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFS 417
Query: 420 QPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQ-PRSGRGGAGSSSSGGR 478
QPM+YGRGA P GM M+PMLLPDGR+GYVLQQPG+ PPQ PR GSS GR
Sbjct: 418 QPMIYGRGAMPTGMQMVPMLLPDGRVGYVLQQPGMPMAAAPPQRPRRNDRNNGSSGGSGR 477
Query: 479 RST---DNGRGRSRYNPY 493
++ D RG RY PY
Sbjct: 478 DNSHEHDGNRGGRRYRPY 495
>gi|224130652|ref|XP_002320894.1| predicted protein [Populus trichocarpa]
gi|222861667|gb|EEE99209.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 252/483 (52%), Positives = 339/483 (70%), Gaps = 25/483 (5%)
Query: 28 ESEERVDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGIDAQK 87
E EERVDL+EDN + EE++++VE ++++E+ E + + EE EEE + +G +
Sbjct: 6 EIEERVDLEEDN-YMEEIDDDVE-DQLDEDGEDDAGDPHAEENVEEEYEDSKTEGSQKDQ 63
Query: 88 HYDGD----------EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLR 137
+ D +E K S ++EK+KHA+LLALPPHGSEV++GG+P D +D+LR
Sbjct: 64 SPEADRIVADTEPAEDEQKPTASVNEEEKEKHAQLLALPPHGSEVFIGGLPRDVIEDELR 123
Query: 138 HFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197
C+ IGE+ E+R+MK KDSGE+KG+AFV F++KE+A +AIEEL+S + KGK ++CS ++
Sbjct: 124 DLCEPIGEIFEIRLMKDKDSGESKGFAFVAFKSKEVARKAIEELHSKDYKGKTLRCSISE 183
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
K+RLFIGNVP+N ED+ RK + ++GPGV IEL+KDPQ +NRGFAFI YYN+ACA+
Sbjct: 184 TKNRLFIGNVPKNLTEDEFRKIIEEVGPGVEVIELIKDPQTPTRNRGFAFILYYNNACAD 243
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNA---ESSAASQVKALYVKNLPKDITQDRLKELF 314
YSRQKM N FKLD + PTVSWADP+ S+A+SQVKALYVKN+P++ + ++LK LF
Sbjct: 244 YSRQKMLNANFKLDGHTPTVSWADPKGTPPDHSAASSQVKALYVKNIPENTSTEQLKGLF 303
Query: 315 AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 374
HG +TKVV+PP K G + +GF+H+AERSSA+KA+++ EKYEIDGQVL+ LAKPQA
Sbjct: 304 QRHGDVTKVVMPPGKAG--KRDFGFIHYAERSSALKAVRDAEKYEIDGQVLEVVLAKPQA 361
Query: 375 DQKTSGGSNSQKSALNPTYPPHLGY-GMVGGAYGALGAGY-VPAGFAQPMVYGRGAAPGG 432
D+K + + ++P P Y G G YG+LG G+ V + F QP++YGRG P G
Sbjct: 362 DKKPD-AAYPYNAGVHPNPVPLPAYSGFAGNPYGSLGTGFGVASSFQQPVIYGRGPMPAG 420
Query: 433 MAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGAGSSSSG--GRRSTDNGRGRSRY 490
M M+PM+LPDGRIGYVLQQPGVQ P P+PR G S G G S D RGR RY
Sbjct: 421 MHMVPMVLPDGRIGYVLQQPGVQM--PQPRPRRVDRNNGPSGPGRAGNSSDDGNRGR-RY 477
Query: 491 NPY 493
PY
Sbjct: 478 RPY 480
>gi|449431998|ref|XP_004133787.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
gi|449477982|ref|XP_004155183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Cucumis
sativus]
Length = 481
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 242/442 (54%), Positives = 325/442 (73%), Gaps = 22/442 (4%)
Query: 28 ESEERVDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGIDAQK 87
E EERVDL+EDN + EE++++VE E V+E+ E+ EE EE E V G D +
Sbjct: 6 EVEERVDLEEDN-YMEEMDDDVE-EHVDEDGVDRRAGELPEEDVEEVSEEPQV-GTDTED 62
Query: 88 HYDGDEEMKVAESDKDDEK----------KKHAELLALPPHGSEVYLGGIPHDASDDDLR 137
+ D ES ++ EK +KHA+LLALPPHGSEV++GG+ D ++DLR
Sbjct: 63 KFSDDRNNLSVESIENREKSSSLLDEDDLEKHAQLLALPPHGSEVFIGGLSRDVLEEDLR 122
Query: 138 HFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197
C+S+GE+ E+RI+K KDSGE+KGYAF+ F+TKE A +AIE+L+ E+KGK I+CS +
Sbjct: 123 DMCESLGEIFEIRIIKDKDSGESKGYAFIAFKTKEAAQKAIEDLHGKEVKGKTIRCSLSD 182
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+KHRLFIGNVP++W +D+ R+ + +GPGV +IEL+KDPQN N+NRGFAF+ YYN+ACA+
Sbjct: 183 SKHRLFIGNVPKSWTDDEFRRLIEGVGPGVENIELIKDPQNPNRNRGFAFVLYYNNACAD 242
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAH 316
YSRQKMS+ FKLD N+PTVSWADP++ ++SAA+QVKALYVKN+P++ T ++LKELF
Sbjct: 243 YSRQKMSSANFKLDGNSPTVSWADPKSMPDNSAAAQVKALYVKNIPENTTTEQLKELFQQ 302
Query: 317 HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
HG++TKV +PP K G + + F+H+AERSSA+KA+K TEKYEI+GQ+L+ LAKPQ+D+
Sbjct: 303 HGEVTKVNMPPGKAGSSKRDFAFIHYAERSSALKAVKETEKYEIEGQLLEVVLAKPQSDK 362
Query: 377 KTSGGSNSQKSALNPTYPPHLGY----GMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGG 432
K+ G S ++ +YP HL + G G YG+LG V AGF QPM+YGRG P G
Sbjct: 363 KSDGAY----SHISGSYPNHLLHGGYGGYGGNPYGSLGGYGVTAGFHQPMIYGRGPMPAG 418
Query: 433 MAMLPMLLPDGRIGYVLQQPGV 454
M M+PM+LPDGRIGYVLQQPGV
Sbjct: 419 MQMVPMVLPDGRIGYVLQQPGV 440
>gi|297814257|ref|XP_002875012.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297320849|gb|EFH51271.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 494
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/430 (53%), Positives = 311/430 (72%), Gaps = 13/430 (3%)
Query: 72 EEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDA 131
+EE ED + ID + D++ K A ++E++K++ LL+LPPHGSEV++GG+P D
Sbjct: 70 QEEIAEDDDNHIDIET---ADDDEKPASPIDEEEREKYSHLLSLPPHGSEVFIGGLPRDV 126
Query: 132 SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191
++DLR C+ IGE+ EVR+MK +DSG++KGYAFV F+TK++A +AIE+L+S E KGK I
Sbjct: 127 GEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEDLHSKEFKGKTI 186
Query: 192 KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYY 251
+CS ++ K+RLFIGN+P+NW ED+ RK + +GPGV +IEL+KDP N +NRGFAF+ YY
Sbjct: 187 RCSLSETKNRLFIGNIPKNWTEDEFRKVIENVGPGVENIELIKDPANTTRNRGFAFVLYY 246
Query: 252 NHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA--ESSAASQVKALYVKNLPKDITQDR 309
N+ACA+YSRQKM + FKL+ NAPTV+WADP+++ S+AA+QVKALYVKN+P++ + ++
Sbjct: 247 NNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQ 306
Query: 310 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369
LKELF HG++TK+V PP K G + +GFVH+AERSSA+KA+K+TE+YE++GQ L+ L
Sbjct: 307 LKELFQRHGEVTKIVTPPGKGG--KRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVL 364
Query: 370 AKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGA-YGALGAGYVPAG-FAQPMVYGRG 427
AKPQA++K S S +A NP H +G A YGA+GAG AG F+QPM+YGRG
Sbjct: 365 AKPQAERKHDPSSYSYGAAPNPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRG 424
Query: 428 AAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRS----GRGGAGSSSSGGRRSTDN 483
A P GM M+PMLLPDGR+GYVLQQPG+Q PP G +G S D
Sbjct: 425 AMPTGMQMVPMLLPDGRVGYVLQQPGMQMAAAPPARPRRVDRNNGSSGGSGRDNSHEHDG 484
Query: 484 GRGRSRYNPY 493
RG RY PY
Sbjct: 485 NRGGRRYRPY 494
>gi|357512617|ref|XP_003626597.1| RNA-binding protein [Medicago truncatula]
gi|355501612|gb|AES82815.1| RNA-binding protein [Medicago truncatula]
Length = 479
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 239/450 (53%), Positives = 333/450 (74%), Gaps = 18/450 (4%)
Query: 28 ESEERVDLDEDNDHEE---EVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETE----DVV 80
E ++RVDLDE+N EE +VEE+++ + V+ E+ E VEE EE E D
Sbjct: 6 EIDDRVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEETAAEAGQKDQF 65
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFC 140
+ H ++E+K A D ++E++KH ELL+ PPHGSEV++GG+P D SDDD+R C
Sbjct: 66 PEGEKSDHGAEEDELKPALID-EEEREKHDELLSRPPHGSEVFIGGLPRDTSDDDVRELC 124
Query: 141 KSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
+ +G++ E++++K +++GE+KGYAFV ++TKE+A +AI+++++ E KGK ++C ++ KH
Sbjct: 125 EPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETKH 184
Query: 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 260
RLFIGN+P+ W ED+ RKAV +GPGV SI+L+KDPQN ++NRGFAF+ YYN+ACA++SR
Sbjct: 185 RLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSR 244
Query: 261 QKMSNPKFKLDDNAPTVSWADPRNA--ESSAASQVKALYVKNLPKDITQDRLKELFAHHG 318
QKMS+ FKLD PTV+WADP+ + +S+AASQVKALYVKN+P+++T ++LKELF HG
Sbjct: 245 QKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRRHG 304
Query: 319 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
++TKVV+PP K +R +GF+H+AERSSA+KA+K TEKYEIDGQ L+ +AKPQA++K
Sbjct: 305 EVTKVVMPPGKASGKRD-FGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKKP 363
Query: 379 SGGSNSQKSALNPTYPPHLGYG-MVGGAYGALGAGYVPAGFA---QPMVYGRGAAPGGMA 434
GG + L+P + PH GYG G YG++GAGY A A QPM+YGRG P GM
Sbjct: 364 DGGY-AYNPGLHPNHLPHPGYGNFSGNLYGSVGAGYGVAAAAAYQQPMIYGRGPMPAGMQ 422
Query: 435 MLPMLLPDGRIGYVLQQPGVQQHNPPPQPR 464
M+PM+LPDGRIGYVLQQPGVQ P P+PR
Sbjct: 423 MVPMVLPDGRIGYVLQQPGVQV--PGPRPR 450
>gi|334186264|ref|NP_001190648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656543|gb|AEE81943.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 495
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/438 (51%), Positives = 311/438 (71%), Gaps = 18/438 (4%)
Query: 64 EEVEEEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVY 123
E+V+EE+ E+++ ID + D++ K D++++K++ LL+LPPHGSEV+
Sbjct: 68 EDVQEEIAEDDDNH-----IDIET---ADDDEKPPSPIDDEDREKYSHLLSLPPHGSEVF 119
Query: 124 LGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS 183
+GG+P D ++DLR C+ IGE+ EVR+MK +DSG++KGYAFV F+TK++A +AIEEL+S
Sbjct: 120 IGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHS 179
Query: 184 CELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNR 243
E K + +RLFIGN+P+NW ED+ RK + +GPGV +IEL+KDP N +NR
Sbjct: 180 KEFKASSTANCSLSLSNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNR 239
Query: 244 GFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA--ESSAASQVKALYVKNL 301
GFAF+ YYN+ACA+YSRQKM + FKL+ NAPTV+WADP+++ S+AA+QVKALYVKN+
Sbjct: 240 GFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNI 299
Query: 302 PKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 361
P++ + ++LKELF HG++TK+V PP K G + +GFVH+AERSSA+KA+K+TE+YE++
Sbjct: 300 PENTSTEQLKELFQRHGEVTKIVTPPGKGG--KRDFGFVHYAERSSALKAVKDTERYEVN 357
Query: 362 GQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGA-YGALGAGYVPAG-FA 419
GQ L+ LAKPQA++K S S +A P H +G A YGA+GAG AG F+
Sbjct: 358 GQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFS 417
Query: 420 QPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQ-PRSGRGGAGSSSSGGR 478
QPM+YGRGA P GM M+PMLLPDGR+GYVLQQPG+ PPQ PR GSS GR
Sbjct: 418 QPMIYGRGAMPTGMQMVPMLLPDGRVGYVLQQPGMPMAAAPPQRPRRNDRNNGSSGGSGR 477
Query: 479 RST---DNGRGRSRYNPY 493
++ D RG RY PY
Sbjct: 478 DNSHEHDGNRGGRRYRPY 495
>gi|2252863|gb|AAB62861.1| similar to nucleolin protein [Arabidopsis thaliana]
gi|7267422|emb|CAB80892.1| putative protein [Arabidopsis thaliana]
Length = 521
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 233/464 (50%), Positives = 319/464 (68%), Gaps = 44/464 (9%)
Query: 64 EEVEEEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVY 123
E+V+EE+ E+++ ID + D++ K D++++K++ LL+LPPHGSEV+
Sbjct: 68 EDVQEEIAEDDDNH-----IDIET---ADDDEKPPSPIDDEDREKYSHLLSLPPHGSEVF 119
Query: 124 LGGIPHDASDDDLRHFCKSIGEVTEVR--------------IMKGKDSGEAKGYAFVTFR 169
+GG+P D ++DLR C+ IGE+ EVR +MK +DSG++KGYAFV F+
Sbjct: 120 IGGLPRDVGEEDLRDLCEEIGEIFEVRTAIIFVFHDILFVRLMKDRDSGDSKGYAFVAFK 179
Query: 170 TKELASQAIEELNSCELK------------GKKIKCSAAQAKHRLFIGNVPRNWGEDDMR 217
TK++A +AIEEL+S E K GK I+CS ++ K+RLFIGN+P+NW ED+ R
Sbjct: 180 TKDVAQKAIEELHSKEFKASSTANCSLSLSGKTIRCSLSETKNRLFIGNIPKNWTEDEFR 239
Query: 218 KAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277
K + +GPGV +IEL+KDP N +NRGFAF+ YYN+ACA+YSRQKM + FKL+ NAPTV
Sbjct: 240 KVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTV 299
Query: 278 SWADPRNA--ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+WADP+++ S+AA+QVKALYVKN+P++ + ++LKELF HG++TK+V PP K G +
Sbjct: 300 TWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGG--KR 357
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPP 395
+GFVH+AERSSA+KA+K+TE+YE++GQ L+ LAKPQA++K S S +A P
Sbjct: 358 DFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFV 417
Query: 396 HLGYGMVGGA-YGALGAGYVPAG-FAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPG 453
H +G A YGA+GAG AG F+QPM+YGRGA P GM M+PMLLPDGR+GYVLQQPG
Sbjct: 418 HPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGYVLQQPG 477
Query: 454 VQQHNPPPQ-PRSGRGGAGSSSSGGRRST---DNGRGRSRYNPY 493
+ PPQ PR GSS GR ++ D RG RY PY
Sbjct: 478 MPMAAAPPQRPRRNDRNNGSSGGSGRDNSHEHDGNRGGRRYRPY 521
>gi|334186262|ref|NP_001190647.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332656542|gb|AEE81942.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 467
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 228/438 (52%), Positives = 312/438 (71%), Gaps = 26/438 (5%)
Query: 64 EEVEEEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVY 123
E+V+EE+ E+++ ID + D++ K D++++K++ LL+LPPHGSEV+
Sbjct: 48 EDVQEEIAEDDDNH-----IDIET---ADDDEKPPSPIDDEDREKYSHLLSLPPHGSEVF 99
Query: 124 LGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS 183
+GG+P D ++DLR C+ IGE+ EVR+MK +DSG++KGYAFV F+TK++A +AIEEL+S
Sbjct: 100 IGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHS 159
Query: 184 CELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNR 243
E KGK I+CS ++ K+RLFIGN+P+NW ED+ RK + +GPG DP N +NR
Sbjct: 160 KEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPG--------DPTNTTRNR 211
Query: 244 GFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA--ESSAASQVKALYVKNL 301
GFAF+ YYN+ACA+YSRQKM + FKL+ NAPTV+WADP+++ S+AA+QVKALYVKN+
Sbjct: 212 GFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNI 271
Query: 302 PKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 361
P++ + ++LKELF HG++TK+V PP K G + +GFVH+AERSSA+KA+K+TE+YE++
Sbjct: 272 PENTSTEQLKELFQRHGEVTKIVTPPGKGG--KRDFGFVHYAERSSALKAVKDTERYEVN 329
Query: 362 GQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGA-YGALGAGYVPAG-FA 419
GQ L+ LAKPQA++K S S +A P H +G A YGA+GAG AG F+
Sbjct: 330 GQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFS 389
Query: 420 QPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQ-PRSGRGGAGSSSSGGR 478
QPM+YGRGA P GM M+PMLLPDGR+GYVLQQPG+ PPQ PR GSS GR
Sbjct: 390 QPMIYGRGAMPTGMQMVPMLLPDGRVGYVLQQPGMPMAAAPPQRPRRNDRNNGSSGGSGR 449
Query: 479 RST---DNGRGRSRYNPY 493
++ D RG RY PY
Sbjct: 450 DNSHEHDGNRGGRRYRPY 467
>gi|125535710|gb|EAY82198.1| hypothetical protein OsI_37401 [Oryza sativa Indica Group]
Length = 783
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/365 (60%), Positives = 286/365 (78%), Gaps = 18/365 (4%)
Query: 105 EKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYA 164
EK KHAELLALPPHGSEVY+GGI D S +DL+ C+ +GEV EVR+M+GKD +++GYA
Sbjct: 96 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 153
Query: 165 FVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG 224
FV FRTK LA +A++ELN+ +LKGK+I+ S++QAK++LFIGNVP +W +DD RK V ++G
Sbjct: 154 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 213
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 284
PGV+ +L+K +AN+NRG+ F+EYYNHACAEY+RQ+MS+P FKLD NAPTVSWADP+N
Sbjct: 214 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 272
Query: 285 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
+S++ SQVK++YVKNLPK++TQ +LK LF HHG+I KVV+PP++ G + +RYGFVHF +
Sbjct: 273 NDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHD-NRYGFVHFKD 331
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS---NSQKSALNPTYPPHLGYGM 401
RS AM+AL+NTE+YE+DGQVLDCSLAKP A K +S + L P+YPP LGYG+
Sbjct: 332 RSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPP-LGYGI 390
Query: 402 --VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQ--QH 457
V GAYGA PA AQPM+Y A PG AM+PM+LPDGR+ YV+QQPG Q
Sbjct: 391 MSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVPMMLPDGRLVYVVQQPGGQLPLA 444
Query: 458 NPPPQ 462
+PPPQ
Sbjct: 445 SPPPQ 449
>gi|357153147|ref|XP_003576354.1| PREDICTED: polyadenylate-binding protein 3-like [Brachypodium
distachyon]
Length = 582
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 228/387 (58%), Positives = 297/387 (76%), Gaps = 21/387 (5%)
Query: 90 DGDEEMKVA---ESDKD-DEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGE 145
D D +++V ++ KD +K KHAELL LPPHGSEVYLGGI +DA+ +DL+ C+ +GE
Sbjct: 148 DSDSKLEVVPQQDAPKDGKDKDKHAELLGLPPHGSEVYLGGISNDATSEDLKELCEPVGE 207
Query: 146 VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIG 205
V EVRIM GK E+KGYAF+TF+TK+LA +AIE+L++ KGKKI+ S++QAK++LF+G
Sbjct: 208 VVEVRIMPGKR--ESKGYAFITFKTKDLALKAIEKLSNKTFKGKKIRVSSSQAKNKLFVG 265
Query: 206 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 265
NVP +W DD++KAV ++GPGV+ I+L+KDP+ ++NRG+ F+EYYN+ACAEYSRQKMS
Sbjct: 266 NVPNSWSHDDLKKAVEEVGPGVLKIDLIKDPRT-DRNRGYGFVEYYNNACAEYSRQKMST 324
Query: 266 PKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
P FKLD NAPTVSWADP+N +S++ SQVK++YVKNLPK++TQ +LK+LF HHG+ITK+V+
Sbjct: 325 PNFKLDTNAPTVSWADPKNGDSASTSQVKSVYVKNLPKNVTQGQLKKLFEHHGEITKIVL 384
Query: 326 PPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQ 385
PP+K G + +RYGFVHF +R AMKALKNTEKYE+DGQ+LDCSLAKP AD+K S S
Sbjct: 385 PPSKDGHD-NRYGFVHFKDRHMAMKALKNTEKYELDGQLLDCSLAKPPADKKDDTVSVSS 443
Query: 386 KSALN----PTYPPHLGYGMV--GGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPML 439
+ P LGYG++ AYGA + G AQPM+Y GA PG AM+PML
Sbjct: 444 SHKSSAKGGPLLHAPLGYGIMPRPDAYGAPPS----YGAAQPMLYAPGAPPGA-AMVPML 498
Query: 440 LPDGRIGYVLQQPGVQQH--NPPPQPR 464
LPDGR+ YV+QQP QQH +PPPQ R
Sbjct: 499 LPDGRLVYVVQQPAPQQHFASPPPQAR 525
>gi|222616602|gb|EEE52734.1| hypothetical protein OsJ_35153 [Oryza sativa Japonica Group]
Length = 558
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/365 (60%), Positives = 286/365 (78%), Gaps = 18/365 (4%)
Query: 105 EKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYA 164
EK KHAELLALPPHGSEVY+GGI D S +DL+ C+ +GEV EVR+M+GKD +++GYA
Sbjct: 96 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 153
Query: 165 FVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG 224
FV FRTK LA +A++ELN+ +LKGK+I+ S++QAK++LFIGNVP +W +DD RK V ++G
Sbjct: 154 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 213
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 284
PGV+ +L+K +AN+NRG+ F+EYYNHACAEY+RQ+MS+P FKLD NAPTVSWADP+N
Sbjct: 214 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 272
Query: 285 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
+S++ SQVK++YVKNLPK++TQ +LK LF HHG+I KVV+PP++ G + +RYGFVHF +
Sbjct: 273 NDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHD-NRYGFVHFKD 331
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGG---SNSQKSALNPTYPPHLGYGM 401
RS AM+AL+NTE+YE+DGQVLDCSLAKP A K +S + L P+YPP LGYG+
Sbjct: 332 RSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPP-LGYGI 390
Query: 402 --VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQ--QH 457
V GAYGA PA AQPM+Y A PG AM+PM+LPDGR+ YV+QQPG Q
Sbjct: 391 MSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVPMMLPDGRLVYVVQQPGGQLPLA 444
Query: 458 NPPPQ 462
+PPPQ
Sbjct: 445 SPPPQ 449
>gi|346703741|emb|CBX24409.1| hypothetical_protein [Oryza glaberrima]
Length = 502
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/365 (60%), Positives = 286/365 (78%), Gaps = 18/365 (4%)
Query: 105 EKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYA 164
EK KHAELLALPPHGSEVY+GGI D S +DL+ C+ +GEV EVR+M+GKD +++GYA
Sbjct: 96 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 153
Query: 165 FVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG 224
FV FRTK LA +A++ELN+ +LKGK+I+ S++QAK++LFIGNVP +W +DD RK V ++G
Sbjct: 154 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 213
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 284
PGV+ +L+K +AN+NRG+ F+EYYNHACAEY+RQ+MS+P FKLD NAPTVSWADP+N
Sbjct: 214 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 272
Query: 285 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
+S++ SQVK++YVKNLPK++TQ +LK LF HHG+I KVV+PP++ G + +RYGFVHF +
Sbjct: 273 NDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHD-NRYGFVHFKD 331
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGG---SNSQKSALNPTYPPHLGYGM 401
RS AM+AL+NTE+YE+DGQVLDCSLAKP A K +S + L P+YPP LGYG+
Sbjct: 332 RSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPP-LGYGI 390
Query: 402 --VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQ--QH 457
V GAYGA PA AQPM+Y A PG AM+PM+LPDGR+ YV+QQPG Q
Sbjct: 391 MSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVPMMLPDGRLVYVVQQPGGQLPLA 444
Query: 458 NPPPQ 462
+PPPQ
Sbjct: 445 SPPPQ 449
>gi|108862165|gb|ABA95754.2| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108862166|gb|ABG21876.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 502
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/365 (60%), Positives = 286/365 (78%), Gaps = 18/365 (4%)
Query: 105 EKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYA 164
EK KHAELLALPPHGSEVY+GGI D S +DL+ C+ +GEV EVR+M+GKD +++GYA
Sbjct: 96 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 153
Query: 165 FVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG 224
FV FRTK LA +A++ELN+ +LKGK+I+ S++QAK++LFIGNVP +W +DD RK V ++G
Sbjct: 154 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 213
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 284
PGV+ +L+K +AN+NRG+ F+EYYNHACAEY+RQ+MS+P FKLD NAPTVSWADP+N
Sbjct: 214 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 272
Query: 285 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
+S++ SQVK++YVKNLPK++TQ +LK LF HHG+I KVV+PP++ G + +RYGFVHF +
Sbjct: 273 NDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHD-NRYGFVHFKD 331
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGG---SNSQKSALNPTYPPHLGYGM 401
RS AM+AL+NTE+YE+DGQVLDCSLAKP A K +S + L P+YPP LGYG+
Sbjct: 332 RSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPP-LGYGI 390
Query: 402 --VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQ--QH 457
V GAYGA PA AQPM+Y A PG AM+PM+LPDGR+ YV+QQPG Q
Sbjct: 391 MSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVPMMLPDGRLVYVVQQPGGQLPLA 444
Query: 458 NPPPQ 462
+PPPQ
Sbjct: 445 SPPPQ 449
>gi|29371361|gb|AAO72701.1| putative RNA-binding protein [Oryza sativa Japonica Group]
Length = 476
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/365 (60%), Positives = 286/365 (78%), Gaps = 18/365 (4%)
Query: 105 EKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYA 164
EK KHAELLALPPHGSEVY+GGI D S +DL+ C+ +GEV EVR+M+GKD +++GYA
Sbjct: 108 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 165
Query: 165 FVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG 224
FV FRTK LA +A++ELN+ +LKGK+I+ S++QAK++LFIGNVP +W +DD RK V ++G
Sbjct: 166 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 225
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 284
PGV+ +L+K +AN+NRG+ F+EYYNHACAEY+RQ+MS+P FKLD NAPTVSWADP+N
Sbjct: 226 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 284
Query: 285 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
+S++ SQVK++YVKNLPK++TQ +LK LF HHG+I KVV+PP++ G + +RYGFVHF +
Sbjct: 285 NDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHD-NRYGFVHFKD 343
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGG---SNSQKSALNPTYPPHLGYGM 401
RS AM+AL+NTE+YE+DGQVLDCSLAKP A K +S + L P+YPP LGYG+
Sbjct: 344 RSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPP-LGYGI 402
Query: 402 --VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQ--QH 457
V GAYGA PA AQPM+Y A PG AM+PM+LPDGR+ YV+QQPG Q
Sbjct: 403 MSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVPMMLPDGRLVYVVQQPGGQLPLA 456
Query: 458 NPPPQ 462
+PPPQ
Sbjct: 457 SPPPQ 461
>gi|108863978|gb|ABA91387.2| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 501
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/365 (60%), Positives = 285/365 (78%), Gaps = 18/365 (4%)
Query: 105 EKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYA 164
EK KHAELLALPPHGSEVY+GGI D S +DL+ C+ +GEV EVR+M+GKD +++GYA
Sbjct: 95 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 152
Query: 165 FVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG 224
FV FRTK LA + ++ELN+ +LKGK+I+ S++QAK++LFIGNVP +W +DD RKAV ++G
Sbjct: 153 FVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVG 212
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 284
PGV+ +L+K +AN+NRG+ F+EYYNHACAEY+RQ+MS+P FKLD NAPTVSWADP+N
Sbjct: 213 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 271
Query: 285 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
+S + SQVK++YVKNLPK++TQ +LK LF HHG+I KVV+PP++ G + +RYGFVHF +
Sbjct: 272 NDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHD-NRYGFVHFKD 330
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGG---SNSQKSALNPTYPPHLGYGM 401
RS AM+AL+NTE+YE+DGQVLDCSLAKP A K +S + L P+YPP LGYG+
Sbjct: 331 RSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPP-LGYGI 389
Query: 402 --VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQ--QH 457
V GAYGA PA AQPM+Y A PG AM+PM+LPDGR+ YV+QQPG Q
Sbjct: 390 MSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVPMMLPDGRLVYVVQQPGGQLPLA 443
Query: 458 NPPPQ 462
+PPPQ
Sbjct: 444 SPPPQ 448
>gi|115487230|ref|NP_001066102.1| Os12g0136200 [Oryza sativa Japonica Group]
gi|113648609|dbj|BAF29121.1| Os12g0136200, partial [Oryza sativa Japonica Group]
Length = 515
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 221/365 (60%), Positives = 286/365 (78%), Gaps = 18/365 (4%)
Query: 105 EKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYA 164
EK KHAELLALPPHGSEVY+GGI D S +DL+ C+ +GEV EVR+M+GKD +++GYA
Sbjct: 109 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 166
Query: 165 FVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG 224
FV FRTK LA +A++ELN+ +LKGK+I+ S++QAK++LFIGNVP +W +DD RK V ++G
Sbjct: 167 FVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVG 226
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 284
PGV+ +L+K +AN+NRG+ F+EYYNHACAEY+RQ+MS+P FKLD NAPTVSWADP+N
Sbjct: 227 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 285
Query: 285 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
+S++ SQVK++YVKNLPK++TQ +LK LF HHG+I KVV+PP++ G + +RYGFVHF +
Sbjct: 286 NDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHD-NRYGFVHFKD 344
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGG---SNSQKSALNPTYPPHLGYGM 401
RS AM+AL+NTE+YE+DGQVLDCSLAKP A K +S + L P+YPP LGYG+
Sbjct: 345 RSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPP-LGYGI 403
Query: 402 --VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQ--QH 457
V GAYGA PA AQPM+Y A PG AM+PM+LPDGR+ YV+QQPG Q
Sbjct: 404 MSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVPMMLPDGRLVYVVQQPGGQLPLA 457
Query: 458 NPPPQ 462
+PPPQ
Sbjct: 458 SPPPQ 462
>gi|222615491|gb|EEE51623.1| hypothetical protein OsJ_32902 [Oryza sativa Japonica Group]
Length = 1042
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 221/365 (60%), Positives = 285/365 (78%), Gaps = 18/365 (4%)
Query: 105 EKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYA 164
EK KHAELLALPPHGSEVY+GGI D S +DL+ C+ +GEV EVR+M+GKD +++GYA
Sbjct: 474 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 531
Query: 165 FVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG 224
FV FRTK LA + ++ELN+ +LKGK+I+ S++QAK++LFIGNVP +W +DD RKAV ++G
Sbjct: 532 FVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVG 591
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 284
PGV+ +L+K +AN+NRG+ F+EYYNHACAEY+RQ+MS+P FKLD NAPTVSWADP+N
Sbjct: 592 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 650
Query: 285 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
+S + SQVK++YVKNLPK++TQ +LK LF HHG+I KVV+PP++ G + +RYGFVHF +
Sbjct: 651 NDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHD-NRYGFVHFKD 709
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS---NSQKSALNPTYPPHLGYGM 401
RS AM+AL+NTE+YE+DGQVLDCSLAKP A K +S + L P+YPP LGYG+
Sbjct: 710 RSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPP-LGYGI 768
Query: 402 --VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQ--QH 457
V GAYGA PA AQPM+Y A PG AM+PM+LPDGR+ YV+QQPG Q
Sbjct: 769 MSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVPMMLPDGRLVYVVQQPGGQLPLA 822
Query: 458 NPPPQ 462
+PPPQ
Sbjct: 823 SPPPQ 827
>gi|346703256|emb|CBX25354.1| hypothetical_protein [Oryza brachyantha]
Length = 503
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 221/366 (60%), Positives = 285/366 (77%), Gaps = 20/366 (5%)
Query: 105 EKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYA 164
EK+K+AELLALPPHGSEVY GGI D S +DL+ C+ +GEV EVR+MKGKD +++GYA
Sbjct: 104 EKEKYAELLALPPHGSEVYFGGISSDISSEDLKKLCEPVGEVVEVRMMKGKD--DSRGYA 161
Query: 165 FVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG 224
FVTFRTK+LA +A+ ELN+ +LKGK+I+ S++QAK++LFIGNVP +W +DD RKAV ++G
Sbjct: 162 FVTFRTKDLALEAVRELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTQDDFRKAVEEVG 221
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 284
PGV+ +L+K + N+NRG+ F+EYYNHACAEY+RQKMS P FKLD NAPTVSWADP+N
Sbjct: 222 PGVLKADLMKV-SSTNRNRGYGFVEYYNHACAEYARQKMSTPTFKLDTNAPTVSWADPKN 280
Query: 285 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
+S++ SQVK++YVKNLPK++TQ +LK LF HG+ITKVV+PP++ G + +RYGFVHF +
Sbjct: 281 NDSASTSQVKSVYVKNLPKNVTQAQLKNLFERHGEITKVVLPPSRGGHD-NRYGFVHFKD 339
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAKPQA----DQKTSGGSNSQKSALNPTYPPHLGYG 400
RS AM+AL+NTE+YE+ GQVLDCSLAKP A D++ S S S + L P+YPP LGYG
Sbjct: 340 RSMAMRALQNTERYELAGQVLDCSLAKPAATDKKDERVSLPS-SNGAPLLPSYPP-LGYG 397
Query: 401 M--VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQ--Q 456
+ V AYG PA QPM+Y A PG AM+PM+LPDGR+ YV+QQPG Q
Sbjct: 398 IMSVPSAYGV-----APASITQPMLYAPRAPPGP-AMVPMMLPDGRLVYVVQQPGGQLPL 451
Query: 457 HNPPPQ 462
+PPPQ
Sbjct: 452 SSPPPQ 457
>gi|125533325|gb|EAY79873.1| hypothetical protein OsI_35035 [Oryza sativa Indica Group]
Length = 1181
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/365 (60%), Positives = 285/365 (78%), Gaps = 18/365 (4%)
Query: 105 EKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYA 164
EK KHAELLALPPHGSEVY+GGI D S +DL+ C+ +GEV EVR+M+GKD +++GYA
Sbjct: 505 EKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKD--DSRGYA 562
Query: 165 FVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG 224
FV FRTK LA + ++ELN+ +LKGK+I+ S++QAK++LFIGNVP +W +DD RKAV ++G
Sbjct: 563 FVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVG 622
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 284
PGV+ +L+K +AN+NRG+ F+EYYNHACAEY+RQ+MS+P FKLD NAPTVSWADP+N
Sbjct: 623 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 681
Query: 285 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
+S++ SQVK++YVKNLPK++TQ +LK LF HHG+I KVV+PP++ G + +RYGFVHF +
Sbjct: 682 NDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHD-NRYGFVHFKD 740
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS---NSQKSALNPTYPPHLGYGM 401
RS AM+AL+NTE+YE+DGQVLDCSLAKP A K +S + L P+YPP LGYG+
Sbjct: 741 RSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPP-LGYGI 799
Query: 402 --VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQ--QH 457
V GAYGA PA AQPM+Y A PG AM+PM+LPDG + YV+QQPG Q
Sbjct: 800 MSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVPMMLPDGHLVYVVQQPGGQLPLA 853
Query: 458 NPPPQ 462
+PPPQ
Sbjct: 854 SPPPQ 858
>gi|242067347|ref|XP_002448950.1| hypothetical protein SORBIDRAFT_05g002300 [Sorghum bicolor]
gi|241934793|gb|EES07938.1| hypothetical protein SORBIDRAFT_05g002300 [Sorghum bicolor]
Length = 498
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/393 (57%), Positives = 293/393 (74%), Gaps = 29/393 (7%)
Query: 92 DEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
D +M V + ++EK+KHAELLALPPHG+EVY+GG+ D S +DL+ +S+GEV EVR
Sbjct: 76 DSKMVVDDPKDENEKEKHAELLALPPHGAEVYVGGLSSDVSSEDLKRLFESVGEVVEVR- 134
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 211
M+GK G+ K YAF+ FRTKE+A +AI +L + +LKGKKIK S++QAK+RLFIGNVPR+W
Sbjct: 135 MRGK--GDNKAYAFINFRTKEMALKAIRKLCNKDLKGKKIKVSSSQAKNRLFIGNVPRDW 192
Query: 212 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD 271
DD + AV ++GPGV+ ++L+K P + +N+G+ FIEYYN ACAEY++QKMS P+FKLD
Sbjct: 193 TPDDFKTAVEEVGPGVLQVDLMKAP-GSGRNKGYGFIEYYNQACAEYAKQKMSTPEFKLD 251
Query: 272 DNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 330
NAPTVSWADP+NA E+++ +QVK+LYVKN+PK +TQ++LK+LF H G+ITKVVIPPAK
Sbjct: 252 TNAPTVSWADPKNANEATSTAQVKSLYVKNIPKTVTQEQLKKLFEHVGEITKVVIPPAKS 311
Query: 331 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK--TSGGSNSQKSA 388
G E +RYGFVHF ERS AMKALKNTE+YE+DGQ+LDCSLAKP AD+K T ++ +
Sbjct: 312 GHE-NRYGFVHFKERSMAMKALKNTERYELDGQLLDCSLAKPPADKKDDTVSAPTAKGAP 370
Query: 389 LNPTYPPHLGYGMVG----------GAYGALGAGY------VPAGFAQPMVYGRGAAPGG 432
L P+Y P LGYG+VG GAY LG+G + A AQPM+Y GA PG
Sbjct: 371 LLPSYAP-LGYGLVGAYNPLGNGLAGAYNPLGSGLAGAYGVLSARAAQPMLYAPGAPPGS 429
Query: 433 MAMLPMLLPDGRIGYVLQQPG---VQQHNPPPQ 462
M+PM+LPDGR+ YV Q G V +PPPQ
Sbjct: 430 -TMIPMVLPDGRLVYVPQTAGQQPVHVTSPPPQ 461
>gi|255578218|ref|XP_002529977.1| nucleolar phosphoprotein, putative [Ricinus communis]
gi|223530539|gb|EEF32420.1| nucleolar phosphoprotein, putative [Ricinus communis]
Length = 557
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 225/475 (47%), Positives = 318/475 (66%), Gaps = 55/475 (11%)
Query: 28 ESEERVDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEV-------------EEEVEEEE 74
E EERVDLDE++++ EE+E++VE + E+ ++ + + + E +E+
Sbjct: 6 EVEERVDLDEEDNYMEEMEDDVEDQLDEDGDDDDDNRDANVEENAEEDDDDSKTEGSQED 65
Query: 75 ETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDD 134
++ ++ + + DE K S ++EK+KHA+LL+LPPHGSEV++GG+P DA +D
Sbjct: 66 QSPEIARKCTNSEPLEDDE--KPTASVNEEEKEKHAQLLSLPPHGSEVFIGGLPKDALED 123
Query: 135 DLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194
DLR C+ IG++ E+R+MK KD+GE+KG+AFV FR+KE+A +AIEE++S E KGK ++CS
Sbjct: 124 DLRDLCEPIGDIFEIRLMKDKDTGESKGFAFVAFRSKEVAQKAIEEIHSKEFKGKTLRCS 183
Query: 195 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHA 254
++ K+RLF+GNVP+NW ED+ RK V ++GPGV IEL++DPQN ++NRGFAF+ YYN+A
Sbjct: 184 LSETKNRLFVGNVPKNWTEDEFRKVVEEVGPGVDIIELIRDPQNPSRNRGFAFVLYYNNA 243
Query: 255 CAEYSRQKMSNPKFKLDDNAPTVSWADPRNA--ESSAASQVKALYVKNLPKDITQDRLKE 312
CA+YSRQKM N FKL+ N PTVSWADP+ +S+AA+QVKALYVKN+P++ + ++LKE
Sbjct: 244 CADYSRQKMLNANFKLEGNTPTVSWADPKGTPDQSAAAAQVKALYVKNIPENTSTEQLKE 303
Query: 313 LFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372
LF HG +A+++ EKY+IDGQVL+ LAKP
Sbjct: 304 LFQRHG-------------------------------EAVRDNEKYQIDGQVLEVVLAKP 332
Query: 373 QADQKTSGGSNSQKSALNPTYPPHLGY-GMVGGAYGALGAGY-VPAGFAQPMVYGRGAAP 430
Q D+K G +AL+P++ H Y G G Y +LG G+ V + F QP++YGRG P
Sbjct: 333 QTDKKPD-GVYPYPAALHPSHVTHPAYGGFAGNPYSSLGGGFGVASSFQQPVIYGRGPMP 391
Query: 431 GGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGAGSSSSG--GRRSTDN 483
GM M+PM+LPDGRIGYVLQQPGVQ P P+PR GSS G G+ STD+
Sbjct: 392 AGMHMVPMVLPDGRIGYVLQQPGVQM--PQPRPRRVERSNGSSGPGRAGKTSTDH 444
>gi|346703160|emb|CBX25259.1| hypothetical_protein [Oryza brachyantha]
Length = 455
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/350 (60%), Positives = 272/350 (77%), Gaps = 21/350 (6%)
Query: 105 EKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYA 164
EK+ +AELLALPPHGSEVY+GGI D S DL+ C+ +GEV EVR+MKGKD +++GYA
Sbjct: 76 EKENYAELLALPPHGSEVYVGGISSDISSQDLKKLCEPVGEVVEVRMMKGKD--DSRGYA 133
Query: 165 FVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG 224
FVTFRTK+LA +A+ ELN+ +LKGK+I+ S++QAK++LFIGNVP +W +DD RKAV ++G
Sbjct: 134 FVTFRTKDLALEAVRELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTQDDFRKAVEEVG 193
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 284
PGV+ +L+K + N+NRG+ F+EYYNHACAEY+RQKMS P FKLD NAPTVSWADP+N
Sbjct: 194 PGVLKADLMKV-SSTNRNRGYGFVEYYNHACAEYARQKMSTPTFKLDTNAPTVSWADPKN 252
Query: 285 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
+S++ SQVK++YVKNLPK++TQ LK+LF HHG ITKVV+PP++ G + +RYGFVHF +
Sbjct: 253 NDSASTSQVKSVYVKNLPKNVTQAELKKLFEHHGDITKVVLPPSRGGHD-NRYGFVHFKD 311
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAKPQA----DQKTSGGSNSQKSALNPTYPPHLGYG 400
RS AM+AL+NTE+YE+ GQVLDCSLAKP A D++ S S S + L P+YPP LGYG
Sbjct: 312 RSMAMRALQNTERYELAGQVLDCSLAKPAATDKKDERVSLPS-SNGAPLLPSYPP-LGYG 369
Query: 401 M--VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYV 448
+ V AYG A+PM+Y A PG AM+PM+LPDGR+ YV
Sbjct: 370 IMSVPSAYG--------VAPARPMLYAPRAPPGP-AMVPMMLPDGRLVYV 410
>gi|414588669|tpg|DAA39240.1| TPA: heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 506
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 226/398 (56%), Positives = 292/398 (73%), Gaps = 32/398 (8%)
Query: 90 DGDEEMKVAESDK--DDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVT 147
D ++E K+ ++D ++EK+KHAELLALPPHG+EVY+GGI D S +DL+ +S+GEV
Sbjct: 72 DANDESKMVDADGKVENEKEKHAELLALPPHGAEVYVGGISSDVSSEDLKQLFESVGEVV 131
Query: 148 EVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNV 207
EVR M+GK G+ + YAF+ FRTK +A +AI+ L++ +LKGKKIK S +QAK+RLFIGNV
Sbjct: 132 EVR-MRGK--GDNRTYAFINFRTKAMALKAIQNLSNKDLKGKKIKVSPSQAKNRLFIGNV 188
Query: 208 PRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 267
P +W DD + AV ++GPGV+ +EL+K P ++N+G+ FIEYYN ACAEY++QKMS P+
Sbjct: 189 PHDWTHDDFKTAVEEVGPGVLKVELMKAP-GLDRNKGYGFIEYYNQACAEYAKQKMSTPE 247
Query: 268 FKLDDNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIP 326
FKLD NAPTVSWADP+NA E+++ +QVK+LYVKNLPK +TQ++LK+LF H G+ITKVV+P
Sbjct: 248 FKLDTNAPTVSWADPKNANEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVP 307
Query: 327 PAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS--NS 384
PAK G E +RYGFVHF ER AMKALKNTE+YE+DGQ+LDCSLAKP AD+K S S +
Sbjct: 308 PAKSGHE-NRYGFVHFKERYMAMKALKNTERYELDGQLLDCSLAKPPADKKDSTVSTPTA 366
Query: 385 QKSALNPTYPPHLGYGMVGG----------AY------GALGA-GYVPAGFAQPMVYGRG 427
+ L P+Y P LGYG+VG AY G GA G + A AQPMVY G
Sbjct: 367 KGGPLLPSYAP-LGYGLVGAYNPRGKGLADAYNNPLGNGLAGAYGVLSARAAQPMVYAPG 425
Query: 428 AAPGGMAMLPMLLPDGRIGYVLQQPG---VQQHNPPPQ 462
A PG M+PM+LPDGR+ YV Q G V +P PQ
Sbjct: 426 APPGS-TMIPMVLPDGRLVYVPQAAGQQPVHATSPLPQ 462
>gi|226532808|ref|NP_001151969.1| LOC100285606 [Zea mays]
gi|195651435|gb|ACG45185.1| heterogeneous nuclear ribonucleoprotein R [Zea mays]
Length = 469
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 223/388 (57%), Positives = 288/388 (74%), Gaps = 29/388 (7%)
Query: 90 DGDEEMKVAESD--KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVT 147
D ++E K+ ++D ++EK+KHAELLALPPHG+EVY+GGI D S +DL+ +S+GEV
Sbjct: 71 DANDESKMVDADGKVENEKEKHAELLALPPHGAEVYVGGISSDVSSEDLKQLFESVGEVV 130
Query: 148 EVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNV 207
EVR M+GK G+ + YAF+ FRTK +A +AI+ L++ +LKGKKIK S +QAK+RLFIGNV
Sbjct: 131 EVR-MRGK--GDNRTYAFINFRTKAMALKAIQNLSNKDLKGKKIKVSPSQAKNRLFIGNV 187
Query: 208 PRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 267
P +W DD + AV ++GPGV+ +EL+K P ++N+G+ FIEYYN ACAEY++QKMS P+
Sbjct: 188 PHDWTHDDFKTAVEEVGPGVLKVELMKAP-GLDRNKGYGFIEYYNQACAEYAKQKMSTPE 246
Query: 268 FKLDDNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIP 326
FKLD NAPTVSWADP+NA E+++ +QVK+LYVKNLPK +TQ++LK+LF H G+ITKVV+P
Sbjct: 247 FKLDTNAPTVSWADPKNANEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVP 306
Query: 327 PAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS--NS 384
PAK G E +RYGFVHF ER AMKALKNTE+YE+DGQ+LDCSLAKP AD+K S S +
Sbjct: 307 PAKSGHE-NRYGFVHFKERYMAMKALKNTERYELDGQLLDCSLAKPPADKKDSTVSTPTA 365
Query: 385 QKSALNPTYPPHLGYGMVGG----------AY------GALGA-GYVPAGFAQPMVYGRG 427
+ L P+Y P LGYG+VG AY G GA G + A AQPMVY G
Sbjct: 366 KGGPLLPSYAP-LGYGLVGAYNPRGKGLADAYNNPLGNGLAGAYGVLSARAAQPMVYAPG 424
Query: 428 AAPGGMAMLPMLLPDGRIGYVLQQPGVQ 455
A PG M+PM+LPDGR+ YV Q G Q
Sbjct: 425 APPGS-TMIPMVLPDGRLVYVPQAAGQQ 451
>gi|168039508|ref|XP_001772239.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676409|gb|EDQ62892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 507
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/471 (44%), Positives = 321/471 (68%), Gaps = 27/471 (5%)
Query: 27 IESEERVDLDEDNDHEEEVEEEVEYEEVEEEE--------EVEVEEEVEEEVEEEEETE- 77
+ EE+VD+D D +EEV++ E EEE +++++ E +E + +E+ +
Sbjct: 11 LHDEEQVDIDGAVDLDEEVDDASAEHEDEEEVEEEKAQGLDLDIDVEAQEGDDSQEDQDI 70
Query: 78 DVVDG----------IDAQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLG 125
DV++G + A + D ++ + E ++ + +K +LL PPHGSE+++G
Sbjct: 71 DVLNGDHDHGITEADLAAAEETDAHVGADVAIVEDKEEKDAEKSGDLLKRPPHGSEIFVG 130
Query: 126 GIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE 185
GI D +++DLR C S G+V EVR++K KD+G+ KGYAFVTF +E A +AIE LN E
Sbjct: 131 GITRDTTEEDLRTLCSSCGDVYEVRLLKDKDTGQNKGYAFVTFLNEECAEKAIETLNDSE 190
Query: 186 LKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 245
+KG+K++ S +Q+KHRLF+GN+P+ W ++++ +++ GPG+ S+EL+KDP+ +NRGF
Sbjct: 191 VKGRKLRFSQSQSKHRLFVGNIPKTWEKEELESVLSEQGPGIQSVELLKDPKTPGRNRGF 250
Query: 246 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQVKALYVKNLPKD 304
F+EYYNHACAE++R++MS F+L NAPT+SWADPR+ + SA SQVK +YV+NLP
Sbjct: 251 GFVEYYNHACAEHARREMSKSSFRLGTNAPTISWADPRSGPDVSAMSQVKVVYVRNLPDS 310
Query: 305 ITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV 364
+T+++L++LF HG+I KVV+P KPGQ + +GFVHF++R+ A+KA++ TE YE++G++
Sbjct: 311 VTEEQLQKLFERHGEIVKVVLPATKPGQAKRDFGFVHFSDRAQALKAIEKTEVYELEGRI 370
Query: 365 LDCSLAKPQADQKTSGGSNS---QKSALNPTYPPHLGYGMVGGAYGALGAGY-VPAGFAQ 420
L+ SLAKP A+++ +GG + Q++ L P + GYG G Y ++G Y P G+ Q
Sbjct: 371 LETSLAKPPAEKRAAGGEPAYPPQRAGLLPQHQNRSGYGYGGDVYNSVGGAYGQPRGYNQ 430
Query: 421 PMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGAG 471
P++YGRG AP GM M+PM+LPDGR+GYVLQQP Q P P R GRG G
Sbjct: 431 PIIYGRGLAPAGMTMVPMMLPDGRVGYVLQQPSGGQGGPAPY-RGGRGSHG 480
>gi|238006198|gb|ACR34134.1| unknown [Zea mays]
gi|413924828|gb|AFW64760.1| hypothetical protein ZEAMMB73_682858 [Zea mays]
Length = 499
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/387 (57%), Positives = 288/387 (74%), Gaps = 28/387 (7%)
Query: 90 DGDEEMKVAESDKDD--EKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVT 147
D + + K+ + D D EK+KHAELLALPPHG+EVY+GG+ D S +DL+ +S+GEV
Sbjct: 71 DANHDSKIVDDDPKDGNEKEKHAELLALPPHGAEVYVGGLSSDVSSEDLKQLFESVGEVA 130
Query: 148 EVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNV 207
EVR M+GK G+ K YAF+ FRTKE+A +AI++L++ +LKGKKIK S++QAK+RLFIGNV
Sbjct: 131 EVR-MRGK--GDNKTYAFINFRTKEMALKAIQKLSNKDLKGKKIKVSSSQAKNRLFIGNV 187
Query: 208 PRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 267
P +W DD + AV ++GPGV+ ++L+K P + +N+G+ FIEYYN ACAEY++QKMS P+
Sbjct: 188 PHDWTPDDFKTAVEEVGPGVLKVDLMKAP-GSGRNKGYGFIEYYNQACAEYAKQKMSTPE 246
Query: 268 FKLDDNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIP 326
FKLD NAPTVSWAD +NA E+++ SQVK+LYVKNLPK +TQ++LK+LF H G+ITKVVIP
Sbjct: 247 FKLDTNAPTVSWADHKNASEATSTSQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVIP 306
Query: 327 PAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSN--S 384
PAK G E +RYGFVHF ERS MKALKNTE+YE+DGQ+LDCS AKP AD+K GS+ +
Sbjct: 307 PAKSGHE-NRYGFVHFKERSMVMKALKNTERYELDGQLLDCSPAKPPADKKDDTGSSPTA 365
Query: 385 QKSALNPTYPPHLGYGMVG----------GAY-----GALGA-GYVPAGFAQPMVYGRGA 428
+ L P+Y P LGYG+ G GAY G GA G + A AQPM+Y GA
Sbjct: 366 KGRPLPPSYAP-LGYGLAGAYNPLGKGLAGAYNSPGNGLAGAYGVLSAHAAQPMLYAPGA 424
Query: 429 APGGMAMLPMLLPDGRIGYVLQQPGVQ 455
+PG M+PM+LPDGR+ YV Q G Q
Sbjct: 425 SPGS-TMIPMVLPDGRLVYVPQTAGQQ 450
>gi|413924827|gb|AFW64759.1| hypothetical protein ZEAMMB73_682858 [Zea mays]
Length = 509
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/387 (57%), Positives = 288/387 (74%), Gaps = 28/387 (7%)
Query: 90 DGDEEMKVAESDKDD--EKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVT 147
D + + K+ + D D EK+KHAELLALPPHG+EVY+GG+ D S +DL+ +S+GEV
Sbjct: 81 DANHDSKIVDDDPKDGNEKEKHAELLALPPHGAEVYVGGLSSDVSSEDLKQLFESVGEVA 140
Query: 148 EVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNV 207
EVR M+GK G+ K YAF+ FRTKE+A +AI++L++ +LKGKKIK S++QAK+RLFIGNV
Sbjct: 141 EVR-MRGK--GDNKTYAFINFRTKEMALKAIQKLSNKDLKGKKIKVSSSQAKNRLFIGNV 197
Query: 208 PRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 267
P +W DD + AV ++GPGV+ ++L+K P + +N+G+ FIEYYN ACAEY++QKMS P+
Sbjct: 198 PHDWTPDDFKTAVEEVGPGVLKVDLMKAP-GSGRNKGYGFIEYYNQACAEYAKQKMSTPE 256
Query: 268 FKLDDNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIP 326
FKLD NAPTVSWAD +NA E+++ SQVK+LYVKNLPK +TQ++LK+LF H G+ITKVVIP
Sbjct: 257 FKLDTNAPTVSWADHKNASEATSTSQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVIP 316
Query: 327 PAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSN--S 384
PAK G E +RYGFVHF ERS MKALKNTE+YE+DGQ+LDCS AKP AD+K GS+ +
Sbjct: 317 PAKSGHE-NRYGFVHFKERSMVMKALKNTERYELDGQLLDCSPAKPPADKKDDTGSSPTA 375
Query: 385 QKSALNPTYPPHLGYGMVG----------GAY-----GALGA-GYVPAGFAQPMVYGRGA 428
+ L P+Y P LGYG+ G GAY G GA G + A AQPM+Y GA
Sbjct: 376 KGRPLPPSYAP-LGYGLAGAYNPLGKGLAGAYNSPGNGLAGAYGVLSAHAAQPMLYAPGA 434
Query: 429 APGGMAMLPMLLPDGRIGYVLQQPGVQ 455
+PG M+PM+LPDGR+ YV Q G Q
Sbjct: 435 SPGS-TMIPMVLPDGRLVYVPQTAGQQ 460
>gi|414588668|tpg|DAA39239.1| TPA: hypothetical protein ZEAMMB73_667091 [Zea mays]
Length = 445
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/381 (57%), Positives = 285/381 (74%), Gaps = 29/381 (7%)
Query: 90 DGDEEMKVAESD--KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVT 147
D ++E K+ ++D ++EK+KHAELLALPPHG+EVY+GGI D S +DL+ +S+GEV
Sbjct: 72 DANDESKMVDADGKVENEKEKHAELLALPPHGAEVYVGGISSDVSSEDLKQLFESVGEVV 131
Query: 148 EVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNV 207
EVR M+GK G+ + YAF+ FRTK +A +AI+ L++ +LKGKKIK S +QAK+RLFIGNV
Sbjct: 132 EVR-MRGK--GDNRTYAFINFRTKAMALKAIQNLSNKDLKGKKIKVSPSQAKNRLFIGNV 188
Query: 208 PRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 267
P +W DD + AV ++GPGV+ +EL+K P ++N+G+ FIEYYN ACAEY++QKMS P+
Sbjct: 189 PHDWTHDDFKTAVEEVGPGVLKVELMKAP-GLDRNKGYGFIEYYNQACAEYAKQKMSTPE 247
Query: 268 FKLDDNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIP 326
FKLD NAPTVSWADP+NA E+++ +QVK+LYVKNLPK +TQ++LK+LF H G+ITKVV+P
Sbjct: 248 FKLDTNAPTVSWADPKNANEATSTAQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVVP 307
Query: 327 PAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS--NS 384
PAK G E +RYGFVHF ER AMKALKNTE+YE+DGQ+LDCSLAKP AD+K S S +
Sbjct: 308 PAKSGHE-NRYGFVHFKERYMAMKALKNTERYELDGQLLDCSLAKPPADKKDSTVSTPTA 366
Query: 385 QKSALNPTYPPHLGYGMVGG----------AY------GALGA-GYVPAGFAQPMVYGRG 427
+ L P+Y P LGYG+VG AY G GA G + A AQPMVY G
Sbjct: 367 KGGPLLPSYAP-LGYGLVGAYNPRGKGLADAYNNPLGNGLAGAYGVLSARAAQPMVYAPG 425
Query: 428 AAPGGMAMLPMLLPDGRIGYV 448
A PG M+PM+LPDGR+ YV
Sbjct: 426 APPGS-TMIPMVLPDGRLVYV 445
>gi|302770274|ref|XP_002968556.1| hypothetical protein SELMODRAFT_169951 [Selaginella moellendorffii]
gi|302788312|ref|XP_002975925.1| hypothetical protein SELMODRAFT_175329 [Selaginella moellendorffii]
gi|300156201|gb|EFJ22830.1| hypothetical protein SELMODRAFT_175329 [Selaginella moellendorffii]
gi|300164200|gb|EFJ30810.1| hypothetical protein SELMODRAFT_169951 [Selaginella moellendorffii]
Length = 477
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 216/482 (44%), Positives = 316/482 (65%), Gaps = 29/482 (6%)
Query: 27 IESEERVDLDEDNDHEEEVEEEVE---YEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGI 83
+ +ER+D+D D + E+ +++E + EE ++E ++++ +E E+E T D +G+
Sbjct: 10 VHDDERIDIDGDVEPEDVIDDETDGIVEEEKADQEGLDLDMNEDEGGEDEAYTTDHENGL 69
Query: 84 DAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
++ D + ES D+ ++ LL+ PPHGSEV++GG+ D ++DDLR C
Sbjct: 70 QNGENASAD----LGESVDVDDDEETKSLLSRPPHGSEVFIGGVTRDTNEDDLRELCSPC 125
Query: 144 GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF 203
GE+ EVRI+K K++G KGYAFVT+ +E A +AIE L + ELKG+K++ S +QAKHRLF
Sbjct: 126 GEIFEVRILKDKETGNNKGYAFVTYTNRETAEKAIETLANSELKGRKLRFSHSQAKHRLF 185
Query: 204 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 263
IGN+P++W ++ K + + GPGV +EL+KDP+N +NRGFAF+EYYNHACA+++R+ M
Sbjct: 186 IGNIPKSWDTPELEKILAEEGPGVEGVELLKDPRNPGKNRGFAFVEYYNHACADHARKLM 245
Query: 264 SNPKFKLDDNAPTVSWADPRN-AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITK 322
S F+L +N PTVSWADPR AE +A SQ+K +YV+NLP+ +T+++L+ LF HHG+ITK
Sbjct: 246 SRSSFRLGNNVPTVSWADPRTGAEPAATSQIKVVYVRNLPEAVTEEQLRGLFEHHGEITK 305
Query: 323 VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK----------P 372
VV+P +KPGQ + +GFVHFA+R+ A+KA++ TEKYE++G+VL+ SLAK P
Sbjct: 306 VVLPQSKPGQPKRDFGFVHFADRNDALKAIEKTEKYELEGRVLESSLAKPPVEKKGMDQP 365
Query: 373 QADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGG 432
A Q+ S Q +YP + Y +G G GY + QP++YGRG P G
Sbjct: 366 LAPQRLGILSQLQPRTAAYSYPVDI-YNNIG-----TGGGYGQNRYNQPLIYGRGPPPAG 419
Query: 433 MAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGAGSSSSGGRRSTDNGRGRS-RYN 491
M M+P+ LPDGR+GYVLQQPG+QQ + GRG SS + +G S RY
Sbjct: 420 MTMVPIQLPDGRLGYVLQQPGIQQQG----SQFGRGVLSSSYRSSSNNAGSGGSSSRRYR 475
Query: 492 PY 493
PY
Sbjct: 476 PY 477
>gi|346703354|emb|CBX25451.1| hypothetical_protein [Oryza glaberrima]
Length = 558
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 218/366 (59%), Positives = 282/366 (77%), Gaps = 21/366 (5%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEV-RIMKGKDSGEAKGYA 164
K KHAELLALPPHGSEVY+GGI D S +DL+ C+ +GEV EV R+M+GKD +++GYA
Sbjct: 152 KGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVVRMMRGKD--DSRGYA 209
Query: 165 FVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG 224
FV FRTK LA + ++ELN+ +LK I+ S++QAK++LFIGNVP +W +DD RKAV ++G
Sbjct: 210 FVNFRTKGLALKVVKELNNAKLK-VWIRVSSSQAKNKLFIGNVPHSWTDDDFRKAVEEVG 268
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 284
PGV+ +L+K +AN+NRG+ F+EYYNHACAEY+RQ+MS+P FKLD NAPTVSWADP+N
Sbjct: 269 PGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKN 327
Query: 285 AESSAASQ-VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
+S++ SQ VK++YVKNLPK++TQ +LK LF HHG+I KVV+PP++ G + +RYGFVHF
Sbjct: 328 NDSASTSQVVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHD-NRYGFVHFK 386
Query: 344 ERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGG---SNSQKSALNPTYPPHLGYG 400
+RS AM+AL+NTE+YE+DGQVLDCSLAKP A K +S + L P+YPP LGYG
Sbjct: 387 DRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPP-LGYG 445
Query: 401 M--VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQ--Q 456
+ V GAYGA PA AQPM+Y A PG AM+PM+LPDGR+ YV+QQPG Q
Sbjct: 446 IMSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVPMMLPDGRLVYVVQQPGGQLPL 499
Query: 457 HNPPPQ 462
+PPPQ
Sbjct: 500 ASPPPQ 505
>gi|413915907|gb|AFW55839.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
gi|413915908|gb|AFW55840.1| hypothetical protein ZEAMMB73_482663 [Zea mays]
Length = 492
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 230/456 (50%), Positives = 309/456 (67%), Gaps = 46/456 (10%)
Query: 21 TEREKPIESEERVDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVV 80
T+ + ++ ++R++ D+ ++ +EE E E E E E E E +E + E
Sbjct: 11 TKSAELVKQQDRLEFDDPDEVDEEEEVEYEEVEEEVEYEETEDEYGQTE----------- 59
Query: 81 DGIDAQKHYDGDEEMKVAESDKDD-EKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHF 139
A + D + K+ ++D D+ K H ELLALPPHGSEVY+GGI D S DDL+
Sbjct: 60 ----AVRQVDAKHDSKMVDADTDEGGKGSHDELLALPPHGSEVYVGGIASDVSSDDLKKL 115
Query: 140 CKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
C+S+GEV EVR M GK + YAFV FRTKELAS+AI++LN+ +LKGKKI+ S++QAK
Sbjct: 116 CESVGEVVEVR-MPGK---SGRLYAFVNFRTKELASKAIQKLNNKDLKGKKIRVSSSQAK 171
Query: 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 259
+RLFIGN+P NW E++ +KA ++GPGV+ + LVK P +++ N+G+ FIEYYN ACAEY+
Sbjct: 172 NRLFIGNIPYNWTENEFKKAAEEVGPGVLKVNLVKAP-HSDTNKGYGFIEYYNQACAEYA 230
Query: 260 RQKMSNPKFKLDDNAPTVSWADPRN-AESSAASQVKALYVKNLPKDITQDRLKELFAHHG 318
++ MS P+FKLD NAP VSWAD +N ES++ +QVK+LYVKNLPK +TQ++LK+LF H G
Sbjct: 231 KKMMSTPEFKLDKNAPNVSWADTKNGGESASTAQVKSLYVKNLPKAVTQEQLKKLFEHLG 290
Query: 319 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
++TKVVIPPAK G E +RYGFVHF ERS AMKAL++TE++E+DGQ+LDCSLAKP AD+K
Sbjct: 291 EVTKVVIPPAKAGHE-NRYGFVHFKERSMAMKALEDTERFELDGQLLDCSLAKPLADKKD 349
Query: 379 SGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAG-------------------FA 419
S + L P+Y P +GYG++ GAY LG G AG A
Sbjct: 350 D-TSAPKGGPLLPSYTP-VGYGLM-GAYNPLGNGLAVAGAYNPYGNGLAGAYGVLGAHAA 406
Query: 420 QPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQ 455
QPM+Y GA PG M+PM+LPDGR+ YV Q G Q
Sbjct: 407 QPMLYVPGAPPGS-TMIPMVLPDGRLVYVPQPAGQQ 441
>gi|212275376|ref|NP_001130564.1| uncharacterized protein LOC100191663 [Zea mays]
gi|194689494|gb|ACF78831.1| unknown [Zea mays]
gi|219887513|gb|ACL54131.1| unknown [Zea mays]
gi|238010456|gb|ACR36263.1| unknown [Zea mays]
gi|413921450|gb|AFW61382.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921451|gb|AFW61383.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921452|gb|AFW61384.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
gi|413921453|gb|AFW61385.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 467
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/393 (50%), Positives = 276/393 (70%), Gaps = 15/393 (3%)
Query: 103 DDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKG 162
++E+ K ++LALPPHGSEV++GG+P D +++DLR C+ +GE+ EVR+ K KD+ E KG
Sbjct: 88 EEERSKWDDMLALPPHGSEVFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKDTKENKG 147
Query: 163 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTK 222
+AFVTF KE A +AIE++ E KG+ ++CS +QAKHRLF+GNVP+ E+++ +
Sbjct: 148 FAFVTFMDKEAAQRAIEDVQDREFKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKG 207
Query: 223 IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP 282
GPGVI+IE+ KD + N+NRGF F+EYYNHACA+Y+RQK+S+P FK+D + TVSWA+P
Sbjct: 208 KGPGVINIEMFKDQHDPNRNRGFLFVEYYNHACADYARQKLSSPNFKVDGSQLTVSWAEP 267
Query: 283 RNAE--SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFV 340
+ + SSAA+QVK +YVKNLP++++++++K+LF HG++TK+V+PPAK G +R +GFV
Sbjct: 268 KGSTDASSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKRD-FGFV 326
Query: 341 HFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYG 400
HFAERSSA+KA+K +EKYEIDGQVL+ S+AKP AD+K +S + P YP G
Sbjct: 327 HFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLADKKP---DHSHRPGGGPNYPLPPYGG 383
Query: 401 MVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPP 460
G + QPM+YGRG AP GM M+PM+LPDGR+GYVLQQPG PP
Sbjct: 384 GGYMGDPYGAYGGGGPAYNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQPGGMPPPPP 443
Query: 461 PQPRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 493
P+ S R +G G R RY PY
Sbjct: 444 PRRGSDRRDSGRGGEGHSR---------RYRPY 467
>gi|326497929|dbj|BAJ94827.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 469
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 221/447 (49%), Positives = 311/447 (69%), Gaps = 25/447 (5%)
Query: 21 TEREKPIESEERVDLDEDNDHEEEVE--------EEVEYEEVEEEEEVEVEEEVEEEVEE 72
++R+ E EE+VDL+ D+D ++ E E + EEE E + EVE + +
Sbjct: 2 SDRQPSEEPEEQVDLEGDDDVMDDEEGYRRRRHRHGGEDSDEPEEEPEEPQIEVEGDGDG 61
Query: 73 EEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDAS 132
EE + D GDE K + ++EK K ELLALPP GSEV+LGG+P D +
Sbjct: 62 REEDAGMAVACDEPAAGSGDEMEKGDGPEDEEEKMKWEELLALPPQGSEVFLGGLPRDTT 121
Query: 133 DDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK 192
++DLR C+ +GE+ EVR+MK K++ E KG+AFVTF K++A AIEEL+ + KG+ ++
Sbjct: 122 EEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQHAIEELHDKDHKGRTLR 181
Query: 193 CSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN 252
CS +QAKHRLF+GNVP+ E+++ + GPGV++IE+ KD N ++NRGF F+EYYN
Sbjct: 182 CSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYN 241
Query: 253 HACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSA------ASQVKALYVKNLPKDIT 306
HACA+Y+RQK+S+P FK+D + TVSWA+P+ + SS+ A+QVK +YVKNLP++++
Sbjct: 242 HACADYARQKLSSPDFKVDGSQLTVSWAEPKGSSSSSSDSSSPAAQVKTIYVKNLPENVS 301
Query: 307 QDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 366
++++K+LF HG++TK+V+PPAK G +R +GFVHFAERSSA+KA+K +EKYEIDGQVL+
Sbjct: 302 KEKVKDLFEVHGEVTKIVLPPAKAGHKRD-FGFVHFAERSSALKAVKGSEKYEIDGQVLE 360
Query: 367 CSLAKPQADQKTSGGSNSQKSALNPTY--PPHLGYGMVGGAYGALGAGYVPAGFAQPMVY 424
S+AKP +D+K +S K P+Y PP+ GY +G YGA G G GF QPM+Y
Sbjct: 361 VSMAKPLSDKKP---DHSFKPGGAPSYPLPPYGGY--MGDPYGAYGGG---PGFNQPMIY 412
Query: 425 GRGAAPGGMAMLPMLLPDGRIGYVLQQ 451
GRG AP GM M+PM+LPDGR+GYVLQQ
Sbjct: 413 GRGPAPAGMRMVPMVLPDGRLGYVLQQ 439
>gi|357144466|ref|XP_003573302.1| PREDICTED: APOBEC1 complementation factor-like [Brachypodium
distachyon]
Length = 476
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/357 (53%), Positives = 264/357 (73%), Gaps = 16/357 (4%)
Query: 103 DDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKG 162
DDEK+K ELLALP G EV++GG+P D +++DLR C+ +GE+ EVR+MK KD+ E KG
Sbjct: 94 DDEKRKWDELLALPQQGCEVFIGGLPRDTTEEDLRELCEPLGEIHEVRLMKDKDTKENKG 153
Query: 163 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTK 222
+AFVTF K++A +AIEEL+ + KG+ ++CS +QAKHRLF+GNVP+ ED++ +
Sbjct: 154 FAFVTFTAKDVAQRAIEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEDELTSIIKG 213
Query: 223 IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP 282
GPGV++IE+ KD + ++NRGF F+EYYNHACA+YSRQK+S+P FK+D + TVSWA+P
Sbjct: 214 KGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYSRQKLSSPDFKVDGSQLTVSWAEP 273
Query: 283 RN------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 336
+ SS+A+QVK +YVKNLP++++++++K+LF HG++TK+V+PPAK G +R
Sbjct: 274 KGSSSSSSDSSSSAAQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRD- 332
Query: 337 YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY--P 394
+GFVHFAERSSA+KA+K +EKYEIDGQVL+ S+AKP +D+K +S + P Y P
Sbjct: 333 FGFVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLSDKKP---DHSVRPGGPPNYPLP 389
Query: 395 PHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQ 451
P+ GY G GF QPM+YGRG AP GM M+PM+LPDGR+GYVLQQ
Sbjct: 390 PYGGYMGDPYGAYGGGG----PGFNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQ 442
>gi|413921449|gb|AFW61381.1| hypothetical protein ZEAMMB73_029405 [Zea mays]
Length = 465
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 199/393 (50%), Positives = 275/393 (69%), Gaps = 17/393 (4%)
Query: 103 DDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKG 162
++E+ K ++LALPPHGSEV++GG+P D +++DLR C+ +GE+ EVR+ K KD+ E KG
Sbjct: 88 EEERSKWDDMLALPPHGSEVFIGGLPRDITEEDLRELCEPLGEIYEVRLTKDKDTKENKG 147
Query: 163 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTK 222
+AFVTF KE A +AIE++ E KG+ ++CS +QAKHRLF+GNVP+ E+++ +
Sbjct: 148 FAFVTFMDKEAAQRAIEDVQDREFKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTNTIKG 207
Query: 223 IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP 282
GPGVI+IE+ K + N+NRGF F+EYYNHACA+Y+RQK+S+P FK+D + TVSWA+P
Sbjct: 208 KGPGVINIEMFK--HDPNRNRGFLFVEYYNHACADYARQKLSSPNFKVDGSQLTVSWAEP 265
Query: 283 RNAE--SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFV 340
+ + SSAA+QVK +YVKNLP++++++++K+LF HG++TK+V+PPAK G +R +GFV
Sbjct: 266 KGSTDASSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKRD-FGFV 324
Query: 341 HFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYG 400
HFAERSSA+KA+K +EKYEIDGQVL+ S+AKP AD+K +S + P YP G
Sbjct: 325 HFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLADKKP---DHSHRPGGGPNYPLPPYGG 381
Query: 401 MVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPP 460
G + QPM+YGRG AP GM M+PM+LPDGR+GYVLQQPG PP
Sbjct: 382 GGYMGDPYGAYGGGGPAYNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQPGGMPPPPP 441
Query: 461 PQPRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 493
P+ S R +G G R RY PY
Sbjct: 442 PRRGSDRRDSGRGGEGHSR---------RYRPY 465
>gi|62733051|gb|AAX95168.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative
[Oryza sativa Japonica Group]
gi|77549578|gb|ABA92375.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|222615796|gb|EEE51928.1| hypothetical protein OsJ_33542 [Oryza sativa Japonica Group]
Length = 465
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 205/392 (52%), Positives = 273/392 (69%), Gaps = 20/392 (5%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K+K ELLALPP GSEV++GG+P D +++DLR C S GE+ EVR+MK K++ E KG+AF
Sbjct: 90 KRKWDELLALPPQGSEVFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAF 149
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGP 225
V F KE A +AIEEL+ E KG+ ++CS +QAKHRLF+GNVP+ GE+++RK + GP
Sbjct: 150 VNFTAKEAAQRAIEELHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLGEEELRKIIQGKGP 209
Query: 226 GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN- 284
GV++IE+ KD + ++NRGF F+EYYNHACA+Y+RQK+S P FK+D + TVSWA+P+
Sbjct: 210 GVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYARQKLSAPNFKVDGSQLTVSWAEPKGS 269
Query: 285 -AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
SSAA+QVK +YVKNLP++ +++++KE+F HG++TKVV+PPAK G +R +GFVHFA
Sbjct: 270 SDSSSAAAQVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRD-FGFVHFA 328
Query: 344 ERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY--PPHLGYGM 401
ERSSA+KA+K +EKYE +GQVL+ S+AKP D+K +S K A P + PP+ GY
Sbjct: 329 ERSSALKAVKGSEKYEFNGQVLEVSMAKPLGDKKP---DHSFKPAGAPNFPLPPYGGYMG 385
Query: 402 VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPP 461
G GF QPM+YGRG AP GM M+PM+LPDGR+GYVLQQPG
Sbjct: 386 DPYGAYGGGG----PGFNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQPGGIP----- 436
Query: 462 QPRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 493
G GG R + GR RY PY
Sbjct: 437 --PPPPMRRGDRRDGGSRGGEGSHGR-RYRPY 465
>gi|125533975|gb|EAY80523.1| hypothetical protein OsI_35702 [Oryza sativa Indica Group]
Length = 468
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 205/391 (52%), Positives = 272/391 (69%), Gaps = 18/391 (4%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K+K ELLALPP GSEV++GG+P D +++DLR C S GE+ EVR+MK K++ E KG+AF
Sbjct: 93 KRKWDELLALPPQGSEVFIGGLPRDTTEEDLRELCDSFGEIYEVRLMKDKETKENKGFAF 152
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGP 225
V F K+ A +AIEEL+ E KG+ ++CS +QAKHRLF+GNVP+ GE+++RK + GP
Sbjct: 153 VNFTAKDAAQRAIEELHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLGEEELRKIIQGKGP 212
Query: 226 GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN- 284
GV++IE+ KD + ++NRGF F+EYYNHACA+Y+RQK+S P FK+D + TVSWA+P+
Sbjct: 213 GVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYARQKLSAPNFKVDGSQLTVSWAEPKGS 272
Query: 285 -AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
SSAA+QVK +YVKNLP++ +++++KE+F HG++TKVV+PPAK G +R +GFVHFA
Sbjct: 273 SDSSSAAAQVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRD-FGFVHFA 331
Query: 344 ERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYP-PHLGYGMV 402
ERSSA+KA+K +EKYE DGQVL+ S+AKP D+K +S K A P +P P G M
Sbjct: 332 ERSSALKAVKGSEKYEFDGQVLEVSMAKPLGDKKP---DHSFKPAGAPNFPLPPYGAYM- 387
Query: 403 GGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQ 462
G GF QPM+YGRG AP GM M+PM+LPDGR+GYVLQQPG
Sbjct: 388 --GDPYGAYGGGGPGFNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQPGGIP------ 439
Query: 463 PRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 493
G GG R + GR RY PY
Sbjct: 440 -PPPPMRRGDRRDGGSRGGEGSHGR-RYRPY 468
>gi|115481176|ref|NP_001064181.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|18425248|gb|AAL69426.1|AC098565_8 Putative RNA-binding protein [Oryza sativa]
gi|31430199|gb|AAP52145.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113638790|dbj|BAF26095.1| Os10g0151800 [Oryza sativa Japonica Group]
gi|125574047|gb|EAZ15331.1| hypothetical protein OsJ_30749 [Oryza sativa Japonica Group]
Length = 472
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/353 (54%), Positives = 261/353 (73%), Gaps = 10/353 (2%)
Query: 103 DDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKG 162
++EK+K ELLALPP GSEV++GG+P D ++DDL C++ GE++EVR+MK K++ E KG
Sbjct: 92 EEEKRKWDELLALPPQGSEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKG 151
Query: 163 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTK 222
+AFVTF K+ A +AIE+L+ E KG+ ++CS +QAKHRLF+GNVP+ ED++R +
Sbjct: 152 FAFVTFTGKDGAQRAIEDLHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLSEDELRNIIQG 211
Query: 223 IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP 282
GPGV++IE+ KD + ++NRGF F+EYYNHACA+Y++QK+S P FK+D + TVSWA+P
Sbjct: 212 KGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWAEP 271
Query: 283 RN----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 338
+ SSAA+QVK +YVKNLP++ +++++KE+F HG++TKVV+PPAK G +R +G
Sbjct: 272 KGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKRD-FG 330
Query: 339 FVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLG 398
FVHFAERSSA+KA+K +EKYEIDGQVL+ S+AKP D+K S A N PP+ G
Sbjct: 331 FVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLGDKKPD-HSFKPGGAPNFPLPPYGG 389
Query: 399 YGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQ 451
Y G GF QPM+YGRG AP GM M+PM+LPDGR+GYVLQQ
Sbjct: 390 YMGDPYGAYGGGG----PGFNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQ 438
>gi|242080305|ref|XP_002444921.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
gi|241941271|gb|EES14416.1| hypothetical protein SORBIDRAFT_07g001490 [Sorghum bicolor]
Length = 484
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/351 (54%), Positives = 261/351 (74%), Gaps = 3/351 (0%)
Query: 103 DDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKG 162
+DE+ K ELLALPPHGS+V++GG+P D ++DDLR C+ +GE+ EVR+ K KD+ E KG
Sbjct: 102 EDERSKWDELLALPPHGSQVFIGGLPRDITEDDLRELCEPLGEIYEVRLTKDKDTNENKG 161
Query: 163 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTK 222
+AFVTF K+ A +AIE++ E KG+ ++CS +QAKHRLFIGNVP+ E+++ +
Sbjct: 162 FAFVTFTDKDAAQRAIEDVQDREYKGRTLRCSLSQAKHRLFIGNVPKGLSEEELTNIIKG 221
Query: 223 IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP 282
GPGV++IE+ KD + N+NRGF F+EYYNHACAEY+R K+S+ FK+D + TVSWA+P
Sbjct: 222 KGPGVVNIEMFKDQHDPNRNRGFLFVEYYNHACAEYARLKLSSRNFKVDGSQLTVSWAEP 281
Query: 283 RNAE--SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFV 340
+ SSAA+QVK +YVKNLP++++++++K+LF HG++TK+V+PPAK G +R +GFV
Sbjct: 282 KGQTDPSSAAAQVKTIYVKNLPENVSKEKIKDLFDKHGEVTKIVLPPAKAGHKRD-FGFV 340
Query: 341 HFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYG 400
HFAERSSA+KA+K +EKYEIDGQVL+ S+AKP AD+K S P P G G
Sbjct: 341 HFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLADKKPDHSHRSGGGPNYPLPPYGGGGG 400
Query: 401 MVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQ 451
+G YGA G G + QPM+YGRG AP GM M+PM+LPDGR+GYVLQQ
Sbjct: 401 YMGDPYGAYGGGGGGPAYNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQ 451
>gi|218184150|gb|EEC66577.1| hypothetical protein OsI_32766 [Oryza sativa Indica Group]
Length = 496
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/373 (52%), Positives = 264/373 (70%), Gaps = 26/373 (6%)
Query: 103 DDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKG 162
++EK+K ELLALPP GSEV++GG+P D ++DDL C++ GE++EVR+MK K++ E KG
Sbjct: 92 EEEKRKWDELLALPPQGSEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKG 151
Query: 163 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTK 222
+AFVTF K+ A AIE+L+ E KG+ ++CS +QAKHRLF+GNVP+ ED++R +
Sbjct: 152 FAFVTFTGKDGAQHAIEDLHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLSEDELRNIIQG 211
Query: 223 IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP 282
GPGV++IE+ KD + ++NRGF F+EYYNHACA+Y++QK+S P FK+D + TVSWA+P
Sbjct: 212 KGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWAEP 271
Query: 283 RN----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 338
+ SSAA+QVK +YVKNLP++ +++++KE+F HG++TKVV+PPAK G +R +G
Sbjct: 272 KGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKRD-FG 330
Query: 339 FVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLG 398
FVHFAERSSA+KA+K EKYEIDGQVL+ S+AKP D+K S A N PP+ G
Sbjct: 331 FVHFAERSSALKAVKGNEKYEIDGQVLEVSMAKPLGDKKPD-HSFKPGGAPNFPLPPYGG 389
Query: 399 Y-----------------GMVGGAYGALG--AGYVPAGFA-QPMVYGRGAAPGGMAMLPM 438
Y V GA G + P G A QPM+YGRG AP GM M+PM
Sbjct: 390 YMGDPYGAYGGGGPGFNQSQVPKLTGAQGGRTSHEPGGAAEQPMIYGRGPAPAGMRMVPM 449
Query: 439 LLPDGRIGYVLQQ 451
+LPDGR+GYVLQQ
Sbjct: 450 VLPDGRLGYVLQQ 462
>gi|242084538|ref|XP_002442694.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
gi|241943387|gb|EES16532.1| hypothetical protein SORBIDRAFT_08g001290 [Sorghum bicolor]
Length = 491
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 214/423 (50%), Positives = 270/423 (63%), Gaps = 71/423 (16%)
Query: 87 KHYDGDEEMKVAESDKD-DEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGE 145
+ D + K+ ++D+D DEK+ HAELL+LPPHGSEVY+GGI D S DDLR C+SIGE
Sbjct: 63 RQVDAKHDSKMVDADRDEDEKESHAELLSLPPHGSEVYVGGISSDVSSDDLRKLCESIGE 122
Query: 146 VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIG 205
V EVR M GK K YAFV FRTKELA +AI++LN+ +LKGKKI+ S++QAK+RLFIG
Sbjct: 123 VVEVR-MPGKS---GKLYAFVNFRTKELAVKAIQKLNNKDLKGKKIRVSSSQAKNRLFIG 178
Query: 206 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 265
N+P W ED ++AV ++GPGV+ + LVK P+ ++ N+G+ FIEYYN ACAEY+++KMS
Sbjct: 179 NIPYKWTEDIFKEAVEEVGPGVVKVNLVKAPR-SDTNKGYGFIEYYNQACAEYAKKKMST 237
Query: 266 PKFKLDDNAPTVSWADPRNAESSAAS------------------QVKALYVKNLPKDITQ 307
P+FKLD NAP VSWAD +N SA++ Q
Sbjct: 238 PEFKLDKNAPNVSWADTKNGGESASTSQVKSLYIKNLPKTVTQEQ--------------- 282
Query: 308 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367
LK LF H G++TKVVIPPAK G E +RYGFVHF ERS AMKALK+TE+YE+DG +LDC
Sbjct: 283 --LKRLFEHLGEVTKVVIPPAKAGHE-NRYGFVHFKERSMAMKALKDTERYELDGHLLDC 339
Query: 368 SLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVG---------------------GAY 406
SLAKP A++K S + L P+Y P LGYG++G GAY
Sbjct: 340 SLAKPLAEKKDDTTSVPKGGPLLPSYTP-LGYGLMGAYNPLGNGLAGAYNPHGNGVAGAY 398
Query: 407 GALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSG 466
G LG A AQPM+Y G AP G M+PM+LPDGR+ Y L QP QQ P P
Sbjct: 399 GVLG-----AQAAQPMLYVPG-APLGSTMIPMVLPDGRLVY-LPQPAGQQTVPMTSPPPQ 451
Query: 467 RGG 469
+GG
Sbjct: 452 KGG 454
>gi|108863977|gb|ABG22355.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 361
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/319 (59%), Positives = 248/319 (77%), Gaps = 18/319 (5%)
Query: 151 IMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRN 210
+M+GKD +++GYAFV FRTK LA + ++ELN+ +LKGK+I+ S++QAK++LFIGNVP +
Sbjct: 1 MMRGKD--DSRGYAFVNFRTKGLALKVVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHS 58
Query: 211 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL 270
W +DD RKAV ++GPGV+ +L+K +AN+NRG+ F+EYYNHACAEY+RQ+MS+P FKL
Sbjct: 59 WTDDDFRKAVEEVGPGVLKADLMKV-SSANRNRGYGFVEYYNHACAEYARQEMSSPTFKL 117
Query: 271 DDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 330
D NAPTVSWADP+N +S + SQVK++YVKNLPK++TQ +LK LF HHG+I KVV+PP++
Sbjct: 118 DSNAPTVSWADPKNNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRG 177
Query: 331 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGG---SNSQKS 387
G + +RYGFVHF +RS AM+AL+NTE+YE+DGQVLDCSLAKP A K +S +
Sbjct: 178 GHD-NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGA 236
Query: 388 ALNPTYPPHLGYGM--VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRI 445
L P+YPP LGYG+ V GAYGA PA AQPM+Y A PG AM+PM+LPDGR+
Sbjct: 237 PLLPSYPP-LGYGIMSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVPMMLPDGRL 289
Query: 446 GYVLQQPGVQ--QHNPPPQ 462
YV+QQPG Q +PPPQ
Sbjct: 290 VYVVQQPGGQLPLASPPPQ 308
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGE-VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
+++++G +PH +DDD R + +G V + +MK + +GY FV + A A
Sbjct: 48 NKLFIGNVPHSWTDDDFRKAVEEVGPGVLKADLMKVSSANRNRGYGFVEYYNHACAEYAR 107
Query: 179 EELNSCELK-------------GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGP 225
+E++S K S +Q K +++ N+P+N + +++ G
Sbjct: 108 QEMSSPTFKLDSNAPTVSWADPKNNDSVSTSQVKS-VYVKNLPKNVTQAQLKRLFEHHG- 165
Query: 226 GVISIE-LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 284
IE +V P + + F+ + + + A + Q +++LD S A P
Sbjct: 166 ---EIEKVVLPPSRGGHDNRYGFVHFKDRSMAMRALQNTE--RYELDGQVLDCSLAKPPA 220
Query: 285 AE 286
A+
Sbjct: 221 AD 222
>gi|224068117|ref|XP_002302667.1| predicted protein [Populus trichocarpa]
gi|222844393|gb|EEE81940.1| predicted protein [Populus trichocarpa]
Length = 394
Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 216/477 (45%), Positives = 287/477 (60%), Gaps = 99/477 (20%)
Query: 28 ESEERVDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGIDAQK 87
E EERVDL+EDN E E++++V+++++E+ E +
Sbjct: 6 EIEERVDLEEDNYME------------------EIDDDVQDQLDEDGEDD------AGDA 41
Query: 88 HYDGDEEMKVAESDKD-DEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEV 146
H + + E + +S + EK KHA+LL+LPPHGSEV++GG+P D +D+LR C++IGE+
Sbjct: 42 HAEENVEEEYEDSKPEGKEKDKHAQLLSLPPHGSEVFIGGLPKDVIEDELRDLCETIGEI 101
Query: 147 TEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGN 206
E+R+MK KD+GE+KG+AFV F++KE+A +A EEL S + KGK ++CS ++ K+RLFIGN
Sbjct: 102 FEIRLMKDKDTGESKGFAFVAFKSKEVARKATEELRSKDYKGKTLRCSISETKNRLFIGN 161
Query: 207 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 266
VP+N ED+ RK + ++GPG+ +EL+KDPQ +NRGFAFI YYN+ACA+YSRQKM N
Sbjct: 162 VPKNLTEDEFRKIIEEVGPGMEVLELIKDPQTPTRNRGFAFILYYNNACADYSRQKMLNA 221
Query: 267 KFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIP 326
FKLD + PTVSWADP K +P D +
Sbjct: 222 NFKLDGHTPTVSWADP----------------KGMPPDHS-------------------- 245
Query: 327 PAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQK 386
PA GQ A+++TEKYEIDGQ+L+ LAKPQAD+K GS
Sbjct: 246 PAAAGQ------------------AVRDTEKYEIDGQLLEVVLAKPQADKKPD-GSYPYN 286
Query: 387 SALNPTYPPHLGY-GMVGGAYGALGAGY-VPAGFAQPMVYGRGAAPGGMAMLPMLLPDGR 444
+ +NP P Y G G +G+LG G+ V AGF QP++YGRG P GM M+PM+LPDGR
Sbjct: 287 AGVNPNPVPLPAYSGFAGNPHGSLGTGFGVAAGFQQPVIYGRGPMPAGMHMVPMVLPDGR 346
Query: 445 IGYVLQQPGVQQHNPPPQPR--------SGRGGAGSSSSGGRRSTDNGRGRSRYNPY 493
IGYVLQQPGVQ P PQPR SG G AGSS D RGR RY PY
Sbjct: 347 IGYVLQQPGVQM--PQPQPRRVDRSNSPSGPGRAGSSGD------DGNRGR-RYRPY 394
>gi|326517573|dbj|BAK03705.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 372
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 180/343 (52%), Positives = 254/343 (74%), Gaps = 17/343 (4%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
P + Y G+ +++DLR C+ +GE+ EVR+MK K++ E KG+AFVTF K++A
Sbjct: 9 PRRARRYSWGVSPVTTEEDLRQLCEPLGEIFEVRLMKDKETKENKGFAFVTFTAKDVAQH 68
Query: 177 AIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDP 236
AIEEL+ + KG+ ++CS +QAKHRLF+GNVP+ E+++ + GPGV++IE+ KD
Sbjct: 69 AIEELHDKDHKGRTLRCSLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDL 128
Query: 237 QNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSA------A 290
N ++NRGF F+EYYNHACA+Y+RQK+S+P FK+D + TVSWA+P+ + SS+ A
Sbjct: 129 HNPSRNRGFLFVEYYNHACADYARQKLSSPDFKVDGSQLTVSWAEPKGSSSSSSDSSSPA 188
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
+QVK +YVKNLP++++++++K+LF HG++TK+V+PPAK G +R +GFVHFAERSSA+K
Sbjct: 189 AQVKTIYVKNLPENVSKEKVKDLFEVHGEVTKIVLPPAKAGHKRD-FGFVHFAERSSALK 247
Query: 351 ALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY--PPHLGYGMVGGAYGA 408
A+K +EKYEIDGQVL+ S+AKP +D+K +S K P+Y PP+ GY +G YGA
Sbjct: 248 AVKGSEKYEIDGQVLEVSMAKPLSDKKP---DHSFKPGGAPSYPLPPYGGY--MGDPYGA 302
Query: 409 LGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQ 451
G G GF QPM+YGRG AP GM M+PM+LPDGR+GYVLQQ
Sbjct: 303 YGGG---PGFNQPMIYGRGPAPAGMRMVPMVLPDGRLGYVLQQ 342
>gi|116788096|gb|ABK24755.1| unknown [Picea sitchensis]
Length = 506
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 180/406 (44%), Positives = 262/406 (64%), Gaps = 25/406 (6%)
Query: 62 VEEEVEEEVEEEEETEDV-VDGIDAQKHYDGDEEMKVAE-----------SDKDDEKKKH 109
VE+E +E+E +DV V +D +K + D + E +DKD E+
Sbjct: 59 VEDEGSGSQDEQEAEQDVNVPNVDHEKLSEDDGNIDTVEDALPAEGNGEKADKDKEECND 118
Query: 110 AELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFR 169
ELLA PPHG+EV++G +P + + +DL C+ GEV +V I + E YAFVTF
Sbjct: 119 DELLARPPHGTEVFVGNLPRNITKEDLTSLCEQHGEVFDVIIKREASKLE---YAFVTFT 175
Query: 170 TKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
TKE A +AIE LN E K KK++ S +Q K+RLF+GN+P N E+++ K V++ GPG
Sbjct: 176 TKESAKKAIETLNGFEFKDKKLRVSESQPKNRLFLGNIPSNLKEEELTKIVSEQGPGYQH 235
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSA 289
+EL+KDP++ +NRGFAF+EYYN CAE + + M++ KF+LDD TV WA ++ S+
Sbjct: 236 LELIKDPKDTTRNRGFAFVEYYNKGCAEKAMKNMTHSKFQLDDKLITVKWA---TSQRSS 292
Query: 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
+ +VK++YV+NLP+++T+++L+ELF HG++TKVV+ KPGQ + +GFVH+A+ SSAM
Sbjct: 293 SEEVKSVYVRNLPENVTEEQLRELFGRHGEVTKVVLLEQKPGQPKRDFGFVHYADHSSAM 352
Query: 350 KALKNTEKYEIDGQVLDCSLAKPQADQK--TSGGSNSQKSALNPTYPPHLGYGMVGGAYG 407
KA++ TEKY ++ + L SLA+P +D+K G S + L + P GYG Y
Sbjct: 353 KAIEKTEKYTLEDRELSVSLARPLSDKKPQNMGNPTSFQRPLFSNFQPQAGYGYNPNMY- 411
Query: 408 ALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPG 453
G+ G+ QP++YGRG P GM M+PM+LPDGR+GYVLQQPG
Sbjct: 412 ----GFGSMGYTQPVIYGRGPTPEGMTMVPMILPDGRVGYVLQQPG 453
>gi|78707789|gb|ABB46764.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|78707790|gb|ABB46765.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215694736|dbj|BAG89927.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 438
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 163/301 (54%), Positives = 229/301 (76%), Gaps = 6/301 (1%)
Query: 103 DDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKG 162
++EK+K ELLALPP GSEV++GG+P D ++DDL C++ GE++EVR+MK K++ E KG
Sbjct: 92 EEEKRKWDELLALPPQGSEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKG 151
Query: 163 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTK 222
+AFVTF K+ A +AIE+L+ E KG+ ++CS +QAKHRLF+GNVP+ ED++R +
Sbjct: 152 FAFVTFTGKDGAQRAIEDLHDKEHKGRTLRCSLSQAKHRLFVGNVPKGLSEDELRNIIQG 211
Query: 223 IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP 282
GPGV++IE+ KD + ++NRGF F+EYYNHACA+Y++QK+S P FK+D + TVSWA+P
Sbjct: 212 KGPGVVNIEMFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWAEP 271
Query: 283 RN----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 338
+ SSAA+QVK +YVKNLP++ +++++KE+F HG++TKVV+PPAK G +R +G
Sbjct: 272 KGSSSSDSSSAAAQVKTIYVKNLPENASKEKIKEIFEIHGEVTKVVLPPAKAGNKRD-FG 330
Query: 339 FVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLG 398
FVHFAERSSA+KA+K +EKYEIDGQVL+ S+AKP D+K S A N PP+ G
Sbjct: 331 FVHFAERSSALKAVKGSEKYEIDGQVLEVSMAKPLGDKKPD-HSFKPGGAPNFPLPPYGG 389
Query: 399 Y 399
Y
Sbjct: 390 Y 390
>gi|124359745|gb|ABD32695.2| RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding
EF-hand [Medicago truncatula]
Length = 559
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 135/275 (49%), Positives = 201/275 (73%), Gaps = 10/275 (3%)
Query: 28 ESEERVDLDEDNDHEE---EVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETE----DVV 80
E ++RVDLDE+N EE +VEE+++ + V+ E+ E VEE EE E D
Sbjct: 6 EIDDRVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEETAAEAGQKDQF 65
Query: 81 DGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFC 140
+ H ++E+K A D ++E++KH ELL+ PPHGSEV++GG+P D SDDD+R C
Sbjct: 66 PEGEKSDHGAEEDELKPALID-EEEREKHDELLSRPPHGSEVFIGGLPRDTSDDDVRELC 124
Query: 141 KSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
+ +G++ E++++K +++GE+KGYAFV ++TKE+A +AI+++++ E KGK ++C ++ KH
Sbjct: 125 EPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETKH 184
Query: 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 260
RLFIGN+P+ W ED+ RKAV +GPGV SI+L+KDPQN ++NRGFAF+ YYN+ACA++SR
Sbjct: 185 RLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSR 244
Query: 261 QKMSNPKFKLDDNAPTVSWADPRNA--ESSAASQV 293
QKMS+ FKLD PTV+WADP+ + +S+AASQ
Sbjct: 245 QKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQF 279
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/176 (59%), Positives = 132/176 (75%), Gaps = 8/176 (4%)
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VKALYVKN+P+++T ++LKELF HG++TKVV+PP K +R +GF+H+AERSSA+KA+
Sbjct: 359 VKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRD-FGFIHYAERSSALKAV 417
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYG-MVGGAYGALGA 411
K TEKYEIDGQ L+ +AKPQA++K GG + L+P + PH GYG G YG++GA
Sbjct: 418 KETEKYEIDGQALEVVIAKPQAEKKPDGGY-AYNPGLHPNHLPHPGYGNFSGNLYGSVGA 476
Query: 412 GYVPAGFA---QPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPR 464
GY A A QPM+YGRG P GM M+PM+LPDGRIGYVLQQPGVQ P P+PR
Sbjct: 477 GYGVAAAAAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQV--PGPRPR 530
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
+++ LP+D + D ++EL G I ++ + + E Y FV + + A KA+ +
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 356 EKYEIDGQVLDCSLA 370
E G+ L C L+
Sbjct: 166 HNKEFKGKTLRCLLS 180
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+ IP + + + L+ + GEVT+V + GK SG+ + + F+ + + A +A++E
Sbjct: 362 LYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGK-RDFGFIHYAERSSALKAVKET 420
Query: 182 NSCELKGKKIKCSAAQ 197
E+ G+ ++ A+
Sbjct: 421 EKYEIDGQALEVVIAK 436
>gi|226506072|ref|NP_001146195.1| uncharacterized protein LOC100279765 [Zea mays]
gi|219886139|gb|ACL53444.1| unknown [Zea mays]
Length = 287
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 140/236 (59%), Positives = 173/236 (73%), Gaps = 22/236 (9%)
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQVKALY 297
+ +N+G+ FIEYYN ACAEY++QKMS P+FKLD NAPTVSWAD +NA E+++ SQVK+LY
Sbjct: 6 SGRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTVSWADHKNASEATSTSQVKSLY 65
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357
VKNLPK +TQ++LK+LF H G+ITKVVIPPAK G E +RYGFVHF ERS MKALKNTE+
Sbjct: 66 VKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHE-NRYGFVHFKERSMVMKALKNTER 124
Query: 358 YEIDGQVLDCSLAKPQADQKTSGGSN--SQKSALNPTYPPHLGYGMVG----------GA 405
YE+DGQ+LDCS AKP AD+K GS+ ++ L P+Y P LGYG+ G GA
Sbjct: 125 YELDGQLLDCSPAKPPADKKDDTGSSPTAKGRPLPPSYAP-LGYGLAGAYNPLGKGLAGA 183
Query: 406 Y-----GALGA-GYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQ 455
Y G GA G + A AQPM+Y GA+PG M+PM+LPDGR+ YV Q G Q
Sbjct: 184 YNSPGNGLAGAYGVLSAHAAQPMLYAPGASPGS-TMIPMVLPDGRLVYVPQTAGQQ 238
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
+Y+ +P + + L+ + +GE+T+V I K SG Y FV F+ + + +A++
Sbjct: 63 SLYVKNLPKTVTQEQLKKLFEHVGEITKVVIPPAK-SGHENRYGFVHFKERSMVMKALKN 121
Query: 181 LNSCELKGKKIKCSAAQ 197
EL G+ + CS A+
Sbjct: 122 TERYELDGQLLDCSPAK 138
>gi|388509780|gb|AFK42956.1| unknown [Lotus japonicus]
Length = 232
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 118/196 (60%), Positives = 151/196 (77%), Gaps = 6/196 (3%)
Query: 263 MSNPKFKLDDNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 321
MS+ FKL N PTV+WADP+N+ + SA+SQVKALYVKN+P+++T D+LKELF HG++T
Sbjct: 1 MSSSSFKLYGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVT 60
Query: 322 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGG 381
KVV+PP K G +R +GF+HFAERSSA+KA+K TEKYEIDGQVL+ LAKPQA+++
Sbjct: 61 KVVMPPGKIGGKRD-FGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPD-- 117
Query: 382 SNSQKSALNPTYPPHLGYGMVGG-AYGALGAGYVPA-GFAQPMVYGRGAAPGGMAMLPML 439
+ + ++P + PH GYG G YG+LG GY A + QPM+YGRG P GM M+PM+
Sbjct: 118 AYAFNPGVHPNHLPHAGYGSYSGNPYGSLGTGYGAAPAYQQPMMYGRGPMPAGMQMVPMV 177
Query: 440 LPDGRIGYVLQQPGVQ 455
LPDGRIGYVLQQPGVQ
Sbjct: 178 LPDGRIGYVLQQPGVQ 193
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+ IP + + D L+ + GEVT+V + GK G+ + + F+ F + A +A++E
Sbjct: 35 LYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGK-RDFGFIHFAERSSALKAVKET 93
Query: 182 NSCELKGKKIKCSAAQ 197
E+ G+ ++ A+
Sbjct: 94 EKYEIDGQVLEVVLAK 109
>gi|297611204|ref|NP_001065705.2| Os11g0139500 [Oryza sativa Japonica Group]
gi|108863976|gb|ABG22354.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215767918|dbj|BAH00147.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255679771|dbj|BAF27550.2| Os11g0139500 [Oryza sativa Japonica Group]
Length = 252
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/207 (59%), Positives = 154/207 (74%), Gaps = 15/207 (7%)
Query: 263 MSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITK 322
MS+P FKLD NAPTVSWADP+N +S + SQVK++YVKNLPK++TQ +LK LF HHG+I K
Sbjct: 1 MSSPTFKLDSNAPTVSWADPKNNDSVSTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEK 60
Query: 323 VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGG- 381
VV+PP++ G + +RYGFVHF +RS AM+AL+NTE+YE+DGQVLDCSLAKP A K
Sbjct: 61 VVLPPSRGGHD-NRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRV 119
Query: 382 --SNSQKSALNPTYPPHLGYGM--VGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLP 437
+S + L P+YPP LGYG+ V GAYGA PA AQPM+Y A PG AM+P
Sbjct: 120 PLPSSNGAPLLPSYPP-LGYGIMSVPGAYGA-----APASTAQPMLYAPRAPPGA-AMVP 172
Query: 438 MLLPDGRIGYVLQQPGVQ--QHNPPPQ 462
M+LPDGR+ YV+QQPG Q +PPPQ
Sbjct: 173 MMLPDGRLVYVVQQPGGQLPLASPPPQ 199
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
VY+ +P + + L+ + GE+ +V ++ G Y FV F+ + +A +A++
Sbjct: 33 SVYVKNLPKNVTQAQLKRLFEHHGEIEKV-VLPPSRGGHDNRYGFVHFKDRSMAMRALQN 91
Query: 181 LNSCELKGKKIKCSAAQ 197
EL G+ + CS A+
Sbjct: 92 TERYELDGQVLDCSLAK 108
>gi|384250281|gb|EIE23761.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 374
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 172/265 (64%), Gaps = 7/265 (2%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEA-KGYAFVTFRTKELA 174
PPHG+EV++GGIP A++D L+ F +++GEV V ++K + E +G+ FV F+T+ A
Sbjct: 73 PPHGTEVFVGGIPRSATEDQLKVFAEAMGEVHAVVLLKDPQNNEQNRGFGFVKFKTRAAA 132
Query: 175 SQAIEELNSCELK---GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+ A+E+L +L G+ ++ + +Q+KH+L++GN+PR+ +D ++ + + GV IE
Sbjct: 133 TDALEKLAGKQLADFPGQNLRVAPSQSKHKLYVGNIPRDLSKDTLKAELDAVVKGVEVIE 192
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
L+ + NRGFAFIE+YNHACA+ ++ +S P + + + V++A+P+ A+
Sbjct: 193 LLMSKEYPGNNRGFAFIEFYNHACAQLAKNALSAPTYTMHGRSLNVAYAEPKGADQVPTQ 252
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
QVK++YV NLP + +LKELF G++TKVVIPP++P + +GFVHF+ERS K
Sbjct: 253 QVKSVYVGNLPASANEAKLKELFEQFGEVTKVVIPPSRPDKPNREFGFVHFSERSVVEKL 312
Query: 352 LKNTE---KYEIDGQVLDCSLAKPQ 373
+++ E K +D L+ +AKPQ
Sbjct: 313 VQDAEKGTKPSLDSNTLEVKMAKPQ 337
>gi|22327128|ref|NP_198191.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332006412|gb|AED93795.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 180
Score = 208 bits (529), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 120/233 (51%), Positives = 145/233 (62%), Gaps = 55/233 (23%)
Query: 263 MSNPKFKLDDNAPTVSWADPRNAE--SSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
MSNP FKLDDNAPTVSWA+ R+ S+ASQVKALY+KNLP+DITQ+RLK LF HHGKI
Sbjct: 1 MSNPSFKLDDNAPTVSWAESRSGGEGDSSASQVKALYIKNLPRDITQERLKALFEHHGKI 60
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG 380
KVVIPPAKPG+E SRYGFVH+AER+S M+ALKNTE+YEID
Sbjct: 61 LKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDA------------------ 102
Query: 381 GSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLL 440
+ ++QP+++ G A GGM+M+P++L
Sbjct: 103 -----------------------------------SAYSQPLMHAGGHAAGGMSMMPIML 127
Query: 441 PDGRIGYVLQQPGVQQHNPPPQPRSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 493
PDGRI YVLQQPG+ PP S GS SS ++S+DNGRGRSRYNPY
Sbjct: 128 PDGRIRYVLQQPGLAAMPQPPPRPSPPYRGGSGSSSSKQSSDNGRGRSRYNPY 180
>gi|281200597|gb|EFA74815.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 425
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 96/260 (36%), Positives = 165/260 (63%), Gaps = 3/260 (1%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P +EV++GG+ + ++DDL+ S+G V ++R+MK K +GE+KGYAF+TF K
Sbjct: 43 PMAENEVFVGGVSKNVTEDDLQSVFNSVGSVRQIRLMKNKLNGESKGYAFITFEDKSSCQ 102
Query: 176 QAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
A+E++++ ELKGK ++ ++ + +LF+GN+P+ + ++ + + + K G+ S++ + D
Sbjct: 103 MAVEKISNKELKGKSLRVKYSENRRKLFLGNLPKEFNKEQLLEILNKHTEGITSMDFLMD 162
Query: 236 PQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVK 294
P N +NRGFAF+E+ ++ A+ +R++ ++P F++ + TV+WADP + + V+
Sbjct: 163 PDNPTRNRGFAFVEFSDYYLADKARKEFASPSFRIGSSCVTVNWADPVQEPDEDVMKNVR 222
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL-- 352
LYV+NLP+ + LK++F G I KV+IP PGQ+R +GFVHF R +A +AL
Sbjct: 223 VLYVRNLPEQRNSEDLKKVFEEFGTIEKVIIPVNIPGQQRRDFGFVHFESREAAEEALVR 282
Query: 353 KNTEKYEIDGQVLDCSLAKP 372
N + G+ L S AKP
Sbjct: 283 HNNQPITYQGRDLIVSFAKP 302
>gi|328876236|gb|EGG24599.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 497
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/256 (37%), Positives = 161/256 (62%), Gaps = 3/256 (1%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+EV++GGI + ++++L+ +IG V +VRIMK + +GE KGY FV+F K +A+
Sbjct: 112 NEVFVGGIARNTTEEELQDLFSTIGNVKQVRIMKDRSNGENKGYGFVSFANKSNCKEAVV 171
Query: 180 ELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
+ N+ E KGK ++ ++ K ++FIGN+P+ +D + + G+ +++ + DP N+
Sbjct: 172 QFNNKEFKGKNLRVKFSENKRKIFIGNLPKELKKDQLLLILADHSDGITNVDFLTDPDNS 231
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYV 298
++NRGFAFIEY ++ AE +R++ S P FK+ + TV+WADP + + + +QV+ LY+
Sbjct: 232 SRNRGFAFIEYTDYYQAEKARKEFSQPNFKIGNCNVTVNWADPIQEPDETIMNQVRVLYI 291
Query: 299 KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY 358
+NLP +++++++LF +G I KV+IP PGQ+R +GFVHFA R A L
Sbjct: 292 RNLPDSKSEEQVRKLFEEYGVIEKVIIPNNLPGQQRRDFGFVHFANRDEAEATLARHHDT 351
Query: 359 EI--DGQVLDCSLAKP 372
I G+ L S AKP
Sbjct: 352 PITYQGRPLSLSFAKP 367
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 95/249 (38%), Gaps = 30/249 (12%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGE-VTEVRIMKGKD-SGEAKGYAFVTFRTKELASQAI 178
++++G +P + D L + +T V + D S +G+AF+ + A +A
Sbjct: 193 KIFIGNLPKELKKDQLLLILADHSDGITNVDFLTDPDNSSRNRGFAFIEYTDYYQAEKAR 252
Query: 179 EELNSCELKGKKIKCSAAQAK-------------HRLFIGNVPRNWGEDDMRKAVTKIGP 225
+E + K + A L+I N+P + E+ +RK + G
Sbjct: 253 KEFSQPNFKIGNCNVTVNWADPIQEPDETIMNQVRVLYIRNLPDSKSEEQVRKLFEEYG- 311
Query: 226 GVISIELVKDPQN--ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 283
IE V P N Q R F F+ + N AE + + + ++S+A P
Sbjct: 312 ---VIEKVIIPNNLPGQQRRDFGFVHFANRDEAEATLARHHDTPITYQGRPLSLSFAKPI 368
Query: 284 NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS----RYGF 339
+ + A L V+ L + +++ AHH ++P G S + F
Sbjct: 369 DKKQRA-----ELRVRRLQRTVSRHHTTGQQAHHLMSLPHLVPTLPQGMNISIPSNAFSF 423
Query: 340 VHFAERSSA 348
+ S++
Sbjct: 424 LQLPTNSTS 432
>gi|440796160|gb|ELR17269.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 1122
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 162/265 (61%), Gaps = 5/265 (1%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP GSEV++GG+ D ++ DL ++GE+ E+R+MK +GE+KGYAFV F + + A
Sbjct: 397 PPRGSEVFVGGLGKDVNEADLYSAFANVGEIFEIRLMKDATTGESKGYAFVRFTSPKFAK 456
Query: 176 QAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV--TKIGPGVISIELV 233
A+++++ LKG+K+ + LF+G++ ++W +DD+ + + KI GV +I L+
Sbjct: 457 LAVQQVDGAVLKGRKVGVVHSNDNQTLFLGHLDKDWRQDDLDQHLRDAKIK-GVTTITLM 515
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES-SAASQ 292
KD N +NRGFAF+E+ +H A + K+ P F+L D V WA+P N S S+
Sbjct: 516 KDTTNMARNRGFAFVEFSSHEEAAKAHAKIMKPGFRLADVDVKVDWAEPLNEPSEEVMSK 575
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK++YV NLP D+ D ++ LFA G+I ++V+ R + FV++ ERS+A+ A+
Sbjct: 576 VKSIYVCNLPVDVNDDLIRSLFAEFGEIERIVLSKNLKSARRDDFAFVNYTERSAALAAI 635
Query: 353 KNTEKYEI-DGQVLDCSLAKPQADQ 376
Y++ D VLD +LAKP +Q
Sbjct: 636 DARHGYKVDDDHVLDVTLAKPVTEQ 660
>gi|380011709|ref|XP_003689940.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q-like [Apis florea]
Length = 667
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 156/264 (59%), Gaps = 10/264 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV+ G IP D +D+L + G++ ++R+M +G +GYAF+TF +E A
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 176 QAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
QA+ ELN E+ KGKKI + + HRLF+GN+P+N DD+ + TK PG+ + +
Sbjct: 219 QAVRELNDYEIRKGKKIGVTVSYNNHRLFVGNIPKNRDRDDLFEEFTKHAPGLTEVIIYS 278
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
P + +NRGF F+EY +H A +++++S + K+ V WADP+ + S+V
Sbjct: 279 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQTMSKV 338
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
+ LYVKNL +D ++++LKE F +G I +V ++ Y FVHF ER +A+KA+
Sbjct: 339 RVLYVKNLTQDCSEEKLKESFEQYGNIERV--------KKIKDYAFVHFEERDNAVKAMN 390
Query: 354 NTEKYEIDGQVLDCSLAKPQADQK 377
EI G ++ SLAKP +D+K
Sbjct: 391 ELNGKEIGGSHIEVSLAKPPSDKK 414
>gi|347965861|ref|XP_003435825.1| AGAP001419-PC [Anopheles gambiae str. PEST]
gi|333470322|gb|EGK97589.1| AGAP001419-PC [Anopheles gambiae str. PEST]
Length = 532
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 161/264 (60%), Gaps = 10/264 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P +G EV+ G IP D +D+L + G++ ++R+M +G +GYAFVTF +++ AS
Sbjct: 164 PGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAAS 223
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
A+ ELN E++ GKKI + + HRLF+GN+P+N D++ + K PG++ + +
Sbjct: 224 NAVRELNDYEIRNGKKIGVTISFNNHRLFVGNIPKNRDRDELLEEFAKHAPGLVEVIIYS 283
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
P + +NRGF F+EY +H A +++++ + K+ + V WADP+ + S+V
Sbjct: 284 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWNCDIIVDWADPQEEPDEQTMSKV 343
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL +D ++++LKE F G++ +V ++ Y FVHF +R +A+KA+K
Sbjct: 344 KVLYVRNLTQDTSEEKLKESFEQFGRVERV--------KKIKDYAFVHFEDRDNAVKAMK 395
Query: 354 NTEKYEIDGQVLDCSLAKPQADQK 377
+ + E+ G ++ SLAKP +D+K
Sbjct: 396 DLDGKEVGGSNIEVSLAKPPSDKK 419
>gi|241236734|ref|XP_002400928.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
gi|215496107|gb|EEC05748.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
Length = 438
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 159/264 (60%), Gaps = 10/264 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV++G IP D +D+L + G + ++R+M SG +GYAF+TF ++ A
Sbjct: 163 PASGCEVFVGKIPKDMFEDELIPLFEKCGRIWDLRLMMDPLSGLNRGYAFITFCNRDGAH 222
Query: 176 QAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
++ EL++ E+ KGK I + + HRLF+GN+P+N G++++ + +K PG+ + +
Sbjct: 223 NSVRELDNYEIRKGKYIGVTISINNHRLFVGNIPKNRGKEELYEEFSKHAPGLTEVIIYS 282
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQV 293
P + +NRGF F+EY +H A +++++S + K+ V WADP+ + ++V
Sbjct: 283 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWSCDIIVDWADPQEEPDQETMAKV 342
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL D+T++RLKELF HG++ +V ++ Y FVHF ER A+KA+
Sbjct: 343 KVLYVRNLTADVTEERLKELFEQHGRVERV--------KKIKDYAFVHFEERDHAVKAMN 394
Query: 354 NTEKYEIDGQVLDCSLAKPQADQK 377
+ ++ G ++ SLAKP +D+K
Sbjct: 395 QLQGKDLCGAPMEVSLAKPPSDKK 418
>gi|195055139|ref|XP_001994478.1| GH17270 [Drosophila grimshawi]
gi|193892241|gb|EDV91107.1| GH17270 [Drosophila grimshawi]
Length = 532
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 158/265 (59%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 162 VPGNGCEVFCGKIPKDMFEDELIPLFENCGVIWDLRLMMDPMTGTNRGYAFVTFTNREAA 221
Query: 175 SQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +LN E+ KGKKI + + HRLF+GN+P+N D++ + +K PG+ + +
Sbjct: 222 INAVRQLNDFEIRKGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIY 281
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 282 SSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 341
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+T+D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 342 VKVLYVRNLTQDVTEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 393
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ E+ ++ SLAKP +D+K
Sbjct: 394 RGLNGKEVGASNIEVSLAKPPSDKK 418
>gi|193683845|ref|XP_001950620.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Acyrthosiphon pisum]
Length = 533
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 124/385 (32%), Positives = 193/385 (50%), Gaps = 39/385 (10%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV+ G +P+ +D+L + G++ ++R+M SG +GYAFVT+ TKE A
Sbjct: 155 PTAGCEVFCGKLPNTVFEDELIPLFEKCGKIYDLRLMMDPLSGTNRGYAFVTYTTKEEAE 214
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A EL+ E+K GK IK + + RLFIGN+P++ G++D+ + KI G+ + +
Sbjct: 215 RATVELDGYEIKPGKNIKVNISVPNLRLFIGNIPKSKGKEDIMEEFGKITSGLTEVIIYS 274
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
P + +NRGF F+EY +H A +++++S P +K+ V WADP+ + S+V
Sbjct: 275 SPDDRRKNRGFCFLEYDSHKAASVAKRRLSAPNYKVWGCDIIVDWADPQEEPDDETMSKV 334
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL +++T++RLKE F HG + +V ++ Y F+HF +R A+KAL+
Sbjct: 335 KVLYVRNLTQEVTENRLKETFEVHGSVERV--------KKIKDYAFIHFNDRGCALKALE 386
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGY 413
+DG L+ SLAKP +D+K +K + + M G A+G +
Sbjct: 387 ELNGSNLDGATLEVSLAKPPSDKK-------KKEEILRARERRMFTNMQGRAFGLMPQPL 439
Query: 414 VPAGFAQP---------MVYGRGAAPGGMAMLPMLLPDGRIGYVLQQP-------GVQQH 457
G +P + GRG + P GR P Q H
Sbjct: 440 SLMGAPRPGYRAVSNNLRMAGRGEFDWPWGFNSWMWPAGRWDAGAAGPWGTASTGNRQWH 499
Query: 458 NPPPQPRS------GRGGAGSSSSG 476
P RS GR GA +SSG
Sbjct: 500 GVAPNNRSWGNGSGGRIGAAGNSSG 524
>gi|442620153|ref|NP_001262779.1| syncrip, isoform M [Drosophila melanogaster]
gi|440217681|gb|AGB96159.1| syncrip, isoform M [Drosophila melanogaster]
Length = 699
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 158/265 (59%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 193 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 252
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +LN E++ GKKI + + HRLF+GN+P+N D++ + +K PG+ + +
Sbjct: 253 VNAVRQLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIY 312
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 313 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 372
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 373 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 424
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 425 RGLNGKEIGASNIEVSLAKPPSDKK 449
>gi|442620147|ref|NP_001262777.1| syncrip, isoform J [Drosophila melanogaster]
gi|440217678|gb|AGB96157.1| syncrip, isoform J [Drosophila melanogaster]
Length = 761
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 158/265 (59%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +LN E++ GKKI + + HRLF+GN+P+N D++ + +K PG+ + +
Sbjct: 261 VNAVRQLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIY 320
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 380
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 381 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 432
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 433 RGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|161078446|ref|NP_732558.2| syncrip, isoform C [Drosophila melanogaster]
gi|16197897|gb|AAL13706.1| GH28335p [Drosophila melanogaster]
gi|158030317|gb|AAN13833.2| syncrip, isoform C [Drosophila melanogaster]
gi|220945692|gb|ACL85389.1| CG17838-PC [synthetic construct]
gi|220955464|gb|ACL90275.1| CG17838-PC [synthetic construct]
Length = 529
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 158/265 (59%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +LN E++ GKKI + + HRLF+GN+P+N D++ + +K PG+ + +
Sbjct: 219 VNAVRQLNDFEIRTGKKIGVTISFNNHRLFVGNIPKNRDRDELIEEFSKHAPGLYEVIIY 278
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 338
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 339 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 390
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 391 RGLNGKEIGASNIEVSLAKPPSDKK 415
>gi|427784529|gb|JAA57716.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Rhipicephalus pulchellus]
Length = 608
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/261 (35%), Positives = 160/261 (61%), Gaps = 10/261 (3%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L + G++ ++R+M SG +GYAF+TF +E A ++
Sbjct: 159 GCEVFVGKIPKDMFEDELIPLFEKCGKIWDLRLMMDPLSGLNRGYAFITFCNREGAHNSV 218
Query: 179 EELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
EL++ E+ KGK I + + HRLF+GN+P+N G++++ + +K PG+ + + P
Sbjct: 219 RELDNHEIRKGKYIGVTISINNHRLFVGNIPKNRGKEELFEEFSKHAPGLTEVIIYSSPD 278
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQVKAL 296
+ +NRGF F+EY +H A +++++S + K+ V WADP+ + ++VK L
Sbjct: 279 DKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWSCDIIVDWADPQEEPDEETMAKVKVL 338
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
YV+NL D+T+++LKELF HG++ +V ++ Y FVHF ER A++A++ +
Sbjct: 339 YVRNLTTDVTEEKLKELFEAHGRVERV--------KKIKDYAFVHFEERDHAVRAMEQLQ 390
Query: 357 KYEIDGQVLDCSLAKPQADQK 377
++ G ++ SLAKP +D+K
Sbjct: 391 GKDLCGAPMEVSLAKPPSDKK 411
>gi|383847619|ref|XP_003699450.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Megachile rotundata]
Length = 664
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 159/264 (60%), Gaps = 10/264 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV+ G IP D +D+L + G++ ++R+M +G +GYAF+TF +E A
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
QA++EL++ E+K GK +K + + RLF+GN+P++ G++++ + K+ G+ + +
Sbjct: 219 QAVKELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLTEVIIYS 278
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
P + +NRGF F+EY +H A +++++S + K+ V WADP+ + S+V
Sbjct: 279 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQTMSKV 338
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
+ LYVKNL +D ++++LKE+F +G I +V ++ Y FVHF ER +A+KA+
Sbjct: 339 RVLYVKNLTQDCSEEKLKEVFEQYGNIERV--------KKIKDYAFVHFEERDNAVKAMN 390
Query: 354 NTEKYEIDGQVLDCSLAKPQADQK 377
EI G ++ SLAKP +D+K
Sbjct: 391 ELNGKEIGGSHIEVSLAKPPSDKK 414
>gi|118794756|ref|XP_321714.3| AGAP001419-PA [Anopheles gambiae str. PEST]
gi|347965857|ref|XP_003435823.1| AGAP001419-PB [Anopheles gambiae str. PEST]
gi|347965859|ref|XP_003435824.1| AGAP001419-PD [Anopheles gambiae str. PEST]
gi|116116446|gb|EAA43192.3| AGAP001419-PA [Anopheles gambiae str. PEST]
gi|333470321|gb|EGK97588.1| AGAP001419-PB [Anopheles gambiae str. PEST]
gi|333470323|gb|EGK97590.1| AGAP001419-PD [Anopheles gambiae str. PEST]
Length = 532
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 161/264 (60%), Gaps = 10/264 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P +G EV+ G IP D +D+L + G++ ++R+M +G +GYAFVTF +++ AS
Sbjct: 164 PGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAAS 223
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
A+ ELN+ E+K G +K + + RLF+GN+P++ G++++ K+ G++ + +
Sbjct: 224 NAVRELNNYEIKPGNCLKINVSVPNLRLFVGNIPKSKGKEEILDEFGKLTAGLVEVIIYS 283
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
P + +NRGF F+EY +H A +++++ + K+ + V WADP+ + S+V
Sbjct: 284 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWNCDIIVDWADPQEEPDEQTMSKV 343
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL +D ++++LKE F G++ +V ++ Y FVHF +R +A+KA+K
Sbjct: 344 KVLYVRNLTQDTSEEKLKESFEQFGRVERV--------KKIKDYAFVHFEDRDNAVKAMK 395
Query: 354 NTEKYEIDGQVLDCSLAKPQADQK 377
+ + E+ G ++ SLAKP +D+K
Sbjct: 396 DLDGKEVGGSNIEVSLAKPPSDKK 419
>gi|302848854|ref|XP_002955958.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
gi|300258684|gb|EFJ42918.1| hypothetical protein VOLCADRAFT_107013 [Volvox carteri f.
nagariensis]
Length = 827
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 164/271 (60%), Gaps = 10/271 (3%)
Query: 113 LALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE 172
++LPPHG+EV++ +P +A+D +R FC+ GEV +RI K ++S KGY F F+ +E
Sbjct: 95 MSLPPHGTEVFISKVPREATDAQVRAFCEMAGEVFALRIPKDRESNTNKGYCFCVFKARE 154
Query: 173 LASQAIEELNSCELK---GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
A +A+ L E+K G+++ + K++L+IG +PR+ +++ + G+
Sbjct: 155 SAEKAMTILEGREVKEFPGRRVNVVPSIVKNKLYIGQMPRDITREELEVLLKAEVVGLEK 214
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSA 289
IEL+ D + NQ RGF FI +YN A A + +K+S P+F+L + V WADP+ E
Sbjct: 215 IELMMD-KETNQARGFGFIAFYNSAAATLALRKLSRPEFRLRGHQVQVMWADPKRDE-IG 272
Query: 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI--PPAKPGQERSRYGFVHFAERSS 347
+VK++YV NLP+ T++ L+ +F+ +G + +V + P P + R+ Y F+++ +RSS
Sbjct: 273 TEKVKSIYVGNLPEQYTENDLRAIFSQYGTVERVTLLYMPDDPTKLRN-YTFINYTDRSS 331
Query: 348 AMKALKNTE--KYEIDGQVLDCSLAKPQADQ 376
A++A+ E K+ + + L +AKPQA +
Sbjct: 332 ALRAVSEAENKKHIMTDKELIVHMAKPQAQR 362
>gi|195113079|ref|XP_002001097.1| GI10594 [Drosophila mojavensis]
gi|193917691|gb|EDW16558.1| GI10594 [Drosophila mojavensis]
Length = 721
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 159/265 (60%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 218 VPGNGCEVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAA 277
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 278 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 337
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 338 SSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 397
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+T+D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 398 VKVLYVRNLTQDVTEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 449
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ E+ ++ SLAKP +D+K
Sbjct: 450 RGLNGKEVGASNIEVSLAKPPSDKK 474
>gi|270001371|gb|EEZ97818.1| hypothetical protein TcasGA2_TC000185 [Tribolium castaneum]
Length = 638
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 162/264 (61%), Gaps = 10/264 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV+ G IP D +D+L + G + ++R+M +G +GYAFVTF T++ A
Sbjct: 173 PGAGCEVFCGKIPKDMYEDELIPLFEGCGTIWDLRLMMDPMTGTNRGYAFVTFTTRDAAQ 232
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
QA+++L++ E+K GK +K + + RLF+GN+P++ G++++ + K+ G++ + +
Sbjct: 233 QAVQKLDNHEIKPGKTLKINISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLVEVIIYS 292
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+V
Sbjct: 293 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKV 352
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL ++I++++LKE F +GK+ +V ++ Y F+HF +R +A+KA++
Sbjct: 353 KVLYVRNLTQEISEEKLKEAFEAYGKVERV--------KKIKDYAFIHFEDRENAVKAME 404
Query: 354 NTEKYEIDGQVLDCSLAKPQADQK 377
+ E+ G ++ SLAKP +D+K
Sbjct: 405 ELDGKEMGGSNIEVSLAKPPSDKK 428
>gi|328789990|ref|XP_392307.4| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Apis
mellifera]
Length = 664
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 157/264 (59%), Gaps = 10/264 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV+ G IP D +D+L + G++ ++R+M +G +GYAF+TF +E A
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
QA+ EL++ E+K GK +K + + RLF+GN+P++ G++++ + K+ G+ + +
Sbjct: 219 QAVRELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLTEVIIYS 278
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
P + +NRGF F+EY +H A +++++S + K+ V WADP+ + S+V
Sbjct: 279 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQTMSKV 338
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
+ LYVKNL +D ++++LKE F +G I +V ++ Y FVHF ER +A+KA+
Sbjct: 339 RVLYVKNLTQDCSEEKLKESFEQYGNIERV--------KKIKDYAFVHFEERDNAVKAMN 390
Query: 354 NTEKYEIDGQVLDCSLAKPQADQK 377
EI G ++ SLAKP +D+K
Sbjct: 391 ELNGKEIGGSHIEVSLAKPPSDKK 414
>gi|307173250|gb|EFN64303.1| Heterogeneous nuclear ribonucleoprotein Q [Camponotus floridanus]
Length = 683
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 158/264 (59%), Gaps = 10/264 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV+ G IP D +D+L + G++ ++R+M SG +GYAF+TF +E A
Sbjct: 156 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQ 215
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
QA+ EL++ E+K GK +K + + RLF+GN+P++ G++++ + K+ G+ + +
Sbjct: 216 QAVRELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLTEVIIYS 275
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
P + +NRGF F+EY +H A +++++S + K+ V WADP+ + S+V
Sbjct: 276 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQTMSKV 335
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
+ LYV+NL +D ++++LKE F +GKI +V ++ Y F+HF +R +A+KA+
Sbjct: 336 RVLYVRNLTQDCSEEKLKESFEQYGKIERV--------KKIKDYAFIHFEDRDNAVKAMN 387
Query: 354 NTEKYEIDGQVLDCSLAKPQADQK 377
E+ G ++ SLAKP +D+K
Sbjct: 388 ELNGKEMGGSHIEVSLAKPPSDKK 411
>gi|350409228|ref|XP_003488661.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Bombus
impatiens]
Length = 664
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 157/264 (59%), Gaps = 10/264 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV+ G IP D +D+L + G++ ++R+M +G +GYAF+TF +E A
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
QA+ EL++ E+K GK +K + + RLF+GN+P++ G++++ + K+ G+ + +
Sbjct: 219 QAVRELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLTEVIIYS 278
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
P + +NRGF F+EY +H A +++++S + K+ V WADP+ + S+V
Sbjct: 279 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQTMSKV 338
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
+ LYVKNL +D ++++LKE F +G I +V ++ Y FVHF ER +A+KA+
Sbjct: 339 RVLYVKNLTQDCSEEKLKESFEQYGNIERV--------KKIKDYAFVHFEERDNAVKAMN 390
Query: 354 NTEKYEIDGQVLDCSLAKPQADQK 377
EI G ++ SLAKP +D+K
Sbjct: 391 ELNGKEIGGSHIEVSLAKPPSDKK 414
>gi|195390987|ref|XP_002054147.1| GJ22950 [Drosophila virilis]
gi|194152233|gb|EDW67667.1| GJ22950 [Drosophila virilis]
Length = 789
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 159/265 (60%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 162 VPGNGCEVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAA 221
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 222 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 282 SSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 341
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+T+D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 342 VKVLYVRNLTQDVTEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 393
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ E+ ++ SLAKP +D+K
Sbjct: 394 RGLNGKEVGASNIEVSLAKPPSDKK 418
>gi|194744098|ref|XP_001954532.1| GF16693 [Drosophila ananassae]
gi|190627569|gb|EDV43093.1| GF16693 [Drosophila ananassae]
Length = 710
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 159/265 (60%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 162 VPGNGCEVFCGKIPKDMYEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAA 221
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 222 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 282 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 341
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 342 VKVLYVRNLTQDVSEDKLKEHFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 393
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 394 RGLNGKEIGASNIEVSLAKPPSDKK 418
>gi|242011880|ref|XP_002426671.1| Heterogeneous nuclear ribonucleoprotein Q, putative [Pediculus
humanus corporis]
gi|212510842|gb|EEB13933.1| Heterogeneous nuclear ribonucleoprotein Q, putative [Pediculus
humanus corporis]
Length = 548
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 159/264 (60%), Gaps = 10/264 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV+ G IP D +D+L + G + ++R+M +G+ +GYAFVTF +KE A
Sbjct: 173 PGSGCEVFCGKIPKDMYEDELIPLFEKCGSIWDLRLMMDPMTGQNRGYAFVTFTSKEAAQ 232
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
A+ EL++ E+K GK +K + + RLF+GN+P++ G++++ + +K+ G+ + +
Sbjct: 233 NAVRELDNHEMKPGKPLKVNISVPNLRLFVGNIPKSKGKEEIMEEFSKLAAGLTKVIIYS 292
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
P + +NRGF F+EY +H A +++++ + K+ V WADP+ ++ S+V
Sbjct: 293 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRVKVWGCDIIVDWADPQEEPDAETMSKV 352
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL +D ++++LKE F +GKI +V ++ Y F+HF +R +A+KAL
Sbjct: 353 KVLYVRNLTQDCSEEKLKESFEVYGKIDRV--------KKIKDYAFIHFEDRDNAIKALN 404
Query: 354 NTEKYEIDGQVLDCSLAKPQADQK 377
++ G ++ SLAKP +D+K
Sbjct: 405 ELNGKDLAGACIEVSLAKPPSDKK 428
>gi|195498304|ref|XP_002096465.1| GE25686 [Drosophila yakuba]
gi|194182566|gb|EDW96177.1| GE25686 [Drosophila yakuba]
Length = 747
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 159/265 (60%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 197 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 256
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 257 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 316
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 317 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 376
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 377 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 428
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 429 RGLNGKEIGASNIEVSLAKPPSDKK 453
>gi|307212325|gb|EFN88129.1| Heterogeneous nuclear ribonucleoprotein Q [Harpegnathos saltator]
Length = 649
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 157/264 (59%), Gaps = 10/264 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV+ G IP D +D+L + G++ ++R+M SG +GYAF+TF +E A
Sbjct: 150 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQ 209
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
QA+ EL++ E+K GK +K + + RLF+GN+P++ G++++ K+ G+ + +
Sbjct: 210 QAVRELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILDEFGKLTAGLTEVIIYS 269
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
P + +NRGF F+EY +H A +++++S + K+ V WADP+ + S+V
Sbjct: 270 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQTMSKV 329
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
+ LYV+NL +D ++++LKE F +GKI +V ++ Y F+HF +R +A++A+
Sbjct: 330 RVLYVRNLTQDCSEEKLKESFEQYGKIERV--------KKIKDYAFIHFEDRDNAVRAMN 381
Query: 354 NTEKYEIDGQVLDCSLAKPQADQK 377
E+ G ++ SLAKP +D+K
Sbjct: 382 ELNGKEMGGSHIEVSLAKPPSDKK 405
>gi|391324923|ref|XP_003736991.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Metaseiulus
occidentalis]
Length = 558
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 158/265 (59%), Gaps = 11/265 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV++G IP D +D+L + G++ ++R+M +G +GYAF+TF K+ A
Sbjct: 169 PAAGCEVFVGKIPKDMFEDELIPLFEKCGKIYDLRLMMDPLTGLNRGYAFITFCEKQGAQ 228
Query: 176 QAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ++ E+ KGK I + + HRLF+GN+P+N G D++ + TK PG+ + +
Sbjct: 229 EAVNMFDNHEIRKGKHIGVTISINNHRLFVGNIPKNRGRDELLEEFTKHAPGLTDVIIYT 288
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
P + +NRGF F+EY +H A +++++S + K+ V WADP+ +S S+V
Sbjct: 289 SPDDKKKNRGFCFLEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDSETMSKV 348
Query: 294 KALYVKNLPKDITQDRLKELFAHH-GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K LYV+NL +++T+++LKE+F G++ +V ++ Y FVHF +R A++AL
Sbjct: 349 KVLYVRNLTQEVTEEKLKEVFEEFGGRVERV--------KKIRDYAFVHFEDREDALRAL 400
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ E G ++ SLAKP +D+K
Sbjct: 401 EKNNNREAGGAPMEVSLAKPPSDKK 425
>gi|195353891|ref|XP_002043435.1| GM23135 [Drosophila sechellia]
gi|194127576|gb|EDW49619.1| GM23135 [Drosophila sechellia]
Length = 745
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 159/265 (60%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 380
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 381 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 432
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 433 RGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|442620155|ref|NP_001262780.1| syncrip, isoform N [Drosophila melanogaster]
gi|442620159|ref|NP_001262782.1| syncrip, isoform P [Drosophila melanogaster]
gi|440217682|gb|AGB96160.1| syncrip, isoform N [Drosophila melanogaster]
gi|440217684|gb|AGB96162.1| syncrip, isoform P [Drosophila melanogaster]
Length = 665
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 159/265 (60%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 338
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 339 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 390
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 391 RGLNGKEIGASNIEVSLAKPPSDKK 415
>gi|442620149|ref|NP_001262778.1| syncrip, isoform K [Drosophila melanogaster]
gi|440217679|gb|AGB96158.1| syncrip, isoform K [Drosophila melanogaster]
Length = 753
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 159/265 (60%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 193 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 252
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 253 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 312
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 313 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 372
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 373 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 424
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 425 RGLNGKEIGASNIEVSLAKPPSDKK 449
>gi|24648522|ref|NP_732556.1| syncrip, isoform D [Drosophila melanogaster]
gi|23171809|gb|AAF55805.2| syncrip, isoform D [Drosophila melanogaster]
Length = 707
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 159/265 (60%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 380
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 381 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 432
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 433 RGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|194899678|ref|XP_001979385.1| GG24121 [Drosophila erecta]
gi|190651088|gb|EDV48343.1| GG24121 [Drosophila erecta]
Length = 666
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 159/265 (60%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 164 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 223
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 224 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 283
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 284 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 343
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 344 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 395
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 396 RGLNGKEIGASNIEVSLAKPPSDKK 420
>gi|442620161|ref|NP_001262783.1| syncrip, isoform Q [Drosophila melanogaster]
gi|440217685|gb|AGB96163.1| syncrip, isoform Q [Drosophila melanogaster]
Length = 761
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 159/265 (60%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 380
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 381 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 432
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 433 RGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|161078444|ref|NP_650913.2| syncrip, isoform B [Drosophila melanogaster]
gi|442620151|ref|NP_001097848.2| syncrip, isoform L [Drosophila melanogaster]
gi|158030316|gb|AAN13835.2| syncrip, isoform B [Drosophila melanogaster]
gi|440217680|gb|ABW08710.2| syncrip, isoform L [Drosophila melanogaster]
Length = 711
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 159/265 (60%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 338
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 339 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 390
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 391 RGLNGKEIGASNIEVSLAKPPSDKK 415
>gi|24648520|ref|NP_732555.1| syncrip, isoform E [Drosophila melanogaster]
gi|23171808|gb|AAN13831.1| syncrip, isoform E [Drosophila melanogaster]
Length = 571
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 159/265 (60%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 380
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 381 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 432
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 433 RGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|45551939|ref|NP_732557.2| syncrip, isoform A [Drosophila melanogaster]
gi|45446567|gb|AAN13832.2| syncrip, isoform A [Drosophila melanogaster]
Length = 563
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 159/265 (60%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 193 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 252
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 253 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 312
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 313 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 372
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 373 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 424
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 425 RGLNGKEIGASNIEVSLAKPPSDKK 449
>gi|161078453|ref|NP_001097849.1| syncrip, isoform H [Drosophila melanogaster]
gi|158030319|gb|ABW08711.1| syncrip, isoform H [Drosophila melanogaster]
Length = 534
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 159/265 (60%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 164 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 223
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 224 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 283
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 284 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 343
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 344 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 395
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 396 RGLNGKEIGASNIEVSLAKPPSDKK 420
>gi|24648528|ref|NP_732559.1| syncrip, isoform F [Drosophila melanogaster]
gi|23171812|gb|AAN13834.1| syncrip, isoform F [Drosophila melanogaster]
Length = 529
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 159/265 (60%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 338
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 339 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 390
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 391 RGLNGKEIGASNIEVSLAKPPSDKK 415
>gi|195449649|ref|XP_002072163.1| GK22469 [Drosophila willistoni]
gi|194168248|gb|EDW83149.1| GK22469 [Drosophila willistoni]
Length = 731
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 159/265 (60%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF ++ A
Sbjct: 162 VPGNGCEVFCGKIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNRDAA 221
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 222 INAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 282 SSPDDKKKNRGFCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 341
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 342 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 393
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 394 RGLNGKEIGASNIEVSLAKPPSDKK 418
>gi|440796577|gb|ELR17686.1| RNA recognition motif (RRM)containing protein [Acanthamoeba
castellanii str. Neff]
Length = 868
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 149/271 (54%), Gaps = 11/271 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTE---------VRIMKGKDSGEAKGYAFV 166
PP GSEV++GG+ DA++DD+R IG++ E +R+M+ +G +KGYAFV
Sbjct: 253 PPKGSEVFVGGLHRDATEDDVREVFAKIGDIYEASTIFPPARLRLMRDPKTGASKGYAFV 312
Query: 167 TFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGP- 225
+ A A ++L+ + G+ + +Q LF+G++ ++W + + + + G
Sbjct: 313 RYMEPTFAELAADQLSGYLIMGRPVGVLVSQDNQSLFVGHISQDWSLEQLEAHLKEAGIR 372
Query: 226 GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA 285
GV I DP N +NRGF FIE+ +H A + KM+ F+L V WA+P N
Sbjct: 373 GVDHIIFQHDPMNPTRNRGFVFIEFKSHHEAARAHGKMTRADFRLSGQKVRVDWAEPLNE 432
Query: 286 ES-SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
SQVK++YV NLP ++ + + LF +GKI ++V+ P R + FV++ E
Sbjct: 433 PGEDVMSQVKSIYVANLPLEVDNELITTLFGEYGKIERIVLSKNLPTARRKDFAFVNYEE 492
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375
R++A+KA+ +E+ G+ L +LAKP D
Sbjct: 493 RANALKAIDGKHGFEVQGRTLQVTLAKPVDD 523
>gi|28317322|gb|AAO39657.1| AT01548p, partial [Drosophila melanogaster]
Length = 626
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 159/265 (60%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 120 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 179
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 180 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 239
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 240 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 299
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 300 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 351
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 352 RGLNGKEIGASNIEVSLAKPPSDKK 376
>gi|198450702|ref|XP_002137140.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|198131152|gb|EDY67698.1| GA27045, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 674
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 159/265 (60%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF ++ A
Sbjct: 162 VPGNGCEVFCGKIPKDMYEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNRDAA 221
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 222 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 282 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 341
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+T+++LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 342 VKVLYVRNLTQDVTEEKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 393
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 394 RGLNGKEIGASNIEVSLAKPPSDKK 418
>gi|390177341|ref|XP_003736348.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859003|gb|EIM52421.1| GA27045, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 483
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 159/265 (60%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF ++ A
Sbjct: 162 VPGNGCEVFCGKIPKDMYEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNRDAA 221
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 222 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 281
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 282 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 341
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+T+++LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 342 VKVLYVRNLTQDVTEEKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 393
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 394 RGLNGKEIGASNIEVSLAKPPSDKK 418
>gi|442620157|ref|NP_001262781.1| syncrip, isoform O [Drosophila melanogaster]
gi|440217683|gb|AGB96161.1| syncrip, isoform O [Drosophila melanogaster]
Length = 611
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 159/265 (60%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 260
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 261 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 320
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 321 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 380
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 381 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 432
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 433 RGLNGKEIGASNIEVSLAKPPSDKK 457
>gi|345481380|ref|XP_001602182.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Nasonia vitripennis]
Length = 661
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 156/264 (59%), Gaps = 10/264 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV+ G IP D +D+L + G++ ++R+M +G +GYAF+TF ++ A
Sbjct: 160 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFITFTNRDAAQ 219
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
QA+ EL++ E+K GK +K + + RLF+GN+P++ G++++ K+ G+ + +
Sbjct: 220 QAVRELDNYEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILDEFGKLTAGLTEVIIYS 279
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQV 293
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+V
Sbjct: 280 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRMKVWGCDIIVDWADPQEEPDEQTMSKV 339
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
+ LYV+NL +D ++++LKE F +GKI +V ++ Y F+HF ER A+KA++
Sbjct: 340 RVLYVRNLTQDCSEEKLKECFEQYGKIERV--------KKIKDYAFIHFEERECAVKAMR 391
Query: 354 NTEKYEIDGQVLDCSLAKPQADQK 377
E+ G ++ SLAKP +D+K
Sbjct: 392 ELNGKEMGGSHIEVSLAKPPSDKK 415
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI--TKVVIPPAKPGQERSRYGF 339
P N E ++ +PKD+ +D L LF GKI ++++ P G R Y F
Sbjct: 152 PPNWEGPTPGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMT-GTNRG-YAF 209
Query: 340 VHFAERSSAMKALKNTEKYEID-GQVLDCSLAKP 372
+ F R +A +A++ + YEI G+ L +++ P
Sbjct: 210 ITFTNRDAAQQAVRELDNYEIKPGKSLKVNISVP 243
>gi|442620145|ref|NP_001262776.1| syncrip, isoform I [Drosophila melanogaster]
gi|440217677|gb|AGB96156.1| syncrip, isoform I [Drosophila melanogaster]
Length = 603
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 159/265 (60%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 193 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 252
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 253 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 312
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 313 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 372
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 373 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 424
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 425 RGLNGKEIGASNIEVSLAKPPSDKK 449
>gi|442620163|ref|NP_001262784.1| syncrip, isoform R [Drosophila melanogaster]
gi|440217686|gb|AGB96164.1| syncrip, isoform R [Drosophila melanogaster]
Length = 569
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 159/265 (60%), Gaps = 10/265 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 338
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 339 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 390
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQK 377
+ EI ++ SLAKP +D+K
Sbjct: 391 RGLNGKEIGASNIEVSLAKPPSDKK 415
>gi|157132620|ref|XP_001656100.1| heterogeneous nuclear ribonucleoprotein r [Aedes aegypti]
gi|108881674|gb|EAT45899.1| AAEL002879-PA, partial [Aedes aegypti]
Length = 517
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 158/264 (59%), Gaps = 10/264 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P +G EV+ G IP D +D+L + G++ ++R+M +G +GYAFVTF +++ AS
Sbjct: 126 PGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAAS 185
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
A+ EL++ E+K GK +K + + RLF+GN+P++ G++++ K+ G++ + +
Sbjct: 186 NAVRELDNYEIKSGKCLKINVSVPNLRLFVGNIPKSKGKEEILDEFGKLTAGLMEVIIYS 245
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+V
Sbjct: 246 SPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKV 305
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL +D ++++LKE F GK+ +V ++ Y F+HF +R A+ A+K
Sbjct: 306 KVLYVRNLTQDTSEEKLKESFEQFGKVERV--------KKIKDYAFIHFEDRDHAVNAMK 357
Query: 354 NTEKYEIDGQVLDCSLAKPQADQK 377
+ ++ G L+ SLAKP +D+K
Sbjct: 358 ELDGKDLGGSNLEVSLAKPPSDKK 381
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI--TKVVIPPAKPGQERSRYGF 339
P N E ++ +PKD+ +D L LF GKI ++++ P G R Y F
Sbjct: 118 PPNWEGGTPGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMT-GTNRG-YAF 175
Query: 340 VHFAERSSAMKALKNTEKYEI-DGQVLDCSLAKP 372
V F R +A A++ + YEI G+ L +++ P
Sbjct: 176 VTFTSRDAASNAVRELDNYEIKSGKCLKINVSVP 209
>gi|255069811|gb|ACU00255.1| AT04629p [Drosophila melanogaster]
Length = 489
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 157/263 (59%), Gaps = 10/263 (3%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P +G EV+ G IP D +D+L ++ G + ++R+M +G +GYAFVTF +E A
Sbjct: 229 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 288
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
A+ +L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + +
Sbjct: 289 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 348
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQ 292
P + +NRGF F+EY +H A +++++ + K+ V WADP+ + S+
Sbjct: 349 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSK 408
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A+
Sbjct: 409 VKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAM 460
Query: 353 KNTEKYEIDGQVLDCSLAKPQAD 375
+ EI ++ SLAKP +D
Sbjct: 461 RGLNGKEIGASNIEVSLAKPPSD 483
>gi|321468659|gb|EFX79643.1| hypothetical protein DAPPUDRAFT_319432 [Daphnia pulex]
Length = 695
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 153/262 (58%), Gaps = 10/262 (3%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
+G EV+ G IP D +D+L + G + ++R+M + +GYAFVTF T E A +A
Sbjct: 173 NGCEVFCGKIPRDVYEDELIPLFEKCGTIWDLRLMMDPLTNLNRGYAFVTFTTTEAAQEA 232
Query: 178 IEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDP 236
+ +LN E+K G+ +K + + RLF+GN+P++ G ++ + +K+ G+ + + P
Sbjct: 233 VNQLNDLEMKGGRHLKINVSVPNLRLFVGNIPKSKGNVEIMEEFSKVTAGLAEVIIYSSP 292
Query: 237 QNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKA 295
+ +NRGF F+EY +H A +++++S + K+ V WADP+ ++ S+VK
Sbjct: 293 DDRRKNRGFCFLEYDSHKSASLAKRRLSTGRVKIFGCDIIVDWADPQEEPDNDTMSRVKV 352
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
LYV+NL ++ T+++LKE F HG I +V ++ Y FVHF ER A++A+
Sbjct: 353 LYVRNLTQEFTEEKLKEAFEAHGPIQRV--------KKIKDYAFVHFEERDDAVQAMDAL 404
Query: 356 EKYEIDGQVLDCSLAKPQADQK 377
+ + G L+ SLAKP +D+K
Sbjct: 405 NGHTLYGANLEVSLAKPPSDRK 426
>gi|348531623|ref|XP_003453308.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Oreochromis niloticus]
Length = 535
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 159/266 (59%), Gaps = 11/266 (4%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P G+E+++G IP D +D+L + G + ++R+M SG +GYAFVTF TKE
Sbjct: 155 AQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEA 214
Query: 174 ASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
A QA++ N+ E++ GK I + A +RLF+G++P++ ++ + + K+ G+ + L
Sbjct: 215 AQQAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFAKVTEGLNDVIL 274
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAAS 291
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + +
Sbjct: 275 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIEDPDPEVMA 334
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+VK L+V+NL +T++ L++ F+ HGK+ +V ++ Y F+HF ER SA+KA
Sbjct: 335 KVKVLFVRNLASTVTEEILEKTFSQHGKLERV--------KKLKDYAFIHFEERESAVKA 386
Query: 352 LKNTEKYEIDGQVLDCSLAKPQADQK 377
L + +++G+ ++ AKP DQK
Sbjct: 387 LTDLNGKDLEGEHIEIVFAKP-PDQK 411
>gi|332026895|gb|EGI66996.1| Heterogeneous nuclear ribonucleoprotein Q [Acromyrmex echinatior]
Length = 724
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 158/311 (50%), Gaps = 57/311 (18%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV+ G IP D +D+L + G++ ++R+M SG +GYAF+TF +E A
Sbjct: 156 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQ 215
Query: 176 QAIEELNSCELK------------------------------------------------ 187
QA+ EL++ E+K
Sbjct: 216 QAVRELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKLTGKLNDYEIRK 275
Query: 188 GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAF 247
GKKI + + HRLF+GN+P+N DD+ + TK PG+ + + P + +NRGF F
Sbjct: 276 GKKIGVTVSYNNHRLFVGNIPKNRDRDDLFEEFTKHAPGLTEVIIYSSPDDKKKNRGFCF 335
Query: 248 IEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDIT 306
+EY +H A +++++S + K+ V WADP+ + S+V+ LYV+NL +D +
Sbjct: 336 LEYESHKAASLAKRRLSTGRIKVWGCDIIVDWADPQEEPDEQTMSKVRVLYVRNLTQDCS 395
Query: 307 QDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 366
+++LKE F +GKI +V ++ Y F+HF +R +A+KA+ E+ G ++
Sbjct: 396 EEKLKESFEQYGKIERV--------KKIKDYAFIHFEDRDNAVKAMNELNGKEMGGSHIE 447
Query: 367 CSLAKPQADQK 377
SLAKP +D+K
Sbjct: 448 VSLAKPPSDKK 458
>gi|189234965|ref|XP_973687.2| PREDICTED: similar to CG17838 CG17838-PB [Tribolium castaneum]
Length = 905
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 162/267 (60%), Gaps = 13/267 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV+ G IP D +D+L + G + ++R+M +G +GYAFVTF T++ A
Sbjct: 173 PGAGCEVFCGKIPKDMYEDELIPLFEGCGTIWDLRLMMDPMTGTNRGYAFVTFTTRDAAQ 232
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI---GPGVISIE 231
QA+++L++ E+K GK +K + + RLF+GN+P++ G++++ + K+ G++ +
Sbjct: 233 QAVQKLDNHEIKPGKTLKINISVPNLRLFVGNIPKSKGKEEILEEFGKLTGYTAGLVEVI 292
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAA 290
+ P + +NRGF F+EY +H A +++++ + K+ V WADP+ +
Sbjct: 293 IYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTM 352
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
S+VK LYV+NL ++I++++LKE F +GK+ +V ++ Y F+HF +R +A+K
Sbjct: 353 SKVKVLYVRNLTQEISEEKLKEAFEAYGKVERV--------KKIKDYAFIHFEDRENAVK 404
Query: 351 ALKNTEKYEIDGQVLDCSLAKPQADQK 377
A++ + E+ G ++ SLAKP +D+K
Sbjct: 405 AMEELDGKEMGGSNIEVSLAKPPSDKK 431
>gi|301608798|ref|XP_002933974.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Xenopus
(Silurana) tropicalis]
Length = 770
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 165/287 (57%), Gaps = 11/287 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 305 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 364
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 365 EAVKLYNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 424
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 425 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 484
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 485 KVLFVRNLANTVTEEILEKAFGQFGKLERV--------KKLKDYAFIHFDERVGAVKAME 536
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYG 400
E++G+ ++ AKP DQK +++A N Y + YG
Sbjct: 537 EMNGKELEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDEYYYYG 582
>gi|47212367|emb|CAF89932.1| unnamed protein product [Tetraodon nigroviridis]
Length = 636
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 162/266 (60%), Gaps = 11/266 (4%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A PP G+E+++G IP D +D+L + G + ++R+M SG +GYAFVTF +KE
Sbjct: 156 AQPPVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEA 215
Query: 174 ASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
A +A++ N+ E++ GK+I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 216 AQEAVKLCNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVIL 275
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAAS 291
PQ+ ++NRGF F+EY +H A +R+++ + K K+ N TV WADP + + +
Sbjct: 276 YLQPQDKSKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNMVTVEWADPMEDPDPEVMA 335
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+VK L+V+NL +T++ L++ F+ +G + +V ++ Y F+HF ER A+KA
Sbjct: 336 KVKVLFVRNLANSVTEEILEKAFSEYGNLERV--------KKLKDYAFIHFEERDGAVKA 387
Query: 352 LKNTEKYEIDGQVLDCSLAKPQADQK 377
L+ E++G+ ++ AKP DQK
Sbjct: 388 LEELNGKELEGEPIEIVFAKP-PDQK 412
>gi|171846506|gb|AAI61767.1| syncrip protein [Xenopus (Silurana) tropicalis]
Length = 638
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 165/287 (57%), Gaps = 11/287 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 173 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 232
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 233 EAVKLYNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 292
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 293 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 352
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 353 KVLFVRNLANTVTEEILEKAFGQFGKLERV--------KKLKDYAFIHFDERVGAVKAME 404
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYG 400
E++G+ ++ AKP DQK +++A N Y + YG
Sbjct: 405 EMNGKELEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDEYYYYG 450
>gi|194216236|ref|XP_001915171.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Equus caballus]
Length = 562
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 167/288 (57%), Gaps = 11/288 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGM 401
+++G+ ++ AKP DQK +++A N Y + YG+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGL 436
>gi|432936836|ref|XP_004082303.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Oryzias
latipes]
Length = 542
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 166/287 (57%), Gaps = 11/287 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M SG +GYAFVTF +KE A
Sbjct: 158 PTIGTEIFVGKIPRDLFEDELVPLFERAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
QA++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 QAVKLCNNSEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIIEEFSKVTEGLNDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER SA+KAL
Sbjct: 338 KVLFVRNLASAVTEELLEKTFSQFGKLERV--------KKLKDYAFIHFEERDSAVKALG 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYG 400
+ +++G+ ++ AKP DQK +++A Y + YG
Sbjct: 390 DLNGKDLEGEHIEIVFAKP-PDQKRKERKAQRQAAKTQMYDEYYYYG 435
>gi|144952800|gb|ABP04054.1| RNA-binding protein [Pinctada fucata]
Length = 624
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 159/264 (60%), Gaps = 11/264 (4%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
P GSEV+ G IP D +D+L + G++ ++R+M +G +GY F+TF K A +
Sbjct: 158 PSGSEVFCGKIPKDVFEDELIPLFEKCGKIWDLRLMMDPMTGFNRGYCFITFCDKPGALE 217
Query: 177 AIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
A+++L++ ++K GK IK + + A RLF+GN+P++ +D++ + +K + + + +
Sbjct: 218 AVKQLDNYQIKPGKSIKVNISVANQRLFVGNIPKSKSKDEIMEEFSKKTEDLTDVIIYRS 277
Query: 236 PQNANQ-NRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ NQ NRGFAF+EY +H A +++K+S+ + K+ V WADP + +S S+V
Sbjct: 278 AEKENQKNRGFAFLEYESHKAASTAKRKLSSGRTKVWGCDVIVDWADPIDDPDSDTMSKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL D+T+D LKE F +GK+ +V ++ YGF+HF ER A+KA++
Sbjct: 338 KVLYVRNLTSDVTEDTLKEKFGEYGKVERV--------KKIKDYGFIHFEERDDAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQK 377
++ ++ SLAKP ++ K
Sbjct: 390 GMNGQKLGKLEMEVSLAKPPSENK 413
>gi|410915935|ref|XP_003971442.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Takifugu rubripes]
Length = 637
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 161/264 (60%), Gaps = 11/264 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G+E+++G IP D +D+L + G + ++R+M SG +GYAFVTF +KE A
Sbjct: 162 PPVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEAAQ 221
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK+I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 222 EAVKLCNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVILYL 281
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
PQ+ ++NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 282 QPQDKSKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNMVTVEWADPMEDPDPEVMAKV 341
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ +G + +V ++ Y F+HF ER A+KAL+
Sbjct: 342 KVLFVRNLANSVTEEILEKSFSEYGNLERV--------KKLKDYAFIHFEERDGAVKALE 393
Query: 354 NTEKYEIDGQVLDCSLAKPQADQK 377
E++G+ ++ AKP DQK
Sbjct: 394 EMNGKELEGEPIEIVFAKP-PDQK 416
>gi|194216234|ref|XP_001915169.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Equus caballus]
Length = 623
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 167/288 (57%), Gaps = 11/288 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGM 401
+++G+ ++ AKP DQK +++A N Y + YG+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGL 436
>gi|410898108|ref|XP_003962540.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Takifugu
rubripes]
Length = 539
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 166/289 (57%), Gaps = 11/289 (3%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P G+E+++G IP D +D+L + G + ++R+M SG +GYAFVTF TKE
Sbjct: 156 AQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEA 215
Query: 174 ASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
A QA++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 216 AQQAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIIEEFSKVTEGLNDVIL 275
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAAS 291
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + +
Sbjct: 276 YLQPVDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPLEDPDPEVMA 335
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+VK L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA
Sbjct: 336 KVKVLFVRNLASSVTEELLEKAFSQFGKLERV--------KKLKDYAFIHFEERDGAVKA 387
Query: 352 LKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYG 400
L + +++G+ ++ AKP DQK +++A Y + YG
Sbjct: 388 LADLNGKDLEGEHIEIVFAKP-PDQKRKERKAQRQAAKTHMYDEYYYYG 435
>gi|37681889|gb|AAQ97822.1| NS1-associated protein 1 [Danio rerio]
Length = 558
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 162/287 (56%), Gaps = 11/287 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M SG +GYAFVTF TKE A
Sbjct: 159 PTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQ 218
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ +D + + K+ G+ + L
Sbjct: 219 KAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKVTEGLNDVILYH 278
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 279 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 338
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F GK+ +V ++ Y F+HF ER A+KAL
Sbjct: 339 KVLFVRNLASTVTEELLEKTFCQFGKLERV--------KKLKDYAFIHFEERDGAVKALA 390
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYG 400
+++G+ ++ AKP DQK +++A Y + YG
Sbjct: 391 ELHGKDLEGEPIEIVFAKP-PDQKRKERKAQRQAAKTQMYDEYYYYG 436
>gi|46362505|gb|AAH66570.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 99/307 (32%), Positives = 167/307 (54%), Gaps = 18/307 (5%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M SG +GYAFVTF TKE A
Sbjct: 159 PTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQ 218
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ +D + + K+ G+ + L
Sbjct: 219 KAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKVTEGLNDVILYH 278
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 279 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 338
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F GK+ +V ++ Y F+HF ER A+KAL
Sbjct: 339 KVLFVRNLASTVTEELLEKTFCQFGKLERV--------KKLKDYAFIHFEERDGAVKALA 390
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHLGYGMVGGAY 406
+++G+ ++ AKP DQK +++A Y PPH+
Sbjct: 391 ELHGKDLEGEPIEIVFAKP-PDQKRKERKAQRQAAKTQMYDEYYYYGPPHVHQPTRARGR 449
Query: 407 GALGAGY 413
GA G Y
Sbjct: 450 GARGYSY 456
>gi|301618964|ref|XP_002938875.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Xenopus
(Silurana) tropicalis]
Length = 532
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 165/280 (58%), Gaps = 18/280 (6%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE
Sbjct: 58 AQPGIGTEVFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCNKEA 117
Query: 174 ASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
A +A++ ++ E++ GK I + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 118 AQEAVKLCDNYEIRPGKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 177
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAAS 291
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + +
Sbjct: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEIMA 237
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+VK L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF ER +A++A
Sbjct: 238 KVKVLFVRNLSSTVTEEILEKAFSVFGKLERV--------KKLKDYAFVHFDERDAAVRA 289
Query: 352 LKNTEKYEIDGQVLDCSLAKP--------QADQKTSGGSN 383
+ E++G+ ++ LAKP QA ++ S GS+
Sbjct: 290 MDEMNGTELEGEEIEIVLAKPPDKKRKERQAARQASRGSS 329
>gi|89272515|emb|CAJ81560.1| heterogeneous nuclear ribonucleoprotein R [Xenopus (Silurana)
tropicalis]
Length = 535
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 165/280 (58%), Gaps = 18/280 (6%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE
Sbjct: 61 AQPGIGTEVFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCNKEA 120
Query: 174 ASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
A +A++ ++ E++ GK I + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 121 AQEAVKLCDNYEIRPGKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 180
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAAS 291
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + +
Sbjct: 181 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEIMA 240
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+VK L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF ER +A++A
Sbjct: 241 KVKVLFVRNLSSTVTEEILEKAFSVFGKLERV--------KKLKDYAFVHFDERDAAVRA 292
Query: 352 LKNTEKYEIDGQVLDCSLAKP--------QADQKTSGGSN 383
+ E++G+ ++ LAKP QA ++ S GS+
Sbjct: 293 MDEMNGTELEGEEIEIVLAKPPDKKRKERQAARQASRGSS 332
>gi|189217790|ref|NP_001121335.1| heterogeneous nuclear ribonucleoprotein R [Xenopus laevis]
gi|171847308|gb|AAI61702.1| LOC100158425 protein [Xenopus laevis]
Length = 511
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 165/280 (58%), Gaps = 18/280 (6%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE
Sbjct: 58 AQPGIGTEVFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCNKEA 117
Query: 174 ASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
A +A++ ++ E++ GK I + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 118 AQEAVKLCDNYEIRTGKHIGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLLDVIL 177
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAAS 291
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + +
Sbjct: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEIMA 237
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+VK L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF ER +A++A
Sbjct: 238 KVKVLFVRNLSSTVTEEILEKAFSVFGKLERV--------KKLKDYAFVHFDERDAAVRA 289
Query: 352 LKNTEKYEIDGQVLDCSLAKP--------QADQKTSGGSN 383
+ E++G+ ++ LAKP QA ++ S GS+
Sbjct: 290 MDEMNGAELEGEEIEIVLAKPPDKKRKERQAARQASRGSS 329
>gi|223648918|gb|ACN11217.1| Heterogeneous nuclear ribonucleoprotein Q [Salmo salar]
Length = 619
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 156/266 (58%), Gaps = 11/266 (4%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P G+E+++G IP D +D+L + G + ++R+M SG +GYAFVTF TKE
Sbjct: 167 AQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEA 226
Query: 174 ASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
AS+A+ N+ E++ GK I + A +RLF+G++P++ ++ + + K+ G+ + L
Sbjct: 227 ASEAVNLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFAKVTEGLNDVIL 286
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAAS 291
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + +
Sbjct: 287 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA 346
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+VK L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF ER +A+KA
Sbjct: 347 KVKVLFVRNLANSVTEEILEKSFSQFGKLERV--------KKLKDYAFVHFDERDAAVKA 398
Query: 352 LKNTEKYEIDGQVLDCSLAKPQADQK 377
L ++G+ +D AKP DQK
Sbjct: 399 LAQMNGKVLEGEHIDIVFAKP-PDQK 423
>gi|149018945|gb|EDL77586.1| rCG25340, isoform CRA_b [Rattus norvegicus]
gi|149018948|gb|EDL77589.1| rCG25340, isoform CRA_b [Rattus norvegicus]
Length = 458
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 162/284 (57%), Gaps = 10/284 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 60 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 119
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 120 EAVKRYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 179
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 239
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 240 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 291
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHL 397
+++G+ ++ AKP ++ + Q + T HL
Sbjct: 292 EMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAGMMITTIMVHL 335
>gi|345326436|ref|XP_003431043.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q
[Ornithorhynchus anatinus]
Length = 562
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|405972362|gb|EKC37135.1| Heterogeneous nuclear ribonucleoprotein Q [Crassostrea gigas]
Length = 628
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 152/264 (57%), Gaps = 10/264 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV+ G IP D +D+L + G++ ++R+M + +GY F+TF TKE A
Sbjct: 154 PPPGCEVFCGKIPKDVFEDELIPLFEKCGKIWDLRLMMDPLTQFNRGYCFITFCTKEGAE 213
Query: 176 QAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
+A + N GK IK + + A RLF+GN+P++ +D++ + +K G++ + + +
Sbjct: 214 EATKLDNYAIKPGKNIKVNISVANQRLFVGNIPKSKSKDEIMEEFSKKTEGLVDVIIYRS 273
Query: 236 PQNANQ-NRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ NQ NRGFAF+EY +H A +++K+S + K+ + V WADP N + S+V
Sbjct: 274 AEKENQKNRGFAFLEYDSHKSASTAKRKLSTGRLKVWNCDVIVDWADPVDNPDDETMSKV 333
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL ++T+D +KE F GKI + ++ YGF+HF +R A+KA++
Sbjct: 334 KVLYVRNLTSEVTEDIMKEKFGEFGKIER--------AKKVKDYGFIHFEDRDDAIKAMQ 385
Query: 354 NTEKYEIDGQVLDCSLAKPQADQK 377
+I ++ SLAKP ++ K
Sbjct: 386 AMNGQKIGKLEIEVSLAKPPSENK 409
>gi|147900289|ref|NP_001084953.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Xenopus
laevis]
gi|47122815|gb|AAH70529.1| MGC78820 protein [Xenopus laevis]
Length = 624
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 155/264 (58%), Gaps = 11/264 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 162 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 221
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 222 EAVKLYNNYEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 281
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + S+V
Sbjct: 282 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMSKV 341
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F GK+ +V ++ Y F+HF ER A+KA+
Sbjct: 342 KVLFVRNLANTVTEEILEKAFGQFGKLERV--------KKLKDYAFIHFDERVGAVKAMD 393
Query: 354 NTEKYEIDGQVLDCSLAKPQADQK 377
E++G+ ++ AKP DQK
Sbjct: 394 EMNGKELEGENIEIVFAKP-PDQK 416
>gi|149018946|gb|EDL77587.1| rCG25340, isoform CRA_c [Rattus norvegicus]
gi|149018949|gb|EDL77590.1| rCG25340, isoform CRA_c [Rattus norvegicus]
Length = 462
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 162/284 (57%), Gaps = 10/284 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 60 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 119
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 120 EAVKRYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 179
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 239
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 240 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 291
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHL 397
+++G+ ++ AKP ++ + Q + T HL
Sbjct: 292 EMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAGMMITTIMVHL 335
>gi|417411732|gb|JAA52293.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 577
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 173 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 232
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 233 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 292
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 293 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 352
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 353 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 404
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 405 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 454
>gi|326916225|ref|XP_003204410.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Meleagris gallopavo]
Length = 562
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|228008293|ref|NP_001153148.1| heterogeneous nuclear ribonucleoprotein Q isoform 5 [Homo sapiens]
gi|390461868|ref|XP_003732753.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Callithrix
jacchus]
gi|119569009|gb|EAW48624.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_c [Homo sapiens]
Length = 561
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|228008400|ref|NP_001153149.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Homo sapiens]
gi|296198708|ref|XP_002746830.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Callithrix jacchus]
gi|301775581|ref|XP_002923211.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Ailuropoda melanoleuca]
gi|332218413|ref|XP_003258350.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778175|ref|XP_003431698.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Canis lupus familiaris]
gi|348578328|ref|XP_003474935.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Cavia porcellus]
gi|358413802|ref|XP_589161.5| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Bos
taurus]
gi|359068803|ref|XP_002690248.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Bos
taurus]
gi|395737455|ref|XP_003776918.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Pongo abelii]
gi|397504632|ref|XP_003822888.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Pan
paniscus]
gi|402867568|ref|XP_003897915.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Papio anubis]
gi|426234728|ref|XP_004011344.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Ovis aries]
gi|119569010|gb|EAW48625.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_d [Homo sapiens]
gi|119569011|gb|EAW48626.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_d [Homo sapiens]
gi|380783245|gb|AFE63498.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|383409779|gb|AFH28103.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|384940996|gb|AFI34103.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
gi|410227734|gb|JAA11086.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410255522|gb|JAA15728.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410304908|gb|JAA31054.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
Length = 562
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|126306127|ref|XP_001362774.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Monodelphis domestica]
Length = 561
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|344264673|ref|XP_003404416.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Loxodonta africana]
Length = 559
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 155 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 214
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 215 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 274
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 275 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 334
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 335 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 386
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 387 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 436
>gi|395857930|ref|XP_003801333.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Otolemur garnettii]
Length = 562
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|410959606|ref|XP_004001668.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q [Felis catus]
Length = 562
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|426353897|ref|XP_004044411.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 562
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|228008396|ref|NP_001153145.1| heterogeneous nuclear ribonucleoprotein Q isoform 2 [Homo sapiens]
gi|332218415|ref|XP_003258351.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778173|ref|XP_003431697.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Canis lupus familiaris]
gi|358413804|ref|XP_003582661.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Bos taurus]
gi|359068807|ref|XP_003586521.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Bos taurus]
gi|426234732|ref|XP_004011346.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Ovis aries]
gi|119569008|gb|EAW48623.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_b [Homo sapiens]
gi|221042908|dbj|BAH13131.1| unnamed protein product [Homo sapiens]
gi|380783243|gb|AFE63497.1| heterogeneous nuclear ribonucleoprotein Q isoform 6 [Macaca
mulatta]
Length = 464
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 60 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 119
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 120 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 179
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 239
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 240 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 291
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 292 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 341
>gi|149637545|ref|XP_001510103.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Ornithorhynchus anatinus]
Length = 623
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|41054427|ref|NP_955973.1| synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
gi|28422490|gb|AAH46902.1| Synaptotagmin binding, cytoplasmic RNA interacting protein, like
[Danio rerio]
Length = 560
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 166/307 (54%), Gaps = 18/307 (5%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M SG +GYAFVTF TKE A
Sbjct: 159 PTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQ 218
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ +D + + K+ G+ + L
Sbjct: 219 KAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKVTEGLNDVILYH 278
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+ Y +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 279 QPDDKKKNRGFCFLGYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 338
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F GK+ +V ++ Y F+HF ER A+KAL
Sbjct: 339 KVLFVRNLASTVTEELLEKTFCQFGKLERV--------KKLKDYAFIHFEERDGAVKALA 390
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHLGYGMVGGAY 406
+++G+ ++ AKP DQK +++A Y PPH+
Sbjct: 391 ELHGKDLEGEPIEIVFAKP-PDQKRKERKAQRQAAKTQMYDEYYYYGPPHVHQPTRARGR 449
Query: 407 GALGAGY 413
GA G Y
Sbjct: 450 GARGYSY 456
>gi|426353899|ref|XP_004044412.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 464
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 60 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 119
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 120 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 179
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 239
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 240 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 291
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 292 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 341
>gi|354466426|ref|XP_003495675.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Cricetulus griseus]
gi|344238401|gb|EGV94504.1| Heterogeneous nuclear ribonucleoprotein Q [Cricetulus griseus]
Length = 562
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|62087776|dbj|BAD92335.1| synaptotagmin binding, cytoplasmic RNA interacting protein variant
[Homo sapiens]
Length = 534
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 130 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 189
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 190 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 249
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 250 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 309
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 310 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 361
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 362 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 411
>gi|29788787|ref|NP_062770.1| heterogeneous nuclear ribonucleoprotein Q isoform 2 [Mus musculus]
gi|26330244|dbj|BAC28852.1| unnamed protein product [Mus musculus]
gi|26346458|dbj|BAC36880.1| unnamed protein product [Mus musculus]
gi|148694591|gb|EDL26538.1| mCG16769, isoform CRA_d [Mus musculus]
Length = 562
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|355722853|gb|AES07708.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Mustela
putorius furo]
Length = 698
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 260 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 319
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 320 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 379
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 380 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 439
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 440 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 491
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 492 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 541
>gi|348578330|ref|XP_003474936.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Cavia porcellus]
Length = 533
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 247
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 248 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 299
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 300 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 349
>gi|6576815|dbj|BAA88342.1| SYNCRIP [Mus musculus]
gi|51329959|gb|AAH80309.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Mus
musculus]
gi|127797499|gb|AAH41148.2| Syncrip protein [Mus musculus]
gi|127801712|gb|AAI08364.2| Syncrip protein [Mus musculus]
Length = 561
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|37589144|gb|AAH58807.1| Syncrip protein, partial [Mus musculus]
Length = 635
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 231 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 290
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 291 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 350
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 351 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 410
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 411 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 462
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 463 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 512
>gi|417412066|gb|JAA52448.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 638
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 173 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 232
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 233 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 292
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 293 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 352
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 353 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 404
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 405 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 454
>gi|383415175|gb|AFH30801.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|384944782|gb|AFI35996.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|410227736|gb|JAA11087.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410255524|gb|JAA15729.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
gi|410304910|gb|JAA31055.1| synaptotagmin binding, cytoplasmic RNA interacting protein [Pan
troglodytes]
Length = 624
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|350578257|ref|XP_001927626.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Sus
scrofa]
Length = 623
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|148694590|gb|EDL26537.1| mCG16769, isoform CRA_c [Mus musculus]
Length = 612
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 209 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 268
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 269 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 328
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 329 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 388
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 389 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 440
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 441 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 490
>gi|228008291|ref|NP_006363.4| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Homo sapiens]
gi|302564259|ref|NP_001180774.1| heterogeneous nuclear ribonucleoprotein Q [Macaca mulatta]
gi|109071945|ref|XP_001089294.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 8
[Macaca mulatta]
gi|291396562|ref|XP_002714605.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Oryctolagus cuniculus]
gi|301775585|ref|XP_002923213.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Ailuropoda melanoleuca]
gi|332218419|ref|XP_003258353.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|345778171|ref|XP_532223.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Canis lupus familiaris]
gi|348578326|ref|XP_003474934.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 1
[Cavia porcellus]
gi|358413806|ref|XP_002705232.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Bos
taurus]
gi|359068810|ref|XP_002690247.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1 [Bos
taurus]
gi|395737457|ref|XP_003776919.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Pongo abelii]
gi|397504636|ref|XP_003822890.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3 [Pan
paniscus]
gi|402867572|ref|XP_003897917.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Papio anubis]
gi|403261187|ref|XP_003923009.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Saimiri
boliviensis boliviensis]
gi|426234730|ref|XP_004011345.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Ovis aries]
gi|92090361|sp|O60506.2|HNRPQ_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Glycine- and tyrosine-rich
RNA-binding protein; Short=GRY-RBP; AltName:
Full=NS1-associated protein 1; AltName:
Full=Synaptotagmin-binding, cytoplasmic RNA-interacting
protein
gi|62897111|dbj|BAD96496.1| synaptotagmin binding, cytoplasmic RNA interacting protein variant
[Homo sapiens]
gi|119569014|gb|EAW48629.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_g [Homo sapiens]
gi|119569015|gb|EAW48630.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_g [Homo sapiens]
gi|261858370|dbj|BAI45707.1| synaptotagmin binding, cytoplasmic RNA interacting protein
[synthetic construct]
gi|281344763|gb|EFB20347.1| hypothetical protein PANDA_012313 [Ailuropoda melanoleuca]
gi|387539924|gb|AFJ70589.1| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Macaca
mulatta]
gi|431838171|gb|ELK00103.1| Heterogeneous nuclear ribonucleoprotein Q [Pteropus alecto]
gi|440903331|gb|ELR54008.1| Heterogeneous nuclear ribonucleoprotein Q [Bos grunniens mutus]
Length = 623
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|395534549|ref|XP_003769303.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Sarcophilus
harrisii]
Length = 605
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|351702127|gb|EHB05046.1| Heterogeneous nuclear ribonucleoprotein Q [Heterocephalus glaber]
Length = 623
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|426353905|ref|XP_004044415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 623
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|444729721|gb|ELW70128.1| Heterogeneous nuclear ribonucleoprotein Q [Tupaia chinensis]
Length = 659
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 194 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 253
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 254 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 313
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 314 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 373
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 374 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 425
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 426 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 475
>gi|114145636|ref|NP_001041381.1| heterogeneous nuclear ribonucleoprotein Q [Rattus norvegicus]
gi|44888314|sp|Q7TP47.1|HNRPQ_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Liver regeneration-related
protein LRRG077; AltName: Full=Synaptotagmin-binding,
cytoplasmic RNA-interacting protein
gi|33086582|gb|AAP92603.1| Ab2-339 [Rattus norvegicus]
Length = 533
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 247
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 248 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 299
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 300 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 349
>gi|33416526|gb|AAH55863.1| Syncrip protein, partial [Mus musculus]
Length = 667
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 202 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 261
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 262 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 321
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 322 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 381
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 382 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 433
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 434 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 483
>gi|344264671|ref|XP_003404415.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Loxodonta africana]
Length = 620
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 155 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 214
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 215 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 274
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 275 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 334
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 335 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 386
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 387 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 436
>gi|126310303|ref|XP_001366745.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Monodelphis domestica]
Length = 623
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|189069313|dbj|BAG36345.1| unnamed protein product [Homo sapiens]
Length = 623
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|291222526|ref|XP_002731265.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Saccoglossus kowalevskii]
Length = 648
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 164/276 (59%), Gaps = 18/276 (6%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
+V++G IP D +D++ + G++ ++R+M SG +GYAFVTF +E A +A+++
Sbjct: 175 QVFVGKIPRDMFEDEIIPLFEKCGKIWDLRLMMDPLSGLNRGYAFVTFCDREGAQEAVKQ 234
Query: 181 LNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
L++ E+ KGK + + A HRLF+G++P+ +D++ + K G+ + + P++
Sbjct: 235 LDNHEIRKGKHLGVCISVANHRLFVGSIPKTKSKDEILEEFNKHVGGLTDVIIYHMPEDR 294
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA-PTVSWADPRNA-ESSAASQVKALY 297
+NRGFAF+ + +H A +R+++ + + K+ N+ TV WADP+ + ++VK LY
Sbjct: 295 KKNRGFAFLHFESHKAASLARRRLMSGRIKVWGNSNVTVDWADPQEEPDEETMAKVKVLY 354
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357
V+NL D +++LKE F G + +V ++ Y FVHF ER +A+KA++
Sbjct: 355 VRNLTPDAEEEKLKEAFQAFGTVERV--------KKLKDYCFVHFEERDAAVKAMEELNG 406
Query: 358 YEIDGQVLDCSLAKPQAD-------QKTSGGSNSQK 386
E++G V+D SLAKP ++ Q+T GG +S +
Sbjct: 407 KEVEGSVVDISLAKPPSENKKKKERQQTRGGRSSNR 442
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 275 PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI--TKVVIPPAKPGQ 332
P W P A S A QV +V +P+D+ +D + LF GKI ++++ P G
Sbjct: 160 PPPDWDGP--APSGDAEQV---FVGKIPRDMFEDEIIPLFEKCGKIWDLRLMMDPL-SGL 213
Query: 333 ERSRYGFVHFAERSSAMKALKNTEKYEI 360
R Y FV F +R A +A+K + +EI
Sbjct: 214 NRG-YAFVTFCDREGAQEAVKQLDNHEI 240
>gi|114145493|ref|NP_062640.2| heterogeneous nuclear ribonucleoprotein Q isoform 1 [Mus musculus]
gi|44888326|sp|Q7TMK9.2|HNRPQ_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein Q;
Short=hnRNP Q; AltName: Full=Glycine- and tyrosine-rich
RNA-binding protein; Short=GRY-RBP; AltName:
Full=NS1-associated protein 1; AltName:
Full=Synaptotagmin-binding, cytoplasmic RNA-interacting
protein; AltName: Full=pp68
gi|148694587|gb|EDL26534.1| mCG16769, isoform CRA_a [Mus musculus]
gi|148694589|gb|EDL26536.1| mCG16769, isoform CRA_a [Mus musculus]
Length = 623
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|5031512|gb|AAD38198.1|AF155568_1 NSAP1 protein [Homo sapiens]
Length = 562
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +++ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSQVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|354466428|ref|XP_003495676.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Cricetulus griseus]
Length = 623
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|327261565|ref|XP_003215600.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Anolis
carolinensis]
Length = 634
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 166/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF KE A
Sbjct: 169 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCNKEAAQ 228
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 229 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 288
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 289 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKV 348
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 349 KVLFVRNLANSVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 400
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
E++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 401 GMNGKELEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 450
>gi|303272115|ref|XP_003055419.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463393|gb|EEH60671.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 291
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 160/295 (54%), Gaps = 34/295 (11%)
Query: 111 ELLALPPHGSEVYLGGIPHDASDDDLRHFC----KSIGEVTEVRIMKGKDSGEAKGYAFV 166
+LL P H E++LGGIP AS+ D+R FC + + + V+++ +G+ +GYAFV
Sbjct: 2 DLLKKPAHSCELFLGGIPKSASEADVRAFCDDGAEGVASPSSVQLVIDTATGQNRGYAFV 61
Query: 167 TFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPG 226
+ ++E A+ A E+LN ++ KKI+ S Q KHR+FIGNV R ++ + + G G
Sbjct: 62 AYPSREDAAAAAEKLNEKAIEDKKIRVSVKQTKHRVFIGNVDRMKTRAEVIQGLRDAGCG 121
Query: 227 VISIELVKDPQNAN-----QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWAD 281
+E ++ P+N N Q +GF F ++YN +CAE + + +S + L T WAD
Sbjct: 122 --GVEKLEMPKNRNPAYPSQTKGFGFADFYNASCAERAMKILSESRLFL-GRPVTARWAD 178
Query: 282 PRNAESSAASQVKALYVKNLPKDITQD-----RLKELFAHHGKITKVVIPPAKPG----Q 332
P+ + S + VK++YV NLP + D +LK LF +G + V + +PG
Sbjct: 179 PKLPDPS--TTVKSVYVGNLPPSLVADEGGEEKLKALFGKYGDVETVFVYKPRPGDASAS 236
Query: 333 ERSRYGFVHFAERSSAMKALKNTEK-----------YEIDGQVLDCSLAKPQADQ 376
+ + FVH+A R SA+ A + ++ EIDG LD ++AKP DQ
Sbjct: 237 AKRNFAFVHYASRESALAAAEAGKRSDDADATPSAPIEIDGCALDVTMAKPMKDQ 291
>gi|15986735|gb|AAL11726.1|AF408434_1 RRM RNA binding protein NSAP1 [Mus musculus]
Length = 558
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 93 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 152
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 153 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 212
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 213 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 272
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 273 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 324
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 325 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 374
>gi|15809590|gb|AAK59705.1| hnRNP Q1 [Homo sapiens]
Length = 561
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 166/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NR F F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRSFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|116283697|gb|AAH24283.1| SYNCRIP protein [Homo sapiens]
Length = 453
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 154/259 (59%), Gaps = 10/259 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 194 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 253
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 254 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 313
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 314 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 373
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 374 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 425
Query: 354 NTEKYEIDGQVLDCSLAKP 372
+++G+ ++ AKP
Sbjct: 426 EMNGKDLEGENIEIVFAKP 444
>gi|345320008|ref|XP_001511604.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R
[Ornithorhynchus anatinus]
Length = 479
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 155/259 (59%), Gaps = 10/259 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L G + ++R+M SG+ +GYAF+TF K+ A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFDKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ ++ E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 392
Query: 354 NTEKYEIDGQVLDCSLAKP 372
E++G+ ++ LAKP
Sbjct: 393 EMNGKELEGEEIEIVLAKP 411
>gi|154757562|gb|AAI51724.1| SYNCRIP protein [Bos taurus]
Length = 456
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 154/259 (59%), Gaps = 10/259 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 198 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 257
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 258 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 317
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 318 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 377
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 378 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 429
Query: 354 NTEKYEIDGQVLDCSLAKP 372
+++G+ ++ AKP
Sbjct: 430 EMNGKDLEGENIEIVFAKP 448
>gi|348518315|ref|XP_003446677.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Oreochromis niloticus]
Length = 629
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 157/264 (59%), Gaps = 11/264 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G+E+++G IP D +D+L + G + ++R+M S +GYAF+TF +KE A
Sbjct: 158 PPVGTEIFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSSLNRGYAFITFCSKEGAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KAL+
Sbjct: 338 KVLFVRNLANGVTEELLEKSFSEFGKLERV--------KKLKDYAFIHFEERDGAVKALE 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQK 377
E++G+ ++ AKP DQK
Sbjct: 390 EMNGKELEGEPIEIVFAKP-PDQK 412
>gi|33874520|gb|AAH15575.1| SYNCRIP protein, partial [Homo sapiens]
Length = 417
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 154/259 (59%), Gaps = 10/259 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKP 372
+++G+ ++ AKP
Sbjct: 390 EMNGKDLEGENIEIVFAKP 408
>gi|3037013|gb|AAC12926.1| Gry-rbp [Homo sapiens]
gi|15809586|gb|AAK59703.1| hnRNP Q3 [Homo sapiens]
Length = 623
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 166/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NR F F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRSFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|127799069|gb|AAH50079.2| Synaptotagmin binding, cytoplasmic RNA interacting protein [Mus
musculus]
Length = 562
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 166/291 (57%), Gaps = 18/291 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+ +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLTMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 338 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 389
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
>gi|156377784|ref|XP_001630826.1| predicted protein [Nematostella vectensis]
gi|156217854|gb|EDO38763.1| predicted protein [Nematostella vectensis]
Length = 587
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 159/274 (58%), Gaps = 11/274 (4%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S+V++G +P D +D+L + G + + R+M SG KG+AF TF K+ A A++
Sbjct: 152 SQVFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVK 211
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
+L++ E++ GK++ + A RLF+G++P+ + ++ + +K+ G+ + +
Sbjct: 212 KLDNKEIRPGKRLGVCISVANSRLFVGSIPKTKSKQEILEEFSKVTNGLDDVIVYLSADQ 271
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN-APTVSWADPRNA-ESSAASQVKAL 296
+NRGFAF+EY +H A +R+++++ + K+ N TV WADP+ + A +VK +
Sbjct: 272 KGKNRGFAFLEYESHQAASLARRRLASGRIKVWGNIVVTVDWADPQEEPDDDAMKKVKVV 331
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
Y++NL IT+++LKE ++ +G + +V ++ Y FVHF ER A+KA++ T+
Sbjct: 332 YLRNLSPSITEEKLKEEYSQYGAVDRV--------KKLKDYAFVHFTERDHALKAIEETD 383
Query: 357 KYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALN 390
E+DG ++ SLAKPQ K S +LN
Sbjct: 384 GKEMDGLKIEASLAKPQPGNKDRQRGQSGFGSLN 417
>gi|9502153|gb|AAF88006.1| contains similarity to Pfam family PF00076 (RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)), score=42.1,
E=1.3e-08, N=1 [Arabidopsis thaliana]
Length = 298
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 119/231 (51%), Gaps = 87/231 (37%)
Query: 133 DDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIK 192
+D + F IG + +IM+ K+ G+ KGY FVTFR K+LA++AI+ LN+
Sbjct: 90 EDQMFKFALLIG-LGRQKIMREKEPGDGKGYPFVTFRCKDLAAEAIDNLNNT-------- 140
Query: 193 CSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN 252
+ ++PQN +NRGFAFIEYYN
Sbjct: 141 ---------------------------------------VFREPQNMGRNRGFAFIEYYN 161
Query: 253 HACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKE 312
H VKALY+KNLP+DITQ+RLK
Sbjct: 162 H---------------------------------------VKALYIKNLPRDITQERLKA 182
Query: 313 LFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 363
LF HHGKI KVVIPPAKPG+E SRYGFVH+AER+S M+ALKNTE+YEIDG
Sbjct: 183 LFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDGH 233
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 48/67 (71%)
Query: 427 GAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGAGSSSSGGRRSTDNGRG 486
G A GGM+M+P++LPDGRI YVLQQPG+ PP S GS SS ++S+DNGRG
Sbjct: 232 GHAAGGMSMMPIMLPDGRIRYVLQQPGLAAMPQPPPRPSPPYRGGSGSSSSKQSSDNGRG 291
Query: 487 RSRYNPY 493
RSRYNPY
Sbjct: 292 RSRYNPY 298
>gi|291396564|ref|XP_002714606.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Oryctolagus cuniculus]
Length = 563
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 164/292 (56%), Gaps = 19/292 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES--SAASQ 292
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP A
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
+K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA+
Sbjct: 338 MKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAM 389
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+ +++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 EEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 440
>gi|47550699|ref|NP_999861.1| heterogeneous nuclear ribonucleoprotein Q [Danio rerio]
gi|34784487|gb|AAH56750.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
gi|46249711|gb|AAH68373.1| Synaptotagmin binding, cytoplasmic RNA interacting protein [Danio
rerio]
Length = 630
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 11/266 (4%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P G+E+++G IP D +D+L + G + ++R+M SG +GYAF+TF TKE
Sbjct: 156 AQPTVGTEIFVGKIPRDLFEDELVPQFEKAGPIWDLRLMMDPLSGLNRGYAFLTFCTKEA 215
Query: 174 ASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
A +A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 216 AQEAVKLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVIL 275
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAAS 291
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + +
Sbjct: 276 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIEDPDPEVMA 335
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+VK L+V+NL +T++ L++ F G + +V ++ Y FVHF +R A+KA
Sbjct: 336 KVKVLFVRNLANSVTEEILEKAFGQFGNLERV--------KKLKDYAFVHFNDRDGAVKA 387
Query: 352 LKNTEKYEIDGQVLDCSLAKPQADQK 377
L E++G+ ++ AKP DQK
Sbjct: 388 LTEMNGKELEGEHIEIVFAKP-PDQK 412
>gi|26347007|dbj|BAC37152.1| unnamed protein product [Mus musculus]
Length = 491
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 153/259 (59%), Gaps = 10/259 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 87 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 146
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 147 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 206
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 207 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 266
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 267 KVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAME 318
Query: 354 NTEKYEIDGQVLDCSLAKP 372
+++G+ ++ A P
Sbjct: 319 EMNGKDLEGENIEIVFANP 337
>gi|359338991|ref|NP_001240700.1| heterogeneous nuclear ribonucleoprotein Q isoform 7 [Homo sapiens]
gi|426353901|ref|XP_004044413.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
gi|441601143|ref|XP_004087662.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|119569007|gb|EAW48622.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_a [Homo sapiens]
Length = 410
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 164/286 (57%), Gaps = 18/286 (6%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A +A++
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 181 LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L P +
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDK 130
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYV 298
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++VK L+V
Sbjct: 131 KKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFV 190
Query: 299 KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY 358
+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 191 RNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGK 242
Query: 359 EIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 243 DLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 287
>gi|301775589|ref|XP_002923215.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 5
[Ailuropoda melanoleuca]
Length = 626
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 167/294 (56%), Gaps = 21/294 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRK---AVTKIGPGVISIE 231
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + VT + G+ +
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTGLWEGLTDVI 277
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAA 290
L P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + +
Sbjct: 278 LYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVM 337
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
++VK L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+K
Sbjct: 338 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVK 389
Query: 351 ALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
A++ +++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 AMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 442
>gi|395857934|ref|XP_003801335.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Otolemur garnettii]
Length = 410
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 164/286 (57%), Gaps = 18/286 (6%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A +A++
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 181 LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L P +
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDK 130
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYV 298
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++VK L+V
Sbjct: 131 KKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFV 190
Query: 299 KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY 358
+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 191 RNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGK 242
Query: 359 EIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 243 DLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 287
>gi|426234734|ref|XP_004011347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Ovis aries]
Length = 410
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 164/286 (57%), Gaps = 18/286 (6%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A +A++
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 181 LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L P +
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDK 130
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYV 298
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++VK L+V
Sbjct: 131 KKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFV 190
Query: 299 KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY 358
+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 191 RNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGK 242
Query: 359 EIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 243 DLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 287
>gi|410911698|ref|XP_003969327.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Takifugu
rubripes]
Length = 629
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 153/259 (59%), Gaps = 10/259 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L +S G + ++R+M SG+ +GYAF+T+ K+ A
Sbjct: 159 PGIGTEVFVGKIPRDLYEDELVPLFESAGAIWDLRLMMDPLSGQNRGYAFITYCNKDDAQ 218
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ ++ E++ GK + + A +RLF+G++P+N + + + K+ G+ + L +
Sbjct: 219 KAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQEVILYQ 278
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 279 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPEVMAKV 338
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ FA GK+ +V ++ Y FVHF ER +A++A+
Sbjct: 339 KVLFVRNLATAVTEELLEKTFAQFGKLERV--------KKLKDYAFVHFEERDAAVRAMD 390
Query: 354 NTEKYEIDGQVLDCSLAKP 372
E+ G+ ++ LAKP
Sbjct: 391 EMNGKEVGGEEIEIVLAKP 409
>gi|47219493|emb|CAG10857.1| unnamed protein product [Tetraodon nigroviridis]
Length = 629
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 153/259 (59%), Gaps = 10/259 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L +S G + ++R+M SG+ +GYAF+T+ K+ A
Sbjct: 159 PGIGTEVFVGKIPRDLYEDELVPLFESAGAIWDLRLMMDPLSGQNRGYAFITYCNKDDAQ 218
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ ++ E++ GK + + A +RLF+G++P+N + + + K+ G+ + L +
Sbjct: 219 KAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQEVILYQ 278
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 279 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPEVMAKV 338
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ FA GK+ +V ++ Y FVHF ER +A++A+
Sbjct: 339 KVLFVRNLATAVTEELLEKTFAQFGKLERV--------KKLKDYAFVHFEERDAAVRAMD 390
Query: 354 NTEKYEIDGQVLDCSLAKP 372
E+ G+ ++ LAKP
Sbjct: 391 EMNGKEVGGEEIEIVLAKP 409
>gi|443733097|gb|ELU17586.1| hypothetical protein CAPTEDRAFT_178834 [Capitella teleta]
Length = 545
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 162/267 (60%), Gaps = 13/267 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV+ G IP D +D+L ++ G + + R+M +G +GYAFVTF T++ A
Sbjct: 169 PGPGHEVFAGKIPKDMFEDELVPLFENCGPIWDFRLMMEPLTGLNRGYAFVTFTTRDAAQ 228
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+++L++ E+K +++K + + A RLF+GN+P++ +++ + +K+ + + +
Sbjct: 229 EAVKQLDNYEIKPTRRLKVNVSVANVRLFVGNIPKSKTREEIIEEFSKLTESLTDVIVYN 288
Query: 235 DPQNA-NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQ 292
+A +NRGFAF+EY +H A +++K+ N + ++ + V WADP+ + S+
Sbjct: 289 VADDAKKKNRGFAFLEYDSHKSASVAKRKLGNGRQRVWNCDIIVDWADPQEEPDEETMSK 348
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LYV+NL +D+T+D+++E F GK+ +V ++ YGFVHF ER A+ A+
Sbjct: 349 VKVLYVRNLKQDVTEDQIREKFEVFGKVERV--------KKIKDYGFVHFEEREHALAAM 400
Query: 353 KNTE-KYEI-DGQVLDCSLAKPQADQK 377
K+ K E+ +G V++ SLAKP + K
Sbjct: 401 KDLNGKQELGEGSVMEISLAKPPTENK 427
>gi|223648796|gb|ACN11156.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 633
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 157/262 (59%), Gaps = 11/262 (4%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG-KDSGEAKGYAFVTFRTKE 172
A P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF K+
Sbjct: 158 AQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLLSGQNRGYAFITFCNKD 217
Query: 173 LASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
A +A++ ++ E++ GK + + A +RLF+G++P+N + + + +K+ G++ +
Sbjct: 218 AALEAVKLCDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRESILEDFSKVTEGLMEVI 277
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN-AESSAA 290
L P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + +
Sbjct: 278 LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVDEPDPEIM 337
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
++VK L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+K
Sbjct: 338 AKVKVLFVRNLATPVTEELLEKTFSQFGKLERV--------KKLKDYAFVHFEDRDAAVK 389
Query: 351 ALKNTEKYEIDGQVLDCSLAKP 372
A++ E++G+ ++ LAKP
Sbjct: 390 AMQEMNCKELEGEEIEIVLAKP 411
>gi|198418309|ref|XP_002123977.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein R
[Ciona intestinalis]
Length = 581
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/340 (30%), Positives = 180/340 (52%), Gaps = 30/340 (8%)
Query: 63 EEEVEEEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEV 122
E++++E +E + + DV G Q+ Y G V + A P G +V
Sbjct: 121 EDKIQELLERTKYSLDVTTG---QRRYGGPPPKDVYDG-------------AEPGTGCQV 164
Query: 123 YLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN 182
++G IP +D+L + G V + R+M SG+ +GY FVT+ KE A++ ++ L+
Sbjct: 165 FVGRIPRFVFEDELVPLLEEAGVVWDFRLMMDPMSGQNRGYGFVTYTNKEAATECVKMLD 224
Query: 183 SCELKGKK-IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQ 241
+ E++ KK + +Q+ RLF+G++P+ +D++ + I G+ + + ++ +
Sbjct: 225 NYEIRPKKFLGVCVSQSNCRLFVGSIPKTKTKDEIFEEFDGITQGLKDVIIYLQTEDKMK 284
Query: 242 NRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS-AASQVKALYVKN 300
NRGF F+EY +H A +R+++S+ K K +N +V WADP S S+VK LY+KN
Sbjct: 285 NRGFCFLEYTDHKAASQARRRLSSVKVKAFNNTVSVDWADPVEEPSDEIMSKVKVLYIKN 344
Query: 301 LPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 360
L T++ + F+ +G++ +V ++ Y FVHF ER +AMKAL+ +
Sbjct: 345 LSMKATEEIVMATFSAYGEVERV--------KKIKDYAFVHFKERDNAMKALEELNGLNL 396
Query: 361 DGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYG 400
+G+ ++ SLAKP D+K +K T+ +GYG
Sbjct: 397 EGEAIEISLAKP-VDKKKKERQMERKMM---THAYGMGYG 432
>gi|26454828|gb|AAH40844.1| SYNCRIP protein [Homo sapiens]
Length = 410
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 163/286 (56%), Gaps = 18/286 (6%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A +A++
Sbjct: 11 QIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 70
Query: 181 LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L P +
Sbjct: 71 YNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDK 130
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYV 298
+NRG F+EY +H A +R+++ + K K+ N TV WADP + + ++VK L+V
Sbjct: 131 KKNRGSCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFV 190
Query: 299 KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY 358
+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 191 RNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGK 242
Query: 359 EIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 243 DLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 287
>gi|348529965|ref|XP_003452482.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Oreochromis
niloticus]
Length = 631
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 152/259 (58%), Gaps = 10/259 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L +S G + ++R+M SG+ +GYAF+T+ K+ A
Sbjct: 161 PGSGTEVFVGKIPRDLYEDELVPLFESAGPIWDLRLMMDPLSGQNRGYAFITYCNKDDAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ ++ E++ GK + + A +RLF+G++P+N + + + K+ G+ + L
Sbjct: 221 KAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQEVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+ L +T++ L++ F+ GK+ +V ++ Y FVHF ER +A+KA++
Sbjct: 341 KVLFVRKLATAVTEELLEKTFSQFGKLERV--------KKLKDYAFVHFEERDAAVKAME 392
Query: 354 NTEKYEIDGQVLDCSLAKP 372
E+ G+ ++ LAKP
Sbjct: 393 EMNGKELGGEEIEIVLAKP 411
>gi|223648358|gb|ACN10937.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 635
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 152/261 (58%), Gaps = 10/261 (3%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF K+
Sbjct: 162 AQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDA 221
Query: 174 ASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
A++A++ ++ E++ GK + + A +RLF+G++P+N + + + K+ G+ + L
Sbjct: 222 AAEAVKLCDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQEVIL 281
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAAS 291
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + +
Sbjct: 282 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPDVMA 341
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+VK L+V+ L +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA
Sbjct: 342 KVKVLFVRKLATPVTEELLEKTFSAFGKLERV--------KKLKDYAFVHFEDRDAAVKA 393
Query: 352 LKNTEKYEIDGQVLDCSLAKP 372
+ E+ G+ ++ LAKP
Sbjct: 394 MSEMNGKELGGEEIEIVLAKP 414
>gi|74194838|dbj|BAE26010.1| unnamed protein product [Mus musculus]
Length = 632
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKRKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
>gi|33859724|ref|NP_083147.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|17066599|gb|AAL35332.1|AF441128_1 heterogeneous nuclear ribonucleoprotein R [Mus musculus]
gi|23273731|gb|AAH38051.1| Heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 632
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
>gi|395821027|ref|XP_003783851.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Otolemur garnettii]
Length = 633
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
>gi|354483012|ref|XP_003503689.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Cricetulus griseus]
gi|344256125|gb|EGW12229.1| Heterogeneous nuclear ribonucleoprotein R [Cricetulus griseus]
Length = 633
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
>gi|62990189|ref|NP_783193.2| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
gi|62471548|gb|AAH93598.1| Heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
>gi|74207436|dbj|BAE30898.1| unnamed protein product [Mus musculus]
Length = 632
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
>gi|5031755|ref|NP_005817.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Homo sapiens]
gi|73950240|ref|XP_852945.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Canis lupus familiaris]
gi|301754932|ref|XP_002913314.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Ailuropoda melanoleuca]
gi|332244972|ref|XP_003271637.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Nomascus leucogenys]
gi|332807931|ref|XP_513191.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
troglodytes]
gi|397478943|ref|XP_003810793.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
paniscus]
gi|402853336|ref|XP_003891352.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Papio anubis]
gi|426328275|ref|XP_004024925.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Gorilla gorilla gorilla]
gi|12230547|sp|O43390.1|HNRPR_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein R;
Short=hnRNP R
gi|2697103|gb|AAC39540.1| heterogeneous nuclear ribonucleoprotein R [Homo sapiens]
gi|119615448|gb|EAW95042.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_c [Homo
sapiens]
gi|168277942|dbj|BAG10949.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|281351549|gb|EFB27133.1| hypothetical protein PANDA_001090 [Ailuropoda melanoleuca]
gi|380784785|gb|AFE64268.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|383408165|gb|AFH27296.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|384939486|gb|AFI33348.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
gi|410224016|gb|JAA09227.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410262100|gb|JAA19016.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301026|gb|JAA29113.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350925|gb|JAA42066.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 633
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
>gi|338722113|ref|XP_001501475.3| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Equus caballus]
gi|344287364|ref|XP_003415423.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Loxodonta
africana]
gi|348571199|ref|XP_003471383.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Cavia
porcellus]
Length = 633
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
>gi|197102464|ref|NP_001126631.1| heterogeneous nuclear ribonucleoprotein R [Pongo abelii]
gi|55732180|emb|CAH92794.1| hypothetical protein [Pongo abelii]
Length = 633
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
>gi|27903509|gb|AAO24773.1| heterogeneous nuclear ribonucleoprotein R [Rattus norvegicus]
Length = 632
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEEAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
>gi|189053709|dbj|BAG35961.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
>gi|335307327|ref|XP_003127745.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sus scrofa]
Length = 589
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
>gi|456753306|gb|JAA74142.1| heterogeneous nuclear ribonucleoprotein R tv2 [Sus scrofa]
Length = 633
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
>gi|431891280|gb|ELK02157.1| Heterogeneous nuclear ribonucleoprotein R [Pteropus alecto]
Length = 633
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
>gi|390465455|ref|XP_002750457.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Callithrix jacchus]
gi|403287392|ref|XP_003934932.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Saimiri boliviensis boliviensis]
Length = 633
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
>gi|149062249|gb|EDM12672.1| rCG47908 [Rattus norvegicus]
Length = 406
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 179
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 239
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 240 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 290
>gi|129277529|ref|NP_001076077.1| heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|126717461|gb|AAI33300.1| HNRNPR protein [Bos taurus]
gi|296489987|tpg|DAA32100.1| TPA: heterogeneous nuclear ribonucleoprotein R [Bos taurus]
gi|440897846|gb|ELR49456.1| Heterogeneous nuclear ribonucleoprotein R [Bos grunniens mutus]
Length = 633
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
>gi|417403514|gb|JAA48557.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 633
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
>gi|395821029|ref|XP_003783852.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Otolemur garnettii]
Length = 532
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 179
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 239
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 240 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 290
>gi|3694986|gb|AAC62511.1| RRM RNA binding protein GRY-RBP [Mus musculus]
Length = 625
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 165/294 (56%), Gaps = 21/294 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEA---KGYAFVTFRTKE 172
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLTGLNRGYAFVTFCTKE 217
Query: 173 LASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
A +A + N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ +
Sbjct: 218 AAQEAAKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVI 277
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAA 290
L P + +NRGF F EY +H A +R+++ + K K+ N TV WADP + +
Sbjct: 278 LYHQPDDKKKNRGFCFQEYEDHKAAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVM 337
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
++VK L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+K
Sbjct: 338 AKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVK 389
Query: 351 ALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
A++ +++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 390 AMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 442
>gi|198430507|ref|XP_002127144.1| PREDICTED: similar to RNA-binding protein 47 (RNA-binding motif
protein 47) [Ciona intestinalis]
Length = 711
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 148/264 (56%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G+EV++G IP D +D+L ++ G + E+R+M D G+ +GYAFV F K A
Sbjct: 108 PPRGAEVFVGKIPRDVFEDELVPVFETAGRIYEMRLMMDFD-GKNRGYAFVMFTAKSDAK 166
Query: 176 QAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
A+++LN+ E+ KG+ + + RLF+G +P+ +DD+ +TK+ GV + +
Sbjct: 167 GAVKKLNNYEIRKGRMLGVCYSVDNCRLFVGGIPKTKKKDDIFAEMTKVTEGVTDVIVYP 226
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P ++ + QV
Sbjct: 227 SASDKTKNRGFAFVEYDSHRAAAMARRKLIPGRIQLWGHPIAVDWAEPEQDVDDEIMGQV 286
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL D T+D L+ +F+ KPG ER + Y FVHF+ R +
Sbjct: 287 KVLYVRNLMLDTTEDTLQNVFSQF-----------KPGSVERVKKIRDYAFVHFSTREAC 335
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A++ ID ++ +LAKP
Sbjct: 336 IEAMEKINGTHIDQAEVEVTLAKP 359
>gi|426221978|ref|XP_004005182.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Ovis aries]
Length = 633
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
>gi|74141454|dbj|BAB27533.3| unnamed protein product [Mus musculus]
Length = 381
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 130 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 189
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 190 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 249
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 250 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 309
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 310 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 360
>gi|397478941|ref|XP_003810792.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
paniscus]
Length = 616
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 156/259 (60%), Gaps = 10/259 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 144 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 203
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 204 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 263
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 264 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 323
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 324 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMD 375
Query: 354 NTEKYEIDGQVLDCSLAKP 372
EI+G+ ++ LAKP
Sbjct: 376 EMNGKEIEGEEIEIVLAKP 394
>gi|13435603|gb|AAH04679.1| Hnrpr protein, partial [Mus musculus]
Length = 601
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 130 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 189
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 190 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 249
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 250 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 309
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 310 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 360
>gi|432944515|ref|XP_004083418.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like, partial
[Oryzias latipes]
Length = 469
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 153/264 (57%), Gaps = 11/264 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M S +GYAFVTF KE A
Sbjct: 165 PTVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLSSLNRGYAFVTFCAKEAAQ 224
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 225 EAVKLCNNYEIRPGKHIGACISVANNRLFVGSIPKSKTKEQIVEEFSKVTDGLNDVILYH 284
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+E+ +H A +R+++ + K K+ TV WADP + + ++V
Sbjct: 285 QPDDKKKNRGFCFLEFEDHKTAAQARRRLMSGKVKVWGILVTVEWADPIEDPDPEVMAKV 344
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KAL
Sbjct: 345 KVLFVRNLANSVTEEILEKSFSAFGKLERV--------KKLKDYAFIHFEEREGAVKALD 396
Query: 354 NTEKYEIDGQVLDCSLAKPQADQK 377
E++G+ ++ AKP DQK
Sbjct: 397 EMNGKELEGEPIEIVFAKP-PDQK 419
>gi|74228775|dbj|BAE21877.1| unnamed protein product [Mus musculus]
Length = 604
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 133 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 192
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 193 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 252
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 253 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 312
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 313 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 363
>gi|390465453|ref|XP_002750458.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Callithrix jacchus]
Length = 532
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 179
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 239
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 240 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 290
>gi|156151392|ref|NP_001095867.1| heterogeneous nuclear ribonucleoprotein R isoform 4 [Homo sapiens]
gi|73950226|ref|XP_535365.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Canis lupus familiaris]
gi|332244970|ref|XP_003271636.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Nomascus leucogenys]
gi|332807929|ref|XP_003307911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1 [Pan
troglodytes]
gi|402853334|ref|XP_003891351.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Papio anubis]
gi|426328273|ref|XP_004024924.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 1
[Gorilla gorilla gorilla]
gi|119615447|gb|EAW95041.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_b [Homo
sapiens]
gi|380784787|gb|AFE64269.1| heterogeneous nuclear ribonucleoprotein R isoform 2 [Macaca
mulatta]
Length = 532
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 179
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 180 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 239
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 240 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 290
>gi|74219109|dbj|BAE26696.1| unnamed protein product [Mus musculus]
Length = 610
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 139 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 198
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 199 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 258
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 259 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 318
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 319 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 369
>gi|111494085|gb|AAI10390.1| HNRPR protein [Homo sapiens]
Length = 607
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 135 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 194
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 195 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 254
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 255 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 314
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 315 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 365
>gi|363733760|ref|XP_003641292.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gallus gallus]
Length = 597
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 146/261 (55%), Gaps = 13/261 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L +S+G + E+R+M D G+ +GYAFV + K A
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 294 KALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
K LYV+NL + T+D +K++F G + +V ++ Y FVHF R A+ A
Sbjct: 246 KILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFTTREDAIHA 297
Query: 352 LKNTEKYEIDGQVLDCSLAKP 372
+ N E++G L+ +LAKP
Sbjct: 298 MNNLNGVELEGSCLEVTLAKP 318
>gi|326919263|ref|XP_003205901.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Meleagris
gallopavo]
Length = 598
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 146/261 (55%), Gaps = 13/261 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L +S+G + E+R+M D G+ +GYAFV + K A
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 294 KALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
K LYV+NL + T+D +K++F G + +V ++ Y FVHF R A+ A
Sbjct: 246 KILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFTTREDAIHA 297
Query: 352 LKNTEKYEIDGQVLDCSLAKP 372
+ N E++G L+ +LAKP
Sbjct: 298 MNNLNGVELEGSCLEVTLAKP 318
>gi|224049976|ref|XP_002187774.1| PREDICTED: RNA-binding protein 47 isoform 1 [Taeniopygia guttata]
Length = 594
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 146/261 (55%), Gaps = 13/261 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L +S+G + E+R+M D G+ +GYAFV + K A
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 294 KALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
K LYV+NL + T+D +K++F G + +V ++ Y FVHF R A+ A
Sbjct: 246 KILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFTTREDAIHA 297
Query: 352 LKNTEKYEIDGQVLDCSLAKP 372
+ N E++G L+ +LAKP
Sbjct: 298 MNNLNGVELEGSCLEVTLAKP 318
>gi|432918730|ref|XP_004079638.1| PREDICTED: probable RNA-binding protein 46-like [Oryzias latipes]
Length = 591
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 152/263 (57%), Gaps = 13/263 (4%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G EV++G +P D +D+L +S G + E R+M + SGE +GYAFV + ++E A +A
Sbjct: 71 RGCEVFVGKVPRDMYEDELVPLFESAGRIYEFRLMM-EFSGENRGYAFVMYTSREEAVRA 129
Query: 178 IEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDP 236
I+ L+ E++ G+ I + RLFIG++PR+ ++++ + + K+ GV+ + +
Sbjct: 130 IQMLDGYEVRPGRFIGVCVSLDNCRLFIGSIPRDRRKEEILEEMRKVTDGVVDVIVYPSS 189
Query: 237 QNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKA 295
+ N+NRGFAF+EY +H A +R+K+ F+L + V WA+P ++ E A +V+
Sbjct: 190 SDRNRNRGFAFVEYESHKTAAMARRKLIPGTFQLWGHPIQVDWAEPEKDMEEEAMQRVRV 249
Query: 296 LYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
LYV+NL D T++ L+ F+ G + +V ++ + Y FVHF RS A+ L
Sbjct: 250 LYVRNLMLDTTEETLRREFSRFKPGSVERV--------KKLTDYAFVHFRSRSEALATLA 301
Query: 354 NTEKYEIDGQVLDCSLAKPQADQ 376
+IDG ++ SLAKP ++
Sbjct: 302 VMNGVQIDGTTVEVSLAKPTGNK 324
>gi|327288394|ref|XP_003228911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Anolis
carolinensis]
Length = 632
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 156/259 (60%), Gaps = 10/259 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ ++ E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMN 392
Query: 354 NTEKYEIDGQVLDCSLAKP 372
EI+G+ ++ LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|339234953|ref|XP_003379031.1| RNA-binding protein 47 [Trichinella spiralis]
gi|316978381|gb|EFV61375.1| RNA-binding protein 47 [Trichinella spiralis]
Length = 567
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 153/276 (55%), Gaps = 14/276 (5%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G +P D ++ +L + +G + E+R+M + G +GYAFVTF KE A
Sbjct: 80 PPKGCEVFVGKLPRDVTEQELVPVFERVGRIYEMRMMMDFN-GSNRGYAFVTFCDKEQAK 138
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A ++LN E++ G+ I + RL++ +PR+ +D+R + ++ GV+ + L
Sbjct: 139 RACQQLNGFEIRRGRFIGVLKSVDNCRLYVSGIPRDKSREDVRSEIARLTDGVVDVILYP 198
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ ++NRGFAFIEY +H A +R+K++ + L N TV WA+P R+ + +QV
Sbjct: 199 SAMDKSKNRGFAFIEYESHRSAAMARRKLAPNRLTLWGNEITVDWAEPERDVDEETMAQV 258
Query: 294 KALYVKNLPKDITQDRLKEL---FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
K LYV+NL T++ L+E+ + G + +V ++ Y FVHF+ R A++
Sbjct: 259 KKLYVRNLMMHTTEEHLREVVEAISGTGTVERV--------KKIRDYAFVHFSRREDAIR 310
Query: 351 ALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQK 386
+ ++DG V++ LAKP N+QK
Sbjct: 311 VQEALNGQDLDGSVVEVKLAKPPDRSIMRFVKNAQK 346
>gi|432881549|ref|XP_004073835.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Oryzias
latipes]
Length = 633
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 152/259 (58%), Gaps = 10/259 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L +S G + ++R+M SG+ +GYAF+T+ K+ A
Sbjct: 163 PGIGTEVFVGKIPRDLYEDELVPLFESAGPIWDLRLMMDPLSGQNRGYAFITYCNKDDAQ 222
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ ++ E++ GK + + A +RLF+G++P+N + + + K+ G+ + L
Sbjct: 223 KAVKLCDNHEIRPGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQDVILYH 282
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 283 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPEVMAKV 342
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+ L +T++ L++ F+ GK+ +V ++ Y FVHF ER +A++A++
Sbjct: 343 KVLFVRKLATAVTEELLEKTFSQFGKLERV--------KKLKDYAFVHFEERDAAVQAME 394
Query: 354 NTEKYEIDGQVLDCSLAKP 372
E+ G+ ++ LAKP
Sbjct: 395 GMNGKELGGEEIEIVLAKP 413
>gi|324504723|gb|ADY42035.1| Heterogeneous nuclear ribonucleoprotein R [Ascaris suum]
Length = 619
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 157/265 (59%), Gaps = 12/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G E+Y+G IP++ +D L + +G++ ++R+M +G+ +GYAF+TF K A++A
Sbjct: 197 GHEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAA 256
Query: 179 EELNSCE-LKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
++ + E L GK +K + + A RLFIGN+P++ ++++ + GV+ + P
Sbjct: 257 KKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVVDCIIYTSPD 316
Query: 238 -NAN-QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVK 294
AN +NRGF F+++ +H A +++K+ K + ++ V WA+ + + S+VK
Sbjct: 317 AGANRKNRGFCFLDFCDHKAASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEETMSKVK 376
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
LYV+NL + +T+++LKE+FA HG++ + ++ Y F+HF ER A+KA++
Sbjct: 377 VLYVRNLKEAVTEEQLKEMFAAHGEVERA--------KKIRDYAFIHFKEREPALKAMEA 428
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
++G ++ SLAKPQ D+K +
Sbjct: 429 LNGTVLEGIAIEISLAKPQGDKKKT 453
>gi|388514909|gb|AFK45516.1| unknown [Lotus japonicus]
Length = 150
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/150 (70%), Positives = 117/150 (78%), Gaps = 5/150 (3%)
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGA 408
MKALKNTEKYEIDG+ L+CSLAKPQADQ++SG SNSQK + PTYP LGYGMVGGAYG
Sbjct: 1 MKALKNTEKYEIDGKNLECSLAKPQADQRSSGTSNSQKPVVLPTYPHRLGYGMVGGAYGG 60
Query: 409 LGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPG-----VQQHNPPPQP 463
+GAGY AGFAQP++YG GA P GM M+PMLLPDGRIGYV+QQPG +QQH P P
Sbjct: 61 IGAGYGAAGFAQPLMYGMGANPAGMPMMPMLLPDGRIGYVVQQPGLQQPSLQQHAPSPVS 120
Query: 464 RSGRGGAGSSSSGGRRSTDNGRGRSRYNPY 493
R GR G SSSGG+R DN RG RYNPY
Sbjct: 121 RHGRRSGGGSSSGGKRGNDNNRGHRRYNPY 150
>gi|395521675|ref|XP_003764941.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Sarcophilus
harrisii]
Length = 563
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF K+ A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
>gi|126328455|ref|XP_001366091.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Monodelphis
domestica]
Length = 633
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 145/239 (60%), Gaps = 10/239 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF K+ A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 391
>gi|118090545|ref|XP_001232620.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gallus gallus]
Length = 528
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 146/261 (55%), Gaps = 13/261 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L +S+G + E+R+M D G+ +GYAFV + K A
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 294 KALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
K LYV+NL + T+D +K++F G + +V ++ Y FVHF R A+ A
Sbjct: 246 KILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFTTREDAIHA 297
Query: 352 LKNTEKYEIDGQVLDCSLAKP 372
+ N E++G L+ +LAKP
Sbjct: 298 MNNLNGVELEGSCLEVTLAKP 318
>gi|149610011|ref|XP_001505728.1| PREDICTED: RNA-binding protein 47 isoform 1 [Ornithorhynchus
anatinus]
Length = 591
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 158/289 (54%), Gaps = 20/289 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L +S+G + E+R+M D G+ +GYAFVT+ K A
Sbjct: 72 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVTYTHKHEAK 130
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + + RLFIG +P+ +++ + ++K+ GV+ + +
Sbjct: 131 RAVRELNNYEVRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 190
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 191 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 250
Query: 294 KALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
K LYV+NL + T++ +K+ F G + +V ++ Y FVHF R A++A
Sbjct: 251 KILYVRNLMIETTEEAIKKSFGQFNPGCVERV--------KKIRDYAFVHFVSREDAVRA 302
Query: 352 LKNTEKYEIDGQVLDCSLAKP-------QADQKTSGGSNSQKSALNPTY 393
+ + E++G L+ +LAKP + + GG+ S+ + P Y
Sbjct: 303 MNSLNGTELEGSCLEVTLAKPVDKEQYTRYQKAAKGGAASEVTPQQPNY 351
>gi|149610013|ref|XP_001505770.1| PREDICTED: RNA-binding protein 47 isoform 2 [Ornithorhynchus
anatinus]
Length = 522
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 165/310 (53%), Gaps = 27/310 (8%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L +S+G + E+R+M D G+ +GYAFVT+ K A
Sbjct: 72 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVTYTHKHEAK 130
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + + RLFIG +P+ +++ + ++K+ GV+ + +
Sbjct: 131 RAVRELNNYEVRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 190
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 191 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 250
Query: 294 KALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
K LYV+NL + T++ +K+ F G + +V ++ Y FVHF R A++A
Sbjct: 251 KILYVRNLMIETTEEAIKKSFGQFNPGCVERV--------KKIRDYAFVHFVSREDAVRA 302
Query: 352 LKNTEKYEIDGQVLDCSLAKP-------QADQKTSGGSNSQKSALNPTY-----PPHLGY 399
+ + E++G L+ +LAKP + + GG+ S+ + P Y P L Y
Sbjct: 303 MNSLNGTELEGSCLEVTLAKPVDKEQYTRYQKAAKGGAASEVTPQQPNYVYPCDPYTLAY 362
Query: 400 GMVGGAYGAL 409
G Y AL
Sbjct: 363 --YGYPYSAL 370
>gi|326919265|ref|XP_003205902.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Meleagris
gallopavo]
Length = 529
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 146/261 (55%), Gaps = 13/261 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L +S+G + E+R+M D G+ +GYAFV + K A
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 294 KALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
K LYV+NL + T+D +K++F G + +V ++ Y FVHF R A+ A
Sbjct: 246 KILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFTTREDAIHA 297
Query: 352 LKNTEKYEIDGQVLDCSLAKP 372
+ N E++G L+ +LAKP
Sbjct: 298 MNNLNGVELEGSCLEVTLAKP 318
>gi|132626770|ref|NP_001006309.3| heterogeneous nuclear ribonucleoprotein R [Gallus gallus]
gi|326932873|ref|XP_003212536.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like
[Meleagris gallopavo]
Length = 633
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 156/259 (60%), Gaps = 10/259 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF +K+ A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ ++ E++ GK + + A +RLF+G++P+N ++++ + K+ G++ + L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFNKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMN 392
Query: 354 NTEKYEIDGQVLDCSLAKP 372
EI+G+ ++ LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|195997511|ref|XP_002108624.1| hypothetical protein TRIADDRAFT_689 [Trichoplax adhaerens]
gi|190589400|gb|EDV29422.1| hypothetical protein TRIADDRAFT_689, partial [Trichoplax adhaerens]
Length = 299
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 143/260 (55%), Gaps = 12/260 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L + IG + EVR+M SG +GYAFV +++K A
Sbjct: 43 PPRGCEVFIGKIPRDLFEDELVPVFEKIGPIYEVRLMMDF-SGNNRGYAFVVYQSKSAAR 101
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
Q I++LN+ E++ G+ I ++ RLFIG +P+ +++R + KI V+ + +
Sbjct: 102 QCIKQLNNYEIRQGRMIGVCSSVDNCRLFIGGIPKTIKREEIRSEMAKITEHVVDVIVYP 161
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQK-MSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
+ +NRGFAF+EY NH A +R+K M+N +L + V WA+P + Q
Sbjct: 162 SASDKTKNRGFAFVEYTNHRAAAMARRKLMNNNNVELWGHKIAVDWAEPEIEVDEEIMDQ 221
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK +YV+NL T++ L+E+F ++ +V ++ Y F+HF + A A+
Sbjct: 222 VKIVYVRNLLLSTTEESLREIFQSIARVERV--------KKIRDYAFIHFTSKEDAHMAI 273
Query: 353 KNTEKYEIDGQVLDCSLAKP 372
IDG ++ +LAKP
Sbjct: 274 TLKNGQIIDGSTVEVTLAKP 293
>gi|449267775|gb|EMC78677.1| Heterogeneous nuclear ribonucleoprotein R [Columba livia]
Length = 633
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 156/259 (60%), Gaps = 10/259 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF +K+ A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ ++ E++ GK + + A +RLF+G++P+N ++++ + K+ G++ + L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFGKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMN 392
Query: 354 NTEKYEIDGQVLDCSLAKP 372
EI+G+ ++ LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|327273505|ref|XP_003221521.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 47-like [Anolis
carolinensis]
Length = 603
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 148/261 (56%), Gaps = 13/261 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L ++ G + E+R+M D G+ +GYAFV + K A
Sbjct: 69 PPRGCEVFVGKIPRDVYEDELVPVFETAGRIYEMRLMMDFD-GKNRGYAFVMYTQKYEAK 127
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ELN+ E++ G+ + + RLFIG +P+ +++ + ++K+ GV+ + +
Sbjct: 128 RAVKELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 187
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 188 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 247
Query: 294 KALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
K LYV+NL + T+D +K++F G + +V ++ Y FVHF R A++A
Sbjct: 248 KILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVQA 299
Query: 352 LKNTEKYEIDGQVLDCSLAKP 372
+ N E++G L+ +LAKP
Sbjct: 300 MNNLNNTELEGSCLEVTLAKP 320
>gi|223649064|gb|ACN11290.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 631
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 151/259 (58%), Gaps = 10/259 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF K+ A+
Sbjct: 163 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKDAAA 222
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ ++ E++ GK + + A +RLF+G++P+N + + + K+ G+ + L
Sbjct: 223 EAVKLCDNYEIRSGKYLGVCISVANNRLFVGSIPKNKTRESILEDFGKVTEGLQEVILYH 282
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 283 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNPVTVEWADPVAEPDPDVMAKV 342
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+ L +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 343 KVLFVRKLAIPVTEELLEKTFSAFGKLERV--------KKLKDYAFVHFEDRDAAVKAMA 394
Query: 354 NTEKYEIDGQVLDCSLAKP 372
E+ G+ ++ LAKP
Sbjct: 395 EMNGKELGGEGIEIVLAKP 413
>gi|449488926|ref|XP_004174439.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein R-like [Taeniopygia guttata]
Length = 517
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 156/259 (60%), Gaps = 10/259 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF +K+ A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ ++ E++ GK + + A +RLF+G++P+N ++++ + K+ G++ + L
Sbjct: 221 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFGKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++V
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 340
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 341 KVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMN 392
Query: 354 NTEKYEIDGQVLDCSLAKP 372
EI+G+ ++ LAKP
Sbjct: 393 EMNGKEIEGEEIEIVLAKP 411
>gi|348529370|ref|XP_003452186.1| PREDICTED: RNA-binding protein 47-like [Oreochromis niloticus]
Length = 607
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 156/281 (55%), Gaps = 18/281 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G E+++G IP D +D+L +S+G + E+R+M D G+ +GYAFV + K A
Sbjct: 81 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTEKHEAK 139
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + ++ RLFIG +P+ +++ + V+K+ GV+ + +
Sbjct: 140 RAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVLDVIVYA 199
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 200 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 259
Query: 294 KALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
K LYV+NL + +++ ++++F+ G + +V ++ Y FVHF R A+ A
Sbjct: 260 KILYVRNLMMETSEEAIRQIFSQFNPGCVERV--------KKIRDYAFVHFTSRDDAVLA 311
Query: 352 LKNTEKYEIDGQVLDCSLAKP-----QADQKTSGGSNSQKS 387
+ N E++G ++ +LAKP + QK S G S S
Sbjct: 312 MDNLNGTEVEGSCIEVTLAKPVDKEQYSRQKASKGGASATS 352
>gi|156399642|ref|XP_001638610.1| predicted protein [Nematostella vectensis]
gi|156225732|gb|EDO46547.1| predicted protein [Nematostella vectensis]
Length = 411
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 149/260 (57%), Gaps = 11/260 (4%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+PP G EV++G IP D +D+L ++ G + EVR+M + G+ +GYAFV + +K+ A
Sbjct: 52 IPPRGCEVFVGKIPRDLYEDELVPVFETAGPIYEVRLMMDFN-GQNRGYAFVVYTSKDDA 110
Query: 175 SQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
+ ++ LN+ E+ KGK I ++ RLF+G +P+ +D++ V+K+ V+ + +
Sbjct: 111 KRCVKTLNNYEIRKGKCIGVCSSVDNCRLFVGGIPKKVKKDEIMAEVSKVTDNVVDVIVY 170
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQ 292
Q+ +NRGFAF+EY +H A +R+K+ K +L + V WA+P + + Q
Sbjct: 171 PSAQDKTKNRGFAFVEYISHRDAAMARRKLMTGKIQLWGHQIAVDWAEPEQEVDQEIMDQ 230
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LY +NL T++ +++ F+ G++ +V ++ Y F+HF + A A+
Sbjct: 231 VKVLYARNLLLSTTEETIEQAFSKFGEVERV--------KKIKDYCFIHFRTKEQARDAM 282
Query: 353 KNTEKYEIDGQVLDCSLAKP 372
+ + E+DG ++ +LAKP
Sbjct: 283 EAMNETELDGNEIEVTLAKP 302
>gi|213983189|ref|NP_001135499.1| RNA binding motif protein 47 [Xenopus (Silurana) tropicalis]
gi|195539941|gb|AAI67901.1| Unknown (protein for MGC:135580) [Xenopus (Silurana) tropicalis]
Length = 412
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 160/293 (54%), Gaps = 20/293 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L +S G + E+R+M D G+ +GYAFV F K A
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESAGRIFEMRLMMDFD-GKNRGYAFVMFTKKHEAK 125
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
QA+ ELN+ E++ G+ + + RLFIG +P+ +++ + ++K+ GV+ + +
Sbjct: 126 QAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 294 KALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
K LYV+NL + ++D +K++F G + +V ++ Y FVHF+ R A+++
Sbjct: 246 KILYVRNLMIETSEDTIKKIFGQFNPGCVERV--------KKIRDYAFVHFSSREDAVQS 297
Query: 352 LKNTEKYEIDGQVLDCSLAKP-------QADQKTSGGSNSQKSALNPTYPPHL 397
++ E++G ++ +LAKP + + GG+ + +A T P ++
Sbjct: 298 MRKLNGTELEGSCIEVTLAKPVDKEQYTRYQKAAKGGAPATATATEVTQPNYI 350
>gi|72086008|ref|XP_793277.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like
[Strongylocentrotus purpuratus]
Length = 638
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 162/275 (58%), Gaps = 12/275 (4%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K + E L P GSE+++G IP + +D++ + GEV ++R+M +G+ +GYAF
Sbjct: 157 KPEDCETLPPPIQGSEIFVGKIPKEMYEDEIIPLLEQCGEVHDLRLMMDPLTGQNRGYAF 216
Query: 166 VTFRTKELASQAIEELNSCELKGK-KIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG 224
F + E A +A+++LN ++K ++ + + K RL++G++P+N +D++ + K+
Sbjct: 217 AAFTSIEGAREAVKQLNGHKIKDNWQLSVNVSVPKSRLYVGSIPKNKTKDEILEEFAKVE 276
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT-VSWADPR 283
G++ + ++ ++ +NRGFAF+E+ +H A +++K+++ + K+ + V WADP
Sbjct: 277 KGLLDV-IIYKTEDKMRNRGFAFLEFDSHKAAASAKRKLASGRIKVWNQINVNVDWADPV 335
Query: 284 -NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHF 342
+S S+VK +Y++NL + T+ ++KE F +G++ K ++ Y FVHF
Sbjct: 336 IEPDSDTMSKVKVVYIRNLSTETTEVKIKEDFGQYGEVEK--------AKKMKDYCFVHF 387
Query: 343 AERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
ER +A+KA++ E +G ++ SLAKP + K
Sbjct: 388 KERDAAVKAIEEMNGKEYEGTTIEVSLAKPPMENK 422
>gi|126342214|ref|XP_001362315.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 583
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 145/259 (55%), Gaps = 11/259 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L +S+G + ++R+M D G+ +GYAFV + K A
Sbjct: 66 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYQMRLMMDFD-GKNRGYAFVMYTHKREAK 124
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ EL++ E++ G+ + + RLFIG +P+ D++ + ++K+ GV+ + +
Sbjct: 125 RAVRELDNHEIRPGRPLGVCCSVDNCRLFIGGIPKMKKRDEILEEISKVTEGVLDVIVYA 184
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ +NRGFAFIEY +H A +R+K+ + +L V WA+P + + V
Sbjct: 185 SATDKTKNRGFAFIEYESHRAAAMARRKLMPGRIQLWGQQIAVDWAEPEMDVDEDVMETV 244
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL +++ +++ F+ G + +V ++ Y FVHF R A++A+
Sbjct: 245 KILYVRNLMIKTSEETIRKTFSQFGCVERV--------KKIRDYAFVHFTSREDAIRAMN 296
Query: 354 NTEKYEIDGQVLDCSLAKP 372
+ E++G L +LAKP
Sbjct: 297 SLNGTELEGSCLGVTLAKP 315
>gi|340382530|ref|XP_003389772.1| PREDICTED: APOBEC1 complementation factor-like [Amphimedon
queenslandica]
Length = 599
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 160/312 (51%), Gaps = 14/312 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G E+++G IP D +D+L + G V E+R+M +GYAFV + + A +++
Sbjct: 31 GCEIFIGKIPRDCFEDELVPIVEKAGPVYEMRLMMDHSGSMNRGYAFVVYCKAQDAKKSV 90
Query: 179 EELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
+ LN E+ KG+ I + RLF+G +P+ ++++R+ + K+ GV I +
Sbjct: 91 KLLNEYEIRKGRTIGVCMSVDNCRLFVGGIPKCLTKENIREEMEKVTDGVADIIMYPAAS 150
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ ++NRGFAF+EY +H A +R+K+ N + +L ++ V WA+P + + VK L
Sbjct: 151 DKSKNRGFAFVEYASHRAAAMARRKLINSRVRLWNHVVAVDWAEPELEVDEETMATVKIL 210
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
YV+NL T+ +L + F+HH + +V ++ Y FVHF RS A+ A+K
Sbjct: 211 YVRNLMLTTTEAQLNKAFSHHAPVERV--------KKIRDYAFVHFNSRSGALTAMKAMN 262
Query: 357 KYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPA 416
+D V++ +LAKP D++ + + YG++ Y L + Y P
Sbjct: 263 GSVLDDAVIEVTLAKP-VDKEAQMRNPPRHQKSPSPPTIPPPYGILPIDYSMLPSLYFPP 321
Query: 417 GFAQPMVYGRGA 428
P V+ R +
Sbjct: 322 S---PKVFSRNS 330
>gi|170592443|ref|XP_001900974.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
gi|158591041|gb|EDP29654.1| hnRNP-R, Q splicing factor family protein [Brugia malayi]
Length = 709
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 177/336 (52%), Gaps = 32/336 (9%)
Query: 117 PHGS--EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
P GS E+Y+G IP + +D L + +G++ ++R+M +G +GYAF+T+ K A
Sbjct: 288 PQGSGHEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTAA 347
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
+A ++ + E+ GK +K + + A RLFIGN+P++ ++++ + GV +
Sbjct: 348 YEAAKKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIY 407
Query: 234 KDPQ--NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAA 290
P + +NRGF F+++ +H A +++K+ K + ++ V WA+ + +
Sbjct: 408 SSPDAGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEETM 467
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
++VK LYV+NL + +T+++LKE+F+ +G++ + ++ Y F+HF ER A+K
Sbjct: 468 AKVKVLYVRNLKEAVTEEQLKEMFSAYGEVDR--------AKKIRDYAFIHFMEREPAIK 519
Query: 351 ALKNTEKYEIDGQVLDCSLAKPQADQK---------------TSGGSNSQKSALNPTYPP 395
A++ E++G +D SLAKPQ+D+K G + + P
Sbjct: 520 AMEALNGTELEGIAIDISLAKPQSDKKKMMRGRGRGFGGLRGAFGDFSFGRGMRGGRGTP 579
Query: 396 HLGYGMVGGAYGALGAGYVP-AGFAQPMVYGRGAAP 430
G G GG +GY P AG+ + +YG GA P
Sbjct: 580 GFGRGSFGGPTDFGYSGYDPYAGYEE--LYGYGAPP 613
>gi|167963512|ref|NP_001108158.1| RNA-binding protein 47 [Danio rerio]
Length = 600
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 148/261 (56%), Gaps = 13/261 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G E+++G IP D +D+L +S+G + E+R+M D G+ +GYAFV + K A
Sbjct: 78 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 136
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + ++ RLFIG +P+ +++ + V+K+ GV+ + +
Sbjct: 137 RAVRELNNFEIRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVLDVIVYA 196
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 197 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 256
Query: 294 KALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
K LYV+NL + +++ L++ F G + +V ++ Y FVHFA R A+ A
Sbjct: 257 KILYVRNLMIETSEEILRQTFGQFNPGCVERV--------KKIRDYAFVHFASRDDAVVA 308
Query: 352 LKNTEKYEIDGQVLDCSLAKP 372
+ N EI+G ++ +LAKP
Sbjct: 309 MDNLNGTEIEGSRIEVTLAKP 329
>gi|260791540|ref|XP_002590787.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
gi|229275983|gb|EEN46798.1| hypothetical protein BRAFLDRAFT_218629 [Branchiostoma floridae]
Length = 637
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 158/272 (58%), Gaps = 16/272 (5%)
Query: 114 ALPPHG-----SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTF 168
A+PP ++V++ IP D +D+L + G + ++R+M SG+ +GYAFVT+
Sbjct: 143 AMPPPCLVLLLAQVFVSKIPRDMFEDELIPLFEKPGPIFDLRLMMDPLSGQNRGYAFVTY 202
Query: 169 RTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
TKE A A+++L++ E+ KG+ + + A +RLF+G++P+N + ++ K+ G+
Sbjct: 203 TTKESAQDAVKQLDNYEIRKGRWLGVCISVANNRLFVGSIPKNKSKQEIFDEFGKVTNGL 262
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP-TVSWADP-RNA 285
+ + P++ +NRGFAF+EY +H A +R+++ + + K+ N TV WADP
Sbjct: 263 KDVIIYYMPEDKRKNRGFAFLEYLSHKEASLARRRLMSGRIKVWGNITVTVDWADPIEEP 322
Query: 286 ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAER 345
+ S+VK LYV+NL + ++ ++ F +G + +V ++ Y FVHF R
Sbjct: 323 DDEVMSKVKVLYVRNLAVEAAEEIIQAKFEPYGTVERV--------KKIKDYAFVHFENR 374
Query: 346 SSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A+KA+++ E++G ++ SLAKP +++K
Sbjct: 375 EDAIKAMEDLNGKELEGSAMEISLAKPPSEKK 406
>gi|291233435|ref|XP_002736660.1| PREDICTED: apobec-1 complementation factor-like [Saccoglossus
kowalevskii]
Length = 625
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 144/261 (55%), Gaps = 13/261 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G IP D +D+L S+G + E+R+M SG +GYAFV + KE A
Sbjct: 71 PGRGCEIFVGKIPRDLFEDELVPVFMSVGLIYEMRLMM-DFSGNNRGYAFVMYTNKEDAK 129
Query: 176 QAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+AI++LN+ E+ KG+ + A+ RLF+G +P+N D++ + K+ GV+ + +
Sbjct: 130 KAIKQLNNYEIRKGRYLGVCASVDNCRLFVGGIPKNKKRDEILHEMQKVTEGVVDVIVYP 189
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ +NRGFAF+EY NH A +R+K+ + +L + V WA+P + + V
Sbjct: 190 SATDKTKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEQEVDEDIMKTV 249
Query: 294 KALYVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
K LYV+NL + T++ +++ F G + +V ++ Y FVHF R A+ A
Sbjct: 250 KVLYVRNLMLNTTEETIEKEFNSLKEGSVERV--------KKIRDYAFVHFVTREDALYA 301
Query: 352 LKNTEKYEIDGQVLDCSLAKP 372
L + +DG V++ LAKP
Sbjct: 302 LNAMNGHNVDGSVVEVVLAKP 322
Score = 38.5 bits (88), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
P N E + ++V +P+D+ +D L +F G I ++ + G R Y FV
Sbjct: 63 PPNWEGITPGRGCEIFVGKIPRDLFEDELVPVFMSVGLIYEMRLMMDFSGNNRG-YAFVM 121
Query: 342 FAERSSAMKALKNTEKYEI 360
+ + A KA+K YEI
Sbjct: 122 YTNKEDAKKAIKQLNNYEI 140
>gi|357617562|gb|EHJ70861.1| hypothetical protein KGM_04943 [Danaus plexippus]
Length = 668
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 157/313 (50%), Gaps = 62/313 (19%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV+ G IP D +D+L +S G + ++R+M SG +GYAFVTF T+E +A+
Sbjct: 164 GCEVFCGKIPKDMYEDELIPLFESCGTIWDLRLMMDPMSGANRGYAFVTFTTREATQRAV 223
Query: 179 EE----------------------------------------------------LNSCEL 186
+E L++ E+
Sbjct: 224 QEHVINIPIDFGHKYAECDVATARRPAPGAAPRVSMAGVPTVITDLVYMCNVTPLDNHEI 283
Query: 187 K-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGF 245
K GK ++ + RLF+GN+P++ G++++ + K+ G++ + + P + +NRGF
Sbjct: 284 KPGKTLRIKISVPNLRLFVGNIPKSKGKEEILEEFGKLTAGLVEVIIYSSPDDKKKNRGF 343
Query: 246 AFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKD 304
F+EY +H A +++++ + K+ V WADP+ + S+VK LYV+NL ++
Sbjct: 344 CFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQE 403
Query: 305 ITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV 364
IT++ LKE F +G + +V ++ Y FVHF +R A+KA++ + E+ G
Sbjct: 404 ITEEALKEEFERYGNVERV--------KKIKDYAFVHFEDRDCAVKAMQEIDGKELGGAR 455
Query: 365 LDCSLAKPQADQK 377
L+ SLAKP +D+K
Sbjct: 456 LEVSLAKPPSDKK 468
>gi|432844963|ref|XP_004065796.1| PREDICTED: RNA-binding protein 47-like [Oryzias latipes]
Length = 602
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 154/276 (55%), Gaps = 18/276 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G E+++G IP D +D+L +S+G + E+R+M D G+ +GYAFV + K A
Sbjct: 79 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTEKHEAK 137
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + ++ RLFIG +P+ +++ + V+K+ GV+ + +
Sbjct: 138 RAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVLDVIVYA 197
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 198 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 257
Query: 294 KALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
K LYV+NL + ++ ++++F+ G + +V ++ Y FVHF R A+ A
Sbjct: 258 KILYVRNLMMETNEETIRQIFSQWNPGCVERV--------KKIRDYAFVHFTSRDDAVLA 309
Query: 352 LKNTEKYEIDGQVLDCSLAKP-----QADQKTSGGS 382
+ N EI+G ++ +LAKP + QK S G+
Sbjct: 310 MDNLNGTEIEGSCIEVTLAKPVDKEQYSRQKASKGA 345
>gi|156151394|ref|NP_001095868.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Homo sapiens]
gi|12655185|gb|AAH01449.1| HNRPR protein [Homo sapiens]
gi|123982706|gb|ABM83094.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|123997373|gb|ABM86288.1| heterogeneous nuclear ribonucleoprotein R [synthetic construct]
gi|383408163|gb|AFH27295.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|384939484|gb|AFI33347.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
gi|410262102|gb|JAA19017.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410301028|gb|JAA29114.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
gi|410350927|gb|JAA42067.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 636
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 145/242 (59%), Gaps = 13/242 (5%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRK---AVTKIGPGVISIE 231
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + VT + G++ +
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVI 280
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAA 290
L P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP +
Sbjct: 281 LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVM 340
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
++VK L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+K
Sbjct: 341 AKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVK 392
Query: 351 AL 352
A+
Sbjct: 393 AM 394
>gi|431893805|gb|ELK03622.1| RNA-binding protein 47 [Pteropus alecto]
Length = 578
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 150/270 (55%), Gaps = 13/270 (4%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K
Sbjct: 56 AHPQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNE 114
Query: 174 ASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
A +A+ ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 115 AKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIV 174
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAAS 291
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + +
Sbjct: 175 YASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVME 234
Query: 292 QVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
VK LYV+NL + T+D +K++F G + +V ++ Y FVHFA R A+
Sbjct: 235 TVKILYVRNLMIETTEDTIKKIFGQFNPGCVERV--------KKIRDYAFVHFASREDAV 286
Query: 350 KALKNTEKYEIDGQVLDCSLAKPQADQKTS 379
A+ N E++G L+ +LAKP ++ S
Sbjct: 287 HAMNNLNGTELEGSCLEVTLAKPVDKEQYS 316
>gi|297282467|ref|XP_001111802.2| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 1
[Macaca mulatta]
Length = 636
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 145/242 (59%), Gaps = 13/242 (5%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRK---AVTKIGPGVISIE 231
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + VT + G++ +
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVI 280
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAA 290
L P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP +
Sbjct: 281 LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVM 340
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
++VK L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+K
Sbjct: 341 AKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVK 392
Query: 351 AL 352
A+
Sbjct: 393 AM 394
>gi|324511732|gb|ADY44878.1| Heterogeneous nuclear ribonucleoprotein Q, partial [Ascaris suum]
Length = 561
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 154/263 (58%), Gaps = 12/263 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G E+Y+G IP++ +D L + +G++ ++R+M +G+ +GYAF+TF K A++A
Sbjct: 197 GHEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAA 256
Query: 179 EELNSCE-LKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
++ + E L GK +K + + A RLFIGN+P++ ++++ + GV + P
Sbjct: 257 KKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPD 316
Query: 238 --NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQVK 294
+ +NRGF F+++ +H A +++K+ K + + V WA+ + + ++VK
Sbjct: 317 AGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQEEPDEETMAKVK 376
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
LYV+NL + +T+++LKE+F+ HG++ V ++ Y F+HF ER A+KA++
Sbjct: 377 VLYVRNLKEAVTEEQLKEMFSAHGEVDHV--------KKIKDYAFIHFNEREPAVKAMEA 428
Query: 355 TEKYEIDGQVLDCSLAKPQADQK 377
++G ++ SLAKPQ+D+K
Sbjct: 429 LNGTVLEGVPIEISLAKPQSDKK 451
>gi|324502274|gb|ADY41001.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324504680|gb|ADY42019.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508493|gb|ADY43584.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
gi|324508971|gb|ADY43783.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 621
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 154/263 (58%), Gaps = 12/263 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G E+Y+G IP++ +D L + +G++ ++R+M +G+ +GYAF+TF K A++A
Sbjct: 197 GHEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAA 256
Query: 179 EELNSCE-LKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
++ + E L GK +K + + A RLFIGN+P++ ++++ + GV + P
Sbjct: 257 KKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPD 316
Query: 238 --NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQVK 294
+ +NRGF F+++ +H A +++K+ K + + V WA+ + + ++VK
Sbjct: 317 AGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQEEPDEETMAKVK 376
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
LYV+NL + +T+++LKE+F+ HG++ V ++ Y F+HF ER A+KA++
Sbjct: 377 VLYVRNLKEAVTEEQLKEMFSAHGEVDHV--------KKIKDYAFIHFNEREPAVKAMEA 428
Query: 355 TEKYEIDGQVLDCSLAKPQADQK 377
++G ++ SLAKPQ+D+K
Sbjct: 429 LNGTVLEGVPIEISLAKPQSDKK 451
>gi|156151396|ref|NP_001095869.1| heterogeneous nuclear ribonucleoprotein R isoform 3 [Homo sapiens]
gi|297282469|ref|XP_002802270.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 2
[Macaca mulatta]
gi|380784783|gb|AFE64267.1| heterogeneous nuclear ribonucleoprotein R isoform 1 [Macaca
mulatta]
Length = 535
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 145/242 (59%), Gaps = 13/242 (5%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 60 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 119
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRK---AVTKIGPGVISIE 231
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + VT + G++ +
Sbjct: 120 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVI 179
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAA 290
L P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP +
Sbjct: 180 LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVM 239
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
++VK L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+K
Sbjct: 240 AKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVK 291
Query: 351 AL 352
A+
Sbjct: 292 AM 293
>gi|34365228|emb|CAE45953.1| hypothetical protein [Homo sapiens]
Length = 613
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 145/242 (59%), Gaps = 13/242 (5%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 138 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 197
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRK---AVTKIGPGVISIE 231
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + VT + G++ +
Sbjct: 198 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVI 257
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAA 290
L P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP +
Sbjct: 258 LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVM 317
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
++VK L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+K
Sbjct: 318 AKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVK 369
Query: 351 AL 352
A+
Sbjct: 370 AM 371
>gi|324505135|gb|ADY42212.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 609
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 154/263 (58%), Gaps = 12/263 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G E+Y+G IP++ +D L + +G++ ++R+M +G+ +GYAF+TF K A++A
Sbjct: 185 GHEIYIGKIPNEIYEDTLIPLFEQVGKIWDLRLMMDPLTGKNRGYAFITFCEKNFAAEAA 244
Query: 179 EELNSCE-LKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
++ + E L GK +K + + A RLFIGN+P++ ++++ + GV + P
Sbjct: 245 KKFDGHEILPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPD 304
Query: 238 --NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVK 294
+ +NRGF F+++ +H A +++K+ K + + V WA+ + + ++VK
Sbjct: 305 AGESRKNRGFCFLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQEEPDEETMAKVK 364
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
LYV+NL + +T+++LKE+F+ HG++ V ++ Y F+HF ER A+KA++
Sbjct: 365 VLYVRNLKEAVTEEQLKEMFSAHGEVDHV--------KKIKDYAFIHFNEREPAVKAMEA 416
Query: 355 TEKYEIDGQVLDCSLAKPQADQK 377
++G ++ SLAKPQ+D+K
Sbjct: 417 LNGTVLEGVPIEISLAKPQSDKK 439
>gi|47213373|emb|CAF90992.1| unnamed protein product [Tetraodon nigroviridis]
Length = 611
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 147/256 (57%), Gaps = 11/256 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
GSE+++G +P D +D+L C+ G++ EVR+M SG +GYAFVTF K+ A A+
Sbjct: 56 GSEIFVGKLPRDLFEDELVPLCEKFGQIYEVRMMM-DFSGNNRGYAFVTFSNKQEAKAAM 114
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 115 KQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEIMCEMRKVTEGVVDVIVYPSAA 174
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ ++NRGFAF+EY +H A +R+K+ + +L +A V WA+P + + VK L
Sbjct: 175 DKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVEVDEDTMATVKIL 234
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
YV+NL T++ +++ F ++ +V ++ Y FVHFA+R A+ A+K
Sbjct: 235 YVRNLMLQTTEETIEKEFNSLKEVERV--------KKIRDYAFVHFAQREDAIHAMKELN 286
Query: 357 KYEIDGQVLDCSLAKP 372
+DG ++ +LAKP
Sbjct: 287 GKVVDGSPIEVTLAKP 302
>gi|410917474|ref|XP_003972211.1| PREDICTED: RNA-binding protein 47-like [Takifugu rubripes]
Length = 601
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 158/287 (55%), Gaps = 18/287 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G E+++G IP D +D+L +S+G + E+R+M D G+ +GYAFV + K A
Sbjct: 79 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTEKHEAK 137
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + ++ RLFIG +P+ +++ + V+K+ GVI + +
Sbjct: 138 RAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVIDVIVYA 197
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 198 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 257
Query: 294 KALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
K LYV+NL + +++ ++++F+ G + +V ++ Y FVHF R A+ A
Sbjct: 258 KILYVRNLMMETSEETIRKVFSQWNPGCVERV--------KKIRDYAFVHFNSRDDAVLA 309
Query: 352 LKNTEKYEIDGQVLDCSLAKP-----QADQKTSGGSNSQKSALNPTY 393
+ + E++G ++ +LAKP + QK S G+ + A Y
Sbjct: 310 MNHLNGTEVEGSCIEVTLAKPVDKEQYSRQKASKGAPATPEATQQNY 356
>gi|395821031|ref|XP_003783853.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Otolemur garnettii]
Length = 595
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 142/234 (60%), Gaps = 10/234 (4%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
+V++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A +A++
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 181 LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
+S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYV 298
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+V
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFV 307
Query: 299 KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 308 RNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 353
>gi|296196676|ref|XP_002745942.1| PREDICTED: RNA-binding protein 47 isoform 1 [Callithrix jacchus]
Length = 594
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 155/285 (54%), Gaps = 19/285 (6%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKP------QADQKTSGGSNSQKSALNPTY 393
E++G L+ +LAKP QK + G ++ ++A P+Y
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYSRYQKAARGGSAAEAAQQPSY 345
>gi|417403083|gb|JAA48365.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily [Desmodus rotundus]
Length = 590
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 156/284 (54%), Gaps = 20/284 (7%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K++F G + +V ++ Y FVHFA R A+ A+K
Sbjct: 249 YVRNLMMETTEDTIKKIFGQFNPGCVERV--------KKIRDYAFVHFASREDAVHAMKK 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS-------GGSNSQKSALNP 391
+++G L+ +LAKP ++ S GG ++ +A+ P
Sbjct: 301 LNGTDLEGSCLEVTLAKPVDKEQYSRYQKAAKGGGVAEGAAVQP 344
>gi|291385687|ref|XP_002709446.1| PREDICTED: RNA binding motif protein 47-like isoform 1 [Oryctolagus
cuniculus]
Length = 591
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 158/286 (55%), Gaps = 20/286 (6%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 71 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 129
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 130 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 189
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 190 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 249
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHFA R A++A+ +
Sbjct: 250 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVRAMNS 301
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS-------GGSNSQKSALNPTY 393
E++G L+ +LAKP ++ S GG+ ++ +A P+Y
Sbjct: 302 LNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGAVAEAAAQPPSY 347
>gi|348536212|ref|XP_003455591.1| PREDICTED: probable RNA-binding protein 46-like [Oreochromis
niloticus]
Length = 574
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 150/259 (57%), Gaps = 13/259 (5%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G EV++G IP D +DDL + +G + E R+M + SGE +GYAFV + +E A +A
Sbjct: 75 RGCEVFVGKIPRDMYEDDLVPLFEKVGRIYEFRLMM-EFSGENRGYAFVMYTDREAAQRA 133
Query: 178 IEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDP 236
I+ L++ E++ GK I + RLFIG++P++ +D++ + + K+ GV+ +
Sbjct: 134 IQMLDNYEVRPGKFIGVCVSLDNCRLFIGSIPKDKRKDEVIEEMKKVTDGVVDAIVYPST 193
Query: 237 QNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKA 295
+ N+NRGFAF+EY +H A +R+K+ F+L ++ V WA+P ++ + +V+
Sbjct: 194 TDKNKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHSIQVDWAEPEKDVDEEVMQRVRV 253
Query: 296 LYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
LYV+NL + +++ L++ F+ G + +V ++ S Y F+H+ RS A+ AL
Sbjct: 254 LYVRNLMLETSEETLRQEFSRFKPGCVERV--------KKLSDYAFIHYRSRSDALTALS 305
Query: 354 NTEKYEIDGQVLDCSLAKP 372
IDG ++ +LAKP
Sbjct: 306 LMNGAHIDGAAVEVTLAKP 324
>gi|296196678|ref|XP_002745943.1| PREDICTED: RNA-binding protein 47 isoform 2 [Callithrix jacchus]
Length = 525
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 162/306 (52%), Gaps = 26/306 (8%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKP------QADQKTSGGSNSQKSALNPTY-----PPHLGYGMVG 403
E++G L+ +LAKP QK + G ++ ++A P+Y P L Y G
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYSRYQKAARGGSAAEAAQQPSYVYSCDPYTLAY--YG 358
Query: 404 GAYGAL 409
Y AL
Sbjct: 359 YPYNAL 364
>gi|73950236|ref|XP_866562.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 7
[Canis lupus familiaris]
gi|403287394|ref|XP_003934933.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Saimiri boliviensis boliviensis]
gi|410966348|ref|XP_003989695.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R [Felis catus]
gi|85681819|gb|ABC73063.1| heterogeneous nuclear ribonucleoprotein-R2 [Homo sapiens]
Length = 595
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 142/234 (60%), Gaps = 10/234 (4%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
+V++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A +A++
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 181 LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
+S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYV 298
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+V
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFV 307
Query: 299 KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 308 RNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 353
>gi|338722115|ref|XP_003364486.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Equus caballus]
Length = 595
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 142/234 (60%), Gaps = 10/234 (4%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
+V++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A +A++
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 181 LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
+S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYV 298
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+V
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFV 307
Query: 299 KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 308 RNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 353
>gi|194386914|dbj|BAG59823.1| unnamed protein product [Homo sapiens]
Length = 595
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 142/234 (60%), Gaps = 10/234 (4%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
+V++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A +A++
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 181 LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
+S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYV 298
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+V
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFV 307
Query: 299 KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 308 RNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 353
>gi|291385689|ref|XP_002709447.1| PREDICTED: RNA binding motif protein 47-like isoform 2 [Oryctolagus
cuniculus]
Length = 522
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 165/307 (53%), Gaps = 27/307 (8%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 71 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 129
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 130 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 189
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 190 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 249
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHFA R A++A+ +
Sbjct: 250 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVRAMNS 301
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS-------GGSNSQKSALNPTY-----PPHLGYGMV 402
E++G L+ +LAKP ++ S GG+ ++ +A P+Y P L Y
Sbjct: 302 LNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGAVAEAAAQPPSYVYSCDPYTLAY--Y 359
Query: 403 GGAYGAL 409
G Y AL
Sbjct: 360 GYPYNAL 366
>gi|426221980|ref|XP_004005183.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2
[Ovis aries]
Length = 595
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 142/234 (60%), Gaps = 10/234 (4%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
+V++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A +A++
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 181 LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
+S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYV 298
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+V
Sbjct: 248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFV 307
Query: 299 KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 308 RNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 353
>gi|403300669|ref|XP_003941042.1| PREDICTED: RNA-binding protein 47 [Saimiri boliviensis boliviensis]
Length = 631
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 155/285 (54%), Gaps = 19/285 (6%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKP------QADQKTSGGSNSQKSALNPTY 393
E++G L+ +LAKP QK + G ++ ++A P+Y
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYSRYQKAARGGSAAEAAQQPSY 345
>gi|397478945|ref|XP_003810794.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
paniscus]
Length = 578
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 142/234 (60%), Gaps = 10/234 (4%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
+V++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A +A++
Sbjct: 111 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 170
Query: 181 LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
+S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 171 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 230
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYV 298
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+V
Sbjct: 231 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFV 290
Query: 299 KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 291 RNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 336
>gi|348571794|ref|XP_003471680.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Cavia porcellus]
Length = 592
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 154/283 (54%), Gaps = 19/283 (6%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHFA R A++A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVQAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKP------QADQKTSGGSNSQKSALNP 391
E++G L+ +LAKP QK + G ++A+ P
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGVAEAAVQP 343
>gi|395542863|ref|XP_003773344.1| PREDICTED: RNA-binding protein 47 isoform 1 [Sarcophilus harrisii]
Length = 590
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 146/261 (55%), Gaps = 13/261 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L +S+G + E+R+M D G+ +GYAFV + K A
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTHKHEAK 125
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + + RLFIG +P+ +++ + ++K+ GV+ + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 294 KALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
K LYV+NL + T++ +K+ F G + +V ++ Y FVHF R A+ A
Sbjct: 246 KILYVRNLMIETTEETIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSRDDAVHA 297
Query: 352 LKNTEKYEIDGQVLDCSLAKP 372
+ + E++G L+ +LAKP
Sbjct: 298 MNSLNGTELEGSCLEVTLAKP 318
>gi|126331699|ref|XP_001365552.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Monodelphis
domestica]
Length = 592
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 146/261 (55%), Gaps = 13/261 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L +S+G + E+R+M D G+ +GYAFV + K A
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTHKHEAK 125
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + + RLFIG +P+ +++ + ++K+ GV+ + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 294 KALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
K LYV+NL + T++ +K+ F G + +V ++ Y FVHF R A+ A
Sbjct: 246 KILYVRNLMIETTEETIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHA 297
Query: 352 LKNTEKYEIDGQVLDCSLAKP 372
+ + E++G L+ +LAKP
Sbjct: 298 MNSLNGTELEGSCLEVTLAKP 318
>gi|73950238|ref|XP_866575.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 8
[Canis lupus familiaris]
gi|296207006|ref|XP_002750460.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Callithrix jacchus]
gi|297282471|ref|XP_002802271.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 3
[Macaca mulatta]
gi|332244974|ref|XP_003271638.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Nomascus leucogenys]
gi|332807933|ref|XP_003307912.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 2 [Pan
troglodytes]
gi|402853338|ref|XP_003891353.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Papio anubis]
gi|426328277|ref|XP_004024926.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Gorilla gorilla gorilla]
gi|119615446|gb|EAW95040.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Homo
sapiens]
gi|194390156|dbj|BAG61840.1| unnamed protein product [Homo sapiens]
Length = 494
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 142/234 (60%), Gaps = 10/234 (4%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
+V++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A +A++
Sbjct: 27 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 86
Query: 181 LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
+S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 87 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 146
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYV 298
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+V
Sbjct: 147 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFV 206
Query: 299 KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 207 RNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 252
>gi|449676978|ref|XP_002157894.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Hydra
magnipapillata]
Length = 623
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 156/278 (56%), Gaps = 19/278 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S++++G +P D +D+L + G + ++RIM SG KG+AF T+ TKE A+ A++
Sbjct: 164 SQIFIGKLPRDMYEDELVPMFEPHGTIYDLRIMVDPFSGLNKGFAFCTYTTKEAATLAVK 223
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGE----DDMRKAVTKIGPGVISIELVK 234
E++ +++ GK + +QA +RLF+G++P++ + D+ V + ++ I
Sbjct: 224 EMDGKQVRDGKTLGVCLSQANNRLFVGSIPKSKTKQQIFDEFASKVENLSDVIVYIS--- 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN-APTVSWADP-RNAESSAASQ 292
++ ++NRGFAF+E+ H A +R++ + K+ N PTV WADP + + S+
Sbjct: 281 -SEDKSKNRGFAFLEFTTHKDASLARRRFMTGRIKVFGNITPTVDWADPVEEPDDNVMSK 339
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK +YV+NL I + +L ELF +G + KV ++ Y F+HF R A++A+
Sbjct: 340 VKVVYVRNLSPAIEETKLNELFKQYGAVEKV--------KKLKDYAFIHFVNRDDAVRAI 391
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALN 390
+ ++D ++ SLAKPQ ++K + S +LN
Sbjct: 392 EELNGQDLDDLKIEVSLAKPQTEKKEARRGQSGFGSLN 429
>gi|393911205|gb|EJD76209.1| HnRNP-R [Loa loa]
Length = 729
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 153/263 (58%), Gaps = 12/263 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G E+Y+G IP + +D L + +G++ ++R+M +G +GYAF+T+ K A +A
Sbjct: 312 GHEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTSAYEAA 371
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
++ + E+ GK +K + + A RLFIGN+P++ ++++ + GV + P
Sbjct: 372 KKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPD 431
Query: 238 --NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQVK 294
+ +NRGF F+++ +H A +++K+ K + ++ V WA+ + + ++VK
Sbjct: 432 AGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEETMAKVK 491
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
LYV+NL + +T+++LKE+F+ +G++ + ++ Y F+HF ER A+KA++
Sbjct: 492 VLYVRNLKEAVTEEQLKEMFSAYGEVDR--------AKKIRDYAFIHFMEREPAIKAMEA 543
Query: 355 TEKYEIDGQVLDCSLAKPQADQK 377
E++G +D SLAKPQ+D+K
Sbjct: 544 LNGTELEGIAIDISLAKPQSDKK 566
>gi|348571796|ref|XP_003471681.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Cavia porcellus]
Length = 523
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 163/307 (53%), Gaps = 27/307 (8%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHFA R A++A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVQAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS-------GGSNSQKSALNPTY-----PPHLGYGMV 402
E++G L+ +LAKP ++ S GG ++ + P+Y P L Y
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGVAEAAVQPPSYVYSCDPYTLAY--Y 358
Query: 403 GGAYGAL 409
G Y AL
Sbjct: 359 GYPYNAL 365
>gi|357114605|ref|XP_003559089.1| PREDICTED: uncharacterized protein LOC100837927 [Brachypodium
distachyon]
Length = 1019
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 175/343 (51%), Gaps = 34/343 (9%)
Query: 93 EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIM 152
E M +++ K+ + KK E +++GG+ DA ++D+R +G+V +VR+
Sbjct: 494 ERMVMSDMAKNRQLKKELE----------IFVGGLNRDAVEEDIRSVFGQVGDVVDVRLH 543
Query: 153 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWG 212
K + KG+AFV F TKE S+A+ E+ + ++GK+ +A++ LF+GN+ W
Sbjct: 544 KDLLTNRNKGFAFVKFATKEQVSRALAEMKNPMIRGKRCGIAASEDNDTLFLGNICNTWT 603
Query: 213 EDDMRKAVTKIGP-GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP--KFK 269
++ ++K + G GV S+ LV D QN Q+RGFAF+E+ HA A + +++ P F
Sbjct: 604 KEAIKKRLLDYGIEGVQSLTLVPDTQNEGQSRGFAFLEFSCHADAMLAFKRLQQPDAMFG 663
Query: 270 LDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 328
+ V++A+P + ++ +QVK++++ LP +DR+K+ F +G I +VV+
Sbjct: 664 HPERTAKVAFAEPIKEPDAEVMAQVKSVFIDGLPPYWDEDRVKDRFKAYGVIERVVLASN 723
Query: 329 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSA 388
+R+ +GFV+F+ +A+ ++ T E+ G + K
Sbjct: 724 MSSAKRNDFGFVNFSTHEAALACIEATNNTELG-----------------DDGKSKVKVR 766
Query: 389 LNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPG 431
+ + P + GG G GY GF +P GRG + G
Sbjct: 767 VRLSNPLPKSQAVKGGMTGGFRIGYSGFGFNRP---GRGFSKG 806
>gi|260812205|ref|XP_002600811.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
gi|229286101|gb|EEN56823.1| hypothetical protein BRAFLDRAFT_229359 [Branchiostoma floridae]
Length = 531
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 149/260 (57%), Gaps = 10/260 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV++G IP D +D+L +SIG++ E+R+M + G +GYAFV + +++ A
Sbjct: 55 PSRGCEVFVGKIPRDLFEDELVPVFESIGKIYELRLMMDFN-GNNRGYAFVMYTSRDDAK 113
Query: 176 QAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+++LN+ E+ KG+ + + RLF+G +P+N + ++ + ++K+ GV+ + +
Sbjct: 114 RAVKQLNNYEIRKGRLLGVCPSVDNCRLFVGGIPKNKKKHEILEEMSKVTEGVVDVIVYP 173
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + V
Sbjct: 174 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEVEVDEDIMKSV 233
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKAL 352
K LYV+NL T++ LKE F + VV P + ++ R Y FVHF R A+KA+
Sbjct: 234 KVLYVRNLLLTTTEESLKESFEN------VVSPGSVERVKKIRDYAFVHFKTREEAVKAM 287
Query: 353 KNTEKYEIDGQVLDCSLAKP 372
T IDG ++ +LAKP
Sbjct: 288 NATNGQLIDGCQVEVTLAKP 307
>gi|126331701|ref|XP_001365615.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Monodelphis
domestica]
Length = 523
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 146/261 (55%), Gaps = 13/261 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L +S+G + E+R+M D G+ +GYAFV + K A
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTHKHEAK 125
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + + RLFIG +P+ +++ + ++K+ GV+ + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 294 KALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
K LYV+NL + T++ +K+ F G + +V ++ Y FVHF R A+ A
Sbjct: 246 KILYVRNLMIETTEETIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHA 297
Query: 352 LKNTEKYEIDGQVLDCSLAKP 372
+ + E++G L+ +LAKP
Sbjct: 298 MNSLNGTELEGSCLEVTLAKP 318
>gi|393911204|gb|EJD76208.1| HnRNP-R, variant [Loa loa]
Length = 696
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 153/263 (58%), Gaps = 12/263 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G E+Y+G IP + +D L + +G++ ++R+M +G +GYAF+T+ K A +A
Sbjct: 279 GHEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTSAYEAA 338
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
++ + E+ GK +K + + A RLFIGN+P++ ++++ + GV + P
Sbjct: 339 KKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPD 398
Query: 238 --NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQVK 294
+ +NRGF F+++ +H A +++K+ K + ++ V WA+ + + ++VK
Sbjct: 399 AGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEETMAKVK 458
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
LYV+NL + +T+++LKE+F+ +G++ + ++ Y F+HF ER A+KA++
Sbjct: 459 VLYVRNLKEAVTEEQLKEMFSAYGEVDR--------AKKIRDYAFIHFMEREPAIKAMEA 510
Query: 355 TEKYEIDGQVLDCSLAKPQADQK 377
E++G +D SLAKPQ+D+K
Sbjct: 511 LNGTELEGIAIDISLAKPQSDKK 533
>gi|395542865|ref|XP_003773345.1| PREDICTED: RNA-binding protein 47 isoform 2 [Sarcophilus harrisii]
Length = 521
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 146/261 (55%), Gaps = 13/261 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L +S+G + E+R+M D G+ +GYAFV + K A
Sbjct: 67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTHKHEAK 125
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + + RLFIG +P+ +++ + ++K+ GV+ + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 185
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 245
Query: 294 KALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
K LYV+NL + T++ +K+ F G + +V ++ Y FVHF R A+ A
Sbjct: 246 KILYVRNLMIETTEETIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSRDDAVHA 297
Query: 352 LKNTEKYEIDGQVLDCSLAKP 372
+ + E++G L+ +LAKP
Sbjct: 298 MNSLNGTELEGSCLEVTLAKP 318
>gi|358419077|ref|XP_003584119.1| PREDICTED: APOBEC1 complementation factor [Bos taurus]
Length = 461
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 158/294 (53%), Gaps = 22/294 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY NH A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFTNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQKSALNPTYPPHLGY 399
++A+K +DG ++ +LAKP + + + G+ + + L Y LG+
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGAMLQGEYTYSLGH 333
>gi|432109353|gb|ELK33614.1| RNA-binding protein 47 [Myotis davidii]
Length = 733
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 84/261 (32%), Positives = 147/261 (56%), Gaps = 13/261 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A
Sbjct: 210 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKADAK 268
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + + RLFIG +P+ +++ + ++K+ GV+ + +
Sbjct: 269 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEISKVTEGVLDVIVYA 328
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 329 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 388
Query: 294 KALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
K LYV+NL + T+D +K++F G + +V ++ Y FVHFA R A+ A
Sbjct: 389 KILYVRNLMIETTEDTIKKVFGQFNPGCVERV--------KKIRDYAFVHFASREDAVHA 440
Query: 352 LKNTEKYEIDGQVLDCSLAKP 372
+ + E++G L+ +LAKP
Sbjct: 441 MNHLNGTELEGSCLEVTLAKP 461
>gi|359476835|ref|XP_002266579.2| PREDICTED: uncharacterized protein LOC100259067 [Vitis vinifera]
gi|297735034|emb|CBI17396.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 185/353 (52%), Gaps = 39/353 (11%)
Query: 40 DHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGIDA---QKHYDGDEEMK 96
D EE+ EE+++ VE++EE + E+V E ET + G DA + Y GDE M
Sbjct: 225 DVNEELGEEIKH--VEDKEETK-----NEQVNMEAETNEARVGEDAPVKEDKYYGDEVMD 277
Query: 97 VAE-------------SDKDD-------EKKKHAELLALP-----PHGSEVYLGGIPHDA 131
+ SD D +++H EL A+ E+++GG+ DA
Sbjct: 278 YGDEEGLEEPEEELPVSDAVDPGEETEALEEEHRELTAIAKERKISKAHEIFVGGLDRDA 337
Query: 132 SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191
++D++ + IGEV EVR+ K S + KGYAFV F KE AS+A+ E+ + + GK+
Sbjct: 338 EEEDVKKVFERIGEVVEVRLHKNLSSNKNKGYAFVKFANKEHASRALSEMKNPVICGKRC 397
Query: 192 KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEY 250
+ ++ + LF+GN+ W ++ +++ + G GV +I LV +PQ+ +RGFAF+E+
Sbjct: 398 GTAPSEDNNTLFLGNICNTWTKEAIKQKLKDYGIEGVGNITLVPNPQHEGLSRGFAFLEF 457
Query: 251 YNHACAEYSRQKMSNPK--FKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQ 307
HA A + +++ P F + V++A+P R + +QVK+++V LP +
Sbjct: 458 SCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPLREPDPEIMAQVKSVFVDGLPPHWDE 517
Query: 308 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 360
DR++E F +G+I ++V+ +R +GFV F +A+ + + E+
Sbjct: 518 DRVREQFKGYGEIERIVLARNMSTAKRKDFGFVDFTTHEAALSCIDSVNNTEL 570
>gi|359079976|ref|XP_003587913.1| PREDICTED: APOBEC1 complementation factor [Bos taurus]
gi|296472873|tpg|DAA14988.1| TPA: apobec-1 complementation factor-like isoform 1 [Bos taurus]
Length = 595
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY NH A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFTNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|146231848|gb|ABQ12999.1| hypothetical protein LOC54502 [Bos taurus]
Length = 492
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 144/258 (55%), Gaps = 13/258 (5%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHFA R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKP 372
E++G L+ +LAKP
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|426252733|ref|XP_004020057.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Ovis aries]
Length = 595
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY NH A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFTNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|26330794|dbj|BAC29127.1| unnamed protein product [Mus musculus]
Length = 590
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 155/287 (54%), Gaps = 21/287 (7%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ ++ + + K+ GV+++ +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T++ +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEETIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS--------GGSNSQKSALNPTY 393
E++G L+ +LAKP ++ S GG +++ A P+Y
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSY 347
>gi|350587465|ref|XP_003128987.3| PREDICTED: RNA-binding protein 47-like isoform 1 [Sus scrofa]
Length = 591
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 147/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHFA R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|297490704|ref|XP_002698411.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Bos taurus]
gi|296472874|tpg|DAA14989.1| TPA: apobec-1 complementation factor-like isoform 2 [Bos taurus]
Length = 587
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY NH A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFTNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|426252731|ref|XP_004020056.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Ovis aries]
Length = 587
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY NH A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFTNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|147803493|emb|CAN64286.1| hypothetical protein VITISV_002726 [Vitis vinifera]
Length = 837
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 185/353 (52%), Gaps = 39/353 (11%)
Query: 40 DHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGIDA---QKHYDGDEEMK 96
D EE+ EE+++ VE++EE + E+V E ET + G DA + Y GDE M
Sbjct: 225 DVNEELGEEIKH--VEDKEETK-----NEQVNMEAETNEARVGEDAPVKEDKYYGDEVMD 277
Query: 97 VAE-------------SDKDD-------EKKKHAELLALP-----PHGSEVYLGGIPHDA 131
+ SD D +++H EL A+ E+++GG+ DA
Sbjct: 278 YGDEEGLEEPEEELPVSDAVDPGEETEALEEEHRELTAIAKERKISKAHEIFVGGLDRDA 337
Query: 132 SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191
++D++ + IGEV EVR+ K S + KGYAFV F KE AS+A+ E+ + + GK+
Sbjct: 338 EEEDVKKVFERIGEVVEVRLHKNLSSNKNKGYAFVKFANKEHASRALSEMKNPVICGKRC 397
Query: 192 KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEY 250
+ ++ + LF+GN+ W ++ +++ + G GV +I LV +PQ+ +RGFAF+E+
Sbjct: 398 GTAPSEDNNTLFLGNICNTWTKEAIKQKLKDYGIEGVGNITLVPNPQHEGLSRGFAFLEF 457
Query: 251 YNHACAEYSRQKMSNPK--FKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQ 307
HA A + +++ P F + V++A+P R + +QVK+++V LP +
Sbjct: 458 SCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPLREPDPEIMAQVKSVFVDGLPPHWDE 517
Query: 308 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 360
DR++E F +G+I ++V+ +R +GFV F +A+ + + E+
Sbjct: 518 DRVREQFKGYGEIERIVLARNMSTAKRKDFGFVDFTTHEAALSCIDSVNNTEL 570
>gi|440898350|gb|ELR49866.1| APOBEC1 complementation factor [Bos grunniens mutus]
Length = 595
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY NH A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF R A
Sbjct: 231 KILYVRNLMLSTSEEVIEKEFNN-----------IKPGAVERVKKIRDYAFVHFTNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|344274538|ref|XP_003409072.1| PREDICTED: APOBEC1 complementation factor [Loxodonta africana]
Length = 595
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 147/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
+KA+K +DG ++ +LAKP
Sbjct: 280 VKAMKALNGKVLDGSPIEVTLAKP 303
>gi|329664912|ref|NP_001192963.1| RNA-binding protein 47 [Bos taurus]
gi|296486627|tpg|DAA28740.1| TPA: RNA binding motif protein 47 [Bos taurus]
gi|440900817|gb|ELR51867.1| RNA-binding protein 47 [Bos grunniens mutus]
Length = 591
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 144/258 (55%), Gaps = 13/258 (5%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHFA R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKP 372
E++G L+ +LAKP
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|20532346|ref|NP_620704.1| RNA-binding protein 47 [Mus musculus]
gi|188497698|ref|NP_848541.2| RNA-binding protein 47 [Mus musculus]
gi|188497701|ref|NP_001120854.1| RNA-binding protein 47 [Mus musculus]
gi|81916136|sp|Q91WT8.1|RBM47_MOUSE RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|15488668|gb|AAH13481.1| RNA binding motif protein 47 [Mus musculus]
gi|21707976|gb|AAH34195.1| Rbm47 protein [Mus musculus]
gi|26351775|dbj|BAC39524.1| unnamed protein product [Mus musculus]
gi|74206583|dbj|BAE41553.1| unnamed protein product [Mus musculus]
gi|133778325|gb|AAI12903.1| RNA binding motif protein 47 [Mus musculus]
gi|148705813|gb|EDL37760.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
gi|148705814|gb|EDL37761.1| cDNA sequence BC013481, isoform CRA_a [Mus musculus]
Length = 590
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 155/287 (54%), Gaps = 21/287 (7%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ ++ + + K+ GV+++ +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T++ +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEETIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS--------GGSNSQKSALNPTY 393
E++G L+ +LAKP ++ S GG +++ A P+Y
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSY 347
>gi|34393486|dbj|BAC83046.1| putative RRM RNA binding protein NSAP1 [Oryza sativa Japonica
Group]
Length = 613
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 138/264 (52%), Gaps = 5/264 (1%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++GG+ DA +DD+R GE+TEVR++ +G+ KGY FV +R A +AI E
Sbjct: 237 EVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRHAAQAKKAIAE 296
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNA 239
+ ++ GK + + R+F+GN+ + W ++D+ K + KIG + S+ L D N
Sbjct: 297 FGNVKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNP 356
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVK 299
NRGFAF+E A + +K+S V+WA+P N QVK+++V
Sbjct: 357 VCNRGFAFLELETSRDARMAYKKLSQKNAFGKGLNIRVAWAEPLNDPDEKDMQVKSIFVD 416
Query: 300 NLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359
+P +LKE+F HGKI VV+ P +R + F+++ R +A+ L++ +K E
Sbjct: 417 GIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRRDFAFINYITREAAISCLESFDKEE 476
Query: 360 IDGQ----VLDCSLAKPQADQKTS 379
+ SLAKP K +
Sbjct: 477 FSKNGSKVNIKVSLAKPAQQSKQT 500
>gi|444513680|gb|ELV10430.1| RNA-binding protein 47 [Tupaia chinensis]
Length = 580
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 147/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETMGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + V K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEVAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHFA R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVLAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|301757153|ref|XP_002914427.1| PREDICTED: APOBEC1 complementation factor-like [Ailuropoda
melanoleuca]
gi|281344706|gb|EFB20290.1| hypothetical protein PANDA_002310 [Ailuropoda melanoleuca]
Length = 592
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 160/294 (54%), Gaps = 22/294 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF ++ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNRQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ ++NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKSRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQKSALNPTYPPHLGY 399
M+A+K +DG ++ +LAKP + + + G+ + + L Y LG+
Sbjct: 280 MEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQGEYTYSLGH 333
>gi|395856660|ref|XP_003800739.1| PREDICTED: RNA-binding protein 47 [Otolemur garnettii]
Length = 591
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 149/270 (55%), Gaps = 13/270 (4%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K
Sbjct: 65 AHPQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHE 123
Query: 174 ASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
A +A+ ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 124 AKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIV 183
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAAS 291
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + +
Sbjct: 184 YASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVME 243
Query: 292 QVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
VK LYV+NL + T+D +K+ F G + +V ++ Y FVHFA R A+
Sbjct: 244 TVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAV 295
Query: 350 KALKNTEKYEIDGQVLDCSLAKPQADQKTS 379
A+ + E++G L+ +LAKP ++ S
Sbjct: 296 HAMNSLNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|431839024|gb|ELK00953.1| APOBEC1 complementation factor [Pteropus alecto]
Length = 543
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 158/294 (53%), Gaps = 22/294 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M SG +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMM-DFSGNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFNNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQKSALNPTYPPHLGY 399
++A+K +DG ++ +LAKP + + + G+ + + L Y LG+
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQGEYTYSLGH 333
>gi|74216343|dbj|BAE25115.1| unnamed protein product [Mus musculus]
Length = 377
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 162/308 (52%), Gaps = 28/308 (9%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ ++ + + K+ GV+++ +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T++ +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEETIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS--------GGSNSQKSALNPTY-----PPHLGYGM 401
E++G L+ +LAKP ++ S GG +++ A P+Y P L Y
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDPYTLAY-- 358
Query: 402 VGGAYGAL 409
G Y AL
Sbjct: 359 YGYPYNAL 366
>gi|54312090|ref|NP_001005882.1| RNA-binding protein 47 [Rattus norvegicus]
gi|81910667|sp|Q66H68.1|RBM47_RAT RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|51859195|gb|AAH81995.1| Hypothetical RNA binding protein RGD1359713 [Rattus norvegicus]
gi|149035343|gb|EDL90047.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
gi|149035344|gb|EDL90048.1| hypothetical RNA binding protein RGD1359713, isoform CRA_a [Rattus
norvegicus]
Length = 590
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 154/287 (53%), Gaps = 21/287 (7%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ ++ + + K+ GV+++ +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T++ +K F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEETIKRSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS--------GGSNSQKSALNPTY 393
E++G L+ +LAKP ++ S GG +++ A P+Y
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSY 347
>gi|444512913|gb|ELV10212.1| APOBEC1 complementation factor [Tupaia chinensis]
Length = 598
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 159/294 (54%), Gaps = 22/294 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 55 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 113
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 114 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 173
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 174 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 233
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 234 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 282
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQKSALNPTYPPHLGY 399
++A+K +DG ++ +LAKP + + + G+ + + L Y LG+
Sbjct: 283 VEAMKALNGKMLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTVLQGEYTYSLGH 336
>gi|219521533|gb|AAI43943.1| RNA binding motif protein 47 [Homo sapiens]
Length = 593
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 146/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 301 LNGTELEGSCLEVTLAKPMDKEQYS 325
>gi|356561166|ref|XP_003548856.1| PREDICTED: uncharacterized protein LOC100819035 [Glycine max]
Length = 953
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 139/244 (56%), Gaps = 4/244 (1%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
E+++GG+ DA+++DLR + IGE+ EVR+ K + + KGYAFV F KE A +A+ E
Sbjct: 459 EIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFANKENAKKALSE 518
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNA 239
+ + + GK+ + ++ LF+GN+ W ++ +++ + G GV SI LV D Q+
Sbjct: 519 MKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVESITLVPDVQHE 578
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPK--FKLDDNAPTVSWADP-RNAESSAASQVKAL 296
+RGFAF+E+ HA A + +++ P F + V++A+P + +QVK++
Sbjct: 579 GLSRGFAFLEFSCHADAMLAFKRLQKPDVIFGHAERTAKVAFAEPIHEPDPEIMAQVKSV 638
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
++ LP +D ++ELF +G+I ++V+ +R YGFV F+ +A+ +
Sbjct: 639 FINGLPPHWDEDHVRELFKAYGEIVRIVLARNMSSAKRKDYGFVDFSTHEAAVACVDGVN 698
Query: 357 KYEI 360
K E+
Sbjct: 699 KSEL 702
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 89/387 (22%), Positives = 167/387 (43%), Gaps = 84/387 (21%)
Query: 30 EERVDLDEDNDHEE--EVEEEVEYEEVEEEEEVEVEEEVEE-----------EVEEEEET 76
EE +LD + EE E++ E EE++E + + +EE++E E++ E+
Sbjct: 249 EELRELDAEKAKEELKELDGEKGKEELKELDGEKGKEELKELDGEKGKEELKELDGEKGK 308
Query: 77 EDVVDGIDAQKHYD---------------------GDEEMKVAESDKDDEKKKHAELLAL 115
E++ + ++ QK + G E+K E DK EK K EL
Sbjct: 309 EELTE-LEGQKGKEELTELEGQKGKGELTELEGQKGKVELKEQEGDKGKEKLKVQELEK- 366
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI-MKGKDSGEAK--GYAFVTFRTKE 172
G E YL G + KS G EV+ M+ +D+ K G + +
Sbjct: 367 -AKGEETYLSGHKEN---------TKSFG--VEVKAQMQKEDANPIKDDGEGLQSCEKYD 414
Query: 173 LASQAIEELN------------SCELKGKKIKCSAAQAK----HRLFIGNVPRNWGEDDM 216
L Q EL + E + ++++ A Q K H +F+G + R+ E+D+
Sbjct: 415 LGEQGKVELVEEDPEEPPEETLALEEEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDL 474
Query: 217 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 276
RK +IG ++ + L K+ + N+N+G+AF+++ N A+ + +M NP
Sbjct: 475 RKVFQRIGE-IVEVRLHKN-SSTNKNKGYAFVKFANKENAKKALSEMKNPVIH------- 525
Query: 277 VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG--KITKVVIPPAKPGQER 334
+ ++ + L++ N+ T++ +K+ +G + + + P +
Sbjct: 526 -----GKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVESITLVPDVQHEGL 580
Query: 335 SR-YGFVHFAERSSAMKALKNTEKYEI 360
SR + F+ F+ + AM A K +K ++
Sbjct: 581 SRGFAFLEFSCHADAMLAFKRLQKPDV 607
Score = 38.9 bits (89), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
++V L +D T++ L+++F G+I +V + + Y FV FA + +A KAL
Sbjct: 460 IFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFANKENAKKALSEM 519
Query: 356 EKYEIDGQVLDCSLAKPQADQKT 378
+ I G+ C A P D T
Sbjct: 520 KNPVIHGK--RCGTA-PSEDNDT 539
>gi|350587467|ref|XP_003482419.1| PREDICTED: RNA-binding protein 47-like [Sus scrofa]
Length = 522
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 147/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHFA R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|359386142|gb|AEV43360.1| RNA recognition motif protein 1 [Citrus sinensis]
Length = 775
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 194/387 (50%), Gaps = 60/387 (15%)
Query: 28 ESEERVDLDEDN-----------DHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEE---E 73
E +ER+DLD++ D++++ E + +EV EE+ +E V EE E+ E
Sbjct: 88 EKDERLDLDDNEPEYEPEEYGGVDYDDKETEHEDVQEVGNEEDEHDDENVGEEEEDDLAE 147
Query: 74 EETEDVVD--------------------GIDAQKHYDGDEEMKVAESDKDDEKKKHAELL 113
E EDV + +DA++H D E + E++K E
Sbjct: 148 GEMEDVPEEHGQGEEEVENAGEEAERPEMVDAEEH-DHHEMFQ--------ERRKRKEF- 197
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
EV++GG+ D DDLR +GEVTEVR+M + + KG+AF+ F T E
Sbjct: 198 -------EVFVGGLDKDVVGDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQ 250
Query: 174 ASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIEL 232
A QA+ EL + + GK+ + +Q LF+GN+ + W ++ +++ + G V + L
Sbjct: 251 ARQAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTL 310
Query: 233 VKDPQNANQNRGFAFIEYYNHACA--EYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSA 289
V+D N NRGFAF+E+ + + A + R + + F +D A VS+AD +
Sbjct: 311 VEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA-KVSFADSFIDPGDEI 369
Query: 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
+QVK ++V LP +DR++EL ++G+ITK+ + P +R +GFV F +A+
Sbjct: 370 MAQVKTVFVDGLPASWDEDRVRELLKNYGEITKIELARNMPSAKRKDFGFVTFDTHDAAV 429
Query: 350 ---KALKNTEKYEIDGQV-LDCSLAKP 372
K++ N E E D + + L++P
Sbjct: 430 TCAKSINNAELGEGDNKAKVRARLSRP 456
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 136/307 (44%), Gaps = 46/307 (14%)
Query: 63 EEEVEEEVEEEEETE--DVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGS 120
E+EV+E V+E E+ E D+ D + + D DD++ +H ++ +
Sbjct: 77 EDEVKESVDEYEKDERLDLDDNEPEYE------PEEYGGVDYDDKETEHEDVQEV----- 125
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG--KDSGEAKGYAFVTFRTKELASQAI 178
G D DD+ ++GE E + +G +D E G ++
Sbjct: 126 -----GNEEDEHDDE------NVGEEEEDDLAEGEMEDVPEEHGQGEEEVENAGEEAERP 174
Query: 179 EELNSCELKGKKIKCSAAQAK-HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
E +++ E ++ + K +F+G + ++ DD+RK +++G V + L+ +PQ
Sbjct: 175 EMVDAEEHDHHEMFQERRKRKEFEVFVGGLDKDVVGDDLRKVFSQVGE-VTEVRLMMNPQ 233
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALY 297
+N+GFAF+ + A E +RQ ++ K P ++ + + + L+
Sbjct: 234 -TKKNKGFAFLRF---ATVEQARQAVTELK------NPVING---KQCGVTPSQDSDTLF 280
Query: 298 VKNLPKDITQDRLKELFAHHG----KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
+ N+ K T++ LKE H+G + +V G R + F+ F+ RS AM A K
Sbjct: 281 LGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRG-FAFLEFSSRSDAMDAFK 339
Query: 354 NTEKYEI 360
+K ++
Sbjct: 340 RLQKRDV 346
>gi|297725433|ref|NP_001175080.1| Os07g0180800 [Oryza sativa Japonica Group]
gi|255677562|dbj|BAH93808.1| Os07g0180800 [Oryza sativa Japonica Group]
Length = 650
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 138/264 (52%), Gaps = 5/264 (1%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++GG+ DA +DD+R GE+TEVR++ +G+ KGY FV +R A +AI E
Sbjct: 237 EVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRHAAQAKKAIAE 296
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNA 239
+ ++ GK + + R+F+GN+ + W ++D+ K + KIG + S+ L D N
Sbjct: 297 FGNVKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNP 356
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVK 299
NRGFAF+E A + +K+S V+WA+P N QVK+++V
Sbjct: 357 VCNRGFAFLELETSRDARMAYKKLSQKNAFGKGLNIRVAWAEPLNDPDEKDMQVKSIFVD 416
Query: 300 NLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359
+P +LKE+F HGKI VV+ P +R + F+++ R +A+ L++ +K E
Sbjct: 417 GIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRRDFAFINYITREAAISCLESFDKEE 476
Query: 360 IDGQ----VLDCSLAKPQADQKTS 379
+ SLAKP K +
Sbjct: 477 FSKNGSKVNIKVSLAKPAQQSKQT 500
>gi|118600907|gb|AAH34402.1| RBM47 protein [Homo sapiens]
gi|119613370|gb|EAW92964.1| RNA-binding protein, isoform CRA_a [Homo sapiens]
Length = 497
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 146/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|449432380|ref|XP_004133977.1| PREDICTED: uncharacterized protein LOC101208921 [Cucumis sativus]
Length = 788
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 125/411 (30%), Positives = 213/411 (51%), Gaps = 54/411 (13%)
Query: 30 EERVDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVV--------- 80
+ER+DL EDND E E +E+ +E +E+E+E +E+V+E V+ E E ED V
Sbjct: 126 DERLDL-EDNDPESEPDEDGGFEY--DEKEIE-QEDVQEVVDGEGEPEDNVGDEEGDMVE 181
Query: 81 -DGIDAQKHYDGD----------EEMKVAESDKDD------EKKKHAELLALPPHGSEVY 123
D DAQ+ +G+ E + ++D+D+ E++K E EV+
Sbjct: 182 EDVEDAQEDLEGEDDDQQGGEDHEHAGMVDADEDEHHEVVKERRKRKEF--------EVF 233
Query: 124 LGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS 183
+GG+ D ++DL+ ++GEVTEVR+M + + KG+AF+ F T E A +A+ EL +
Sbjct: 234 VGGLDKDVKEEDLKKVFSAVGEVTEVRLMMNPQTKKNKGFAFLRFATVEEAKRAVSELKN 293
Query: 184 CELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNANQN 242
+ GK+ + +Q LF+GN+ + W +D +++ + G V + LV+D N N
Sbjct: 294 PVINGKQCGVTPSQDSDTLFLGNICKTWKKDALKEKLKHYGVDNVEDLTLVEDSNNEGSN 353
Query: 243 RGFAFIEYYNHACA--EYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKALYVK 299
RGFAF+E+ + + A + R + + F +D A VS+AD + +QVK ++V
Sbjct: 354 RGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRPA-KVSFADSFIDPGDEIMAQVKTVFVD 412
Query: 300 NLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM---KALKNTE 356
+LP ++ ++ L +G+I K+ + P +R +GFV F +A+ K++ N+E
Sbjct: 413 SLPASWDEEFVRGLLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVSCAKSINNSE 472
Query: 357 KYEIDGQV-LDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAY 406
E D + + L++P Q+ G K A Y P G V G++
Sbjct: 473 LGEGDNKAKVRARLSRPL--QRGKG-----KHASRTDYWPGRTTGRVRGSW 516
>gi|301787079|ref|XP_002928955.1| PREDICTED: RNA-binding protein 47-like [Ailuropoda melanoleuca]
Length = 630
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 146/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 106 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKSEAKRAV 164
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 165 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 224
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 225 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 284
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 285 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFVSREDAVHAMNN 336
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 337 LNGTELEGSCLEVTLAKPVDKEQYS 361
>gi|119613372|gb|EAW92966.1| RNA-binding protein, isoform CRA_c [Homo sapiens]
Length = 514
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 146/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|397524560|ref|XP_003832258.1| PREDICTED: RNA-binding protein 47 isoform 1 [Pan paniscus]
gi|397524562|ref|XP_003832259.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan paniscus]
Length = 593
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 146/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|126272659|ref|XP_001363608.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Monodelphis
domestica]
Length = 586
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 143/264 (54%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ EVR+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELVPLCEKIGKIYEVRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ L++ F KPG ER + Y FVHF R A
Sbjct: 231 KILYVRNLMLSTSEETLEKEFNS-----------IKPGSVERVKKIRDYAFVHFNNRDDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
+ A+K +DG ++ +LAKP
Sbjct: 280 VNAMKALNGKVLDGSPIEVTLAKP 303
>gi|410957715|ref|XP_003985470.1| PREDICTED: RNA-binding protein 47 isoform 2 [Felis catus]
Length = 626
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 146/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 107 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 165
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 166 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 225
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 226 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 285
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 286 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFVSREDAVHAMNN 337
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 338 LNGTELEGSCLEVTLAKPVDKEQYS 362
>gi|281342615|gb|EFB18199.1| hypothetical protein PANDA_019026 [Ailuropoda melanoleuca]
Length = 594
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 146/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKSEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFVSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|126272657|ref|XP_001363520.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Monodelphis
domestica]
Length = 594
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 143/264 (54%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ EVR+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELVPLCEKIGKIYEVRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ L++ F KPG ER + Y FVHF R A
Sbjct: 231 KILYVRNLMLSTSEETLEKEFNS-----------IKPGSVERVKKIRDYAFVHFNNRDDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
+ A+K +DG ++ +LAKP
Sbjct: 280 VNAMKALNGKVLDGSPIEVTLAKP 303
>gi|338716787|ref|XP_003363516.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Equus
caballus]
Length = 589
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 159/294 (54%), Gaps = 22/294 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQKSALNPTYPPHLGY 399
++A+K +DG ++ +LAKP + + + G+ + + L Y LG+
Sbjct: 280 VEAMKALHGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQGEYTYSLGH 333
>gi|73995983|ref|XP_534776.2| PREDICTED: APOBEC1 complementation factor isoform 1 [Canis lupus
familiaris]
Length = 590
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 159/294 (54%), Gaps = 22/294 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF ++ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNRQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 DAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQKSALNPTYPPHLGY 399
++A+K +DG ++ +LAKP + + + G+ + S L Y LG+
Sbjct: 280 VEAMKALNGKMLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGSMLQGEYTYSLGH 333
>gi|196005657|ref|XP_002112695.1| hypothetical protein TRIADDRAFT_2319 [Trichoplax adhaerens]
gi|190584736|gb|EDV24805.1| hypothetical protein TRIADDRAFT_2319, partial [Trichoplax
adhaerens]
Length = 288
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 137/259 (52%), Gaps = 11/259 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP E+Y+G IPHDA +D+L ++ G++ E+R+M SG +GYAF+++ TKE A+
Sbjct: 31 PPQDCEIYIGKIPHDALEDELIPLLQTCGKIYELRLMIDPASGHNRGYAFLSYTTKEAAN 90
Query: 176 QAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
Q + + + K K + + RLFI +P+ ++++ +K+ G+ + +
Sbjct: 91 QCVRRYHGYSIRKDKPLTVIHSTPNVRLFISPIPKYMNKEEIYNKFSKLSDGLTEVIVYP 150
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--AESSAASQ 292
DP ++ RGFAF+EY +H A Y+R+K+ L V WA+ + ++
Sbjct: 151 DPDAKDKIRGFAFLEYVDHKAATYARRKLITDTVSLSGKVINVEWAESSKEPKDHVVGNK 210
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK +Y N+ + IT+D L F +G I ++ ++ Y F+ FA R SA+KA+
Sbjct: 211 VKEVYCGNIAEHITEDTLNTAFLQYGSIERI--------KKLHDYAFICFASRESALKAI 262
Query: 353 KNTEKYEIDGQVLDCSLAK 371
+ I+G +D LAK
Sbjct: 263 EGVRGTVINGCKVDVQLAK 281
>gi|197099430|ref|NP_001127604.1| RNA-binding protein 47 [Pongo abelii]
gi|55732443|emb|CAH92922.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 146/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|410927412|ref|XP_003977143.1| PREDICTED: probable RNA-binding protein 46-like [Takifugu rubripes]
Length = 484
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 150/267 (56%), Gaps = 13/267 (4%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + +GE +GYAFV + KE A +AI+
Sbjct: 76 CEVFVGKIPRDMYEDELVPLFERAGKLYEFRLMM-EFTGENRGYAFVMYTNKEAAQRAIQ 134
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
L++ +++ GK I + RLFIG++P+ +D++ + K+ GV+ + + +
Sbjct: 135 MLDNYKVRPGKFIGVCVSLDNCRLFIGSIPKEKTKDEVMAEMKKVTDGVVDVIMYPSSTD 194
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
++NRGFAF+EY +H A +R+K+ F+L + V WA+P ++ E +V+ +Y
Sbjct: 195 KSRNRGFAFVEYKSHKAAAMARRKLIPGTFQLWGQSIQVDWAEPEKDVEEEVMQRVRVIY 254
Query: 298 VKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
V+NL T++ L + F+H G + +V ++ + Y FVH+ R A+ AL
Sbjct: 255 VRNLMLSTTEETLFQEFSHFKPGSVERV--------KKLTDYAFVHYYCREDALAALAIM 306
Query: 356 EKYEIDGQVLDCSLAKPQADQKTSGGS 382
+IDG ++ LAKP ++ S GS
Sbjct: 307 NGVQIDGATIEVMLAKPATIKEDSNGS 333
>gi|338716785|ref|XP_001501741.3| PREDICTED: APOBEC1 complementation factor isoform 1 [Equus
caballus]
Length = 597
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 159/294 (54%), Gaps = 22/294 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQKSALNPTYPPHLGY 399
++A+K +DG ++ +LAKP + + + G+ + + L Y LG+
Sbjct: 280 VEAMKALHGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQGEYTYSLGH 333
>gi|410957713|ref|XP_003985469.1| PREDICTED: RNA-binding protein 47 isoform 1 [Felis catus]
Length = 589
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 146/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFVSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|73995985|ref|XP_861026.1| PREDICTED: APOBEC1 complementation factor isoform 3 [Canis lupus
familiaris]
Length = 582
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 159/294 (54%), Gaps = 22/294 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF ++ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNRQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 DAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQKSALNPTYPPHLGY 399
++A+K +DG ++ +LAKP + + + G+ + S L Y LG+
Sbjct: 280 VEAMKALNGKMLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGSMLQGEYTYSLGH 333
>gi|348524056|ref|XP_003449539.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Oreochromis
niloticus]
Length = 612
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 146/261 (55%), Gaps = 19/261 (7%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
GSE+++G +P D +D+L C+ G++ EVR+M + G +GYAFVTF K+ A A+
Sbjct: 56 GSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFN-GNNRGYAFVTFSNKQEARAAM 114
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 115 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTDGVVDVIVYPSAA 174
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ ++NRGFAF+EY +H A +R+K+ + +L +A V WA+P + + VK L
Sbjct: 175 DKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVEVDEDTMATVKIL 234
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKA 351
YV+NL T++ +++ F KPG ER + Y FVHF +R A+ A
Sbjct: 235 YVRNLMLQTTEETIEKEFNS-----------LKPGAVERVKKIRDYAFVHFTQREDAINA 283
Query: 352 LKNTEKYEIDGQVLDCSLAKP 372
+K +DG ++ +LAKP
Sbjct: 284 MKALNGKVVDGSPIEVTLAKP 304
>gi|20450941|gb|AAM21973.1| RNA-binding protein [Homo sapiens]
Length = 593
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 146/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|50950169|ref|NP_001002955.1| RNA-binding protein 47 [Canis lupus familiaris]
gi|75075043|sp|Q9XSR3.1|RBM47_CANFA RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
gi|5441611|emb|CAB46854.1| hypothetical protein [Canis lupus familiaris]
Length = 592
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 148/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFVT+ K A +A+
Sbjct: 72 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAKRAV 130
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 131 RELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 190
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 191 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 250
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHFA R A+ A+ +
Sbjct: 251 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVLAMNS 302
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 303 LNGTELEGSCLEVTLAKPVDKEQYS 327
>gi|449280244|gb|EMC87583.1| APOBEC1 complementation factor [Columba livia]
Length = 589
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 166/313 (53%), Gaps = 25/313 (7%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAKNAI 113
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVVDVIVYPSAA 173
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S VK L
Sbjct: 174 DKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKIL 233
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKA 351
YV+NL T++ +++ F + KPG ER + Y FVHF +R A++A
Sbjct: 234 YVRNLMLSTTEETIEKEFNN-----------IKPGAVERVKKIRDYAFVHFNKREDAVEA 282
Query: 352 LKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGA 408
+K +DG ++ +LAKP + + + G+ + + L Y G+ M A
Sbjct: 283 MKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQAEYTYAFGH-MYDPAAAY 341
Query: 409 LGA--GYVPAGFA 419
LGA Y P +A
Sbjct: 342 LGAPVFYAPQAYA 354
>gi|348524054|ref|XP_003449538.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Oreochromis
niloticus]
Length = 604
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 146/261 (55%), Gaps = 19/261 (7%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
GSE+++G +P D +D+L C+ G++ EVR+M + G +GYAFVTF K+ A A+
Sbjct: 56 GSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFN-GNNRGYAFVTFSNKQEARAAM 114
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 115 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTDGVVDVIVYPSAA 174
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ ++NRGFAF+EY +H A +R+K+ + +L +A V WA+P + + VK L
Sbjct: 175 DKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVEVDEDTMATVKIL 234
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKA 351
YV+NL T++ +++ F KPG ER + Y FVHF +R A+ A
Sbjct: 235 YVRNLMLQTTEETIEKEFNS-----------LKPGAVERVKKIRDYAFVHFTQREDAINA 283
Query: 352 LKNTEKYEIDGQVLDCSLAKP 372
+K +DG ++ +LAKP
Sbjct: 284 MKALNGKVVDGSPIEVTLAKP 304
>gi|160017954|sp|Q5R5P4.2|RBM47_PONAB RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 146/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|148833513|ref|NP_001092104.1| RNA-binding protein 47 isoform a [Homo sapiens]
gi|313104167|sp|A0AV96.2|RBM47_HUMAN RecName: Full=RNA-binding protein 47; AltName: Full=RNA-binding
motif protein 47
Length = 593
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 146/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|109074059|ref|XP_001095125.1| PREDICTED: RNA-binding protein 47 isoform 5 [Macaca mulatta]
gi|109074063|ref|XP_001095351.1| PREDICTED: RNA-binding protein 47 isoform 7 [Macaca mulatta]
gi|114593726|ref|XP_001145550.1| PREDICTED: RNA-binding protein 47 isoform 13 [Pan troglodytes]
gi|402869216|ref|XP_003898662.1| PREDICTED: RNA-binding protein 47 isoform 1 [Papio anubis]
gi|402869218|ref|XP_003898663.1| PREDICTED: RNA-binding protein 47 isoform 2 [Papio anubis]
gi|410038246|ref|XP_003950365.1| PREDICTED: RNA-binding protein 47 [Pan troglodytes]
gi|426344160|ref|XP_004038643.1| PREDICTED: RNA-binding protein 47 isoform 1 [Gorilla gorilla
gorilla]
gi|426344162|ref|XP_004038644.1| PREDICTED: RNA-binding protein 47 isoform 2 [Gorilla gorilla
gorilla]
gi|116496675|gb|AAI26262.1| RBM47 protein [Homo sapiens]
gi|313883194|gb|ADR83083.1| RNA binding motif protein 47 (RBM47), transcript variant 1
[synthetic construct]
gi|355687243|gb|EHH25827.1| RNA-binding motif protein 47 [Macaca mulatta]
gi|355749234|gb|EHH53633.1| RNA-binding motif protein 47 [Macaca fascicularis]
Length = 593
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 146/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|344279159|ref|XP_003411358.1| PREDICTED: RNA-binding protein 47-like isoform 1 [Loxodonta
africana]
Length = 593
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 143/258 (55%), Gaps = 13/258 (5%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 69 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 127
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 128 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 187
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 188 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 247
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 248 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 299
Query: 355 TEKYEIDGQVLDCSLAKP 372
E++G L+ +LAKP
Sbjct: 300 LNGTELEGSCLEVTLAKP 317
>gi|426345799|ref|XP_004040586.1| PREDICTED: probable RNA-binding protein 46 [Gorilla gorilla
gorilla]
Length = 514
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 143/270 (52%), Gaps = 19/270 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A
Sbjct: 38 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQ 96
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + +
Sbjct: 97 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 156
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ F+L + V WADP + + +V
Sbjct: 157 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRV 216
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL T++ +K F KPG ER + Y FVHF R A
Sbjct: 217 KVLYVRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDA 265
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
+ A+ IDG ++ +LAKP + T
Sbjct: 266 VAAMSVMNGKCIDGASIEVTLAKPVNKENT 295
>gi|55727108|emb|CAH90310.1| hypothetical protein [Pongo abelii]
Length = 593
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 143/258 (55%), Gaps = 13/258 (5%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYAGAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKP 372
E++G L+ +LAKP
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|397524566|ref|XP_003832261.1| PREDICTED: RNA-binding protein 47 isoform 4 [Pan paniscus]
Length = 555
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 146/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 32 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 90
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 91 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 150
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 151 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 210
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 211 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 262
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 263 LNGTELEGSCLEVTLAKPVDKEQYS 287
>gi|332219026|ref|XP_003258659.1| PREDICTED: RNA-binding protein 47 isoform 1 [Nomascus leucogenys]
gi|441663629|ref|XP_004091690.1| PREDICTED: RNA-binding protein 47 [Nomascus leucogenys]
Length = 593
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 146/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|332819357|ref|XP_001144567.2| PREDICTED: RNA-binding protein 47 isoform 1 [Pan troglodytes]
gi|402869222|ref|XP_003898665.1| PREDICTED: RNA-binding protein 47 isoform 4 [Papio anubis]
gi|426344164|ref|XP_004038645.1| PREDICTED: RNA-binding protein 47 isoform 3 [Gorilla gorilla
gorilla]
Length = 555
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 146/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 32 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 90
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 91 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 150
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 151 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 210
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 211 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 262
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 263 LNGTELEGSCLEVTLAKPVDKEQYS 287
>gi|221044912|dbj|BAH14133.1| unnamed protein product [Homo sapiens]
Length = 555
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 146/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 32 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 90
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 91 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 150
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 151 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 210
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 211 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 262
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 263 LNGTELEGSCLEVTLAKPVDKEQYS 287
>gi|8515877|gb|AAF76221.1|AF271789_1 APOBEC-1 complementation factor [Homo sapiens]
Length = 586
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNRKDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|47209668|emb|CAF95095.1| unnamed protein product [Tetraodon nigroviridis]
Length = 677
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 101/331 (30%), Positives = 171/331 (51%), Gaps = 26/331 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G IP D +D+L +S+G + E+R+M D G+ +GYAFV + K A
Sbjct: 86 PQRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTEKHEAK 144
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E++ G+ + ++ RLFIG +P+ +++ + V+K+ GVI + +
Sbjct: 145 RAVRELNNYEVRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVIDVIVYA 204
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + V
Sbjct: 205 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETV 264
Query: 294 KALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
K LYV+NL + +++ ++++F+ G + +V ++ Y FVHF R A+ A
Sbjct: 265 KILYVRNLMMETSEETIRKVFSQWNPGCVERV--------KKIRDYAFVHFNSRDDAVLA 316
Query: 352 LKNTEKYEIDGQVLDCSLAKP-----QADQKTSGGSNSQKSALNPTY-----PPHLGYGM 401
+ E++G ++ +LAKP + QK S G+ + A Y P L Y
Sbjct: 317 MNQLNGTEVEGSCIEVTLAKPVDKEQYSRQKASKGAAATPEATQQNYVYQCDPYTLAY-- 374
Query: 402 VGGAYGALGAGYVPAGFAQPMVYGRGAAPGG 432
G Y L G F + V GRG A G
Sbjct: 375 YGYPYNTL-IGPNREYFIKGTVRGRGRAVAG 404
>gi|397469479|ref|XP_003806379.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Pan paniscus]
Length = 594
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|6996658|gb|AAF34824.1|AF209192_1 Apobec-1 complementation factor [Homo sapiens]
Length = 586
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNRKDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|332219030|ref|XP_003258661.1| PREDICTED: RNA-binding protein 47 isoform 3 [Nomascus leucogenys]
Length = 555
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 146/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 32 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 90
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 91 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 150
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 151 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 210
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 211 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 262
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 263 LNGTELEGSCLEVTLAKPVDKEQYS 287
>gi|20357572|ref|NP_055391.2| APOBEC1 complementation factor isoform 1 [Homo sapiens]
gi|311771764|ref|NP_001185747.1| APOBEC1 complementation factor isoform 1 [Homo sapiens]
gi|8574043|emb|CAB94755.1| APOBEC-1 stimulating protein [Homo sapiens]
gi|119574519|gb|EAW54134.1| apobec-1 complementation factor, isoform CRA_b [Homo sapiens]
gi|119574521|gb|EAW54136.1| apobec-1 complementation factor, isoform CRA_b [Homo sapiens]
gi|158257396|dbj|BAF84671.1| unnamed protein product [Homo sapiens]
Length = 586
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|350592917|ref|XP_001925737.4| PREDICTED: APOBEC1 complementation factor isoform 1 [Sus scrofa]
Length = 662
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 159/296 (53%), Gaps = 22/296 (7%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQE 108
Query: 174 ASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
A AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAAS 291
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERS 346
VK LYV+NL +++ +++ F + KPG ER + Y FVHF R
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFTNRE 277
Query: 347 SAMKALKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQKSALNPTYPPHLGY 399
A++A+K +DG ++ +LAKP + + + G+ + + L Y LG+
Sbjct: 278 DAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQGEYTYSLGH 333
>gi|20357575|ref|NP_620310.1| APOBEC1 complementation factor isoform 2 [Homo sapiens]
gi|74761651|sp|Q9NQ94.1|A1CF_HUMAN RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|8574041|emb|CAB94754.1| APOBEC-1 stimulating protein [Homo sapiens]
gi|119574518|gb|EAW54133.1| apobec-1 complementation factor, isoform CRA_a [Homo sapiens]
gi|119574523|gb|EAW54138.1| apobec-1 complementation factor, isoform CRA_a [Homo sapiens]
gi|120659916|gb|AAI30520.1| APOBEC1 complementation factor [Homo sapiens]
Length = 594
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|351713281|gb|EHB16200.1| RNA-binding protein 47 [Heterocephalus glaber]
Length = 585
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 154/291 (52%), Gaps = 24/291 (8%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P G EV++G IP D +D+L +++G + E+R+M D G+ +GYAF+ + K
Sbjct: 65 AHPQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFIMYCHKHE 123
Query: 174 ASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
A +A+ ELN+ E++ G+ + + RLFIG +P+ R+ + K+ GV+ + +
Sbjct: 124 AKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKL----KKREEIAKVTEGVLDVIM 179
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAAS 291
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + +
Sbjct: 180 YASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVME 239
Query: 292 QVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
VK LYV+NL + T+D +K+ F G + +V ++ Y FVHF R A+
Sbjct: 240 TVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAV 291
Query: 350 KALKNTEKYEIDGQVLDCSLAKPQADQKTS-------GGSNSQKSALNPTY 393
A+ N E++G L+ +LAKP ++ S GG ++ A P+Y
Sbjct: 292 HAMSNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGVAEAVAQPPSY 342
>gi|397469477|ref|XP_003806378.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Pan paniscus]
Length = 594
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 60 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVEAK 118
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 119 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 178
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 179 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSV 238
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 239 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 287
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 288 VEAMKALNGKVLDGSPIEVTLAKP 311
>gi|194383568|dbj|BAG64755.1| unnamed protein product [Homo sapiens]
Length = 587
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 45 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVEAK 103
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 104 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 163
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 164 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSV 223
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 224 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 272
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 273 VEAMKALNGKVLDGSPIEVTLAKP 296
>gi|397524564|ref|XP_003832260.1| PREDICTED: RNA-binding protein 47 isoform 3 [Pan paniscus]
Length = 524
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 146/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|20357578|ref|NP_620311.1| APOBEC1 complementation factor isoform 3 [Homo sapiens]
gi|311771768|ref|NP_001185749.1| APOBEC1 complementation factor isoform 3 [Homo sapiens]
gi|119574520|gb|EAW54135.1| apobec-1 complementation factor, isoform CRA_c [Homo sapiens]
gi|119574522|gb|EAW54137.1| apobec-1 complementation factor, isoform CRA_c [Homo sapiens]
gi|219521544|gb|AAI44197.1| A1CF protein [Homo sapiens]
Length = 594
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 60 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVEAK 118
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 119 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 178
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 179 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSV 238
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 239 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 287
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 288 VEAMKALNGKVLDGSPIEVTLAKP 311
>gi|311771766|ref|NP_001185748.1| APOBEC1 complementation factor isoform 4 [Homo sapiens]
Length = 602
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 60 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVEAK 118
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 119 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 178
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 179 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSV 238
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 239 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 287
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 288 VEAMKALNGKVLDGSPIEVTLAKP 311
>gi|148833511|ref|NP_061900.2| RNA-binding protein 47 isoform b [Homo sapiens]
Length = 524
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 146/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|109074069|ref|XP_001094904.1| PREDICTED: RNA-binding protein 47 isoform 3 [Macaca mulatta]
gi|114593728|ref|XP_001144637.1| PREDICTED: RNA-binding protein 47 isoform 2 [Pan troglodytes]
gi|402869220|ref|XP_003898664.1| PREDICTED: RNA-binding protein 47 isoform 3 [Papio anubis]
gi|426344166|ref|XP_004038646.1| PREDICTED: RNA-binding protein 47 isoform 4 [Gorilla gorilla
gorilla]
gi|119613373|gb|EAW92967.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
gi|119613375|gb|EAW92969.1| RNA-binding protein, isoform CRA_d [Homo sapiens]
Length = 524
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 146/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|344279161|ref|XP_003411359.1| PREDICTED: RNA-binding protein 47-like isoform 2 [Loxodonta
africana]
Length = 524
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 143/258 (55%), Gaps = 13/258 (5%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 69 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAKRAV 127
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 128 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 187
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 188 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 247
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 248 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 299
Query: 355 TEKYEIDGQVLDCSLAKP 372
E++G L+ +LAKP
Sbjct: 300 LNGTELEGSCLEVTLAKP 317
>gi|68369596|ref|XP_685178.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Danio rerio]
Length = 594
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 145/264 (54%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P GSE+++G +P D +D+L C+ G++ EVR+M + G +GYAFVTF TK+ A
Sbjct: 52 PERGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFN-GNNRGYAFVTFSTKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
A+++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVLDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY H A +R+K+ + +L + V WA+P + + V
Sbjct: 171 SAADKAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMATV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL T++ +++ F KPG ER + Y FVHF++R A
Sbjct: 231 KILYVRNLMLPTTEETIEKEFNS-----------IKPGAVERVKKIRDYAFVHFSQREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
+ A+ IDG ++ +LAKP
Sbjct: 280 INAMNALNGKVIDGSPIEVTLAKP 303
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
P E S + ++V LP+D+ +D L L GKI +V + G R Y FV
Sbjct: 44 PPGWEGSPPERGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFNGNNRG-YAFVT 102
Query: 342 FAERSSAMKALKNTEKYEI-DGQVL 365
F+ + A A+K YEI +G++L
Sbjct: 103 FSTKQEAKNAMKQLNNYEIRNGRLL 127
>gi|332219028|ref|XP_003258660.1| PREDICTED: RNA-binding protein 47 isoform 2 [Nomascus leucogenys]
Length = 524
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 146/265 (55%), Gaps = 13/265 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTS 379
E++G L+ +LAKP ++ S
Sbjct: 301 LNGTELEGSCLEVTLAKPVDKEQYS 325
>gi|68369598|ref|XP_707799.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Danio rerio]
Length = 586
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 145/264 (54%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P GSE+++G +P D +D+L C+ G++ EVR+M + G +GYAFVTF TK+ A
Sbjct: 52 PERGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFN-GNNRGYAFVTFSTKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
A+++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVLDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY H A +R+K+ + +L + V WA+P + + V
Sbjct: 171 SAADKAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMATV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL T++ +++ F KPG ER + Y FVHF++R A
Sbjct: 231 KILYVRNLMLPTTEETIEKEFNS-----------IKPGAVERVKKIRDYAFVHFSQREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
+ A+ IDG ++ +LAKP
Sbjct: 280 INAMNALNGKVIDGSPIEVTLAKP 303
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
P E S + ++V LP+D+ +D L L GKI +V + G R Y FV
Sbjct: 44 PPGWEGSPPERGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFNGNNRG-YAFVT 102
Query: 342 FAERSSAMKALKNTEKYEI-DGQVL 365
F+ + A A+K YEI +G++L
Sbjct: 103 FSTKQEAKNAMKQLNNYEIRNGRLL 127
>gi|351715567|gb|EHB18486.1| APOBEC1 complementation factor [Heterocephalus glaber]
Length = 588
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 155/289 (53%), Gaps = 19/289 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLFIG +P+ +++ V K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFIGGIPKTKKREEILSEVKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL +++ ++ F + KP E Y FVHF++R A++A+K
Sbjct: 231 KILYVRNLMLSTSEEIIEREFNN-----------IKP--EIWDYAFVHFSKREDAVEAMK 277
Query: 354 NTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQKSALNPTYPPHLGY 399
+DG ++ +LAKP + + + G+ + + L Y LG+
Sbjct: 278 ALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQGEYTYSLGH 326
>gi|449519174|ref|XP_004166610.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101228505 [Cucumis sativus]
Length = 788
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 124/411 (30%), Positives = 212/411 (51%), Gaps = 54/411 (13%)
Query: 30 EERVDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVV--------- 80
+ER+DL EDND E E +E+ +E +E+E+E +E+V+E V+ E ED V
Sbjct: 126 DERLDL-EDNDPESEPDEDGGFEY--DEKEIE-QEDVQEVVDXGGEPEDNVGDEEGDMVE 181
Query: 81 -DGIDAQKHYDGD----------EEMKVAESDKDD------EKKKHAELLALPPHGSEVY 123
D DAQ+ +G+ E + ++D+D+ E++K E EV+
Sbjct: 182 EDVEDAQEDLEGEDDDQQGGEDHEHAGMVDADEDEHHEVVKERRKRKEF--------EVF 233
Query: 124 LGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNS 183
+GG+ D ++DL+ ++GEVTEVR+M + + KG+AF+ F T E A +A+ EL +
Sbjct: 234 VGGLDKDVKEEDLKKVFSAVGEVTEVRLMMNPQTKKNKGFAFLRFATVEEAKRAVSELKN 293
Query: 184 CELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNANQN 242
+ GK+ + +Q LF+GN+ + W +D +++ + G V + LV+D N N
Sbjct: 294 PVINGKQCGVTPSQDSDTLFLGNICKTWKKDALKEKLKHYGVDNVEDLTLVEDSNNEGSN 353
Query: 243 RGFAFIEYYNHACA--EYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKALYVK 299
RGFAF+E+ + + A + R + + F +D A VS+AD + +QVK ++V
Sbjct: 354 RGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRPA-KVSFADSFIDPGDEIMAQVKTVFVD 412
Query: 300 NLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM---KALKNTE 356
+LP ++ ++ L +G+I K+ + P +R +GFV F +A+ K++ N+E
Sbjct: 413 SLPASWDEEFVRGLLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVSCAKSINNSE 472
Query: 357 KYEIDGQV-LDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAY 406
E D + + L++P Q+ G K A Y P G V G++
Sbjct: 473 LGEGDNKAKVRARLSRPL--QRGKG-----KHASRTDYWPGRTTGRVRGSW 516
>gi|403260038|ref|XP_003922495.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Saimiri
boliviensis boliviensis]
Length = 593
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|332212196|ref|XP_003255205.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Nomascus
leucogenys]
Length = 587
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|197099260|ref|NP_001127437.1| APOBEC1 complementation factor [Pongo abelii]
gi|75070678|sp|Q5R9H4.1|A1CF_PONAB RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|55729715|emb|CAH91586.1| hypothetical protein [Pongo abelii]
Length = 587
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|355562596|gb|EHH19190.1| hypothetical protein EGK_19855 [Macaca mulatta]
Length = 592
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|296220667|ref|XP_002756404.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Callithrix
jacchus]
Length = 594
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|109089789|ref|XP_001100059.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Macaca
mulatta]
gi|402880832|ref|XP_003903993.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Papio anubis]
Length = 592
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|395820737|ref|XP_003783717.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Otolemur
garnettii]
Length = 592
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 147/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMRKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ ++NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNRDDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 IEAMKALNGKVLDGSPIEVTLAKP 303
>gi|343960931|dbj|BAK62055.1| heterogeneous nuclear ribonucleoprotein R [Pan troglodytes]
Length = 497
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 142/237 (59%), Gaps = 13/237 (5%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
+V++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A +A++
Sbjct: 27 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 86
Query: 181 LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRK---AVTKIGPGVISIELVKDP 236
+S E++ GK + + A +RLF+G++P+N ++++ + VT + G++ + L P
Sbjct: 87 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQP 146
Query: 237 QNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKA 295
+ +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK
Sbjct: 147 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKV 206
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 207 LFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 255
>gi|403260036|ref|XP_003922494.1| PREDICTED: APOBEC1 complementation factor isoform 1 [Saimiri
boliviensis boliviensis]
Length = 559
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 26 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLEAK 84
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 85 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 144
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 145 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 204
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 205 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 253
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 254 VEAMKALNGKVLDGSPIEVTLAKP 277
>gi|395820739|ref|XP_003783718.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Otolemur
garnettii]
Length = 584
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 147/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMRKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ ++NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNRDDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 IEAMKALNGKVLDGSPIEVTLAKP 303
>gi|296220673|ref|XP_002756407.1| PREDICTED: APOBEC1 complementation factor isoform 4 [Callithrix
jacchus]
Length = 560
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 26 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLEAK 84
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 85 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 144
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 145 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 204
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 205 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 253
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 254 VEAMKALNGKVLDGSPIEVTLAKP 277
>gi|221129841|ref|XP_002156950.1| PREDICTED: APOBEC1 complementation factor-like [Hydra
magnipapillata]
Length = 598
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 104/374 (27%), Positives = 182/374 (48%), Gaps = 43/374 (11%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G +P D +D+L + +G + E+R+M + G+ +GY FV + + A
Sbjct: 84 PPRGCEVFVGKLPRDCYEDELVPVFEKVGTIYELRLMMDYN-GQNRGYGFVIYLSSRDAQ 142
Query: 176 QAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ LN+ E+ K + I + RLFIG +P+ +D++ + ++K+ V+++ +
Sbjct: 143 RAVRTLNNYEIRKSRLIGVCHSVDNCRLFIGGIPKKVKKDEILEEISKVTDSVVNVIVYP 202
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ ++NRGFAF+EY H A +R+K+ N K +L + V WA+P ++ + QV
Sbjct: 203 SATDKSKNRGFAFVEYNCHRSAAMARRKLMNGKIQLWGHPIAVDWAEPEQDIDEDIMDQV 262
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LY++NL + T++ ++ LF ++ +V ++ Y FVHF R A AL+
Sbjct: 263 KVLYIRNLQLNTTEETIENLFKKFAEVERV--------KKIKDYCFVHFVTREGARLALE 314
Query: 354 NTEKY---EIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALG 410
+ + IDG ++ +LAKP D++ + + + Y
Sbjct: 315 SVKANNGESIDGAKIEVTLAKP-VDKEHYRQQKAVAKLMQ-----------MANQY---- 358
Query: 411 AGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGA 470
++P+ F GG+ P LP ++G P + R GR A
Sbjct: 359 -QHIPS-FPHDFFPFNNQMHGGLMYPPPFLPSSQVGV----------RPLARGR-GRTAA 405
Query: 471 GSSSSGGRRSTDNG 484
GS S+GGR NG
Sbjct: 406 GSRSAGGRAYILNG 419
>gi|410895527|ref|XP_003961251.1| PREDICTED: APOBEC1 complementation factor-like [Takifugu rubripes]
Length = 613
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 145/258 (56%), Gaps = 13/258 (5%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
GSE+++G +P D +D+L C+ G++ EVR+M SG +GYAFVTF K+ A A+
Sbjct: 56 GSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMM-DFSGNNRGYAFVTFSNKQEAKAAM 114
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 115 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEIMCEMRKVTDGVLDVIVYPSAA 174
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ ++NRGFAF+EY +H A +R+K+ + +L +A V WA+P + + VK L
Sbjct: 175 DKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAIAVDWAEPEVEVDEDTMATVKIL 234
Query: 297 YVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL T++ +++ F G + +V ++ Y FVHF +R A+ A+
Sbjct: 235 YVRNLMLQTTEETIEKEFNSLKQGAVERV--------KKIRDYAFVHFTQREDAIHAMNA 286
Query: 355 TEKYEIDGQVLDCSLAKP 372
+DG ++ +LAKP
Sbjct: 287 LNGKVVDGSPIEVTLAKP 304
>gi|8515879|gb|AAF76222.1|AF271790_1 APOBEC-1 complementation factor related protein [Homo sapiens]
Length = 569
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 35 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVEAK 93
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 94 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 153
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 154 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSV 213
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 214 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNRKDA 262
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 263 VEAMKALNGKVLDGSPIEVTLAKP 286
>gi|222636546|gb|EEE66678.1| hypothetical protein OsJ_23325 [Oryza sativa Japonica Group]
Length = 345
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 138/264 (52%), Gaps = 5/264 (1%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++GG+ DA +DD+R GE+TEVR++ +G+ KGY FV +R A +AI E
Sbjct: 11 EVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRHAAQAKKAIAE 70
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNA 239
+ ++ GK + + R+F+GN+ + W ++D+ K + KIG + S+ L D N
Sbjct: 71 FGNVKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNP 130
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVK 299
NRGFAF+E A + +K+S V+WA+P N QVK+++V
Sbjct: 131 VCNRGFAFLELETSRDARMAYKKLSQKNAFGKGLNIRVAWAEPLNDPDEKDMQVKSIFVD 190
Query: 300 NLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359
+P +LKE+F HGKI VV+ P +R + F+++ R +A+ L++ +K E
Sbjct: 191 GIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRRDFAFINYITREAAISCLESFDKEE 250
Query: 360 IDGQ----VLDCSLAKPQADQKTS 379
+ SLAKP K +
Sbjct: 251 FSKNGSKVNIKVSLAKPAQQSKQT 274
>gi|297301400|ref|XP_001100328.2| PREDICTED: APOBEC1 complementation factor isoform 3 [Macaca
mulatta]
gi|402880834|ref|XP_003903994.1| PREDICTED: APOBEC1 complementation factor isoform 2 [Papio anubis]
Length = 558
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 26 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLEAK 84
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 85 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 144
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 145 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 204
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 205 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 253
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 254 VEAMKALNGKVLDGSPIEVTLAKP 277
>gi|291404365|ref|XP_002718412.1| PREDICTED: apobec-1 complementation factor [Oryctolagus cuniculus]
Length = 596
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 158/294 (53%), Gaps = 22/294 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPICEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSLV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------VKPGAVERVKKIRDYAFVHFSHREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQKSALNPTYPPHLGY 399
++A+K +DG ++ +LAKP + + + G+ + + L Y LG+
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRATMLQGDYTYSLGH 333
>gi|348575664|ref|XP_003473608.1| PREDICTED: APOBEC1 complementation factor-like [Cavia porcellus]
Length = 594
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEIIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|327279356|ref|XP_003224422.1| PREDICTED: APOBEC1 complementation factor-like [Anolis
carolinensis]
Length = 589
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 143/261 (54%), Gaps = 19/261 (7%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEARNAI 113
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
+LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 114 RQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEIKKVTDGVVDVIVYPSAA 173
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S VK L
Sbjct: 174 DKAKNRGFAFVEYGSHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSAVKIL 233
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKA 351
YV+NL T++ +++ F+ KPG ER + Y FVHF R A++A
Sbjct: 234 YVRNLMLSTTEETIEKEFSS-----------IKPGSVERVKKIRDYAFVHFNNREDAVEA 282
Query: 352 LKNTEKYEIDGQVLDCSLAKP 372
+K +DG + +LAKP
Sbjct: 283 MKVLNGKMVDGSPIKVTLAKP 303
>gi|7020253|dbj|BAA91049.1| unnamed protein product [Homo sapiens]
Length = 524
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 142/258 (55%), Gaps = 13/258 (5%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G E+R+M D G+ +GYAFV + K A +A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVGRTYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA 188
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK L
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKIL 248
Query: 297 YVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL + T+D +K+ F G + +V ++ Y FVHF R A+ A+ N
Sbjct: 249 YVRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 355 TEKYEIDGQVLDCSLAKP 372
E++G L+ +LAKP
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>gi|363735088|ref|XP_421561.3| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Gallus
gallus]
Length = 589
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 145/258 (56%), Gaps = 13/258 (5%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEARNAI 113
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVVDVIVYPSAA 173
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S VK L
Sbjct: 174 DKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKIL 233
Query: 297 YVKNLPKDITQDRLKELFAH--HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL T++ +++ F + G + +V ++ Y FVHF +R A+ A+K
Sbjct: 234 YVRNLMLSTTEETIEKEFNNIKQGAVERV--------KKIRDYAFVHFNKREDAVHAMKA 285
Query: 355 TEKYEIDGQVLDCSLAKP 372
+DG ++ +LAKP
Sbjct: 286 LNGKVLDGSPIEVTLAKP 303
>gi|313212894|emb|CBY36802.1| unnamed protein product [Oikopleura dioica]
Length = 542
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 163/309 (52%), Gaps = 12/309 (3%)
Query: 97 VAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKD 156
V + + K + L P G+E+++G +P D +D+L +S G E+R+M +
Sbjct: 52 VMKQENGQRKYTNPALTGKPEKGTEIFIGKLPRDLFEDELYPVLESYGPAFELRMMLDFN 111
Query: 157 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 215
G +G+ FVT++T+ + A++ +N+ E+ KG+ + + RLF+G +P++ D+
Sbjct: 112 -GNNRGFCFVTYQTRNESHAALKGINNLEIRKGRLLGACQSVDNCRLFVGGIPKSKKRDE 170
Query: 216 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 275
+ + + K+ GV+ + + + ++NRGF+F+EY +H A +R+K+ + +L +
Sbjct: 171 IMEEMKKVTEGVVDVIVYPSAADKSKNRGFSFVEYKDHKAAAMARRKLMPGRIQLWGHQI 230
Query: 276 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT-KVVIPPAKPGQE 333
V WA+P E S VK LYV+NL ++D L+ FA K+T K I K ++
Sbjct: 231 AVDWAEPEIEVEESVMETVKILYVRNLMLHTSEDTLEAAFA---KVTGKGTIERVKKIRD 287
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP-QADQKTSGGSNSQKSALN-P 391
Y FVHF R +A+KA+K IDG +++ LAKP D S++ + P
Sbjct: 288 ---YAFVHFNTRDNALKAMKELNNGMIDGALVEVVLAKPVDRDSYVRHSRASERKVIQAP 344
Query: 392 TYPPHLGYG 400
P L YG
Sbjct: 345 QMPMLLAYG 353
>gi|363735090|ref|XP_003641506.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Gallus
gallus]
Length = 581
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 145/258 (56%), Gaps = 13/258 (5%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEARNAI 113
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVVDVIVYPSAA 173
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S VK L
Sbjct: 174 DKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKIL 233
Query: 297 YVKNLPKDITQDRLKELFAH--HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
YV+NL T++ +++ F + G + +V ++ Y FVHF +R A+ A+K
Sbjct: 234 YVRNLMLSTTEETIEKEFNNIKQGAVERV--------KKIRDYAFVHFNKREDAVHAMKA 285
Query: 355 TEKYEIDGQVLDCSLAKP 372
+DG ++ +LAKP
Sbjct: 286 LNGKVLDGSPIEVTLAKP 303
>gi|218199186|gb|EEC81613.1| hypothetical protein OsI_25123 [Oryza sativa Indica Group]
Length = 370
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 131/241 (54%), Gaps = 1/241 (0%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++GG+ DA +DD+R GE+TEVR++ +G+ KGY FV +R A +AI E
Sbjct: 11 EVFVGGLHRDAKEDDVRAVFAKAGEITEVRMIMNPLAGKNKGYCFVRYRHAAQAKKAIAE 70
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNA 239
+ ++ GK + + R+F+GN+ + W ++D+ K + KIG + S+ L D N
Sbjct: 71 FGNAKICGKLCRAAVPVGNDRIFLGNINKKWKKEDVIKQLKKIGIENIDSVTLKSDSNNP 130
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVK 299
NRGFAF+E A + +K+S V+WA+P N +QVK+++V
Sbjct: 131 VCNRGFAFLELETSRDARMAYKKLSQKNAFGKSLNIRVAWAEPLNDPDEKDAQVKSIFVD 190
Query: 300 NLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359
+P +LKE+F HGKI VV+ P +R + F+++ R +A+ L++ +K E
Sbjct: 191 GIPTSWDHAQLKEIFKKHGKIESVVLSRDMPSAKRRDFAFINYITREAAISCLESFDKEE 250
Query: 360 I 360
Sbjct: 251 F 251
>gi|410974963|ref|XP_003993908.1| PREDICTED: LOW QUALITY PROTEIN: APOBEC1 complementation factor
[Felis catus]
Length = 592
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 148/264 (56%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ +G++ E+R+M + G +GYAFVTF ++ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKMGKIYEMRMMMDFN-GNNRGYAFVTFSNRQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 DAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ ++NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKSRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSSREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|321478600|gb|EFX89557.1| hypothetical protein DAPPUDRAFT_24221 [Daphnia pulex]
Length = 290
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 143/256 (55%), Gaps = 9/256 (3%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G+E+++G +P D +D+L +IG + E+R+M SG +G+AF+ F ++ A++AI
Sbjct: 41 GTEIFVGKLPRDVFEDELYRIFSTIGPIYELRLMMD-FSGSNRGFAFIQFAHRQDANRAI 99
Query: 179 EELNSCELKGKK-IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
+ +++ EL+ + I + RLFIG +P+ ++++ + ++ GV + +
Sbjct: 100 QLMDNYELRPRHHIGVVKSIDNCRLFIGGIPKTKSREEIQGEMERLTEGVTKVIVYSSIT 159
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN-AESSAASQVKAL 296
+ +NRGFAF+EY NH A +R+K+ + +L V WA+P N E SQV L
Sbjct: 160 DKTKNRGFAFVEYINHRAASKARRKLIPDRIQLWGKEIAVDWAEPENEIEEDVMSQVTVL 219
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
YV+NL T+ L+ELF +++ + K ++ + F+HF+ R A KA++N
Sbjct: 220 YVRNLSLTTTEQVLRELF---NRVSDDNVQKLKMMRD---FAFIHFSSREKAEKAMRNMN 273
Query: 357 KYEIDGQVLDCSLAKP 372
EI+G ++ + AKP
Sbjct: 274 HTEINGTTIEITWAKP 289
>gi|449504773|ref|XP_002187149.2| PREDICTED: APOBEC1 complementation factor [Taeniopygia guttata]
Length = 581
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 112/370 (30%), Positives = 181/370 (48%), Gaps = 44/370 (11%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAKNAI 113
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
+ LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 114 KTLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVVDVIVYPSAA 173
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S VK L
Sbjct: 174 DKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKIL 233
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKA 351
YV+NL T++ +++ F KPG ER + Y FVHF +R A++A
Sbjct: 234 YVRNLMLSTTEETIEKEFNS-----------IKPGAVERVKKIRDYAFVHFNKREHAVEA 282
Query: 352 LKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGA 408
+K +DG ++ +LAKP + + + G+ + L Y LG+ +
Sbjct: 283 MKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRAPVLQGDYTYTLGH-LYDPTAAY 341
Query: 409 LGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRG 468
LGA P+ Y AP A +P L G G + PP S RG
Sbjct: 342 LGA---------PVFY----APQAYAAIPNLHFPAAKGL-----GSRSILRPP---SVRG 380
Query: 469 GAGSSSSGGR 478
AG GGR
Sbjct: 381 AAGVRGLGGR 390
>gi|356502130|ref|XP_003519874.1| PREDICTED: uncharacterized protein LOC100784338 [Glycine max]
Length = 884
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 139/244 (56%), Gaps = 4/244 (1%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
E+++GG+ DA+++DLR + IGE+ EVR+ K + + KGYAFV F KE A +A+ E
Sbjct: 390 EIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFSDKEHAKKALSE 449
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNA 239
+ + + GK+ + ++ LF+GN+ W ++ +++ + G GV +I LV D Q+
Sbjct: 450 MKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVENIMLVPDVQHE 509
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPK--FKLDDNAPTVSWADP-RNAESSAASQVKAL 296
+ GFAF+E+ HA A + +++ P F + V++A+P R + +QVK++
Sbjct: 510 GLSWGFAFLEFSCHADAMLAYKRLQKPDVMFGHAERTAKVAFAEPIREPDPEIMAQVKSV 569
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
++ LP +D ++ELF +G++ ++V+ +R YGFV F+ +A+ +
Sbjct: 570 FINGLPPHWDEDHVRELFKSYGEVVRIVLARNMSSAKRKDYGFVDFSTHEAAVACVDGVN 629
Query: 357 KYEI 360
K E+
Sbjct: 630 KSEL 633
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 126/301 (41%), Gaps = 60/301 (19%)
Query: 91 GDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVR 150
G+ E+K + DK EK K E G E L G ++ +S G E +
Sbjct: 267 GNVELKEQKGDKGKEKLKEQE--PEKAKGEETNLFGHEENS---------ESFGVEGEAQ 315
Query: 151 IMKG-----KDSGEAKGYAFVTFRTKELASQAIEEL-------------------NSCEL 186
+ K KD GE +L Q EL ++ E
Sbjct: 316 MQKEDANPIKDGGEGPKIG----ENSDLGEQGKVELVEDPEENPEEDPEEPPEETSALEE 371
Query: 187 KGKKIKCSAAQAK----HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQN 242
+ ++++ A Q K H +F+G + R+ E+D+RK +IG ++ + L K+ + N+N
Sbjct: 372 EHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGE-IVEVRLHKN-SSTNKN 429
Query: 243 RGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLP 302
+G+AF+++ + A+ + +M NP + ++ + L++ N+
Sbjct: 430 KGYAFVKFSDKEHAKKALSEMKNPVIH------------GKRCGTAPSEDNDTLFLGNIC 477
Query: 303 KDITQDRLKELFAHHG--KITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYE 359
T++ +K+ +G + +++ P + S + F+ F+ + AM A K +K +
Sbjct: 478 NTWTKEAIKQKLKDYGIEGVENIMLVPDVQHEGLSWGFAFLEFSCHADAMLAYKRLQKPD 537
Query: 360 I 360
+
Sbjct: 538 V 538
>gi|168034648|ref|XP_001769824.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678933|gb|EDQ65386.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 281
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 145/259 (55%), Gaps = 16/259 (6%)
Query: 105 EKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYA 164
E++KH +L EV++GG+ + ++++L +G+V EVR+MK +G+ KGYA
Sbjct: 11 ERRKHKKL--------EVFVGGLDKETTEEELESVFGRVGDVVEVRLMKNAQTGKNKGYA 62
Query: 165 FVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG 224
F+ F + +A +A +L E++G+ ++ LF+GN+ + W ++ + + + K
Sbjct: 63 FIRFASAAIAKRASHDLERVEIRGRSCGVLPSEENDTLFLGNISKLWKKETVLETLKKFA 122
Query: 225 -PGVISIELVKDPQNANQNRGFAFIEYYNH--ACAEYSRQKMSNPKFKLDDNAPTVSWAD 281
V I L++DPQ NRGFAFIE+ H A + R + ++ F D +A ++WA
Sbjct: 123 IENVEDITLMEDPQLEGVNRGFAFIEFNTHKEALNAFRRLQQADAVFGTDRSAK-IAWAQ 181
Query: 282 PRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFV 340
P N + SQVK+++V +P + ++KELF +G + ++V+ +R +GFV
Sbjct: 182 PLNEPDEDIMSQVKSVFVDGMPPTWDERKVKELFNKYGAVERIVLARNMLSAKRKDFGFV 241
Query: 341 HFAERSSAM---KALKNTE 356
++ ER +A+ AL NTE
Sbjct: 242 NYVERDAALLCIDALNNTE 260
>gi|223649326|gb|ACN11421.1| Heterogeneous nuclear ribonucleoprotein R [Salmo salar]
Length = 628
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 144/256 (56%), Gaps = 11/256 (4%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+ F +K+
Sbjct: 161 AQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFINFCSKDA 220
Query: 174 ASQAIEELNSCELKGKK-IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
A++A++ ++ E++ +K + + A +RLF+G++P+N + + +K+ G+ + L
Sbjct: 221 AAEAVKLCDNYEIRSRKHLGVCISVANNRLFVGSIPKNKTRESILDDFSKVTEGLQEVIL 280
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS--AA 290
P + NRGF F+EY +H A +R+ + + K + N TV WA+P + A
Sbjct: 281 YHQPDDKETNRGFCFLEYEDHKSAAQARRCLMSGKVMVWGNPVTVEWANPVTERDTDVMA 340
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
+Q K L+V+ L +T++ L + F+ GK+ +V + Y FVHF +R +A+K
Sbjct: 341 NQAKVLFVRKLATSVTEELLVKTFSAFGKLERVY--------KLKDYAFVHFEDRDAAVK 392
Query: 351 ALKNTEKYEIDGQVLD 366
A+ + E+ G+ ++
Sbjct: 393 AMVDMNGKELGGEAIE 408
>gi|313239224|emb|CBY14179.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 161/320 (50%), Gaps = 33/320 (10%)
Query: 63 EEEVEEEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEV 122
E +++E + + DV G Q+ Y G V SDK+ P G+EV
Sbjct: 127 EAKIKELLNRTKYNLDVTTG---QRKYGGPPPKSV--SDKEQ-----------PAVGAEV 170
Query: 123 YLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN 182
++G IP D +D+L + G V + R+M +G+ +GYAF++F A + +E +
Sbjct: 171 FIGKIPRDMFEDELVPLFEKCGLVWDFRLMMDPMTGQNRGYAFLSFVELSAARKCVEMYD 230
Query: 183 SCELKGKK-IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN- 240
E++ K+ + + +Q +RLF+G++P+ + ++ +K G+ + L + N
Sbjct: 231 RFEIRSKRELHVTISQPNNRLFVGSIPKTKTKQEILDEFSKHTTGLTDVILYYQVEEKNK 290
Query: 241 -----QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN-APTVSWADPRNAES-SAASQV 293
+NRGF F+EY H A +R+++ + + K +N TV WADP N + +V
Sbjct: 291 GSGLQKNRGFCFLEYETHQAASQARRRLLSGRVKAWNNLIVTVDWADPINTPADDIMDKV 350
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYVKNL +++D + + FA G+I KV ++ Y FVHF R A A+
Sbjct: 351 KVLYVKNLATCVSEDIVSQTFAAFGEIEKV--------KKLKDYAFVHFKNRDEARSAMT 402
Query: 354 NTEKYEIDGQVLDCSLAKPQ 373
+ ++GQ ++ LAKPQ
Sbjct: 403 ELNGFNLEGQCIEICLAKPQ 422
>gi|326507886|dbj|BAJ86686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 751
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 180/338 (53%), Gaps = 16/338 (4%)
Query: 38 DNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGIDAQKHYDGDEEMKV 97
D + EEE +EV +E+ E + E+++ + TE+ DG A K + + +
Sbjct: 152 DAEQEEEDPQEVIFEDSASVGEGQAATELKQGEDRARATEED-DGQAAAKSKNEEHRARA 210
Query: 98 AES---------DKDDEKKKHAELLALPPHGSE--VYLGGIPHDASDDDLRHFCKSIGEV 146
AE + +DE+K +++ E +++GG+ +A ++D+R +G+V
Sbjct: 211 AEKHGQAAGEVKENEDERKVMSDMAKNRQRKKELEIFVGGLDREAVEEDIRKVFSQVGDV 270
Query: 147 TEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGN 206
EVR+ K + + KG+AFV F KE ++A+ E+ + + GK+ +A++ LF+ N
Sbjct: 271 VEVRLHKDFSTSKNKGFAFVRFANKEQVARALAEMKNPMIHGKRCGVAASEDNDTLFLCN 330
Query: 207 VPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 265
+ W ++ ++K + G GV S+ LV D QN Q+RGFAF+E+ HA A + +++
Sbjct: 331 ICNTWTKEAIKKRLLDYGVEGVQSLTLVPDTQNEGQSRGFAFLEFSCHADAMLAFKRLQQ 390
Query: 266 PK--FKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITK 322
P F + V++A+P + A++ +QVK++++ LP ++R+K F +G I +
Sbjct: 391 PDALFGHPERTAKVAFAEPIKEADAEVMAQVKSVFINGLPPYWDEERVKNRFKAYGLIER 450
Query: 323 VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 360
VV+ +R+ +GFV+F+ A+ ++ T E+
Sbjct: 451 VVLARNMSSAKRNDFGFVNFSTHEEALACIEATNNTEL 488
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 80/370 (21%), Positives = 159/370 (42%), Gaps = 54/370 (14%)
Query: 14 PDAPENPTEREKPIESEERVDLDEDNDHEEEVEEEV-EYEEVEEEEEVEVEEEVEEEVEE 72
PDA E + E ++E V D D + E EV +++ + ++ +
Sbjct: 49 PDANEQAVQNEAQGNNQEEVTADTDKQAVQIQETEVNQHQGGGKADDDDDVAVKTAAAAT 108
Query: 73 EEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDAS 132
+ T+D + D+Q G EM VA +D E K+ ++ G + +
Sbjct: 109 QSATDDAQNKQDSQAETLGQGEM-VAATDNSAEDKQ-----------DQLQQGQMDAEQE 156
Query: 133 DDDLRHFC----KSIGE---VTEVRIMKGKDSGEAK----GYAFVTFRTKELASQAIEEL 181
++D + S+GE TE++ +G+D A G A + +E ++A E+
Sbjct: 157 EEDPQEVIFEDSASVGEGQAATELK--QGEDRARATEEDDGQAAAKSKNEEHRARAAEKH 214
Query: 182 NSC--ELK----GKKIKCSAAQAKHR-----LFIGNVPRNWGEDDMRKAVTKIGPGVISI 230
E+K +K+ A+ + R +F+G + R E+D+RK +++G V+ +
Sbjct: 215 GQAAGEVKENEDERKVMSDMAKNRQRKKELEIFVGGLDREAVEEDIRKVFSQVG-DVVEV 273
Query: 231 ELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
L KD + ++N+GFAF+ + N + +M NP + +A+
Sbjct: 274 RLHKD-FSTSKNKGFAFVRFANKEQVARALAEMKNPMIH------------GKRCGVAAS 320
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHG--KITKVVIPPAKPGQERSR-YGFVHFAERSS 347
L++ N+ T++ +K+ +G + + + P + +SR + F+ F+ +
Sbjct: 321 EDNDTLFLCNICNTWTKEAIKKRLLDYGVEGVQSLTLVPDTQNEGQSRGFAFLEFSCHAD 380
Query: 348 AMKALKNTEK 357
AM A K ++
Sbjct: 381 AMLAFKRLQQ 390
>gi|168042168|ref|XP_001773561.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675100|gb|EDQ61599.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 309
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 142/250 (56%), Gaps = 8/250 (3%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EVY+GG+ D +++DL+ + GEV EVR+M+ +G+ +GYAFV + + +A +A EE
Sbjct: 53 EVYVGGLDKDTTEEDLKPLFEKAGEVVEVRLMRNPQTGKNRGYAFVRYSSAAMAKRAAEE 112
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI-SIELVKDPQNA 239
L + E++G++ ++ L +GN+ ++W ++ + + + + I + L++DPQ
Sbjct: 113 LGTIEIRGRECTAKPSEENDTLHLGNINKSWKKEMVMETLKSLCIERIEELTLMEDPQVE 172
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLD-DNAPTVSWADPR-NAESSAASQVKALY 297
NRGFAFIE+ H A + +K+ P D + V+WA P + SQVK+++
Sbjct: 173 GLNRGFAFIEFSTHKDALEAFRKLQQPDAIFGADRSAKVAWAQPLYEPDEDTMSQVKSVF 232
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK---ALKN 354
V +P + ++E F +G+I ++V+ +R +GFV+F ER +A+ AL N
Sbjct: 233 VDGMPPTWEEVNVREHFGKYGEIERIVLARNMLSAKRKDFGFVNFVERDAALACIDALNN 292
Query: 355 TEKYEIDGQV 364
TE IDG +
Sbjct: 293 TEI--IDGDI 300
>gi|345326219|ref|XP_001506578.2| PREDICTED: APOBEC1 complementation factor [Ornithorhynchus
anatinus]
Length = 655
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 145/266 (54%), Gaps = 19/266 (7%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+
Sbjct: 50 AAPERGCEIFVGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQE 108
Query: 174 ASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
A AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMRKVTEGVVEVIV 168
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAAS 291
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERS 346
VK LYV+NL +++ ++ F + KPG ER + Y FVHF R
Sbjct: 229 SVKILYVRNLMLSTSEETIEREFNN-----------IKPGAVERVKKIRDYAFVHFNNRE 277
Query: 347 SAMKALKNTEKYEIDGQVLDCSLAKP 372
A+ A+K +DG ++ +LAKP
Sbjct: 278 DAVGAMKALNGKVLDGSPIEVTLAKP 303
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
P E++A + ++V LP+D+ +D L L GKI ++ + G R Y FV
Sbjct: 44 PPGWEAAAPERGCEIFVGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRG-YAFVT 102
Query: 342 FAERSSAMKALKNTEKYEI-DGQVL 365
F+ + A A+K YEI +G++L
Sbjct: 103 FSNKQEAKNAIKQLNNYEIRNGRLL 127
>gi|351705983|gb|EHB08902.1| Heterogeneous nuclear ribonucleoprotein R [Heterocephalus glaber]
Length = 670
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 139/233 (59%), Gaps = 11/233 (4%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++G IP D +D+L + G + ++R+M SG+ +GYA +TF KE A +A++
Sbjct: 226 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYALITFCGKEAAQEAVKLC 285
Query: 182 NSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 286 DSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKK 345
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVK 299
+NR F F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+V+
Sbjct: 346 KNR-FCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVR 404
Query: 300 NLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 405 NLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 449
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 128/261 (49%), Gaps = 39/261 (14%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
+A++ +F+G +PR+ ED++ K GP + + L+ D
Sbjct: 221 EAVK---------------------LVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMD 258
Query: 236 PQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN-APTVSWADPRNAESSAASQVK 294
P + QNRG+A I + A+ + + + + + + +S A+ R
Sbjct: 259 PLSG-QNRGYALITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNR----------- 306
Query: 295 ALYVKNLPKDITQDRLKELFAHHGK-ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
L+V ++PK+ T++ + E F+ + + V++ ++++R+ F+ + + SA +A +
Sbjct: 307 -LFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRFCFLEYEDHKSAAQARR 365
Query: 354 N--TEKYEIDGQVLDCSLAKP 372
+ K ++ G V+ A P
Sbjct: 366 RLMSGKVKVWGNVVTVEWADP 386
>gi|349603648|gb|AEP99431.1| Heteroproteinous nuclear ribonucleoprotein Q-like protein, partial
[Equus caballus]
Length = 367
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 129/210 (61%), Gaps = 2/210 (0%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++V
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKV 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKV 323
K L+V+NL +T++ L++ F+ GK+ +V
Sbjct: 338 KVLFVRNLANTVTEEILEKAFSQFGKLERV 367
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 262 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 319
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 320 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 375
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|71987750|ref|NP_493049.2| Protein HRP-2, isoform a [Caenorhabditis elegans]
gi|42733185|emb|CAB70238.2| Protein HRP-2, isoform a [Caenorhabditis elegans]
Length = 611
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 144/256 (56%), Gaps = 11/256 (4%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G E+Y+G IP D +D L + G++ ++R+M SG ++GYAFVT+ KE A+ A
Sbjct: 198 QGHEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAA 257
Query: 178 IEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDP 236
+ + E+ GK +K + + A RLFIGN+P+ +D++ + + GV+ + + P
Sbjct: 258 AKTYDGHEISTGKPLKVNVSIANTRLFIGNIPKTKSKDEILEELKTHAEGVVDVIVYSVP 317
Query: 237 QNAN-QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQVK 294
N +NRGF F+++ +H A ++K++ K + + V WA+ + + S+VK
Sbjct: 318 DNEKIKNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQEEPDEDTMSKVK 377
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
LY++N+ + +T+++L ELF + + +V ++ Y F+HF ER +KA++
Sbjct: 378 VLYIRNIKEAVTEEKLNELFKEYASLDRV--------KKVKDYAFIHFNERDDCLKAMEE 429
Query: 355 TEKYEIDGQVLDCSLA 370
E++G V++ SLA
Sbjct: 430 WNGKELEGTVVEASLA 445
>gi|349585036|ref|NP_001073493.2| probable RNA-binding protein 46 [Danio rerio]
Length = 523
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 148/258 (57%), Gaps = 13/258 (5%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++G IP D +D+L + G + E R+M + SGE +GYAFV + T+E A +AI+
Sbjct: 59 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMM-EFSGENRGYAFVMYTTREKAQRAIQL 117
Query: 181 LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
L++ E++ GK I + RLFIG++P++ ++++++ + K+ GV+ + + +
Sbjct: 118 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYPSAVDR 177
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYV 298
+NRGFAF+EY +H A +R+K+ F+L + V WA+P + + +V+ LYV
Sbjct: 178 MKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEETMQRVRVLYV 237
Query: 299 KNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
+NL T++ L+ F+ G + +V ++ + Y F+HF R A+ AL++
Sbjct: 238 RNLMLSTTEETLRSEFSQLKPGSVERV--------KKLTDYAFIHFYNREDALTALESMN 289
Query: 357 KYEIDGQVLDCSLAKPQA 374
IDG ++ +LAKP +
Sbjct: 290 GKVIDGSPIEVTLAKPAS 307
>gi|359489218|ref|XP_002270340.2| PREDICTED: uncharacterized protein LOC100232913 [Vitis vinifera]
gi|297734640|emb|CBI16691.3| unnamed protein product [Vitis vinifera]
Length = 812
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 136/244 (55%), Gaps = 5/244 (2%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++GG+ DA++DDLR +GEVTEVR+M + + KG+AF+ F T E A +A+ E
Sbjct: 233 EVFVGGLDKDATEDDLRKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRAVTE 292
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNA 239
L + + GK+ + +Q LF+GN+ + W ++ +++ + G V + LV+D N
Sbjct: 293 LKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNE 352
Query: 240 NQNRGFAFIEYYNHACA--EYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
NRGFAF+E+ + + A + R + + F +D A VS+AD + +QVK +
Sbjct: 353 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRTA-KVSFADSFIDPGDEIMAQVKTV 411
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
++ LP +DR++EL +G+I K+ + P +R +GFV F +A+ K+
Sbjct: 412 FIDGLPASWDEDRVRELLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSIN 471
Query: 357 KYEI 360
E+
Sbjct: 472 NAEL 475
>gi|241606359|ref|XP_002405718.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
gi|215500664|gb|EEC10158.1| G-3-P dehydrogenase, putative [Ixodes scapularis]
Length = 411
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 137/242 (56%), Gaps = 14/242 (5%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV++G +P D +D+L +++G + E+R+M +G +GYAF T+ +E A
Sbjct: 61 PQRGCEVFIGKLPRDFFEDELVPLLETVGPIYELRLMM-DFAGSNRGYAFATYTNREDAR 119
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ EL+ E++ GK+I + RLF+G +PR +D+ ++++ GV+++ L
Sbjct: 120 RAVRELDEKEIRRGKRIGVCKSTDNCRLFVGGIPRTKTREDVFSEMSRVTEGVVNVILYT 179
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL-DDNAPTVSWADPR-NAESSAASQ 292
+ +NRGFAF+EY +H A +R+KM K KL + + V WA+P + S+
Sbjct: 180 SVMDKTRNRGFAFVEYTDHKTAAVARRKMIPGKMKLWNGHDVAVDWAEPEPQVDEDTMSK 239
Query: 293 VKALYVKNLPKDITQDRLKELFAHHG--KITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
V LYV+NL T+D L+E+F+ +G K++KV ++ + F+H+ R A
Sbjct: 240 VMVLYVRNLVLSTTEDELREVFSLNGSLKVSKV--------KKIRDFAFIHYRSREEATT 291
Query: 351 AL 352
AL
Sbjct: 292 AL 293
>gi|255571057|ref|XP_002526479.1| RNA binding protein, putative [Ricinus communis]
gi|223534154|gb|EEF35870.1| RNA binding protein, putative [Ricinus communis]
Length = 784
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 144/260 (55%), Gaps = 9/260 (3%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++GG+ DA++DDLR +GEVTEVR+M + + KG+AF+ F T E A +A+ E
Sbjct: 214 EVFVGGLDKDATEDDLRKVFTRVGEVTEVRLMMNPQTKKNKGFAFLRFSTVEQAKKAVTE 273
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNA 239
L + + GK+ + +Q LF+GN+ + W ++ +++ + G V + LV+D N
Sbjct: 274 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDVTLVEDSNNE 333
Query: 240 NQNRGFAFIEYYNHACA--EYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
NRGFAF+E+ + + A + R + + F +D A VS+AD + +QVK +
Sbjct: 334 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA-KVSFADSFIDPGDEIMAQVKTV 392
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM---KALK 353
+V LP +DR++EL G+I K+ + P +R +GFV F +A+ K++
Sbjct: 393 FVDGLPASWDEDRVRELLKKFGEIEKIELARNMPSAKRKDFGFVTFDSHDAAVTCAKSIN 452
Query: 354 NTEKYEIDGQV-LDCSLAKP 372
N E E D + + L++P
Sbjct: 453 NAELGEGDNKAKVRARLSRP 472
>gi|395501464|ref|XP_003755115.1| PREDICTED: APOBEC1 complementation factor [Sarcophilus harrisii]
Length = 593
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 155/296 (52%), Gaps = 22/296 (7%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P G E+++G +P D +D+L C+ G++ E+R+M + G +GYAFVTF K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKFGKIYEMRMMMDFN-GNNRGYAFVTFSNKQE 108
Query: 174 ASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
A AI++LN+ E++ G+ + + RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCPSVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAAS 291
+ +NRGFAF+EY +H A R+K+ + +L + V WA+P + S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMGRRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERS 346
VK LYV+NL +++ +++ F KPG ER + Y FVHF R
Sbjct: 229 SVKILYVRNLMLSTSEETIEKEFDS-----------IKPGSVERVKKIRDYAFVHFNNRE 277
Query: 347 SAMKALKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQKSALNPTYPPHLGY 399
A+ A+K +DG ++ +LAKP + + + G+ + + L +P LG+
Sbjct: 278 DAVNAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGAVLQGEHPYPLGH 333
>gi|147905061|ref|NP_001086049.1| APOBEC1 complementation factor [Xenopus laevis]
gi|49522081|gb|AAH74127.1| MGC81834 protein [Xenopus laevis]
Length = 584
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 112/386 (29%), Positives = 190/386 (49%), Gaps = 44/386 (11%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G E+++G +P D +D+L C+ G++ E+R+M + G +GYAFVTF ++ A A
Sbjct: 54 RGCEIFIGKLPRDLFEDELIPLCEKTGKIYEMRMMMDFN-GNNRGYAFVTFTNRQDARDA 112
Query: 178 IEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDP 236
I++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 113 IKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREEILAEMRKVTDGVLDVIVYPSA 172
Query: 237 QNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKA 295
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S VK
Sbjct: 173 ADKAKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKI 232
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMK 350
LYV+NL ++ +++ F+ KPG ER + Y FVHF R+ A+
Sbjct: 233 LYVRNLMLTTAEETIEKEFSS-----------VKPGSVERVKKIRDYAFVHFRNRADAVD 281
Query: 351 ALKNTEKYEIDGQVLDCSLAKP---QADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYG 407
A+ IDG ++ +LAKP ++ + + G+ + +A+ Y +G+ +
Sbjct: 282 AMNVLNGKIIDGSPIEVTLAKPVDKESYVRYTRGTGGRGAAIQGEYTYTIGH-VYDPTTA 340
Query: 408 ALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGR 467
LGA P+ Y A P A +P + GYV + V+ PP R
Sbjct: 341 YLGA---------PVFY---APPAYTAAIPSIQFPPVKGYVNNRSLVR----PPSVRV-- 382
Query: 468 GGAGSSSSGGR---RSTDNGRGRSRY 490
G AG GGR T GRG + +
Sbjct: 383 GAAGVRGLGGRGYLAYTGLGRGYTGF 408
>gi|345319914|ref|XP_001518200.2| PREDICTED: probable RNA-binding protein 46, partial
[Ornithorhynchus anatinus]
Length = 547
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 141/267 (52%), Gaps = 19/267 (7%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 60 GCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEAAQLAI 118
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
LN+ E++ GK I + RLFIG +P+ ++++ + + GV+ + +
Sbjct: 119 RILNNFEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKNVTEGVVDVIVYPSAT 178
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKAL 296
+ ++NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK L
Sbjct: 179 DKSKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVL 238
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKA 351
YV+NL T++ +K F KPG ER + Y FVHF R AM A
Sbjct: 239 YVRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNRDDAMTA 287
Query: 352 LKNTEKYEIDGQVLDCSLAKPQADQKT 378
+ IDG ++ +LAKP + T
Sbjct: 288 MSVMNGKYIDGAGIEVTLAKPVNKENT 314
>gi|123884311|sp|Q08BH5.1|RBM46_DANRE RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
gi|115528134|gb|AAI24721.1| Zgc:153695 [Danio rerio]
Length = 510
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 148/258 (57%), Gaps = 13/258 (5%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++G IP D +D+L + G + E R+M + SGE +GYAFV + T+E A +AI+
Sbjct: 46 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMM-EFSGENRGYAFVMYTTREKAQRAIQL 104
Query: 181 LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
L++ E++ GK I + RLFIG++P++ ++++++ + K+ GV+ + + +
Sbjct: 105 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYPSAVDR 164
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYV 298
+NRGFAF+EY +H A +R+K+ F+L + V WA+P + + +V+ LYV
Sbjct: 165 MKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEETMQRVRVLYV 224
Query: 299 KNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
+NL T++ L+ F+ G + +V ++ + Y F+HF R A+ AL++
Sbjct: 225 RNLMLSTTEETLRSEFSQLKPGSVERV--------KKLTDYAFIHFYNREDALTALESMN 276
Query: 357 KYEIDGQVLDCSLAKPQA 374
IDG ++ +LAKP +
Sbjct: 277 GKVIDGSPIEVTLAKPAS 294
>gi|148683481|gb|EDL15428.1| mCG21951 [Mus musculus]
Length = 468
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 141/266 (53%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F+ KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFSKF-----------KPGAVERVKKLRDYAFVHFFHREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|308505824|ref|XP_003115095.1| CRE-HRP-2 protein [Caenorhabditis remanei]
gi|308259277|gb|EFP03230.1| CRE-HRP-2 protein [Caenorhabditis remanei]
Length = 645
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 142/255 (55%), Gaps = 11/255 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G E+Y+G IP D +D L G++ + R+M +G ++GYAFVT+ KE A+ A
Sbjct: 224 GHEIYVGHIPTDLFEDTLVPLFAESGKIWDFRLMMDPMTGASRGYAFVTYCEKEHATNAA 283
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
++ + E+ GK +K + + A RLF+GN+P+ +D++ + + GV + + P
Sbjct: 284 KKFDGHEISTGKPLKVNVSIANTRLFLGNIPKTKSKDEILEELKSHAEGVTDVIVYSVPD 343
Query: 238 NAN-QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQVKA 295
N +NRGF F+++ +H A ++K++ K + + V WA+ + + S+VK
Sbjct: 344 NEKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEQQEEPDEDTMSKVKV 403
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
LY++N+ + +T+++L ELF + + +V ++ Y F+HF ER MKA++
Sbjct: 404 LYIRNIKEAVTEEKLTELFKEYASLDRV--------KKVKDYAFIHFNERDDCMKAMEQW 455
Query: 356 EKYEIDGQVLDCSLA 370
E++G V++ SLA
Sbjct: 456 NGKELEGTVVEASLA 470
>gi|432926030|ref|XP_004080795.1| PREDICTED: APOBEC1 complementation factor-like [Oryzias latipes]
Length = 611
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 142/262 (54%), Gaps = 19/262 (7%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
GSE+++G +P D +D+L C+ G++ EVR+M + G +GYAFVTF K+ A A
Sbjct: 55 RGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFN-GNNRGYAFVTFSNKQEAKTA 113
Query: 178 IEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDP 236
+++LN+ E++ G+ + A+ RLF+G +P+ D++ + K+ GV+ + +
Sbjct: 114 MKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKIKKRDEILTEMKKVTDGVVDVIVYPSA 173
Query: 237 QNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKA 295
+ ++NRGFAF+EY +H A +R+K+ + +L V WA+P + + VK
Sbjct: 174 ADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGYPIAVDWAEPEVEVDDDTMATVKI 233
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMK 350
LYV+NL T++ ++ F KPG ER + Y FVHF +R A+
Sbjct: 234 LYVRNLMLQTTEETIEREFNS-----------LKPGAVERVKKIRDYAFVHFCQREDAIN 282
Query: 351 ALKNTEKYEIDGQVLDCSLAKP 372
A+ ++G ++ +LAKP
Sbjct: 283 AMNALNGKLVEGSPIEVTLAKP 304
>gi|226423939|ref|NP_001139800.1| probable RNA-binding protein 46 [Mus musculus]
gi|215275534|sp|P86049.1|RBM46_MOUSE RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
Length = 533
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 141/265 (53%), Gaps = 19/265 (7%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 181 LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYV 298
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LYV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 299 KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKALK 353
+NL T++ +K F+ KPG ER + Y FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFSKF-----------KPGAVERVKKLRDYAFVHFFHREDAVAAMS 289
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 290 VMNGKCIDGASIEVTLAKPVNKENT 314
>gi|212274617|ref|NP_001130787.1| uncharacterized protein LOC100191891 [Zea mays]
gi|194690114|gb|ACF79141.1| unknown [Zea mays]
gi|414868618|tpg|DAA47175.1| TPA: hypothetical protein ZEAMMB73_366443 [Zea mays]
Length = 605
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 148/275 (53%), Gaps = 28/275 (10%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G+EV++GG+P A++ LR S GE+ + RIMK + SG +KGY FV F ++ A+ A
Sbjct: 18 GTEVFVGGLPRSATESTLREIFSSCGEIIDARIMKDQ-SGHSKGYGFVRFAKRDYANTAK 76
Query: 179 EELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL-----V 233
+ N E++GK++ + + +F GN+ + W ++ + + K V+S++L +
Sbjct: 77 RQKNGIEVQGKRLVVELSMDQDTVFFGNLCKEWTLEEFEELIHKAFKDVVSVDLAMASNL 136
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA-PTVSWADPR-NAESSAAS 291
N NRGF F+ + +HA A + S F L D P ++WAD + + +
Sbjct: 137 GSSNKKNINRGFGFVRFSSHAAAARVIRIGSRTDFMLGDILHPAINWADKESHLDPDEMA 196
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
++K+ ++ NLP+D+ ++ L++LF G++ +V I ++ GQ FVHFA+RS A
Sbjct: 197 KMKSAFIGNLPEDVNEEYLRKLFGQFGEVVRVAI--SRKGQ--CPVAFVHFAKRSELENA 252
Query: 352 LKNTEKYEIDGQV-----------LDCSLAKPQAD 375
++ E+DG+ + S+A+P AD
Sbjct: 253 IE-----EMDGKTVRGPGRGPSFKIQVSVARPTAD 282
>gi|410915937|ref|XP_003971443.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Takifugu rubripes]
Length = 598
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 143/263 (54%), Gaps = 44/263 (16%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G+E+++G IP D +D+L + G + ++R+M SG +GYAFVTF +KE A
Sbjct: 158 PPVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCSKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK+I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLCNNHEIRPGKQIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVILYL 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVK 294
PQ+ ++NRGF F+EY +H A+QVK
Sbjct: 278 QPQDKSKNRGFCFLEYEDH----------------------------------KTAAQVK 303
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
L+V+NL +T++ L++ F+ +G + +V ++ Y F+HF ER A+KAL+
Sbjct: 304 VLFVRNLANSVTEEILEKSFSEYGNLERV--------KKLKDYAFIHFEERDGAVKALEE 355
Query: 355 TEKYEIDGQVLDCSLAKPQADQK 377
E++G+ ++ AKP DQK
Sbjct: 356 MNGKELEGEPIEIVFAKP-PDQK 377
>gi|338710583|ref|XP_003362387.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Equus
caballus]
Length = 588
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 149/287 (51%), Gaps = 44/287 (15%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVK 294
P + +NRGF F+EY +H A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDH----------------------------------KTAAQVK 303
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGM 401
+++G+ ++ AKP DQK +++A N Y + YG+
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGL 401
>gi|414868617|tpg|DAA47174.1| TPA: hypothetical protein ZEAMMB73_366443 [Zea mays]
Length = 609
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 148/275 (53%), Gaps = 28/275 (10%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G+EV++GG+P A++ LR S GE+ + RIMK + SG +KGY FV F ++ A+ A
Sbjct: 18 GTEVFVGGLPRSATESTLREIFSSCGEIIDARIMKDQ-SGHSKGYGFVRFAKRDYANTAK 76
Query: 179 EELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL-----V 233
+ N E++GK++ + + +F GN+ + W ++ + + K V+S++L +
Sbjct: 77 RQKNGIEVQGKRLVVELSMDQDTVFFGNLCKEWTLEEFEELIHKAFKDVVSVDLAMASNL 136
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA-PTVSWADPR-NAESSAAS 291
N NRGF F+ + +HA A + S F L D P ++WAD + + +
Sbjct: 137 GSSNKKNINRGFGFVRFSSHAAAARVIRIGSRTDFMLGDILHPAINWADKESHLDPDEMA 196
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
++K+ ++ NLP+D+ ++ L++LF G++ +V I ++ GQ FVHFA+RS A
Sbjct: 197 KMKSAFIGNLPEDVNEEYLRKLFGQFGEVVRVAI--SRKGQ--CPVAFVHFAKRSELENA 252
Query: 352 LKNTEKYEIDGQV-----------LDCSLAKPQAD 375
++ E+DG+ + S+A+P AD
Sbjct: 253 IE-----EMDGKTVRGPGRGPSFKIQVSVARPTAD 282
>gi|338710585|ref|XP_003362388.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Equus
caballus]
Length = 527
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 149/287 (51%), Gaps = 44/287 (15%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVK 294
P + +NRGF F+EY +H A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDH----------------------------------KTAAQVK 303
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGM 401
+++G+ ++ AKP DQK +++A N Y + YG+
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGL 401
>gi|296195353|ref|XP_002745373.1| PREDICTED: probable RNA-binding protein 46 [Callithrix jacchus]
Length = 485
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGTVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKFIDGASIEVTLAKPVNKENT 314
>gi|300794578|ref|NP_001179648.1| probable RNA-binding protein 46 [Bos taurus]
gi|296478817|tpg|DAA20932.1| TPA: RNA binding motif protein 46 [Bos taurus]
gi|440907847|gb|ELR57939.1| Putative RNA-binding protein 46 [Bos grunniens mutus]
Length = 533
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGSVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|149048270|gb|EDM00846.1| similar to hypothetical protein MGC27016 (predicted) [Rattus
norvegicus]
Length = 468
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|119625308|gb|EAX04903.1| hypothetical protein MGC27016, isoform CRA_b [Homo sapiens]
gi|193785107|dbj|BAG54260.1| unnamed protein product [Homo sapiens]
Length = 470
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|114596513|ref|XP_528865.2| PREDICTED: probable RNA-binding protein 46 isoform 2 [Pan
troglodytes]
gi|397504054|ref|XP_003822624.1| PREDICTED: probable RNA-binding protein 46 [Pan paniscus]
gi|402870690|ref|XP_003899339.1| PREDICTED: probable RNA-binding protein 46 [Papio anubis]
Length = 470
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|426246909|ref|XP_004017229.1| PREDICTED: probable RNA-binding protein 46 [Ovis aries]
Length = 533
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKRKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGTVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|355687676|gb|EHH26260.1| hypothetical protein EGK_16179 [Macaca mulatta]
gi|355749630|gb|EHH54029.1| hypothetical protein EGM_14765 [Macaca fascicularis]
Length = 533
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|168060688|ref|XP_001782326.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666185|gb|EDQ52846.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 351
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 149/267 (55%), Gaps = 14/267 (5%)
Query: 105 EKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYA 164
+++KH L EVY+GG+ D +++DL+ K GEV E+R+M+ +G+ KG+A
Sbjct: 49 DRRKHKRL--------EVYVGGLDKDTTEEDLKSLFKKAGEVIEIRLMRNPQTGKNKGFA 100
Query: 165 FVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG 224
F+ + + +A +A E+ + E++G++ ++ L +GN+ ++W ++ + + + +
Sbjct: 101 FIRYASAAMAKRATEDFETVEIRGRQCTAKPSEENDTLHLGNINKSWKKEMVLETLKSLS 160
Query: 225 PGVI-SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL-DDNAPTVSWADP 282
I + L++DPQ NRGFAFIE+ H A + +K+ P + + V+WA P
Sbjct: 161 IESIEELTLMEDPQVEGVNRGFAFIEFSTHKDALDAFRKLQQPDAIFGTERSAKVAWAQP 220
Query: 283 R-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
+ SQVK+++V +P + ++E F +G+I ++V+ +R +GFV+
Sbjct: 221 LYEPDEDTMSQVKSVFVDGMPLTWEEGNVREHFGKYGEIERIVLARNMLSAKRKDFGFVN 280
Query: 342 FAERSSAMK---ALKNTEKYEIDGQVL 365
+ ER++A+ AL NTE + D +VL
Sbjct: 281 YMERNAALTCIDALNNTEIIDGDMKVL 307
>gi|297674548|ref|XP_002815285.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Pongo abelii]
Length = 533
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|332820527|ref|XP_003310593.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Pan
troglodytes]
Length = 533
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|301606991|ref|XP_002933097.1| PREDICTED: probable RNA-binding protein 46-like [Xenopus (Silurana)
tropicalis]
Length = 533
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 139/260 (53%), Gaps = 19/260 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + KE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPLFERAGKIYEFRLMM-EFSGENRGYAFVMYTNKEEALLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I A+ RLFIG++P+ ++D+ + + K+ GV+ + + +
Sbjct: 120 MLNNYEIRQGKFIGVCASLDNCRLFIGSIPQEKRKEDILEEMKKVTEGVMDVIVCPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+ Y +H A +R+K+ F+L V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVTYESHRAAAMARRKLIPGTFQLWGRTIKVDWADPEKEVDEETMQKVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG-QERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F + KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMMSTTEETIKAEFNRY-----------KPGVVERVKKIRDYAFVHFFRRDYAIAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKP 372
IDG ++ +LAKP
Sbjct: 289 SEMNGRLIDGARIEVTLAKP 308
>gi|354474595|ref|XP_003499516.1| PREDICTED: probable RNA-binding protein 46 [Cricetulus griseus]
Length = 533
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|344239872|gb|EGV95975.1| putative RNA-binding protein 46 [Cricetulus griseus]
Length = 503
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 75 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 133
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 134 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 193
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 194 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 253
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 254 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 302
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 303 SVMNGKCIDGASIEVTLAKPVNKENT 328
>gi|208973286|ref|NP_001129189.1| probable RNA-binding protein 46 [Rattus norvegicus]
Length = 533
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|21450675|ref|NP_659416.1| probable RNA-binding protein 46 [Homo sapiens]
gi|74760436|sp|Q8TBY0.1|RBM46_HUMAN RecName: Full=Probable RNA-binding protein 46; AltName:
Full=Cancer/testis antigen 68; Short=CT68; AltName:
Full=RNA-binding motif protein 46
gi|20306894|gb|AAH28588.1| RNA binding motif protein 46 [Homo sapiens]
gi|119625307|gb|EAX04902.1| hypothetical protein MGC27016, isoform CRA_a [Homo sapiens]
gi|325463385|gb|ADZ15463.1| RNA binding motif protein 46 [synthetic construct]
Length = 533
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|395834586|ref|XP_003790279.1| PREDICTED: probable RNA-binding protein 46 [Otolemur garnettii]
Length = 533
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|57096861|ref|XP_532699.1| PREDICTED: probable RNA-binding protein 46 [Canis lupus familiaris]
Length = 533
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|126331293|ref|XP_001366441.1| PREDICTED: probable RNA-binding protein 46-like [Monodelphis
domestica]
gi|395542497|ref|XP_003773166.1| PREDICTED: probable RNA-binding protein 46 [Sarcophilus harrisii]
Length = 533
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKEST 314
>gi|410956690|ref|XP_003984972.1| PREDICTED: probable RNA-binding protein 46 [Felis catus]
Length = 533
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKEST 314
>gi|301787307|ref|XP_002929069.1| PREDICTED: probable RNA-binding protein 46-like [Ailuropoda
melanoleuca]
gi|281342850|gb|EFB18434.1| hypothetical protein PANDA_019160 [Ailuropoda melanoleuca]
Length = 533
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|297293557|ref|XP_001092238.2| PREDICTED: probable RNA-binding protein 46 [Macaca mulatta]
Length = 709
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 237 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 295
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 296 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 355
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 356 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 415
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 416 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 464
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 465 SVMNGKCIDGASIEVTLAKPVNKENT 490
>gi|344291747|ref|XP_003417592.1| PREDICTED: probable RNA-binding protein 46 [Loxodonta africana]
Length = 533
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SIMNGKCIDGASIEVTLAKPVNKENT 314
>gi|311262420|ref|XP_003129173.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Sus scrofa]
Length = 533
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|403272285|ref|XP_003928003.1| PREDICTED: probable RNA-binding protein 46 [Saimiri boliviensis
boliviensis]
Length = 533
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 140/265 (52%), Gaps = 19/265 (7%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRI 120
Query: 181 LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSAIDK 180
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYV 298
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LYV
Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240
Query: 299 KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKALK 353
+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 241 RNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAMS 289
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 290 VMNGKFIDGASIEVTLAKPVNKENT 314
>gi|327274033|ref|XP_003221783.1| PREDICTED: probable RNA-binding protein 46-like [Anolis
carolinensis]
Length = 514
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNRDDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKEST 314
>gi|124487289|ref|NP_001074543.1| APOBEC1 complementation factor [Mus musculus]
gi|341940157|sp|Q5YD48.2|A1CF_MOUSE RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
Length = 595
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+++ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|431901230|gb|ELK08296.1| Putative RNA-binding protein 46 [Pteropus alecto]
Length = 699
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 287 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 345
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 346 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 405
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 406 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 465
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 466 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 514
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 515 SVMNGKCIDGASIEVTLAKPVNKENT 540
>gi|158706381|sp|Q4R2Z0.2|RBM46_MACFA RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
Length = 485
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|335293716|ref|XP_003357034.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Sus scrofa]
Length = 485
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|432093052|gb|ELK25342.1| Putative RNA-binding protein 46 [Myotis davidii]
Length = 533
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 139/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL +D +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTAEDTIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|341894933|gb|EGT50868.1| hypothetical protein CAEBREN_24646 [Caenorhabditis brenneri]
Length = 630
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 144/256 (56%), Gaps = 11/256 (4%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G E+Y+G IP+D +D L + G++ ++R+M +G ++GYAFVT+ KE A+ A
Sbjct: 216 QGHEIYVGHIPNDIFEDTLVPLFEKSGKIWDLRLMMDPMTGASRGYAFVTYCEKEHAANA 275
Query: 178 IEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDP 236
+ + E+ GK +K + + A RLF+GN+P+ +D++ + + GV + + P
Sbjct: 276 AKTYDGHEISTGKPLKVNVSIANTRLFLGNIPKTKSKDEILEELKTHAEGVTDVIVYSVP 335
Query: 237 QNAN-QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQVK 294
N +NRGF F+++ +H A ++K++ K + + V WA+ + + S+VK
Sbjct: 336 DNDKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQEEPDEDTMSKVK 395
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
LY++N+ + +T+++L E+F + + +V ++ Y F+HF ER MKA++
Sbjct: 396 VLYIRNIKEAVTEEKLTEIFKEYASLDRV--------KKVKDYAFIHFNEREDCMKAMEQ 447
Query: 355 TEKYEIDGQVLDCSLA 370
E++G V++ SLA
Sbjct: 448 WNGKELEGTVVEASLA 463
>gi|194380344|dbj|BAG63939.1| unnamed protein product [Homo sapiens]
Length = 485
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|332217539|ref|XP_003257916.1| PREDICTED: probable RNA-binding protein 46 isoform 2 [Nomascus
leucogenys]
Length = 470
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 139/261 (53%), Gaps = 9/261 (3%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357
V+NL T++ +K F K + + ++ Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEF------NKFKLGAVERVKKLRDYAFVHFFNREDAVAAMSVMNG 293
Query: 358 YEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 294 KCIDGASIEVTLAKPVNKENT 314
>gi|58477316|gb|AAH89622.1| APOBEC1 complementation factor [Mus musculus]
Length = 384
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+++ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|332217537|ref|XP_003257915.1| PREDICTED: probable RNA-binding protein 46 isoform 1 [Nomascus
leucogenys]
Length = 533
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 140/263 (53%), Gaps = 13/263 (4%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
V+NL T++ +K F G + +V ++ Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKFKLGAVERV--------KKLRDYAFVHFFNREDAVAAMSVM 291
Query: 356 EKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 292 NGKCIDGASIEVTLAKPVNKENT 314
>gi|357518111|ref|XP_003629344.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355523366|gb|AET03820.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 989
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 145/267 (54%), Gaps = 9/267 (3%)
Query: 103 DDEKKKHAELLALPPHGS-----EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDS 157
D+E +H E A+ E+++GG+ D +++DL+ + IGEV EVR+ K +
Sbjct: 396 DEEHDEHMEFEAIAKQRRIRKEHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSST 455
Query: 158 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMR 217
+ +GYA V F KE A +A+ E+ + ++GK+ S ++ LF+GN+ W ++ ++
Sbjct: 456 SKNRGYAVVRFANKEHAKKALSEMKNPVIRGKRCGTSPSEDNDTLFLGNICNTWTKEAVK 515
Query: 218 KAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK--FKLDDNA 274
+ + G GV +I LV D Q+ +RGFAF+E+ HA A + +++ P F +
Sbjct: 516 QKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERT 575
Query: 275 PTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
V++A+P R + +QVK++++ LP +D ++E +G+I K+V+ +
Sbjct: 576 AKVAFAEPIREPDPEIMAQVKSVFINGLPLHWDEDHVREHLKSYGEIVKIVLARKMSTSK 635
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEI 360
R +GFV F+ +A+ + K E+
Sbjct: 636 RKDHGFVDFSTHEAALACVDGVNKSEL 662
>gi|81916405|sp|Q923K9.1|A1CF_RAT RecName: Full=APOBEC1 complementation factor; AltName:
Full=APOBEC1-stimulating protein
gi|15072439|gb|AAK50145.1| APOBEC-1 complementation factor long isoform [Rattus norvegicus]
Length = 594
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+++ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|19173760|ref|NP_596891.1| APOBEC1 complementation factor [Rattus norvegicus]
gi|15077247|gb|AAK83095.1|AF290984_1 APOBEC-1 complementation factor short isoform [Rattus norvegicus]
Length = 586
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+++ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|27462518|gb|AAO15465.1|AF442133_1 APOBEC-1 complementation factor 43 kDa variant [Rattus norvegicus]
Length = 383
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+++ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|194208379|ref|XP_001500866.2| PREDICTED: probable RNA-binding protein 46 [Equus caballus]
Length = 532
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ G+ I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 120 ILNNYEIRPGRFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 289 SVMNGKCIDGASIEVTLAKPVNKENT 314
>gi|344245091|gb|EGW01195.1| APOBEC1 complementation factor [Cricetulus griseus]
Length = 1001
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 147/266 (55%), Gaps = 19/266 (7%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P G E+++G +P D +D+L C+ IG++ E+R+M +G +GYAFVTF K+
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMM-DFNGNNRGYAFVTFSNKQE 108
Query: 174 ASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
A AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGVVDVIV 168
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAAS 291
+ +NRGFAF+EY +H A +R+++ + +L + V WA+P + S
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERS 346
VK LYV+NL +++ +++ F KPG ER + Y FVHF+ R
Sbjct: 229 SVKILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVERVKKIRDYAFVHFSNRE 277
Query: 347 SAMKALKNTEKYEIDGQVLDCSLAKP 372
A++A+K +DG ++ +LAKP
Sbjct: 278 DAVEAMKALNGKVLDGSPIEVTLAKP 303
>gi|224133750|ref|XP_002327671.1| predicted protein [Populus trichocarpa]
gi|222836756|gb|EEE75149.1| predicted protein [Populus trichocarpa]
Length = 284
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 137/244 (56%), Gaps = 4/244 (1%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
E+++GG+ DA+++DLR + IGEV EVR+ K + KGYAFV F +KE +A+ E
Sbjct: 22 EIFVGGLDRDATEEDLRKVFEKIGEVVEVRLHKNLSTNRNKGYAFVKFASKEHVKRALSE 81
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGP-GVISIELVKDPQNA 239
+ + ++GK+ + ++ LF+GN+ W ++ +R+ + G GV +I +V D Q+
Sbjct: 82 MKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGVEGVENITVVSDAQHE 141
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPK--FKLDDNAPTVSWADP-RNAESSAASQVKAL 296
++RGFAF+E+ HA A + +++ P F + V++A+P R + +QVK +
Sbjct: 142 GRSRGFAFLEFACHADAMLAYKRLQKPDVVFGHPERTAKVAFAEPIREPDPEIMAQVKTI 201
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
++ LP +DR++E +G+I +VV+ +R +GFV F+ A+ ++
Sbjct: 202 FLDGLPPHWDEDRVRECLKGYGEIVRVVLARNMSTAKRKDFGFVDFSTHDDAVACIEGIN 261
Query: 357 KYEI 360
E
Sbjct: 262 NREF 265
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 79/161 (49%), Gaps = 17/161 (10%)
Query: 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 259
+ +F+G + R+ E+D+RK KIG V+ + L K+ + N+N+G+AF+++ + + +
Sbjct: 21 YEIFVGGLDRDATEEDLRKVFEKIGE-VVEVRLHKN-LSTNRNKGYAFVKFASKEHVKRA 78
Query: 260 RQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 319
+M NP + + ++ + L++ N+ T++ +++ +G
Sbjct: 79 LSEMKNPVIR------------GKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGV 126
Query: 320 --ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEK 357
+ + + + RSR + F+ FA + AM A K +K
Sbjct: 127 EGVENITVVSDAQHEGRSRGFAFLEFACHADAMLAYKRLQK 167
>gi|148709767|gb|EDL41713.1| mCG1979, isoform CRA_a [Mus musculus]
Length = 369
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 37 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAK 95
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 96 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 155
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+++ + +L + V WA+P + S V
Sbjct: 156 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 215
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F KPG ER + Y FVHF+ R A
Sbjct: 216 KILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVERVKKIRDYAFVHFSNREDA 264
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 265 VEAMKALNGKVLDGSPIEVTLAKP 288
>gi|354490876|ref|XP_003507582.1| PREDICTED: APOBEC1 complementation factor-like [Cricetulus griseus]
Length = 592
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILLEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+++ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|326923245|ref|XP_003207849.1| PREDICTED: APOBEC1 complementation factor-like [Meleagris
gallopavo]
Length = 590
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 145/259 (55%), Gaps = 14/259 (5%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEARNAI 113
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIG-NVPRNWGEDDMRKAVTKIGPGVISIELVKDP 236
++LN+ E++ G+ + A+ RLF+G + P+ +++ + K+ GV+ + +
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGDPPKTKKREEILAEMKKVTDGVVDVIVYPSA 173
Query: 237 QNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKA 295
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S VK
Sbjct: 174 ADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKI 233
Query: 296 LYVKNLPKDITQDRLKELFAH--HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
LYV+NL T++ +++ F + G + +V ++ Y FVHF +R A+ A+K
Sbjct: 234 LYVRNLMLSTTEETIEKEFNNIKQGAVERV--------KKIRDYAFVHFNKREDAVDAMK 285
Query: 354 NTEKYEIDGQVLDCSLAKP 372
+DG ++ +LAKP
Sbjct: 286 ALNGKVLDGSPIEVTLAKP 304
>gi|355782924|gb|EHH64845.1| hypothetical protein EGM_18166 [Macaca fascicularis]
Length = 605
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 148/279 (53%), Gaps = 32/279 (11%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLE 108
Query: 174 ASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
A AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKM-------------SNPKFKLDDNAPTVSW 279
+ +NRGFAF+EY +H A +R+K+ + + +L + V W
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGIPAPPSLVTVTPGRIQLWGHPIAVDW 228
Query: 280 ADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR- 336
A+P + S VK LYV+NL +++ +++ F + KPG ER +
Sbjct: 229 AEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKK 277
Query: 337 ---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372
Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 278 IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 316
>gi|443720300|gb|ELU10098.1| hypothetical protein CAPTEDRAFT_167544 [Capitella teleta]
Length = 541
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 142/263 (53%), Gaps = 15/263 (5%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV++G IP D +D+L + IGE+ E+R+M SG +GY FV + ++ A
Sbjct: 54 PARGCEVFVGKIPRDCYEDELVPVFEKIGEIYELRLMM-DFSGSNRGYCFVMYTKRDDAK 112
Query: 176 QAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ ELN+ E+ KG+ + + RLF+G +P+N ++R + K+ GV+ + +
Sbjct: 113 RAVRELNNFEIRKGRFLGVCLSVDNCRLFVGGIPKNKQRHEIRTEMKKVTEGVVDVIVYP 172
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + S+V
Sbjct: 173 SATDKAKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEQEVDEDVMSKV 232
Query: 294 KALYVKNL----PKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
K LYV+NL ++ + + G + +V ++ Y FVHF ER A+
Sbjct: 233 KILYVRNLMLTTTEEFLETTFNQACGKEGAVERV--------KKLRDYAFVHFKERDDAL 284
Query: 350 KALKNTEKYEIDGQVLDCSLAKP 372
A++ I+G +++ +LAKP
Sbjct: 285 LAMEVINGQLIEGSMVEVTLAKP 307
>gi|27462520|gb|AAO15466.1|AF442134_1 APOBEC-1 complementation factor 45 kDa variant [Rattus norvegicus]
Length = 405
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 146/264 (55%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+++ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFN-----------SIKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|224067534|ref|XP_002302501.1| predicted protein [Populus trichocarpa]
gi|222844227|gb|EEE81774.1| predicted protein [Populus trichocarpa]
Length = 341
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 135/244 (55%), Gaps = 5/244 (2%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++GG+ DA++DDLR +GEVTEVR+M + + KG+AF+ F T E A +A+ E
Sbjct: 33 EVFVGGLDKDATEDDLRKIFSRVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRAVTE 92
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGP-GVISIELVKDPQNA 239
L + + GK+ + +Q LF+GN+ + W ++ +++ + G V + LV+D NA
Sbjct: 93 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVKDLTLVEDSNNA 152
Query: 240 NQNRGFAFIEYYNHACA--EYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
NRGFAF+E+ + + A + R + + F +D A VS+AD + +QVK +
Sbjct: 153 GMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPA-KVSFADSFIDPGDEIMAQVKTV 211
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
++ LP +DR++ L +G+I K+ + P R +GFV F +A+ K+
Sbjct: 212 FIDGLPASWDEDRVRVLLKKYGEIEKIELARNMPSARRKDFGFVTFDTHDAAVTCAKSIN 271
Query: 357 KYEI 360
E+
Sbjct: 272 NAEL 275
>gi|225462858|ref|XP_002270102.1| PREDICTED: uncharacterized protein LOC100266805 [Vitis vinifera]
Length = 719
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 159/312 (50%), Gaps = 27/312 (8%)
Query: 75 ETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDD 134
E E+++DG + + H D E++K E EV++GG+ D ++D
Sbjct: 100 EHEEMMDGYEDEHH------------DLVKERRKRKEF--------EVFVGGLDRDVTED 139
Query: 135 DLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194
DL HF + +G++TEVR+MK + + KG+AF+ F T E A +A+ EL + GK+ +
Sbjct: 140 DLFHFFRQVGDITEVRLMKNALTQKNKGFAFIRFATVEQARRAVNELKHPVINGKQCGVA 199
Query: 195 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI-SIELVKDPQNANQNRGFAFIEYYNH 253
+Q LF+GN+ + W + ++ + G + LV+D +N NRGFAF+++ +
Sbjct: 200 PSQDSDTLFVGNICKTWTKVAVKDKLAYYGVDKYEDLTLVEDTKNEGMNRGFAFLDFSSR 259
Query: 254 ACAEYSRQKMSNPKFKL-DDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLK 311
A A + +++ D V++AD + SQV+ +++ LP +DR++
Sbjct: 260 ADALEACKRLQKRDVVFGTDRTARVAFADTFIEPDDEIMSQVRTIFLDGLPATWDEDRVR 319
Query: 312 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE-IDGQVL---DC 367
+ G+I K+ + P +R+ +GFV F SA+ + + E +DG+ L
Sbjct: 320 DYLKKFGRIEKIELARNMPAAKRTDFGFVTFDTHDSAVACVDSINNSELVDGERLVKVRA 379
Query: 368 SLAKPQADQKTS 379
L++P+ K++
Sbjct: 380 RLSRPRQRGKSA 391
>gi|156377726|ref|XP_001630797.1| predicted protein [Nematostella vectensis]
gi|156217825|gb|EDO38734.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 151/277 (54%), Gaps = 14/277 (5%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
++ H+ G+EV++G IP D +D+L + GE+ E R+ +G KG+AF
Sbjct: 96 QRNHSYESVFQESGTEVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFAF 155
Query: 166 VTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG 224
TF + A QAI LN +++ G+++ +++ RLF+ +P+ ++++ + +K+
Sbjct: 156 CTFTKQTSAYQAITTLNDKDIRPGRRLAICKSRSNSRLFVKGIPKRKSKEEIFQEFSKVT 215
Query: 225 PGVISIELVKDPQNANQ---NRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP-TVSWA 280
+ + + + N NRGF F+EY N+ + + ++ K ++ V+WA
Sbjct: 216 TDLQDVIVYQSCDQGNHGDLNRGFVFLEYANYIAGASALHRFTDGKVRIWGKVLEAVTWA 275
Query: 281 DPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
+ R + + S+VK++YV+N+P +++ +LK +F +G+I KV ++ YGF
Sbjct: 276 EAREIPDYAVMSKVKSIYVRNVPLPMSETQLKAVFTKYGQIEKV--------RKIRDYGF 327
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
V+FA+R SA++A+ IDG L+ SLA PQ+ +
Sbjct: 328 VYFAKRESAVQAIDGINGAYIDGCKLEVSLAIPQSSR 364
>gi|260812203|ref|XP_002600810.1| hypothetical protein BRAFLDRAFT_229350 [Branchiostoma floridae]
gi|229286100|gb|EEN56822.1| hypothetical protein BRAFLDRAFT_229350 [Branchiostoma floridae]
Length = 477
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 143/261 (54%), Gaps = 13/261 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV++G +P D +D+L ++IG++ EVR+M SG +GYAFV + KE A
Sbjct: 53 PQRGCEVFVGKLPRDLYEDELVPVFETIGKIYEVRLMM-DFSGSNRGYAFVMYTNKEDAK 111
Query: 176 QAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+++LN+ E+ KG+ + + RLF+G +P+N + ++ + ++K+ GV+++ +
Sbjct: 112 RAVKQLNNYEIRKGRLLGVCPSVDNCRLFVGGIPKNKKKHEILEEMSKVTEGVVNVIVYP 171
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA-DPRNAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA + +V
Sbjct: 172 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGRIQLWGHQIAVDWAEPEPEVDEEVMRKV 231
Query: 294 KALYVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
K LYV+NL T+D +K+ F +T+V ++ Y FVH+ R A+ A
Sbjct: 232 KVLYVRNLMVTTTEDDIKQAFEVGEEETVTRV--------KKIRDYAFVHYKTREDAIAA 283
Query: 352 LKNTEKYEIDGQVLDCSLAKP 372
+ ++G L+ + AKP
Sbjct: 284 MTAMNGSTLEGAKLEVTFAKP 304
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 23/161 (14%)
Query: 195 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHA 254
A Q +F+G +PR+ ED++ IG + + L+ D + NRG+AF+ Y N
Sbjct: 52 APQRGCEVFVGKLPRDLYEDELVPVFETIG-KIYEVRLMMD--FSGSNRGYAFVMYTNKE 108
Query: 255 CAEYSRQKMSN---PKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLK 311
A+ + ++++N K +L P+V N L+V +PK+ + +
Sbjct: 109 DAKRAVKQLNNYEIRKGRLLGVCPSVD-----NCR---------LFVGGIPKNKKKHEIL 154
Query: 312 ELFAH--HGKITKVVIPPAKPGQERSRYGFVHF-AERSSAM 349
E + G + +V P A + + FV + + R++AM
Sbjct: 155 EEMSKVTEGVVNVIVYPSATDKTKNRGFAFVEYESHRAAAM 195
>gi|390358938|ref|XP_781163.2| PREDICTED: APOBEC1 complementation factor-like isoform 3
[Strongylocentrotus purpuratus]
Length = 567
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 142/263 (53%), Gaps = 13/263 (4%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P G EV++G IP D +D+L IG++ E+R+M SG +GYAFV + T+E
Sbjct: 52 AQPSRGCEVFVGKIPRDLFEDELVPVFMKIGKIYELRLMM-DFSGSNRGYAFVMYTTRED 110
Query: 174 ASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
+A+++LN+ E+ KG+ + + RLF+G +P+N ++++ + K+ V+ + +
Sbjct: 111 GKKAVKQLNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKVTEQVVDVIV 170
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAAS 291
+ +NRGFAF+EY NH A +R+K+ + +L + V WA+P ++ +
Sbjct: 171 YPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQDVDEDVMR 230
Query: 292 QVKALYVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
VK LYV+NL T++ + + F G + +V ++ + F+HF R A+
Sbjct: 231 GVKILYVRNLMLHTTEETIAKEFNAFKEGSVERV--------KKLRDFAFIHFFTREDAL 282
Query: 350 KALKNTEKYEIDGQVLDCSLAKP 372
A+ + +DG ++ LAKP
Sbjct: 283 NAMNAMDDPLLDGAKIEVVLAKP 305
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
P E + S+ ++V +P+D+ +D L +F GKI ++ + G R Y FV
Sbjct: 46 PPGWEGAQPSRGCEVFVGKIPRDLFEDELVPVFMKIGKIYELRLMMDFSGSNRG-YAFVM 104
Query: 342 FAERSSAMKALKNTEKYEI 360
+ R KA+K YEI
Sbjct: 105 YTTREDGKKAVKQLNNYEI 123
>gi|296087486|emb|CBI34075.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 159/312 (50%), Gaps = 27/312 (8%)
Query: 75 ETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDD 134
E E+++DG + + H D E++K E EV++GG+ D ++D
Sbjct: 161 EHEEMMDGYEDEHH------------DLVKERRKRKEF--------EVFVGGLDRDVTED 200
Query: 135 DLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194
DL HF + +G++TEVR+MK + + KG+AF+ F T E A +A+ EL + GK+ +
Sbjct: 201 DLFHFFRQVGDITEVRLMKNALTQKNKGFAFIRFATVEQARRAVNELKHPVINGKQCGVA 260
Query: 195 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI-SIELVKDPQNANQNRGFAFIEYYNH 253
+Q LF+GN+ + W + ++ + G + LV+D +N NRGFAF+++ +
Sbjct: 261 PSQDSDTLFVGNICKTWTKVAVKDKLAYYGVDKYEDLTLVEDTKNEGMNRGFAFLDFSSR 320
Query: 254 ACAEYSRQKMSNPKFKL-DDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLK 311
A A + +++ D V++AD + SQV+ +++ LP +DR++
Sbjct: 321 ADALEACKRLQKRDVVFGTDRTARVAFADTFIEPDDEIMSQVRTIFLDGLPATWDEDRVR 380
Query: 312 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE-IDGQVL---DC 367
+ G+I K+ + P +R+ +GFV F SA+ + + E +DG+ L
Sbjct: 381 DYLKKFGRIEKIELARNMPAAKRTDFGFVTFDTHDSAVACVDSINNSELVDGERLVKVRA 440
Query: 368 SLAKPQADQKTS 379
L++P+ K++
Sbjct: 441 RLSRPRQRGKSA 452
>gi|348582238|ref|XP_003476883.1| PREDICTED: probable RNA-binding protein 46 [Cavia porcellus]
Length = 540
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 140/266 (52%), Gaps = 19/266 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI
Sbjct: 67 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIR 125
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 126 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 185
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF++Y +H A +R+K+ F+L + V WADP + + +VK L+
Sbjct: 186 KTKNRGFAFVKYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLF 245
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 246 VRNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAM 294
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 295 SVMSGKCIDGASIEVTLAKPVNKEST 320
>gi|390358934|ref|XP_003729368.1| PREDICTED: APOBEC1 complementation factor-like isoform 1
[Strongylocentrotus purpuratus]
Length = 548
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 142/263 (53%), Gaps = 13/263 (4%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P G EV++G IP D +D+L IG++ E+R+M SG +GYAFV + T+E
Sbjct: 52 AQPSRGCEVFVGKIPRDLFEDELVPVFMKIGKIYELRLMM-DFSGSNRGYAFVMYTTRED 110
Query: 174 ASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
+A+++LN+ E+ KG+ + + RLF+G +P+N ++++ + K+ V+ + +
Sbjct: 111 GKKAVKQLNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKVTEQVVDVIV 170
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAAS 291
+ +NRGFAF+EY NH A +R+K+ + +L + V WA+P ++ +
Sbjct: 171 YPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQDVDEDVMR 230
Query: 292 QVKALYVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
VK LYV+NL T++ + + F G + +V ++ + F+HF R A+
Sbjct: 231 GVKILYVRNLMLHTTEETIAKEFNAFKEGSVERV--------KKLRDFAFIHFFTREDAL 282
Query: 350 KALKNTEKYEIDGQVLDCSLAKP 372
A+ + +DG ++ LAKP
Sbjct: 283 NAMNAMDDPLLDGAKIEVVLAKP 305
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
P E + S+ ++V +P+D+ +D L +F GKI ++ + G R Y FV
Sbjct: 46 PPGWEGAQPSRGCEVFVGKIPRDLFEDELVPVFMKIGKIYELRLMMDFSGSNRG-YAFVM 104
Query: 342 FAERSSAMKALKNTEKYEI 360
+ R KA+K YEI
Sbjct: 105 YTTREDGKKAVKQLNNYEI 123
>gi|37359248|gb|AAN77868.1| putative heterogeneous nuclear ribonucleoprotein [Vitis vinifera]
Length = 342
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 134/246 (54%), Gaps = 9/246 (3%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++GG+ DA++DDL+ +GEVTEVR+M + + KG+AF+ F T E A +A+ E
Sbjct: 32 EVFVGGLDKDATEDDLKKVFSQVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRAVTE 91
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNA 239
L + + GK+ + +Q LF+GN+ + W ++ +++ + G V + LV+D N
Sbjct: 92 LKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNE 151
Query: 240 NQNRGFAFIE--YYNHACAEYSRQKMSNPKFKLDDNAP---TVSWADPRNAESSAASQVK 294
NRGFAF+E + + A + R + F +D A T S+ DP + +QVK
Sbjct: 152 GMNRGFAFLEFSFRSDAMDAFKRLQEERCVFGVDRTAKVSFTDSFIDPGD---EIMAQVK 208
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
+++ LP +DR++EL +G+I K+ + P +R +GFV F +A+ K+
Sbjct: 209 TVFIDGLPASWDEDRVRELLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKS 268
Query: 355 TEKYEI 360
E+
Sbjct: 269 INNAEL 274
>gi|50346315|gb|AAT74916.1| APOBEC-1 stimulating protein [Mus musculus]
Length = 595
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 145/264 (54%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+++ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|390358936|ref|XP_003729369.1| PREDICTED: APOBEC1 complementation factor-like isoform 2
[Strongylocentrotus purpuratus]
Length = 487
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 142/263 (53%), Gaps = 13/263 (4%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P G EV++G IP D +D+L IG++ E+R+M SG +GYAFV + T+E
Sbjct: 52 AQPSRGCEVFVGKIPRDLFEDELVPVFMKIGKIYELRLMM-DFSGSNRGYAFVMYTTRED 110
Query: 174 ASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
+A+++LN+ E+ KG+ + + RLF+G +P+N ++++ + K+ V+ + +
Sbjct: 111 GKKAVKQLNNYEIRKGRYLGVCPSVDNCRLFVGGIPKNKKQEEILAEMAKVTEQVVDVIV 170
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAAS 291
+ +NRGFAF+EY NH A +R+K+ + +L + V WA+P ++ +
Sbjct: 171 YPSINDKAKNRGFAFVEYENHRAAAMARRKLIPGRIQLWGHQIMVDWAEPEQDVDEDVMR 230
Query: 292 QVKALYVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
VK LYV+NL T++ + + F G + +V ++ + F+HF R A+
Sbjct: 231 GVKILYVRNLMLHTTEETIAKEFNAFKEGSVERV--------KKLRDFAFIHFFTREDAL 282
Query: 350 KALKNTEKYEIDGQVLDCSLAKP 372
A+ + +DG ++ LAKP
Sbjct: 283 NAMNAMDDPLLDGAKIEVVLAKP 305
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
P E + S+ ++V +P+D+ +D L +F GKI ++ + G R Y FV
Sbjct: 46 PPGWEGAQPSRGCEVFVGKIPRDLFEDELVPVFMKIGKIYELRLMMDFSGSNRG-YAFVM 104
Query: 342 FAERSSAMKALKNTEKYEI 360
+ R KA+K YEI
Sbjct: 105 YTTREDGKKAVKQLNNYEI 123
>gi|255581424|ref|XP_002531520.1| RNA binding protein, putative [Ricinus communis]
gi|223528873|gb|EEF30874.1| RNA binding protein, putative [Ricinus communis]
Length = 841
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 140/244 (57%), Gaps = 4/244 (1%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
E+++GG+ +A+++D+R ++IGEV EVR+ + ++KGYAFV F KE A +++ E
Sbjct: 344 EIFVGGLDREATEEDVRRVFETIGEVVEVRLHRNLAMSKSKGYAFVKFANKEHAKRSLSE 403
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNA 239
+ + + GK+ + ++ LF+GN+ W ++ +R+ + G GV +I LV D Q+
Sbjct: 404 MKNPVICGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGVEGVENITLVADVQHE 463
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPK--FKLDDNAPTVSWADP-RNAESSAASQVKAL 296
++RGFAF+E+ HA A ++ +++ P F + V++A+P R + + VK +
Sbjct: 464 GRSRGFAFLEFSCHADAMHAYKRLQKPDVVFGHPERTAKVAFAEPIREPDPEVMAHVKTV 523
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
++ LP +DR++E +G+I ++V+ +R +GFV F+ +A+ ++
Sbjct: 524 FLDGLPPHWDEDRVREQLRGYGEIMRIVLARNMSTAKRKDFGFVDFSSHEAAIACIERIN 583
Query: 357 KYEI 360
E+
Sbjct: 584 NAEL 587
>gi|297824497|ref|XP_002880131.1| hypothetical protein ARALYDRAFT_483601 [Arabidopsis lyrata subsp.
lyrata]
gi|297325970|gb|EFH56390.1| hypothetical protein ARALYDRAFT_483601 [Arabidopsis lyrata subsp.
lyrata]
Length = 805
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 143/277 (51%), Gaps = 15/277 (5%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
E+++G + A+++DL+ +GEVTE+RI+K + ++KG AF+ F T E A +A++E
Sbjct: 211 EIFVGSLDKGATEEDLKKVFGHVGEVTEIRILKNPQTKKSKGSAFLRFATMEQAKRAVKE 270
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNA 239
L S + GKK +A+Q LFIGN+ + W + +R+ + G + I LV+D N
Sbjct: 271 LKSPMINGKKCGVTASQDNDTLFIGNICKTWTPEALREKLKHYGVENMDDITLVEDSNNV 330
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP-----TVSWADPRNAESSAASQVK 294
N NRG+AF+E+ + + A + +++ P T S+ DP E +QVK
Sbjct: 331 NMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKVSFTDSFLDP---EDEIMAQVK 387
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
+++ L ++R+++L +GK+ KV + P R +GFV F +A+ K
Sbjct: 388 TIFIDGLLPSWNEERVRDLLKRYGKLEKVELARNMPSARRKDFGFVTFDTHEAAVTCAKF 447
Query: 355 TEKYEI----DGQVLDCSLAKPQADQKTSGGSNSQKS 387
E+ D + L++P QK G S +S
Sbjct: 448 INNSELGEGEDKAKVRARLSRPL--QKAGKGRQSSRS 482
>gi|50346319|gb|AAT74918.1| truncated APOBEC-1 stimulating protein [Mus musculus]
Length = 384
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 145/264 (54%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+++ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|198423269|ref|XP_002131002.1| PREDICTED: similar to APOBEC1 complementation factor [Ciona
intestinalis]
Length = 708
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 111/391 (28%), Positives = 187/391 (47%), Gaps = 30/391 (7%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
+P G EV++G +P D +D+L + G + E+R+M + G +G+AFV +
Sbjct: 96 VIPGKGCEVFVGKLPRDLYEDELVPVLEKCGRIYELRLMMDFN-GNNRGFAFVKYCAASE 154
Query: 174 ASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
A A+++LN+ E+ KG+ + + RLF+G +P+ ++++ + K+ GV + +
Sbjct: 155 ARAALKDLNNFEIRKGRLLGVCKSVDNCRLFVGGIPKTKQKEEILIEMKKVTEGVCDVIV 214
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAAS 291
+ +NRGFAF+EY +H A +R+K+ + + ++ + V WA+P + +
Sbjct: 215 YPSAADKQKNRGFAFVEYQDHHTAAMARRKLMHTRPQIWGHPIAVDWAEPEVEVDDDIMA 274
Query: 292 QVKALYVKNLPKDITQDRLKELFAH---HGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
VK LYV+NL + T+++L+ F+ G I +V ++ YGFVHF R +A
Sbjct: 275 TVKILYVRNLMLNTTEEQLEAEFSALVPSGSIERV--------KKIRDYGFVHFNTRENA 326
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAY-- 406
+K LK +DG ++ +LAKP D++T + + T P G V Y
Sbjct: 327 IKCLKQLNGKILDGSPMEVTLAKP-VDRETYVRYTRAANRVVETQEPLTIPGYVATTYDP 385
Query: 407 --GALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRI------GYVLQQPGVQQHN 458
A Y AG P+ YG P G +P L R G V Q PG+
Sbjct: 386 RFDPASAAYSYAG--GPIYYG---VPYGATTIPTLASSPRFAVPPLRGGVPQVPGMVTQI 440
Query: 459 PPPQPRSGRGGAGSSSSGGRRSTDNGRGRSR 489
G GA + +G + + RGR+R
Sbjct: 441 GAAGVPLGIPGATTGIAGAQGRGISLRGRNR 471
>gi|50346317|gb|AAT74917.1| APOBEC-1 stimulating protein [Mus musculus]
Length = 587
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 145/264 (54%), Gaps = 19/264 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+++ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 280 VEAMKALNGKVLDGSPIEVTLAKP 303
>gi|449266622|gb|EMC77664.1| putative RNA-binding protein 46, partial [Columba livia]
Length = 467
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 142/261 (54%), Gaps = 9/261 (3%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI+
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIK 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ +D++ + K+ GV+ + + + +
Sbjct: 120 FLNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKDEILNEMKKVTEGVVDVIVYPNATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+++ F+L + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRRLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357
V+NL T++ +K A K V+ K ++ Y FVHF R A+ A+
Sbjct: 240 VRNLMMSTTEETIK---AEFNKFKPGVVERVKKLRD---YAFVHFFHREDAVAAMSVMNG 293
Query: 358 YEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 294 KCIDGASIEVTLAKPVNKEST 314
>gi|345326440|ref|XP_001510154.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Ornithorhynchus anatinus]
Length = 527
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 149/290 (51%), Gaps = 51/290 (17%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVK 294
P + +NRGF F+EY +H A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDH----------------------------------KTAAQVK 303
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 404
>gi|345326438|ref|XP_003431044.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q
[Ornithorhynchus anatinus]
Length = 588
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 149/290 (51%), Gaps = 51/290 (17%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVK 294
P + +NRGF F+EY +H A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDH----------------------------------KTAAQVK 303
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 404
>gi|228008398|ref|NP_001153146.1| heterogeneous nuclear ribonucleoprotein Q isoform 3 [Homo sapiens]
gi|291396566|ref|XP_002714607.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Oryctolagus cuniculus]
gi|296198706|ref|XP_002746829.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Callithrix jacchus]
gi|301775583|ref|XP_002923212.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Ailuropoda melanoleuca]
gi|332218417|ref|XP_003258352.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|348578334|ref|XP_003474938.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 5
[Cavia porcellus]
gi|397504634|ref|XP_003822889.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Pan
paniscus]
gi|402867570|ref|XP_003897916.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Papio anubis]
gi|426234736|ref|XP_004011348.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 5
[Ovis aries]
gi|21619168|gb|AAH32643.1| SYNCRIP protein [Homo sapiens]
gi|119569013|gb|EAW48628.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_f [Homo sapiens]
gi|296484070|tpg|DAA26185.1| TPA: synaptotagmin binding, cytoplasmic RNA interacting protein
isoform 2 [Bos taurus]
gi|325464513|gb|ADZ16027.1| synaptotagmin binding, cytoplasmic RNA interacting protein
[synthetic construct]
Length = 527
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 149/290 (51%), Gaps = 51/290 (17%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVK 294
P + +NRGF F+EY +H A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDH----------------------------------KTAAQVK 303
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 404
>gi|395857932|ref|XP_003801334.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Otolemur garnettii]
Length = 527
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 149/290 (51%), Gaps = 51/290 (17%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVK 294
P + +NRGF F+EY +H A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDH----------------------------------KTAAQVK 303
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 404
>gi|426364774|ref|XP_004049471.1| PREDICTED: APOBEC1 complementation factor [Gorilla gorilla gorilla]
Length = 548
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 136/245 (55%), Gaps = 19/245 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVEAK 110
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S V
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSV 230
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F + KPG ER + Y FVHF+ R A
Sbjct: 231 KILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIRDYAFVHFSNREDA 279
Query: 349 MKALK 353
++A+K
Sbjct: 280 VEAMK 284
>gi|426353903|ref|XP_004044414.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 527
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 149/290 (51%), Gaps = 51/290 (17%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVK 294
P + +NRGF F+EY +H A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDH----------------------------------KTAAQVK 303
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 404
>gi|358344177|ref|XP_003636168.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355502103|gb|AES83306.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 824
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 107/362 (29%), Positives = 182/362 (50%), Gaps = 39/362 (10%)
Query: 28 ESEERVDLDEDNDHEEEVEEE--VEYEEVEEEEE-----------------VEVEEEVEE 68
E +ER+DL EDND E E EE V+Y+E E E+E VE + EE
Sbjct: 107 ERDERLDL-EDNDPEYEPEEYGGVDYDEKEIEQEEGHEVGDEVEEEPEENVVEEGDSGEE 165
Query: 69 EVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDD------EKKKHAELLALPPHGSEV 122
EVE+ + + + + E ++A+ D+++ E++K E EV
Sbjct: 166 EVEDGHDEIEGEEDDEHADEEHDRERAEMADVDEEEHREVVKERRKRKEF--------EV 217
Query: 123 YLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN 182
++GG+ DA++DDLR +G VTEVR+M + + KG+AF+ F E A +A+ EL
Sbjct: 218 FVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAELK 277
Query: 183 SCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNANQ 241
+ + GK+ + +Q L++GN+ + W ++ +++ + G V I LV+D +
Sbjct: 278 NPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGT 337
Query: 242 NRGFAFIEYYNHACA--EYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKALYV 298
NRGFAF+E+ + + A + R + + F +D A VS+AD + SQVK +++
Sbjct: 338 NRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPA-KVSFADSFIDPGDEIMSQVKTVFI 396
Query: 299 KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY 358
LP +D ++ L +G++ K+ + P R YGFV F +A++ +
Sbjct: 397 DALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCADSITGT 456
Query: 359 EI 360
E+
Sbjct: 457 EL 458
>gi|326916229|ref|XP_003204412.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Meleagris gallopavo]
Length = 527
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 149/290 (51%), Gaps = 51/290 (17%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVK 294
P + +NRGF F+EY +H A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDH----------------------------------KTAAQVK 303
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 404
>gi|395857936|ref|XP_003801336.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Otolemur garnettii]
Length = 588
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 149/290 (51%), Gaps = 51/290 (17%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVK 294
P + +NRGF F+EY +H A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDH----------------------------------KTAAQVK 303
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 404
>gi|268569598|ref|XP_002640564.1| C. briggsae CBR-HRP-2 protein [Caenorhabditis briggsae]
Length = 626
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 149/261 (57%), Gaps = 12/261 (4%)
Query: 114 ALPPHGS-EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE 172
A P GS E+Y+G IP+D +D L G+V ++R+M +G ++GYAFVT+ KE
Sbjct: 202 ATGPTGSCEIYVGHIPNDIFEDKLLPLFAESGKVYDLRLMMDPMTGASRGYAFVTYCNKE 261
Query: 173 LASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
A+ A ++ + EL GK +K + + A RLF+GN+P+ +D++ + + GV +
Sbjct: 262 DAAAAAKKFDGHELSPGKTLKVNISIANTRLFLGNIPKTKSKDEILEELKTHAEGVTDVI 321
Query: 232 LVKDPQNAN-QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSA 289
+ P N +NRGF F+++ +H A ++K++ K + + V WA+ ++ ++
Sbjct: 322 VYSVPDNEKIRNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQDEPDADT 381
Query: 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
S+VK LY++N+ + +T+++L ELF + + +V ++ Y F+HF ER +
Sbjct: 382 MSKVKVLYIRNIKEAVTEEKLTELFKEYASLDRV--------KKVKDYAFIHFNERDDCV 433
Query: 350 KALKNTEKYEIDGQVLDCSLA 370
KA++ +++G +++ SLA
Sbjct: 434 KAMEEWNGKDLEGTIVEASLA 454
>gi|344264677|ref|XP_003404418.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Loxodonta africana]
Length = 524
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 149/290 (51%), Gaps = 51/290 (17%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 155 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 214
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 215 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 274
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVK 294
P + +NRGF F+EY +H A+QVK
Sbjct: 275 QPDDKKKNRGFCFLEYEDH----------------------------------KTAAQVK 300
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 301 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 352
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 353 MNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 401
>gi|228008295|ref|NP_001153147.1| heterogeneous nuclear ribonucleoprotein Q isoform 4 [Homo sapiens]
gi|297678606|ref|XP_002817155.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Pongo abelii]
gi|301775587|ref|XP_002923214.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 4
[Ailuropoda melanoleuca]
gi|332218421|ref|XP_003258354.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|332824482|ref|XP_518621.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Pan
troglodytes]
gi|348578332|ref|XP_003474937.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 4
[Cavia porcellus]
gi|426234738|ref|XP_004011349.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 6
[Ovis aries]
gi|296484069|tpg|DAA26184.1| TPA: synaptotagmin binding, cytoplasmic RNA interacting protein
isoform 1 [Bos taurus]
Length = 588
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 149/290 (51%), Gaps = 51/290 (17%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVK 294
P + +NRGF F+EY +H A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDH----------------------------------KTAAQVK 303
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 404
>gi|344264675|ref|XP_003404417.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Loxodonta africana]
Length = 585
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 149/290 (51%), Gaps = 51/290 (17%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 155 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 214
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 215 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 274
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVK 294
P + +NRGF F+EY +H A+QVK
Sbjct: 275 QPDDKKKNRGFCFLEYEDH----------------------------------KTAAQVK 300
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 301 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 352
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 353 MNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 401
>gi|334324402|ref|XP_003340516.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Monodelphis
domestica]
Length = 588
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 149/290 (51%), Gaps = 51/290 (17%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVK 294
P + +NRGF F+EY +H A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDH----------------------------------KTAAQVK 303
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 404
>gi|339253564|ref|XP_003372005.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316967645|gb|EFV52050.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 2180
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 147/261 (56%), Gaps = 18/261 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
E+Y+G IP +D L + G++ ++R+M SG KGYAFVT+ K A++A +
Sbjct: 214 CEIYIGKIPKGIFEDTLIPLFEQCGKIYDIRVMMDPLSGTNKGYAFVTYCDKSSATEAAK 273
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV----- 233
+ E+K GK+++ + + A RLF+GN+P++ G++D+ + +K+ GV +I V
Sbjct: 274 KFEGYEIKNGKRLRVNVSVANTRLFVGNIPKSKGKEDIMEEFSKVS-GVQNITDVIMYSN 332
Query: 234 -KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAAS 291
DP N +NRGF F+E+ +H A +++++ + +F+ V WA+ + + + S
Sbjct: 333 PNDPVN-KKNRGFCFLEFADHKSASQAKRRLGSSRFRPWMMELVVEWAETQDDVDKETMS 391
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+VK LY++ L ++++ L+ F+ +G + +V + Y FVHFAER A KA
Sbjct: 392 KVKILYLRPLKDSVSEEELRVRFSQYGTVERV--------KRIKDYAFVHFAEREQAEKA 443
Query: 352 LKNTEKYEIDGQVLDCSLAKP 372
++ + E DG + S AKP
Sbjct: 444 IEAMKGQEFDGVPCEVSFAKP 464
>gi|224136394|ref|XP_002326849.1| predicted protein [Populus trichocarpa]
gi|222835164|gb|EEE73599.1| predicted protein [Populus trichocarpa]
Length = 343
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 139/260 (53%), Gaps = 9/260 (3%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
E+++GG+ DA++DDLR +GEVTE R+M + + KG+AF+ F T E A +A+ E
Sbjct: 33 EIFVGGLDKDATEDDLRKVFSRVGEVTEARLMMNPQTKKNKGFAFLRFATVEQAKRAVTE 92
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGP-GVISIELVKDPQNA 239
L + + GK+ + +Q LF+GN+ + W ++ +++ + G V + LV+D N
Sbjct: 93 LKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVENVEDLTLVEDSNNL 152
Query: 240 NQNRGFAFIEYYNH--ACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS-AASQVKAL 296
NRGFAF+E+ + A + R + + F +D A VS+AD +QVK L
Sbjct: 153 GMNRGFAFLEFSSRSDAMNAFKRLQKRDVLFGVDRPAK-VSFADSFIGPGDEIMAQVKTL 211
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM---KALK 353
++ LP +DR + L +G I K+ + P R +GFV F +A+ K++
Sbjct: 212 FIDGLPASWDEDRFRVLLKKYGNIEKIELARNMPSARRKDFGFVTFDTHDAAVACAKSIN 271
Query: 354 NTEKYEIDGQV-LDCSLAKP 372
N E E D +V + L++P
Sbjct: 272 NVELGEGDNKVKVRARLSRP 291
>gi|358342035|dbj|GAA49590.1| APOBEC1 complementation factor [Clonorchis sinensis]
Length = 1032
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 135/259 (52%), Gaps = 6/259 (2%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +++L + IG + R+M + +G +GY F + +E
Sbjct: 98 PPRGCEVFIGKIPRDCFEEELIPVFEQIGPIYMFRLMM-EFNGTNRGYGFCVYTNREDTK 156
Query: 176 QAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ L++ E+ KGK I + RLF+G +P+N +++ + ++ GV +
Sbjct: 157 KAVQALDNYEIRKGKTIGVCFSVDNCRLFVGGIPKNKTREEIMAEMKRVTEGVKDVISYP 216
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ ++NRGFAF+EY +H A +R+K+ K +L + V WA+P R S+V
Sbjct: 217 SVTDKSKNRGFAFVEYESHKAAAMARRKLMPGKIQLWNQQIAVDWAEPEREVNEDIMSKV 276
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K LYV+NL T+D L+E F I K + S Y F+HF ER A + L+
Sbjct: 277 KILYVRNLMLSTTEDGLREHFVCAAGGDPNCIERVK---KISDYAFIHFKEREQAARCLE 333
Query: 354 NTEKYEIDGQVLDCSLAKP 372
IDG ++ + AKP
Sbjct: 334 ALNDTLIDGSKIEVTWAKP 352
>gi|30689808|ref|NP_850422.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|20147226|gb|AAM10328.1| At2g44720/F16B22.21 [Arabidopsis thaliana]
gi|23308467|gb|AAN18203.1| At2g44720/F16B22.21 [Arabidopsis thaliana]
gi|330255364|gb|AEC10458.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 809
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 143/274 (52%), Gaps = 9/274 (3%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
E+++G + AS++DL+ +GEVTEVRI+K + ++KG AF+ F T E A +A++E
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNA 239
L S + GKK +A+Q LF+GN+ + W + +R+ + G + I LV+D N
Sbjct: 275 LKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNV 334
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT-VSWADP-RNAESSAASQVKALY 297
N NRG+AF+E+ + + A + +++ P VS+ D + E +QVK ++
Sbjct: 335 NMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKVSFTDSFLDLEDEIMAQVKTIF 394
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357
+ L ++R+++L +GK+ KV + P R +GFV F +A+ K
Sbjct: 395 IDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCAKFINN 454
Query: 358 YEI----DGQVLDCSLAKPQADQKTSGGSNSQKS 387
E+ D + L++P QK G S +S
Sbjct: 455 SELGEGEDKAKVRARLSRPL--QKAGKGRQSSRS 486
>gi|322780793|gb|EFZ10022.1| hypothetical protein SINV_02126 [Solenopsis invicta]
Length = 381
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 136/260 (52%), Gaps = 13/260 (5%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G+E++LG +P D +D+L + +G + E+R+M SG +GYAF + +A +A
Sbjct: 43 GAEIFLGRLPRDCYEDELMPLLEQVGRLLELRLMLDF-SGSTRGYAFALYEDPRIAREAC 101
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
E LN E++ G +I + RLF G VP+N + + + +TKI G++ I + + Q
Sbjct: 102 ERLNGHEIRPGHRIGVVKSMDNCRLFFGGVPKNKTKLEFLEELTKILDGIVDIYVYPNAQ 161
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR---NAESSAASQVK 294
N + NRGF F+E+ +H A +R+K+ K L D+ V WADP + V
Sbjct: 162 NRSLNRGFIFVEFRDHRAAAMARRKLIPGKVMLWDHEIAVDWADPEPGDPVDEDIMETVT 221
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
AL+V+NL D+ Q ++KE+ H + P ++ + + F+H+ R +A +
Sbjct: 222 ALFVRNLSIDMPQQKVKEIIYRHTNV------PILKLKKINHFAFIHYESREAAQTVMDI 275
Query: 355 TEKYE--IDGQVLDCSLAKP 372
+K + ++ Q + AKP
Sbjct: 276 MQKPDSIVEQQGWEVRWAKP 295
>gi|110740397|dbj|BAF02093.1| hypothetical protein [Arabidopsis thaliana]
Length = 809
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 143/274 (52%), Gaps = 9/274 (3%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
E+++G + AS++DL+ +GEVTEVRI+K + ++KG AF+ F T E A +A++E
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNA 239
L S + GKK +A+Q LF+GN+ + W + +R+ + G + I LV+D N
Sbjct: 275 LKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNV 334
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT-VSWADP-RNAESSAASQVKALY 297
N NRG+AF+E+ + + A + +++ P VS+ D + E +QVK ++
Sbjct: 335 NMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKVSFTDSFLDLEDEIMAQVKTIF 394
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357
+ L ++R+++L +GK+ KV + P R +GFV F +A+ K
Sbjct: 395 IDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCAKFINN 454
Query: 358 YEI----DGQVLDCSLAKPQADQKTSGGSNSQKS 387
E+ D + L++P QK G S +S
Sbjct: 455 SELGEGEDKAKVRARLSRPL--QKAGKGRQSSRS 486
>gi|348518317|ref|XP_003446678.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Oreochromis niloticus]
Length = 594
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 139/263 (52%), Gaps = 44/263 (16%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G+E+++G IP D +D+L + G + ++R+M S +GYAF+TF +KE A
Sbjct: 158 PPVGTEIFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSSLNRGYAFITFCSKEGAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLSDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVK 294
P + +NRGF F+EY +H A+QVK
Sbjct: 278 QPDDKKKNRGFCFLEYEDH----------------------------------KTAAQVK 303
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KAL+
Sbjct: 304 VLFVRNLANGVTEELLEKSFSEFGKLERV--------KKLKDYAFIHFEERDGAVKALEE 355
Query: 355 TEKYEIDGQVLDCSLAKPQADQK 377
E++G+ ++ AKP DQK
Sbjct: 356 MNGKELEGEPIEIVFAKP-PDQK 377
>gi|351713895|gb|EHB16814.1| Putative RNA-binding protein 46 [Heterocephalus glaber]
Length = 528
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 141/267 (52%), Gaps = 19/267 (7%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + KE A AI
Sbjct: 60 GCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTMKEEAQLAI 118
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + +
Sbjct: 119 RILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSAT 178
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKAL 296
+ +NRGFAF++Y +H +R+K+ F+L + V WADP + + +VK L
Sbjct: 179 DKTKNRGFAFVKYESHREPAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVL 238
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKA 351
+V+NL T++ +K G+ K KPG ER + Y FVHF R A+ A
Sbjct: 239 FVRNLMISTTEETIK------GEFNKF-----KPGAVERVKKLRDYAFVHFFNREDAVAA 287
Query: 352 LKNTEKYEIDGQVLDCSLAKPQADQKT 378
+ IDG ++ +LAKP + T
Sbjct: 288 MSVMSGKCIDGASIEVTLAKPVNKEST 314
>gi|15809588|gb|AAK59704.1| hnRNP Q2 [Homo sapiens]
Length = 588
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 148/290 (51%), Gaps = 51/290 (17%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVK 294
P + +NR F F+EY +H A+QVK
Sbjct: 278 QPDDKKKNRSFCFLEYEDH----------------------------------KTAAQVK 303
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 404
>gi|449500421|ref|XP_004174936.1| PREDICTED: probable RNA-binding protein 46 [Taeniopygia guttata]
Length = 757
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 141/255 (55%), Gaps = 9/255 (3%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L G++ E+R+M + SGE +GYAFV + TKE A AI+
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFGRAGKIYELRLMM-EFSGENRGYAFVMYTTKEEAQLAIK 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P++ ++++ + K+ GV+ + + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKDKKKEEILNEMKKVTEGVVDVIVYPNATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+++ F+ + V WADP + + +VK LY
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRRLIPGTFQPWGHTIQVDWADPEKIVDEETMQRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357
V+NL T+D++K A K V+ K ++ Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEDKIK---AEFNKFKPGVVERVKKLRD---YAFVHFFHREDAVAAMSVMNG 293
Query: 358 YEIDGQVLDCSLAKP 372
IDG ++ +LAKP
Sbjct: 294 KCIDGASIEVTLAKP 308
>gi|119569012|gb|EAW48627.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_e [Homo sapiens]
Length = 588
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 148/290 (51%), Gaps = 51/290 (17%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVK 294
P + +NRGF F+EY +H A+Q +
Sbjct: 278 QPDDKKKNRGFCFLEYEDH----------------------------------KTAAQAR 303
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 304 LLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEE 355
Query: 355 TEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 356 MNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 404
>gi|225439260|ref|XP_002263631.1| PREDICTED: uncharacterized protein LOC100254786 [Vitis vinifera]
Length = 770
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 183/365 (50%), Gaps = 37/365 (10%)
Query: 15 DAPENPTEREKPIESEERVDLDEDNDHEEEVEEEVEYEEVEEEEEVE-VEEEVEEEVEEE 73
D ENP I + E V++D D + E E E + E +EEVE + +EV E
Sbjct: 255 DTIENPR-----ISAMEDVNVDSIKDQKGESENENMNPQGEMKEEVENCDGGGTKEVAEV 309
Query: 74 EETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASD 133
E++ V+ EEM+ E K ++K +E+++GG+ A +
Sbjct: 310 EDSMAVLS-----------EEMEALERQK---RRK-----------TEIFIGGLDKSARE 344
Query: 134 DDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC 193
+D+R + +GEV EVR+M +G+ KGYAF+ F A +A+ + E+ GK+
Sbjct: 345 EDIRKVFEEVGEVLEVRLMMNSKTGKNKGYAFLRFALASDAKRALAKYPKIEICGKQCGT 404
Query: 194 SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI-SIELVKDPQNANQNRGFAFIEYYN 252
+ + +F+GN+ +NW +D+ K + +IG I + ++ DP N +NRGFAF+E
Sbjct: 405 APVEGNDTIFLGNIDKNWKNEDVVKLLQEIGIDKIDKVTVMVDPSNIERNRGFAFLELET 464
Query: 253 HACAEYSRQKMSNPKFKLDDNAPTVSWADPRN-AESSAASQVKALYVKNLPKDITQDRLK 311
+ A+ + +K+ V+WA+P N + +VK +Y + +P +++++
Sbjct: 465 NKDAQLAYKKLQKKDVFGKHQNIKVAWAEPLNEPDEDEMLKVKTVYAEYIPSSWEEEKVR 524
Query: 312 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK---YEIDGQV-LDC 367
+ F G+I VV+ +R + FV + R +A++ +++ + ++ + +V +
Sbjct: 525 DCFKKFGEIESVVLARNLRSSKRKDFAFVKYTTREAALECIESFSREPLHDAECKVKVKV 584
Query: 368 SLAKP 372
SLAKP
Sbjct: 585 SLAKP 589
>gi|118404976|ref|NP_001072501.1| probable RNA-binding protein 46 [Xenopus (Silurana) tropicalis]
gi|123905873|sp|Q0P4R6.1|RBM46_XENTR RecName: Full=Probable RNA-binding protein 46; AltName:
Full=RNA-binding motif protein 46
gi|112419351|gb|AAI21935.1| RNA-binding protein 46 [Xenopus (Silurana) tropicalis]
Length = 534
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 137/260 (52%), Gaps = 19/260 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D L G++ E R+M + SGE +GYAFV + KE A AI
Sbjct: 61 CEVFVGKIPRDMYEDKLVPLFARAGKIYEFRLMM-EFSGENRGYAFVMYTNKEEALLAIR 119
Query: 180 ELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E+ +GK I + RLFIG++P+ ++++ + + K+ GV+ + + +
Sbjct: 120 MLNNYEICQGKFIGVCVSLDNCRLFIGSIPQEKRKEEILEEMKKVTEGVMDVIVYPSATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+ Y +H A +R+K+ F+L + V+WA P + + +VK LY
Sbjct: 180 KTKNRGFAFVMYESHRAAAMARRKLIPGPFQLWGHTIKVAWASPEKEVDEETMQKVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG-QERSR----YGFVHFAERSSAMKAL 352
V+NL T++ +K F + KPG ER + Y FVHF R A+ A+
Sbjct: 240 VRNLMMSTTEETIKAEFNRY-----------KPGVVERVKKIRDYAFVHFFRRDYAIAAM 288
Query: 353 KNTEKYEIDGQVLDCSLAKP 372
IDG ++ +LAKP
Sbjct: 289 SVMNGRLIDGARIEVTLAKP 308
>gi|357161949|ref|XP_003579258.1| PREDICTED: uncharacterized protein LOC100834061 [Brachypodium
distachyon]
Length = 668
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 138/255 (54%), Gaps = 18/255 (7%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G+EV++GG+P A++ LR GE+ ++RIMK ++ G +KG+ FV F +E A A
Sbjct: 69 GTEVFVGGLPRSATEGTLREVFSPCGEIVDLRIMKDQN-GVSKGFGFVRFAERECAYTAK 127
Query: 179 EELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK---- 234
+ N EL+GK++ + + LF GN+ + W ++ + + K VIS++L
Sbjct: 128 RQKNGIELQGKRLAVDLSLDQDTLFFGNLCKEWSVEEFEELIHKTFKDVISVDLATASNL 187
Query: 235 DPQNANQ--NRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNA-PTVSWAD-PRNAESSAA 290
D + + NRGFAF+ + +H A + S F L P ++WA+ N ++
Sbjct: 188 DSSTSKRRLNRGFAFVRFSSHGAAARVLRIGSRTDFLLGGVLHPAINWAERESNVDAGEM 247
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
+++K +V NLP ++ +D LK+LF G++ +V + ++ G+ GF+HF RS
Sbjct: 248 AKIKTAFVGNLPANVNEDYLKKLFGRFGEVVRVAV--SRKGE--YPVGFIHFGSRSELDN 303
Query: 351 ALKNTEKYEIDGQVL 365
A+K E+DG+ +
Sbjct: 304 AIK-----EMDGKTV 313
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 289 AASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346
AA +VK ++V LP+ T+ L+E+F+ G+I + I + G + +GFV FAER
Sbjct: 63 AAGRVKGTEVFVGGLPRSATEGTLREVFSPCGEIVDLRIMKDQNGVSKG-FGFVRFAERE 121
Query: 347 SAMKALKNTEKYEIDGQVLDCSLAKPQ 373
A A + E+ G+ L L+ Q
Sbjct: 122 CAYTAKRQKNGIELQGKRLAVDLSLDQ 148
>gi|307103016|gb|EFN51281.1| hypothetical protein CHLNCDRAFT_141215 [Chlorella variabilis]
Length = 365
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 135/276 (48%), Gaps = 55/276 (19%)
Query: 113 LALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDS-GEAKGYAFVTFRTK 171
L+LPPHG+EV++GG+P ++ LR F G+V +++K ++ + +GY F+ F TK
Sbjct: 13 LSLPPHGTEVFIGGLPRTITEQQLRDFASEAGDVHSAKLIKDPNNPSQNRGYGFIKFYTK 72
Query: 172 ELASQAIEELNSCEL---KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
E A A++ L+S EL +++ +QAKH+LFIG +P ++++ + I
Sbjct: 73 EAAISAMDRLHSKELPDFPSTRVRIQPSQAKHKLFIGGIPHELSREELKDMLDPI----- 127
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE-- 286
+ + + PTV +A+P +
Sbjct: 128 -----------------------------VKGEAGGLAGGGIGEKQPTVDYAEPSQRDGG 158
Query: 287 ---------------SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 331
VK ++V NLP T+DRL+++F +G++ + IP + G
Sbjct: 159 GGGGGGGGGGGGGGGGGGGGGVKNVFVGNLPPGATEDRLRDIFNKYGEVERTHIPRPRDG 218
Query: 332 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367
S+YGFVHF ER++AM+A+++ EK E+DG +L+
Sbjct: 219 DTHSKYGFVHFRERAAAMRAVEDVEKPELDGGLLNV 254
>gi|321475098|gb|EFX86062.1| hypothetical protein DAPPUDRAFT_45498 [Daphnia pulex]
Length = 269
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 137/255 (53%), Gaps = 15/255 (5%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEA-KGYAFVTFRTKELA 174
P G EV++G IP D +++L +++G V E+R+M D+ E +G+AFVTF T A
Sbjct: 23 PSKGGEVFVGKIPRDLMENELLPVFQTVGPVYEIRLMM--DTNETNRGFAFVTFATPADA 80
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
+AI++LN E++ G+ I + RLFIG +P++ E+++ K +++I GV+ + L
Sbjct: 81 GKAIQKLNRYEIRPGRFIGVIRSMDNCRLFIGGIPKDKSEEEIHKEMSRITEGVVRVILY 140
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA-DPRNAESSAASQ 292
+ +NRGFAFIEY +H A +R+K + L V WA E S+
Sbjct: 141 SSVADKKKNRGFAFIEYESHRAAALARRKCLPDRLLLWGKNVAVDWAEPEPVVEEEILSK 200
Query: 293 VKALYVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
V+ LYV+NL + L+ELF A +G + KV I + + F+HF RS A +
Sbjct: 201 VRVLYVRNLLITTKEKELEELFDTAGNGGVEKVKI--------LNDFAFIHFGSRSQAQQ 252
Query: 351 ALKNTEKYEIDGQVL 365
A+ + + ++
Sbjct: 253 AMDALQGIRVSCMLI 267
>gi|326918248|ref|XP_003205402.1| PREDICTED: probable RNA-binding protein 46-like, partial [Meleagris
gallopavo]
Length = 467
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 144/261 (55%), Gaps = 9/261 (3%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP + +D+L + G++ E+R+M + SGE +G+AFV + TKE A AI+
Sbjct: 61 CEVFVGKIPRNIYEDELVPLFERAGKIYELRLMM-EFSGENRGFAFVMYTTKEDAQLAIK 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ G+ I + RLFIG +PR ++++ K + +I GV+ + + D +
Sbjct: 120 ILNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRITEGVVDVIVCPDATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+++ F+L A V WA P + ++ +VK LY
Sbjct: 180 RTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKEVDAETMRRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357
V+NL T+D +K A K V+ K ++ Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEDTIK---AEFNKFKPRVVERVKKLRD---YAFVHFYNREDAVAAMSVMNG 293
Query: 358 YEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 294 KCIDGASIEVTLAKPVNKEST 314
>gi|363733071|ref|XP_420372.3| PREDICTED: probable RNA-binding protein 46 [Gallus gallus]
Length = 475
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 144/261 (55%), Gaps = 9/261 (3%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP + +D+L + G++ E+R+M + SGE +G+AFV + TKE A AI+
Sbjct: 61 CEVFVGKIPRNIYEDELVPLFERAGKIYELRLMM-EFSGENRGFAFVMYTTKEDAQLAIK 119
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ G+ I + RLFIG +PR ++++ K + +I GV+ + + D +
Sbjct: 120 ILNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRITEGVVDVIVCPDATD 179
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGFAF+EY +H A +R+++ F+L A V WA P + ++ +VK LY
Sbjct: 180 RTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKEVDAETMRRVKVLY 239
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357
V+NL T+D +K A K V+ K ++ Y FVHF R A+ A+
Sbjct: 240 VRNLMISTTEDTIK---AEFNKFKPRVVERVKKLRD---YAFVHFYNREDAVAAMSIMNG 293
Query: 358 YEIDGQVLDCSLAKPQADQKT 378
IDG ++ +LAKP + T
Sbjct: 294 KCIDGASIEVTLAKPVNKEST 314
>gi|402595099|gb|EJW89025.1| heterogeneous nuclear ribonucleoprotein Q [Wuchereria bancrofti]
Length = 688
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 166/321 (51%), Gaps = 22/321 (6%)
Query: 117 PHGS--EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
P GS E+Y+G IP + +D L + +G++ ++R+M +G +GYAF+T+ K A
Sbjct: 287 PQGSGHEIYIGKIPKEVYEDTLITLFEDMGKIWDLRLMMDPLTGRNRGYAFLTYCDKTAA 346
Query: 175 SQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
+A ++ + E+ GK +K + + A RLFIGN+P++ ++++ + GV +
Sbjct: 347 YEAAKKFDGYEIMPGKNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIY 406
Query: 234 KDPQ--NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAA 290
P + +NRGF F+++ +H A +++K+ K + ++ V WA+ + +
Sbjct: 407 SSPDAGESRKNRGFCFLDFCDHKTASDAKRKIHAGKLRPWNSDLVVDWAEQQEEPDEETM 466
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
++VK LYV+NL + +T+++LKE+F+ +G++ + ++ Y F+HF ER A+K
Sbjct: 467 AKVKVLYVRNLKEAVTEEQLKEMFSAYGEVDR--------AKKIRDYAFIHFMEREPAIK 518
Query: 351 ALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALG 410
A++ ++ +++ + G + + G G GG
Sbjct: 519 AME-----ALNEKMMRGRGRGFGGLRGAFGDFSFGRGIRGGRGTAGFGRGTFGGPTDFSY 573
Query: 411 AGYVP-AGFAQPMVYGRGAAP 430
+GY P AG+ + +YG GA P
Sbjct: 574 SGYDPYAGYEE--LYGYGAPP 592
>gi|414586039|tpg|DAA36610.1| TPA: hypothetical protein ZEAMMB73_089352 [Zea mays]
gi|414586040|tpg|DAA36611.1| TPA: RNA recognition water-stress protein1, mRNA isoform 2 [Zea
mays]
gi|414586041|tpg|DAA36612.1| TPA: hypothetical protein ZEAMMB73_089352 [Zea mays]
Length = 794
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 169/336 (50%), Gaps = 27/336 (8%)
Query: 34 DLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDG-----IDAQKH 88
DL++ + E+ +EEVEY E + VEVE ++ +E E +E D V+G D H
Sbjct: 138 DLEQYEEQYEDGDEEVEYTE----DVVEVETDMVDE--ELDEGGDDVEGEGYENADEDHH 191
Query: 89 YDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTE 148
DGD+E ++ E +K E E+++GG+ DA+++DL +GE+TE
Sbjct: 192 VDGDDE---EHNEMVKEHRKRKEF--------EIFVGGLDKDATENDLMKVFGEVGEITE 240
Query: 149 VRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVP 208
VR+M + + KG+AF+ + T E A +A+ EL + ++GK+ + + LF+GN+
Sbjct: 241 VRLMMNPVTKKNKGFAFLRYATVEQARRAVSELKNPLVRGKQCGVAPSHDNDTLFVGNIC 300
Query: 209 RNWGEDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNH--ACAEYSRQKMSN 265
+ W ++ ++ + G + L +D N NRG+A +E+ A + + +
Sbjct: 301 KTWTKEHLKDKLKSYGVESFDDLLLAEDTNNPGMNRGYALLEFSTRPEAMDAFRTLQKRD 360
Query: 266 PKFKLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVV 324
F +D +A VS+AD + +QV+ +++ LP +DR+K+ +G I KV
Sbjct: 361 VVFGVDRSA-KVSFADSYPQVDDEIMAQVRTVFLDGLPPSWDEDRVKKYLKKYGAIEKVE 419
Query: 325 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 360
+ P +R +GFV F +A+ + EI
Sbjct: 420 LARNMPAAKRKDFGFVTFDTHDNAVACTEGMSNSEI 455
>gi|358336055|dbj|GAA54619.1| APOBEC1 complementation factor [Clonorchis sinensis]
Length = 292
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 7/243 (2%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L +++G + R+M SG +GY F + +E
Sbjct: 38 PPRGCEVFIGKIPRDCFEDELVPIFETVGRIYMFRLMMDF-SGCNRGYGFCIYTNREDTR 96
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ EL+S E++ GK + + RLF+G +P+N +D++ + K+ GV + +
Sbjct: 97 RAVAELDSYEIRRGKMLGVCLSVDNCRLFVGGIPKNKTKDEIMAEMLKVTDGVKDVIVYP 156
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ +NRGFAF+EY NH A +R+K+ + L + V WA+P R + S+V
Sbjct: 157 SVADKTKNRGFAFVEYENHKAAAMARRKLIPGRIHLWGHQIAVDWAEPEREVDEDIMSKV 216
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
+ LYV+NL T++ L++ H + V + + R Y FVHF +R A AL+
Sbjct: 217 RILYVRNLMLHTTEEALRD---HCNRAIGAVDAVERVKKIRD-YAFVHFRDRLQATAALR 272
Query: 354 NTE 356
+
Sbjct: 273 QLD 275
>gi|343172766|gb|AEL99086.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 142/248 (57%), Gaps = 5/248 (2%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
E+++GG+ + ++DL+ + +GEV EVR++K + + +G FV F TK+ A +A+ E
Sbjct: 153 EIFIGGLDCEVVEEDLKMAFEKVGEVVEVRLLKDSCTNKNRGCGFVRFATKDQAKKALSE 212
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNA 239
+ + + GK+ +A++ LFIGN+ W ++ + K + + GV +I LV+DP++
Sbjct: 213 MKNPVISGKRCGTAASEDNDTLFIGNICNTWTKEAINKKLKEYNLEGVENITLVQDPRHE 272
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPK--FKLDDNAPTVSWADP-RNAESSAASQVKAL 296
+RGF FI++ H A ++ +++ P F + V++++P + + ++VK++
Sbjct: 273 GLSRGFCFIQFACHDDAMFAFKRLQKPDVIFGHAERTVKVAFSEPLQEPDPEIMAKVKSV 332
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
++ LP +DR+++ F +G+I +V + P +R +GFV F +A+ +++
Sbjct: 333 FIDGLPPYWDEDRVRKHFQGYGEIKRVTLARNMPAAKRKDFGFVDFMTHEAAIACIEDVN 392
Query: 357 KYE-IDGQ 363
K + +DG
Sbjct: 393 KKDLVDGN 400
>gi|380014848|ref|XP_003691428.1| PREDICTED: APOBEC1 complementation factor-like [Apis florea]
Length = 442
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 129/238 (54%), Gaps = 11/238 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G+E++LG +P D +D+L ++IG + E+R+M SG +GYAF +F + A +A
Sbjct: 54 GAEIFLGRLPRDCYEDELMPVLETIGYLIELRLMLD-FSGSTRGYAFASFEDVKTARRAC 112
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
+L+ E++ G +I + RLF G VP+N +++ + +TKI G+I I L
Sbjct: 113 AKLDGYEIRPGHRIGVVKSVDNCRLFFGGVPKNKSKEEFMQELTKILEGIIDIYLYPSAH 172
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR---NAESSAASQVK 294
+ NRGF F+E+ +H A +R+K+ + L D+ V WADP + V
Sbjct: 173 DKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEIMESVT 232
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
AL+V+NL D++Q +++++F + KI P ++ + + FVH+ R +A +
Sbjct: 233 ALFVRNLSLDMSQQKVRDIFQKNTKI------PILKLKKINHFAFVHYESRQAAQTVM 284
>gi|332026193|gb|EGI66335.1| APOBEC1 complementation factor [Acromyrmex echinatior]
Length = 466
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 133/260 (51%), Gaps = 13/260 (5%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G+EV+LG +P D +D+L + +G + E+R+M SG +GYAF F +A A
Sbjct: 54 GAEVFLGRLPRDCYEDELMPLLEQVGRLLELRLMLDF-SGSTRGYAFALFEDSRVARIAC 112
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
E L+ E++ G +I + RLF G VP+ + + + +TKI G+ I + Q
Sbjct: 113 ERLDGYEIRPGHRIGVVKSMDNCRLFFGGVPKTKTKPEFMEELTKILDGITDIYVYPSAQ 172
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR---NAESSAASQVK 294
+ N NRGF F+E+ +H A +R+K+ K L D+ V WADP + V
Sbjct: 173 DRNLNRGFIFVEFKDHRAAAMARRKLIPGKVMLWDHEIAVDWADPEPGDPIDEDIMETVT 232
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
AL+V+NL D++Q +++E+ + + P ++ + + FVH+ R +A +
Sbjct: 233 ALFVRNLALDMSQQKVREILYRYTNV------PILKLKKINHFAFVHYENREAAKTVMNI 286
Query: 355 TEKYE--IDGQVLDCSLAKP 372
E+ + ++ Q + AKP
Sbjct: 287 MERPDSIVEKQGWEIRWAKP 306
>gi|356503232|ref|XP_003520415.1| PREDICTED: uncharacterized protein LOC100779340 [Glycine max]
Length = 816
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 132/244 (54%), Gaps = 5/244 (2%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++GG+ DA++ DLR +G VTEVR+M + + KG+AF+ F T E A +A+ E
Sbjct: 233 EVFVGGLDKDATESDLRKAFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAE 292
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNA 239
L + + GK+ + +Q L++GN+ + W ++ +++ + G V + LV+D +
Sbjct: 293 LKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDE 352
Query: 240 NQNRGFAFIEY--YNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+NRGFAF+E+ + A + R + + F +D A VS+AD + +QVK +
Sbjct: 353 GKNRGFAFLEFPSRSEAMDAFKRLQRRDVVFGVDKPA-KVSFADSFIDPGDEIMAQVKTV 411
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
++ LP +D +++L +G+I K+ + P R YGFV F +A+K +
Sbjct: 412 FIDALPPSWDEDYVRDLLRKYGEIEKIELARNMPAARRKDYGFVTFGSHDAAVKCADSIT 471
Query: 357 KYEI 360
E+
Sbjct: 472 GTEL 475
>gi|47225126|emb|CAF98753.1| unnamed protein product [Tetraodon nigroviridis]
Length = 583
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 152/311 (48%), Gaps = 51/311 (16%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L + G++ E R+M + +GE +GYAFV + KE A +AI
Sbjct: 75 GCEVFVGKIPRDMYEDELVPLFERAGKLYEFRLMM-EFTGENRGYAFVMYTNKEAAQRAI 133
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
+ L++ +++ GK I + RLF+G++P+ +D++ + K+ GV+ + +
Sbjct: 134 QMLDNYKVRPGKFIGVCVSLDNCRLFLGSIPKEKTKDEVLAEMKKLTDGVVDVIMYPSST 193
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKM---------------------------------- 263
+ ++NRGFAF+EY +H A +R+K+
Sbjct: 194 DKSKNRGFAFVEYKSHKAAAMARRKLIPGTSLSSDSVRGSIVFCPSALGFFFFTSMCVSS 253
Query: 264 ----SNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHH- 317
+ F+L + V WA P ++ E +V+ LYV+NL + +++ L + F+H
Sbjct: 254 GRGCTTGTFQLWGQSIQVDWAQPEKDVEEEVMQRVRVLYVRNLMLNTSEETLFKAFSHFK 313
Query: 318 -GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
G + +V ++ + Y FVH+ R A+ AL IDG ++ LAKP +
Sbjct: 314 PGSVERV--------KKFTDYAFVHYYCREDALAALDPMNGVLIDGAAVEVMLAKPAISK 365
Query: 377 KTSGGSNSQKS 387
+ S GS S
Sbjct: 366 EDSSGSRRHGS 376
>gi|328786224|ref|XP_001120281.2| PREDICTED: APOBEC1 complementation factor-like [Apis mellifera]
Length = 477
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 129/238 (54%), Gaps = 11/238 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G+E++LG +P D +D+L ++IG + E+R+M SG +GYAF +F + A +A
Sbjct: 60 GAEIFLGRLPRDCYEDELMPVLETIGYLIELRLMLDF-SGSTRGYAFASFEDVKTARRAC 118
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
+L+ E++ G +I + RLF G VP+N +++ + +TKI G+I I L
Sbjct: 119 AKLDGYEIRPGHRIGVVKSVDNCRLFFGGVPKNKSKEEFMQELTKILEGIIDIYLYPSAH 178
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR---NAESSAASQVK 294
+ NRGF F+E+ +H A +R+K+ + L D+ V WADP + V
Sbjct: 179 DKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEIMESVT 238
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
AL+V+NL D++Q +++++F + KI P ++ + + FVH+ R +A +
Sbjct: 239 ALFVRNLNLDMSQQKVRDIFQKNTKI------PILKLKKINHFAFVHYENRQAAQTVM 290
>gi|224097146|ref|XP_002310851.1| predicted protein [Populus trichocarpa]
gi|222853754|gb|EEE91301.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 134/244 (54%), Gaps = 4/244 (1%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
E+++GG+ DA+++DLR + IGEV EVR+ K + KGYAFV F K +A+ E
Sbjct: 27 EIFVGGLDRDATEEDLRKVFEKIGEVVEVRLHKNLSTNRNKGYAFVKFANKGHVKRALSE 86
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGP-GVISIELVKDPQNA 239
+ + ++GK+ + ++ LF+GN+ W ++ +R+ + G GV +I +V D Q+
Sbjct: 87 MKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGVEGVENITVVPDAQHE 146
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPK--FKLDDNAPTVSWADP-RNAESSAASQVKAL 296
++RGFAF+E+ H A + +++ P F + V++++P R + +QVK +
Sbjct: 147 GRSRGFAFLEFACHTDAMLAYKRLQKPDVVFGHPERTAKVAFSEPIREPDPEIMAQVKTI 206
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
++ LP +D ++E +G+I ++V+ +R +GFV F+ +A+ ++
Sbjct: 207 FLDGLPPHWDEDHVRECVKGYGEIVRIVLARNMSTAKRKDFGFVDFSTHEAAVACIEGIN 266
Query: 357 KYEI 360
E
Sbjct: 267 NREF 270
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 80/161 (49%), Gaps = 17/161 (10%)
Query: 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 259
+ +F+G + R+ E+D+RK KIG V+ + L K+ + N+N+G+AF+++ N + +
Sbjct: 26 YEIFVGGLDRDATEEDLRKVFEKIGE-VVEVRLHKN-LSTNRNKGYAFVKFANKGHVKRA 83
Query: 260 RQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 319
+M NP + + ++ + L++ N+ T++ +++ +G
Sbjct: 84 LSEMKNPVIR------------GKRCGTAPSEDNDTLFLGNICNTWTKEAIRQKLKDYGV 131
Query: 320 --ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEK 357
+ + + P + RSR + F+ FA + AM A K +K
Sbjct: 132 EGVENITVVPDAQHEGRSRGFAFLEFACHTDAMLAYKRLQK 172
>gi|426221982|ref|XP_004005184.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Ovis aries]
Length = 598
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 129/238 (54%), Gaps = 43/238 (18%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVK 294
P + +NRGF F+EY +H +A+QVK
Sbjct: 281 QPDDKKKNRGFCFLEYEDH----------------------------------KSAAQVK 306
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 307 VLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 356
>gi|356522972|ref|XP_003530116.1| PREDICTED: uncharacterized protein LOC100777658 [Glycine max]
Length = 866
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 132/244 (54%), Gaps = 5/244 (2%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++GG+ DA++ DLR +G VTEVR+M + + KG+AF+ F T E A +A+ E
Sbjct: 283 EVFVGGLDKDATESDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAE 342
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNA 239
L + + GK+ + +Q L++GN+ + W ++ +++ + G V + LV+D +
Sbjct: 343 LKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDE 402
Query: 240 NQNRGFAFIEY--YNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+NRGFAF+E+ + A + R + + F +D A VS+AD + +QVK +
Sbjct: 403 GKNRGFAFLEFPSRSEAMDAFKRLQRRDVVFGVDKLA-KVSFADSFIDPGDEIMAQVKTV 461
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
++ LP +D +++L +G+I K+ + P R YGFV F +A+K +
Sbjct: 462 FIDALPPSWDEDYVRDLLRKYGEIEKIELARNMPAARRKDYGFVTFGTHDAAVKCADSIT 521
Query: 357 KYEI 360
E+
Sbjct: 522 GTEL 525
>gi|343172764|gb|AEL99085.1| RNA recognition motif-containing protein, partial [Silene
latifolia]
Length = 507
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 139/244 (56%), Gaps = 4/244 (1%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
E+++GG+ + ++DL+ + +GEV EVR++K + + +G FV F TK+ A +A+ E
Sbjct: 153 EIFIGGLDCEVVEEDLKMAFEKVGEVVEVRLLKDSCTNKNRGCGFVRFATKDQAKKALSE 212
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNA 239
+ + + GK+ +A++ LFIGN+ W ++ + K + + GV +I LV+DP++
Sbjct: 213 MKNPVISGKRCGTAASEDNDTLFIGNICNTWTKEAITKKLKEYNLEGVENITLVQDPRHE 272
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPK--FKLDDNAPTVSWADP-RNAESSAASQVKAL 296
+RGF FI++ H A ++ +++ P F + V++++P + + ++VK++
Sbjct: 273 GLSRGFCFIQFACHDDAMFAFKRLQKPDVIFGHAERTVKVAFSEPLQEPDPEIMAKVKSV 332
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
++ LP +DR+++ F +G+I +V + P +R +GFV F +A+ + +
Sbjct: 333 FIDGLPPYWDEDRVRKHFQGYGEIERVTLARNMPAAKRKDFGFVDFLTHEAAIACIDDIN 392
Query: 357 KYEI 360
K ++
Sbjct: 393 KKDL 396
>gi|301611921|ref|XP_002935471.1| PREDICTED: APOBEC1 complementation factor-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 579
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 108/384 (28%), Positives = 186/384 (48%), Gaps = 47/384 (12%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G E+++G +P D +D+L C+ G+V E+R+M + G +GYAFVTF ++ A AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKTGKVYEMRMMMDFN-GNNRGYAFVTFTNRQDARDAI 113
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREEILVEMRKVTDGVLDVIVYPSAA 173
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ ++NRGFAF+EY +H A +R+K+ + +L + V WA+P + S VK L
Sbjct: 174 DKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKIL 233
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER-SRYGFVHFAERSSAMKALKNT 355
YV+NL ++ +++ F++ KPG++ Y + K +
Sbjct: 234 YVRNLMLTTAEETIEKEFSN-----------VKPGKKHLCLYCTSIILNLHTIKKMITIL 282
Query: 356 EKYEIDGQVLDCSLAKP---QADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAG 412
IDG ++ +LAKP ++ + + G+ + +A+ Y AY +G
Sbjct: 283 CLQIIDGSPIEVTLAKPVDKESYVRYTRGTGGRGAAIQGEY-----------AY-TIGHV 330
Query: 413 YVP--AGFAQPMVYGRGAAPGGMAMLPML-LPDGRIGYVLQQPGVQQHNPPPQPRSGRGG 469
Y P A P+ Y A P A +P + P + GYV + V +P S RG
Sbjct: 331 YDPTTAYLGAPVFY---APPAYTAAIPSIQFPPAK-GYVSNRSLV-------RPPSVRGA 379
Query: 470 AGSSSSGGR---RSTDNGRGRSRY 490
AG GGR T GRG + +
Sbjct: 380 AGVRGLGGRGYLAYTGLGRGYAGF 403
>gi|359488537|ref|XP_003633774.1| PREDICTED: uncharacterized protein LOC100853981 [Vitis vinifera]
Length = 787
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 126/216 (58%), Gaps = 13/216 (6%)
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR 201
+ GE+ EVR+M ++ G++KGY FV F TKE A++AI+E + ++GKKI + +
Sbjct: 199 TCGEIIEVRMMTDQN-GKSKGYCFVRFTTKEAANKAIKEKSGFMVEGKKIGVVPSTDQTT 257
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN-------QNRGFAFIEYYNHA 254
LF GN+P++W D+ K V + V S++L + + QNRGFAF+++ +HA
Sbjct: 258 LFFGNLPKDWSPDEFDKMVCQAFQDVTSVDLAMPFGSGDTSLGQKQQNRGFAFVKFSSHA 317
Query: 255 CAEYSRQKMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKEL 313
A + + S F L D+ P V WA+ + +++ +V NLPKD +D LK+L
Sbjct: 318 AAARAHRMGSKSDFLLGDSWHPVVEWAEEPEIDPEELAKITIAFVGNLPKDANEDYLKKL 377
Query: 314 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
F GK+ KV++ +K GQ S GFVHFA+RS +
Sbjct: 378 FGPFGKVEKVLL--SKKGQ--SPVGFVHFAKRSCLL 409
>gi|149062706|gb|EDM13129.1| apobec-1 complementation factor, isoform CRA_c [Rattus norvegicus]
Length = 586
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 142/264 (53%), Gaps = 27/264 (10%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFED--------IGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 102
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 103 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 162
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+++ + +L + V WA+P + S V
Sbjct: 163 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 222
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F KPG ER + Y FVHF+ R A
Sbjct: 223 KILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVERVKKIRDYAFVHFSNREDA 271
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 272 VEAMKALNGKVLDGSPIEVTLAKP 295
>gi|149062707|gb|EDM13130.1| apobec-1 complementation factor, isoform CRA_d [Rattus norvegicus]
Length = 578
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 142/264 (53%), Gaps = 27/264 (10%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFED--------IGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 102
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 103 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 162
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+++ + +L + V WA+P + S V
Sbjct: 163 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 222
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F KPG ER + Y FVHF+ R A
Sbjct: 223 KILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVERVKKIRDYAFVHFSNREDA 271
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 272 VEAMKALNGKVLDGSPIEVTLAKP 295
>gi|149062704|gb|EDM13127.1| apobec-1 complementation factor, isoform CRA_a [Rattus norvegicus]
Length = 375
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 142/264 (53%), Gaps = 27/264 (10%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFED--------IGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 102
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 103 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 162
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+++ + +L + V WA+P + S V
Sbjct: 163 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 222
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F KPG ER + Y FVHF+ R A
Sbjct: 223 KILYVRNLMLSTSEEMIEKEFNS-----------IKPGAVERVKKIRDYAFVHFSNREDA 271
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 272 VEAMKALNGKVLDGSPIEVTLAKP 295
>gi|340711039|ref|XP_003394089.1| PREDICTED: APOBEC1 complementation factor-like [Bombus terrestris]
Length = 471
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 126/238 (52%), Gaps = 11/238 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G+E++LG +P D +D+L +++G + E+R+M SG +GYAF F ++A A
Sbjct: 56 GAEIFLGRLPRDCYEDELMPMLETVGRLIELRLMLDF-SGSTRGYAFALFENSKIARSAC 114
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
+L+ E++ G +I + RLF G VP+N +++ + + KI G+I I L
Sbjct: 115 AKLDGYEIRHGHRIGVVKSVDNCRLFFGGVPKNKCKEEFMQELNKILEGIIDIYLYPSAH 174
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR---NAESSAASQVK 294
+ NRGF F+E+ +H A +R+K+ + L D+ V WADP + V
Sbjct: 175 DKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEVMENVT 234
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
AL+V+NL ++ Q +++++F + KI P ++ + + FVH+ R +A +
Sbjct: 235 ALFVRNLSLNMPQQKIRDIFQKNTKI------PILKLKKINHFAFVHYENRKAAQNVM 286
>gi|356531832|ref|XP_003534480.1| PREDICTED: uncharacterized protein LOC100811387 [Glycine max]
Length = 778
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 101/347 (29%), Positives = 174/347 (50%), Gaps = 29/347 (8%)
Query: 28 ESEERVDLDEDNDHEEEVEEE--VEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGIDA 85
E +E +D EDN E E EE V+Y+E +E+E +E EE E EE+ E++V +
Sbjct: 86 EKDEHLDF-EDNYPEYEAEEYGGVDYDE----KEIEQDEGQEEGDEVEEDPEEIVGEEEG 140
Query: 86 QKH-----------------YDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIP 128
+ G+E D + E+ + EV++GG+
Sbjct: 141 DTGDEEVEYVYEEVEDDDDEHAGEEHEHAQMPDVEQEEHREVVKERRKRKEFEVFVGGLD 200
Query: 129 HDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG 188
DA++ DL+ +G VTEVR+M + KG+AF+ F T E A +A+ EL + + G
Sbjct: 201 KDATEHDLKKVFGKVGVVTEVRLMINPQTKRNKGFAFLRFETVEQARRAVVELKNPVING 260
Query: 189 KKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAF 247
K+ + +Q L++GN+ + W ++ +++ + G V + L++D N NRGFAF
Sbjct: 261 KRCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVEDVEDLTLIEDDTNEGMNRGFAF 320
Query: 248 IEYYNHACAE--YSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKD 304
+E+ + + A+ Y R + + F +D A VS+AD + +QVK +++ +LP
Sbjct: 321 LEFSSRSDAKEAYKRLQKRDVAFGVDKPA-KVSFADSFIDLGDEIMAQVKTVFIDSLPPS 379
Query: 305 ITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+D +++L +G+I KV + P R YGFV F+ +A++
Sbjct: 380 WNEDYVRDLLKKYGEIEKVELAKDMPAARRKNYGFVTFSTHVAAVEC 426
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ +P ++D +R K GE+ +V + K + K Y FVTF T A + + +
Sbjct: 371 VFIDSLPPSWNEDYVRDLLKKYGEIEKVELAKDMPAARRKNYGFVTFSTHVAAVECADSI 430
Query: 182 NSCEL 186
S L
Sbjct: 431 TSAGL 435
>gi|149062705|gb|EDM13128.1| apobec-1 complementation factor, isoform CRA_b [Rattus norvegicus]
Length = 397
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 142/264 (53%), Gaps = 27/264 (10%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFED--------IGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 102
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 103 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 162
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQV 293
+ +NRGFAF+EY +H A +R+++ + +L + V WA+P + S V
Sbjct: 163 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSV 222
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSA 348
K LYV+NL +++ +++ F KPG ER + Y FVHF+ R A
Sbjct: 223 KILYVRNLMLSTSEEMIEKEFN-----------SIKPGAVERVKKIRDYAFVHFSNREDA 271
Query: 349 MKALKNTEKYEIDGQVLDCSLAKP 372
++A+K +DG ++ +LAKP
Sbjct: 272 VEAMKALNGKVLDGSPIEVTLAKP 295
>gi|350400746|ref|XP_003485944.1| PREDICTED: APOBEC1 complementation factor-like [Bombus impatiens]
Length = 463
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 126/238 (52%), Gaps = 11/238 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G+E++LG +P D +D+L +++G + E+R+M SG +GYAF F ++A A
Sbjct: 45 GAEIFLGRLPRDCYEDELMPMLETVGRLIELRLMLD-FSGSTRGYAFALFENSKIARSAC 103
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
+L+ E++ G +I + RLF G VP+N +++ + + KI G+I I L
Sbjct: 104 AKLDGYEIRHGHRIGVVKSVDNCRLFFGGVPKNKCKEEFMQELNKILEGIIDIYLYPSAH 163
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR---NAESSAASQVK 294
+ NRGF F+E+ +H A +R+K+ + L D+ V WADP + V
Sbjct: 164 DKTLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEEVMENVT 223
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
AL+V+NL ++ Q +++++F + KI P ++ + + FVH+ R +A +
Sbjct: 224 ALFVRNLSLNMPQQKIRDIFQKNTKI------PILKLKKINHFAFVHYENRKAAQSVM 275
>gi|115459706|ref|NP_001053453.1| Os04g0543200 [Oryza sativa Japonica Group]
gi|38345947|emb|CAE04271.2| OSJNBb0103I08.18 [Oryza sativa Japonica Group]
gi|38345949|emb|CAE04337.2| OSJNBb0038F03.1 [Oryza sativa Japonica Group]
gi|113565024|dbj|BAF15367.1| Os04g0543200 [Oryza sativa Japonica Group]
gi|215678877|dbj|BAG95314.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215717042|dbj|BAG95405.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 774
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 138/260 (53%), Gaps = 9/260 (3%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++GG+ DA++ DLR +GE+TEVR+M + + KG+AF+ + T E A +A+ E
Sbjct: 191 EVFVGGLDKDATESDLRKVFGEVGEITEVRLMMNPVTKKNKGFAFLRYATVEQARRAVSE 250
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNA 239
L + ++GK+ + + LF+GN+ + W ++ +++ + G + LV+D N
Sbjct: 251 LKNPSVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKEKLKSYGVENFDDLLLVEDSNNP 310
Query: 240 NQNRGFAFIEYYNH--ACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
NRG+A +E+ A + R + + F +D +A VS+AD + +QV+ +
Sbjct: 311 GMNRGYALLEFSTRPEAMDAFRRLQKRDVVFGVDRSA-KVSFADSYPEVDDEIMAQVRTV 369
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA---LK 353
++ LP +DR+K+ +G I KV + P +R +GFV F +A+ +
Sbjct: 370 FIDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFVTFDTHDNAVACADGIT 429
Query: 354 NTEKYEIDGQV-LDCSLAKP 372
N+E E D + + L++P
Sbjct: 430 NSEIGEGDSKAKVRARLSRP 449
>gi|195569361|ref|XP_002102678.1| GD19374 [Drosophila simulans]
gi|194198605|gb|EDX12181.1| GD19374 [Drosophila simulans]
Length = 350
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 119/199 (59%), Gaps = 10/199 (5%)
Query: 181 LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNA 239
L++ E+K GK +K + + RLF+GN+P++ G+D++ + K+ G+ + + P +
Sbjct: 5 LDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIYSSPDDK 64
Query: 240 NQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKALYV 298
+NRGF F+EY +H A +++++ + K+ V WADP+ + S+VK LYV
Sbjct: 65 KKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKVKVLYV 124
Query: 299 KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKY 358
+NL +D+++D+LKE F +GK+ +V ++ Y F+HF +R SA++A++
Sbjct: 125 RNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHFEDRDSAVEAMRGLNGK 176
Query: 359 EIDGQVLDCSLAKPQADQK 377
EI ++ SLAKP +D+K
Sbjct: 177 EIGASNIEVSLAKPPSDKK 195
>gi|255569500|ref|XP_002525717.1| conserved hypothetical protein [Ricinus communis]
gi|223535017|gb|EEF36700.1| conserved hypothetical protein [Ricinus communis]
Length = 1034
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 165/325 (50%), Gaps = 26/325 (8%)
Query: 64 EEVEEEVEEEEETEDVVDGIDAQKHYDG----DEEM---KVAESDKDDEKKKHAELLAL- 115
E V ++ + +E V+ +D+ YD D EM ++A S EL AL
Sbjct: 442 EVVNADIVGDTNSEGVIQVLDSSNGYDQGGKEDNEMNNGRIALS---------GELEALE 492
Query: 116 --PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
+E+++GG+ DA ++D+R ++GE+ E+R++ +G+ K +AF+ + +
Sbjct: 493 RRRRRRTEIFIGGLSTDAREEDIRKVFGAVGEIVELRLVTNSKTGKNKRFAFLRYSSAAD 552
Query: 174 ASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI-SIEL 232
A +A+E+ E+ GK+ + + +F+GN+ + W D+ K + +IG I + +
Sbjct: 553 AKKALEKYAKVEICGKQCAVAPVEGNDTIFLGNIDKKWTNGDVIKLLQEIGIEKIDKVIV 612
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAAS 291
+ DP N +NRGFAF+E H A+ + +K+ N V+WA+P + +
Sbjct: 613 MTDPSNVGRNRGFAFVELETHKDAQIAFKKLHKKDLGKLQNI-KVAWAEPLSEPDEEELL 671
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+VK++Y + LP +++L+ F G+I +V+ R + F++F+ R +A+
Sbjct: 672 KVKSVYAEYLPPSWDEEKLRSYFTKFGEIENIVLSRNLHSSRRKDFAFINFSTREAALAC 731
Query: 352 LKNT--EKYEIDGQVLD--CSLAKP 372
+++ E +G ++ SLAKP
Sbjct: 732 IESFYHETLTNEGSQVNVKVSLAKP 756
>gi|67972374|dbj|BAE02529.1| unnamed protein product [Macaca fascicularis]
Length = 414
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 132/253 (52%), Gaps = 19/253 (7%)
Query: 133 DDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKI 191
+D+L + G++ E R+M + SGE +GYAFV + TKE A AI LN+ E++ GK I
Sbjct: 3 EDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFI 61
Query: 192 KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYY 251
+ RLFIG +P+ ++++ + K+ GV+ + + + +NRGFAF+EY
Sbjct: 62 GVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYE 121
Query: 252 NHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRL 310
+H A +R+K+ F+L + V WADP + + +VK LYV+NL T++ +
Sbjct: 122 SHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETI 181
Query: 311 KELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKALKNTEKYEIDGQVL 365
K F KPG ER + Y FVHF R A+ A+ IDG +
Sbjct: 182 KAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASI 230
Query: 366 DCSLAKPQADQKT 378
+ +LAKP + T
Sbjct: 231 EVTLAKPVNKENT 243
>gi|207080144|ref|NP_001128783.1| DKFZP469N2326 protein [Pongo abelii]
gi|55727921|emb|CAH90713.1| hypothetical protein [Pongo abelii]
Length = 550
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 129/238 (54%), Gaps = 13/238 (5%)
Query: 146 VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFI 204
+ E+R+M D G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFI
Sbjct: 54 IYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGACCSVDNCRLFI 112
Query: 205 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 264
G +P+ +++ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+
Sbjct: 113 GGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 172
Query: 265 NPKFKLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKIT 321
+ +L + V WA+P + + VK LYV+NL + T+D +K+ F G +
Sbjct: 173 PGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVE 232
Query: 322 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 379
+V ++ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S
Sbjct: 233 RV--------KKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYS 282
>gi|307181116|gb|EFN68850.1| Probable RNA-binding protein 46 [Camponotus floridanus]
Length = 471
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 123/243 (50%), Gaps = 11/243 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
GSE++LG +P D +D+L + +G + E+R+M SG +GYAF + T +A +A
Sbjct: 53 GSEIFLGRLPRDCYEDELMPVLEQVGRLLELRLMLDF-SGSTRGYAFALYETPRIAREAC 111
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
L+ E++ G +I + RLF G VP+N + + +TK+ + I L
Sbjct: 112 RRLDGYEIRRGHRIGVVKSMDNCRLFFGGVPKNKTKPEFMAELTKMLDDITDIYLYPSAH 171
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE---SSAASQVK 294
+ + NRGF F+E+ +H A +R+K+ K L D+ V WADP E +V
Sbjct: 172 DRSLNRGFIFVEFKDHRAAAMARRKLIPGKVTLWDHEIAVDWADPEPGEPIDEDIMERVT 231
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
L+V+NL DI+Q ++ +F H + P ++ + + F+H+ R +A +
Sbjct: 232 TLFVRNLALDISQQNVRGIFHRHTNV------PILKLKKINHFAFIHYENRQAAQIVMDI 285
Query: 355 TEK 357
+K
Sbjct: 286 MQK 288
>gi|3309585|gb|AAC26114.1| putative RNA binding protein RNP [Dictyostelium discoideum]
Length = 551
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 144/308 (46%), Gaps = 54/308 (17%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCK--SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
+E++ GG+ ++++L S V E+R+MK K +GE+KG+ FV F + +
Sbjct: 91 NNEIFFGGVNKTVNEEELLEIFNENSDNNVLEIRLMKDKLTGESKGFGFVLFNDRSMCRN 150
Query: 177 AIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDP 236
I++LN +KGK I+ ++ K +LFIGN+P++ ++ + G+ SI+ + P
Sbjct: 151 VIDKLNGKSIKGKIIEVKLSENKRKLFIGNLPKDLSKEQFISIFNEKTEGIESIDFLMSP 210
Query: 237 QNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD--NAPTVSWADPR------NAESS 288
N+NRGFAFIEY +H A+ +R+ ++ KL D TV+W+DP +
Sbjct: 211 DQPNKNRGFAFIEYQDHYLADTARRILTASTVKLGDYITTLTVNWSDPDPTTLDPQNDPL 270
Query: 289 AASQVKALYVKNLP-------------KDITQDRLKELF-----AHHGKITKVVIPPAKP 330
++KA+Y++NLP DI Q+ + I K++IP P
Sbjct: 271 ENKEIKAIYIRNLPLNHRNDLSITKIINDIIQENSLSILNNNNNNKDDIIEKIIIPQGAP 330
Query: 331 GQE------------------------RSRYGFVHFAERSSAMKALKNTEK--YEIDGQV 364
E + Y FVH R A + L+ E+ I+G+V
Sbjct: 331 TLEIINNLNNNLNNNNINNNNNSLNNSKRDYAFVHLKTRELAEEILRIHEEKPININGKV 390
Query: 365 LDCSLAKP 372
L S AKP
Sbjct: 391 LSLSFAKP 398
>gi|383850788|ref|XP_003700956.1| PREDICTED: APOBEC1 complementation factor-like [Megachile
rotundata]
Length = 479
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 122/238 (51%), Gaps = 11/238 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G+E++LG +P D +D+L + +G + E+R+M SG +GYAF F + A A
Sbjct: 60 GAEIFLGRLPRDCYEDELMPMLEKVGRLMELRLMLD-FSGSTRGYAFALFEDSKTARNAC 118
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
+L+ E++ G +I + RLF G VP+N +++ + KI G+ I L
Sbjct: 119 AKLDGYEVRPGHRIGVVKSVDNCRLFFGGVPKNKSKEEFMTELNKILEGITDIYLYPSAH 178
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR---NAESSAASQVK 294
+ + NRGF F+E+ +H A +R+K+ + L D+ V WADP + V
Sbjct: 179 DKSLNRGFIFVEFKDHRAAAMARRKLIPGRVMLWDHEIAVDWADPEPGDPIDEDVMENVT 238
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
AL+V+NL D+ Q +++E+F KI P ++ + + F+H+ R +A +
Sbjct: 239 ALFVRNLSLDVQQQKIREIFQKSTKI------PILKLKKINHFAFIHYESRQAAQAVM 290
>gi|324508419|gb|ADY43553.1| RNA-binding protein 47 [Ascaris suum]
Length = 558
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 132/266 (49%), Gaps = 20/266 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G+EV++G +P SD L ++G + E+R M + SG +GY F +++ E A
Sbjct: 58 PPRGTEVFVGKLPRAISDMRLIQVLSAVGPLYELRQML-EPSGVNRGYCFAVYQSLEGAK 116
Query: 176 QAIEE---LNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+A E LN+ E++ G++I + RLFIG +PR D + + K G +
Sbjct: 117 RACIESLQLNNVEIEPGRRIGVVRSVDNRRLFIGGIPREIKADQIIAEIRKHTEGAEELV 176
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAA 290
+ + ++NRGFAF+EY +H A Y+R+K L + WA+P + +S
Sbjct: 177 VYPSILDKSRNRGFAFVEYRDHKSAAYARKKFLQEPLILWGKTVCIDWAEPEQQVDSDIM 236
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR----YGFVHFAERS 346
VK LYV+NL + + L++ F G I + ER + + FVHF R
Sbjct: 237 ENVKILYVRNLMLNTDEITLRKYF-EMGDIHCI---------ERVKKIRDFAFVHFTTRE 286
Query: 347 SAMKALKNTEKYEIDGQVLDCSLAKP 372
A+ AL ++DG ++ LAKP
Sbjct: 287 KALNALNKLNHTKLDGSTIEVCLAKP 312
>gi|355715825|gb|AES05414.1| RNA binding motif protein 47 [Mustela putorius furo]
Length = 387
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 130/247 (52%), Gaps = 19/247 (7%)
Query: 158 GEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDM 216
G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++
Sbjct: 1 GKNRGYAFVMYCHKSEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEI 60
Query: 217 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPT 276
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 61 LEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 120
Query: 277 VSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQE 333
V WA+P + + VK LYV+NL + T+D +K+ F G + +V ++
Sbjct: 121 VDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERV--------KK 172
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS-------GGSNSQK 386
Y FVHF R A+ A+ N E++G L+ +LAKP ++ S GG ++
Sbjct: 173 IRDYAFVHFVSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGVAEA 232
Query: 387 SALNPTY 393
+ P+Y
Sbjct: 233 AVQQPSY 239
>gi|189234902|ref|XP_967881.2| PREDICTED: similar to APOBEC-1 complementation factor long
[Tribolium castaneum]
Length = 311
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 130/265 (49%), Gaps = 20/265 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G+E+++G +P D +D+L G + +R+M G +GY F+++ T+E A
Sbjct: 41 PPKGTEIFIGNLPPDLYEDELIPLFSQKGPIYNLRLMMD-FFGRTRGYGFISYFTQEDAH 99
Query: 176 QAIEELNSCELKGK-KIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
A+ N+ +++ K KI S + RLFIGN+PR+ +++ + K G++ I
Sbjct: 100 AAVAAFNNYKIRNKGKIAVSMSVDNRRLFIGNIPRHVTLSEIQSVLEKYVEGIVDIIFYH 159
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES-SAASQV 293
+P N + NRGF F+E+ +H A +R+++S + V WA+P + QV
Sbjct: 160 EPYNDSINRGFIFVEFESHRLAAIARRQLSPGNLTIWGKPIFVDWAEPLPVVNPQILKQV 219
Query: 294 KALYVKNLPKDITQDRLKELF------AHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
LY+ NLP ++ + LK +H K+ K+ + + FVHF R
Sbjct: 220 TKLYLSNLPMTLSSEELKSFLCELLDPSHIIKVHKI-----------NNFAFVHFTLRKY 268
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKP 372
A +A + + +++ A+P
Sbjct: 269 AEEAFRKLTGLVMMDKLIGVEWARP 293
>gi|296082223|emb|CBI21228.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 135/252 (53%), Gaps = 19/252 (7%)
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNW 211
M +G++KGY FV F TKE A++AI+E + ++GKKI + + LF GN+P++W
Sbjct: 1 MMTDQNGKSKGYCFVRFTTKEAANKAIKEKSGFMVEGKKIGVVPSTDQTTLFFGNLPKDW 60
Query: 212 GEDDMRKAVTKIGPGVISIELVKDPQNAN-------QNRGFAFIEYYNHACAEYSRQKMS 264
D+ K V + V S++L + + QNRGFAF+++ +HA A + + S
Sbjct: 61 SPDEFDKMVCQAFQDVTSVDLAMPFGSGDTSLGQKQQNRGFAFVKFSSHAAAARAHRMGS 120
Query: 265 NPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKV 323
F L D+ P V WA+ + +++ +V NLPKD +D LK+LF GK+ KV
Sbjct: 121 KSDFLLGDSWHPVVEWAEEPEIDPEELAKITIAFVGNLPKDANEDYLKKLFGPFGKVEKV 180
Query: 324 VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV------LDCSLAKPQADQK 377
++ +K GQ S GFVHFA+RS A+K + + G L ++AKP ++
Sbjct: 181 LL--SKKGQ--SPVGFVHFAKRSDLDNAIKEMNEKTVQGPSRGPAFKLQVAVAKPLDRKR 236
Query: 378 TSGGSNSQ-KSA 388
SQ KSA
Sbjct: 237 KRARDESQSKSA 248
>gi|301611919|ref|XP_002935470.1| PREDICTED: APOBEC1 complementation factor-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 587
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 108/389 (27%), Positives = 186/389 (47%), Gaps = 49/389 (12%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G E+++G +P D +D+L C+ G+V E+R+M + G +GYAFVTF ++ A AI
Sbjct: 55 GCEIFIGKLPRDLFEDELIPLCEKTGKVYEMRMMMDFN-GNNRGYAFVTFTNRQDARDAI 113
Query: 179 EELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + +
Sbjct: 114 KQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKRREEILVEMRKVTDGVLDVIVYPSAA 173
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
+ ++NRGFAF+EY +H A +R+K+ + +L + V WA+P + S VK L
Sbjct: 174 DKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKIL 233
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER-SRYGFVHFAERSSAMKALKNT 355
YV+NL ++ +++ F++ KPG++ Y + K +
Sbjct: 234 YVRNLMLTTAEETIEKEFSN-----------VKPGKKHLCLYCTSIILNLHTIKKMITIL 282
Query: 356 EKYEIDGQVLDCSLAKP---QADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAG 412
IDG ++ +LAKP ++ + + G+ + +A+ Y AY +G
Sbjct: 283 CLQIIDGSPIEVTLAKPVDKESYVRYTRGTGGRGAAIQGEY-----------AY-TIGHV 330
Query: 413 YVP--AGFAQPMVYGRGAAPGGMAMLPML-LPDGRIGYVLQQPGVQQHNPPPQPRSGR-- 467
Y P A P+ Y A P A +P + P + GYV + V+ PP R
Sbjct: 331 YDPTTAYLGAPVFY---APPAYTAAIPSIQFPPAK-GYVSNRSLVR----PPSVREIYMS 382
Query: 468 ---GGAGSSSSGGR---RSTDNGRGRSRY 490
G AG GGR T GRG + +
Sbjct: 383 VPVGAAGVRGLGGRGYLAYTGLGRGYAGF 411
>gi|326497027|dbj|BAK02098.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 776
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 129/249 (51%), Gaps = 15/249 (6%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++GG+ DA++ DLR +GE+TEVR+M + + KG+AF+ F T E A +A+ +
Sbjct: 195 EVFVGGLDKDATESDLRKVFSEVGEITEVRLMMNPVTKKNKGFAFLRFETVEQAKRAVSD 254
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE------LVK 234
L + ++GK+ + ++ LF+GN+ + W ++ ++ + + +E LV+
Sbjct: 255 LKNPMVRGKQCGVAPSRDNDTLFVGNICKTWTKEHLKDKLK-----IYEVENFDDLILVE 309
Query: 235 DPQNANQNRGFAFIEYYNH--ACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAAS 291
D N NRG+A +E+ A + R + + F +D A VS+AD + +
Sbjct: 310 DSNNPGMNRGYALLEFSTRPEAMDAFRRLQKRDVVFGVDRTA-KVSFADSYPEVDDEMMA 368
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
QV+ +++ LP +DR+K+ +G I KV + P +R +GFV F +A+
Sbjct: 369 QVRTVFLDGLPPSWEEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFVTFDTHDNAVAC 428
Query: 352 LKNTEKYEI 360
+ EI
Sbjct: 429 VDGITSSEI 437
>gi|66812128|ref|XP_640243.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|37693753|gb|AAQ98887.1| RNA-binding protein [Dictyostelium discoideum]
gi|60468259|gb|EAL66268.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 551
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 109/194 (56%), Gaps = 10/194 (5%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCK--SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
+E++ GG+ ++++L S V E+R+MK K +GE+KG+ FV F + +
Sbjct: 91 NNEIFFGGVNKTVNEEELLEIFNENSDNNVLEIRLMKDKLTGESKGFGFVLFNDRSMCRN 150
Query: 177 AIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDP 236
I++LN +KGK I+ ++ K +LFIGN+P++ ++ + G+ SI+ + P
Sbjct: 151 VIDKLNGKSIKGKIIEVKQSENKRKLFIGNLPKDLSKEQFISIFNEKTEGIESIDFLMSP 210
Query: 237 QNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD--NAPTVSWADPR------NAESS 288
N+NRGFAFIEY +H A+ +R+ ++ KL D TV+W+DP +
Sbjct: 211 DQPNKNRGFAFIEYQDHYLADTARRILTASTVKLGDYITTLTVNWSDPDPTTLDPQNDPL 270
Query: 289 AASQVKALYVKNLP 302
++KA+Y++NLP
Sbjct: 271 ENKEIKAIYIRNLP 284
>gi|356568565|ref|XP_003552481.1| PREDICTED: uncharacterized protein LOC100808583 [Glycine max]
Length = 785
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 131/235 (55%), Gaps = 5/235 (2%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++GG+ DA++ DL+ +G VTEVR+M + KG+AF+ F T E A +A+ E
Sbjct: 199 EVFVGGLDKDATEHDLKKVFGKVGVVTEVRLMINPQTKRNKGFAFLRFETVEQARRAVVE 258
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNA 239
L + + GK+ + +Q L++GN+ + W ++ +++ + G V + L++D N
Sbjct: 259 LKNPVINGKQCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVENVEDLTLIEDGTNE 318
Query: 240 NQNRGFAFIEYYNHACAE--YSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
NRGFAF+E+ + + A+ Y R + + F +D A VS+AD + +QVK +
Sbjct: 319 GMNRGFAFLEFSSRSDAKEAYRRLQKRDVAFGVDKPA-KVSFADSFIDLGDEIMAQVKTV 377
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+V +LP + +++L +G+I K+ + P R YGFV F+ ++A++
Sbjct: 378 FVDSLPPSWDEVYVRDLLKKYGEIEKIELAKDMPAARRKNYGFVTFSTHAAAVEC 432
>gi|270002295|gb|EEZ98742.1| hypothetical protein TcasGA2_TC001297 [Tribolium castaneum]
Length = 672
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 130/265 (49%), Gaps = 20/265 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G+E+++G +P D +D+L G + +R+M G +GY F+++ T+E A
Sbjct: 402 PPKGTEIFIGNLPPDLYEDELIPLFSQKGPIYNLRLMMDF-FGRTRGYGFISYFTQEDAH 460
Query: 176 QAIEELNSCELKGK-KIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
A+ N+ +++ K KI S + RLFIGN+PR+ +++ + K G++ I
Sbjct: 461 AAVAAFNNYKIRNKGKIAVSMSVDNRRLFIGNIPRHVTLSEIQSVLEKYVEGIVDIIFYH 520
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES-SAASQV 293
+P N + NRGF F+E+ +H A +R+++S + V WA+P + QV
Sbjct: 521 EPYNDSINRGFIFVEFESHRLAAIARRQLSPGNLTIWGKPIFVDWAEPLPVVNPQILKQV 580
Query: 294 KALYVKNLPKDITQDRLKELF------AHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
LY+ NLP ++ + LK +H K+ K+ + + FVHF R
Sbjct: 581 TKLYLSNLPMTLSSEELKSFLCELLDPSHIIKVHKI-----------NNFAFVHFTLRKY 629
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKP 372
A +A + + +++ A+P
Sbjct: 630 AEEAFRKLTGLVMMDKLIGVEWARP 654
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 136/269 (50%), Gaps = 16/269 (5%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
GSE+++G IP D +D+L + + + R+M +G +G+AFVT+ A +A+
Sbjct: 30 GSEIFVGNIPRDLFEDELIPLFSQVAPIYKFRLMMDF-TGNTRGFAFVTYYNVWDAQKAV 88
Query: 179 EELN----SCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+ N + + ++ + RLF GNVP++ DD+ + K G++ +
Sbjct: 89 LKFNKYCIASNTRKSQLTVHLSLDNCRLFFGNVPKDKTRDDIENELKKFIDGIVKVITYP 148
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQK-MSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
+ + NRGFAF+E+ +HA A +R+K +++ + V WA+P + +Q
Sbjct: 149 ERNAHHFNRGFAFVEFQSHAIAAIARRKLLADGVIRPWGRKLYVDWAEPEPMVDPDVMTQ 208
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LY+KN+P T DRLK + + ++ I + +R Y F+HF ERS A +AL
Sbjct: 209 VKVLYMKNVPTFWTLDRLKTYIS--KTVGEIFI---ERIYKRDNYAFIHFDERSFAERAL 263
Query: 353 K----NTEKYEIDGQVLDCSLAKPQADQK 377
K ++ +G+ ++ A+P K
Sbjct: 264 KIFDSVSQYLSFNGKQIEVEWARPSCYSK 292
>gi|355561882|gb|EHH18514.1| hypothetical protein EGK_15134, partial [Macaca mulatta]
Length = 434
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 103/168 (61%), Gaps = 1/168 (0%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP 282
P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADP 325
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 88/179 (49%), Gaps = 19/179 (10%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+F+G +PR+ ED++ K GP + + L+ DP NRG+AF+ + A+ + +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLTG-LNRGYAFVTFCTKEAAQEAVK 221
Query: 262 KMSNPKFKLDDN-APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK- 319
+N + + + +S A+ R L+V ++PK T++++ E F+ +
Sbjct: 222 LYNNHEIRSGKHIGVCISVANNR------------LFVGSIPKSKTKEQILEEFSKVTEG 269
Query: 320 ITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKN--TEKYEIDGQVLDCSLAKPQAD 375
+T V++ ++++R + F+ + + +A +A + + K ++ G V A P D
Sbjct: 270 LTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIED 328
>gi|350645567|emb|CCD59692.1| apobec-1 complementation factor, putative [Schistosoma mansoni]
Length = 702
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 129/242 (53%), Gaps = 11/242 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L + G++ R+M + G +GY F + +
Sbjct: 61 PPKGCEVFIGKIPRDCFEDELIPIFELAGKIYMFRLMMDFN-GLNRGYGFCLYTNRNDTK 119
Query: 176 QAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
QA+++LN E+ KGK + + RLFIG +P++ +D++ ++K+ GV + +
Sbjct: 120 QAVDQLNGYEIRKGKLLGVCYSIDNCRLFIGGIPKSKTKDEIMLEMSKVTDGVKDVIVYP 179
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ +NRGFAF+EY NH A +R+K+ + L + V WA+P R + + S+V
Sbjct: 180 SLVDKTKNRGFAFVEYENHKTAAMARRKLIPGRIHLWGHQIAVDWAEPERQVDENIMSKV 239
Query: 294 KALYVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+ LYV+NL T++ +K+ F A H + + ++ Y FVHF R A+ A
Sbjct: 240 RILYVRNLMLHTTENAVKDHFNQAIHS------MDAVERVKKIRDYAFVHFHNRIDAITA 293
Query: 352 LK 353
LK
Sbjct: 294 LK 295
>gi|357165062|ref|XP_003580257.1| PREDICTED: uncharacterized protein LOC100827844 [Brachypodium
distachyon]
Length = 783
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 127/244 (52%), Gaps = 5/244 (2%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++GG+ DA++ DLR +GE++EVR+M + + KG+AF+ + T E A +A+ +
Sbjct: 200 EVFVGGLDKDATESDLRKVFSEVGEISEVRLMMNPVTKKNKGFAFLRYATVEQARRAVSD 259
Query: 181 LNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI-GPGVISIELVKDPQNA 239
L + ++GK+ + + LF+GN+ + W ++ ++ + + LV+D N
Sbjct: 260 LKNPLVRGKQCGVAPSHDNDTLFVGNICKTWTKEHLKDKLKSYEVENFDDLILVEDSNNP 319
Query: 240 NQNRGFAFIEYYNH--ACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKAL 296
NRG+A +E+ A + R + + F +D +A VS+AD + +QV+ +
Sbjct: 320 GMNRGYALLEFSTRPEAMDAFRRLQKRDAVFGVDRSA-KVSFADSYPEVDDEMMAQVRTI 378
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
++ LP +DR+K+ +G I KV + P +R +GFV F +A+ +
Sbjct: 379 FLDGLPPSWDEDRVKKYLKKYGAIEKVELARNMPAAKRKDFGFVTFDTHDNAVACVDGIT 438
Query: 357 KYEI 360
EI
Sbjct: 439 SSEI 442
>gi|256077575|ref|XP_002575078.1| apobec-1 complementation factor [Schistosoma mansoni]
Length = 847
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 129/242 (53%), Gaps = 11/242 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L + G++ R+M + G +GY F + +
Sbjct: 61 PPKGCEVFIGKIPRDCFEDELIPIFELAGKIYMFRLMMDFN-GLNRGYGFCLYTNRNDTK 119
Query: 176 QAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
QA+++LN E+ KGK + + RLFIG +P++ +D++ ++K+ GV + +
Sbjct: 120 QAVDQLNGYEIRKGKLLGVCYSIDNCRLFIGGIPKSKTKDEIMLEMSKVTDGVKDVIVYP 179
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ +NRGFAF+EY NH A +R+K+ + L + V WA+P R + + S+V
Sbjct: 180 SLVDKTKNRGFAFVEYENHKTAAMARRKLIPGRIHLWGHQIAVDWAEPERQVDENIMSKV 239
Query: 294 KALYVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+ LYV+NL T++ +K+ F A H + + ++ Y FVHF R A+ A
Sbjct: 240 RILYVRNLMLHTTENAVKDHFNQAIHS------MDAVERVKKIRDYAFVHFHNRIDAITA 293
Query: 352 LK 353
LK
Sbjct: 294 LK 295
>gi|222629297|gb|EEE61429.1| hypothetical protein OsJ_15642 [Oryza sativa Japonica Group]
Length = 730
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 169/339 (49%), Gaps = 24/339 (7%)
Query: 40 DHEEEVEEEVEYEEVEEEEEVEVEEEV-EEEVEEEEETEDVVDGIDAQKHYDGDEEMKVA 98
D++E+ E+ E + + +E VE E+V EEE + +E D D + + + + +EE V
Sbjct: 57 DYDEKDLEQYEEQYEDGDEVVEYTEDVIEEETDMVDEELDGGDDGEGEGYENAEEEHNV- 115
Query: 99 ESDKDDEKKKHAELLA--LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKD 156
D E ++H E++ EV++GG+ DA++ DLR +GE+TEVR+M
Sbjct: 116 ----DVEDEEHHEMVKEHRKRKEFEVFVGGLDKDATESDLRKVFGEVGEITEVRLMMNPV 171
Query: 157 SGEAKGYAFVTFRTKELASQAIEELNS-----------CELKGKKIKCSAAQAKHRLFIG 205
+ + KG+AF+ + T E A +A+ EL + ++GK+ + + LF+G
Sbjct: 172 TKKNKGFAFLRYATVEQARRAVSELKNPSVGLKIWIFYIMVRGKQCGVAPSHDNDTLFVG 231
Query: 206 NVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQNANQNRGFAFIEYYNH--ACAEYSRQK 262
N+ + W ++ +++ + G + LV+D N NRG+A +E+ A + R +
Sbjct: 232 NICKTWTKEHLKEKLKSYGVENFDDLLLVEDSNNPGMNRGYALLEFSTRPEAMDAFRRLQ 291
Query: 263 MSNPKFKLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 321
+ F +D +A VS+AD + +QV+ +++ LP +DR+K+ +G I
Sbjct: 292 KRDVVFGVDRSA-KVSFADSYPEVDDEIMAQVRTVFIDGLPPSWDEDRVKKYLKKYGAIE 350
Query: 322 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEI 360
KV + P +R +GFV F +A+ EI
Sbjct: 351 KVELARNMPAAKRKDFGFVTFDTHDNAVACADGITNSEI 389
>gi|332834232|ref|XP_001162562.2| PREDICTED: APOBEC1 complementation factor isoform 3 [Pan
troglodytes]
Length = 502
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 18/223 (8%)
Query: 157 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 215
+G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 8 NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 67
Query: 216 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 275
+ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L +
Sbjct: 68 ILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGI 127
Query: 276 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-E 333
V WA+P + S VK LYV+NL +++ +++ F + KPG E
Sbjct: 128 AVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVE 176
Query: 334 RSR----YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372
R + Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 177 RVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 219
>gi|449497953|ref|XP_004174289.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein Q [Taeniopygia guttata]
Length = 492
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 127/227 (55%), Gaps = 18/227 (7%)
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
+ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L P +
Sbjct: 84 DYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDD 143
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++VK L+
Sbjct: 144 KKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKVKVLF 203
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357
V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++
Sbjct: 204 VRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNG 255
Query: 358 YEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY-------PPHL 397
+++G+ ++ AKP DQK +++A N Y PPH+
Sbjct: 256 KDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 301
>gi|91077966|ref|XP_967803.1| PREDICTED: similar to APOBEC1 complementation factor [Tribolium
castaneum]
Length = 363
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 140/289 (48%), Gaps = 17/289 (5%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
GSE+++G IP D +D+L + + + R+M +G +G+AFVT+ A +A+
Sbjct: 30 GSEIFVGNIPRDLFEDELIPLFSQVAPIYKFRLMMDF-TGNTRGFAFVTYYNVWDAQKAV 88
Query: 179 EELN----SCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+ N + + ++ + RLF GNVP++ DD+ + K G++ +
Sbjct: 89 LKFNKYCIASNTRKSQLTVHLSLDNCRLFFGNVPKDKTRDDIENELKKFIDGIVKVITYP 148
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQK-MSNPKFKLDDNAPTVSWADPR-NAESSAASQ 292
+ + NRGFAF+E+ +HA A +R+K +++ + V WA+P + +Q
Sbjct: 149 ERNAHHFNRGFAFVEFQSHAIAAIARRKLLADGVIRPWGRKLYVDWAEPEPMVDPDVMTQ 208
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
VK LY+KN+P T DRLK + + ++ I +R Y F+HF ERS A +AL
Sbjct: 209 VKVLYMKNVPTFWTLDRLKTYIS--KTVGEIFIERI---YKRDNYAFIHFDERSFAERAL 263
Query: 353 K----NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHL 397
K ++ +G+ ++ A+P K N + PP L
Sbjct: 264 KIFDSVSQYLSFNGKQIEVEWARPSCYSK-KNRINEVPDNFCTSVPPRL 311
>gi|323650030|gb|ADX97101.1| APOBEC1 complementation factor [Perca flavescens]
Length = 450
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 120/220 (54%), Gaps = 12/220 (5%)
Query: 157 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 215
+G +GYAFVTF K A A+++LN+ E++ G+ + A+ RLF+G +P+ ++
Sbjct: 2 NGNNRGYAFVTFGNKLEAKAAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREE 61
Query: 216 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 275
+ + K+ GV+ + + + ++NRGFAF+EY +H A +R+K+ + +L +A
Sbjct: 62 ILTEMRKVTDGVVDVIVYPSAADKSKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHAI 121
Query: 276 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKPGQ 332
V WA+P + + VK LYV+NL T++ +++ F G + +V +
Sbjct: 122 AVDWAEPEVEVDEDTMASVKILYVRNLMLQTTEETIEKEFNSLRPGAVERV--------K 173
Query: 333 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372
+ Y FVHF +R A+ A+ +DG ++ +LAKP
Sbjct: 174 KIRDYAFVHFTQREDAINAMNALNGKVVDGSPIEVTLAKP 213
>gi|313216719|emb|CBY37974.1| unnamed protein product [Oikopleura dioica]
Length = 580
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 140/275 (50%), Gaps = 36/275 (13%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVT--EVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
E ++G + DA + D+ + + E T E+R+M G D G+++G+AFV+F A +
Sbjct: 211 ECFIGSLHRDAFEPDIWTLLEEVPEATVYEIRLMMGYD-GKSRGFAFVSFVEDGAAQRCK 269
Query: 179 EELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ- 237
L++ + KK+ + + R+FIG++P++ + + +T G +S +V Q
Sbjct: 270 ALLDTKQFMEKKLHVNVSIPATRIFIGSIPKDKSKQQFEEELTNNG---VSTWVVNQSQK 326
Query: 238 -NANQNRGFAFIEYYNHACA---------------EYSRQKMSNPKFKLDDN-APTVSWA 280
N NRGFAF+E+ +H A E ++ + N L V WA
Sbjct: 327 DNGASNRGFAFVEFESHMDASTVKVQSFNKLHLFYECFKKNLLNRSLALFGRYYQNVDWA 386
Query: 281 DPRNA-ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
DP N + + S VK LYVK + T++ +K LF +G + KV ++ + + F
Sbjct: 387 DPENTPDDNVMSTVKNLYVKGWSEARTEEEIKALFEPYGVVEKV--------KKINNFSF 438
Query: 340 VHFAERSSAMKALK--NTEKYEIDGQVLDCSLAKP 372
VHF ER SA+KA++ N + + D +V+D SLAKP
Sbjct: 439 VHFVERDSALKAIEAMNGKNFGND-EVIDVSLAKP 472
>gi|149024313|gb|EDL80810.1| heterogeneous nuclear ribonucleoprotein R, isoform CRA_a [Rattus
norvegicus]
Length = 447
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 105/175 (60%), Gaps = 10/175 (5%)
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
E +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 166 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 225
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+
Sbjct: 226 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLF 285
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 286 VRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 332
>gi|348580335|ref|XP_003475934.1| PREDICTED: probable RNA-binding protein 46-like [Cavia porcellus]
Length = 436
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 126/261 (48%), Gaps = 53/261 (20%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
EV++G IP D +D+L + G++ E R+M + SGE +GYAFVT+ TKE A AI
Sbjct: 61 CEVFVGKIPRDMYEDELVF--ERAGKIHEFRLMM-EFSGENRGYAFVTYTTKEEAQLAIR 117
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 118 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEIKKVTEGVVDVIVYPSATD 177
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYV 298
+NRGFAF++Y +H +AA +VK L+V
Sbjct: 178 KTKNRGFAFVKYESH---------------------------------RAAAMRVKVLFV 204
Query: 299 KNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKALK 353
+NL T++ +K F KPG ER + Y FVHF R A+ A+
Sbjct: 205 RNLMISTTEETIKAEFNKF-----------KPGAVERVKKLRDYAFVHFFNREDAVAAMS 253
Query: 354 NTEKYEIDGQVLDCSLAKPQA 374
IDG ++ +LAKP +
Sbjct: 254 VISGKCIDGASIEVTLAKPHS 274
>gi|194386954|dbj|BAG59843.1| unnamed protein product [Homo sapiens]
Length = 473
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 105/175 (60%), Gaps = 10/175 (5%)
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
E +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 65 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVAEGLVDVILYHQPDD 124
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+
Sbjct: 125 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLF 184
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 185 VRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 231
>gi|148697994|gb|EDL29941.1| heterogeneous nuclear ribonucleoprotein R [Mus musculus]
Length = 607
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 105/175 (60%), Gaps = 10/175 (5%)
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
E +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 200 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 259
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+
Sbjct: 260 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLF 319
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 320 VRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 366
>gi|397478947|ref|XP_003810795.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4 [Pan
paniscus]
Length = 557
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 116/195 (59%), Gaps = 10/195 (5%)
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
E +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 149 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 208
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+
Sbjct: 209 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLF 268
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357
V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 269 VRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNG 320
Query: 358 YEIDGQVLDCSLAKP 372
EI+G+ ++ LAKP
Sbjct: 321 KEIEGEEIEIVLAKP 335
>gi|73950230|ref|XP_866516.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Canis lupus familiaris]
gi|297282473|ref|XP_002802272.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform 4
[Macaca mulatta]
gi|332244976|ref|XP_003271639.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Nomascus leucogenys]
gi|332807935|ref|XP_003307913.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3 [Pan
troglodytes]
gi|402853340|ref|XP_003891354.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 4
[Papio anubis]
Length = 473
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 105/175 (60%), Gaps = 10/175 (5%)
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
E +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 65 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 124
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+
Sbjct: 125 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLF 184
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 185 VRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 231
>gi|338722117|ref|XP_003364487.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Equus caballus]
Length = 473
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 105/175 (60%), Gaps = 10/175 (5%)
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
E +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 65 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 124
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+
Sbjct: 125 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLF 184
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 185 VRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 231
>gi|296207004|ref|XP_002750459.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform 3
[Callithrix jacchus]
Length = 473
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 105/175 (60%), Gaps = 10/175 (5%)
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
E +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 65 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 124
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+
Sbjct: 125 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLF 184
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 185 VRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 231
>gi|351698414|gb|EHB01333.1| Heterogeneous nuclear ribonucleoprotein R [Heterocephalus glaber]
Length = 402
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 110/184 (59%), Gaps = 10/184 (5%)
Query: 171 KELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
KE A +A++ +S E+ GK + + A +RLF+G++P+N ++++ + +K+ G++
Sbjct: 20 KEAAQEAVKLCDSYEICPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVD 79
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESS 288
+ L P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP +
Sbjct: 80 VILYHQPDDKKKNRGFRFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPE 139
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
++VK L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A
Sbjct: 140 VMAKVKVLFVRNLVTRVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAA 191
Query: 349 MKAL 352
+KA+
Sbjct: 192 VKAM 195
>gi|417410478|gb|JAA51712.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 409
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 105/175 (60%), Gaps = 10/175 (5%)
Query: 180 ELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
+ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P +
Sbjct: 1 QCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 60
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALY 297
+NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+
Sbjct: 61 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLF 120
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+
Sbjct: 121 VRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAM 167
>gi|357507979|ref|XP_003624278.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499293|gb|AES80496.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 822
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 126/237 (53%), Gaps = 7/237 (2%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++GG+ +A++ DLR +GE+TEVR+ + KG+A + F T E +A+ E
Sbjct: 195 EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAE 254
Query: 181 LNSCELKGKK--IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQ 237
L + + GK+ I + Q L++ N+ ++W ++ +++ + G + L++D
Sbjct: 255 LKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHYGVESFKDLTLLEDDN 314
Query: 238 NANQNRGFAFIEYYNHACAE--YSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVK 294
N N G AF+E+ +H+ ++ Y R + ++ F +D A VS+A+ + +QVK
Sbjct: 315 NEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVDKPA-EVSFANSFIDLGDDIMAQVK 373
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+++ LP +D ++ L +G + KV + PG R YGFV F ++A++
Sbjct: 374 TVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAVEC 430
>gi|124359488|gb|ABN05926.1| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 824
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 126/237 (53%), Gaps = 7/237 (2%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++GG+ +A++ DLR +GE+TEVR+ + KG+A + F T E +A+ E
Sbjct: 195 EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAE 254
Query: 181 LNSCELKGKK--IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQ 237
L + + GK+ I + Q L++ N+ ++W ++ +++ + G + L++D
Sbjct: 255 LKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHYGVESFKDLTLLEDDN 314
Query: 238 NANQNRGFAFIEYYNHACAE--YSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVK 294
N N G AF+E+ +H+ ++ Y R + ++ F +D A VS+A+ + +QVK
Sbjct: 315 NEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVDKPA-EVSFANSFIDLGDDIMAQVK 373
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+++ LP +D ++ L +G + KV + PG R YGFV F ++A++
Sbjct: 374 TVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAVEC 430
>gi|357507983|ref|XP_003624280.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499295|gb|AES80498.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 729
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 126/237 (53%), Gaps = 7/237 (2%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++GG+ +A++ DLR +GE+TEVR+ + KG+A + F T E +A+ E
Sbjct: 195 EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAE 254
Query: 181 LNSCELKGKK--IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQ 237
L + + GK+ I + Q L++ N+ ++W ++ +++ + G + L++D
Sbjct: 255 LKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHYGVESFKDLTLLEDDN 314
Query: 238 NANQNRGFAFIEYYNHACAE--YSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVK 294
N N G AF+E+ +H+ ++ Y R + ++ F +D A VS+A+ + +QVK
Sbjct: 315 NEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVDKPA-EVSFANSFIDLGDDIMAQVK 373
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+++ LP +D ++ L +G + KV + PG R YGFV F ++A++
Sbjct: 374 TVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAVEC 430
>gi|256078322|ref|XP_002575445.1| apobec-1 complementation factor-related [Schistosoma mansoni]
gi|350644243|emb|CCD61005.1| apobec-1 complementation factor-related [Schistosoma mansoni]
Length = 771
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 128/260 (49%), Gaps = 29/260 (11%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP G EV++G IP D +D+L + IG + R+M + +G +G+ F + +E
Sbjct: 100 PPRGCEVFIGKIPRDCFEDELIPVFEQIGPIYMFRLMM-ELNGINRGFGFCVYTNREDTK 158
Query: 176 QAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
+A++ELN + + ++ Q++ + +M++ VT VIS V D
Sbjct: 159 RAVQELNIMKFEKER------QSEEEIL----------SEMKR-VTDGVKDVISYPSVTD 201
Query: 236 PQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVK 294
+NRGFAFIEY +H A +R+K+ L + V WA+P R S+VK
Sbjct: 202 ---KTKNRGFAFIEYGSHKAAAMARRKLLPGHIHLWGHQIAVDWAEPEREVNEDIMSKVK 258
Query: 295 ALYVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
LYV+NL T++ L++ F A G V + ++ S Y F+HF ER A++ L
Sbjct: 259 ILYVRNLMLSTTEESLRDSFIKAAGGDPNSV-----ERVKKISDYAFIHFREREQALQCL 313
Query: 353 KNTEKYEIDGQVLDCSLAKP 372
IDG ++ + AKP
Sbjct: 314 HTLNDTYIDGSKIEVTWAKP 333
>gi|357507981|ref|XP_003624279.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
gi|355499294|gb|AES80497.1| Heterogeneous nuclear ribonucleoprotein Q [Medicago truncatula]
Length = 514
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 126/237 (53%), Gaps = 7/237 (2%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
EV++GG+ +A++ DLR +GE+TEVR+ + KG+A + F T E +A+ E
Sbjct: 195 EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAE 254
Query: 181 LNSCELKGKK--IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDPQ 237
L + + GK+ I + Q L++ N+ ++W ++ +++ + G + L++D
Sbjct: 255 LKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHYGVESFKDLTLLEDDN 314
Query: 238 NANQNRGFAFIEYYNHACAE--YSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVK 294
N N G AF+E+ +H+ ++ Y R + ++ F +D A VS+A+ + +QVK
Sbjct: 315 NEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVDKPAE-VSFANSFIDLGDDIMAQVK 373
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+++ LP +D ++ L +G + KV + PG R YGFV F ++A++
Sbjct: 374 TVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAVEC 430
>gi|242047592|ref|XP_002461542.1| hypothetical protein SORBIDRAFT_02g004470 [Sorghum bicolor]
gi|241924919|gb|EER98063.1| hypothetical protein SORBIDRAFT_02g004470 [Sorghum bicolor]
Length = 551
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 122/245 (49%), Gaps = 3/245 (1%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+EV++ G+ ++D+R GE+T+VR+ + ++KGY FV +R A + +
Sbjct: 267 TEVFVCGLDGSMKEEDVRSVFGWAGEITQVRMAMDARTWKSKGYCFVRYREPSQAKKVVA 326
Query: 180 ELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGP-GVISIELVKDPQN 238
E ++ K + A ++ + N+ + W ++D+ K + K G + + L+ D N
Sbjct: 327 EFCKWKICWKLCQVEAVDGNDKIVLENIDKKWKKEDIMKLLHKTGVENIDKVTLMADCDN 386
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNP-KFKLDDNAPTVSWADPRNAESSAASQVKALY 297
N G+AF+E A + K+S F+ N TV+WA + QVK+++
Sbjct: 387 PGYNCGYAFLELETERDAWMAYIKLSRKGVFRRCLNI-TVAWAKAMSDRDEEMQQVKSIF 445
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357
V+ +P+ +L E+F+ +G I + V+ +RS + FVH+ +A+ L+ +K
Sbjct: 446 VEGIPESWDNLKLTEIFSKYGVIQRTVLSHDIQSAKRSDFAFVHYTTHEAAILCLELFDK 505
Query: 358 YEIDG 362
E+ G
Sbjct: 506 EELTG 510
>gi|307210260|gb|EFN86910.1| APOBEC1 complementation factor [Harpegnathos saltator]
Length = 419
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 111/219 (50%), Gaps = 11/219 (5%)
Query: 143 IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHR 201
+G + E+R+M SG +GYAF + +A +A L+ E++ G +I + R
Sbjct: 7 VGRLLELRLMLD-FSGSTRGYAFALYEEPRIARRACSVLDGHEIRPGHRIGVVKSMDNCR 65
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
LF G VP++ +++ +TKI G+I + L + NRGF F+E+ +H A +R+
Sbjct: 66 LFFGGVPKSKTKEEFLSELTKILDGIIDVYLYPSAHDRTLNRGFIFVEFKDHRAAAMARR 125
Query: 262 KMSNPKFKLDDNAPTVSWADPR---NAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 318
K+ K L D+ V WADP + V AL+V+NL +++Q +++E+F H
Sbjct: 126 KLIPGKVMLWDHEIAVDWADPEPGDPVDEDIMETVTALFVRNLTLEMSQQKVREVFHRHT 185
Query: 319 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357
+ P ++ + + F+H+ R +A + +K
Sbjct: 186 NV------PILKLKKINHFAFIHYENRGAAQAVMDIMQK 218
>gi|324501089|gb|ADY40490.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 418
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 109/192 (56%), Gaps = 11/192 (5%)
Query: 189 KKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ--NANQNRGFA 246
K +K + + A RLFIGN+P++ ++++ + GV + P + +NRGF
Sbjct: 9 KNLKVNVSVANTRLFIGNIPKSKSKEEILAEFKEHTEGVTDCIIYSSPDAGESRKNRGFC 68
Query: 247 FIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQVKALYVKNLPKDI 305
F+++ +H A +++K+ K + + V WA+ + + ++VK LYV+NL + +
Sbjct: 69 FLDFCDHKSASDAKRKIHAGKLRAWNLDLVVDWAEQQEEPDEETMAKVKVLYVRNLKEAV 128
Query: 306 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
T+++LKE+F+ HG++ V ++ Y F+HF ER A+KA++ ++G +
Sbjct: 129 TEEQLKEMFSAHGEVDHV--------KKIKDYAFIHFNEREPAVKAMEALNGTVLEGVPI 180
Query: 366 DCSLAKPQADQK 377
+ SLAKPQ+D+K
Sbjct: 181 EISLAKPQSDKK 192
>gi|34395354|dbj|BAC84424.1| water-stress protein-like protein [Oryza sativa Japonica Group]
Length = 465
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 141/297 (47%), Gaps = 18/297 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG-KDSGEAKGYAFVTFRTKELASQAI 178
EV +GG+P DA+++D+ G+V EVR+++ D KG+AFV F A A
Sbjct: 90 CEVLVGGLPRDAAEEDVARALADAGDVEEVRLVRDPADPRSNKGFAFVRFAAAWQARWAA 149
Query: 179 EELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV-TKIGPGVISIELVKDPQ 237
+++ + +KG+ A L + N+ +W +DD+ + + T + I LV+DP+
Sbjct: 150 DDVRTAMVKGEACMICKNDANETLHLRNICFDWTKDDLAEELKTYKLENLEDINLVEDPE 209
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL-DDNAPTVSWADPRNAESSAASQVKAL 296
+NRG+AF+++ + + K+ N L D VS++ + + +VK++
Sbjct: 210 RKGKNRGYAFLDFRTNVDGVDAFFKLQNRDIYLGTDVRAQVSFSKTLSLDDKIMEKVKSV 269
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
++ LP +D+++E+F G+I + + +R +GF+ F R SA+ +
Sbjct: 270 FLDGLPPHWDEDKVREVFGKFGEIDSIHLARNMFKAKRKDFGFIGFTSRQSALDCISTVS 329
Query: 357 K---YEIDGQV-LDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGY--GMVGGAYG 407
K E G+V + SL +P+ K P LG G +G +YG
Sbjct: 330 KGGIVEGSGKVRIKASLQRPRPTLKKHSWQG---------ITPMLGIRRGFIGKSYG 377
>gi|222636973|gb|EEE67105.1| hypothetical protein OsJ_24114 [Oryza sativa Japonica Group]
Length = 624
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 141/296 (47%), Gaps = 18/296 (6%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG-KDSGEAKGYAFVTFRTKELASQAIE 179
EV +GG+P DA+++D+ G+V EVR+++ D KG+AFV F A A +
Sbjct: 91 EVLVGGLPRDAAEEDVARALADAGDVEEVRLVRDPADPRSNKGFAFVRFAAAWQARWAAD 150
Query: 180 ELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAV-TKIGPGVISIELVKDPQN 238
++ + +KG+ A L + N+ +W +DD+ + + T + I LV+DP+
Sbjct: 151 DVRTAMVKGEACMICKNDANETLHLRNICFDWTKDDLAEELKTYKLENLEDINLVEDPER 210
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL-DDNAPTVSWADPRNAESSAASQVKALY 297
+NRG+AF+++ + + K+ N L D VS++ + + +VK+++
Sbjct: 211 KGKNRGYAFLDFRTNVDGVDAFFKLQNRDIYLGTDVRAQVSFSKTLSLDDKIMEKVKSVF 270
Query: 298 VKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK 357
+ LP +D+++E+F G+I + + +R +GF+ F R SA+ + K
Sbjct: 271 LDGLPPHWDEDKVREVFGKFGEIDSIHLARNMFKAKRKDFGFIGFTSRQSALDCISTVSK 330
Query: 358 ---YEIDGQV-LDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGY--GMVGGAYG 407
E G+V + SL +P+ K P LG G +G +YG
Sbjct: 331 GGIVEGSGKVRIKASLQRPRPTLKKHSWQG---------ITPMLGIRRGFIGKSYG 377
>gi|426231613|ref|XP_004009833.1| PREDICTED: RNA-binding protein 47 [Ovis aries]
Length = 546
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 119/257 (46%), Gaps = 56/257 (21%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G EV++G IP D +D+L +++G + G G
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFEAVG-------LLGVGCG-------------------- 102
Query: 179 EELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
+++C RLFIG +P+ +++ + + K+ GV+ + + +
Sbjct: 103 --VDTC----------------RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAAD 144
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKALY 297
+NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK LY
Sbjct: 145 KMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILY 204
Query: 298 VKNLPKDITQDRLKELFAHH--GKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
V+NL + T+D +K+ F G + +V ++ Y FVHFA R A+ A+ N
Sbjct: 205 VRNLMIETTEDTIKKSFGQFNPGCVERV--------KKIRDYAFVHFASREDAVHAMNNL 256
Query: 356 EKYEIDGQVLDCSLAKP 372
E++G L+ +LAKP
Sbjct: 257 NGTELEGSCLEVTLAKP 273
>gi|440800287|gb|ELR21326.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 500
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 124/258 (48%), Gaps = 18/258 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP +++ I +D +L+ S G+VT+ ++K K +GE KG+ FV F T +
Sbjct: 49 PPLEYGIFVSDIARGVTDQELKDAFSSAGQVTDALVVKNKFTGETKGFGFVKFATLDAVH 108
Query: 176 QAIEEL------NSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
A++ ++ + + +K A K+ L++GN+PR EDD+R A+ + +
Sbjct: 109 AALDMAVLPSFRDAVSARVQTVKVVRADPKNVLYVGNIPRGLSEDDVRLALQE---ATTT 165
Query: 230 IELVKDPQNAN---QNRGFAFIEYYNHACA-EYSRQKMSNPKFKLDDNAPTVSWADPRNA 285
E+ K +++G+ + + +H CA + R S P F L N V A+PR
Sbjct: 166 YEVTKFKLCTTLEGESKGYGWATFKDHKCAVQGMRLLQSTPVFGLYLN---VHMAEPRTQ 222
Query: 286 ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAER 345
E ++VK+L+V+ + + +K F KVVIP + + FVHFA R
Sbjct: 223 EEDMLARVKSLFVRGVSPTTNAEAMKAFFGD--GCEKVVIPLDVTTRAVLGHAFVHFATR 280
Query: 346 SSAMKALKNTEKYEIDGQ 363
A A++ + ++G+
Sbjct: 281 QQAEAAMQRCQNATLEGE 298
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/184 (19%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+F+ ++ R + +++ A + G ++ LV + + +GF F+++ +
Sbjct: 55 IFVSDIARGVTDQELKDAFSSAGQ--VTDALVVKNKFTGETKGFGFVKFATLDAVHAALD 112
Query: 262 KMSNPKFKLDDNAPT----VSWADPRNAESSAASQVKALYVKNLPKDITQD----RLKEL 313
P F+ +A V ADP+N LYV N+P+ +++D L+E
Sbjct: 113 MAVLPSFRDAVSARVQTVKVVRADPKNV----------LYVGNIPRGLSEDDVRLALQEA 162
Query: 314 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373
+ ++TK + G+ + YG+ F + A++ ++ + + G L+ +A+P+
Sbjct: 163 TTTY-EVTKFKLCTTLEGESKG-YGWATFKDHKCAVQGMRLLQSTPVFGLYLNVHMAEPR 220
Query: 374 ADQK 377
++
Sbjct: 221 TQEE 224
>gi|313233215|emb|CBY24330.1| unnamed protein product [Oikopleura dioica]
Length = 254
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 106/187 (56%), Gaps = 2/187 (1%)
Query: 97 VAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKD 156
V + + K + L P G+E+++G +P D +D+L +S G V E+R+M +
Sbjct: 53 VMKQENGQRKYTNPALTGKPEKGTEIFIGKLPRDLFEDELYPVLESYGPVFELRMMLDFN 112
Query: 157 SGEAKGYAFVTFRTKELASQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDD 215
G +G+ FVT++T+ + A++ +N+ E+ KG+ + + RLF+G +P++ D+
Sbjct: 113 -GNNRGFCFVTYQTRNESQAALKGINNFEIRKGRLLGACQSVDNCRLFVGGIPKSKKRDE 171
Query: 216 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 275
+ + + K+ GV+ + + + ++NRGF+F+EY +H A +R+K+ + +L +
Sbjct: 172 IMEEMKKVTEGVVDVIVYPSAADKSKNRGFSFVEYKDHKAAAMARRKLMPGRIQLWGHQI 231
Query: 276 TVSWADP 282
V WA+P
Sbjct: 232 AVDWAEP 238
>gi|170057401|ref|XP_001864467.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876865|gb|EDS40248.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 741
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 129/259 (49%), Gaps = 8/259 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P +G EVY IP + ++ +L + G + E+R+M ++ + + Y FV + +E A
Sbjct: 109 PGYGCEVYAKRIPANFTEVNLVPIFERCGRLYEIRLMMDYNN-QNRRYCFVRYTNEEDAR 167
Query: 176 QAIEELNSCELKGKK-IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AIE LN ++G + I+ + K RLF+ N+P+ + + + P + + +
Sbjct: 168 LAIELLNHHFVRGNQTIEVQKSFEKCRLFVANLPKELDRKTIEVSFRSLFPEMTRLVMHN 227
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-ESSAASQV 293
+ NRGFAF+++ +H A ++++ + ++ D + WA+P+ A + S A +V
Sbjct: 228 RIADGTTNRGFAFMDFPDHGSALRAKKQTTPGCLRMWDRDIKIVWANPQRALDHSNADEV 287
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K L+V+N+ ++ L LF+ +V K + R + FV F R A A+
Sbjct: 288 KTLFVRNVDLQVSTKELYMLFSRVVDRQDIV----KISRVRE-FAFVEFTRRFHAAFAMH 342
Query: 354 NTEKYEIDGQVLDCSLAKP 372
+ ++++G LD A P
Sbjct: 343 AVQGFQLNGYTLDIEWAMP 361
>gi|357603823|gb|EHJ63934.1| hypothetical protein KGM_17340 [Danaus plexippus]
Length = 438
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 127/245 (51%), Gaps = 17/245 (6%)
Query: 157 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKK-IKCSAAQAKHRLFIGNVPRNWGEDD 215
SG +GYAFV + + A+ A+++LN E++ ++ I + RLF+GN+P+ ++D
Sbjct: 8 SGSNRGYAFVMYTERAEATAAVKQLNGYEIRPRRHIGVVKSVDNCRLFVGNIPKTKTKED 67
Query: 216 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 275
+R+ ++K ++ + L K+ + NRGFAF+E+ H A +R+ + +L D
Sbjct: 68 VREELSKRVSDIVDVILYKNCFDRKLNRGFAFVEFTCHRAAAMARRALVPGCVRLWDQEV 127
Query: 276 TVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELF--AHHGKITKVVIPPAKPGQ 332
V WA+P + + +VK LYV+N T D ++++F + K+ +V +
Sbjct: 128 MVDWAEPEPDIDDEQMQRVKVLYVRNFEIRTTPDVIQKVFESTINHKVERV--------K 179
Query: 333 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP-----QADQKTSGGSNSQKS 387
+ Y F+HF ER A A+ + +IDG ++ AKP QK S G+ +
Sbjct: 180 KIYDYAFIHFYEREHAELAIAKLQNADIDGSNIEIRWAKPVDRDLYRIQKLSRGNAKFNN 239
Query: 388 ALNPT 392
+L+ T
Sbjct: 240 SLDLT 244
>gi|424513446|emb|CCO66068.1| RNA recognition motif family protein, expressed [Bathycoccus
prasinos]
Length = 557
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 109/439 (24%), Positives = 176/439 (40%), Gaps = 109/439 (24%)
Query: 113 LALPPHGSEVYLGGIPHDASDDDLRHF------------CKSIGEVTEVRIMKG-KDSGE 159
L P HGSE++LGG+P ASD D+ + K + +++++K DS
Sbjct: 86 LGHPQHGSELFLGGVPKSASDQDVENLFKGSTKGRGKGNTKCPSQPVDIQVVKDPNDSMR 145
Query: 160 AKGYAFVTFRTKELASQAIEEL------NSCELKG------KKIKCSAAQAKHRLFIGNV 207
+GYAF F + A + L N+ + KKI+ + KH LF+
Sbjct: 146 NRGYAFARFGNRGECEDAFQFLSENDGANAVMIDAENNNEEKKIRATIKPTKHVLFMSGF 205
Query: 208 PRNWGEDDMRKAVTKIGPGVISIELVKDPQN--------ANQNRGFAFIEYYNHACAEYS 259
P +D+ + ++G IE V P+ A +++G+ FI+Y+N CAE +
Sbjct: 206 PPFATREDIVTELLRVGGA--GIETVSLPRASGTGTNGIACRHKGYGFIDYFNQECAERA 263
Query: 260 RQKMSNPK---FKLDDNAPTVS-WADPRN----AESSAASQVKALYVKNLP--------K 303
+ +++ F + N P V+ WAD ++ +Q K++YV +P K
Sbjct: 264 MKNINDKTTRMFNGNANKPVVAKWADVSKEKPPSKEDLLAQSKSVYVGQIPTEGVALDEK 323
Query: 304 DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS----------------- 346
D+ + +L+E+F G++ V +P G Y FVHF ERS
Sbjct: 324 DL-EGKLREVFGQFGEVESVKLP---RGDATKGYAFVHFTERSSAEKAVEAAAASASGAR 379
Query: 347 ---SAMKALKNTEKYEIDGQVLDCSLAKPQADQKT----------SGGSNSQKSALNPTY 393
SAM + ++ G L +A+P+ ++ G
Sbjct: 380 GDESAMDGVVAAGAVQLQGCNLTVEIARPERERNNEHRDKGGPRGGRGGRRPMHRGGRGE 439
Query: 394 PPHLGYGMVGGAYGAL----GAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVL 449
PP GG Y G G P F GG +M P+ LP+G+ YV+
Sbjct: 440 PPG---SRRGGDYNNYMSPHGGGIAPRQFG-----------GGNSMTPVYLPNGQTAYVM 485
Query: 450 QQPGVQQHNPPPQPRSGRG 468
Q + P P +G G
Sbjct: 486 GQGNM------PAPNAGWG 498
>gi|357614246|gb|EHJ68984.1| hypothetical protein KGM_20249 [Danaus plexippus]
Length = 260
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 90/156 (57%), Gaps = 9/156 (5%)
Query: 223 IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP 282
+ G++ + + P + +NRGF F+EY +H A +++++ + K+ V WADP
Sbjct: 10 LTAGLVEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADP 69
Query: 283 R-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
+ + S+VK LYV+NL ++IT++ LKE F +G + +V ++ Y FVH
Sbjct: 70 QEEPDEQTMSKVKVLYVRNLTQEITEEALKEEFERYGNVERV--------KKIKDYAFVH 121
Query: 342 FAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
F +R A+KA++ + E+ G L+ SLAKP +D+K
Sbjct: 122 FEDRDCAVKAMQEIDGKELGGARLEVSLAKPPSDKK 157
>gi|157123628|ref|XP_001660235.1| hypothetical protein AaeL_AAEL009575 [Aedes aegypti]
gi|108874325|gb|EAT38550.1| AAEL009575-PA [Aedes aegypti]
Length = 358
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 125/265 (47%), Gaps = 20/265 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+Y+ IP + ++ DL + G++ E+R+M S + + Y FV + +E A
Sbjct: 103 PGFGCEIYVKRIPPEFTEADLVPVFERFGKLYEMRLMMDY-SNQNRRYCFVRYTNEEDAK 161
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AIE LN ++ + ++ + K RLF+GN+P++ + A + P + +
Sbjct: 162 VAIEVLNHHFVRDNQTLEAQRSFEKCRLFVGNLPKDLDRKTIEIAFRSLFPEMTRFVMHN 221
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ NRGFAF+++ +HA A ++++ + ++ D + WA+P R+ + S +V
Sbjct: 222 RISDGEMNRGFAFMDFPDHAAALRAKKQTTPGCMRMWDREIKIVWANPQRSLDHSGVDEV 281
Query: 294 KALYVKNLPKDITQDRLKELFAHHG------KITKVVIPPAKPGQERSRYGFVHFAERSS 347
K L+V+N+ + L LF KIT+V + FV FA+R
Sbjct: 282 KMLFVRNIDLKVGTSELYNLFVRLVPRQDIIKITRV-----------REFAFVEFAKREQ 330
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKP 372
A + + Y + LD A P
Sbjct: 331 AEMVMHAVQGYVLTQYPLDIEWAMP 355
>gi|157108822|ref|XP_001650402.1| hypothetical protein AaeL_AAEL015050 [Aedes aegypti]
gi|108868501|gb|EAT32726.1| AAEL015050-PA [Aedes aegypti]
Length = 396
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 125/265 (47%), Gaps = 20/265 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+Y+ IP + ++ DL + G++ E+R+M S + + Y FV + +E A
Sbjct: 103 PGFGCEIYVKRIPPEFTEADLVPVFERFGKLYEMRLMMDY-SNQNRRYCFVRYTNEEDAK 161
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AIE LN ++ + ++ + K RLF+GN+P++ + A + P + +
Sbjct: 162 VAIEVLNHHFVRDNQTLEAQRSFEKCRLFVGNLPKDLDRKTIEIAFRSLFPEMTRFVMHN 221
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQV 293
+ NRGFAF+++ +HA A ++++ + ++ D + WA+P R+ + S +V
Sbjct: 222 RISDGEMNRGFAFMDFPDHAAALRAKKQTTPGCMRMWDREIKIVWANPQRSLDHSGVDEV 281
Query: 294 KALYVKNLPKDITQDRLKELFAHHG------KITKVVIPPAKPGQERSRYGFVHFAERSS 347
K L+V+N+ + L LF KIT+V + FV FA+R
Sbjct: 282 KMLFVRNIDLKVGTSELYNLFVRLVPRQDIIKITRV-----------REFAFVEFAKREQ 330
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKP 372
A + + Y + LD A P
Sbjct: 331 AEMVMHAVQGYVLTQYPLDIEWAMP 355
>gi|297611571|ref|NP_001067623.2| Os11g0250000 [Oryza sativa Japonica Group]
gi|255679961|dbj|BAF27986.2| Os11g0250000 [Oryza sativa Japonica Group]
Length = 94
Score = 101 bits (251), Expect = 9e-19, Method: Composition-based stats.
Identities = 44/74 (59%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
QVK +YVKNLP++ +++++KE+F HG++TKVV+PPAK G +R +GFVHFAERSSA+KA
Sbjct: 6 QVKTIYVKNLPENASKEKIKEIFEKHGEVTKVVLPPAKDGHKRD-FGFVHFAERSSALKA 64
Query: 352 LKNTEKYEIDGQVL 365
+K +EKYE +G V
Sbjct: 65 VKGSEKYEFNGNVF 78
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 129/262 (49%), Gaps = 16/262 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+G + SD L+ IG V R+ + + ++ GY +V F + A QA+E
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALE 72
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN L G+ I+ +Q K +FI N+ ++ + ++ + G ++S +
Sbjct: 73 VLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFG-RILSCK 131
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+V D Q++G+ F+ + CAE + +K++N + D V P+ S A
Sbjct: 132 IVMDEN--GQSKGYGFVHFEKEECAERAIEKINN--MIIRDRVVYVGKFIPKTERKSQAR 187
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
+VK LYVKN P + ++LKE+F+ G+I + G+ + +GFV + + A
Sbjct: 188 KVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKG-FGFVCYLDPDHAE 246
Query: 350 KALKNTEKYEIDGQVLDCSLAK 371
A++ EI+G+VL C+ A+
Sbjct: 247 NAVRTMHGKEIEGRVLYCARAQ 268
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 131/290 (45%), Gaps = 48/290 (16%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + +L G + +I+ ++G++KGY FV F +E A +AIE++
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVM-DENGQSKGYGFVHFEKEECAERAIEKI 161
Query: 182 NSCELK------GKKI-----KCSAAQAK-HRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
N+ ++ GK I K A + K + L++ N P + +++ ++ G + S
Sbjct: 162 NNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYVKNFPPETDNEKLKEMFSEFGE-IKS 220
Query: 230 IELVKDPQNANQNRGFAFIEYYN--HA------------------CAEYSRQKMSNPKFK 269
++KD N +++GF F+ Y + HA CA R++ + K
Sbjct: 221 ACVMKD--NEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQEELK 278
Query: 270 LDDNAPTVSWADPRNAESSAASQVKA-LYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 328
+ + AE + + LYVKNL +I RL+E F+ HG IT +
Sbjct: 279 --------QKIEKQRAERQSNYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKV--M 328
Query: 329 KPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
K RS+ +GFV FA A +A+ + I + L +LA+ + D++
Sbjct: 329 KDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRR 378
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 91/194 (46%), Gaps = 15/194 (7%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++G++ + ++ ++IGP V+S + +D Q+ G+ ++ + + AE + +
Sbjct: 15 LYVGDLHPRVSDSALQAKFSEIGP-VLSARVCRD-LATRQSLGYGYVNFEDPKHAEQALE 72
Query: 262 KMSNPKFKLDDNAPTVSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 319
++ L + W+ DP +S + +++KNL K I Q L + F+ G+
Sbjct: 73 VLNYEP--LMGRPIRIMWSQRDPSLRKSGKGN----IFIKNLDKSIEQKELYDTFSFFGR 126
Query: 320 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 379
I I + GQ + YGFVHF + A +A++ I +V+ P+ ++K
Sbjct: 127 ILSCKIVMDENGQSKG-YGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERK-- 183
Query: 380 GGSNSQKSALNPTY 393
S ++K N Y
Sbjct: 184 --SQARKVKFNNLY 195
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 126/262 (48%), Gaps = 16/262 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+G + SD L+ IG V R+ + + + GY +V F + A QA+E
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN L G+ I+ +Q K +FI N+ ++ + ++ + G ++S +
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFG-RILSCK 131
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+V D Q++G+ F+ + CAE + +K++N + D V P+ S A
Sbjct: 132 IVMDEN--GQSKGYGFVHFEKEECAERAIEKINN--MIIRDRVVYVGKFIPKTERKSQAR 187
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
+VK LY+KN P + ++LKE+F G+I + G+ + +GFV F + A
Sbjct: 188 KVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKG-FGFVCFLDPDHAE 246
Query: 350 KALKNTEKYEIDGQVLDCSLAK 371
A+K EI+G+ L C+ A+
Sbjct: 247 NAVKTMHGKEIEGRALYCARAQ 268
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 131/282 (46%), Gaps = 32/282 (11%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + +L G + +I+ ++G++KGY FV F +E A +AIE++
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVM-DENGQSKGYGFVHFEKEECAERAIEKI 161
Query: 182 NSCELK------GKKI-----KCSAAQAK-HRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
N+ ++ GK I K A + K + L+I N P + +++ + G + S
Sbjct: 162 NNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGE-IKS 220
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM------------SNPKFKLDDNAPTV 277
++KD + +++GF F+ + + AE + + M + + K +
Sbjct: 221 ACVMKDSEG--KSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEELK 278
Query: 278 SWADPRNAESSAASQVKA-LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 336
+ + AE ++ + LYVKNL +I RL+E F+ HG IT + K RS+
Sbjct: 279 QRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKV--MKDANNRSK 336
Query: 337 -YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+GFV FA A +A+ + I + L +LA+ + D++
Sbjct: 337 GFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRR 378
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 90/194 (46%), Gaps = 15/194 (7%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++G++ + ++ ++IGP V+S + +D + G+ ++ + + AE + +
Sbjct: 15 LYVGDLHPRVSDSALQAKFSEIGP-VLSARVCRDLA-TRHSLGYGYVNFEDPKHAEQALE 72
Query: 262 KMSNPKFKLDDNAPTVSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 319
++ L + W+ DP +S + +++KNL K I Q L + F+ G+
Sbjct: 73 VLNYES--LMGRPIRIMWSQRDPSLRKSGKGN----IFIKNLDKSIEQKELYDTFSFFGR 126
Query: 320 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 379
I I + GQ + YGFVHF + A +A++ I +V+ P+ ++K
Sbjct: 127 ILSCKIVMDENGQSKG-YGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERK-- 183
Query: 380 GGSNSQKSALNPTY 393
S ++K N Y
Sbjct: 184 --SQARKVKFNNLY 195
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 126/262 (48%), Gaps = 16/262 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+G + SD L+ IG V R+ + + + GY +V F + A QA+E
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN L G+ I+ +Q K +FI N+ ++ + ++ + G ++S +
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFG-RILSCK 131
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+V D Q++G+ F+ + CAE + +K++N + D V P+ S A
Sbjct: 132 IVMDEN--GQSKGYGFVHFEKEECAERAIEKINN--MIIRDRVVYVGKFIPKTERKSQAR 187
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
+VK LY+KN P + ++LKE+F G+I + G+ + +GFV F + A
Sbjct: 188 KVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKG-FGFVCFLDPDHAE 246
Query: 350 KALKNTEKYEIDGQVLDCSLAK 371
A+K EI+G+ L C+ A+
Sbjct: 247 NAVKTMHGKEIEGRALYCARAQ 268
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 131/282 (46%), Gaps = 32/282 (11%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + +L G + +I+ ++G++KGY FV F +E A +AIE++
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVM-DENGQSKGYGFVHFEKEECAERAIEKI 161
Query: 182 NSCELK------GKKI-----KCSAAQAK-HRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
N+ ++ GK I K A + K + L+I N P + +++ + G + S
Sbjct: 162 NNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGE-IKS 220
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM------------SNPKFKLDDNAPTV 277
++KD + +++GF F+ + + AE + + M + + K +
Sbjct: 221 ACVMKDSEG--KSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEELK 278
Query: 278 SWADPRNAESSAASQVKA-LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 336
+ + AE ++ + LYVKNL +I RL+E F+ HG IT + K RS+
Sbjct: 279 QRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKV--MKDANNRSK 336
Query: 337 -YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+GFV FA A +A+ + I + L +LA+ + D++
Sbjct: 337 GFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRR 378
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 90/194 (46%), Gaps = 15/194 (7%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++G++ + ++ ++IGP V+S + +D + G+ ++ + + AE + +
Sbjct: 15 LYVGDLHPRVSDSALQAKFSEIGP-VLSARVCRDLA-TRHSLGYGYVNFEDPKHAEQALE 72
Query: 262 KMSNPKFKLDDNAPTVSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 319
++ L + W+ DP +S + +++KNL K I Q L + F+ G+
Sbjct: 73 VLNYES--LMGRPIRIMWSQRDPSLRKSGKGN----IFIKNLDKSIEQKELYDTFSFFGR 126
Query: 320 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 379
I I + GQ + YGFVHF + A +A++ I +V+ P+ ++K
Sbjct: 127 ILSCKIVMDENGQSKG-YGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERK-- 183
Query: 380 GGSNSQKSALNPTY 393
S ++K N Y
Sbjct: 184 --SQARKVKFNNLY 195
>gi|74194008|dbj|BAE36923.1| unnamed protein product [Mus musculus]
Length = 368
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 101/186 (54%), Gaps = 17/186 (9%)
Query: 220 VTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 279
+K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N TV W
Sbjct: 8 FSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEW 67
Query: 280 ADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 338
ADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++ Y
Sbjct: 68 ADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYA 119
Query: 339 FVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY----- 393
F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y
Sbjct: 120 FIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYY 178
Query: 394 --PPHL 397
PPH+
Sbjct: 179 YGPPHM 184
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 126/262 (48%), Gaps = 16/262 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+G + SD L+ IG V R+ + + + GY +V F + A QA+E
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALE 72
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN L G+ I+ +Q K +FI N+ ++ + ++ + G ++S +
Sbjct: 73 VLNYESLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFG-RILSCK 131
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+V D Q++G+ F+ + CAE + +K++N + D V P+ S A
Sbjct: 132 IVMDEN--GQSKGYGFVHFEKEECAERAIEKINN--MIIRDRVVYVGKFIPKTERKSQAR 187
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
+VK LY+KN P + ++LKE+F G+I + G+ + +GFV F + A
Sbjct: 188 KVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKG-FGFVCFLDPDHAE 246
Query: 350 KALKNTEKYEIDGQVLDCSLAK 371
A+K EI+G+ L C+ A+
Sbjct: 247 NAVKTMHGKEIEGRALYCARAQ 268
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 131/282 (46%), Gaps = 32/282 (11%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + +L G + +I+ ++G++KGY FV F +E A +AIE++
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVM-DENGQSKGYGFVHFEKEECAERAIEKI 161
Query: 182 NSCELK------GKKI-----KCSAAQAK-HRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
N+ ++ GK I K A + K + L+I N P + +++ + G + S
Sbjct: 162 NNMIIRDRVVYVGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGE-IKS 220
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM------------SNPKFKLDDNAPTV 277
++KD + +++GF F+ + + AE + + M + + K +
Sbjct: 221 ACVMKDSEG--KSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEELK 278
Query: 278 SWADPRNAESSAASQVKA-LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 336
+ + AE ++ + LYVKNL +I RL+E F+ HG IT + K RS+
Sbjct: 279 QRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKV--MKDANNRSK 336
Query: 337 -YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+GFV FA A +A+ + I + L +LA+ + D++
Sbjct: 337 GFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRR 378
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 90/194 (46%), Gaps = 15/194 (7%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++G++ + ++ ++IGP V+S + +D + G+ ++ + + AE + +
Sbjct: 15 LYVGDLHPRVSDSALQAKFSEIGP-VLSARVCRD-LATRHSLGYGYVNFEDPKHAEQALE 72
Query: 262 KMSNPKFKLDDNAPTVSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 319
++ L + W+ DP +S + +++KNL K I Q L + F+ G+
Sbjct: 73 VLNYES--LMGRPIRIMWSQRDPSLRKSGKGN----IFIKNLDKSIEQKELYDTFSFFGR 126
Query: 320 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 379
I I + GQ + YGFVHF + A +A++ I +V+ P+ ++K
Sbjct: 127 ILSCKIVMDENGQSKG-YGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERK-- 183
Query: 380 GGSNSQKSALNPTY 393
S ++K N Y
Sbjct: 184 --SQARKVKFNNLY 195
>gi|444728034|gb|ELW68498.1| Heterogeneous nuclear ribonucleoprotein R [Tupaia chinensis]
Length = 160
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 82/127 (64%), Gaps = 1/127 (0%)
Query: 157 SGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDD 215
SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N +++
Sbjct: 6 SGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKEN 65
Query: 216 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 275
+ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N
Sbjct: 66 ILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV 125
Query: 276 TVSWADP 282
TV WADP
Sbjct: 126 TVEWADP 132
>gi|296089276|emb|CBI39048.3| unnamed protein product [Vitis vinifera]
Length = 400
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 117/222 (52%), Gaps = 6/222 (2%)
Query: 157 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDM 216
+G+ KGYAF+ F A +A+ + E+ GK+ + + +F+GN+ +NW +D+
Sbjct: 5 TGKNKGYAFLRFALASDAKRALAKYPKIEICGKQCGTAPVEGNDTIFLGNIDKNWKNEDV 64
Query: 217 RKAVTKIGPGVI-SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 275
K + +IG I + ++ DP N +NRGFAF+E + A+ + +K+
Sbjct: 65 VKLLQEIGIDKIDKVTVMVDPSNIERNRGFAFLELETNKDAQLAYKKLQKKDVFGKHQNI 124
Query: 276 TVSWADPRN-AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 334
V+WA+P N + +VK +Y + +P ++++++ F G+I VV+ +R
Sbjct: 125 KVAWAEPLNEPDEDEMLKVKTVYAEYIPSSWEEEKVRDCFKKFGEIESVVLARNLRSSKR 184
Query: 335 SRYGFVHFAERSSAMKALKNTEK---YEIDGQV-LDCSLAKP 372
+ FV + R +A++ +++ + ++ + +V + SLAKP
Sbjct: 185 KDFAFVKYTTREAALECIESFSREPLHDAECKVKVKVSLAKP 226
>gi|242083906|ref|XP_002442378.1| hypothetical protein SORBIDRAFT_08g019135 [Sorghum bicolor]
gi|241943071|gb|EES16216.1| hypothetical protein SORBIDRAFT_08g019135 [Sorghum bicolor]
Length = 213
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 81/141 (57%), Gaps = 6/141 (4%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G+EV++GG+P A++ LR S GE+ +VRIMK ++ G +KGY FV F +E A+ A
Sbjct: 74 GTEVFVGGLPRSATESMLREIFSSCGEIIDVRIMKDQN-GHSKGYGFVRFSKREYANTAK 132
Query: 179 EELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK---- 234
+ N EL+GK++ + + +F GN+ + W ++ + + K V+S++L
Sbjct: 133 RQKNGIELQGKRLDVDLSMDQDTVFFGNLCKEWTSEEFEELIHKTFKDVVSVDLAMASNR 192
Query: 235 -DPQNANQNRGFAFIEYYNHA 254
N NRGFAF+ + +HA
Sbjct: 193 GSSNKRNINRGFAFVRFTSHA 213
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 14/115 (12%)
Query: 259 SRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 318
SR KM+ P+ D+ DPR A + ++V LP+ T+ L+E+F+ G
Sbjct: 53 SRVKMAPPRGGYDEQ-------DPRTARGTE------VFVGGLPRSATESMLREIFSSCG 99
Query: 319 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373
+I V I + G + YGFV F++R A A + E+ G+ LD L+ Q
Sbjct: 100 EIIDVRIMKDQNGHSKG-YGFVRFSKREYANTAKRQKNGIELQGKRLDVDLSMDQ 153
>gi|414589121|tpg|DAA39692.1| TPA: hypothetical protein ZEAMMB73_249765 [Zea mays]
Length = 618
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 150/318 (47%), Gaps = 25/318 (7%)
Query: 70 VEEEEETEDVVDGIDAQKHYDGDEEMKVAESD----KDDEKKKHAELLALPPHGSEVYLG 125
+ E+E EDV+ +++ DEE + ++ + +KK + EV++
Sbjct: 64 ITEDEPAEDVIMEEPSEEVIMEDEEPTPSPAEEVVGEGKRRKKRVDY--------EVFVS 115
Query: 126 GIPHDASDDDLRHFCKSIGEVTEVRIMKG-KDSGEAKGYAFVTFRTKELASQAIEELNSC 184
G+P DA+++D+ G++ EVR+++ D KG+AFV F A A +L
Sbjct: 116 GLPQDAAEEDVAQALADAGDIEEVRLVRDPADQRLNKGFAFVRFAAAWQARWAANDLREA 175
Query: 185 ELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGP----GVISIELVKDPQNAN 240
+KGK L + N+ +W +DD+ K+ P + I L++ P
Sbjct: 176 TIKGKACGICKNSETETLHLRNICFDWSKDDL---AEKLKPFKLENLDRINLIEHPDRKG 232
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKL-DDNAPTVSWADPRNAESSAASQVKALYVK 299
+NRG+AF+++ H A + K+ L D+ +S+++ + + +VK++++
Sbjct: 233 KNRGYAFLDFRTHVDAVEAFVKLQKIDLYLGTDSRANISFSNTLSQDDEIMEKVKSVFLD 292
Query: 300 NLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359
+P +D+++E+F G+I + + R +GF+ F R SA+ +K K
Sbjct: 293 GVPPHWDEDKVREIFGKFGEIDSIQLARNMFTAARKDFGFIGFTARQSALDCIKMVNKDG 352
Query: 360 I---DGQV-LDCSLAKPQ 373
+ G+V + SL +P+
Sbjct: 353 VGEGSGKVPIKASLQRPR 370
>gi|29841435|gb|AAP06467.1| similar to GenBank Accession Number AJ298278 poly(A) binding
protein in Rattus norvegicus [Schistosoma japonicum]
Length = 307
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 133/268 (49%), Gaps = 16/268 (5%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+G + SD L+ IG V R+ + + ++ GY +V F + A QA+E
Sbjct: 13 SSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALE 72
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN L G+ I+ +Q K +FI N+ ++ + ++ + G ++S +
Sbjct: 73 VLNYEPLMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKSIEQKELYDTFSFFGR-ILSCK 131
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+V D Q++G+ F+ + CAE + +K++N + D V P+ S A
Sbjct: 132 IVMDEN--GQSKGYGFVHFEKEECAERAIEKINN--MIIRDRVVYVGKFIPKTERKSQAR 187
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
+VK LYVKN P + ++LKE+F+ G+I + G+ + +GFV + + A
Sbjct: 188 KVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKG-FGFVCYLDPDHAE 246
Query: 350 KALKNTEKYEIDGQVLDCSLAKPQADQK 377
A++ EI+G+VL C+ A+ + +++
Sbjct: 247 NAVRTMHGKEIEGRVLYCARAQRKEERQ 274
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 90/196 (45%), Gaps = 11/196 (5%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++G++ + ++ ++IGP V+S + +D Q+ G+ ++ + + AE + +
Sbjct: 15 LYVGDLHPRVSDSALQAKFSEIGP-VLSARVCRDLA-TRQSLGYGYVNFEDPKHAEQALE 72
Query: 262 KMSNPKFKLDDNAPTVSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 319
++ L + W+ DP +S + +++KNL K I Q L + F+ G+
Sbjct: 73 VLNYEP--LMGRPIRIMWSQRDPSLRKSGKGN----IFIKNLDKSIEQKELYDTFSFFGR 126
Query: 320 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 379
I I + GQ + YGFVHF + A +A++ I +V+ P+ ++K+
Sbjct: 127 ILSCKIVMDENGQSKG-YGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKSQ 185
Query: 380 GGSNSQKSALNPTYPP 395
+ +PP
Sbjct: 186 ARKVKFNNLYVKNFPP 201
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 151/323 (46%), Gaps = 32/323 (9%)
Query: 53 EVEEEEEVEVEEEVEEEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAEL 112
+V E E + VE++VE++E + D K EE AE+ KD + K E
Sbjct: 5 DVNELTEATAKLSVEDKVEKKEAASPASEKADGAK----SEE---AENGKDTKDSKDNEQ 57
Query: 113 LALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE 172
+ +Y+G + ++ DL +G+V+ +R+ + + ++ YA+V ++ +E
Sbjct: 58 TF-----ASLYVGDLDPSVTESDLYEIFSKVGQVSSIRVCRBAVTKKSLCYAYVNYQKRE 112
Query: 173 LASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIG 224
A A++ L C++KGK+ + +Q +FI N+ + + + G
Sbjct: 113 EAEHALDTLAFCDIKGKQCRIMWSQRDPSMRKKGTGNVFIKNLHPDIDNKTLYDTFSTFG 172
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN-----APTVSW 279
++S ++ D ++GF F+ Y + AE ++ + N L +N AP +
Sbjct: 173 K-ILSCKIATDEH--GHSKGFGFVHYDD---AESAKAAIENVNGMLLNNMEVYVAPHIPR 226
Query: 280 ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
D + +YVKN ++T+D+L+E+F +GK+T +P G+ R +GF
Sbjct: 227 KDRESKMQEMIKNFTNVYVKNFGPEMTEDQLREMFEAYGKVTSTYLPTDNEGKARG-FGF 285
Query: 340 VHFAERSSAMKALKNTEKYEIDG 362
V+F + A KA+ + E++G
Sbjct: 286 VNFEDHXEAAKAVDALNEKELEG 308
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 135/354 (38%), Gaps = 43/354 (12%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + D + L + G++ +I + G +KG+ FV + E A AIE +
Sbjct: 150 VFIKNLHPDIDNKTLYDTFSTFGKILSCKIAT-DEHGHSKGFGFVHYDDAESAKAAIENV 208
Query: 182 NSCELKG----------KKIKCSAAQAKHRLFIGNVPRNWG----EDDMRKAVTKIGPGV 227
N L +K + S Q + F +N+G ED +R+ G V
Sbjct: 209 NGMLLNNMEVYVAPHIPRKDRESKMQEMIKNFTNVYVKNFGPEMTEDQLREMFEAYGK-V 267
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF--------------KLDDN 273
S L D N + RGF F+ + +H A + ++ + + +
Sbjct: 268 TSTYLPTD--NEGKARGFGFVNFEDHXEAAKAVDALNEKELEGGRILYVGRAQKKREREE 325
Query: 274 APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
+ W R S V L+VKNL I +LKE FA +GKIT + G+
Sbjct: 326 SLRKQWQQARQERISKYQGVN-LFVKNLDDTIDDTKLKEEFAPYGKITSAKVMTNDAGKS 384
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 393
R +GFV + + A +A+ + + G+ L +LA Q+ N
Sbjct: 385 RG-FGFVCYTKPEEATRAINEMHQRMVMGKPLYVALA-----QRKEVRHNQLSQQFQQRN 438
Query: 394 PPHLGYGMVGGAYGALGAGYV---PAGFAQPMVYG-RGAAPGGMAMLPMLLPDG 443
L V G G A AGF PM G RGA G M++ G
Sbjct: 439 QMRLQQAAVQGGMGQFVAPMFYGQNAGFIPPMPAGVRGAPFAGNGAPQMMMQQG 492
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 76/170 (44%), Gaps = 29/170 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K + +++ + + + VY+ + ++D LR ++ G+VT + + G+A+G+ F
Sbjct: 227 KDRESKMQEMIKNFTNVYVKNFGPEMTEDQLREMFEAYGKVTST-YLPTDNEGKARGFGF 285
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR------------------------ 201
V F A++A++ LN EL+G +I K R
Sbjct: 286 VNFEDHXEAAKAVDALNEKELEGGRILYVGRAQKKREREESLRKQWQQARQERISKYQGV 345
Query: 202 -LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
LF+ N+ + +++ G + S +++ + +A ++RGF F+ Y
Sbjct: 346 NLFVKNLDDTIDDTKLKEEFAPYGK-ITSAKVMTN--DAGKSRGFGFVCY 392
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +++ + D L+ G++T ++M D+G+++G+ FV + E A++A
Sbjct: 343 QGVNLFVKNLDDTIDDTKLKEEFAPYGKITSAKVMTN-DAGKSRGFGFVCYTKPEEATRA 401
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
I E++ + GK + + AQ K
Sbjct: 402 INEMHQRMVMGKPLYVALAQRK 423
>gi|321465036|gb|EFX76040.1| hypothetical protein DAPPUDRAFT_32249 [Daphnia pulex]
Length = 225
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 115/239 (48%), Gaps = 14/239 (5%)
Query: 123 YLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN 182
+ G + D +D+ + G + +R++ S ++G+ +V F T E + +I+ LN
Sbjct: 1 FFGNVLRDVMLEDIIPLFEDCGSIWSLRLVMDPLSTLSRGFGYVNFTTMEAVAVSIDLLN 60
Query: 183 SCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQN 242
LK A + L+IGN+P++ +DD++ + + G++++
Sbjct: 61 GLILKETGAMQVNANVPNCLYIGNIPKSKDKDDIKTEFSIVSGGILNVI----SAETKLI 116
Query: 243 RGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLP 302
GF +EY + A +++Q+++N K+ + V WADP A+ +K L+V +
Sbjct: 117 WGFCLVEYDSIQSAAFAKQQLNNGTIKVFGSDIIVDWADPNEAKKHKI--IKVLHVGIIS 174
Query: 303 KDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 361
K + +R+KELF HG P + ++ + Y FVH R A KA+++ +D
Sbjct: 175 KRSSMERIKELFGEHG--------PIQLVEKFADYAFVHCENRDDAAKAVEDLNDRTVD 225
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 122/255 (47%), Gaps = 20/255 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+G + ++ L + +V +R+ + + ++ GYA+V F + + A A+E
Sbjct: 35 SSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAME 94
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN + GK I+ + +FI N+ + +R G V+S +
Sbjct: 95 HLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAFGT-VLSCK 153
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS-WADPRNAESSAA 290
+ D + Q++G+ F+++ + AE S +K++ L+D V + + +
Sbjct: 154 VAVD--SNGQSKGYGFVQFESEESAEISIEKLNG--MLLNDKQVYVGHFIRHQERIRANG 209
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
SQ +YVKNLP+ T D LK LFA HG IT ++ G+ + +GFV+F SA
Sbjct: 210 SQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKC-FGFVNFQNTDSAAA 268
Query: 351 ALKNTEKYEIDGQVL 365
A++ ++DG VL
Sbjct: 269 AVE-----KLDGTVL 278
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 113/460 (24%), Positives = 193/460 (41%), Gaps = 82/460 (17%)
Query: 81 DGIDAQKHYD----GDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDL 136
D ++A +H + + +++ S++D +K + V++ + + L
Sbjct: 88 DAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGY--------ANVFIKNLDLSIDNKAL 139
Query: 137 RHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGK------- 189
R + G V ++ + G++KGY FV F ++E A +IE+LN L K
Sbjct: 140 RDTFAAFGTVLSCKVAVDSN-GQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVYVGHF 198
Query: 190 -----KIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRG 244
+I+ + +Q + +++ N+P +DD++ G I+ +V N +++
Sbjct: 199 IRHQERIRANGSQFTN-VYVKNLPETTTDDDLKNLFAP--HGTITSAIVMTDSNG-KSKC 254
Query: 245 FAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKA--------- 295
F F+ + N A + +K+ DD V A R AE A + K
Sbjct: 255 FGFVNFQNTDSAAAAVEKLDGTVLG-DDKTLYVGRAQ-RKAEREAELKAKFEQERKSRFE 312
Query: 296 ------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
LY+KNL I ++LKELF+ +G IT + + G + GFV F+ A
Sbjct: 313 KLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGS-GFVAFSSPDEAT 371
Query: 350 KALKNTEKYEIDGQV-----LDCSLAKPQADQK-----------TSGGSNSQKSALNPTY 393
KAL E++G++ L ++A+ + ++K +GG +S S + P +
Sbjct: 372 KALN-----EMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRAAGGISSLPSGI-PGF 425
Query: 394 PPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMA-MLPMLLPDGRIGYVLQQP 452
H G V G G G A P G G P M+ M P + P+ + Y Q+
Sbjct: 426 --HPGAARVSPQQMYYGQGN--PGLAPPQPAGYGFQPQLMSGMRPGMGPNFLMPYQFQRQ 481
Query: 453 GVQQHNPPPQPRSG-RGGAGSSSSGGRRSTDNGRGRS-RY 490
G P PR G R G S ++ G G+S RY
Sbjct: 482 G------QPGPRLGVRRGGNSQPLPQQQLPLRGYGQSFRY 515
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 122/255 (47%), Gaps = 20/255 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+G + ++ L + +V +R+ + + ++ GYA+V F + + A A+E
Sbjct: 35 SSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAME 94
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN + GK I+ + +FI N+ + +R G V+S +
Sbjct: 95 HLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAFGT-VLSCK 153
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS-WADPRNAESSAA 290
+ D + Q++G+ F+++ + AE S +K++ L+D V + + +
Sbjct: 154 VAVD--SNGQSKGYGFVQFESEESAEISIEKLNG--MLLNDKQVYVGHFIRHQERIRANG 209
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
SQ +YVKNLP+ T D LK LFA HG IT ++ G+ + +GFV+F SA
Sbjct: 210 SQFTNVYVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKC-FGFVNFQNTDSAAA 268
Query: 351 ALKNTEKYEIDGQVL 365
A++ ++DG VL
Sbjct: 269 AVE-----KLDGTVL 278
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 114/460 (24%), Positives = 194/460 (42%), Gaps = 82/460 (17%)
Query: 81 DGIDAQKHYD----GDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDL 136
D ++A +H + + +++ S++D +K + V++ + + L
Sbjct: 88 DAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGY--------ANVFIKNLDLSIDNKAL 139
Query: 137 RHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGK------- 189
R + G V ++ + G++KGY FV F ++E A +IE+LN L K
Sbjct: 140 RDTFAAFGTVLSCKVAVDSN-GQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVYVGHF 198
Query: 190 -----KIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRG 244
+I+ + +Q + +++ N+P +DD++ G I+ +V N +++
Sbjct: 199 IRHQERIRANGSQFTN-VYVKNLPETTTDDDLKNLFAP--HGTITSAIVMTDSNG-KSKC 254
Query: 245 FAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKA--------- 295
F F+ + N A + +K+ DD V A R AE A + K
Sbjct: 255 FGFVNFQNTDSAAAAVEKLDGTVLG-DDKTLYVGRAQ-RKAEREAELRAKFEQERKSRFE 312
Query: 296 ------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
LY+KNL I ++LKELF+ +G IT + + G + GFV F+ A
Sbjct: 313 KLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGS-GFVAFSSPDEAT 371
Query: 350 KALKNTEKYEIDGQV-----LDCSLAKPQADQK-----------TSGGSNSQKSALNPTY 393
KAL E++G++ L ++A+ + ++K +GG +S S + P +
Sbjct: 372 KALN-----EMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRAAGGISSLPSGI-PGF 425
Query: 394 PPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMA-MLPMLLPDGRIGYVLQQP 452
H G V G G G A P G G P M+ M P + P+ + Y Q+
Sbjct: 426 --HPGAARVSPQQMYYGQGN--PGLAPPQPAGYGFQPQLMSGMRPGMGPNFLMPYQFQRQ 481
Query: 453 GVQQHNPPPQPRSG-RGGAGSSSSGGRRSTDNGRGRS-RY 490
G P PRSG R G S ++ G G+S RY
Sbjct: 482 G------QPGPRSGVRRGGNSQPLPQQQLPLRGYGQSFRY 515
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 125/259 (48%), Gaps = 18/259 (6%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G+ +Y+G + S+ L IG V+ +R+ + + + GYA+V F E +AI
Sbjct: 37 GASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGRKAI 96
Query: 179 EELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISI 230
E+LN +KGK + +Q ++I N+ + + + G ++S
Sbjct: 97 EQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFG-NILSC 155
Query: 231 ELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
++ D +RGF F+ + N + A + + ++ ++D V+W + S
Sbjct: 156 KVATDDNGV--SRGFGFVHFENESDARDAIEAVNG--MLMNDQEVYVAWHVSKKDRQSKL 211
Query: 291 SQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346
+VKA +YVKN+ + +Q+ ++LF+ +GKIT V+ G+ R +GF++F + S
Sbjct: 212 EEVKAKFTNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDSEGKLRG-FGFINFEDHS 270
Query: 347 SAMKALKNTEKYEIDGQVL 365
+A +A+ + + GQ L
Sbjct: 271 TAARAVDELNESDFRGQTL 289
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 117/276 (42%), Gaps = 31/276 (11%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+ + + L + G + ++ D+G ++G+ FV F + A AIE +
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVAT-DDNGVSRGFGFVHFENESDARDAIEAV 186
Query: 182 NSCEL-------------KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N + K ++ K +AK +++ N+ +++ + +K G +
Sbjct: 187 NGMLMNDQEVYVAWHVSKKDRQSKLEEVKAKFTNIYVKNIDLETSQEEFEQLFSKYGK-I 245
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
S L KD + + RGF FI + +H+ A + +++ F K +
Sbjct: 246 TSAVLEKDSEG--KLRGFGFINFEDHSTAARAVDELNESDFRGQTLYVGRAQKKHERQQE 303
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E A Q L++KNL I ++LK+ FA G IT V + + G R
Sbjct: 304 LKKQYETARLEKLAKYQGVNLFIKNLDDSIDDEKLKDEFAPFGTITSVKVMKDEAGSSRG 363
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
+GFV F+ A KA+ + + G+ L ++A+
Sbjct: 364 -FGFVCFSTPEEATKAITEKNQQLVAGKPLYVAIAQ 398
>gi|355715816|gb|AES05411.1| RNA binding motif protein 46 [Mustela putorius furo]
Length = 149
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 88/150 (58%), Gaps = 2/150 (1%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI L
Sbjct: 1 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRIL 59
Query: 182 NSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
N+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + +
Sbjct: 60 NNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKT 119
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKL 270
+NRGFAF+EY +H A +R+K+ F+L
Sbjct: 120 KNRGFAFVEYESHRAAAMARRKLIPGTFQL 149
>gi|197260810|gb|ACH56905.1| heterogeneous nuclear ribonucleoprotein r [Simulium vittatum]
Length = 252
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 84/138 (60%), Gaps = 9/138 (6%)
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN-AESSAASQVKALYVK 299
+NRGF F+EY +H A +++++ + K+ V WADP+ + S+VK LYV+
Sbjct: 1 ENRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEGTMSKVKVLYVR 60
Query: 300 NLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359
NL DI++++LKE F ++G++ +V ++ Y FVH+ +R + + A+++ + +
Sbjct: 61 NLTHDISEEKLKEHFENYGRVERV--------KKIKDYAFVHYEDRDNTVLAMRDLDGKD 112
Query: 360 IDGQVLDCSLAKPQADQK 377
I G ++ SLAKP +D+K
Sbjct: 113 IGGSCIEVSLAKPPSDKK 130
>gi|170034902|ref|XP_001845311.1| heterogeneous nuclear ribonucleoprotein r [Culex quinquefasciatus]
gi|167876604|gb|EDS39987.1| heterogeneous nuclear ribonucleoprotein r [Culex quinquefasciatus]
Length = 542
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 95/177 (53%), Gaps = 18/177 (10%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+F G +P++ ED++ K G + + L+ DP NRG+AF+ + SR
Sbjct: 181 VFCGKIPKDMYEDELIPLFEKCGK-IWDLRLMMDPMTGT-NRGYAFVTFT-------SRD 231
Query: 262 KMSNPKFKLDDNAPTVSWADPRN-AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
N ++ V WADP+ + S+VK LYV+NL +D ++++LKE F GK+
Sbjct: 232 AACNAVREVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDTSEEKLKESFEAFGKV 291
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+V ++ Y FVHF +R A+ A+K+ + +I+G ++ SLAKP +D+K
Sbjct: 292 ERV--------KKIKDYAFVHFEDRDHAVNAMKDLDGKDINGSAIEVSLAKPPSDKK 340
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P +G EV+ G IP D +D+L + G++ ++R+M +G +GYAFVTF +++ A
Sbjct: 175 PGNGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMTGTNRGYAFVTFTSRDAAC 234
Query: 176 QAIEELNSCEL 186
A+ E+ C++
Sbjct: 235 NAVREVWGCDI 245
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 126/256 (49%), Gaps = 24/256 (9%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + +D L +G V VR+ + + + GY +V F + A++AI+
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
ELN L GK I+ + HR +FI N+ + + + G ++
Sbjct: 96 ELNYIPLYGKPIRVMYS---HRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFG-NIV 151
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ D ++ Q++G+ F++Y N A+ + +K++ L+D V R S
Sbjct: 152 SCKVAVD--SSGQSKGYGFVQYANEESAQKAIEKLNG--MLLNDKQVYVGPFLRRQERDS 207
Query: 289 AASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAER 345
A++ K +YVKNL + T D LK F +GKIT V+ K G+ +S+ +GFV+F
Sbjct: 208 TANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV--MKDGEGKSKGFGFVNFENA 265
Query: 346 SSAMKALKNTEKYEID 361
A +A+++ ++ D
Sbjct: 266 DDAARAVESLNGHKFD 281
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 150/340 (44%), Gaps = 55/340 (16%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
I H A D F G + ++ SG++KGY FV + +E A +AIE+LN L
Sbjct: 135 IDHKALHDTFSSF----GNIVSCKVAV-DSSGQSKGYGFVQYANEESAQKAIEKLNGMLL 189
Query: 187 KGKKIKC-----------SAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
K++ +A + K +++ N+ + +DD++ A + G + S ++K
Sbjct: 190 NDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK-ITSAVVMK 248
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---------- 284
D + +++GF F+ + N A + + ++ KF DD V A ++
Sbjct: 249 DGEG--KSKGFGFVNFENADDAARAVESLNGHKF--DDKEWYVGRAQKKSERETELRVRY 304
Query: 285 ----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFV 340
E++ Q LYVKNL I+ ++LKE+F+ G +T + G + GFV
Sbjct: 305 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS-GFV 363
Query: 341 HFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT---SGGSNSQKSALNPTYPPHL 397
FA A +A+ I+ + L ++A+ + D++ + S + A+ P+ P +
Sbjct: 364 AFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRM 423
Query: 398 GYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLP 437
GG G Q M YG+ A P AM+P
Sbjct: 424 PVYPPGG-----------PGIGQQMFYGQ-APP---AMIP 448
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 135/273 (49%), Gaps = 24/273 (8%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + +D L +G V VR+ + + + GY +V F + A++AI+
Sbjct: 20 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 79
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
ELN L GK I+ + HR +FI N+ + + + G ++
Sbjct: 80 ELNYIPLYGKPIRVMYS---HRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFG-NIV 135
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ D ++ Q++G+ F++Y N A+ + +K++ L+D V R S
Sbjct: 136 SCKVAVD--SSGQSKGYGFVQYANEESAQKAIEKLNG--MLLNDKQVYVGPFLRRQERDS 191
Query: 289 AASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAER 345
A++ K +YVKNL + T D LK F +GKIT V+ K G+ +S+ +GFV+F
Sbjct: 192 TANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV--MKDGEGKSKGFGFVNFENA 249
Query: 346 SSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A +A+++ ++ D + A+ +++++T
Sbjct: 250 DDAARAVESLNGHKFDDKEWYVGRAQKKSERET 282
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 150/340 (44%), Gaps = 55/340 (16%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
I H A D F G + ++ SG++KGY FV + +E A +AIE+LN L
Sbjct: 119 IDHKALHDTFSSF----GNIVSCKVAV-DSSGQSKGYGFVQYANEESAQKAIEKLNGMLL 173
Query: 187 KGKKIKC-----------SAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
K++ +A + K +++ N+ + +DD++ A + G + S ++K
Sbjct: 174 NDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK-ITSAVVMK 232
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---------- 284
D + +++GF F+ + N A + + ++ KF DD V A ++
Sbjct: 233 DGEG--KSKGFGFVNFENADDAARAVESLNGHKF--DDKEWYVGRAQKKSERETELRVRY 288
Query: 285 ----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFV 340
E++ Q LYVKNL I+ ++LKE+F+ G +T + G + GFV
Sbjct: 289 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS-GFV 347
Query: 341 HFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT---SGGSNSQKSALNPTYPPHL 397
FA A +A+ I+ + L ++A+ + D++ + S + A+ P+ P +
Sbjct: 348 AFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRM 407
Query: 398 GYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLP 437
GG G Q M YG+ A P AM+P
Sbjct: 408 PVYPPGG-----------PGIGQQMFYGQ-APP---AMIP 432
>gi|270002294|gb|EEZ98741.1| hypothetical protein TcasGA2_TC001296 [Tribolium castaneum]
Length = 339
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 118/246 (47%), Gaps = 11/246 (4%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP GSEV++G IP SDD+L G V + M D+G K +AF+++ E A+
Sbjct: 28 PPPGSEVFVGNIPSVISDDELIFIFSEAGRVYRFQRMID-DNGNNKPFAFISYHNDEDAN 86
Query: 176 QAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
+A+ + + K +K+ + RL+ GN+PR ++D+ + ++ + ++
Sbjct: 87 KAVLFFHKFSIRKHRKLNVHLSVNNCRLYFGNIPREMTKEDVMLNLLNFIEKIVKVLVLP 146
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA--DPRNAESSAASQ 292
N NRG+AF+++ +H A ++++++ F TV WA +P Q
Sbjct: 147 SRCNTALNRGYAFVDFVSHTLAAFAKRQLELGLF-WGGRHITVEWAYREPL-VPPFIFLQ 204
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
+K L KN+P D ++ ++ + IT V + ++ + FVHF +A A+
Sbjct: 205 IKCLIFKNIPIDCSRCVFRKFLSLFVHITTV-----RRIYKKDSHAFVHFQSWEAAEIAI 259
Query: 353 KNTEKY 358
K +
Sbjct: 260 KTLRSH 265
>gi|324506631|gb|ADY42829.1| Heterogeneous nuclear ribonucleoprotein Q [Ascaris suum]
Length = 341
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 101/177 (57%), Gaps = 11/177 (6%)
Query: 206 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ-NAN-QNRGFAFIEYYNHACAEYSRQKM 263
N+P++ ++++ + GV+ + P AN +NRGF F+++ +H A +++K+
Sbjct: 7 NIPKSKSKEEILAEFKEHTEGVVDCIIYTSPDAGANRKNRGFCFLDFCDHKAASDAKRKI 66
Query: 264 SNPKFKLDDNAPTVSWADPRN-AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITK 322
K + ++ V WA+ + + S+VK LYV+NL + +T+++LKE+FA HG++ +
Sbjct: 67 HAGKLRPWNSDLVVDWAEQQEEPDEETMSKVKVLYVRNLKEAVTEEQLKEMFAAHGEVER 126
Query: 323 VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 379
++ Y F+HF ER A+KA++ ++G ++ SLAKPQ D+K +
Sbjct: 127 A--------KKIRDYAFIHFKEREPALKAMEALNGTVLEGIAIEISLAKPQGDKKKT 175
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 137/269 (50%), Gaps = 17/269 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++D L ++G V +RI + + + GYA+V F A +A++
Sbjct: 109 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQRALD 168
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ R+ + + + G ++S +
Sbjct: 169 TMNFDTIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGK-ILSSK 227
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES---S 288
++ D Q + RG+AF+ + N A+ + ++M+ K D + + ++ E+ +
Sbjct: 228 VMSDDQGS---RGYAFVHFQNQIAADRAIEEMNGALLK-DCRLFVGRFKNRKDREAELRN 283
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A++ +Y+KN D+ +RLKE+F+ +GK V + G+ + +GFV F +A
Sbjct: 284 KANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAA 342
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA++ +I+GQ+L A+ +++++
Sbjct: 343 KKAVEEMNGKDINGQLLFVGRAQKKSERQ 371
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 127/273 (46%), Gaps = 44/273 (16%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G++ ++M D ++GYAFV F+ + A +AIEE+
Sbjct: 199 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMS--DDQGSRGYAFVHFQNQIAADRAIEEM 256
Query: 182 NS-----CEL-----KGKKIKCSAAQAKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N C L K +K + + + K F +N+G+D +++ +K G
Sbjct: 257 NGALLKDCRLFVGRFKNRKDREAELRNKANEFTNVYIKNFGDDMDDERLKEVFSKYGK-T 315
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S++++ D ++ +++GF F+ + +H A+ + ++M+ ++ V A ++
Sbjct: 316 LSVKVMTD--SSGKSKGFGFVSFDSHEAAKKAVEEMNGKD--INGQLLFVGRAQKKSERQ 371
Query: 288 SAASQV--------------KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
+ QV LY+KNL I ++L F+ G I++V I +
Sbjct: 372 AELKQVFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISRVKIMRE---EG 428
Query: 334 RSR-YGFVHFAERSSAMKALKNTEKYEIDGQVL 365
RS+ +G + F+ A KA+ E++G++L
Sbjct: 429 RSKGFGLICFSSPEEATKAMA-----EMNGRIL 456
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 16/185 (8%)
Query: 187 KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFA 246
+ K++ +A + L++G++ + ED + K + +GP V+SI + +D ++ G+A
Sbjct: 96 RSKEMNVAAKYRQASLYVGDLHADVTEDLLFKKFSTVGP-VLSIRICRDLV-TRRSLGYA 153
Query: 247 FIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDIT 306
++ + A A+ + M+ F P R+A S + +++KNL + I
Sbjct: 154 YVNFLKLADAQRALDTMN---FDTIKGKPIRLMWSQRDAYLR-KSGIGNVFIKNLDRSID 209
Query: 307 QDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVL 365
L E F+ GKI + G SR Y FVHF + +A +A++ E++G +L
Sbjct: 210 NKTLYEHFSAFGKILSSKVMSDDQG---SRGYAFVHFQNQIAADRAIE-----EMNGALL 261
Query: 366 -DCSL 369
DC L
Sbjct: 262 KDCRL 266
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 29/171 (16%)
Query: 104 DEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGY 163
+ K + AEL + VY+ D D+ L+ G+ V++M SG++KG+
Sbjct: 273 NRKDREAELRNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMT-DSSGKSKGF 331
Query: 164 AFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------ 199
FV+F + E A +A+EE+N ++ G+ + AQ K
Sbjct: 332 GFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKSERQAELKQVFEQLKQERFRRCQG 391
Query: 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
+L+I N+ ++ + + + G SI VK + +++GF I +
Sbjct: 392 MKLYIKNLDDTIDDEKLWREFSSFG----SISRVKIMREEGRSKGFGLICF 438
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G ++Y+ + D+ L S G ++ V+IM+ + G +KG+ + F + E A++A
Sbjct: 390 QGMKLYIKNLDDTIDDEKLWREFSSFGSISRVKIMR--EEGRSKGFGLICFSSPEEATKA 447
Query: 178 IEELNSCELKGKKIKCSAAQ 197
+ E+N L K + + AQ
Sbjct: 448 MAEMNGRILGSKPLYIALAQ 467
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 141/287 (49%), Gaps = 24/287 (8%)
Query: 105 EKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYA 164
E +++E LA +Y+G + ++ DL IG+V+ +R+ + S ++ GYA
Sbjct: 38 ESTQNSETLA------SLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYA 91
Query: 165 FVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDM 216
+V F++ +A+EELN +KGK + +Q +FI N+ +
Sbjct: 92 YVNFQSHADGEKALEELNYTPIKGKACRIMWSQRDPSLRRNGSGNIFIKNLHPAIDNKTL 151
Query: 217 RKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN--- 273
+ G ++S ++ D +N N ++GF F+ Y A+ + + ++ L+D+
Sbjct: 152 HDTFSAFGK-ILSCKIATD-ENGN-SKGFGFVHYEESESAKAAIENVNG--MLLNDHEVY 206
Query: 274 -APTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 332
P ++ D ++ + +YVKN+ + +D+L+E F+ G I+ + + + G+
Sbjct: 207 VGPHLAKKDRQSKMRELIANFTNVYVKNINLNWDEDKLRETFSPFGTISSIFLSKDESGK 266
Query: 333 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 379
R +GFV+F + A+KA++ +IDGQ L A+ ++++ S
Sbjct: 267 SRG-FGFVNFEKHEDAVKAVEELNNKDIDGQKLYVGRAQKKSERMES 312
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 103/422 (24%), Positives = 178/422 (42%), Gaps = 69/422 (16%)
Query: 83 IDAQKHYDGDEEMKVAESDKDDEKKKHAELL------ALPPHGS-EVYLGGIPHDASDDD 135
++ Q H DG++ ++ E + K K ++ +L +GS +++ + H A D+
Sbjct: 93 VNFQSHADGEKALE--ELNYTPIKGKACRIMWSQRDPSLRRNGSGNIFIKNL-HPAIDNK 149
Query: 136 LRH-FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK------G 188
H + G++ +I ++G +KG+ FV + E A AIE +N L G
Sbjct: 150 TLHDTFSAFGKILSCKIAT-DENGNSKGFGFVHYEESESAKAAIENVNGMLLNDHEVYVG 208
Query: 189 KKIKCSAAQAKHR--------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ Q+K R +++ N+ NW ED +R+ + G + SI L KD +
Sbjct: 209 PHLAKKDRQSKMRELIANFTNVYVKNINLNWDEDKLRETFSPFGT-ISSIFLSKD--ESG 265
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA-------ESSAASQV 293
++RGF F+ + H A + ++++N +D V A ++ + AA Q
Sbjct: 266 KSRGFGFVNFEKHEDAVKAVEELNNKD--IDGQKLYVGRAQKKSERMESLKHQYEAARQE 323
Query: 294 KA-------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346
+ L+VKNL I +L+E F +G IT + G+ + +GFV ++
Sbjct: 324 QLNKYQGYNLFVKNLDDSIDDAKLEEEFKPYGTITSAKVMLDDAGKSKG-FGFVCYSSPE 382
Query: 347 SAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAY 406
A KA+ + + G+ L +LA+ + +++ + Q A N A
Sbjct: 383 EATKAITEMHQRMVAGKPLYVALAQRKEVRRSQ--LSQQIQARNQMRMQQ------AAAQ 434
Query: 407 GALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSG 466
G +G F PM YG+ P LP G G PG Q PR G
Sbjct: 435 GGMGQ------FVAPMFYGQN---------PGFLPPGARGAPFAAPGQQMMMQQGMPRPG 479
Query: 467 RG 468
+G
Sbjct: 480 QG 481
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 124/259 (47%), Gaps = 25/259 (9%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D L +G V VR+ + +S ++ GYA+V + + A++A+E
Sbjct: 35 TSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALE 94
Query: 180 ELNSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN + GK I+ S +FI N+ ++ + G ++S +
Sbjct: 95 LLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFG-NILSCK 153
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN----APTVSWADPRNAES 287
+ DP + ++RG+ F+++ A+ + K++ ++D P V D N S
Sbjct: 154 IATDP--SGESRGYGFVQFEKDESAQSAIDKLNG--MLINDKKVFVGPFVRKQDRENVSS 209
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+ + +YVKNL +T D LKE+F +G IT V+ G+ R +GFV+F +
Sbjct: 210 NI--KFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRC-FGFVNFENADA 266
Query: 348 AMKALKNTEKYEIDGQVLD 366
A +A++ E++G++ +
Sbjct: 267 AAQAVQ-----ELNGKIFN 280
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 105/393 (26%), Positives = 164/393 (41%), Gaps = 63/393 (16%)
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI------- 191
FC + G + +I SGE++GY FV F E A AI++LN + KK+
Sbjct: 143 FC-AFGNILSCKIAT-DPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVR 200
Query: 192 -----KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFA 246
S+ +++ N+ +D++++ K G + S +++D + ++R F
Sbjct: 201 KQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGT-ITSAVVMRD--SDGKSRCFG 257
Query: 247 FIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------------AESSAASQ 292
F+ + N A + Q+++ F +D V A ++ E + Q
Sbjct: 258 FVNFENADAAAQAVQELNGKIF--NDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQ 315
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
LY+KNL ++I ++L+ELFA +G IT + G R GFV F A +AL
Sbjct: 316 NTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVSRGS-GFVAFKSAEDANRAL 374
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT-YPPHLGYGM------VGGA 405
+ + L +LA+ + D+K +Q S + P P +G M V G
Sbjct: 375 TEMNGKMVGSKPLYVALAQRKEDRKAK--LQAQFSQMRPVAMAPSVGPRMPMFPPGVPGV 432
Query: 406 YGALGAGYVPAGFA---QPMVYG-RGAAPGGMAMLPML-------LPDGRIGYVLQQP-- 452
L G P F QP++ G R P M+PM+ P GR +QQP
Sbjct: 433 GQQLFYGQPPPAFINPQQPLMPGMRPGGPMPNFMMPMVQQGQQPQRPAGRRAGGMQQPMP 492
Query: 453 -GVQQHNPPPQPRSGRGGAGSSSSGGRRSTDNG 484
G QQ P RGG G GR D G
Sbjct: 493 MGGQQQVFP------RGGRGYRYPTGRGMPDPG 519
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 123/259 (47%), Gaps = 18/259 (6%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G+ +Y+G + S+ L IG V+ +R+ + + + GYA+V F E +AI
Sbjct: 37 GASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAI 96
Query: 179 EELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISI 230
E+LN +KGK + +Q ++I N+ + + + G ++S
Sbjct: 97 EQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFG-NILSC 155
Query: 231 ELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
++ D +RGF F+ + N + A + + + ++D V+ + S
Sbjct: 156 KVATDENGV--SRGFGFVHFENESDARDAIEAVDG--MLMNDQEVYVALHVSKKDRQSKL 211
Query: 291 SQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346
+VKA +YVKN+ ++ +Q+ +ELF +GKIT V+ G+ R +GFV+F + +
Sbjct: 212 EEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRG-FGFVNFEDHA 270
Query: 347 SAMKALKNTEKYEIDGQVL 365
+A KA+ + E GQ L
Sbjct: 271 AAAKAVDELNELEFKGQKL 289
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 118/278 (42%), Gaps = 35/278 (12%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+ + + L + G + ++ ++G ++G+ FV F + A AIE +
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVAT-DENGVSRGFGFVHFENESDARDAIEAV 186
Query: 182 NSCEL-------------KGKKIKCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+ + K ++ K +AK +++ N+ + +++ + K G +
Sbjct: 187 DGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGK-I 245
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR---- 283
S L KD + + RGF F+ + +HA A + +++ +FK V A +
Sbjct: 246 TSAVLEKDSEG--KLRGFGFVNFEDHAAAAKAVDELNELEFK--GQKLYVGRAQKKYERL 301
Query: 284 ----------NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
E A Q L+VKNL I ++LKE FA G IT + + G
Sbjct: 302 QELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNS 361
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
R +GFV F+ A KA+ + + G+ L ++A+
Sbjct: 362 RG-FGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 89/205 (43%), Gaps = 32/205 (15%)
Query: 70 VEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPH 129
E E + D ++ +D D + + + S KD + ++L + + VY+ I
Sbjct: 173 FENESDARDAIEAVDGMLMNDQEVYVALHVSKKD----RQSKLEEVKAKFTNVYVKNIDQ 228
Query: 130 DASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGK 189
+ S ++ G++T +++ G+ +G+ FV F A++A++ELN E KG+
Sbjct: 229 ETSQEEFEELFGKYGKITSA-VLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQ 287
Query: 190 KIKCSAAQAKH------------------------RLFIGNVPRNWGEDDMRKAVTKIGP 225
K+ AQ K+ LF+ N+ + ++ +++ G
Sbjct: 288 KLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGT 347
Query: 226 GVISIELVKDPQNANQNRGFAFIEY 250
+ S ++++D +RGF F+ +
Sbjct: 348 -ITSAKVMRD--ETGNSRGFGFVCF 369
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 124/259 (47%), Gaps = 25/259 (9%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D L +G V VR+ + +S ++ GYA+V + + A++A+E
Sbjct: 35 TSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALE 94
Query: 180 ELNSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN + GK I+ S +FI N+ ++ + G ++S +
Sbjct: 95 LLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFG-NILSCK 153
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN----APTVSWADPRNAES 287
+ DP + ++RG+ F+++ A+ + K++ ++D P V D N S
Sbjct: 154 IATDP--SGESRGYGFVQFEKDESAQSAIDKLNG--MLINDKKVFVGPFVRKQDRENVSS 209
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+ + +YVKNL +T D LKE+F +G IT V+ G+ R +GFV+F +
Sbjct: 210 NI--KFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRC-FGFVNFENADA 266
Query: 348 AMKALKNTEKYEIDGQVLD 366
A +A++ E++G++ +
Sbjct: 267 AAQAVQ-----ELNGKIFN 280
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 105/400 (26%), Positives = 168/400 (42%), Gaps = 71/400 (17%)
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI------- 191
FC + G + +I SGE++GY FV F E A AI++LN + KK+
Sbjct: 143 FC-AFGNILSCKIAT-DPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVR 200
Query: 192 -----KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFA 246
S+ +++ N+ +D++++ K G + S +++D + ++R F
Sbjct: 201 KQDRENVSSNIKFSNVYVKNLSDTVTDDELKEMFGKYGT-ITSAVVMRD--SDGKSRCFG 257
Query: 247 FIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------------AESSAASQ 292
F+ + N A + Q+++ F +D V A ++ E + Q
Sbjct: 258 FVNFENADAAAQAVQELNGKIF--NDKELYVGRAQKKSEREMELKEKFEKNVQEVAEKFQ 315
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
LY+KNL ++I ++L+ELFA +G IT + G R GFV F A +AL
Sbjct: 316 NTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVSRGS-GFVAFKSAEDANRAL 374
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKT---SGGSNSQKSALNPT-------YPP------- 395
+ + L +LA+ + D+K + S + A+ P+ +PP
Sbjct: 375 TEMNGKMVGSKPLYVALAQRKEDRKAKLQAQFSQMRPVAMAPSVGPRMPMFPPGVPGVGQ 434
Query: 396 HLGYGMVGGAYGALGAGYVPAGFAQPMVYG-RGAAPGGMAMLPML-------LPDGRIGY 447
L YG A+ AG+ F QP++ G R P M+PM+ P GR
Sbjct: 435 QLFYGQPPPAFINPQAGF---AFQQPLMPGMRPGGPMPNFMMPMVQQGQQPQRPAGRRAG 491
Query: 448 VLQQP---GVQQHNPPPQPRSGRGGAGSSSSGGRRSTDNG 484
+QQP G QQ P RGG G GR D G
Sbjct: 492 GMQQPMPMGGQQQVFP------RGGRGYRYPTGRGMPDPG 525
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 125/256 (48%), Gaps = 24/256 (9%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + +D L +G V VR+ + + + GY +V F + A++AI+
Sbjct: 36 TSLYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAIQ 95
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
ELN L GK I+ + HR +FI N+ + + + G ++
Sbjct: 96 ELNYIPLYGKPIRVMYS---HRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSVFG-NIV 151
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ D ++ Q++G+ F++Y N A+ + +K++ L+D V R S
Sbjct: 152 SCKVAVD--SSGQSKGYGFVQYANEESAQKAIEKLNG--MLLNDKQVYVGPFLRRQERDS 207
Query: 289 AASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAER 345
A++ K +YVKNL + T D LK F +GKIT V+ K G +S+ +GFV+F
Sbjct: 208 TANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV--MKDGDGKSKGFGFVNFENA 265
Query: 346 SSAMKALKNTEKYEID 361
A +A+++ ++ D
Sbjct: 266 DDAARAVESLNGHKFD 281
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 143/327 (43%), Gaps = 49/327 (14%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
I H A D F G + ++ SG++KGY FV + +E A +AIE+LN L
Sbjct: 135 IDHKALHDTFSVF----GNIVSCKVAV-DSSGQSKGYGFVQYANEESAQKAIEKLNGMLL 189
Query: 187 KGKKIKC-----------SAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
K++ +A + K +++ N+ + +DD++ A + G + S ++K
Sbjct: 190 NDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK-ITSAVVMK 248
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---------- 284
D +++GF F+ + N A + + ++ KF DD V A ++
Sbjct: 249 D--GDGKSKGFGFVNFENADDAARAVESLNGHKF--DDKEWYVGRAQKKSERETELRVRY 304
Query: 285 ----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFV 340
E++ Q LYVKNL I+ ++LKE+F+ G +T + G + GFV
Sbjct: 305 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSCKVMRDPNGTSKGS-GFV 363
Query: 341 HFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYG 400
F+ A +A+ I+ + L ++A+ + D++ S + A+ P+ P +
Sbjct: 364 AFSTPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRAQ-FSQVRPVAMQPSVGPRMPVY 422
Query: 401 MVGGAYGALGAGYVPAGFAQPMVYGRG 427
GG G Q M YG+G
Sbjct: 423 PPGG-----------PGIGQQMFYGQG 438
>gi|313212996|emb|CBY36886.1| unnamed protein product [Oikopleura dioica]
Length = 404
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 94/172 (54%), Gaps = 10/172 (5%)
Query: 193 CSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN 252
CS+ RLF+G +P++ ++++ + K+ V + + + N+NRGFAF+EY
Sbjct: 238 CSSVD-NCRLFVGGIPKSRKKEEIMHELKKVTDKVADVIVYPSAADKNKNRGFAFVEYET 296
Query: 253 HACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLK 311
H A +R+K+ + + +L N V WA+P + + +VK LYV+NL + +++ L+
Sbjct: 297 HKAAAMARRKLVSGRVQLWGNPIAVDWAEPEEDVDDDIMKEVKVLYVRNLLIETSEESLR 356
Query: 312 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 363
F+ +G++ +V ++ Y FVHF ER SA A+K +DG+
Sbjct: 357 AHFSQYGQVERV--------KKIRDYAFVHFVERESADAAVKAGCSQRLDGE 400
>gi|242077714|ref|XP_002448793.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
gi|241939976|gb|EES13121.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
Length = 1076
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 130/275 (47%), Gaps = 40/275 (14%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S VY+ +P + D L + G+VT ++ SG +KGY FV F A+ A+
Sbjct: 423 SNVYVQNLPLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAVI 482
Query: 180 ELNSCELKGKKIKCSA--------AQAKHR---------LFIGNVPRNWGEDDMRKAVTK 222
ELN C ++G+KI + A +R L++ N+P + + + +
Sbjct: 483 ELNGCLVEGRKILVRVRPPSSPVESHANNRTLKEIDMSNLYVCNIPSSMNKAKLVELFLP 542
Query: 223 IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK----------LDD 272
G I+ +V + N N ++G+ F+++ + CA + M+ + L
Sbjct: 543 FGR--ITHAMVVEQSN-NSSKGYGFVKFADSHCAAEAVAMMNGALIEGETISVRVAGLSP 599
Query: 273 NAPTVSWADPRNAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 330
+ + ++E +A+ ++ LYV NLP+ ++ D+L LF G+I +VV+
Sbjct: 600 SVSSSVSQHSPHSEINASPEINNCRLYVTNLPQTMSADKLVSLFMPFGQIDRVVM----- 654
Query: 331 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
+ Y FV +A+ +SA KALK+ + Y I+G+ L
Sbjct: 655 ---YAEYSFVLYADINSAAKALKHMDGYLIEGKRL 686
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 121/280 (43%), Gaps = 32/280 (11%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S++Y+ +P +D L G+VT V++M+ +G +KGY FV + + A+ AI
Sbjct: 319 SKLYVCNLPLLLHEDKLHDLFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIF 378
Query: 180 ELNSCELKGKKIKCSAA---------------QAKHRL---------FIGNVPRNWGEDD 215
+LN ++GKK++ A + H+L ++ N+P D
Sbjct: 379 QLNGHLIEGKKMEVRVAAVSSSGSNTSVQAISETDHQLTKEVDMSNVYVQNLPLLMNTDK 438
Query: 216 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN-----HACAEYSRQKMSNPKFKL 270
+ G V S ++ D + ++G+ F+++ + HA E + + K +
Sbjct: 439 LLNLFLPYGK-VTSAKVAMD-YTSGISKGYGFVKFSDPHDAAHAVIELNGCLVEGRKILV 496
Query: 271 DDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 330
P+ N + + LYV N+P + + +L ELF G+IT ++
Sbjct: 497 RVRPPSSPVESHANNRTLKEIDMSNLYVCNIPSSMNKAKLVELFLPFGRITHAMVVEQSN 556
Query: 331 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370
+ YGFV FA+ A +A+ I+G+ + +A
Sbjct: 557 NSSKG-YGFVKFADSHCAAEAVAMMNGALIEGETISVRVA 595
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 129/302 (42%), Gaps = 33/302 (10%)
Query: 93 EEMKVAESDKDDEKKKHAELLALPPH---------GSEVYLGGIPHDASDDDLRHFCKSI 143
E+ KV D+D K EL H G+ +++G +P + L
Sbjct: 193 EKRKVQSDDQDKHLCKRQELSFSSAHDEGKLKEGNGTNLFVGNLPPSLASHKLIELFLPF 252
Query: 144 GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA----- 198
G + + R++ +G +KGY FV + A++AI+ +N ++G+ ++ A A
Sbjct: 253 GRIVKSRVVDDCFTGSSKGYGFVQYSDPRYAAEAIKHMNGRMVEGRMLEVRLAGAPSSGS 312
Query: 199 -----KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN- 252
+L++ N+P ED + G V S+++++D ++G+ F+ Y +
Sbjct: 313 TKEMDMSKLYVCNLPLLLHEDKLHDLFVPYGQ-VTSVKVMRD-HATGLSKGYGFVRYSDP 370
Query: 253 ----HACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKA------LYVKNL 301
HA + + + K ++ A + S ++ A S Q+ +YV+NL
Sbjct: 371 QHAAHAIFQLNGHLIEGKKMEVRVAAVSSSGSNTSVQAISETDHQLTKEVDMSNVYVQNL 430
Query: 302 PKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEID 361
P + D+L LF +GK+T + YGFV F++ A A+ ++
Sbjct: 431 PLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAVIELNGCLVE 490
Query: 362 GQ 363
G+
Sbjct: 491 GR 492
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 115/289 (39%), Gaps = 57/289 (19%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+ +P S D L G++ V +M + Y+FV + A++A++ +
Sbjct: 625 LYVTNLPQTMSADKLVSLFMPFGQIDRV-VMYAE-------YSFVLYADINSAAKALKHM 676
Query: 182 NSCELKGKKI---------------KCSAAQAK-------HRLFIGNVPRNWGEDDMRKA 219
+ ++GK++ CS + +K L++G VP + + +
Sbjct: 677 DGYLIEGKRLVVKGSEPLPANAAQSACSQSGSKLVKEIDMANLYVGRVPSAVTCEQLVQI 736
Query: 220 VTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 279
G E+V Q + G+ I Y N + A + + +++ + V
Sbjct: 737 FCLYG------EIV---QAKKFDAGYGMIRYANASSAAAAIDHLDG--YQIGGSTLVVRV 785
Query: 280 ADPRNAESSAASQVKA---------------LYVKNLPKDITQDRLKELFAHHGKITKVV 324
A AES A+ + LYV LP +T D+L ELF G+IT+
Sbjct: 786 AG-LPAESDVATFARTPQTPGNEHRQIDMTNLYVGYLPPYVTTDKLIELFLPCGQITQAK 844
Query: 325 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373
+ K +GFV FA+ SA A+ + Y +DG +L A Q
Sbjct: 845 VVVDKFTGVSKGFGFVRFADAYSAATAITHMNGYPLDGHMLAVRTAGVQ 893
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 115/287 (40%), Gaps = 56/287 (19%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+ IP + L G +T +++ + + +KGY FV F A++A+
Sbjct: 520 SNLYVCNIPSSMNKAKLVELFLPFGRITHAMVVE-QSNNSSKGYGFVKFADSHCAAEAVA 578
Query: 180 ELNSCELKGKKIKCSAAQAKH------------------------RLFIGNVPRNWGEDD 215
+N ++G+ I A RL++ N+P+ D
Sbjct: 579 MMNGALIEGETISVRVAGLSPSVSSSVSQHSPHSEINASPEINNCRLYVTNLPQTMSADK 638
Query: 216 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 275
+ G I+ V ++F+ Y + A + + M + ++
Sbjct: 639 LVSLFMPFG----QIDRVV------MYAEYSFVLYADINSAAKALKHMDG--YLIEGKRL 686
Query: 276 TVSWADPR--NAESSAASQ----------VKALYVKNLPKDITQDRLKELFAHHGKITKV 323
V ++P NA SA SQ + LYV +P +T ++L ++F +G+I +
Sbjct: 687 VVKGSEPLPANAAQSACSQSGSKLVKEIDMANLYVGRVPSAVTCEQLVQIFCLYGEIVQ- 745
Query: 324 VIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370
AK + + YG + +A SSA A+ + + Y+I G L +A
Sbjct: 746 ----AK--KFDAGYGMIRYANASSAAAAIDHLDGYQIGGSTLVVRVA 786
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G +P + D L G++T+ +++ K +G +KG+ FV F A+ AI
Sbjct: 814 TNLYVGYLPPYVTTDKLIELFLPCGQITQAKVVVDKFTGVSKGFGFVRFADAYSAATAIT 873
Query: 180 ELNSCELKGKKIKCSAA 196
+N L G + A
Sbjct: 874 HMNGYPLDGHMLAVRTA 890
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 147/303 (48%), Gaps = 33/303 (10%)
Query: 86 QKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGE 145
Q H D+EM VA K + A L Y+G + D ++D L ++G
Sbjct: 50 QTHSGKDKEMNVAA------KYRMASL----------YVGDLHADVTEDLLFRKFSTVGP 93
Query: 146 VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--- 202
V +RI + + + + GYA+V F A +A++ +N +KGK I+ +Q L
Sbjct: 94 VLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDMIKGKSIRLMWSQRDAYLRRS 153
Query: 203 -----FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
FI N+ ++ + + + G ++S +++ D Q + +G+AF+ + N + A+
Sbjct: 154 GIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSKVMSDDQGS---KGYAFVHFQNQSAAD 209
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELF 314
+ ++M N K + + ++ E+ S AS+ +Y+KN D+ +RLK++F
Sbjct: 210 RAIEEM-NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVF 268
Query: 315 AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 374
+ +GK V + G+ + +GFV F +A KA++ +I+GQ++ A+ +
Sbjct: 269 SKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV 327
Query: 375 DQK 377
+++
Sbjct: 328 ERQ 330
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 123/270 (45%), Gaps = 38/270 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G++ ++M D +KGYAFV F+ + A +AIEE+
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 215
Query: 182 NSCELKGKKIKC--------------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N LKG K+ S A ++I N + ++ ++ +K G
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGK-T 274
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ D ++ +++GF F+ + +H A+ + ++M+ K++ A
Sbjct: 275 LSVKVMTD--SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 332
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E Q LY+KNL I ++L+ F+ G I++V + + GQ +
Sbjct: 333 LKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ-EEGQSKG 391
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
+G + F+ A KA+ E++G++L
Sbjct: 392 -FGLICFSSPEDATKAMT-----EMNGRIL 415
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G ++Y+ + D+ LR+ S G ++ V++M+ + G++KG+ + F + E A++A
Sbjct: 349 QGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKA 406
Query: 178 IEELNSCELKGKKIKCSAAQ 197
+ E+N L K + + AQ
Sbjct: 407 MTEMNGRILGSKPLSIALAQ 426
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 139/276 (50%), Gaps = 17/276 (6%)
Query: 113 LALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE 172
+A + +Y+G + D ++D L ++G V +RI + + + GYA+V F
Sbjct: 3 IAAKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLA 62
Query: 173 LASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIG 224
A +A++ +N +KGK I+ +Q L FI N+ ++ + + + G
Sbjct: 63 DAQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFG 122
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 284
++S +++ D Q + RG+AF+ + N A+ + ++M+ K D + + ++
Sbjct: 123 K-ILSSKVMSDDQGS---RGYAFVHFQNQIAADRAIEEMNGALLK-DCRLFVGRFKNRKD 177
Query: 285 AES---SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
E+ + A++ +Y+KN D+ +RLKE+F+ +GK V + G+ + +GFV
Sbjct: 178 REAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKG-FGFVS 236
Query: 342 FAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
F +A KA++ +I+GQ+L A+ +A+++
Sbjct: 237 FDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQ 272
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 125/273 (45%), Gaps = 44/273 (16%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G++ ++M D ++GYAFV F+ + A +AIEE+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSRGYAFVHFQNQIAADRAIEEM 157
Query: 182 N-----SCEL-----KGKKIKCSAAQAKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N C L K +K + + Q K F +N+G+D +++ +K G
Sbjct: 158 NGALLKDCRLFVGRFKNRKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGK-T 216
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++D + +++GF F+ + +H A+ + ++M+ K + A
Sbjct: 217 LSVKVMRDS--SGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAE 274
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E Q LY+KNL + I ++L+ F+ G I++V K QE
Sbjct: 275 LKQMFEQLKRERFRRCQGVKLYIKNLDETIDDEKLRREFSSFGSISRV-----KVMQEEG 329
Query: 336 R---YGFVHFAERSSAMKALKNTEKYEIDGQVL 365
R +G + F+ A KA+ E++G++L
Sbjct: 330 RSKGFGLICFSSPEEATKAMT-----EMNGRIL 357
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 29/171 (16%)
Query: 104 DEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGY 163
+ K + AEL + VY+ D D+ L+ G+ V++M+ SG++KG+
Sbjct: 174 NRKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRD-SSGKSKGF 232
Query: 164 AFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH----------------------- 200
FV+F + E A +A+EE+N ++ G+ + AQ K
Sbjct: 233 GFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKRERFRRCQG 292
Query: 201 -RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
+L+I N+ ++ +R+ + G SI VK Q +++GF I +
Sbjct: 293 VKLYIKNLDETIDDEKLRREFSSFG----SISRVKVMQEEGRSKGFGLICF 339
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G ++Y+ + D+ LR S G ++ V++M+ + G +KG+ + F + E A++A
Sbjct: 291 QGVKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQ--EEGRSKGFGLICFSSPEEATKA 348
Query: 178 IEELNSCELKGKKIKCSAAQ 197
+ E+N L K + + AQ
Sbjct: 349 MTEMNGRILGSKPLNIALAQ 368
>gi|308802151|ref|XP_003078389.1| Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) (ISS)
[Ostreococcus tauri]
gi|116056841|emb|CAL53130.1| Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) (ISS),
partial [Ostreococcus tauri]
Length = 430
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 123/254 (48%), Gaps = 23/254 (9%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTE---VRIMKGKDSGEAKGYAFVTFRTKELASQA 177
EV++G I +A++D +R K+ G T +M + +G+ +GYAF + E A++A
Sbjct: 152 EVFIGSISLEATEDAVRRALKACGAETGAVGFEMMTDRATGKHRGYAFARYGDPESAAKA 211
Query: 178 IEELNS--CELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK- 234
IE + S E+ G+KI+ S K R+F+G + ++ + +A+ G G+ EL +
Sbjct: 212 IETIESARVEIGGQKIRASVKPNKTRVFVGGIRKDATRAECVEALRARGAGLEFFELARP 271
Query: 235 -----DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL------DDNAPTVSWADPR 283
+ ++N G + YYN ACAE + M + KL D T SWA +
Sbjct: 272 KKKKEGVEQTDENGGHGWATYYNEACAERFMKNMREAEDKLPIANESDTRGMTTSWATVK 331
Query: 284 NAESSAASQVKALYVKNL-PKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHF 342
A ++ ++ L+V++L + T++ ++E F G I V + + +V F
Sbjct: 332 -ASAAKVQGIRTLHVRDLNSTNATEEAMRECFGRFGDIEDVQLRT----DREPHFAWVTF 386
Query: 343 AERSSAMKALKNTE 356
A + A KAL E
Sbjct: 387 ANPNDAEKALGECE 400
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 123/252 (48%), Gaps = 18/252 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + +D L +G+V VR+ + +G + GY +V + ++ A++AI+
Sbjct: 40 TSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAID 99
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN L K I+ S ++ +FI N+ ++ + + + G +IS +
Sbjct: 100 VLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFGT-IISCK 158
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D + Q++G+ F++Y + A+ + K++ ++D V + S S
Sbjct: 159 IATDA--SGQSKGYGFVQYDSEEAAQTAIDKLNG--MLMNDKQVYVGVFLRKQDRDSEMS 214
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
+ K +YVKNL ++D L++ F +G IT VV+ G+ + +GFV+F A
Sbjct: 215 KTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKC-FGFVNFENPEDAA 273
Query: 350 KALK--NTEKYE 359
KA+ N +K++
Sbjct: 274 KAVDALNGKKFD 285
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 146/339 (43%), Gaps = 50/339 (14%)
Query: 136 LRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSA 195
L S G + +I SG++KGY FV + ++E A AI++LN + K++
Sbjct: 144 LHETFSSFGTIISCKIATDA-SGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGV 202
Query: 196 AQAK------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNR 243
K + +++ N+ + EDD+RK + G + S+ +++D +++
Sbjct: 203 FLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGT-ITSVVVMRDADG--KSK 259
Query: 244 GFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---------AESSAASQVK 294
F F+ + N A + ++ KF DD V A ++ E + QV
Sbjct: 260 CFGFVNFENPEDAAKAVDALNGKKF--DDKEWYVGKAQKKSEREVELKSRFEQTVKEQVD 317
Query: 295 A-----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
LYVKNL I ++LKELF+ +G IT + G R GFV F+ A
Sbjct: 318 KYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGS-GFVAFSTPEEAS 376
Query: 350 KALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT-YPPHLGYGMVGGAYGA 408
+AL I + L +LA+ + +++ +Q S + P PP +G M + GA
Sbjct: 377 RALGEMNGKMIVSKPLYVALAQRKEERRAR--LQAQFSQMRPVAMPPSMGPRMPMYSPGA 434
Query: 409 LGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGY 447
G G Q + YG+ A P M+ P GY
Sbjct: 435 PGMG-------QQLFYGQ-APPA------MIAPQAGFGY 459
>gi|357122936|ref|XP_003563169.1| PREDICTED: uncharacterized protein LOC100842213 [Brachypodium
distachyon]
Length = 691
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 117/242 (48%), Gaps = 7/242 (2%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEA---KGYAFVTFRTKELASQA 177
EV++ G+P +A ++++ GEV EVR+++ D E KG+AFV F A A
Sbjct: 111 EVFVFGLPPEAVEENVAGALAEAGEVEEVRLVR--DPAEPQLNKGFAFVRFAEVWQARWA 168
Query: 178 IEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG-PGVISIELVKDP 236
++L + ++KGK L + N+ +W +DD+ + + + I L++ P
Sbjct: 169 ADDLRTAKIKGKACGICKNNDNETLHLRNICFDWSKDDLAENLKTFELENLEDINLIEHP 228
Query: 237 QNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL-DDNAPTVSWADPRNAESSAASQVKA 295
+NRG+AF+++ +H A K+ L D +S+++ + + +VK+
Sbjct: 229 DRKGKNRGYAFLDFSSHVDAVAGFLKLQKRDLYLGTDIKAQISFSNTISQDDKVMEKVKS 288
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
+++ LP +D ++E F G+I + + +R +GF+ F R +A+ +
Sbjct: 289 VFLDGLPPHWDEDDVREKFGKFGEIDNIQLARNMFTAKRKDFGFISFTTRQAAIDCIDMV 348
Query: 356 EK 357
K
Sbjct: 349 NK 350
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 147/303 (48%), Gaps = 33/303 (10%)
Query: 86 QKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGE 145
Q H D+EM VA K + A L Y+G + D ++D L ++G
Sbjct: 49 QTHSGKDKEMNVAA------KYRMASL----------YVGDLHADVTEDLLFRKFSTVGP 92
Query: 146 VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--- 202
V +RI + + + + GYA+V F A +A++ +N +KGK I+ +Q L
Sbjct: 93 VLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRS 152
Query: 203 -----FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
FI N+ ++ + + + G ++S +++ D Q + +G+AF+ + N + A+
Sbjct: 153 GIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSKVMSDDQGS---KGYAFVHFQNQSAAD 208
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELF 314
+ ++M N K + + ++ E+ S AS+ +Y+KN D+ +RLK++F
Sbjct: 209 RAIEEM-NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVF 267
Query: 315 AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 374
+ +GK V + G+ + +GFV F +A KA++ +I+GQ++ A+ +
Sbjct: 268 SKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV 326
Query: 375 DQK 377
+++
Sbjct: 327 ERQ 329
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 123/270 (45%), Gaps = 38/270 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G++ ++M D +KGYAFV F+ + A +AIEE+
Sbjct: 157 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 214
Query: 182 NSCELKGKKIKC--------------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N LKG K+ S A ++I N + ++ ++ +K G
Sbjct: 215 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGK-T 273
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ D ++ +++GF F+ + +H A+ + ++M+ K++ A
Sbjct: 274 LSVKVMTD--SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 331
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E Q LY+KNL I ++L+ F+ G I++V + + GQ +
Sbjct: 332 LKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ-EEGQSKG 390
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
+G + F+ A KA+ E++G++L
Sbjct: 391 -FGLICFSSPEDATKAMT-----EMNGRIL 414
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G ++Y+ + D+ LR+ S G ++ V++M+ + G++KG+ + F + E A++A
Sbjct: 348 QGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKA 405
Query: 178 IEELNSCELKGKKIKCSAAQ 197
+ E+N L K + + AQ
Sbjct: 406 MTEMNGRILGSKPLSIALAQ 425
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 136/269 (50%), Gaps = 17/269 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++D L ++G V +RI + + + GYA+V F A +A++
Sbjct: 10 ASLYVGDLSADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 180 ELNSCELKGKKIK--------CSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ C +FI N+ R+ + + + G ++S +
Sbjct: 70 TMNFDMIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGK-ILSSK 128
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES---S 288
++ D Q + +G+AF+ + N + A+ + ++M N K D + + ++ E+ +
Sbjct: 129 VMSDDQGS---KGYAFVHFQNQSAADRAIEEM-NGKLLKDCKVFVGRFKNRKDREAELRN 184
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
AS+ +Y+KN D+ +RL+E+F+ +GK V + G+ + +GFV F +A
Sbjct: 185 KASEFTNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKSKG-FGFVSFDNHEAA 243
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA++ +I+GQ++ A+ + +++
Sbjct: 244 QKAVEEMNGKDINGQLIFVGRAQKKVERQ 272
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 129/270 (47%), Gaps = 38/270 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G++ ++M D +KGYAFV F+ + A +AIEE+
Sbjct: 100 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 157
Query: 182 NSCELKGKKI--------KCSAAQAKHRL--FIGNVPRNWGED----DMRKAVTKIGPGV 227
N LK K+ K A+ +++ F +N+G+D +R+ +K G
Sbjct: 158 NGKLLKDCKVFVGRFKNRKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSKYGK-T 216
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ DP + +++GF F+ + NH A+ + ++M+ K++ A
Sbjct: 217 LSVKVMTDP--SGKSKGFGFVSFDNHEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQAE 274
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ + E Q LY+KNL I ++L++ F+ G I++V + + GQ +
Sbjct: 275 LKQMFEQQKRERIRKCQGVKLYIKNLDDTIDDEKLRKEFSSFGSISRVKVMQ-EEGQSKG 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
+G + F+ A KA+ E++GQ+L
Sbjct: 334 -FGLICFSSPEEATKAMT-----EMNGQIL 357
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 29/171 (16%)
Query: 104 DEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGY 163
+ K + AEL + VY+ D D+ LR G+ V++M SG++KG+
Sbjct: 174 NRKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDP-SGKSKGF 232
Query: 164 AFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------ 199
FV+F E A +A+EE+N ++ G+ I AQ K
Sbjct: 233 GFVSFDNHEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQQKRERIRKCQG 292
Query: 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
+L+I N+ ++ +RK + G SI VK Q Q++GF I +
Sbjct: 293 VKLYIKNLDDTIDDEKLRKEFSSFG----SISRVKVMQEEGQSKGFGLICF 339
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G ++Y+ + D+ LR S G ++ V++M+ + G++KG+ + F + E A++A
Sbjct: 291 QGVKLYIKNLDDTIDDEKLRKEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEEATKA 348
Query: 178 IEELNSCELKGKKIKCSAAQAKH 200
+ E+N L K + + +Q KH
Sbjct: 349 MTEMNGQILGSKPLNIALSQ-KH 370
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 136/269 (50%), Gaps = 17/269 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++D L ++G V +RI + + + GYA+V F A +A++
Sbjct: 10 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + + G ++S +
Sbjct: 70 TMNFDTIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 128
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES---S 288
++ D Q + RG+AF+ + N A+ + ++M+ K D + + ++ E+ +
Sbjct: 129 VMSDDQGS---RGYAFVHFQNQMAADRAIEEMNGALLK-DCRLFVGRFKNRQDREAELQN 184
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
A++ +Y+KN D+ RL+E+F+ +GK V + G+ + +GFV F +A
Sbjct: 185 KANEFTNIYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDSTGKSKG-FGFVSFYSHEAA 243
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA++ +I+GQ+L A+ +A+++
Sbjct: 244 QKAVEEMNGKDINGQLLFVGRAQKKAERQ 272
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 132/288 (45%), Gaps = 41/288 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G++ ++M D ++GYAFV F+ + A +AIEE+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSRGYAFVHFQNQMAADRAIEEM 157
Query: 182 N-----SCEL-----KGKKIKCSAAQAKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N C L K ++ + + Q K F +N+G+D + + +K G V
Sbjct: 158 NGALLKDCRLFVGRFKNRQDREAELQNKANEFTNIYIKNFGDDMDDKRLEEVFSKYGKTV 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
S++++ D +++GF F+ +Y+H A+ + ++M+ K + A
Sbjct: 218 -SVKVMTDS--TGKSKGFGFVSFYSHEAAQKAVEEMNGKDINGQLLFVGRAQKKAERQAE 274
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ + E Q LY+KNL I ++L+ F+ G I++V + + G+ +
Sbjct: 275 LKQMFEQQKQERFRRCQGVKLYIKNLDDTIDDEKLRREFSSFGSISRVKVMK-EEGRSKG 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLD---CSLAKPQADQKTSG 380
+G + F+ A +A+ E++G++L ++A Q+ Q+ G
Sbjct: 334 -FGLICFSSPEEATRAMT-----EMNGRILGSKPLNIALAQSLQQVXG 375
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G ++Y+ + D+ LR S G ++ V++MK + G +KG+ + F + E A++A
Sbjct: 291 QGVKLYIKNLDDTIDDEKLRREFSSFGSISRVKVMK--EEGRSKGFGLICFSSPEEATRA 348
Query: 178 IEELNSCELKGKKIKCSAAQA 198
+ E+N L K + + AQ+
Sbjct: 349 MTEMNGRILGSKPLNIALAQS 369
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 147/303 (48%), Gaps = 33/303 (10%)
Query: 86 QKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGE 145
Q H D+EM VA K + A L Y+G + D ++D L ++G
Sbjct: 50 QTHSGKDKEMNVAA------KYRMASL----------YVGDLHADVTEDLLFRKFSTVGP 93
Query: 146 VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--- 202
V +RI + + + + GYA+V F A +A++ +N +KGK I+ +Q L
Sbjct: 94 VLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRS 153
Query: 203 -----FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
FI N+ ++ + + + G ++S +++ D Q + +G+AF+ + N + A+
Sbjct: 154 GIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSKVMSDDQGS---KGYAFVHFQNQSAAD 209
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELF 314
+ ++M N K + + ++ E+ S AS+ +Y+KN D+ +RLK++F
Sbjct: 210 RAIEEM-NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVF 268
Query: 315 AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 374
+ +GK V + G+ + +GFV F +A KA++ +I+GQ++ A+ +
Sbjct: 269 SKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV 327
Query: 375 DQK 377
+++
Sbjct: 328 ERQ 330
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 123/270 (45%), Gaps = 38/270 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G++ ++M D +KGYAFV F+ + A +AIEE+
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 215
Query: 182 NSCELKGKKIKC--------------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N LKG K+ S A ++I N + ++ ++ +K G
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGK-T 274
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ D ++ +++GF F+ + +H A+ + ++M+ K++ A
Sbjct: 275 LSVKVMTD--SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 332
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E Q LY+KNL I ++L+ F+ G I++V + + GQ +
Sbjct: 333 LKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ-EEGQSKG 391
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
+G + F+ A KA+ E++G++L
Sbjct: 392 -FGLICFSSPEDATKAMT-----EMNGRIL 415
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G ++Y+ + D+ LR+ S G ++ V++M+ + G++KG+ + F + E A++A
Sbjct: 349 QGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKA 406
Query: 178 IEELNSCELKGKKIKCSAAQ 197
+ E+N L K + + AQ
Sbjct: 407 MTEMNGRILGSKPLSIALAQ 426
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 146/303 (48%), Gaps = 33/303 (10%)
Query: 86 QKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGE 145
Q H D EM VA K + A L Y+G + D ++D L ++G
Sbjct: 50 QTHSGKDREMNVAA------KYRMASL----------YVGDLHADVTEDLLFRKFSTVGP 93
Query: 146 VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--- 202
V +RI + + + + GYA+V F A +A++ +N +KGK I+ +Q L
Sbjct: 94 VLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRS 153
Query: 203 -----FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
FI N+ ++ + + + G ++S +++ D Q + +G+AF+ + N + A+
Sbjct: 154 GIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSKVMSDDQGS---KGYAFVHFQNQSAAD 209
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELF 314
+ ++M N K + + ++ E+ S AS+ +Y+KN D+ +RLK++F
Sbjct: 210 RAIEEM-NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVF 268
Query: 315 AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 374
+ +GK V + G+ + +GFV F +A KA++ +I+GQ++ A+ +
Sbjct: 269 SKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV 327
Query: 375 DQK 377
+++
Sbjct: 328 ERQ 330
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 123/270 (45%), Gaps = 38/270 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G++ ++M D +KGYAFV F+ + A +AIEE+
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 215
Query: 182 NSCELKGKKIKC--------------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N LKG K+ S A ++I N + ++ ++ +K G
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGK-T 274
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ D ++ +++GF F+ + +H A+ + ++M+ K++ A
Sbjct: 275 LSVKVMTD--SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 332
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E Q LY+KNL I ++L+ F+ G I++V + + GQ +
Sbjct: 333 LKQMFEQLKRERICGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ-EEGQSKG 391
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
+G + F+ A KA+ E++G++L
Sbjct: 392 -FGLICFSSPEDATKAMT-----EMNGRIL 415
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G ++Y+ + D+ LR+ S G ++ V++M+ + G++KG+ + F + E A++A
Sbjct: 349 QGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKA 406
Query: 178 IEELNSCELKGKKIKCSAAQ 197
+ E+N L K + + AQ
Sbjct: 407 MTEMNGRILGSKPLSIALAQ 426
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 147/303 (48%), Gaps = 33/303 (10%)
Query: 86 QKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGE 145
Q H D+EM VA K + A L Y+G + D ++D L ++G
Sbjct: 50 QTHSGKDKEMNVAA------KYRMASL----------YVGDLHADVTEDLLFRKFSTVGP 93
Query: 146 VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--- 202
V +RI + + + + GYA+V F A +A++ +N +KGK I+ +Q L
Sbjct: 94 VLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRS 153
Query: 203 -----FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
FI N+ ++ + + + G ++S +++ D Q + +G+AF+ + N + A+
Sbjct: 154 GIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSKVMSDDQGS---KGYAFVHFQNQSAAD 209
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELF 314
+ ++M N K + + ++ E+ S AS+ +Y+KN D+ +RLK++F
Sbjct: 210 RAIEEM-NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVF 268
Query: 315 AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 374
+ +GK V + G+ + +GFV F +A KA++ +I+GQ++ A+ +
Sbjct: 269 SKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV 327
Query: 375 DQK 377
+++
Sbjct: 328 ERQ 330
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 123/270 (45%), Gaps = 38/270 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G++ ++M D +KGYAFV F+ + A +AIEE+
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 215
Query: 182 NSCELKGKKIKC--------------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N LKG K+ S A ++I N + ++ ++ +K G
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGK-T 274
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ D ++ +++GF F+ + +H A+ + ++M+ K++ A
Sbjct: 275 LSVKVMTD--SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 332
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E Q LY+KNL I ++L+ F+ G I++V + + GQ +
Sbjct: 333 LKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ-EEGQSKG 391
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
+G + F+ A KA+ E++G++L
Sbjct: 392 -FGLICFSSPEDATKAMT-----EMNGRIL 415
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G ++Y+ + D+ LR+ S G ++ V++M+ + G++KG+ + F + E A++A
Sbjct: 349 QGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKA 406
Query: 178 IEELNSCELKGKKIKCSAAQ 197
+ E+N L K + + AQ
Sbjct: 407 MTEMNGRILGSKPLSIALAQ 426
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 123/264 (46%), Gaps = 18/264 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + ++ L IG V+ +R+ + + + GYA+V + A +A+E
Sbjct: 57 TSLYVGELDPTVTEAMLYEIFSMIGPVSSIRVCRDAVTRRSLGYAYVNYLNAADAERALE 116
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+LN +K K + +Q + +FI N+ + G ++S +
Sbjct: 117 QLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFG-DILSCK 175
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D A+ +G+ F+ Y AE + + ++ +L+D V PR +
Sbjct: 176 VAMDSTGAS--KGYGFVHYVTAESAEAAIKGVNG--MQLNDKVVFVGIHVPRRERQAKID 231
Query: 292 QVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+V+A LY+KNLP ++T + L E+F+ +G +T + + G+ R +GFV++ S
Sbjct: 232 EVRAHFTNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQADESGKHRG-FGFVNYENHES 290
Query: 348 AMKALKNTEKYEIDGQVLDCSLAK 371
A KA++ + G +L + A+
Sbjct: 291 ASKAVEALHDKDYKGNILYVARAQ 314
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 91/376 (24%), Positives = 151/376 (40%), Gaps = 49/376 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G++ ++ +G +KGY FV + T E A AI+ +
Sbjct: 147 IFIKNLDETIDNKALHDTFAAFGDILSCKVAM-DSTGASKGYGFVHYVTAESAEAAIKGV 205
Query: 182 NSCELKGKKIKCSA------AQAK--------HRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N +L K + QAK L+I N+P +++ + +K GP V
Sbjct: 206 NGMQLNDKVVFVGIHVPRRERQAKIDEVRAHFTNLYIKNLPTEVTTEELNEMFSKYGP-V 264
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR---- 283
S + D + ++RGF F+ Y NH A + + + + +K N V+ A R
Sbjct: 265 TSAAVQAD--ESGKHRGFGFVNYENHESASKAVEALHDKDYK--GNILYVARAQKRVERD 320
Query: 284 ----------NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
E++ Q LY+KNL + ++L+ F G IT + G
Sbjct: 321 AELRRAHEQQKYETTLKYQGVNLYIKNLDDEYDDEKLQAEFLPFGTITSCKVMKDDKGVS 380
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSG-GSNSQKSALNPT 392
R +GFV F+ A KA+ + + L SLA+ + +K SQ++ +
Sbjct: 381 RG-FGFVCFSAPDEATKAVAEMNGKMLGSKPLYVSLAQRKDVRKQQLEAQMSQRAQMRSQ 439
Query: 393 YPPHLGYGMVGGAYGAL--------GAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGR 444
G+ G YGA A Y P G + M Y P GM P P G+
Sbjct: 440 Q--IAAAGIPGAPYGAPPNQMYYGGAAAYPPPG--RGMAYPPNGMPAGMPPRPRYAPPGQ 495
Query: 445 IGYVLQQPGVQQHNPP 460
+ + PG + PP
Sbjct: 496 MP-PMGMPGAPHYQPP 510
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 89/185 (48%), Gaps = 11/185 (5%)
Query: 195 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHA 254
A+Q L++G + E + + + IGP V SI + +D ++ G+A++ Y N A
Sbjct: 52 ASQPNTSLYVGELDPTVTEAMLYEIFSMIGP-VSSIRVCRD-AVTRRSLGYAYVNYLNAA 109
Query: 255 CAEYSRQKMSNPKFKLDDNAPTVSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKE 312
AE + ++++ K + A + W+ DP ++ + +++KNL + I L +
Sbjct: 110 DAERALEQLNYSLIK--NKACRIMWSQRDPSLRKTGQGN----IFIKNLDETIDNKALHD 163
Query: 313 LFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372
FA G I + G + YGFVH+ SA A+K +++ +V+ + P
Sbjct: 164 TFAAFGDILSCKVAMDSTGASKG-YGFVHYVTAESAEAAIKGVNGMQLNDKVVFVGIHVP 222
Query: 373 QADQK 377
+ +++
Sbjct: 223 RRERQ 227
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Query: 58 EEVEVEEEVEEEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPP 117
E E + E + +++ +++ AQK + D E++ A E++K+ L
Sbjct: 286 ENHESASKAVEALHDKDYKGNILYVARAQKRVERDAELRRAH-----EQQKYETTLKY-- 338
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + + D+ L+ G +T ++MK D G ++G+ FV F + A++A
Sbjct: 339 QGVNLYIKNLDDEYDDEKLQAEFLPFGTITSCKVMK-DDKGVSRGFGFVCFSAPDEATKA 397
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N L K + S AQ K
Sbjct: 398 VAEMNGKMLGSKPLYVSLAQRK 419
>gi|298709522|emb|CBJ48537.1| conserved unknown protein (Partial) [Ectocarpus siliculosus]
Length = 579
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 126/282 (44%), Gaps = 33/282 (11%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIG-EVTEVRIMKGKDSG-EAKGYAFVTFRTKELA 174
P G E+++ +P A+++ ++ + G EV +R+M KD + G A V F+ ++ A
Sbjct: 247 PSGKEIFIDNLPPSATEETVKKVAEEQGGEVVSMRVMMTKDEEPKCAGLALVRFQNRDHA 306
Query: 175 SQAIEELNSCELKGKKIKCSAAQAKHRLFIGN---------------------------- 206
++A+E L +++ K++ ++ + LFIGN
Sbjct: 307 ARALERLPEIKMESNKLEARSSSNANTLFIGNLNKTWTKMDKQLLTARPSGNPNTLFIGG 366
Query: 207 VPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP 266
+ R W ++ + K K G+++ E+ D N N NRGF F + + + + K
Sbjct: 367 LNRTWKKETVLKEFEKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKD 426
Query: 267 KFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIP 326
K + +N + WA+ R + + +Y+ L + + + L++ F +G I KVV+
Sbjct: 427 KLTILENKVLIDWAETR---GNKQDDERGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVG 483
Query: 327 PAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCS 368
+R + ++++ +A +++ + G++ S
Sbjct: 484 NQVGTAQRKDFAIINYSAAEAAKTCIESMHGTDFMGKLTVTS 525
>gi|413954516|gb|AFW87165.1| hypothetical protein ZEAMMB73_979278 [Zea mays]
gi|414865260|tpg|DAA43817.1| TPA: hypothetical protein ZEAMMB73_808082 [Zea mays]
Length = 643
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 129/273 (47%), Gaps = 19/273 (6%)
Query: 115 LPPHGS--EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE 172
LPP GS +Y+G + + L + V VR+ + SG + GY +V F +++
Sbjct: 28 LPPLGSMASLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQ 87
Query: 173 LASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIG 224
A++A+E LN L GK I+ + + LF+ N+ N ++ + + G
Sbjct: 88 EATRALEALNFTPLIGKYIRVMFSNRDPSLRKSGRANLFVKNLEPNIDSKNLYEIFSSFG 147
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 284
++S ++ D +A Q++G+ F++Y AE + ++ L +N R
Sbjct: 148 -AILSCKVATD--SAGQSKGYGFVQYETEESAEAAINGLNG---MLANNRKMFVGLHMRR 201
Query: 285 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
+ + +Y+KNLP + ++D L++ FA G+IT V+ G + +GFV+F +
Sbjct: 202 RDREV--KFTNVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKC-FGFVNFKK 258
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A++A++ I + L A+ + ++K
Sbjct: 259 PEFAIEAVEKANGKAIGDKTLYVGRAQKKEERK 291
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/306 (20%), Positives = 125/306 (40%), Gaps = 40/306 (13%)
Query: 95 MKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG 154
++V S++D +K + +++ + + +L S G + ++
Sbjct: 106 IRVMFSNRDPSLRKSGR--------ANLFVKNLEPNIDSKNLYEIFSSFGAILSCKVAT- 156
Query: 155 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH-------RLFIGNV 207
+G++KGY FV + T+E A AI LN +K+ + ++I N+
Sbjct: 157 DSAGQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDREVKFTNVYIKNL 216
Query: 208 PRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 267
P + EDD+R+ G + S +++D A++ GF N E++ + +
Sbjct: 217 PTEFSEDDLRQEFAPFGE-ITSAVVMRDADGASKCFGFV-----NFKKPEFAIEAVEKAN 270
Query: 268 FK-LDDNAPTVSWADPRNAESSAASQVKA---------------LYVKNLPKDITQDRLK 311
K + D V A + E A + + LY+KN+ I + LK
Sbjct: 271 GKAIGDKTLYVGRAQ-KKEERKAELKTRFGRGRDNKVDKPNGINLYLKNIDDGINDEGLK 329
Query: 312 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
+LF G++ + G+ + GFV FA + +A+ + + L LA+
Sbjct: 330 KLFEEFGQVASCKVMVDARGRSKGS-GFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQ 388
Query: 372 PQADQK 377
P+ ++K
Sbjct: 389 PKEERK 394
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 91 GDEEMKVAESDKDDEKKKHAELLAL----------PPHGSEVYLGGIPHDASDDDLRHFC 140
GD+ + V + K +E+K AEL P+G +YL I +D+ L+
Sbjct: 275 GDKTLYVGRAQKKEERK--AELKTRFGRGRDNKVDKPNGINLYLKNIDDGINDEGLKKLF 332
Query: 141 KSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
+ G+V ++M G +KG FV+F T E +AI +N + K + AQ K
Sbjct: 333 EEFGQVASCKVMV-DARGRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQPK 390
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 128/266 (48%), Gaps = 25/266 (9%)
Query: 106 KKKHAELLALPPHGSE------VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGE 159
+ + A +A P GS +Y+G + D S+ +L IG+V +R+ + + +
Sbjct: 6 QAQQAPTIATPISGSSPYVAPSLYVGDLDPDVSESELYEVFNQIGQVVSIRVCRDLMTKK 65
Query: 160 AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVP 208
+ GYA+V + T + ASQA+E LN +KGK I+ + HR +FI N+
Sbjct: 66 SLGYAYVNYGTHQDASQALELLNFTLVKGKPIRIMYS---HRDPSIRKSGAANIFIKNLE 122
Query: 209 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 268
++ + + G ++S +V D +A ++G+ F+++ A+ + +K+ N
Sbjct: 123 KSIDNKALHDTFSAFGT-ILSCRVVMD--DAGNSKGYGFVQFEKEESAQIAIEKV-NGML 178
Query: 269 KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 328
D + + + +++ +YVKNL + T + L+++FA G I+ V+
Sbjct: 179 INDRQVSVAPFIRKQERDMASSKNFNNVYVKNLAEATTDEDLRKVFAGFGPISSAVVMRD 238
Query: 329 KPGQERSRYGFVHFAERSSAMKALKN 354
G+ + +GFV+F A A++N
Sbjct: 239 ADGKSKC-FGFVNFENVDDAANAVEN 263
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 85/365 (23%), Positives = 151/365 (41%), Gaps = 44/365 (12%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
+ +++ + + L + G + R++ D+G +KGY FV F +E A AI
Sbjct: 113 AANIFIKNLEKSIDNKALHDTFSAFGTILSCRVVM-DDAGNSKGYGFVQFEKEESAQIAI 171
Query: 179 EELNSCELKGKKIKCS-----------AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
E++N + +++ + +++ + +++ N+ ++D+RK GP +
Sbjct: 172 EKVNGMLINDRQVSVAPFIRKQERDMASSKNFNNVYVKNLAEATTDEDLRKVFAGFGP-I 230
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHAC--AEYSRQKMSNPKFKLDDNAPTVSWADPRNA 285
S +++D ++ GF E + A E K+ N K A S R A
Sbjct: 231 SSAVVMRDADGKSKCFGFVNFENVDDAANAVENLNGKLINEKEWYVGRAQKKS---EREA 287
Query: 286 ESSAA-SQVKA----------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 334
E A QV+ LY+KN+ I ++L+ELFA G +T + + GQ
Sbjct: 288 ELKAKFEQVRKEKEEKFQGVNLYLKNIDDSIDDEKLRELFAVFGTVTSCKVMKSPQGQSM 347
Query: 335 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYP 394
GFV F+ AM+A+ + + + L +LA+ + +++ +Q + + P
Sbjct: 348 GS-GFVTFSAPEEAMQAVNDMNGKMVGSKPLYVALAQRKEERRAR--LQAQFAQMQIVAP 404
Query: 395 PHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGV 454
+ G P G M YG+ APG LLP G+ QQP V
Sbjct: 405 NAPPMAPNPPSMYHPG----PQGMGHQMFYGQ-PAPG-------LLPSQANGFGYQQPMV 452
Query: 455 QQHNP 459
P
Sbjct: 453 PTMRP 457
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +YL I D+ LR G VT ++MK G++ G FVTF E A QA
Sbjct: 305 QGVNLYLKNIDDSIDDEKLRELFAVFGTVTSCKVMKSPQ-GQSMGSGFVTFSAPEEAMQA 363
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ ++N + K + + AQ K
Sbjct: 364 VNDMNGKMVGSKPLYVALAQRK 385
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 84/202 (41%), Gaps = 33/202 (16%)
Query: 69 EVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIP 128
+ E+EE + ++ ++ D ++ VA + E+ +A + + VY+ +
Sbjct: 160 QFEKEESAQIAIEKVNGM--LINDRQVSVAPFIRKQERD-----MASSKNFNNVYVKNLA 212
Query: 129 HDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG 188
+D+DLR G ++ +M+ D G++K + FV F + A+ A+E LN +
Sbjct: 213 EATTDEDLRKVFAGFGPISSAVVMRDAD-GKSKCFGFVNFENVDDAANAVENLNGKLINE 271
Query: 189 KKIKCSAAQAKH------------------------RLFIGNVPRNWGEDDMRKAVTKIG 224
K+ AQ K L++ N+ + ++ +R+ G
Sbjct: 272 KEWYVGRAQKKSEREAELKAKFEQVRKEKEEKFQGVNLYLKNIDDSIDDEKLRELFAVFG 331
Query: 225 PGVISIELVKDPQNANQNRGFA 246
V S +++K PQ + GF
Sbjct: 332 T-VTSCKVMKSPQGQSMGSGFV 352
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 135/269 (50%), Gaps = 17/269 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++D L ++G V +RI + + + GYA+V F A +A++
Sbjct: 109 ASLYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALD 168
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + + G ++S +
Sbjct: 169 TMNFDMIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 227
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
++ D Q + RG+AF+ + N A+ + ++M+ K D + + ++ E+ +
Sbjct: 228 VMSDDQGS---RGYAFVHFQNQNAADRAIEEMNGALLK-DCRLFVGRFKNRKDREAELQN 283
Query: 292 QVKAL---YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
+V YVKN D+ +RLKE+F+ +GK V + G+ + +GFV F +A
Sbjct: 284 KVNEFTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSKG-FGFVSFDSHEAA 342
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA++ +++GQ+L A+ +++++
Sbjct: 343 KKAVEEMNGKDVNGQLLFVGRAQKKSERQ 371
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 123/271 (45%), Gaps = 40/271 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G++ ++M D ++GYAFV F+ + A +AIEE+
Sbjct: 199 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSRGYAFVHFQNQNAADRAIEEM 256
Query: 182 NS-----CEL-----KGKKIKCSAAQAKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N C L K +K + + Q K F +N+G+D +++ +K G
Sbjct: 257 NGALLKDCRLFVGRFKNRKDREAELQNKVNEFTNVYVKNFGDDMDDERLKEVFSKYGK-T 315
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ D + +++GF F+ + +H A+ + ++M+ K + A
Sbjct: 316 LSVKVMTD--SGGKSKGFGFVSFDSHEAAKKAVEEMNGKDVNGQLLFVGRAQKKSERQAE 373
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E Q LY+KNL I ++L F+ G I++V I + RS
Sbjct: 374 LKQMFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLWREFSSFGSISRVKIMRE---EGRS 430
Query: 336 R-YGFVHFAERSSAMKALKNTEKYEIDGQVL 365
+ +G + F+ A KA+ E++G++L
Sbjct: 431 KGFGLICFSSPEEATKAMA-----EMNGRIL 456
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 19/179 (10%)
Query: 196 AQAKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN 252
+AK+R L++G++ + ED + K + +GP V+SI + +D ++ G+A++ +
Sbjct: 102 VEAKYRQASLYVGDLSADVTEDLLFKKFSAVGP-VLSIRICRDLVT-RRSLGYAYVNFLK 159
Query: 253 HACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKE 312
A A+ + M+ F + P R+A S + +++KNL K I L E
Sbjct: 160 LADAQKALDTMN---FDMIKGKPIRLMWSQRDAYLR-KSGIGNVFIKNLDKSIDNKTLYE 215
Query: 313 LFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEIDGQVL-DCSL 369
F+ GKI + G SR Y FVHF +++A +A++ E++G +L DC L
Sbjct: 216 HFSAFGKILSSKVMSDDQG---SRGYAFVHFQNQNAADRAIE-----EMNGALLKDCRL 266
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 29/171 (16%)
Query: 104 DEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGY 163
+ K + AEL + VY+ D D+ L+ G+ V++M G++KG+
Sbjct: 273 NRKDREAELQNKVNEFTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMT-DSGGKSKGF 331
Query: 164 AFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------ 199
FV+F + E A +A+EE+N ++ G+ + AQ K
Sbjct: 332 GFVSFDSHEAAKKAVEEMNGKDVNGQLLFVGRAQKKSERQAELKQMFEQLKQERFRRCQG 391
Query: 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
+L+I N+ ++ + + + G SI VK + +++GF I +
Sbjct: 392 MKLYIKNLDDTIDDEKLWREFSSFG----SISRVKIMREEGRSKGFGLICF 438
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G ++Y+ + D+ L S G ++ V+IM+ + G +KG+ + F + E A++A
Sbjct: 390 QGMKLYIKNLDDTIDDEKLWREFSSFGSISRVKIMR--EEGRSKGFGLICFSSPEEATKA 447
Query: 178 IEELNSCELKGKKIKCSAAQ 197
+ E+N L K + + AQ
Sbjct: 448 MAEMNGRILGSKPLYIALAQ 467
>gi|242004750|ref|XP_002423241.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506227|gb|EEB10503.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 487
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 106/201 (52%), Gaps = 4/201 (1%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PPHG+E+++ +P D + +L +IG + EVR + SG +GYAF+ + A
Sbjct: 23 PPHGTEIFIKNLPDDVFEIELFQIFSTIGRIYEVR-LPVHWSGINRGYAFIRYTKISEAD 81
Query: 176 QAIEELNSCELKGKK-IKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
AI+ + E++ K+ IK + RLF+ VP + ++++ + + V + +
Sbjct: 82 AAIKAFDMFEIRNKRTIKIERSVDNTRLFLSCVPNDKTSEEIQCDLLTVVDNVKKVYVYP 141
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMS-NPKFKLDDNAPTVSWADPR-NAESSAASQ 292
+N + RG+AF+E+ +H A +++ ++ + F L + +WA+P S
Sbjct: 142 TLENPSIFRGYAFVEFKSHRDAAIAKRILTPDVCFNLFEKKCIAAWANPLPFLNESILKT 201
Query: 293 VKALYVKNLPKDITQDRLKEL 313
+ L+++N+PK+I + +K++
Sbjct: 202 INILFIRNVPKEIKSNTIKKI 222
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
+++KNLP D+ + L ++F+ G+I +V +P G R Y F+ + + S A A+K
Sbjct: 29 IFIKNLPDDVFEIELFQIFSTIGRIYEVRLPVHWSGINRG-YAFIRYTKISEADAAIKAF 87
Query: 356 EKYEI 360
+ +EI
Sbjct: 88 DMFEI 92
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 137/269 (50%), Gaps = 17/269 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++D L ++G V +RI + + + + GYA+V F A +A++
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + + G ++S +
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 128
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES---S 288
++ D Q + +G+AF+ + N + A+ + ++M N K + + ++ E+ S
Sbjct: 129 VMSDDQGS---KGYAFVHFQNQSAADRAIEEM-NGKLLKGCKVFVGRFKNRKDREAELRS 184
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
AS+ +Y+KN D+ +RLK++F+ +GK V + G+ + +GFV F +A
Sbjct: 185 KASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAA 243
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA++ +I+GQ++ A+ + +++
Sbjct: 244 KKAVEEMNGRDINGQLIFVGRAQKKVERQ 272
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 122/270 (45%), Gaps = 38/270 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G++ ++M D +KGYAFV F+ + A +AIEE+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 157
Query: 182 NSCELKGKKIKC--------------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N LKG K+ S A ++I N + ++ ++ +K G
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGK-T 216
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ D + +++GF F+ + +H A+ + ++M+ K++ A
Sbjct: 217 LSVKVMTDS--SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 274
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E Q LY+KNL I ++L+ F+ G I++V + + GQ +
Sbjct: 275 LKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ-EEGQSKG 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
+G + F+ A KA+ E++G++L
Sbjct: 334 -FGLICFSSPEDATKAMT-----EMNGRIL 357
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 29/171 (16%)
Query: 104 DEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGY 163
+ K + AEL + + VY+ D D+ L+ G+ V++M SG++KG+
Sbjct: 174 NRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT-DSSGKSKGF 232
Query: 164 AFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------ 199
FV+F + E A +A+EE+N ++ G+ I AQ K
Sbjct: 233 GFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQG 292
Query: 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
+L+I N+ ++ +R + G SI VK Q Q++GF I +
Sbjct: 293 VKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF 339
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G ++Y+ + D+ LR+ S G ++ V++M+ + G++KG+ + F + E A++A
Sbjct: 291 QGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKA 348
Query: 178 IEELNSCELKGKKIKCSAAQ 197
+ E+N L K + + AQ
Sbjct: 349 MTEMNGRILGSKPLSIALAQ 368
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 137/269 (50%), Gaps = 17/269 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++D L ++G V +RI + + + + GYA+V F A +A++
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + + G ++S +
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 128
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES---S 288
++ D Q + +G+AF+ + N + A+ + ++M N K + + ++ E+ S
Sbjct: 129 VMSDDQGS---KGYAFVHFQNQSAADRAIEEM-NGKLLKGCKVFVGRFKNRKDREAELRS 184
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
AS+ +Y+KN D+ +RLK++F+ +GK V + G+ + +GFV F +A
Sbjct: 185 KASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAA 243
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA++ +I+GQ++ A+ + +++
Sbjct: 244 KKAVEEMNGRDINGQLIFVGRAQKKVERQ 272
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 122/270 (45%), Gaps = 38/270 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G++ ++M D +KGYAFV F+ + A +AIEE+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 157
Query: 182 NSCELKGKKIKC--------------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N LKG K+ S A ++I N + ++ ++ +K G
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGK-T 216
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ D + +++GF F+ + +H A+ + ++M+ K++ A
Sbjct: 217 LSVKVMTDS--SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 274
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E Q LY+KNL I ++L+ F+ G I++V + + GQ +
Sbjct: 275 LKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ-EEGQSKG 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
+G + F+ A KA+ E++G++L
Sbjct: 334 -FGLICFSSPEDATKAMT-----EMNGRIL 357
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 29/171 (16%)
Query: 104 DEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGY 163
+ K + AEL + + VY+ D D+ L+ G+ V++M SG++KG+
Sbjct: 174 NRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT-DSSGKSKGF 232
Query: 164 AFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------ 199
FV+F + E A +A+EE+N ++ G+ I AQ K
Sbjct: 233 GFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQG 292
Query: 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
+L+I N+ ++ +R + G SI VK Q Q++GF I +
Sbjct: 293 VKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF 339
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G ++Y+ + D+ LR+ S G ++ V++M+ + G++KG+ + F + E A++A
Sbjct: 291 QGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKA 348
Query: 178 IEELNSCELKGKKIKCSAAQ 197
+ E+N L K + + AQ
Sbjct: 349 MTEMNGRILGSKPLSIALAQ 368
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 147/303 (48%), Gaps = 33/303 (10%)
Query: 86 QKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGE 145
Q H D+EM VA K + A L Y+G + D ++D L ++G
Sbjct: 50 QTHSGKDKEMNVAA------KYRMASL----------YVGDLHADVTEDLLFRKFSTVGP 93
Query: 146 VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--- 202
V +RI + + + + GYA+V F A +A++ +N +KGK I+ +Q L
Sbjct: 94 VLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRS 153
Query: 203 -----FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
FI N+ ++ + + + G ++S +++ D Q + +G+AF+ + N + A+
Sbjct: 154 GIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSKVMSDDQGS---KGYAFVHFQNQSAAD 209
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELF 314
+ ++M N K + + ++ E+ S AS+ +Y+KN ++ +RLK++F
Sbjct: 210 RAIEEM-NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGEMDDERLKDVF 268
Query: 315 AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 374
+ +GK V + G+ + +GFV F +A KA++ +I+GQ++ A+ +
Sbjct: 269 SKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV 327
Query: 375 DQK 377
+++
Sbjct: 328 ERQ 330
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 122/270 (45%), Gaps = 38/270 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G++ ++M D +KGYAFV F+ + A +AIEE+
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 215
Query: 182 NSCELKGKKIKC--------------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N LKG K+ S A ++I N ++ ++ +K G
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGEMDDERLKDVFSKYGK-T 274
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ D ++ +++GF F+ + +H A+ + ++M+ K++ A
Sbjct: 275 LSVKVMTD--SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 332
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E Q LY+KNL I ++L+ F+ G I++V + + GQ +
Sbjct: 333 LKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ-EEGQSKG 391
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
+G + F+ A KA+ E++G++L
Sbjct: 392 -FGLICFSSPEDATKAMT-----EMNGRIL 415
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G ++Y+ + D+ LR+ S G ++ V++M+ + G++KG+ + F + E A++A
Sbjct: 349 QGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKA 406
Query: 178 IEELNSCELKGKKIKCSAAQ 197
+ E+N L K + + AQ
Sbjct: 407 MTEMNGRILGSKPLSIALAQ 426
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 129/255 (50%), Gaps = 17/255 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++D L +G V +RI + + + GYA+V F A +A++
Sbjct: 10 ASLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALD 69
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + + G ++S +
Sbjct: 70 TMNFDVVKGKAIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKSLYECFSAFGK-ILSSK 128
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES---S 288
++ D + + +G+AF+ + + + A+ + ++M N KF D + ++ E+ +
Sbjct: 129 VMSDDRGS---KGYAFVHFQSQSAADRAIEEM-NGKFLKDCKVFVGRFKSRKDREAELRN 184
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
AS+ +Y+KN D+ +RL+E+F+ +G+I V + G+ R +GFV F +A
Sbjct: 185 KASEFTNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTNSCGKSRG-FGFVSFDSHEAA 243
Query: 349 MKALKNTEKYEIDGQ 363
KA++ E++GQ
Sbjct: 244 RKAVEEMNGKEVNGQ 258
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 123/257 (47%), Gaps = 33/257 (12%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G++ ++M D +KGYAFV F+++ A +AIEE+
Sbjct: 100 VFIKNLDKSIDNKSLYECFSAFGKILSSKVMS--DDRGSKGYAFVHFQSQSAADRAIEEM 157
Query: 182 NSCELKGKKI--------KCSAAQAKHRL--FIGNVPRNWGED----DMRKAVTKIGPGV 227
N LK K+ K A+ +++ F +N+G+D +R+ + G +
Sbjct: 158 NGKFLKDCKVFVGRFKSRKDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSTYGR-I 216
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS------NPKF------KLDDNAP 275
+S++++ + ++RGF F+ + +H A + ++M+ P F K++ A
Sbjct: 217 LSVKVM--TNSCGKSRGFGFVSFDSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQAE 274
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E Q LY+KNL ++I ++L++ F+ G I++V + + GQ +
Sbjct: 275 LKQMFEQLKKERIRGCQGAKLYIKNLDENIDDEKLRKEFSSFGSISRVKVMQ-EEGQSKG 333
Query: 336 RYGFVHFAERSSAMKAL 352
+G + F+ A +A+
Sbjct: 334 -FGLICFSSSEDAARAM 349
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K + AEL + VY+ D D+ LR + G + V++M G+++G+ F
Sbjct: 176 KDREAELRNKASEFTNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTN-SCGKSRGFGF 234
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V+F + E A +A+EE+N E+ G+ I AQ K +
Sbjct: 235 VSFDSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQAELKQMFEQLKKERIRGCQGAK 294
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ N ++ +RK + G SI VK Q Q++GF I +
Sbjct: 295 LYIKNLDENIDDEKLRKEFSSFG----SISRVKVMQEEGQSKGFGLICF 339
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 127/268 (47%), Gaps = 18/268 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + +Y+G + ++ L IG V +R+ + + + GYA+V + + +
Sbjct: 60 PQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTQDGE 119
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+EELN +KG+ + +Q + +FI N+ + G +
Sbjct: 120 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 178
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ +D +N N ++G+ F+ Y A + + ++ L++ V + P+
Sbjct: 179 LSCKVAQD-ENGN-SKGYGFVHYETDEAAAQAIKHVNG--MLLNEKKVYVGYHIPKKDRQ 234
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S ++KA +YVKN+ ++T++ +ELFA +G++T + G+ R +GFV+F
Sbjct: 235 SKFEEMKANFTNVYVKNINHEVTEEEFRELFAKYGEVTSSSLARDNEGKSRG-FGFVNFT 293
Query: 344 ERSSAMKALKNTEKYEIDGQVLDCSLAK 371
+SA KA++ E GQ L A+
Sbjct: 294 THASAAKAVEELNGKEFRGQELYVGRAQ 321
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 101/424 (23%), Positives = 167/424 (39%), Gaps = 98/424 (23%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + ++G +KGY FV + T E A+QAI+ +
Sbjct: 154 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAAAQAIKHV 212
Query: 182 NSCELKGKKIKCSA------AQAKH--------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ Q+K +++ N+ E++ R+ K G V
Sbjct: 213 NGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNINHEVTEEEFRELFAKYGE-V 271
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D N ++RGF F+ + HA A + ++++ +F+ + V A ++
Sbjct: 272 TSSSLARD--NEGKSRGFGFVNFTTHASAAKAVEELNGKEFRGQEL--YVGRAQKKHERE 327
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI----PPAK 329
E + Q LY+KNL D+ D+L+++F+ G IT + PP
Sbjct: 328 EELRKSYEAARLEKANKYQGVNLYIKNLADDVDDDKLRQMFSEFGPITSAKVMRDAPPEP 387
Query: 330 P-GQERSR-------------------------------------YGFVHFAERSSAMKA 351
P G E + +GFV F+ A KA
Sbjct: 388 PAGSEGDKEGKDKENKKESEKEGEGEAAEKKTEKKVERKLGKSKGFGFVCFSNPDDATKA 447
Query: 352 LKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGA 411
+ + +DG+ L +LA+ + + +KS L + M A A
Sbjct: 448 VAEMNQRMVDGKPLYVALAQRK---------DVRKSQLEASIQARNQLRM---QQAAAQA 495
Query: 412 GYVPAGFAQ-PMVYGRGAAPGGMAMLP-----MLLPDGRIGYVLQQPGVQQHNPPPQPRS 465
G +P + Q P+ Y G PG LP M P G IG Q G PP +
Sbjct: 496 G-LPQQYMQAPVYYAPGQQPG---FLPPGGRGMPFPQGGIGMPAVQGGRPGQFPPYAQQG 551
Query: 466 GRGG 469
GRGG
Sbjct: 552 GRGG 555
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 29/158 (18%)
Query: 102 KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAK 161
K D + K E+ A + + VY+ I H+ ++++ R GEVT + + + G+++
Sbjct: 230 KKDRQSKFEEMKA---NFTNVYVKNINHEVTEEEFRELFAKYGEVTSSSLAR-DNEGKSR 285
Query: 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------------- 200
G+ FV F T A++A+EELN E +G+++ AQ KH
Sbjct: 286 GFGFVNFTTHASAAKAVEELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKY 345
Query: 201 ---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L+I N+ + +D +R+ ++ GP + S ++++D
Sbjct: 346 QGVNLYIKNLADDVDDDKLRQMFSEFGP-ITSAKVMRD 382
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 87/185 (47%), Gaps = 13/185 (7%)
Query: 197 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 256
Q+ L++G + + E + + ++IG V SI + +D ++ G+A++ Y +
Sbjct: 61 QSSASLYVGELDPSVTEAMLFELFSQIG-SVASIRVCRDAVT-RRSLGYAYVNYNSTQDG 118
Query: 257 EYSRQKMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKEL 313
E + ++++ + L P + W+ DP ++ + +++KNL I L +
Sbjct: 119 EKALEELN---YTLIKGRPCRIMWSQRDPALRKTGQGN----VFIKNLDVAIDNKALHDT 171
Query: 314 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373
FA G I + + G + YGFVH+ +A +A+K+ ++ + + P+
Sbjct: 172 FAAFGNILSCKVAQDENGNSKG-YGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPK 230
Query: 374 ADQKT 378
D+++
Sbjct: 231 KDRQS 235
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 128/275 (46%), Gaps = 18/275 (6%)
Query: 113 LALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE 172
+A P + +Y+G + +D L G+V VR+ + +S + GYA+V F
Sbjct: 30 VAQPLPTTSLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPM 89
Query: 173 LASQAIEELNSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG 224
A++A+E LN L K I+ S +FI N+ + + + G
Sbjct: 90 DAARALEMLNFVPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFG 149
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 284
++S ++ D + Q++GF F++Y E+++ M + L ++ P R
Sbjct: 150 -AILSCKVATD--DMGQSKGFGFVQYEKE---EFAQSAMKSLNGMLINDKPVYVGPFLRK 203
Query: 285 AE---SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
E S ++ ++VKNL + T++ L ++F+ +G IT V+ G+ R +GF++
Sbjct: 204 QERDNSFDKARFNNVFVKNLSESTTKEDLVKIFSEYGNITSAVVMVGTDGKSRC-FGFIN 262
Query: 342 FAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
F A++A++ +I+ + C A+ ++++
Sbjct: 263 FESPDDAVRAVEELNGKKINDKEWYCGRAQKKSER 297
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 90/423 (21%), Positives = 172/423 (40%), Gaps = 73/423 (17%)
Query: 92 DEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
++ ++V S++D ++ + +++ + + L + G + ++
Sbjct: 105 NKPIRVMYSNRDPSSRRSGS--------ANIFIKNLDKTIDNKTLHDTFSAFGAILSCKV 156
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------ 199
D G++KG+ FV + +E A A++ LN + K + K
Sbjct: 157 AT-DDMGQSKGFGFVQYEKEEFAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSFDKARF 215
Query: 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN-----HA 254
+ +F+ N+ + ++D+ K ++ G ++ +V ++R F FI + + A
Sbjct: 216 NNVFVKNLSESTTKEDLVKIFSEYGNITSAVVMVG---TDGKSRCFGFINFESPDDAVRA 272
Query: 255 CAEYSRQKMSNPKF-------KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQ 307
E + +K+++ ++ K + + +++ Q + LY+KNL I+
Sbjct: 273 VEELNGKKINDKEWYCGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGISD 332
Query: 308 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367
D+L+ELF+ GKIT + + G + GFV F+ R A +A+ + G+ L
Sbjct: 333 DQLRELFSTFGKITSCKVMRDQNGVSKGS-GFVAFSTREEASQAITEMNGKMLSGKPLYV 391
Query: 368 SLAKPQADQKTSGGSNSQKSALNPT------------YPP------HLGYGMVGGAYGAL 409
+ A+ + ++K +Q S + P YPP L YG
Sbjct: 392 AFAQRKEERKAM--LQAQFSQMRPVPITPSMTPRLPMYPPMAPLGQQLFYGQAPPPMMPP 449
Query: 410 GAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGG 469
G+ GF Q +V G P G M P+ + P VQQ P+P R G
Sbjct: 450 QPGF---GFQQQLV--PGMRPSGAHM-----PNYFV------PVVQQGQQGPRPGMRRSG 493
Query: 470 AGS 472
AGS
Sbjct: 494 AGS 496
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 136/287 (47%), Gaps = 31/287 (10%)
Query: 104 DEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGY 163
D K +HA L Y+G +P D ++D L +G V +RI + + + GY
Sbjct: 4 DAKYRHASL----------YVGDLPADVTEDMLFRKFNPVGPVLSIRICRDLVTRRSLGY 53
Query: 164 AFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDD 215
A+V F A + ++ +N ++GK I+ +Q L FI N+ R+
Sbjct: 54 AYVNFLNLADAQKVLDTMNFDMIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKM 113
Query: 216 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 275
+ + + G ++S +++ D + + RG+AF+ + + + A+ + ++M+ K N
Sbjct: 114 LYEHFSAFGK-ILSSKVMSDDKGS---RGYAFVHFQSQSAADRAIEEMNGALLK---NCR 166
Query: 276 TVSWADPRNAESSAASQVKA-----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 330
E A Q KA +Y+KN D+ +RLKE+F+ +GKI V +
Sbjct: 167 LFVGPFKNRKEREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSS 226
Query: 331 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
G+ + +GFV F +A +A++ +I GQ++ A+ +A+++
Sbjct: 227 GKSKG-FGFVSFDTHEAAQRAVEYMNGKDICGQMVFVGRAQKKAERQ 272
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 128/270 (47%), Gaps = 38/270 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G++ ++M D ++GYAFV F+++ A +AIEE+
Sbjct: 100 VFIKNLDRSIDNKMLYEHFSAFGKILSSKVMS--DDKGSRGYAFVHFQSQSAADRAIEEM 157
Query: 182 N-----SCEL-----KGKKIKCSAAQAKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N +C L K +K + + Q K F +N+G+D +++ ++ G +
Sbjct: 158 NGALLKNCRLFVGPFKNRKEREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSQYGK-I 216
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ D ++ +++GF F+ + H A+ + + M+ K + A
Sbjct: 217 VSVKVMTD--SSGKSKGFGFVSFDTHEAAQRAVEYMNGKDICGQMVFVGRAQKKAERQAE 274
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E + LY+KNL + I +++L+ F+ G +++V + + G+ +
Sbjct: 275 LKQMFEQLKRERFGRCRGVKLYIKNLDETIDEEQLRRAFSSFGSMSRVKVME-EEGRSKG 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
+G + F+ A KA+ E++GQVL
Sbjct: 334 -FGLICFSCPEEATKAMA-----EMNGQVL 357
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G ++Y+ + ++ LR S G ++ V++M+ + G +KG+ + F E A++A
Sbjct: 291 RGVKLYIKNLDETIDEEQLRRAFSSFGSMSRVKVME--EEGRSKGFGLICFSCPEEATKA 348
Query: 178 IEELNSCELKGKKIKCSAAQ 197
+ E+N L K I + AQ
Sbjct: 349 MAEMNGQVLGSKAINIALAQ 368
>gi|348666125|gb|EGZ05953.1| hypothetical protein PHYSODRAFT_348578 [Phytophthora sojae]
Length = 356
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 132/277 (47%), Gaps = 34/277 (12%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G VY+G + DL+ ++ G V +++ +G +KG VT+ T+E A AI
Sbjct: 88 GCRVYVGNLSWSIKWQDLKDHMQAAGPVELATVLE--SNGRSKGCGIVTYETEEAAQNAI 145
Query: 179 EELNSCELKGKKI---------KCSAAQAKH--RLFIGNVPRN--WGE--DDMRKAVTKI 223
LN EL G+KI SA + K R+++GN+ N W E D M+KA T
Sbjct: 146 ATLNDTELGGRKIFVREDREAQPVSAVKPKRGFRVYVGNLSWNVKWQELKDHMKKAGT-- 203
Query: 224 GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK------FKLDDNAP-- 275
V+ +++++P +++G +EY A + +++N + F +D P
Sbjct: 204 ---VVHADVLEEPN--GRSKGCGLVEYATQEEAAKAIAELNNTELEGRLIFVREDREPEG 258
Query: 276 -TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 334
++S R A + + + LYV NLP + +LK+LF G + + I G+ R
Sbjct: 259 GSISKFAKRAAAPRGSGEGRQLYVGNLPWETNWQQLKDLFRTVGDVERADIAEYPDGRSR 318
Query: 335 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
+G + + + A +A++ EI+G++++ L K
Sbjct: 319 G-FGIIRYTNAADAWQAIERLNGLEIEGRLIEVRLDK 354
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 117/246 (47%), Gaps = 20/246 (8%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D L +G V VR+ + +S ++ GYA+V + + A++A+E
Sbjct: 35 TSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALE 94
Query: 180 ELNSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN + GK I+ S +FI N+ ++ + G ++S +
Sbjct: 95 LLNFTPINGKPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFG-NILSCK 153
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN----APTVSWADPRNAES 287
+ DP + ++RG+ F+++ A+ + K++ ++D P V D N S
Sbjct: 154 IATDP--SGESRGYGFVQFEKDESAQSAIDKLNG--MLINDKKVFVGPFVRKQDRENVSS 209
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+ + +YVKNL +T D LKE+F +G IT V+ G+ R +GFV+F +
Sbjct: 210 NI--KFSNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRC-FGFVNFENADA 266
Query: 348 AMKALK 353
A +A++
Sbjct: 267 AAQAVQ 272
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S VY+ + +DD+L+ G +T +M+ D G+++ + FV F + A+QA++
Sbjct: 214 SNVYVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSD-GKSRCFGFVNFENADAAAQAVQ 272
Query: 180 ELN 182
ELN
Sbjct: 273 ELN 275
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 136/269 (50%), Gaps = 17/269 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G +P D +++ L ++G V +RI + + + GYA+V F A +A++
Sbjct: 10 ASLYVGDLPPDVTENMLFLKFSTVGTVLSIRICRDLVTRCSLGYAYVNFLHVADAQRALD 69
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N ++G+ I+ +Q L FI N+ ++ + + + G ++S +
Sbjct: 70 TMNFDVIQGQSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSVFGK-ILSSK 128
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES---S 288
++ D Q + RG+ F+ + N A A+ + ++M+ K D + + R+ E+ +
Sbjct: 129 VMCDDQGS---RGYGFVHFQNQAAADRAIEEMNGVLLK-DFRLFVGPFKNRRDREAELQN 184
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
AS+ +Y+KN ++ ++LKE F+H+GKI V + G+ + +GFV F +A
Sbjct: 185 KASEFTNIYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKSKG-FGFVSFDTHEAA 243
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+A+ EI GQ + A+ +A+++
Sbjct: 244 KRAVDIVNGREIFGQQVFVGRAQKKAERQ 272
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 29/171 (16%)
Query: 104 DEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGY 163
+ + + AEL + +Y+ + D+ L+ F G++ V++M SG++KG+
Sbjct: 174 NRRDREAELQNKASEFTNIYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMT-DSSGKSKGF 232
Query: 164 AFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------ 199
FV+F T E A +A++ +N E+ G+++ AQ K
Sbjct: 233 GFVSFDTHEAAKRAVDIVNGREIFGQQVFVGRAQKKAERQAELKQLFEQRKQERSWRVRG 292
Query: 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
++++ N+ E+ +RKA + G SI VK Q ++RGF I +
Sbjct: 293 TKIYVKNLDETIDEEKLRKAFSSFG----SIIRVKVMQEEGRSRGFGLICF 339
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 125/273 (45%), Gaps = 44/273 (16%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L G++ ++M D ++GY FV F+ + A +AIEE+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSVFGKILSSKVMC--DDQGSRGYGFVHFQNQAAADRAIEEM 157
Query: 182 NSCELKGKKIKC----------SAAQAKHRLFIGNVPRNWGE--DD--MRKAVTKIGPGV 227
N LK ++ + Q K F +N+G+ DD +++ + G +
Sbjct: 158 NGVLLKDFRLFVGPFKNRRDREAELQNKASEFTNIYIKNFGDEMDDEKLKEFFSHYGK-I 216
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYS------RQKMSNPKF------KLDDNAP 275
+S++++ D ++ +++GF F+ + H A+ + R+ F K + A
Sbjct: 217 VSVKVMTD--SSGKSKGFGFVSFDTHEAAKRAVDIVNGREIFGQQVFVGRAQKKAERQAE 274
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE-- 333
+ R E S + +YVKNL + I +++L++ F+ G I +V K QE
Sbjct: 275 LKQLFEQRKQERSWRVRGTKIYVKNLDETIDEEKLRKAFSSFGSIIRV-----KVMQEEG 329
Query: 334 RSR-YGFVHFAERSSAMKALKNTEKYEIDGQVL 365
RSR +G + F+ A +A+ E++G++L
Sbjct: 330 RSRGFGLICFSSPEEAARAMA-----EMNGRLL 357
Score = 42.0 bits (97), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Query: 71 EEEEETEDVVDG--IDAQKHYDGDEEMKV---AESDKDDEKKKHAELLALPPHGSEVYLG 125
E + D+V+G I Q+ + G + K AE + E++K + G+++Y+
Sbjct: 241 EAAKRAVDIVNGREIFGQQVFVGRAQKKAERQAELKQLFEQRKQER--SWRVRGTKIYVK 298
Query: 126 GIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE 185
+ ++ LR S G + V++M+ + G ++G+ + F + E A++A+ E+N
Sbjct: 299 NLDETIDEEKLRKAFSSFGSIIRVKVMQ--EEGRSRGFGLICFSSPEEAARAMAEMNGRL 356
Query: 186 LKGKKIKCSAAQ 197
L K + + AQ
Sbjct: 357 LGSKPVNIALAQ 368
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 122/261 (46%), Gaps = 20/261 (7%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
+ + +Y+G + ++ L SIG+V +R+ + + + GYA+V + + E +A
Sbjct: 45 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 104
Query: 178 IEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
+EELN +KGK + +Q + +FI N+ + G ++S
Sbjct: 105 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG-NILS 163
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSA 289
++ +D ++G+ F+ Y A + + ++ L++ V P+ S
Sbjct: 164 CKVAQDEH--GNSKGYGFVHYETAEAANNAIKHVNG--MLLNEKKVFVGHHIPKKERMSK 219
Query: 290 ASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAE 344
++KA +YVKN+ D+T D ++LF HG IT I A+ Q +SR +GFV++ +
Sbjct: 220 FEEMKANFTNIYVKNIDLDVTDDEFRDLFEKHGDITSASI--ARDDQGKSRGFGFVNYIK 277
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
+A A++ E GQ L
Sbjct: 278 HEAASVAVETLNDTEFHGQKL 298
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 98/230 (42%), Gaps = 30/230 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + H + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 137 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQ-DEHGNSKGYGFVHYETAEAANNAIKHV 195
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ K +A +++ N+ + +D+ R K G +
Sbjct: 196 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDDEFRDLFEKHG-DI 254
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
S + +D Q ++RGF F+ Y H A + + +++ +F K +
Sbjct: 255 TSASIARDDQG--KSRGFGFVNYIKHEAASVAVETLNDTEFHGQKLYVGRAQKKHEREEE 312
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
+ E + Q LY+KNL D+ ++L+++F G IT +
Sbjct: 313 LRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKV 362
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 84 DAQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCK 141
+A KH +G E KV +K++ ++ + + + +Y+ I D +DD+ R +
Sbjct: 190 NAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDDEFRDLFE 249
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G++T I + D G+++G+ FV + E AS A+E LN E G+K+ AQ KH
Sbjct: 250 KHGDITSASIAR-DDQGKSRGFGFVNYIKHEAASVAVETLNDTEFHGQKLYVGRAQKKH 307
>gi|221104585|ref|XP_002169901.1| PREDICTED: ELAV-like protein 2-like [Hydra magnipapillata]
Length = 339
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 142/320 (44%), Gaps = 38/320 (11%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + D++ IG V+ ++++ +G++ GYAF+ + T +LA +AI +L+ L
Sbjct: 21 LPQTFTQDEVSQMFARIGPVSNCKLIRNYTTGQSLGYAFIEYPTAQLAEEAINQLDGMTL 80
Query: 187 KGKKIKCSAAQ------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ KK+K S A+ +++ +P ED + G +I+ +++ D A+
Sbjct: 81 QDKKLKVSYARPSSTEIKNSNVYVAGLPSWVDEDRLLSLFAPFG-SIITHKILTDA--AS 137
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA---------------DPRNA 285
++RG F+ Y + AE + + M+ A V A P N+
Sbjct: 138 KSRGVGFVRYSLKSDAEKAIESMAGKVLPDSTTALIVKLAIPPASKQLAAAAAAAQPLNS 197
Query: 286 ESSAASQV---------KALYVKNLPKDITQDRLKELFAHHGKI--TKVVIPPAKPGQER 334
+ Q+ +YV L ++ L ELFA G I K++ AKP +
Sbjct: 198 IAGVPKQIVQYNPMSLSNPVYVYGLQPHHSELTLYELFAPFGGILNVKLIRDNAKPEKPC 257
Query: 335 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK-PQADQKTSGG-SNSQKSALNPT 392
YGFV+F ++ A+ A+ + DG++L S + Q Q T+ Q A P
Sbjct: 258 KGYGFVNFRKQDEALAAIATMHNHPYDGKILQVSFKQNKQLGQATAMNLLMHQGVASTPI 317
Query: 393 YPPHLGYGMVGGAYGALGAG 412
++ GM G YGA+G G
Sbjct: 318 PQNNISVGMNYG-YGAVGQG 336
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 146/303 (48%), Gaps = 33/303 (10%)
Query: 86 QKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGE 145
Q H D+EM VA K + A L Y+G + D ++D L + G
Sbjct: 118 QAHSGKDKEMSVAA------KYRMASL----------YVGDLHADVTEDLLFRKFSAAGP 161
Query: 146 VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--- 202
V +RI + + + + GYA+V F A +A++ +N +KGK I+ +Q L
Sbjct: 162 VLSIRICRDQVTRRSLGYAYVNFLQLTDAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRS 221
Query: 203 -----FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
FI N+ ++ + + + G ++S +++ D Q + +G+AF+ + N + A+
Sbjct: 222 GIGNVFIKNLDKSIDNKTLYEHFSGFGK-ILSSKVMSDDQGS---KGYAFVHFQNQSAAD 277
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELF 314
+ ++M N + + + ++ E+ S AS+ +Y+KN D+ +RLK++F
Sbjct: 278 RAIEEM-NGRLLKSCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVF 336
Query: 315 AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 374
+ +GK V + G+ + +GFV F +A KA++ +I+GQ++ A+ +
Sbjct: 337 SKYGKTLSVKVMTDSRGKSKG-FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKV 395
Query: 375 DQK 377
+++
Sbjct: 396 ERQ 398
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 123/270 (45%), Gaps = 38/270 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L G++ ++M D +KGYAFV F+ + A +AIEE+
Sbjct: 226 VFIKNLDKSIDNKTLYEHFSGFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 283
Query: 182 N-----SCE-----LKGKKIKCSAAQAKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N SC+ K +K + + ++K F +N+G D ++ +K G
Sbjct: 284 NGRLLKSCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGK-T 342
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ D + +++GF F+ + +H A+ + ++M+ K++ A
Sbjct: 343 LSVKVMTDSRG--KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 400
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E Q LYVKNL I ++L+ F+ G I +V + + GQ +
Sbjct: 401 LKQMFEQLKRERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQ-QEGQSKG 459
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
+GF+ F+ A KA+ E++G+ L
Sbjct: 460 -FGFICFSSLEDATKAM-----IEMNGRFL 483
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G ++Y+ + D+ LR+ S G + V++M+ G++KG+ F+ F + E A++A
Sbjct: 417 QGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQ--QEGQSKGFGFICFSSLEDATKA 474
Query: 178 IEELNSCELKGKKIKCSAAQA 198
+ E+N L K I + AQ+
Sbjct: 475 MIEMNGRFLGSKPISIALAQS 495
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 122/267 (45%), Gaps = 18/267 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 46 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 105
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KGK + +Q + +FI N+ + G ++
Sbjct: 106 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 164
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L+D V + S
Sbjct: 165 SCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDKKVFVGHHISKKDRQS 220
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +Y+KN+ +D+T++ +ELF G+IT + + G+ R +GFV+F+
Sbjct: 221 KFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRG-FGFVNFST 279
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAK 371
SA A+ + EI Q L A+
Sbjct: 280 HESAQAAVDEMNEKEIRTQKLYVGRAQ 306
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 101/232 (43%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 197
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ +K ++I N+ ++ E++ R+ K G +
Sbjct: 198 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGE-I 256
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D + ++RGF F+ + H A+ + +M+ + + V A ++
Sbjct: 257 TSATLSRDQEG--KSRGFGFVNFSTHESAQAAVDEMNEKEIRTQK--LYVGRAQKKHERE 312
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL D+ ++L+ELF +G IT +
Sbjct: 313 EELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKV 364
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 84 DAQKHYDG----DEEMKVAES-DKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRH 138
+A KH +G D+++ V K D + K E+ A + + VY+ I D ++++ R
Sbjct: 192 NAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA---NFTNVYIKNIDQDVTEEEFRE 248
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
+ GE+T + + ++ G+++G+ FV F T E A A++E+N E++ +K+ AQ
Sbjct: 249 LFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQK 307
Query: 199 KH 200
KH
Sbjct: 308 KH 309
>gi|313236676|emb|CBY11933.1| unnamed protein product [Oikopleura dioica]
Length = 1059
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 83/150 (55%), Gaps = 17/150 (11%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P G EV++G IP D +D++ + IG + E+R+M D G+ +G+ FV F + A
Sbjct: 68 IPTKGCEVFVGKIPRDLFEDEIFPVFEMIGPIYELRLMMDFD-GKNRGFCFVMFTERSHA 126
Query: 175 SQAIEELNSCEL-KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
QAI LN+ E+ KG+ + ++ RLF+G +P++ ++++ + K+
Sbjct: 127 RQAISRLNNFEIRKGRTLGVCSSVDNCRLFVGGIPKSRKKEEIMHELKKV---------- 176
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKM 263
N+NRGFAF+EY H A +R+K+
Sbjct: 177 -----TNKNRGFAFVEYETHKAAAMARRKL 201
>gi|255080002|ref|XP_002503581.1| predicted protein [Micromonas sp. RCC299]
gi|226518848|gb|ACO64839.1| predicted protein [Micromonas sp. RCC299]
Length = 597
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 122/250 (48%), Gaps = 16/250 (6%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
+ +Y G + + ++ L +IG V +R+ + + + GYA+V F+ A++AI
Sbjct: 19 ATSLYCGDLDSNCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGADAARAI 78
Query: 179 EELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISI 230
+ LN + GK I+ +Q +FI N+ + + ++ G ++S
Sbjct: 79 DVLNFNVVNGKPIRIMYSQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFSQFG-NIVSA 137
Query: 231 ELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA 290
++ D Q ++G+ F+++ A+ + K++ L+D V R
Sbjct: 138 KVAADGQGV--SKGYGFVQFAEQEAAQQAIDKVNG--MLLNDKQVYVGPFQRRGERGGGP 193
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAM 349
+ +YVKNL + + +D+LKE+F GK+T VVI K G+ +S+ +GFV F E +A
Sbjct: 194 TTFNNVYVKNLHESVDEDKLKEVFGAVGKLTSVVI--MKDGEGKSKGFGFVCFEESEAAS 251
Query: 350 KALKNTEKYE 359
+A++ + Y+
Sbjct: 252 EAVEKLDGYD 261
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 121/281 (43%), Gaps = 32/281 (11%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + + L G + ++ G +KGY FV F +E A QAI+++
Sbjct: 110 IFIKNLDKEIDNKALYDTFSQFGNIVSAKV-AADGQGVSKGYGFVQFAEQEAAQQAIDKV 168
Query: 182 NSCELKGKKIKCSAAQAK----------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
N L K++ Q + + +++ N+ + ED +++ +G + S+
Sbjct: 169 NGMLLNDKQVYVGPFQRRGERGGGPTTFNNVYVKNLHESVDEDKLKEVFGAVGK-LTSVV 227
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
++KD + +++GF F+ + A + +K+ K++D A V A + AE A
Sbjct: 228 IMKDGEG--KSKGFGFVCFEESEAASEAVEKLDGYD-KIEDKAWVVCRAQ-KKAEREAEL 283
Query: 292 QVKA---------------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 336
+ K LY+KNL + +L+ELFA G IT + G R
Sbjct: 284 KAKFDAERRERLEKMAGANLYIKNLEDTVDDAKLRELFAEFGTITSCRVMRDASGASRGS 343
Query: 337 YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
FV F+ A +A+ + L +LA+ + D++
Sbjct: 344 -AFVAFSSADEATRAVTEMNGKMAGTKPLYVALAQRKEDRR 383
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 29/160 (18%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + VY+ + +D L+ ++G++T V IMK + G++KG+ FV F E AS
Sbjct: 193 PTTFNNVYVKNLHESVDEDKLKEVFGAVGKLTSVVIMKDGE-GKSKGFGFVCFEESEAAS 251
Query: 176 QAIEELNS-----------CELKGKKIKCSAAQAKH--------------RLFIGNVPRN 210
+A+E+L+ C + K + + +AK L+I N+
Sbjct: 252 EAVEKLDGYDKIEDKAWVVCRAQKKAEREAELKAKFDAERRERLEKMAGANLYIKNLEDT 311
Query: 211 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
+ +R+ + G + S +++D A +RG AF+ +
Sbjct: 312 VDDAKLRELFAEFGT-ITSCRVMRDASGA--SRGSAFVAF 348
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 127/274 (46%), Gaps = 25/274 (9%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+G + D ++ L IG + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
+N +KG+ I+ + HR +FI N+ + + + G
Sbjct: 71 TMNFEVIKGQPIRIMWS---HRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFG---- 123
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---A 285
SI K N + +RGF F+ + H A+ + M+ L+D V R A
Sbjct: 124 SILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNG--MLLNDRKVFVGHFKSRQKREA 181
Query: 286 ESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
E A A +YVKNL ++ + RL++LF+ G + V + GQ R +GFV+F +
Sbjct: 182 ELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRG-FGFVNFEK 240
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A KA+ + E+ GQ+L A+ +A++++
Sbjct: 241 HEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQS 274
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 125/287 (43%), Gaps = 43/287 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + + L + G + +++ + ++G+ FV F T E A +AI +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTM 158
Query: 182 NSCELKGKKIKCSAAQAKHR--------------LFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L +K+ +++ + +++ N+ N E ++ ++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFG-NM 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
S+++++D + Q+RGF F+ + H A+ + M+ + + V A R
Sbjct: 218 QSVKVMRD--SNGQSRGFGFVNFEKHEEAQKAVDHMNGKE--VSGQLLYVGRAQKRAERQ 273
Query: 288 SAAS----QVKA----------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
S Q+K LYVKNL I +RLKE+F+ +G IT AK E
Sbjct: 274 SELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITS-----AKVMTE 328
Query: 334 RSR---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
S +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 329 SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERK 375
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV +K+ AEL A + +Y+ + + + L+ G + V++M+
Sbjct: 167 KVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDS 226
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
+ G+++G+ FV F E A +A++ +N E+ G+ + AQ +
Sbjct: 227 N-GQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKR 269
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 71 EEEEETEDVVDGID-------------AQKHYDGDEEMKVAESDKDDEKKKHAELLALPP 117
E+ EE + VD ++ AQK + E+K E++ +
Sbjct: 239 EKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQ------ 292
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + +D+ L+ + G +T ++M +S +KG+ FV F + E A++A
Sbjct: 293 -GVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMT--ESSHSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGTKPLYVALAQRK 371
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 127/259 (49%), Gaps = 21/259 (8%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
+P + +Y+G + + +D L +G+V VR+ + + + GY +V + + + A
Sbjct: 32 VPYMPTSLYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDA 91
Query: 175 SQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKI 223
++A++ LN K I+ + HR +FI N+ + + +
Sbjct: 92 ARALDILNFTPFNNKPIRIMYS---HRDPSIRKSGTGNIFIKNLDKTIDHKALHDTFSSF 148
Query: 224 GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 283
G ++S ++ D ++ Q+RG+ F+++ N A+ + K++ L+D V +
Sbjct: 149 G-NILSCKVATD--SSGQSRGYGFVQFDNEEAAQNAIDKLNG--MLLNDKQVYVGHFLRK 203
Query: 284 NAESSAAS-QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHF 342
+ SA++ + +YVKNL + T++ LK +F +G+IT VI G+ + +GFV+F
Sbjct: 204 HERDSASNKKFNNVYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDADGKSKC-FGFVNF 262
Query: 343 AERSSAMKALKNTEKYEID 361
+A KA+++ +ID
Sbjct: 263 ENTDAAAKAVESLNGKKID 281
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 89/356 (25%), Positives = 150/356 (42%), Gaps = 54/356 (15%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
I H A D F G + ++ SG+++GY FV F +E A AI++LN L
Sbjct: 136 IDHKALHDTFSSF----GNILSCKVAT-DSSGQSRGYGFVQFDNEEAAQNAIDKLNGMLL 190
Query: 187 KGKKIKCSAAQAKH-----------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
K++ KH +++ N+ + E+D++ + G + S +++D
Sbjct: 191 NDKQVYVGHFLRKHERDSASNKKFNNVYVKNLSESTTEEDLKNIFGEYGE-ITSAVIMRD 249
Query: 236 PQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN----------- 284
+++ F F+ + N A + + ++ K +DD V A ++
Sbjct: 250 ADG--KSKCFGFVNFENTDAAAKAVESLNGKK--IDDKEWYVGKAQKKSERELELKSQFE 305
Query: 285 ---AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
E+ Q LY+KNL I+ + LKELF+ G IT + G R GFV
Sbjct: 306 QSMKEAVDKYQGVNLYIKNLDDSISDENLKELFSDFGMITSCKVMRDPSGISRGS-GFVA 364
Query: 342 FAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT-YPPHLGYG 400
F+ A +AL + + L +LA+ + +++ +Q S + P P +G
Sbjct: 365 FSTPEEASRALAEMNGKMVVSKPLYVALAQRKEERRAR--LQAQFSQMRPVAMAPSVGPR 422
Query: 401 MVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQ-PGVQ 455
M + GA G G Q +YG+G M+P P G GY Q PG++
Sbjct: 423 MPIYSPGAPGMG-------QQFLYGQGPP----TMIP---PQGGFGYQQQLVPGIR 464
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 70/151 (46%), Gaps = 26/151 (17%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ VY+ + +++DL++ GE+T IM+ D G++K + FV F + A++A+E
Sbjct: 215 NNVYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDAD-GKSKCFGFVNFENTDAAAKAVE 273
Query: 180 ELNSCELKGKKIKCSAAQAKH------------------------RLFIGNVPRNWGEDD 215
LN ++ K+ AQ K L+I N+ + +++
Sbjct: 274 SLNGKKIDDKEWYVGKAQKKSERELELKSQFEQSMKEAVDKYQGVNLYIKNLDDSISDEN 333
Query: 216 MRKAVTKIGPGVISIELVKDPQNANQNRGFA 246
+++ + G + S ++++DP ++ GF
Sbjct: 334 LKELFSDFG-MITSCKVMRDPSGISRGSGFV 363
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 117/251 (46%), Gaps = 14/251 (5%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + +D L +G+V VR+ + + + GY +V + AS+A+E
Sbjct: 38 TSLYVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAME 97
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN + GK I+ + +FI N+ ++ + + G ++S +
Sbjct: 98 MLNFTPVNGKSIRVMYSHRDPTLRKSGSANIFIKNLDKSIDNKALHDTFSSFG-NILSCK 156
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA- 290
+ D + Q++G+ F++Y N A+ + K+ N D + + ES+
Sbjct: 157 IATD--SNGQSKGYGFVQYDNEESAQGAIDKL-NGMLMNDKQVYVGHFLRKQERESTTGM 213
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
++ + +YVKNL + T D LK++F G IT V+ G+ + +GF++F A K
Sbjct: 214 TKFQNVYVKNLSESTTDDELKKVFGEFGNITSAVVMRDADGKSKC-FGFINFETAEDAAK 272
Query: 351 ALKNTEKYEID 361
A+++ + D
Sbjct: 273 AVESLNGKKFD 283
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 147/355 (41%), Gaps = 50/355 (14%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +++ + + L S G + +I + G++KGY FV + +E A AI+
Sbjct: 126 ANIFIKNLDKSIDNKALHDTFSSFGNILSCKIATDSN-GQSKGYGFVQYDNEESAQGAID 184
Query: 180 ELNSCELKGKKI------------KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+LN + K++ + +++ N+ + +D+++K + G +
Sbjct: 185 KLNGMLMNDKQVYVGHFLRKQERESTTGMTKFQNVYVKNLSESTTDDELKKVFGEFG-NI 243
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S +++D +++ F FI + A + + ++ KF DD V A ++
Sbjct: 244 TSAVVMRDADG--KSKCFGFINFETAEDAAKAVESLNGKKF--DDKEWYVGKAQKKSERE 299
Query: 285 ------AESSAASQVKA-----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
E +A V LYVKNL I ++LKELF+ G IT + G
Sbjct: 300 QELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGIS 359
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT- 392
R GFV F+ A +AL I + L +LA+ + +++ +Q S L P
Sbjct: 360 RGS-GFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAK--LQAQFSQLRPVA 416
Query: 393 YPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGY 447
PP L M GA G G Q + YG+G AM+P P GY
Sbjct: 417 MPPSLAPRMPIYPPGAPGIG-------QQLFYGQGPP----AMIP---PQAGFGY 457
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 137/269 (50%), Gaps = 17/269 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++D L ++G V +RI + + + + GYA+V F A +A++
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADAQKALD 69
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + + G ++S +
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 128
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES---S 288
++ D Q + +G+AF+ + N + A+ + ++M N K + ++ E+ S
Sbjct: 129 VMSDDQGS---KGYAFVHFQNQSAADRAIEEM-NGKLLQGCKVFVGRFKSRKDREAELRS 184
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
AS+ +Y+KN D+ +RLK++F+ +GK V + G+ + +GFV F +A
Sbjct: 185 KASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAA 243
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA++ +I+GQ++ + A+ + +++
Sbjct: 244 KKAVEEMNGRDINGQLIFVARAQKKVERQ 272
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 125/270 (46%), Gaps = 38/270 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G++ ++M D +KGYAFV F+ + A +AIEE+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 157
Query: 182 NSCELKGKKIKC--------------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L+G K+ S A ++I N + ++ ++ +K G
Sbjct: 158 NGKLLQGCKVFVGRFKSRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGK-T 216
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM------------SNPKFKLDDNAP 275
+S++++ D + +++GF F+ + +H A+ + ++M + + K++ A
Sbjct: 217 LSVKVMTDS--SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAE 274
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E QV LYVKNL I ++L+ F+ G I++V + + GQ +
Sbjct: 275 LKQMFEQLKKERIRGCQVVKLYVKNLDDTIDDEKLRNEFSSFGSISRVKVMQ-EEGQSKG 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
+G + F+ A+KA+ E++G++L
Sbjct: 334 -FGLICFSSPEDALKAMT-----EMNGRIL 357
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K + AEL + + VY+ D D+ L+ G+ V++M SG++KG+ F
Sbjct: 176 KDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT-DSSGKSKGFGF 234
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V+F + E A +A+EE+N ++ G+ I + AQ K +
Sbjct: 235 VSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKKERIRGCQVVK 294
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L++ N+ ++ +R + G SI VK Q Q++GF I +
Sbjct: 295 LYVKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF 339
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
++Y+ + D+ LR+ S G ++ V++M+ + G++KG+ + F + E A +A+ E
Sbjct: 294 KLYVKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDALKAMTE 351
Query: 181 LNSCELKGKKIKCSAAQA 198
+N L K + + AQ
Sbjct: 352 MNGRILGSKPLSIALAQC 369
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 127/274 (46%), Gaps = 25/274 (9%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+G + D ++ L IG + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
+N +KG+ I+ + HR +FI N+ + + + G
Sbjct: 71 TMNFEVIKGQPIRIMWS---HRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFG---- 123
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---A 285
SI K N + +RGF F+ + H A+ + M+ L+D V R A
Sbjct: 124 SILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNG--MLLNDRKVFVGHFKSRQKREA 181
Query: 286 ESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
E A A +YVKNL ++ + RL++LF+ G + V + GQ R +GFV+F +
Sbjct: 182 ELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRG-FGFVNFEK 240
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A KA+ + E+ GQ+L A+ +A++++
Sbjct: 241 HEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQS 274
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 125/287 (43%), Gaps = 43/287 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + + L + G + +++ + ++G+ FV F T E A +AI +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTM 158
Query: 182 NSCELKGKKIKCSAAQAKHR--------------LFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L +K+ +++ + +++ N+ N E ++ ++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFG-NM 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
S+++++D + Q+RGF F+ + H A+ + M+ + + V A R
Sbjct: 218 QSVKVMRD--SNGQSRGFGFVNFEKHEEAQKAVDHMNGKE--VSGQLLYVGRAQKRAERQ 273
Query: 288 SAAS----QVKA----------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
S Q+K LYVKNL I +RLKE+F+ +G IT AK E
Sbjct: 274 SELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITS-----AKVMTE 328
Query: 334 RSR---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
S +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 329 SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERK 375
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV +K+ AEL A + +Y+ + + + L+ G + V++M+
Sbjct: 167 KVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDS 226
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
+ G+++G+ FV F E A +A++ +N E+ G+ + AQ +
Sbjct: 227 N-GQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKR 269
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 71 EEEEETEDVVDGID-------------AQKHYDGDEEMKVAESDKDDEKKKHAELLALPP 117
E+ EE + VD ++ AQK + E+K E++ +
Sbjct: 239 EKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQ------ 292
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + +D+ L+ + G +T ++M +S +KG+ FV F + E A++A
Sbjct: 293 -GVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMT--ESSHSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGTKPLYVALAQRK 371
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 134/269 (49%), Gaps = 17/269 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++D L ++G V +RI + + + GYA+V F A +A++
Sbjct: 203 ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVADAQKALD 262
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + + G ++S +
Sbjct: 263 TMNFDVIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSTFGK-ILSSK 321
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES---S 288
++ D Q + +G+AF+ + N + A+ + ++M+ K + + ++ ES +
Sbjct: 322 VMSDDQGS---KGYAFVHFQNQSAADRAIEEMNGTLLK-NCRVFVSRFKSRKDRESELKN 377
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
AS+ +Y+KN D+ RLKE+F+ +G V + G+ + +GFV FA +A
Sbjct: 378 KASEFTNVYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKSKG-FGFVSFASHEAA 436
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A++ +I+GQ++ A+ + +++
Sbjct: 437 KNAVEEMNGKDINGQLIFVGRAQKKIERQ 465
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 132/286 (46%), Gaps = 39/286 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G++ ++M D +KGYAFV F+ + A +AIEE+
Sbjct: 293 VFIKNLDKSIDNKTLYEHFSTFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 350
Query: 182 NSCELKGKKIKCSAAQA----------KHRLFIGNVPRNWGED--DMR--KAVTKIGPGV 227
N LK ++ S ++ K F +N+G+D DMR + +K G
Sbjct: 351 NGTLLKNCRVFVSRFKSRKDRESELKNKASEFTNVYIKNFGDDMDDMRLKEVFSKYGT-T 409
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ D ++ +++GF F+ + +H A+ + ++M+ K++ A
Sbjct: 410 LSVKVMTD--SSGKSKGFGFVSFASHEAAKNAVEEMNGKDINGQLIFVGRAQKKIERQAE 467
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E + LY+KNL I ++L++ FA G I++V K QE
Sbjct: 468 LKQMFEQLRQERFRRCRGVKLYIKNLDDTIDDEKLRKEFASFGSISRV-----KVMQEEG 522
Query: 336 R---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
R +G + F+ A+KA+ + + L+ +LA+ ++KT
Sbjct: 523 RSKGFGLICFSSHEEAIKAMTEMNGRILGSKPLNIALAQRNEERKT 568
Score = 42.0 bits (97), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G ++Y+ + D+ LR S G ++ V++M+ + G +KG+ + F + E A +A
Sbjct: 484 RGVKLYIKNLDDTIDDEKLRKEFASFGSISRVKVMQ--EEGRSKGFGLICFSSHEEAIKA 541
Query: 178 IEELNSCELKGKKIKCSAAQ 197
+ E+N L K + + AQ
Sbjct: 542 MTEMNGRILGSKPLNIALAQ 561
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 123/281 (43%), Gaps = 17/281 (6%)
Query: 97 VAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKD 156
AE+D D + A P + +Y+G + ++ L IG V +R+ +
Sbjct: 36 TAEADNDTAGPTPSSAAAHPQASASLYVGELDESVTEAMLFELFSQIGPVASIRVCRDAV 95
Query: 157 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVP 208
+ + GYA+V + + +A+EELN +K + + +Q + +FI N+
Sbjct: 96 TRRSLGYAYVNYNSTADGEKALEELNYTLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLD 155
Query: 209 RNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 268
+ G ++S ++ +D ++G+ F+ Y A+ + + ++
Sbjct: 156 AAIDNKALHDTFAAFG-NILSCKVAQDEHG--NSKGYGFVHYETDEAAQQAIKHVNG--M 210
Query: 269 KLDDNAPTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVV 324
L++ V P+ S ++KA +Y+KNL D+T D ++LF +G +T
Sbjct: 211 LLNEKKVYVGHHIPKKDRQSKFEEMKANYTNIYIKNLHADVTDDEFRKLFEQYGAVTSST 270
Query: 325 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
I + + +GF++F SA KA++ EI GQ L
Sbjct: 271 IARDQETGKSRGFGFINFTTHESAAKAVEELNSREIHGQEL 311
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Query: 85 AQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKS 142
A KH +G E KV +K + ++ + + + +Y+ + D +DD+ R +
Sbjct: 203 AIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANYTNIYIKNLHADVTDDEFRKLFEQ 262
Query: 143 IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G VT I + +++G+++G+ F+ F T E A++A+EELNS E+ G+++ AQ KH
Sbjct: 263 YGAVTSSTIARDQETGKSRGFGFINFTTHESAAKAVEELNSREIHGQELYVGRAQKKH 320
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 101/224 (45%), Gaps = 31/224 (13%)
Query: 130 DASDDD--LRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
DA+ D+ L + G + ++ + + G +KGY FV + T E A QAI+ +N L
Sbjct: 155 DAAIDNKALHDTFAAFGNILSCKVAQ-DEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLN 213
Query: 188 GKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
KK+ K +A + ++I N+ + +D+ RK + G V S +
Sbjct: 214 EKKVYVGHHIPKKDRQSKFEEMKANYTNIYIKNLHADVTDDEFRKLFEQYG-AVTSSTIA 272
Query: 234 KDPQNANQNRGFAFIEYYNH-----ACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
+D Q ++RGF FI + H A E + +++ + + +
Sbjct: 273 RD-QETGKSRGFGFINFTTHESAAKAVEELNSREIHGQELYVGRAQKKHEREEELRKSYE 331
Query: 289 AASQVKA-------LYVKNLPKDITQDRLKELFAHHGKITKVVI 325
AA Q KA LY+KNL ++ ++L+ELFA +G IT +
Sbjct: 332 AARQEKASKYVGVNLYIKNLDDEVDDEKLRELFAPYGPITSAKV 375
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 146/303 (48%), Gaps = 33/303 (10%)
Query: 86 QKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGE 145
Q H DEEM V + K + A L Y+G + D ++D L + G
Sbjct: 269 QAHSGQDEEMDV------EAKYRMASL----------YVGDLHADVTEDLLFRKFSAAGP 312
Query: 146 VTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRL--- 202
V +RI + + + + GYA+V F A +A++ +N ++GK I+ +Q L
Sbjct: 313 VLSIRICRDQLTRRSLGYAYVNFLHLADAQKALDTMNFDVIQGKSIRLMWSQRDAYLRRS 372
Query: 203 -----FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
FI N+ ++ + + + G ++S +++ D Q + +G+AF+ + N + A+
Sbjct: 373 GIGNVFIKNLDKSIDNKTLYEHFSAFGR-ILSSKVMSDDQGS---KGYAFVHFQNQSAAD 428
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAES---SAASQVKALYVKNLPKDITQDRLKELF 314
+ ++M N K + ++ E+ S AS+ +Y+KN D+ +RLK++F
Sbjct: 429 RAIEEM-NGKLLQGCKVFVGRFKSRQDREAELRSKASEFTNVYIKNFGGDMDDERLKDVF 487
Query: 315 AHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA 374
+ +GK V + G+ + +GFV F +A KA++ +I+GQ++ + A+ +
Sbjct: 488 SKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKV 546
Query: 375 DQK 377
+++
Sbjct: 547 ERQ 549
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 126/270 (46%), Gaps = 38/270 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++M D +KGYAFV F+ + A +AIEE+
Sbjct: 377 VFIKNLDKSIDNKTLYEHFSAFGRILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 434
Query: 182 NSCELKGKKIKC--------------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L+G K+ S A ++I N + ++ ++ +K G
Sbjct: 435 NGKLLQGCKVFVGRFKSRQDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGK-T 493
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM------------SNPKFKLDDNAP 275
+S++++ D ++ +++GF F+ + +H A+ + ++M + + K++ A
Sbjct: 494 LSVKVMTD--SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAE 551
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E QV LYVKNL I ++L++ F+ G I++V + + GQ +
Sbjct: 552 LKQMFEQLKNERIRGCQVVKLYVKNLDDTIDDEKLRKEFSSFGSISRVKVMQ-EEGQSKG 610
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
+G + F+ A+KA+ E++G++L
Sbjct: 611 -FGLICFSSPEDALKAMT-----EMNGRIL 634
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 29/167 (17%)
Query: 108 KHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVT 167
+ AEL + + VY+ D D+ L+ G+ V++M SG++KG+ FV+
Sbjct: 455 REAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT-DSSGKSKGFGFVS 513
Query: 168 FRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HRLF 203
F + E A +A+EE+N ++ G+ I + AQ K +L+
Sbjct: 514 FDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKNERIRGCQVVKLY 573
Query: 204 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
+ N+ ++ +RK + G SI VK Q Q++GF I +
Sbjct: 574 VKNLDDTIDDEKLRKEFSSFG----SISRVKVMQEEGQSKGFGLICF 616
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 61 EVEEEVEEEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGS 120
E ++ EE+ + ++ AQK + E+K +E+ + +++ L
Sbjct: 518 EAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKNERIRGCQVVKL----- 572
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
Y+ + D+ LR S G ++ V++M+ + G++KG+ + F + E A +A+ E
Sbjct: 573 --YVKNLDDTIDDEKLRKEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDALKAMTE 628
Query: 181 LNSCELKGKKIKCSAAQ 197
+N L K + + AQ
Sbjct: 629 MNGRILGSKPLSIALAQ 645
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 127/274 (46%), Gaps = 25/274 (9%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+G + D ++ L IG + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 SSLYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
+N +KG+ I+ + HR +FI N+ + + + G
Sbjct: 71 TMNFEVIKGQPIRIMWS---HRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFG---- 123
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---A 285
SI K N + +RGF F+ + H A+ + M+ L+D V R A
Sbjct: 124 SILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNG--MLLNDRKVFVGHFKSRQKREA 181
Query: 286 ESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
E A A +YVKNL ++ + RL++LF+ G + V + GQ R +GFV+F +
Sbjct: 182 ELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRG-FGFVNFEK 240
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A KA+ + E+ GQ+L A+ +A++++
Sbjct: 241 HEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQS 274
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 124/287 (43%), Gaps = 43/287 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + + L + G + +++ + ++G+ FV F T E A +AI +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTM 158
Query: 182 NSCELKGKKIKCSAAQAKHR--------------LFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L +K+ +++ + +++ N+ N E ++ ++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFG-NM 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
S+++++D Q+RGF F+ + H A+ + M+ + + V A R
Sbjct: 218 QSVKVMRDSNG--QSRGFGFVNFEKHEEAQKAVDHMNGKE--VSGQLLYVGRAQKRAERQ 273
Query: 288 SAAS----QVKA----------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
S Q+K LYVKNL I +RLKE+F+ +G VI AK E
Sbjct: 274 SELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLKEVFSTYG-----VITSAKVMTE 328
Query: 334 RSR---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
S +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 329 SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERK 375
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV +K+ AEL A + +Y+ + + + L+ G + V++M+
Sbjct: 167 KVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDS 226
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
+ G+++G+ FV F E A +A++ +N E+ G+ + AQ +
Sbjct: 227 N-GQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKR 269
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 22/143 (15%)
Query: 70 VEEEEETEDVVDGID-------------AQKHYDGDEEMKVAESDKDDEKKKHAELLALP 116
E+ EE + VD ++ AQK + E+K E++ +
Sbjct: 238 FEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQ----- 292
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
G +Y+ + +D+ L+ + G +T ++M +S +KG+ FV F + E A++
Sbjct: 293 --GVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMT--ESSHSKGFGFVCFSSPEEATK 348
Query: 177 AIEELNSCELKGKKIKCSAAQAK 199
A+ E+N + K + + AQ K
Sbjct: 349 AVTEMNGRIVGTKPLYVALAQRK 371
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 122/267 (45%), Gaps = 18/267 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 46 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 105
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KGK + +Q + +FI N+ + G ++
Sbjct: 106 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 164
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L+D V + S
Sbjct: 165 SCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDKKVFVGHHISKKDRQS 220
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +Y+KN+ +D+T++ +ELF G+IT + + G+ R +GFV+F+
Sbjct: 221 KFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRG-FGFVNFST 279
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAK 371
SA A+ + EI Q L A+
Sbjct: 280 HESAQAAVDEMNEKEIRTQKLYVGRAQ 306
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 101/232 (43%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 197
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ +K ++I N+ ++ E++ R+ K G +
Sbjct: 198 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGE-I 256
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D + ++RGF F+ + H A+ + +M+ + + V A ++
Sbjct: 257 TSATLSRDQEG--KSRGFGFVNFSTHESAQAAVDEMNEKEIRTQK--LYVGRAQKKHERE 312
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL D+ ++L+ELF +G IT +
Sbjct: 313 EELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKV 364
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 84 DAQKHYDG----DEEMKVAES-DKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRH 138
+A KH +G D+++ V K D + K E+ A + + VY+ I D ++++ R
Sbjct: 192 NAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA---NFTNVYIKNIDQDVTEEEFRE 248
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
+ GE+T + + ++ G+++G+ FV F T E A A++E+N E++ +K+ AQ
Sbjct: 249 LFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQK 307
Query: 199 KH 200
KH
Sbjct: 308 KH 309
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 125/262 (47%), Gaps = 16/262 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + A++ L IG V RI + + + GY +V F + A +A+E
Sbjct: 1 TSLYVGDLHPLATEALLYSKFSEIGTVLSARICRDLATRNSLGYGYVNFEEPKDAERALE 60
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN G+ I+ +Q K +FI N+ + + + + IG ++S +
Sbjct: 61 NLNYESFMGRPIRIMWSQRDPSLRKSGKGNIFIKNLDKTIDQKQLYDTFSFIG-KILSCK 119
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D ++G+ F+ + CAE + +K++ ++D V P + SA+
Sbjct: 120 IAMDEH--GNSKGYGFVHFEKEECAERAIEKING--MMINDRVVYVGKFIPSSDRKSASG 175
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
+++ +YVKN P D T ++L+++F+ G+I + G+ + +GFV F + A
Sbjct: 176 KLRFNNIYVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPEGKSKG-FGFVCFHDPDHAE 234
Query: 350 KALKNTEKYEIDGQVLDCSLAK 371
+A++ EI+G+ L S A+
Sbjct: 235 QAVRVMHGKEINGRALYASRAQ 256
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 125/262 (47%), Gaps = 34/262 (12%)
Query: 143 IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK------GKKIKCS-- 194
IG++ +I + G +KGY FV F +E A +AIE++N + GK I S
Sbjct: 112 IGKILSCKIAM-DEHGNSKGYGFVHFEKEECAERAIEKINGMMINDRVVYVGKFIPSSDR 170
Query: 195 -AAQAKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
+A K R +++ N P + ++ +R ++ G + S + K+P+ +++GF F+ +
Sbjct: 171 KSASGKLRFNNIYVKNFPPDTTDEKLRDMFSEFGE-IKSCCVEKNPEG--KSKGFGFVCF 227
Query: 251 YNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR---------NAESSAASQVKA------ 295
++ AE + + M + ++ A S A + E A ++
Sbjct: 228 HDPDHAEQAVRVMHGKE--INGRALYASRAQRKEERQEELKQRLEKQRAERLSKYVPGVN 285
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
LYVKNL +I +RLKE F+H+G IT + G+ + +GFV F + A +A+
Sbjct: 286 LYVKNLDDNIDDERLKEAFSHYGPITSAKVMTDANGRSKG-FGFVCFTQPEQAARAVTEM 344
Query: 356 EKYEIDGQVLDCSLAKPQADQK 377
+ + L +LA+ + D++
Sbjct: 345 NATLVGSKPLYVALAQRKEDRR 366
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 110/236 (46%), Gaps = 22/236 (9%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + HD +D L IG+V VRI + S ++ GY +V F A++A++
Sbjct: 24 TSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMD 83
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
LN L K I+ + HR +FI N+ R + + G ++
Sbjct: 84 VLNFTPLNNKPIRIMYS---HRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFG-NIL 139
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ D + ++G+ F+++ N A+ + K++ L+D V + +
Sbjct: 140 SCKIAMDA--SGLSKGYGFVQFENEESAQSAIDKLNG--MLLNDKPVYVGHFQRKQDRDN 195
Query: 289 AASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHF 342
A S K +YVKNL + +T D LK F +G IT V+ G+ + +GFV+F
Sbjct: 196 ALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKC-FGFVNF 250
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 88/352 (25%), Positives = 143/352 (40%), Gaps = 47/352 (13%)
Query: 126 GIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE 185
I H A D F G + +I SG +KGY FV F +E A AI++LN
Sbjct: 122 AIDHKALYDTFSIF----GNILSCKIAMDA-SGLSKGYGFVQFENEESAQSAIDKLNGML 176
Query: 186 LKGKKIKCSAAQAK------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
L K + Q K + +++ N+ + +DD++ + G + S ++
Sbjct: 177 LNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGEYG-TITSAVVM 235
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA----------DPR 283
+D +++ F F+ + N A + + ++ KF DD V A R
Sbjct: 236 RDVDG--KSKCFGFVNFENADAAAEAVEALNGKKF--DDKEWYVGKALKKYERELELKER 291
Query: 284 NAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
+ +S + K LY+KNL +T ++L ELF+ G +T I G R GF
Sbjct: 292 HEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGS-GF 350
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT---SGGSNSQKSALNPTYP-- 394
V F+ A +AL + G+ L + A+ + ++K + S + + P P
Sbjct: 351 VAFSTPEEATRALAEMNGKMVAGKPLYVAPAQKKEERKARLQAQFSQVRPVTMAPIAPRL 410
Query: 395 PHLGYGMVGGA----YGALGAGYVP-AGFAQPMVYGRGAAPGGMAMLPMLLP 441
P G+ G YG ++ AGF P G PGG M +P
Sbjct: 411 PFYPAGVPGMGQQIMYGQAPPAFISQAGFGYPQQLVPGMRPGGAPMPNFFMP 462
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 125/255 (49%), Gaps = 16/255 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+G + H+ ++ L + +V +R+ + + + GYA+V F + A+ A+E
Sbjct: 23 SSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAANAME 82
Query: 180 ELNSCELKGKKIKC-------SAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN L GK I+ S ++ H +FI N+ + +++ GP V+S +
Sbjct: 83 LLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFASFGP-VLSCK 141
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS--WADPRNAESSA 289
+ D N Q++G+ F+++ N A+ + +++ ++D V E++
Sbjct: 142 VAVD--NNGQSKGYGFVQFENEEAAQSAINRLNG--MLINDKEVFVGRFVRHQERIEATG 197
Query: 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
+ + +YVKNL + + + LK+ F+++G IT ++ + G+ + +GFV+F SA
Sbjct: 198 SPKFTNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKG-FGFVNFQSPDSAA 256
Query: 350 KALKNTEKYEIDGQV 364
A++ + +V
Sbjct: 257 AAVEKLNGTTFNDKV 271
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/362 (24%), Positives = 156/362 (43%), Gaps = 53/362 (14%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ V++ + + L+ S G V ++ ++G++KGY FV F +E A AI
Sbjct: 111 ANVFIKNLDTSIDNKALQETFASFGPVLSCKVAV-DNNGQSKGYGFVQFENEEAAQSAIN 169
Query: 180 ELNSCELKGK------------KIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
LN + K +I+ + + +++ N+ ++D++K + G +
Sbjct: 170 RLNGMLINDKEVFVGRFVRHQERIEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYG-SI 228
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWAD---PRN 284
S ++KD + +++GF F+ + + A + +K++ F +D V A R
Sbjct: 229 TSAIVMKD--QSGKSKGFGFVNFQSPDSAAAAVEKLNGTTF--NDKVWYVGRAQRKGERE 284
Query: 285 AE---------SSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
AE +S ++KA LY+KNL I ++LKELF+ G IT + + G
Sbjct: 285 AELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLS 344
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT---SGGSNSQKSALN 390
+ GFV F+ A +AL I + L ++A+ + ++K + + Q L+
Sbjct: 345 KGS-GFVAFSTPEEASRALNGMNGKMIGKKPLYVAVAQRREERKARLQAHFTQIQAPGLS 403
Query: 391 PTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAA------PGGMAMLPMLLPDGR 444
P + G+ G GA P Q + +G+G A P G LLP R
Sbjct: 404 P-----MPSGLPGYHPGA------PRLAPQQLFFGQGTAGMMPPQPAGYGFQQQLLPGMR 452
Query: 445 IG 446
G
Sbjct: 453 AG 454
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
P + VY+ + SD+DL+ F + G +T +MK + SG++KG+ FV F++ + A+
Sbjct: 199 PKFTNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQ-SGKSKGFGFVNFQSPDSAAA 257
Query: 177 AIEELNSCELKGKKIKCSAAQAK 199
A+E+LN K AQ K
Sbjct: 258 AVEKLNGTTFNDKVWYVGRAQRK 280
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 119/256 (46%), Gaps = 14/256 (5%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + ++ DL F IG V +R+ + + + GY +V F ++ +A+E
Sbjct: 52 ASLYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTKRSLGYGYVNFHSQAAGERALE 111
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
ELN E+KG + + +Q +FI N+ + + G V+S +
Sbjct: 112 ELNYAEIKGVRCRLMWSQRDPSLRRSGSGNIFIKNLDPAIENKTLHDTFSSFG-KVLSCK 170
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD--NAPTVSWADPRNAESSA 289
+ D +N N ++GF F+ Y + A+ + + ++ + P ++ D +
Sbjct: 171 VATD-ENGN-SKGFGFVHYESDEAAQAAIENINGMLLNGREIYVGPHLAKKDRESRFQEM 228
Query: 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
++VKN + T+D L+ELF +G IT + + G + +GFV+FAE A+
Sbjct: 229 IKNYTNVFVKNFDTESTEDELRELFESYGPITSIHLQVDSEGHNKG-FGFVNFAEHDDAV 287
Query: 350 KALKNTEKYEIDGQVL 365
KA++ E G+ L
Sbjct: 288 KAVEALNDKEYKGKPL 303
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 142/347 (40%), Gaps = 51/347 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L S G+V ++ ++G +KG+ FV + + E A AIE +
Sbjct: 142 IFIKNLDPAIENKTLHDTFSSFGKVLSCKVAT-DENGNSKGFGFVHYESDEAAQAAIENI 200
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L G++I AK +F+ N ED++R+ GP +
Sbjct: 201 NGMLLNGREIYVGPHLAKKDRESRFQEMIKNYTNVFVKNFDTESTEDELRELFESYGP-I 259
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
SI L D + N+GF F+ + H A + + +++ ++K V A +N
Sbjct: 260 TSIHLQVDSEG--HNKGFGFVNFAEHDDAVKAVEALNDKEYK--GKPLYVGRAQKKNERV 315
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
E Q L++KNL + I RL+E F G IT + + G+
Sbjct: 316 HELTKKYEADRLEKLQKYQSVNLFIKNLDESIDDARLEEEFKPFGTITSAKVMLDENGKS 375
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 393
R +GFV + A KA+ + + + L +LA+P+A +++ Q A N
Sbjct: 376 RG-FGFVCLSTPEEATKAISEMNQRMVANKPLYVALAQPKAIRRSQLAQQIQ--ARNQMR 432
Query: 394 PPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGR--GAAPGGMAMLPM 438
G G +P F QP+ YG+ G P G + PM
Sbjct: 433 MQQQA-----------GPG-IPNQFVQPIFYGQQPGMLPPGARVPPM 467
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 102 KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAK 161
K D + + E++ + + V++ ++++D+LR +S G +T + ++ G K
Sbjct: 218 KKDRESRFQEMIK---NYTNVFVKNFDTESTEDELRELFESYGPITSIH-LQVDSEGHNK 273
Query: 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G+ FV F + A +A+E LN E KGK + AQ K+
Sbjct: 274 GFGFVNFAEHDDAVKAVEALNDKEYKGKPLYVGRAQKKN 312
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 12/135 (8%)
Query: 75 ETEDVVDGIDA--QKHYDGDEEMKVAESDKDDE------KKKHAELL-ALPPHGS-EVYL 124
E +D V ++A K Y G + + V + K +E KK A+ L L + S +++
Sbjct: 282 EHDDAVKAVEALNDKEYKG-KPLYVGRAQKKNERVHELTKKYEADRLEKLQKYQSVNLFI 340
Query: 125 GGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSC 184
+ D L K G +T ++M ++G+++G+ FV T E A++AI E+N
Sbjct: 341 KNLDESIDDARLEEEFKPFGTITSAKVML-DENGKSRGFGFVCLSTPEEATKAISEMNQR 399
Query: 185 ELKGKKIKCSAAQAK 199
+ K + + AQ K
Sbjct: 400 MVANKPLYVALAQPK 414
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 274 APTVSWADPRNAESSAASQVKA-LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 332
A + A+ N S+ AS+ A LYV L +T+ L E F+ G + + + +
Sbjct: 31 ATSTEAAEESNESSTQASETLASLYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTK 90
Query: 333 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD--QKTSGGSNSQKSALN 390
YG+V+F +++ +AL+ EI G + C L Q D + SG N L+
Sbjct: 91 RSLGYGYVNFHSQAAGERALEELNYAEIKG--VRCRLMWSQRDPSLRRSGSGNIFIKNLD 148
Query: 391 P 391
P
Sbjct: 149 P 149
>gi|358058232|dbj|GAA95909.1| hypothetical protein E5Q_02567 [Mixia osmundae IAM 14324]
Length = 614
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 114/238 (47%), Gaps = 12/238 (5%)
Query: 143 IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ---AK 199
IG V +R+ + + + GYA+V F +A+E+LN +KGK + +Q A
Sbjct: 2 IGSVASIRVCRDAVTRRSLGYAYVNFMNAADGERALEQLNYTPIKGKPCRIMWSQRDPAL 61
Query: 200 HRLFIGNV-PRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN-QNRGFAFIEYYNHACAE 257
+ +GN+ +N E KA+ +I K + N ++G+ F+ Y AE
Sbjct: 62 RKTSLGNIFIKNLDESIDNKALHDTFAAFGNILSCKVALDENGLSKGYGFVHYEGGEAAE 121
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKEL 313
+ Q ++ L+D V PR + +V++ LYVK L +I++ EL
Sbjct: 122 AAIQAVNG--MLLNDKVVYVGHHVPRRERQAKIDEVRSNYTNLYVKGLAPEISEAEFSEL 179
Query: 314 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
FA +G++T V+ + G+ + +GFV+FA+ +A KAL E GQ L S A+
Sbjct: 180 FAKYGQVTSAVLQVDQDGKSKG-FGFVNFADHEAAAKALTELHDSEHKGQTLYVSRAQ 236
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 108/278 (38%), Gaps = 35/278 (12%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + ++ ++G +KGY FV + E A AI+ +
Sbjct: 69 IFIKNLDESIDNKALHDTFAAFGNILSCKVAL-DENGLSKGYGFVHYEGGEAAEAAIQAV 127
Query: 182 NSCELKGKKIKCS------AAQAK--------HRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L K + QAK L++ + E + + K G V
Sbjct: 128 NGMLLNDKVVYVGHHVPRRERQAKIDEVRSNYTNLYVKGLAPEISEAEFSELFAKYGQ-V 186
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR---- 283
S L D +++GF F+ + +H A + ++ + + K VS A +
Sbjct: 187 TSAVLQVD--QDGKSKGFGFVNFADHEAAAKALTELHDSEHK--GQTLYVSRAQKKGERE 242
Query: 284 ----------NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
+ S Q LYVKNL D+ ++++ FA G IT I + G
Sbjct: 243 EELKKSYEQQKYDKSLKYQGVNLYVKNLEDDMDEEKVTAEFAAFGTITSTKIMRDEKGAS 302
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
+ +GFV F+ A KA+ + L SLA+
Sbjct: 303 KG-FGFVCFSSPDEATKAVTELNGKMFGQKPLYVSLAQ 339
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 28/155 (18%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+ G+ + S+ + G+VT + +D G++KG+ FV F E A++A+
Sbjct: 160 TNLYVKGLAPEISEAEFSELFAKYGQVTSAVLQVDQD-GKSKGFGFVNFADHEAAAKALT 218
Query: 180 ELNSCELKGKKIKCSAAQAKH------------------------RLFIGNVPRNWGEDD 215
EL+ E KG+ + S AQ K L++ N+ + E+
Sbjct: 219 ELHDSEHKGQTLYVSRAQKKGEREEELKKSYEQQKYDKSLKYQGVNLYVKNLEDDMDEEK 278
Query: 216 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
+ G + S ++++D + A ++GF F+ +
Sbjct: 279 VTAEFAAFGT-ITSTKIMRDEKGA--SKGFGFVCF 310
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 8/115 (6%)
Query: 85 AQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIG 144
AQK + +EE+K K E++K+ + +L G +Y+ + D ++ + + G
Sbjct: 235 AQKKGEREEELK-----KSYEQQKYDK--SLKYQGVNLYVKNLEDDMDEEKVTAEFAAFG 287
Query: 145 EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
+T +IM+ + G +KG+ FV F + + A++A+ ELN K + S AQ K
Sbjct: 288 TITSTKIMR-DEKGASKGFGFVCFSSPDEATKAVTELNGKMFGQKPLYVSLAQRK 341
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 126/261 (48%), Gaps = 29/261 (11%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + +D L +G+V VR+ + + + GY +V F + + A++AI+
Sbjct: 40 TSLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAARAIQ 99
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
ELN L GK ++ + HR +FI N+ ++ + + G +I
Sbjct: 100 ELNYIPLNGKPVRVMYS---HRDPSVRRSGAGNIFIKNLDKSIDHKALHDTFSVFG-NII 155
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ D ++ Q++G+ F++Y A+ + +++ L+D V R S
Sbjct: 156 SCKVAVD--SSGQSKGYGFVQYETEESAQKAMGQLNG--MLLNDKQVYVGPFLRRQERDS 211
Query: 289 AASQV--KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAER 345
++ +YVKNL + T D LK +F GKIT V+ K G+ + + +GFV+F
Sbjct: 212 TGNKTIFTNVYVKNLAESTTDDDLKNIFGEFGKITSAVV--MKDGEGKPKGFGFVNFENA 269
Query: 346 SSAMKALKNTEKYEIDGQVLD 366
A KA+++ ++G+ D
Sbjct: 270 DDAAKAVES-----LNGKTFD 285
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 90/368 (24%), Positives = 153/368 (41%), Gaps = 60/368 (16%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
I H A D F G + ++ SG++KGY FV + T+E A +A+ +LN L
Sbjct: 139 IDHKALHDTFSVF----GNIISCKVAV-DSSGQSKGYGFVQYETEESAQKAMGQLNGMLL 193
Query: 187 KGKKIKCSAAQAKH------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
K++ + +++ N+ + +DD++ + G + S ++K
Sbjct: 194 NDKQVYVGPFLRRQERDSTGNKTIFTNVYVKNLAESTTDDDLKNIFGEFGK-ITSAVVMK 252
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---------- 284
D + + +GF F+ + N A + + ++ F DD V A ++
Sbjct: 253 DGEG--KPKGFGFVNFENADDAAKAVESLNGKTF--DDKEWFVGRAQKKSEREMELKVQY 308
Query: 285 ----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFV 340
E++ Q LYVKNL ++ ++LKELF +G +T + G R GFV
Sbjct: 309 EQSLKEAADKFQSSNLYVKNLDDSVSDEKLKELFTPYGTVTSCKVMRDPNGMSRGS-GFV 367
Query: 341 HFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT-YPPHLGY 399
F+ A KA+ I+ + L ++A+ + D++ +Q S + P PP +G
Sbjct: 368 AFSTPEEATKAMSEMSGKMIENKPLYVAVAQRKEDRRAR--LQAQFSQMRPVAMPPPVGP 425
Query: 400 GMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMA-----------MLPMLLPDGRIGYV 448
M G G QPM YG+ AP M ++P + P G +
Sbjct: 426 RMPIYPPGGPGI-------GQPMFYGQ--APPTMISSQPGFGYQQQLVPGMRPGGAPMHN 476
Query: 449 LQQPGVQQ 456
P VQQ
Sbjct: 477 FFMPMVQQ 484
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 125/262 (47%), Gaps = 18/262 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + +Y+G + ++ L IG V +R+ + + + GYA+V + +
Sbjct: 60 PQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSTADGE 119
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+EELN +KG+ + +Q + +FI N+ + G +
Sbjct: 120 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NI 178
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ +D +N N ++G+ F+ Y A + + ++ L++ V + P+
Sbjct: 179 LSCKVAQD-ENGN-SKGYGFVHYETDEAAAQAIKHVNG--MLLNEKKVYVGYHIPKKDRQ 234
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S ++KA +YVKN+ ++T++ +ELF+ +G++T + + G+ R +GFV+F+
Sbjct: 235 SKFEEMKANYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQEGKSRG-FGFVNFS 293
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
SA KA++ E GQ L
Sbjct: 294 THDSAAKAVEELNGKEFRGQEL 315
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 106/232 (45%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + ++G +KGY FV + T E A+QAI+ +
Sbjct: 154 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAAAQAIKHV 212
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ K +A + +++ N+ E++ R+ +K G V
Sbjct: 213 NGMLLNEKKVYVGYHIPKKDRQSKFEEMKANYTNVYVKNINLEVTEEEFRELFSKYGE-V 271
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D + ++RGF F+ + H A + ++++ +F+ + V A ++
Sbjct: 272 TSSTLARDQEG--KSRGFGFVNFSTHDSAAKAVEELNGKEFRGQE--LYVGRAQKKHERE 327
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
AE + Q LY+KNL DI D+L+++F+ G IT +
Sbjct: 328 EELRKSYEAARAEKANKYQGVNLYIKNLADDIDDDKLRQMFSEFGPITSAKV 379
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 79/158 (50%), Gaps = 29/158 (18%)
Query: 102 KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAK 161
K D + K E+ A + + VY+ I + ++++ R GEVT + + ++ G+++
Sbjct: 230 KKDRQSKFEEMKA---NYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQE-GKSR 285
Query: 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------------- 200
G+ FV F T + A++A+EELN E +G+++ AQ KH
Sbjct: 286 GFGFVNFSTHDSAAKAVEELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARAEKANKY 345
Query: 201 ---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L+I N+ + +D +R+ ++ GP + S ++++D
Sbjct: 346 QGVNLYIKNLADDIDDDKLRQMFSEFGP-ITSAKVMRD 382
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 84/173 (48%), Gaps = 18/173 (10%)
Query: 197 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 256
Q+ L++G + + E + + ++IG V SI + +D ++ G+A++ Y + A
Sbjct: 61 QSSASLYVGELDPSVTEAMLFELFSQIG-SVASIRVCRDAVT-RRSLGYAYVNYNSTADG 118
Query: 257 EYSRQKMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKEL 313
E + ++++ + L P + W+ DP ++ + +++KNL I L +
Sbjct: 119 EKALEELN---YTLIKGRPCRIMWSQRDPALRKTGQGN----VFIKNLDTAIDNKALHDT 171
Query: 314 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 366
FA G I + + G + YGFVH+ +A +A+K+ ++G +L+
Sbjct: 172 FAAFGNILSCKVAQDENGNSKG-YGFVHYETDEAAAQAIKH-----VNGMLLN 218
>gi|326501766|dbj|BAK02672.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 682
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 24/313 (7%)
Query: 104 DE--KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEA- 160
DE +K+ E EV++ G+P +A +DD+ GEV EVR+++ +
Sbjct: 92 DEGRRKRRKEY--------EVFVFGLPREAMEDDVAAALTEAGEVEEVRLVRDPAQPQLN 143
Query: 161 KGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDM-RKA 219
KG+AF F A A +L + +KGK L + N+ +W ++D+ K
Sbjct: 144 KGFAFARFAEVWQARWAANDLRTAMIKGKACGICKNNDNETLHLRNICFDWSKEDLAEKL 203
Query: 220 VTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL-DDNAPTVS 278
T + I L++ P +NRG+AF+++ +H A K+ L D +S
Sbjct: 204 KTFELENLEDINLIEHPDRKGRNRGYAFLDFSSHVDAVAGFLKLQKRDLFLGTDVRAQIS 263
Query: 279 WADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 338
+++ + + +VK++++ LP +D ++E F G+I + + +R +G
Sbjct: 264 FSNTISQDDKVMEKVKSVFLDGLPPHWDEDDVREKFGKFGEIDNIQLARNMFTAKRKDFG 323
Query: 339 FVHFAERSSAMKALKNTEKYEI---DGQV-LDCSLAKPQADQKTSGGSNSQKSALNPTYP 394
F+ F R +A+ + K G++ + +L +P+ K + S T+
Sbjct: 324 FISFTTRQAALGCIDMVNKGRFGEGSGKIRMKATLQRPKPTFK-------KPSWQGDTHM 376
Query: 395 PHLGYGMVGGAYG 407
+ G +G +YG
Sbjct: 377 LGVRRGFIGKSYG 389
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 136/269 (50%), Gaps = 17/269 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++D L + G V +RI + + + + GYA+V F A +A++
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDAQKALD 69
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + + G ++S +
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSGFGK-ILSSK 128
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES---S 288
++ D Q + +G+AF+ + N + A+ + ++M N K + + ++ E+ S
Sbjct: 129 VMSDDQGS---KGYAFVHFQNQSAADRAIEEM-NGKLLKSCKVFVGRFKNRKDREAELRS 184
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
AS+ +Y+KN D+ +RLK++F+ +GK V + G+ + +GFV F +A
Sbjct: 185 KASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG-FGFVSFDSHEAA 243
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA++ +I+GQ++ A+ + +++
Sbjct: 244 KKAVEEMNGRDINGQLIFVGRAQKKVERQ 272
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 117/257 (45%), Gaps = 33/257 (12%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L G++ ++M D +KGYAFV F+ + A +AIEE+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSGFGKILSSKVMS--DDQGSKGYAFVHFQNQSAADRAIEEM 157
Query: 182 N-----SCE-----LKGKKIKCSAAQAKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N SC+ K +K + + ++K F +N+G D ++ +K G
Sbjct: 158 NGKLLKSCKVFVGRFKNRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGK-T 216
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ D + +++GF F+ + +H A+ + ++M+ K++ A
Sbjct: 217 LSVKVMTDS--SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 274
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E Q LYVKNL I ++L+ F+ G I +V + + GQ +
Sbjct: 275 LKQMFEQLKRERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQ-QEGQSKG 333
Query: 336 RYGFVHFAERSSAMKAL 352
+GF+ F+ A KA+
Sbjct: 334 -FGFICFSSLEDATKAM 349
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 29/171 (16%)
Query: 104 DEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGY 163
+ K + AEL + + +Y+ D D+ L+ G+ V++M SG++KG+
Sbjct: 174 NRKDREAELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT-DSSGKSKGF 232
Query: 164 AFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------ 199
FV+F + E A +A+EE+N ++ G+ I AQ K
Sbjct: 233 GFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQG 292
Query: 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
+L++ N+ ++ +R + G SI VK Q Q++GF FI +
Sbjct: 293 VKLYVKNLDDTIDDEKLRNEFSSFG----SIIRVKVMQQEGQSKGFGFICF 339
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G ++Y+ + D+ LR+ S G + V++M+ G++KG+ F+ F + E A++A
Sbjct: 291 QGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQ--QEGQSKGFGFICFSSLEDATKA 348
Query: 178 IEELNSCELKGKKIKCSAAQA 198
+ E+N C L K I + AQ+
Sbjct: 349 MIEMNGCFLGSKPISIALAQS 369
>gi|281212216|gb|EFA86376.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 562
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 120/256 (46%), Gaps = 17/256 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+G + D S+ L +G V +RI + + + YA++ + A +A++
Sbjct: 8 SSLYVGDLHPDVSESHLFEVFNQVGPVANLRICRDNTTRRSLSYAYINYHNSTDAERALD 67
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN+ +KGK + +Q L FI N+ + + + G ++S +
Sbjct: 68 TLNNTPIKGKACRIMWSQRDPSLRKSGIGNIFIKNLDKTVDHKALYDTFSAFG-NILSCK 126
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+V D N ++GF F+ Y + AE + K++ + +N + E A
Sbjct: 127 VVTD--ETNTSKGFGFVHYESQESAEKAIAKVNG---MMINNQKVFVGPFKSSKERGATQ 181
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
+VK +++KNL +D+++ +L +L HGKIT + I + G+ + +GF +F +A
Sbjct: 182 EVKYTNVFIKNLSEDVSEQQLTDLLQAHGKITNLCIMTDEKGKSKG-FGFANFEHADAAK 240
Query: 350 KALKNTEKYEIDGQVL 365
A++N G+V+
Sbjct: 241 GAVENENGKMFSGKVI 256
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 104/243 (42%), Gaps = 26/243 (10%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+ H A D F G + +++ ++ +KG+ FV + ++E A +AI ++N +
Sbjct: 107 VDHKALYDTFSAF----GNILSCKVVT-DETNTSKGFGFVHYESQESAEKAIAKVNGMMI 161
Query: 187 KGKKI----------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
+K+ + + + K+ +FI N+ + E + + G + ++ ++ D
Sbjct: 162 NNQKVFVGPFKSSKERGATQEVKYTNVFIKNLSEDVSEQQLTDLLQAHG-KITNLCIMTD 220
Query: 236 PQNANQNRGFAFIEYYNHA--CAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQV 293
+ ++ GFA E+ + A E KM + K A R AE +
Sbjct: 221 EKGKSKGFGFANFEHADAAKGAVENENGKMFSGKVIYVGRA---QKKLEREAELKHKFET 277
Query: 294 KA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
K LY+KNL I D+L+ F+ +G IT + G +GFV ++ A
Sbjct: 278 KYQGVNLYIKNLDDSIDSDKLRATFSAYGTITSSKVMRDDKGSSSKGFGFVCYSTPDEAS 337
Query: 350 KAL 352
KA+
Sbjct: 338 KAV 340
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 110/236 (46%), Gaps = 22/236 (9%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + HD +D L IG+V VRI + S ++ GY +V F A++A++
Sbjct: 24 TSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMD 83
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
LN L K I+ + HR +FI N+ R + + G ++
Sbjct: 84 VLNFTPLNNKPIRIMYS---HRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFG-NIL 139
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ D + ++G+ F+++ N A+ + K++ L+D V + +
Sbjct: 140 SCKIAMDA--SGLSKGYGFVQFENEESAQSAIDKLNG--MLLNDKPVYVGHFQRKQDRDN 195
Query: 289 AASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHF 342
A S K +YVKNL + +T D LK F +G IT V+ G+ + +GFV+F
Sbjct: 196 ALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKC-FGFVNF 250
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 88/352 (25%), Positives = 141/352 (40%), Gaps = 47/352 (13%)
Query: 126 GIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE 185
I H A D F G + +I SG +KGY FV F +E A AI++LN
Sbjct: 122 AIDHKALYDTFSIF----GNILSCKIAMDA-SGLSKGYGFVQFENEESAQSAIDKLNGML 176
Query: 186 LKGKKIKCSAAQAK------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
L K + Q K + +++ N+ + +DD++ + G + S ++
Sbjct: 177 LNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGEYG-TITSAVVM 235
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR---------N 284
+D +++ F F+ + N A + + ++ KF DD V A +
Sbjct: 236 RDVDG--KSKCFGFVNFENADAAAEAVEALNGKKF--DDKEWYVGKALKKYERELELKER 291
Query: 285 AESSAASQVKA-----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
E S V LY+KNL +T ++L ELF+ G +T I G R GF
Sbjct: 292 HEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGS-GF 350
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT---SGGSNSQKSALNPTYP-- 394
V F+ A +AL + G+ L + A+ + ++K + S + + P P
Sbjct: 351 VAFSTPEEATRALAEMNGKMVAGKPLYVAPAQKKEERKARLPAQFSQVRPVTMAPIAPRL 410
Query: 395 PHLGYGMVGGA----YGALGAGYVP-AGFAQPMVYGRGAAPGGMAMLPMLLP 441
P G+ G YG ++ AGF P G PGG M +P
Sbjct: 411 PFYPAGVPGMGQQIMYGQAPPAFISQAGFGYPQQLVPGMRPGGAPMPNFFMP 462
>gi|242096254|ref|XP_002438617.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
gi|241916840|gb|EER89984.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
Length = 631
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 129/274 (47%), Gaps = 19/274 (6%)
Query: 114 ALPPHGS--EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTK 171
LPP GS +Y+G + + L + + VR+ + SG + GY +V F ++
Sbjct: 29 VLPPLGSISSLYVGDLAESVDETQLHAVFSQVAPLVSVRVCRDIVSGVSLGYGYVNFYSR 88
Query: 172 ELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKI 223
+ A+ A+E LN L GK I+ + + LF+ N+ + ++ + +
Sbjct: 89 QEATCALEALNFAPLSGKHIRVMFSNRDPSLRKSGRANLFVKNLEPSIDSKNLYEMFSSF 148
Query: 224 GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 283
G ++S ++ D +A Q++G+ F++Y A+ + ++ N D R
Sbjct: 149 GT-ILSCKVATD--SAGQSKGYGFVQYETEESAQDAINRL-NGMLANDREMFVGLHMRRR 204
Query: 284 NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
N E + +Y+KNLP + + D L++ FA G+IT V+ G + +GFV+F
Sbjct: 205 NRE----VKFTNVYIKNLPTEFSDDDLRQEFAPFGEITSAVVMRDVNGVSKC-FGFVNFE 259
Query: 344 ERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ A++A+K I+ + L A+ +A+++
Sbjct: 260 KPEFALEAVKKANGKVINDKTLYVGRAQKKAERQ 293
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/377 (20%), Positives = 142/377 (37%), Gaps = 56/377 (14%)
Query: 93 EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIM 152
+ ++V S++D +K + +++ + +L S G + ++
Sbjct: 106 KHIRVMFSNRDPSLRKSGR--------ANLFVKNLEPSIDSKNLYEMFSSFGTILSCKVA 157
Query: 153 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR-------LFIG 205
+G++KGY FV + T+E A AI LN +++ + ++I
Sbjct: 158 T-DSAGQSKGYGFVQYETEESAQDAINRLNGMLANDREMFVGLHMRRRNREVKFTNVYIK 216
Query: 206 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIE---------------- 249
N+P + +DD+R+ G + S +++D ++ GF E
Sbjct: 217 NLPTEFSDDDLRQEFAPFGE-ITSAVVMRDVNGVSKCFGFVNFEKPEFALEAVKKANGKV 275
Query: 250 ------YYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPK 303
Y A + RQ KFK +D V + N LY+KN+
Sbjct: 276 INDKTLYVGRAQKKAERQAELKTKFKQEDRDKKVDKPNGIN-----------LYLKNIDD 324
Query: 304 DITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQ 363
I + LK LF G++T + G+ + GFV FA + A+ + +
Sbjct: 325 SINDEGLKILFEEFGQVTSCKVMVDAQGRSKGS-GFVLFATAEAGHSAINGMNGRIVGKK 383
Query: 364 VLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVP---AGFAQ 420
L LA+P+ +++ ++ + L P+ G V +G G +P A F
Sbjct: 384 PLYVGLAQPKEERRAMLMAHFAQRNLAMAASPYAGPQQV--YFGHPAPGQIPPQAAVFGF 441
Query: 421 PMVYGRGAAPGGMAMLP 437
P + P M+P
Sbjct: 442 PQHFVPAMGPVSPVMMP 458
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 85 AQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIG 144
AQK + E+K +D +KK P+G +YL I +D+ L+ + G
Sbjct: 286 AQKKAERQAELKTKFKQEDRDKKVDK------PNGINLYLKNIDDSINDEGLKILFEEFG 339
Query: 145 EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
+VT ++M G +KG FV F T E AI +N + K + AQ K
Sbjct: 340 QVTSCKVMVDAQ-GRSKGSGFVLFATAEAGHSAINGMNGRIVGKKPLYVGLAQPK 393
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 125/270 (46%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G +P D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KG+ I+ +Q +FI N+ + + + G ++S +
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE----S 287
+V D + RGF F+ + H A+ + M+ L+D V R
Sbjct: 130 VVCDEHGS---RGFGFVHFETHEAAQNAISTMNG--MLLNDRKVFVGHFKSRREREVELG 184
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+ A + +YVKNL D+ + RL++LF+ GK+ V + G R +GFV+F +
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRG-FGFVNFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+ N E+ G++L A+ + +++
Sbjct: 244 AQKAVVNMNGREVSGRLLYVGRAQKRVERQ 273
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/335 (20%), Positives = 135/335 (40%), Gaps = 49/335 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + +++ D ++G+ FV F T E A AI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVC--DEHGSRGFGFVHFETHEAAQNAISTM 158
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L +K+ +++ +++ N+ + E ++ ++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFG-KM 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSWADPRNA 285
+S+++++D ++ +RGF F+ + H A+ + M+ + +L + +N
Sbjct: 218 LSVKVMRD--DSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNE 275
Query: 286 ESSAASQVKA----------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
Q+K LYVKNL I ++L++ F+ +G IT + G
Sbjct: 276 LKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKV--MTEGGHSK 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPP 395
+GFV F+ A KA+ + + L +LA+ + + +K+ L Y
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEE---------RKAILTNQYMQ 384
Query: 396 HLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAP 430
L ALG G V F QP Y A P
Sbjct: 385 RL------STMRALG-GPVLGSFQQPASYFLPAVP 412
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 85 AQKHYDGDEEMKV-AESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
AQK + E+K E K D ++ G +Y+ + D+ LR
Sbjct: 266 AQKRVERQNELKRRFEQMKQDRLTRY--------QGVNLYVKNLDDSIDDEKLRKEFSPY 317
Query: 144 GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
G +T ++M + G +KG+ FV F + E A++A+ E+N + K + + AQ K
Sbjct: 318 GVITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/367 (24%), Positives = 150/367 (40%), Gaps = 75/367 (20%)
Query: 143 IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--- 199
G + +++ K +G +KGY +V + T E A+ AIE+L+ + GK+++ +
Sbjct: 120 FGNILSCKVVTDKATGLSKGYGYVHYETNEAAASAIEKLDGMLIDGKEVQVGVFMRRDNR 179
Query: 200 ------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNH 253
+FI N+P W ED +R+ G V+S + P+ + GF F+ + H
Sbjct: 180 PGQADWTNVFIKNIPFEWTEDKLREEFEGFGE-VVSAK----PKEVQGSLGFGFVNFATH 234
Query: 254 ACAEYSRQKMSNPKFKLDDNAPTVSWA--------------------DPRNAESSAASQV 293
A + ++M++ +F + ++ V+ + + A Q
Sbjct: 235 EAAAAAVKEMNDKEFTVTEDGEEVTKVLFVGRAQKKAERERELRAKYEAEKIDRIAKFQG 294
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKAL 352
LYVKNL +T D L++ F+ G IT V+ K G R +GFV ++ A +A+
Sbjct: 295 VNLYVKNLDDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRG-FGFVCYSTPEDATRAV 353
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAG 412
I G+ + +LA+ + ++ + + G G
Sbjct: 354 NEMNGKIILGKPIFVALAQRRDVRRAQLEAQHNQ-----------------------GRG 390
Query: 413 YVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGAGS 472
+P PM GA PG + M M P PG+Q P PQ GRGG G
Sbjct: 391 NLPG----PM---GGAYPGAVPMPGMYRPG---------PGMQPAYPVPQMMQGRGGYGM 434
Query: 473 SSSGGRR 479
+ G R
Sbjct: 435 QAQPGGR 441
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 112/244 (45%), Gaps = 20/244 (8%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + ++ L ++G V +R+ + + + GYA+V + A +A++
Sbjct: 9 ASLYIGDLLPEVNEGFLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNYHQVADAERALD 68
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N E+KGK + +Q +F+ N+ + + G ++S +
Sbjct: 69 SMNFTEIKGKPCRIMWSQRDPSMRRSGVGNIFVKNLHEGIDNKQLYDTFSLFG-NILSCK 127
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+V D + ++G+ ++ Y + A + +K+ +D V R+ A
Sbjct: 128 VVTD-KATGLSKGYGYVHYETNEAAASAIEKLDG--MLIDGKEVQVGVFMRRDNRPGQAD 184
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR--YGFVHFAERSSAM 349
+++KN+P + T+D+L+E F G++ AKP + + +GFV+FA +A
Sbjct: 185 WTN-VFIKNIPFEWTEDKLREEFEGFGEVVS-----AKPKEVQGSLGFGFVNFATHEAAA 238
Query: 350 KALK 353
A+K
Sbjct: 239 AAVK 242
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 19/149 (12%)
Query: 71 EEEEETEDVVDGIDAQKHYDGDEEMKVA-ESDKDDEKKKHAELLALPPHGSEVYLGGIPH 129
E+ EE V+ AQK + + E++ E++K D K G +Y+ +
Sbjct: 253 EDGEEVTKVLFVGRAQKKAERERELRAKYEAEKIDRIAKF--------QGVNLYVKNLDD 304
Query: 130 DASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGK 189
+DD LR ++G +T R+MK +G ++G+ FV + T E A++A+ E+N + GK
Sbjct: 305 TVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDATRAVNEMNGKIILGK 364
Query: 190 KIKCSAAQ----------AKHRLFIGNVP 208
I + AQ A+H GN+P
Sbjct: 365 PIFVALAQRRDVRRAQLEAQHNQGRGNLP 393
>gi|224060641|ref|XP_002193452.1| PREDICTED: nucleolin [Taeniopygia guttata]
Length = 692
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 145/306 (47%), Gaps = 47/306 (15%)
Query: 93 EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIM 152
E+ K E+ K+++K++ A L +L +P+ ++DD+R ++ EVRI+
Sbjct: 351 EKAKSKETMKENKKERDARTL---------FLKNLPYRITEDDIREVFEN---ALEVRIV 398
Query: 153 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR----------L 202
KD G ++G A+V F+T+ A +A+EE E++G+ + K + L
Sbjct: 399 MNKD-GNSRGMAYVEFKTEAEADKALEEKQGTEIEGRAVVIDFTGEKSQQENQKGESTTL 457
Query: 203 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNR--GFAFIEYYNHACAEYSR 260
+ N+ E+ +++ K ++ PQN NQ R G+AF+++ A+ +
Sbjct: 458 IVNNLSYAATEETLQEVFKKASS-------IRVPQN-NQGRPKGYAFVDFATAEDAKEAL 509
Query: 261 QKMSNPKF-----KLDDNAPTVSW----ADPRNAESSAASQVKALYVKNLPKDITQDRLK 311
++N + +L+ ++P SW + R Q K L+V+ L +D T++ L+
Sbjct: 510 NSLNNTEIEGRTIRLEFSSP--SWQKGNTNARGGGGGFGQQSKTLFVRGLSEDTTEETLR 567
Query: 312 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
E F G I+ ++ G + +GFV F+ A A + E EIDG + AK
Sbjct: 568 ESF--EGSISARIVTDRDTGSSKG-FGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAK 624
Query: 372 PQADQK 377
P+ D +
Sbjct: 625 PKGDFQ 630
>gi|168057049|ref|XP_001780529.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668007|gb|EDQ54623.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 647
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 119/246 (48%), Gaps = 22/246 (8%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ VY+G + H+ S+ L G V +R+ + + + GYA+V + + + A++A+E
Sbjct: 24 TSVYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSLGYAYVNYHSAQDATRALE 83
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
LN + GK I+ + HR +FI N+ + + + G G++
Sbjct: 84 LLNFTPVNGKPIRIMFS---HRDPSLRKSGAANIFIKNLDKAIDNKALHDTFSAFG-GIL 139
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE-- 286
S ++ D ++ Q++G+ F+++ A+ + +K++ L+D V R
Sbjct: 140 SCKVATD--SSGQSKGYGFVQFEKEESAQSAIEKVNG--MLLNDKQVFVGPFVRRQERDL 195
Query: 287 SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346
S S+ +YVKNL ++ T D LK++F +G I+ V+ G+ + +GFV+F
Sbjct: 196 SGGVSKFNNVYVKNLGENTTDDELKKVFGAYGPISSAVVMRDNEGKSKC-FGFVNFELAD 254
Query: 347 SAMKAL 352
A KA+
Sbjct: 255 DAAKAV 260
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 144/341 (42%), Gaps = 45/341 (13%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +++ + + L + G + ++ SG++KGY FV F +E A AIE
Sbjct: 112 ANIFIKNLDKAIDNKALHDTFSAFGGILSCKVAT-DSSGQSKGYGFVQFEKEESAQSAIE 170
Query: 180 ELNSCELKGKKI-----------KCSAAQAK-HRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
++N L K++ S +K + +++ N+ N +D+++K GP +
Sbjct: 171 KVNGMLLNDKQVFVGPFVRRQERDLSGGVSKFNNVYVKNLGENTTDDELKKVFGAYGP-I 229
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP---RN 284
S +++D N +++ F F+ + A + + ++ K D+ V A R
Sbjct: 230 SSAVVMRD--NEGKSKCFGFVNFELADDAAKAVEALNGKK--QDEKEWYVGRAQKKSERE 285
Query: 285 AESSAAS-----------QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
AE A Q LY+KNL + ++L+ELFA +G IT + GQ
Sbjct: 286 AELRAKFEQERKSRIEKYQGVNLYLKNLDDAVDDEKLRELFAEYGTITSCKVMKDPQGQS 345
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT--SGGSNSQKSALNP 391
R GFV F+ A +A+ + + L +LA+ + +++ ++ + P
Sbjct: 346 RGS-GFVAFSTPEEATRAVTEMNTKMVGSKPLYVALAQRKEERRVRLQAAFAQMRTPVGP 404
Query: 392 TYPPHL-------GYGMVGGAYGALGAGYVPAGFAQPMVYG 425
T P L G G YG +G +P QP +G
Sbjct: 405 TVPTSLPMYHPGPGLGPQMPYYGQHPSGPIP---LQPAAFG 442
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +YL + D+ LR G +T ++MK G+++G FV F T E A++A
Sbjct: 304 QGVNLYLKNLDDAVDDEKLRELFAEYGTITSCKVMK-DPQGQSRGSGFVAFSTPEEATRA 362
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N+ + K + + AQ K
Sbjct: 363 VTEMNTKMVGSKPLYVALAQRK 384
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 128/266 (48%), Gaps = 11/266 (4%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + ++ L +G V+ +R+ + + + GYA+V F E + +A+E
Sbjct: 80 TSLYVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSLGYAYVNFLNAEDSERALE 139
Query: 180 ELNSCELKGKKIKCSAAQ---AKHRLFIGNV-PRNWGEDDMRKAVTKIGPGVISIELVKD 235
+LN ++G+ + +Q + R GN+ +N E KA+ I K
Sbjct: 140 QLNYTPIRGRPCRIMWSQRDPGQRRAGQGNIFIKNLDEAIDNKALHDTFAAFGKILSCKV 199
Query: 236 PQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV----SWADPRNAESSAAS 291
N + + G+ F+ Y ++ AE + + ++ L+D V S D + A +
Sbjct: 200 ASNEHGSLGYGFVHYESNDAAEAAIKHVNG--MLLNDKKVYVGHHISKKDRQAKIEEARA 257
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+YVKNL +TQ+ ++LF +GKIT I + G+ R +GFV+F+E A KA
Sbjct: 258 HYTNVYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQEGKSRG-FGFVNFSEHEQAAKA 316
Query: 352 LKNTEKYEIDGQVLDCSLAKPQADQK 377
++ E GQ L A+ +++++
Sbjct: 317 VEELNDTEFHGQKLFLGRAQKKSERE 342
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 94/212 (44%), Gaps = 35/212 (16%)
Query: 85 AQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKS 142
A KH +G + KV +K + A++ H + VY+ + + ++ +
Sbjct: 223 AIKHVNGMLLNDKKVYVGHHISKKDRQAKIEEARAHYTNVYVKNLDPAVTQEEFEKLFEK 282
Query: 143 IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH-- 200
G++T I ++ G+++G+ FV F E A++A+EELN E G+K+ AQ K
Sbjct: 283 YGKITSAAIATDQE-GKSRGFGFVNFSEHEQAAKAVEELNDTEFHGQKLFLGRAQKKSER 341
Query: 201 ----------------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
L+I N+P ++ ++ +++ G S ++++ P
Sbjct: 342 EEELRRAYEAAKNEKLSKYQGVNLYIKNLPEDFDDERLQEEFAPFG-TTTSAKVMRTPTG 400
Query: 239 ANQNRGFAFIEY-----YNHACAEYSRQKMSN 265
A +RGF F+ Y N A AE + + + N
Sbjct: 401 A--SRGFGFVCYSAPEEANKAVAEMNGKMIEN 430
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 119/277 (42%), Gaps = 34/277 (12%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G++ ++ + + GY FV + + + A AI+ +
Sbjct: 170 IFIKNLDEAIDNKALHDTFAAFGKILSCKVASNEHG--SLGYGFVHYESNDAAEAAIKHV 227
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ K A+A + +++ N+ +++ K K G +
Sbjct: 228 NGMLLNDKKVYVGHHISKKDRQAKIEEARAHYTNVYVKNLDPAVTQEEFEKLFEKYG-KI 286
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF---KL----------DDNA 274
S + D + ++RGF F+ + H A + +++++ +F KL +
Sbjct: 287 TSAAIATDQEG--KSRGFGFVNFSEHEQAAKAVEELNDTEFHGQKLFLGRAQKKSEREEE 344
Query: 275 PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 334
++ +N + S V LY+KNLP+D +RL+E FA G T + G R
Sbjct: 345 LRRAYEAAKNEKLSKYQGVN-LYIKNLPEDFDDERLQEEFAPFGTTTSAKVMRTPTGASR 403
Query: 335 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
+GFV ++ A KA+ I+ + L +LA+
Sbjct: 404 G-FGFVCYSAPEEANKAVAEMNGKMIENRPLYVALAQ 439
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 10/116 (8%)
Query: 85 AQKHYDGDEEMKVA-ESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
AQK + +EE++ A E+ K+++ K+ G +Y+ +P D D+ L+
Sbjct: 335 AQKKSEREEELRRAYEAAKNEKLSKY--------QGVNLYIKNLPEDFDDERLQEEFAPF 386
Query: 144 GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
G T ++M+ +G ++G+ FV + E A++A+ E+N ++ + + + AQ K
Sbjct: 387 GTTTSAKVMR-TPTGASRGFGFVCYSAPEEANKAVAEMNGKMIENRPLYVALAQRK 441
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 124/255 (48%), Gaps = 16/255 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+G + H+ ++ L + +V +R+ + + + GYA+V F + AS A+E
Sbjct: 33 SSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDASNAME 92
Query: 180 ELNSCELKGKKIKC-------SAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN L GK I+ S ++ H +FI N+ + +++ G V+S +
Sbjct: 93 LLNFTPLNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFASFG-SVLSCK 151
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS--WADPRNAESSA 289
+ D N Q++G+ F+++ N A+ + +++ ++D V E++
Sbjct: 152 VAVD--NNGQSKGYGFVQFENEEAAQSAINRLNG--MLINDKEVFVGRFVRHQERIEATG 207
Query: 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
+ + +YVKNL + + + LK+ F+++G IT ++ + G+ + +GFV+F SA
Sbjct: 208 SPKFTNVYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQSGKSKG-FGFVNFQSPDSAA 266
Query: 350 KALKNTEKYEIDGQV 364
A++ + +V
Sbjct: 267 AAVEKLNGTTFNDKV 281
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 87/362 (24%), Positives = 156/362 (43%), Gaps = 53/362 (14%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ V++ + + L+ S G V ++ ++G++KGY FV F +E A AI
Sbjct: 121 ANVFIKNLDTSIDNKALQETFASFGSVLSCKVAV-DNNGQSKGYGFVQFENEEAAQSAIN 179
Query: 180 ELNSCELKGK------------KIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
LN + K +I+ + + +++ N+ ++D++K + G +
Sbjct: 180 RLNGMLINDKEVFVGRFVRHQERIEATGSPKFTNVYVKNLSETTSDEDLKKFFSNYG-AI 238
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWAD---PRN 284
S ++KD + +++GF F+ + + A + +K++ F +D V A R
Sbjct: 239 TSAIVMKD--QSGKSKGFGFVNFQSPDSAAAAVEKLNGTTF--NDKVWYVGRAQRKGERE 294
Query: 285 AE---------SSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
AE +S ++KA LY+KNL I ++LKELF+ G IT + + G
Sbjct: 295 AELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLS 354
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT---SGGSNSQKSALN 390
+ GFV F+ A +AL I + L ++A+ + ++K + + Q L+
Sbjct: 355 KGS-GFVAFSTPEEASRALNGMNGKMIGKKPLYVAVAQRREERKARLQAHFTQIQAPGLS 413
Query: 391 PTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAA------PGGMAMLPMLLPDGR 444
P + G+ G GA P Q + +G+G A P G LLP R
Sbjct: 414 P-----MPSGLPGYHPGA------PRLAPQQLFFGQGTAGMMPPQPAGYGFQQQLLPGMR 462
Query: 445 IG 446
G
Sbjct: 463 AG 464
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
P + VY+ + SD+DL+ F + G +T +MK + SG++KG+ FV F++ + A+
Sbjct: 209 PKFTNVYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQ-SGKSKGFGFVNFQSPDSAAA 267
Query: 177 AIEELNSCELKGKKIKCSAAQAK 199
A+E+LN K AQ K
Sbjct: 268 AVEKLNGTTFNDKVWYVGRAQRK 290
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 127/274 (46%), Gaps = 25/274 (9%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+G + D ++ L IG + +R+ + + + GYA++ F+ A +A++
Sbjct: 74 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 133
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
+N +KG+ I+ + HR +FI N+ + + + G
Sbjct: 134 TMNFEMIKGQPIRIMWS---HRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFG---- 186
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---A 285
SI K N + +RGF F+ + H A+ + M+ L+D V R A
Sbjct: 187 SILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNG--MLLNDRKVFVGHFKSRQKREA 244
Query: 286 ESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
E A A +YVKNL D+ + L++LF+ GK+ V + GQ R +GFV+F +
Sbjct: 245 ELGARALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSNGQSRG-FGFVNFEK 303
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A KA+ + E+ GQ+L A+ +A++++
Sbjct: 304 HEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQS 337
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 125/287 (43%), Gaps = 43/287 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + + L + G + +++ + ++G+ FV F T E A +AI +
Sbjct: 164 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTM 221
Query: 182 NSCELKGKKIKCSAAQAKHR--------------LFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L +K+ +++ + +++ N+ + E ++ ++ G +
Sbjct: 222 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNVYVKNLHMDMDEQGLQDLFSQFGK-M 280
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
S+++++D + Q+RGF F+ + H A+ + M+ + + V A R
Sbjct: 281 QSVKVMRD--SNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVR--GQLLYVGRAQKRAERQ 336
Query: 288 SAAS----QVKA----------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
S QVK LYVKNL I +RLKE+F+ +G IT AK E
Sbjct: 337 SELKRRFEQVKQERQNRYQGVNLYVKNLDDSINDERLKEVFSAYGVITS-----AKVMTE 391
Query: 334 RSR---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
S +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 392 SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERK 438
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV +K+ AEL A + VY+ + D + L+ G++ V++M+
Sbjct: 230 KVFVGHFKSRQKREAELGARALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDS 289
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
+ G+++G+ FV F E A +A++ +N E++G+ + AQ +
Sbjct: 290 N-GQSRGFGFVNFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQKR 332
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 71 EEEEETEDVVDGID-------------AQKHYDGDEEMKVAESDKDDEKKKHAELLALPP 117
E+ EE + VD ++ AQK + E+K E++ +
Sbjct: 302 EKHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQ------ 355
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + +D+ L+ + G +T ++M +S +KG+ FV F + E A++A
Sbjct: 356 -GVNLYVKNLDDSINDERLKEVFSAYGVITSAKVMT--ESSHSKGFGFVCFSSPEEATKA 412
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 413 VTEMNGRIVGTKPLYVALAQRK 434
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 125/267 (46%), Gaps = 29/267 (10%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTK---E 172
P S +Y+G + D ++ L S+G V +R+ + + + GYA+V + + +
Sbjct: 19 PLANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQ 78
Query: 173 LASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVT 221
A +A+E LN + GK ++ + HR +FI N+ + + +
Sbjct: 79 AADRAMETLNYHVVNGKPMRIMWS---HRDPSARKSGVGNIFIKNLDKTIDAKALHDTFS 135
Query: 222 KIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSW 279
G ++S ++ D + +G+ F+ + + A A+ + Q ++ K K+ AP
Sbjct: 136 AFGK-ILSCKVATDANGVS--KGYGFVHFEDQAAADRAIQTVNQKKIEGKIVYVAPFQKR 192
Query: 280 AD-PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 338
AD PR A + ++VKNLP DI D L ++ HG+IT V+ G + +G
Sbjct: 193 ADRPR-----ARTLYTNVFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKG-FG 246
Query: 339 FVHFAERSSAMKALKNTEKYEIDGQVL 365
F++F + SA K ++ + E+ G+ L
Sbjct: 247 FINFKDAESAAKCVEYLNEREMSGKTL 273
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 30/233 (12%)
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK-- 199
+ G++ ++ + G +KGY FV F + A +AI+ +N +++GK + + Q +
Sbjct: 136 AFGKILSCKVATDAN-GVSKGYGFVHFEDQAAADRAIQTVNQKKIEGKIVYVAPFQKRAD 194
Query: 200 --------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYY 251
+F+ N+P + G+D++ K T+ G + S ++KD + ++GF FI +
Sbjct: 195 RPRARTLYTNVFVKNLPADIGDDELGKMATEHGE-ITSAVVMKDDKGG--SKGFGFINFK 251
Query: 252 N----HACAEYSRQK-MSNPKF-------KLDDNAPTVSWADPRNAESSAASQVKALYVK 299
+ C EY ++ MS K + A A+ E Q LYVK
Sbjct: 252 DAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQERYLKYQSMNLYVK 311
Query: 300 NLP-KDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMK 350
NL +++ D L+ELFA+ G IT + K G +S+ +GFV F A +
Sbjct: 312 NLSDEEVDDDALRELFANSGTITSCKV--MKDGSGKSKGFGFVCFTSHDEATR 362
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 27/158 (17%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ V++ +P D DD+L GE+T +MK D G +KG+ F+ F+ E A++ +E
Sbjct: 203 TNVFVKNLPADIGDDELGKMATEHGEITSAVVMK-DDKGGSKGFGFINFKDAESAAKCVE 261
Query: 180 ELNSCELKGKKIKCSAAQAK------------------------HRLFIGNVPRNWGEDD 215
LN E+ GK + AQ K L++ N+ +DD
Sbjct: 262 YLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQERYLKYQSMNLYVKNLSDEEVDDD 321
Query: 216 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNH 253
+ + + S +++KD + +++GF F+ + +H
Sbjct: 322 ALRELFANSGTITSCKVMKD--GSGKSKGFGFVCFTSH 357
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 121/261 (46%), Gaps = 20/261 (7%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
+ + +Y+G + ++ L SIG+V +R+ + + + GYA+V + + E +A
Sbjct: 46 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 105
Query: 178 IEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
+EELN +KGK + +Q + +FI N+ + G ++S
Sbjct: 106 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFG-NILS 164
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSA 289
++ +D ++G+ F+ Y A + + ++ L++ V P+ S
Sbjct: 165 CKVAQD--ELGNSKGYGFVHYETAEAANNAIKHVNG--MLLNEKKVFVGHHIPKKERMSK 220
Query: 290 ASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAE 344
++KA +YVKN+ D+T + +ELF HG IT I A+ Q +SR +GFV++
Sbjct: 221 FEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASI--ARDDQGKSRGFGFVNYIR 278
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
+A A+ + E GQ L
Sbjct: 279 HEAAAVAVDHLNDIEFKGQKL 299
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 103/234 (44%), Gaps = 36/234 (15%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + H + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQ-DELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ K +A +++ N+ + ++D R+ K G +
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHG-DI 255
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S + +D Q ++RGF F+ Y H A + +++ +FK V A ++
Sbjct: 256 TSASIARDDQG--KSRGFGFVNYIRHEAAAVAVDHLNDIEFK--GQKLYVGRAQKKHERE 311
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVI 325
E + Q LY+KNL D+ ++L+++F G IT KV++
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVIL 365
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 84 DAQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCK 141
+A KH +G E KV +K++ ++ + + + +Y+ I D +D+D R +
Sbjct: 191 NAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFE 250
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G++T I + D G+++G+ FV + E A+ A++ LN E KG+K+ AQ KH
Sbjct: 251 KHGDITSASIAR-DDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKH 308
>gi|401827787|ref|XP_003888186.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392999386|gb|AFM99205.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 500
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 115/239 (48%), Gaps = 14/239 (5%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G +P D DL ++G++ ++++K +S A +AFVTF +E A +A+ E
Sbjct: 16 IYVGDLPPKTIDSDLFRIFSNVGKILNIKLIKRGES--APSFAFVTFENEEDAEKAVREY 73
Query: 182 NSCELKGKKIKCSAAQAK----HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
EL ++I+ + +F+ N+P ++ D+ A + G ++S ++ PQ
Sbjct: 74 KHYELHDRQIRVMRKDERPPETGNIFVKNLPESFTSKDLDDAFSMFGE-IVSCKVATTPQ 132
Query: 238 NANQNRGFAFIEYYNHACAEYSRQKMSNPK-FKLDDNAPTVSWADP--RNAESSAASQVK 294
+++G+ F+++ A+ + +N L N V +P + ES S +
Sbjct: 133 --GKSKGYGFVQFKEKRSAKKVIKNFNNLNGLMLGGNKIVVELYNPEMKKGESKKVSTMF 190
Query: 295 A-LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
++KN P + + L +L +GK+T + P G+ + + F +F SA+ A+
Sbjct: 191 TNCFIKNFPGSVGEKELLDLLEKYGKVTSLCFPTKDDGKPKG-FAFANFETHESALNAI 248
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 79/153 (51%), Gaps = 13/153 (8%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+++G++P + D+ + + +G +++I+L+K ++A FAF+ + N AE + +
Sbjct: 16 IYVGDLPPKTIDSDLFRIFSNVGK-ILNIKLIKRGESA---PSFAFVTFENEEDAEKAVR 71
Query: 262 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 321
+ + ++L D V D R E+ ++VKNLP+ T L + F+ G+I
Sbjct: 72 EYKH--YELHDRQIRVMRKDERPPETGN------IFVKNLPESFTSKDLDDAFSMFGEIV 123
Query: 322 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
+ G+ + YGFV F E+ SA K +KN
Sbjct: 124 SCKVATTPQGKSKG-YGFVQFKEKRSAKKVIKN 155
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 127/281 (45%), Gaps = 25/281 (8%)
Query: 115 LPPHGS-------EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVT 167
LPP S +Y+G + ++ + IG V +R+ + + + GYA+V
Sbjct: 33 LPPQTSISSAPSASLYVGELDPTVTEAMIFEIFNMIGPVASIRVCRDAVTRRSLGYAYVN 92
Query: 168 FRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKA 219
+ +A+E+LN +KG+ + +Q + +FI N+ +
Sbjct: 93 YLNTADGERALEQLNYSLIKGRPCRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDT 152
Query: 220 VTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW 279
G V+S ++ D Q +++G+ F+ Y AE + + ++ L+D V
Sbjct: 153 FVAFG-NVLSCKVATDEQ--GRSKGYGFVHYETAEAAETAIKAVNG--MLLNDKKVYVGP 207
Query: 280 ADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
PR S ++KA LY+KNL ++TQ+ +ELF +G +T ++ G+ +
Sbjct: 208 HIPRKERQSKLDEMKAQFTNLYIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDDEGRSKG 267
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
+GFV++ A A+ N ++ G+ L + A+ +A++
Sbjct: 268 -FGFVNYESHEEAQAAVDNLHDTDLKGKKLYVTRAQKKAER 307
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 110/276 (39%), Gaps = 31/276 (11%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G V ++ + G +KGY FV + T E A AI+ +
Sbjct: 135 IFIKNLDEQIDNKALHDTFVAFGNVLSCKVAT-DEQGRSKGYGFVHYETAEAAETAIKAV 193
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ K +A+ L+I N+ +++ + + G
Sbjct: 194 NGMLLNDKKVYVGPHIPRKERQSKLDEMKAQFTNLYIKNLDTEVTQEEFEELFNRYGSVT 253
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+I V D +++GF F+ Y +H A+ + + + K T + E
Sbjct: 254 SAIVQVDD---EGRSKGFGFVNYESHEEAQAAVDNLHDTDLKGKKLYVTRAQKKAEREEE 310
Query: 288 SAASQVKA------------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
S +A LYVKNL D+ D+L+ F G IT + + G +
Sbjct: 311 LRRSYEQAKMEKLSKYQGVNLYVKNLEDDVDDDKLRAEFEPFGTITSCKVMSDEKGSSKG 370
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
+GFV F+ A KA+ I + L SLA+
Sbjct: 371 -FGFVCFSSPDEATKAIAEMNNKMIGSKPLYVSLAQ 405
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 76/169 (44%), Gaps = 28/169 (16%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ ++L + + +Y+ + + + ++ G VT I++ D G +KG+ F
Sbjct: 212 KERQSKLDEMKAQFTNLYIKNLDTEVTQEEFEELFNRYGSVTSA-IVQVDDEGRSKGFGF 270
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH------------------------R 201
V + + E A A++ L+ +LKGKK+ + AQ K
Sbjct: 271 VNYESHEEAQAAVDNLHDTDLKGKKLYVTRAQKKAEREEELRRSYEQAKMEKLSKYQGVN 330
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L++ N+ + +D +R G + S +++ D + + ++GF F+ +
Sbjct: 331 LYVKNLEDDVDDDKLRAEFEPFG-TITSCKVMSDEKGS--SKGFGFVCF 376
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 132/278 (47%), Gaps = 20/278 (7%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G + D L +G V VR+ + ++ + GYA+V F + A++A+E L
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEML 103
Query: 182 NSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
N + GK I+ S +FI N+ ++ + + G ++S ++
Sbjct: 104 NFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFG-NILSCKVA 162
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN----APTVSWADPRNAESSA 289
+ + +++G+ F++Y A+ + +++ L+D P V + N S
Sbjct: 163 TE--MSGESKGYGFVQYEQDESAQNAINELNG--MLLNDKKVYVGPFVRKQERENVFGSP 218
Query: 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
+ +YVKNL + T+D LKELF + G IT V++ A G+ R +GFV+F A+
Sbjct: 219 --KFNNVYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRC-FGFVNFENPDDAV 275
Query: 350 KALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKS 387
A+++ + D + L A+ +++++ + +KS
Sbjct: 276 HAVEDLNGKKFDDKELYVGRAQKKSEREMQLKESFEKS 313
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/424 (23%), Positives = 170/424 (40%), Gaps = 82/424 (19%)
Query: 95 MKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG 154
+++ S++D +K + +++ + + L + G + ++
Sbjct: 113 IRIMYSNRDPSSRKSG--------AANIFIKNLDKSIDNKALYDTFSAFGNILSCKVAT- 163
Query: 155 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------HRL 202
+ SGE+KGY FV + E A AI ELN L KK+ K + +
Sbjct: 164 EMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNV 223
Query: 203 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 262
++ N+ + ED++++ GP + S+ +V+ + ++R F F+ + N A ++ +
Sbjct: 224 YVKNLSESTTEDNLKELFGNFGP-ITSVIVVR--ADDGKSRCFGFVNFENPDDAVHAVED 280
Query: 263 MSNPKFKLDDNAPTVSWADPR--------------NAESSAASQVKALYVKNLPKDITQD 308
++ KF DD V A + N E++ +Q LY+KNL + D
Sbjct: 281 LNGKKF--DDKELYVGRAQKKSEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDDD 338
Query: 309 -RLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367
+LKELFA G IT + G + GFV F A +AL + + L
Sbjct: 339 EKLKELFAEFGTITSCKVMRDSNGVNKGS-GFVAFKSSEDATRALVAMNGKMVGSKPLYV 397
Query: 368 SLAKPQADQKTSGGSNSQKSALNPTYPP------------------HLGYGMVGGAYGAL 409
+LA+ + +++ +Q S + P PP L YG A+
Sbjct: 398 ALAQRKEERRAR--LQAQFSQMRPVMPPPVAPRMPMYPPGVPGMGQQLFYGQPPPAFVNP 455
Query: 410 GAGYVPAGFAQPMVYGR--GAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGR 467
GY GF Q M+ G G AP ++PM VQQ P +P R
Sbjct: 456 QPGY---GFQQHMIPGMRPGVAPMPNFVMPM---------------VQQGQQPQRPSGRR 497
Query: 468 GGAG 471
GAG
Sbjct: 498 AGAG 501
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 125/252 (49%), Gaps = 19/252 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + A++ L +IG V +R+ + + + GYA+V F + A++AI+
Sbjct: 43 TSLYVGDLESSATEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFSQAQDAARAID 102
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN + GK I+ +Q +FI N+ ++ +R + G ++S +
Sbjct: 103 VLNFQVVNGKPIRILYSQRDPTIRKSGVGNIFIKNLDKDIDTVALRDTFAQFG-NIVSAK 161
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D Q ++G+ FI++ A A+ + +K++ +L+D V R + +
Sbjct: 162 VATDGQ--GNSKGYGFIQFDTEAAAKEAIEKVNG--MELNDKVVYVGPFQRRAERGTTET 217
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+ ++VKNL ++T + L+++F G +T V+I + G+ + +GFV + A KA
Sbjct: 218 KFNNVFVKNLGDEVTDEELRKVFEGFGPVTSVMISKDEDGKSKG-FGFVCYETPEDASKA 276
Query: 352 LKNTEKYEIDGQ 363
++ E+DG+
Sbjct: 277 VE-----ELDGK 283
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 121/295 (41%), Gaps = 32/295 (10%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + D LR G + ++ G +KGY F+ F T+ A +AIE++
Sbjct: 133 IFIKNLDKDIDTVALRDTFAQFGNIVSAKVAT-DGQGNSKGYGFIQFDTEAAAKEAIEKV 191
Query: 182 NSCELKGKKIKCSAAQAK----------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
N EL K + Q + + +F+ N+ ++++RK GP V S+
Sbjct: 192 NGMELNDKVVYVGPFQRRAERGTTETKFNNVFVKNLGDEVTDEELRKVFEGFGP-VTSVM 250
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ KD +++GF F+ Y A + +++ K +D V A + AE A
Sbjct: 251 ISKDEDG--KSKGFGFVCYETPEDASKAVEELDG-KHGEEDKKWVVCRAQ-KKAEREAEL 306
Query: 292 QVKA---------------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 336
+ K LY+KNL + L+ELF G IT + G R
Sbjct: 307 KAKFEAERRERMEKMAGANLYIKNLEDGADDETLRELFKEFGTITSCRVMRDASGVSRGS 366
Query: 337 YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP 391
FV F+ A +A+ + + L +LA+ + D++ + + ++ P
Sbjct: 367 -AFVAFSSPEEATRAVTELNGKMVGAKPLYVALAQRKEDRRMRLQAQFAQRSMGP 420
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 16/146 (10%)
Query: 61 EVEEEVEEEVEE------EEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLA 114
E E+ + VEE EE+ + VV AQK + + E+K + + E+++ E +A
Sbjct: 268 ETPEDASKAVEELDGKHGEEDKKWVV--CRAQKKAEREAELK---AKFEAERRERMEKMA 322
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
G+ +Y+ + A D+ LR K G +T R+M+ SG ++G AFV F + E A
Sbjct: 323 ----GANLYIKNLEDGADDETLRELFKEFGTITSCRVMRDA-SGVSRGSAFVAFSSPEEA 377
Query: 175 SQAIEELNSCELKGKKIKCSAAQAKH 200
++A+ ELN + K + + AQ K
Sbjct: 378 TRAVTELNGKMVGAKPLYVALAQRKE 403
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 128/257 (49%), Gaps = 22/257 (8%)
Query: 118 HGS--EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
HG+ +Y+G + + +D L + + +V VR+ + + + GY +V + E A
Sbjct: 37 HGALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTEDAE 96
Query: 176 QAIEELNSCELKGKKIKCSAAQAKH--------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+++LN L GK I+ + + LF+ N+ ++ + + + G +
Sbjct: 97 KAMQKLNYSTLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHETFSGCGT-I 155
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ D + Q+RG+ F+++ A+ + +K+ N K L+D V +
Sbjct: 156 VSCKVAAD--HMGQSRGYGFVQFDTEDSAKNAIEKL-NGKV-LNDKQIFVGPFLRKEERE 211
Query: 288 SAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAE 344
SAA ++K +YVKNL + T D LK F +G I+ V+ + G +SR +GFV+F
Sbjct: 212 SAADKMKFTNVYVKNLSEVTTDDELKTTFGQYGSISSAVV--MRDGDGKSRCFGFVNFEN 269
Query: 345 RSSAMKALK--NTEKYE 359
A +A++ N +K++
Sbjct: 270 PEDAARAVEALNGKKFD 286
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 156/357 (43%), Gaps = 63/357 (17%)
Query: 158 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------KCSAAQAKH-RLFIG 205
G+++GY FV F T++ A AIE+LN L K+I + +A + K +++
Sbjct: 166 GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVK 225
Query: 206 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 265
N+ +D+++ + G + S +++D ++R F F+ + N A + + ++
Sbjct: 226 NLSEVTTDDELKTTFGQYG-SISSAVVMRD--GDGKSRCFGFVNFENPEDAARAVEALNG 282
Query: 266 PKFKLDDNAPTVSWADPRN------------AESSAASQVKAL--YVKNLPKDITQDRLK 311
KF DD V A ++ S A ++ L YVKNL +T ++L+
Sbjct: 283 KKF--DDKEWYVGKAQKKSERELELSRRYEQGSSDAGNKFDGLNLYVKNLDDTVTDEKLR 340
Query: 312 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
ELFA G IT + G + GFV F+ S A + L + G+ L +LA+
Sbjct: 341 ELFAEFGTITSCKVMRDPSGTSKGS-GFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQ 399
Query: 372 PQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAP- 430
+ +++ +Q S + P + P +G M GA G G Q + YG+G+ P
Sbjct: 400 RKEERRAK--LQAQFSQMRPAFIPGVGPRMPIFPGGAPGLG-------QQIFYGQGSPPI 450
Query: 431 ----GGMAMLPMLLPDGRIGYV-LQQPGVQQHNPPPQPRSGRGGAGSSSSGGRRSTD 482
G P L+P R + + QPG Q P P GGRRS D
Sbjct: 451 IPHQPGFGYQPQLVPGLRPSFFPMMQPG--QQGPRP--------------GGRRSGD 491
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G +Y+ + +D+ LR G +T ++M+ SG +KG FV F AS+ +
Sbjct: 322 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMR-DPSGTSKGSGFVAFSAASEASRVL 380
Query: 179 EELNSCELKGKKIKCSAAQAK 199
E+N + GK + + AQ K
Sbjct: 381 NEMNGKMVGGKPLYVALAQRK 401
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 83/193 (43%), Gaps = 34/193 (17%)
Query: 92 DEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
D+++ V + +E++ A+ + + VY+ + +DD+L+ G ++ +
Sbjct: 196 DKQIFVGPFLRKEERESAADKMKF----TNVYVKNLSEVTTDDELKTTFGQYGSISSAVV 251
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH----------- 200
M+ D G+++ + FV F E A++A+E LN + K+ AQ K
Sbjct: 252 MRDGD-GKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYE 310
Query: 201 -------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAF 247
L++ N+ ++ +R+ + G + S ++++DP ++ GF
Sbjct: 311 QGSSDAGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGT-ITSCKVMRDPSGTSKGSGFVA 369
Query: 248 IEYYNHACAEYSR 260
A +E SR
Sbjct: 370 FS----AASEASR 378
>gi|221121672|ref|XP_002156905.1| PREDICTED: ELAV-like protein 2-like [Hydra magnipapillata]
Length = 339
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 140/318 (44%), Gaps = 38/318 (11%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + D++ IG V+ ++++ +G++ GYAF+ + T +LA AI +L+ L
Sbjct: 21 LPQTFTQDEVSQMFARIGPVSNCKLIRNYTTGQSLGYAFIEYPTAQLAEDAINQLDGMTL 80
Query: 187 KGKKIKCSAAQ------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ KK+K S A+ +++ +P ED + G +I+ +++ D A+
Sbjct: 81 QDKKLKVSYARPSSTEIKNSNVYVAGLPSWVDEDRLLSLFAPFG-SIITHKILTDA--AS 137
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA---------------DPRNA 285
++RG F+ Y + AE + + M+ A V A P N+
Sbjct: 138 KSRGVGFVRYSLKSDAEKAIESMAGKVLPDSTTALIVKLAIPPASKQLAAAAAAAQPLNS 197
Query: 286 ESSAASQV---------KALYVKNLPKDITQDRLKELFAHHGKI--TKVVIPPAKPGQER 334
+ Q+ +YV L ++ L ELFA G I K++ AKP +
Sbjct: 198 IAGVPKQIVQYNPMSLSNPVYVYGLQPHHSELTLYELFAPFGGILNVKLIRDNAKPEKPC 257
Query: 335 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK-PQADQKTSGG-SNSQKSALNPT 392
YGFV+F ++ A+ A+ + DG++L S + Q Q T+ Q A P
Sbjct: 258 KGYGFVNFRKQDEALAAIATMHNHPYDGKILQVSFKQNKQLGQATAMNLLMHQGVASTPI 317
Query: 393 YPPHLGYGMVGGAYGALG 410
++ GM G YGA+G
Sbjct: 318 PQNNISVGMNYG-YGAVG 334
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 132/278 (47%), Gaps = 20/278 (7%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G + D L +G V VR+ + ++ + GYA+V F + A++A+E L
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEML 103
Query: 182 NSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
N + GK I+ S +FI N+ ++ + + G ++S ++
Sbjct: 104 NFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFG-NILSCKVA 162
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN----APTVSWADPRNAESSA 289
+ + +++G+ F++Y A+ + +++ L+D P V + N S
Sbjct: 163 TE--MSGESKGYGFVQYEQDESAQNAINELNG--MLLNDKKVYVGPFVRKQERENVFGS- 217
Query: 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
+ +YVKNL + T+D LKELF + G IT V++ A G+ R +GFV+F A+
Sbjct: 218 -PKFNNVYVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRC-FGFVNFENPDDAV 275
Query: 350 KALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKS 387
A+++ + D + L A+ +++++ + +KS
Sbjct: 276 HAVEDLNGKKFDDKELYVGRAQKKSEREMQLKESFEKS 313
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/424 (23%), Positives = 170/424 (40%), Gaps = 82/424 (19%)
Query: 95 MKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG 154
+++ S++D +K + +++ + + L + G + ++
Sbjct: 113 IRIMYSNRDPSSRKSG--------AANIFIKNLDKSIDNKALYDTFSAFGNILSCKVAT- 163
Query: 155 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------HRL 202
+ SGE+KGY FV + E A AI ELN L KK+ K + +
Sbjct: 164 EMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNV 223
Query: 203 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 262
++ N+ + ED++++ GP + S+ +V+ + ++R F F+ + N A ++ +
Sbjct: 224 YVKNLSESTTEDNLKELFGNFGP-ITSVIVVR--ADDGKSRCFGFVNFENPDDAVHAVED 280
Query: 263 MSNPKFKLDDNAPTVSWADPR--------------NAESSAASQVKALYVKNLPKDITQD 308
++ KF DD V A + N E++ +Q LY+KNL + D
Sbjct: 281 LNGKKF--DDKELYVGRAQKKSEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDDD 338
Query: 309 -RLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367
+LKELFA G IT + G + GFV F A +AL + + L
Sbjct: 339 EKLKELFAEFGTITSCKVMRDSNGVNKGS-GFVAFKSSEDATRALVAMNGKMVGSKPLYV 397
Query: 368 SLAKPQADQKTSGGSNSQKSALNPTYPP------------------HLGYGMVGGAYGAL 409
+LA+ + +++ +Q S + P PP L YG A+
Sbjct: 398 ALAQRKEERRAR--LQAQFSQMRPVMPPPVAPRMPMYPPGVPGMGQQLFYGQPPPAFVNP 455
Query: 410 GAGYVPAGFAQPMVYGR--GAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGR 467
GY GF Q M+ G G AP ++PM VQQ P +P R
Sbjct: 456 QPGY---GFQQHMIPGMRPGVAPMPNFVMPM---------------VQQGQQPQRPSGRR 497
Query: 468 GGAG 471
GAG
Sbjct: 498 AGAG 501
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 120/261 (45%), Gaps = 17/261 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KG+ + +Q + +FI N+ + G ++
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 173
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L++ V + S
Sbjct: 174 SCKVAQD--EYGNSKGYGFVHYETAEAATNAIKHVNG--MLLNEKKVFVGHHIAKKDRQS 229
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +YVKN+ +D+T + + LF +G+IT + + +GFV+F++
Sbjct: 230 KFEEMKANFTNIYVKNVEQDVTDEEFRSLFEKYGEITSATLSRDNETGKSRGFGFVNFSD 289
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
+A A++ +YE+ GQ L
Sbjct: 290 HEAASAAVEGLNEYELKGQKL 310
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 84 DAQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCK 141
+A KH +G E KV +K + ++ + + + +Y+ + D +D++ R +
Sbjct: 201 NAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRSLFE 260
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
GE+T + + ++G+++G+ FV F E AS A+E LN ELKG+K+ AQ KH
Sbjct: 261 KYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQKKH 319
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 122/269 (45%), Gaps = 18/269 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + ++ L IG V +R+ + + + GYA+V + +A+E
Sbjct: 49 ASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 108
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+LN +K + + +Q + +FI N+ + G V+S +
Sbjct: 109 QLNYSLIKNRPCRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFG-TVLSCK 167
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D +++G+ F+ Y AE + + ++ L+D V R S
Sbjct: 168 VATD--ETGRSKGYGFVHYETAEAAENAIKAVNG--MLLNDKKVYVGHHISRKERQSKLE 223
Query: 292 QVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+++A LYVKNL ++TQD ELF +G +T VI + G+ + +GFV+F
Sbjct: 224 EMRAQFTNLYVKNLDPEVTQDEFIELFKKYGNVTSAVISVDEEGKSKG-FGFVNFETHDE 282
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
A KA+ +E+ G+ L S A+ +A++
Sbjct: 283 AQKAVDELNDFELKGKKLFVSRAQKKAER 311
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 117/281 (41%), Gaps = 41/281 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G V ++ ++G +KGY FV + T E A AI+ +
Sbjct: 139 IFIKNLDEAIDNKALHDTFAAFGTVLSCKVAT-DETGRSKGYGFVHYETAEAAENAIKAV 197
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIG--- 224
N L KK+ K +A+ L++ N+ +D+ + K G
Sbjct: 198 NGMLLNDKKVYVGHHISRKERQSKLEEMRAQFTNLYVKNLDPEVTQDEFIELFKKYGNVT 257
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR- 283
VIS++ +++GF F+ + H A+ + ++++ F+L VS A +
Sbjct: 258 SAVISVD------EEGKSKGFGFVNFETHDEAQKAVDELND--FELKGKKLFVSRAQKKA 309
Query: 284 -------------NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 330
E + Q LY+KNL D+ D+L+ F G IT + +
Sbjct: 310 EREEELRRSYEQAKLEKLSKYQGVNLYIKNLEDDVDDDKLRAEFEPFGTITSCKVMRDEK 369
Query: 331 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
GQ + +GFV F+ A KA+ I + L SLA+
Sbjct: 370 GQSKG-FGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQ 409
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 97/219 (44%), Gaps = 32/219 (14%)
Query: 71 EEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHD 130
E E E+ + ++ D KV K++ ++L + + +Y+ + +
Sbjct: 185 ETAEAAENAIKAVNGMLLNDK----KVYVGHHISRKERQSKLEEMRAQFTNLYVKNLDPE 240
Query: 131 ASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKK 190
+ D+ K G VT ++ + G++KG+ FV F T + A +A++ELN ELKGKK
Sbjct: 241 VTQDEFIELFKKYGNVTSA-VISVDEEGKSKGFGFVNFETHDEAQKAVDELNDFELKGKK 299
Query: 191 IKCSAAQAKH------------------------RLFIGNVPRNWGEDDMRKAVTKIGPG 226
+ S AQ K L+I N+ + +D +R G
Sbjct: 300 LFVSRAQKKAEREEELRRSYEQAKLEKLSKYQGVNLYIKNLEDDVDDDKLRAEFEPFG-T 358
Query: 227 VISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 265
+ S ++++D + Q++GF F+ + + A + +M+N
Sbjct: 359 ITSCKVMRDEK--GQSKGFGFVCFSSPDEATKAVAEMNN 395
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 10/116 (8%)
Query: 85 AQKHYDGDEEMKVA-ESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
AQK + +EE++ + E K ++ K+ G +Y+ + D DD LR +
Sbjct: 305 AQKKAEREEELRRSYEQAKLEKLSKY--------QGVNLYIKNLEDDVDDDKLRAEFEPF 356
Query: 144 GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
G +T ++M+ + G++KG+ FV F + + A++A+ E+N+ + K + S AQ +
Sbjct: 357 GTITSCKVMR-DEKGQSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRR 411
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 120/248 (48%), Gaps = 14/248 (5%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y G + ++ L +IG V +R+ + + + GYA+V F+ A++AI+
Sbjct: 32 TSLYCGDLDPSCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFQQGNDAARAID 91
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN + GK I+ +Q +FI N+ + + + G ++S +
Sbjct: 92 ALNFQVVNGKPIRIMYSQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFAQFG-NIVSAK 150
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D Q Q++G+ F+++ A+ + +K++ L+D V RN +
Sbjct: 151 VATDLQ--GQSKGYGFVQFDTEEGAQSAIEKVNG--MLLNDKQVYVGPFQKRNERGGGPT 206
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+YVKNL + +T+++L+E+F G +T VV+ G+ + +GFV + + +A K+
Sbjct: 207 TFNNVYVKNLHESVTEEKLREVFEKFGALTSVVVMKDAEGKSKG-FGFVCYEDAEAAGKS 265
Query: 352 LKNTEKYE 359
++ + Y+
Sbjct: 266 VEELDGYD 273
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 121/269 (44%), Gaps = 30/269 (11%)
Query: 158 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH----------RLFIGNV 207
G++KGY FV F T+E A AIE++N L K++ Q ++ +++ N+
Sbjct: 157 GQSKGYGFVQFDTEEGAQSAIEKVNGMLLNDKQVYVGPFQKRNERGGGPTTFNNVYVKNL 216
Query: 208 PRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 267
+ E+ +R+ K G + S+ ++KD + +++GF F+ Y + A S +++
Sbjct: 217 HESVTEEKLREVFEKFG-ALTSVVVMKDAEG--KSKGFGFVCYEDAEAAGKSVEELDGYD 273
Query: 268 FKLDDNAPTVSWADP---RNAESSAASQVKA-----------LYVKNLPKDITQDRLKEL 313
K++D A V A R AE A + LY+KNL + +L+EL
Sbjct: 274 -KIEDKAWVVCRAQKKSEREAELKAKFDAERRERMEKMAGANLYIKNLEDTVDDAKLREL 332
Query: 314 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373
FA G IT + G R FV F+ A +A+ + L +LA+ +
Sbjct: 333 FAEFGTITSCRVMRDTAGASRGS-AFVAFSSADEATRAVTEMNGKMAGQKPLYVALAQRK 391
Query: 374 ADQKTSGGSNSQKSALNPTYPPHLG-YGM 401
D++ + + + P++G YGM
Sbjct: 392 EDRRLRLQAQFAQRQVAAGGMPNMGPYGM 420
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 71/143 (49%), Gaps = 9/143 (6%)
Query: 58 EEVEVEEEVEEEVEEEEETEDVVDGI-DAQKHYDGDEEMKVAESDKDDEKKKHAELLALP 116
E+ E + EE++ ++ ED + AQK + + E+K + D E+++ E +A
Sbjct: 257 EDAEAAGKSVEELDGYDKIEDKAWVVCRAQKKSEREAELK---AKFDAERRERMEKMA-- 311
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
G+ +Y+ + D LR G +T R+M+ +G ++G AFV F + + A++
Sbjct: 312 --GANLYIKNLEDTVDDAKLRELFAEFGTITSCRVMR-DTAGASRGSAFVAFSSADEATR 368
Query: 177 AIEELNSCELKGKKIKCSAAQAK 199
A+ E+N K + + AQ K
Sbjct: 369 AVTEMNGKMAGQKPLYVALAQRK 391
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 29/160 (18%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + VY+ + +++ LR + G +T V +MK + G++KG+ FV + E A
Sbjct: 205 PTTFNNVYVKNLHESVTEEKLREVFEKFGALTSVVVMKDAE-GKSKGFGFVCYEDAEAAG 263
Query: 176 QAIEELNS-----------CELKGKKIKCSAAQAKH--------------RLFIGNVPRN 210
+++EEL+ C + K + + +AK L+I N+
Sbjct: 264 KSVEELDGYDKIEDKAWVVCRAQKKSEREAELKAKFDAERRERMEKMAGANLYIKNLEDT 323
Query: 211 WGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
+ +R+ + G + S +++D A +RG AF+ +
Sbjct: 324 VDDAKLRELFAEFGT-ITSCRVMRD--TAGASRGSAFVAF 360
>gi|148709768|gb|EDL41714.1| mCG1979, isoform CRA_b [Mus musculus]
Length = 767
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 98/191 (51%), Gaps = 17/191 (8%)
Query: 188 GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAF 247
G+ + A+ RLF+G +P+ +++ + K+ GV+ + + + +NRGFAF
Sbjct: 296 GRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAF 355
Query: 248 IEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDIT 306
+EY +H A +R+++ + +L + V WA+P + S VK LYV+NL +
Sbjct: 356 VEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTS 415
Query: 307 QDRLKELFAHHGKITKVVIPPAKPGQ-ERSR----YGFVHFAERSSAMKALKNTEKYEID 361
++ +++ F KPG ER + Y FVHF+ R A++A+K +D
Sbjct: 416 EEMIEKEFNS-----------IKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 464
Query: 362 GQVLDCSLAKP 372
G ++ +LAKP
Sbjct: 465 GSPIEVTLAKP 475
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAK 110
Query: 176 QAIEELNSCELK 187
AI++LN+ E++
Sbjct: 111 NAIKQLNNYEIR 122
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 124/271 (45%), Gaps = 18/271 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
P GS +Y+G + + ++ L +IG V +R+ + + + GYA+V F A +
Sbjct: 43 PSGS-LYVGDLHPEVTEAQLFEIFNNIGPVVSIRVCRDAITRRSLGYAYVNFHAAVDAER 101
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A++ LN ++GK + +Q +FI N+ + + + G ++
Sbjct: 102 ALDTLNYSLIRGKPCRIMWSQRDPAVRKSGLGNVFIKNLDKTIDNKALLDTFSAFG-NIL 160
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE-- 286
S ++V D N ++G+ F+ Y AE + K++ ++ V PR
Sbjct: 161 SCKVVTDE---NGSKGYGFVHYETQEAAETAIAKVNG--MVINGKQVFVGIFVPRKERVE 215
Query: 287 -SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAER 345
++ ++VKNLP+D T L ++F+ GKIT VVI + + +GFV + +
Sbjct: 216 LGEGVTKFTNVFVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKV 275
Query: 346 SSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
A A+ E+ G+ L + A+ +A++
Sbjct: 276 EDAQAAVNALNGTELAGKTLFVARAQKKAER 306
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 95/401 (23%), Positives = 164/401 (40%), Gaps = 66/401 (16%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGY FV + T+E A AI ++
Sbjct: 135 VFIKNLDKTIDNKALLDTFSAFGNILSCKVVT--DENGSKGYGFVHYETQEAAETAIAKV 192
Query: 182 NSCELKGKKIKCSAAQAKH-------------RLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
N + GK++ + +F+ N+P + + + +K G +
Sbjct: 193 NGMVINGKQVFVGIFVPRKERVELGEGVTKFTNVFVKNLPEDTTDAALNDMFSKFGK-IT 251
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAPT 276
S+ ++K + ++++GF F+ Y A+ + ++ + K + A
Sbjct: 252 SVVIMKSSDD-DKSKGFGFVCYEKVEDAQAAVNALNGTELAGKTLFVARAQKKAEREAEL 310
Query: 277 VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 336
D E Q LYVKNL I +D+++ FA G IT V I + G+ R
Sbjct: 311 KQRYDALRLERINKYQGINLYVKNLDDAIDEDKIRTEFAPFGTITSVKIMRDEKGKSRG- 369
Query: 337 YGFVHFAERSSAMKALKNTEKYEIDG--QVLDCSLAKPQADQKTSGGSNSQKSALNPTYP 394
+GF+ F+ A KA+ I G + L +LA+ D++ +Q +A
Sbjct: 370 FGFICFSSAEEATKAVTEMNGQTIQGFPKPLYVALAQRAEDRR------AQLAAHFAQQR 423
Query: 395 PHLGYGMVGGAYGALGAGYVP------AGFAQP--MVY-----GRGAAPGGMAMLPMLLP 441
++G M GG + Y+ AG Q MVY RGA P A +P+ +
Sbjct: 424 GNMGGRMAGGVIAGMPPQYMAGPQMFYAGVPQNRGMVYPQNVMRRGAWP---ANVPVGVA 480
Query: 442 DGRIGYVLQQPGVQQHNPPPQ--PRSGRGGAGSSSSGGRRS 480
G +PG PQ PR AG++S GG R+
Sbjct: 481 AG------ARPGFGPFMAVPQGVPRQ----AGNNSRGGNRA 511
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 27/155 (17%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ V++ +P D +D L G++T V IMK D ++KG+ FV + E A A+
Sbjct: 224 TNVFVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQAAVN 283
Query: 180 ELNSCELKGKKIKCSAAQAKH------------------------RLFIGNVPRNWGEDD 215
LN EL GK + + AQ K L++ N+ ED
Sbjct: 284 ALNGTELAGKTLFVARAQKKAEREAELKQRYDALRLERINKYQGINLYVKNLDDAIDEDK 343
Query: 216 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
+R G + S+++++D + ++RGF FI +
Sbjct: 344 IRTEFAPFGT-ITSVKIMRDEK--GKSRGFGFICF 375
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 126/251 (50%), Gaps = 20/251 (7%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G + + +D L + + +V VR+ + + + GY +V + + A +A+++L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 182 NSCELKGKKIKCSAAQAKH--------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
N L GK I+ + + LF+ N+ ++ + +A + G ++S ++
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGT-IVSCKVA 166
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQV 293
D + Q+RG+ F+++ A+ + +K+ N K L+D V + SAA ++
Sbjct: 167 TD--HMGQSRGYGFVQFDTEDSAKNAIEKL-NGKV-LNDKQIFVGPFLRKEERESAADKM 222
Query: 294 KA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMK 350
K +YVKNL + T D LK F +G I+ V+ + G +SR +GFV+F A +
Sbjct: 223 KFTNVYVKNLSEATTDDELKTTFGQYGSISSAVV--MRDGDGKSRCFGFVNFENPEDAAR 280
Query: 351 ALK--NTEKYE 359
A++ N +K++
Sbjct: 281 AVEALNGKKFD 291
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 94/362 (25%), Positives = 154/362 (42%), Gaps = 71/362 (19%)
Query: 158 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------KCSAAQAKH-RLFIG 205
G+++GY FV F T++ A AIE+LN L K+I + +A + K +++
Sbjct: 171 GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVK 230
Query: 206 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 265
N+ +D+++ + G + S +++D ++R F F+ + N A + + ++
Sbjct: 231 NLSEATTDDELKTTFGQYG-SISSAVVMRD--GDGKSRCFGFVNFENPEDAARAVEALNG 287
Query: 266 PKFKLDDNAPTVSWADPRN------------AESSAASQVKAL--YVKNLPKDITQDRLK 311
KF DD V A ++ S ++ L YVKNL +T ++L+
Sbjct: 288 KKF--DDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 312 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
ELFA G IT + G + GFV F+ S A + L + G+ L +LA+
Sbjct: 346 ELFAEFGTITSCKVMRDPSGTSKGS-GFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQ 404
Query: 372 PQADQKTSGGSNSQKSALNPTYPPHLGYGM---VGGAYGALGAGYVPAGFAQPMVYGRGA 428
+ +++ +Q S + P + P +G M GGA G Q + YG+G
Sbjct: 405 RKEERRAK--LQAQFSQMRPAFIPGVGPRMPIFTGGA----------PGLGQQIFYGQGP 452
Query: 429 AP-----GGMAMLPMLLPDGRIGYV---LQQPGVQQHNPPPQPRSGRGGAGSSSSGGRRS 480
P G P L+P R + + QPG Q P P GGRRS
Sbjct: 453 PPIIPHQPGFGYQPQLVPGMRPAFFGGPMMQPG--QQGPRP--------------GGRRS 496
Query: 481 TD 482
D
Sbjct: 497 GD 498
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 83/193 (43%), Gaps = 34/193 (17%)
Query: 92 DEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
D+++ V + +E++ A+ + + VY+ + +DD+L+ G ++ +
Sbjct: 201 DKQIFVGPFLRKEERESAADKMKF----TNVYVKNLSEATTDDELKTTFGQYGSISSAVV 256
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH----------- 200
M+ D G+++ + FV F E A++A+E LN + K+ AQ K
Sbjct: 257 MRDGD-GKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYE 315
Query: 201 -------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAF 247
L++ N+ ++ +R+ + G + S ++++DP ++ GF
Sbjct: 316 QGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGT-ITSCKVMRDPSGTSKGSGFVA 374
Query: 248 IEYYNHACAEYSR 260
A +E SR
Sbjct: 375 FS----AASEASR 383
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G +Y+ + +D+ LR G +T ++M+ SG +KG FV F AS+ +
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMR-DPSGTSKGSGFVAFSAASEASRVL 385
Query: 179 EELNSCELKGKKIKCSAAQAK 199
E+N + GK + + AQ K
Sbjct: 386 NEMNGKMVGGKPLYVALAQRK 406
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 119/268 (44%), Gaps = 18/268 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + +Y+G + ++ L IG V+ +R+ + + + GYA+V F A
Sbjct: 24 PLASASLYVGELDPSVTEAMLFEMFNIIGPVSSIRVCRDAVTRRSLGYAYVNFHRMADAE 83
Query: 176 QAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+E LN +KG+ + +Q L FI N+ + + + G +
Sbjct: 84 RALETLNYSMIKGRSCRIMWSQRDPSLRKGNNGNIFIKNLDPSIDHKALHDTFSAFG-NI 142
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ D Q ++G+ F+ Y AE + + ++ L+D V R
Sbjct: 143 LSCKIAHDEQ--GNSKGYGFVHYETLEAAESAIKSVNG--MLLNDRKVFVGHHISRKERE 198
Query: 288 S----AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S + Q +YVKN+P D+T + L +LF +G IT VI G + +GFV+F
Sbjct: 199 SKLGESRVQFTNIYVKNIPFDVTDEELSQLFGKYGTITSCVITRDDDGTSKG-FGFVNFE 257
Query: 344 ERSSAMKALKNTEKYEIDGQVLDCSLAK 371
+ A A+ + K + GQ L S A+
Sbjct: 258 KHQDAQNAVDDLHKKDFRGQDLYVSRAQ 285
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+ IP D +D++L G +T I + D G +KG+ FV F + A A++
Sbjct: 209 TNIYVKNIPFDVTDEELSQLFGKYGTITSCVITR-DDDGTSKGFGFVNFEKHQDAQNAVD 267
Query: 180 ELNSCELKGKKIKCSAAQAKH 200
+L+ + +G+ + S AQ K+
Sbjct: 268 DLHKKDFRGQDLYVSRAQKKN 288
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 127/306 (41%), Gaps = 45/306 (14%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
I H A D F G + +I + G +KGY FV + T E A AI+ +N L
Sbjct: 127 IDHKALHDTFSAF----GNILSCKIAH-DEQGNSKGYGFVHYETLEAAESAIKSVNGMLL 181
Query: 187 KGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
+K+ K ++ + +++ N+P + ++++ + K G + S +
Sbjct: 182 NDRKVFVGHHISRKERESKLGESRVQFTNIYVKNIPFDVTDEELSQLFGKYG-TITSCVI 240
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN-------- 284
+D + ++GF F+ + H A+ + + F+ D VS A +N
Sbjct: 241 TRD--DDGTSKGFGFVNFEKHQDAQNAVDDLHKKDFRGQD--LYVSRAQKKNEREEELRR 296
Query: 285 ------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 338
E + Q LYVKNL D+ DRL++ F+ +G IT I + +G
Sbjct: 297 QYEEAKLEKMSKYQGVNLYVKNLDDDMDDDRLRDEFSVYGVITSAKIMRDEKTNISRGFG 356
Query: 339 FVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS-----GGSNSQKSALNP-- 391
FV F A +A+ I + + ++A+ + +++ N K A+ P
Sbjct: 357 FVCFTSPEDATRAVTEMNGRIIGSKPIYVAIAQRKEVRRSQLEIQMAQRNQLKQAMMPPS 416
Query: 392 TYPPHL 397
+PP +
Sbjct: 417 VFPPTM 422
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 126/251 (50%), Gaps = 20/251 (7%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G + + +D L + + +V VR+ + + + GY +V + + A +A+++L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 182 NSCELKGKKIKCSAAQAKH--------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
N L GK I+ + + LF+ N+ ++ + +A + G ++S ++
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGT-IVSCKVA 166
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQV 293
D + Q+RG+ F+++ A+ + +K+ N K L+D V + SAA ++
Sbjct: 167 TD--HMGQSRGYGFVQFDTEDSAKNAIEKL-NGKV-LNDKQIFVGPFLRKEERESAADKM 222
Query: 294 KA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMK 350
K +YVKNL + T D LK F +G I+ V+ + G +SR +GFV+F A +
Sbjct: 223 KFTNVYVKNLSEATTDDELKTTFGQYGSISSAVV--MRDGDGKSRCFGFVNFENPEDAAR 280
Query: 351 ALK--NTEKYE 359
A++ N +K++
Sbjct: 281 AVEALNGKKFD 291
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 94/362 (25%), Positives = 154/362 (42%), Gaps = 71/362 (19%)
Query: 158 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------KCSAAQAKH-RLFIG 205
G+++GY FV F T++ A AIE+LN L K+I + +A + K +++
Sbjct: 171 GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVK 230
Query: 206 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 265
N+ +D+++ + G + S +++D ++R F F+ + N A + + ++
Sbjct: 231 NLSEATTDDELKTTFGQYG-SISSAVVMRD--GDGKSRCFGFVNFENPEDAARAVEALNG 287
Query: 266 PKFKLDDNAPTVSWADPRN------------AESSAASQVKAL--YVKNLPKDITQDRLK 311
KF DD V A ++ S ++ L YVKNL +T ++L+
Sbjct: 288 KKF--DDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 312 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
ELFA G IT + G + GFV F+ S A + L + G+ L +LA+
Sbjct: 346 ELFAEFGTITSCKVMRDPSGTSKGS-GFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQ 404
Query: 372 PQADQKTSGGSNSQKSALNPTYPPHLGYGM---VGGAYGALGAGYVPAGFAQPMVYGRGA 428
+ +++ +Q S + P + P +G M GGA G Q + YG+G
Sbjct: 405 RKEERRAK--LQAQFSQMRPAFIPGVGPRMPIFTGGA----------PGLGQQIFYGQGP 452
Query: 429 AP-----GGMAMLPMLLPDGRIGYV---LQQPGVQQHNPPPQPRSGRGGAGSSSSGGRRS 480
P G P L+P R + + QPG Q P P GGRRS
Sbjct: 453 PPIIPHQPGFGYQPQLVPGMRPAFFGGPMMQPG--QQGPRP--------------GGRRS 496
Query: 481 TD 482
D
Sbjct: 497 GD 498
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 83/193 (43%), Gaps = 34/193 (17%)
Query: 92 DEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
D+++ V + +E++ A+ + + VY+ + +DD+L+ G ++ +
Sbjct: 201 DKQIFVGPFLRKEERESAADKMKF----TNVYVKNLSEATTDDELKTTFGQYGSISSAVV 256
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH----------- 200
M+ D G+++ + FV F E A++A+E LN + K+ AQ K
Sbjct: 257 MRDGD-GKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYE 315
Query: 201 -------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAF 247
L++ N+ ++ +R+ + G + S ++++DP ++ GF
Sbjct: 316 QGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGT-ITSCKVMRDPSGTSKGSGFVA 374
Query: 248 IEYYNHACAEYSR 260
A +E SR
Sbjct: 375 FS----AASEASR 383
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G +Y+ + +D+ LR G +T ++M+ SG +KG FV F AS+ +
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMR-DPSGTSKGSGFVAFSAASEASRVL 385
Query: 179 EELNSCELKGKKIKCSAAQAK 199
E+N + GK + + AQ K
Sbjct: 386 NEMNGKMVGGKPLYVALAQRK 406
>gi|417410140|gb|JAA51547.1| Putative heteroproteinous nuclear ribonucleoprotein r rrm
superfamily, partial [Desmodus rotundus]
Length = 369
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 75/128 (58%), Gaps = 9/128 (7%)
Query: 226 GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RN 284
G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP
Sbjct: 8 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 67
Query: 285 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
+ ++VK L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +
Sbjct: 68 PDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFED 119
Query: 345 RSSAMKAL 352
R +A+KA+
Sbjct: 120 RGAAVKAM 127
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 127/274 (46%), Gaps = 18/274 (6%)
Query: 104 DEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGY 163
D ++ E + + + +Y+G + ++ L IG+V +R+ + S ++ GY
Sbjct: 51 DSAEEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGY 110
Query: 164 AFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDD 215
A+V + E +AIEELN ++G+ + +Q +FI N+
Sbjct: 111 AYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKA 170
Query: 216 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 275
+ + G ++S+++ D + Q++ F F+ Y A+ + + ++ L+D
Sbjct: 171 LHDTFSAFGK-ILSVKVATD--DLGQSKCFGFVHYETEEAAQAAIESVNG--MLLNDREV 225
Query: 276 TVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 331
V + S ++KA +YVKN+ T+ +ELFA GKIT + + G
Sbjct: 226 YVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEG 285
Query: 332 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
+ + +GFV+F E +A KA++ EI+GQ +
Sbjct: 286 KSKG-FGFVNFEEHEAAAKAVEELNDKEINGQKI 318
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/370 (22%), Positives = 151/370 (40%), Gaps = 51/370 (13%)
Query: 129 HDASDDDLRH-FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
H A D+ H + G++ V++ D G++K + FV + T+E A AIE +N L
Sbjct: 163 HPAIDNKALHDTFSAFGKILSVKVAT-DDLGQSKCFGFVHYETEEAAQAAIESVNGMLLN 221
Query: 188 GKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
+++ K +A + +++ N+ + E + + G + SI L
Sbjct: 222 DREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGK-ITSIYLE 280
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAPTVSWAD 281
KD + +++GF F+ + H A + +++++ + K + +
Sbjct: 281 KDAEG--KSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYE 338
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
E + Q L+VKNL + I ++L+E F G IT + G+ + +GFV
Sbjct: 339 AVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKG-FGFVC 397
Query: 342 FAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGM 401
F+ A KA+ + ++G+ L +LA+ + + ++S L M
Sbjct: 398 FSTPEEATKAITEMNQRMVNGKPLYVALAQRK---------DVRRSQLEQQIQARNQMRM 448
Query: 402 VGGAYGALGAGYVPAGFAQPMVYGRGAA--PGGMAMLPMLLPDGRIGYVLQQPGVQQHNP 459
A AG +P F PM YG+ P G P P+ + + G Q P
Sbjct: 449 QNAA----AAGGLPGQFMPPMFYGQQGFFPPNGRGNAPFPGPNPQ----MMMRGRGQPFP 500
Query: 460 PPQPRSGRGG 469
PR G G
Sbjct: 501 EQWPRPGPNG 510
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 83 IDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPP----HGSEVYLGGIPHDASDDDLRH 138
I+ QK Y G + K ++ +E KK E + L G +++ + + L
Sbjct: 313 INGQKIYVGRAQKK---RERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEE 369
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
K G +T ++M D+G++KG+ FV F T E A++AI E+N + GK + + AQ
Sbjct: 370 EFKPFGTITSSKVMV-DDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQR 428
Query: 199 K 199
K
Sbjct: 429 K 429
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 135/276 (48%), Gaps = 17/276 (6%)
Query: 113 LALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE 172
+A + +Y+G + D ++D L ++G V +RI + + + GYA+V F
Sbjct: 3 IAAKYRQASLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLA 62
Query: 173 LASQAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIG 224
A +A++ +N +KGK I+ +Q L FI N+ R+ + + + G
Sbjct: 63 DAQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFG 122
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 284
++S +++ D + RG+AF+ + N A+ + ++M+ K D + ++
Sbjct: 123 K-ILSSKVMSDDHGS---RGYAFVHFQNQIAADRAIEEMNGALLK-DCRLFVGRFKSRKD 177
Query: 285 AES---SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
E+ + A + +Y+KN ++ +RL E+F+ +GK V + G+ + +GFV
Sbjct: 178 REAEFQNKAHEFTNVYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKSKG-FGFVS 236
Query: 342 FAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
F +A +A++ +I+GQ+L A+ +A+++
Sbjct: 237 FDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQ 272
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 124/273 (45%), Gaps = 44/273 (16%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G++ ++M D ++GYAFV F+ + A +AIEE+
Sbjct: 100 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMS--DDHGSRGYAFVHFQNQIAADRAIEEM 157
Query: 182 N-----SCEL-----KGKKIKCSAAQAKHRLFIGNVPRNWGE--DDMR--KAVTKIGPGV 227
N C L K +K + + Q K F +N+G+ DD R + +K G
Sbjct: 158 NGALLKDCRLFVGRFKSRKDREAEFQNKAHEFTNVYIKNFGDEMDDERLNEVFSKYGK-T 216
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ D + +++GF F+ + +H A+ + ++M+ K + A
Sbjct: 217 LSVKVMTDS--SGKSKGFGFVSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAE 274
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E Q LY+KNL + I ++L+ F+ G I++V K QE
Sbjct: 275 LKQMFEQLKHERFRRCQGAKLYIKNLDETIDDEKLRREFSSFGSISRV-----KVMQEEG 329
Query: 336 R---YGFVHFAERSSAMKALKNTEKYEIDGQVL 365
R +G + F+ A KA+ E++G++L
Sbjct: 330 RSKGFGLICFSSAEEATKAMT-----EMNGRIL 357
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G+++Y+ + D+ LR S G ++ V++M+ + G +KG+ + F + E A++A
Sbjct: 291 QGAKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQ--EEGRSKGFGLICFSSAEEATKA 348
Query: 178 IEELNSCELKGKKIKCSAAQ 197
+ E+N L K + + AQ
Sbjct: 349 MTEMNGRILGSKPLNIALAQ 368
>gi|355694936|gb|AER99836.1| heteroproteinous nuclear ribonucleoprotein R [Mustela putorius
furo]
Length = 363
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 75/128 (58%), Gaps = 9/128 (7%)
Query: 226 GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RN 284
G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP
Sbjct: 3 GLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEE 62
Query: 285 AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
+ ++VK L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +
Sbjct: 63 PDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFED 114
Query: 345 RSSAMKAL 352
R +A+KA+
Sbjct: 115 RGAAVKAM 122
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 131/282 (46%), Gaps = 31/282 (10%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + D + + + G + +I ++G +KGYAFV F T+E A++AIE++
Sbjct: 109 IFIKNLEKDIDNKAIYDTFSAFGNILSCKIALD-ENGNSKGYAFVHFETQEAANRAIEKV 167
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L GKK+ K AK+ L++ N + +D+ R + G +
Sbjct: 168 NGMLLSGKKVFVGHFMSRKERMEKIGNLAAKYTNLYVKNFRDDISDDEFRDLFEQCGK-I 226
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKL------------DDNAP 275
+S +++D ++ ++RGF F+ Y H A+ + + ++ +F L + +A
Sbjct: 227 VSCVVMRD--DSGKSRGFGFVSYETHEAAQKAVETLNEKEFDLRRMYVARAQKKSERSAL 284
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ + E Q LYVKNL I +L++ FA+ G IT + + G R
Sbjct: 285 LRRQYEQKKQEMMKRFQGVNLYVKNLDDVIDDAKLRQEFANFGTITSAKVMSDEKGISRG 344
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+GFV F+ A KA+ I + L +LA+ + D+K
Sbjct: 345 -FGFVCFSSPEEATKAVTEMNGRIIISKPLYVALAQRKEDRK 385
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 123/267 (46%), Gaps = 18/267 (6%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G + D ++ L S G ++ +R+ + + + GYA+V F+ A +A++ L
Sbjct: 21 LYVGDLAPDVNEAQLYEKFNSTGPISSIRVCRDAITRRSLGYAYVNFQQPNDAERALDTL 80
Query: 182 NSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
N + GK + +Q L FI N+ ++ + + G ++S ++
Sbjct: 81 NFDPVNGKPCRIMWSQRDPSLRRSGVGNIFIKNLEKDIDNKAIYDTFSAFG-NILSCKIA 139
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE----SSA 289
D +N N ++G+AF+ + A + +K++ L V R +
Sbjct: 140 LD-ENGN-SKGYAFVHFETQEAANRAIEKVNG--MLLSGKKVFVGHFMSRKERMEKIGNL 195
Query: 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
A++ LYVKN DI+ D ++LF GKI V+ G+ R +GFV + +A
Sbjct: 196 AAKYTNLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRDDSGKSRG-FGFVSYETHEAAQ 254
Query: 350 KALKNTEKYEIDGQVLDCSLAKPQADQ 376
KA++ + E D + + + A+ ++++
Sbjct: 255 KAVETLNEKEFDLRRMYVARAQKKSER 281
>gi|389748929|gb|EIM90106.1| polyadenylate binding protein [Stereum hirsutum FP-91666 SS1]
Length = 682
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 129/276 (46%), Gaps = 26/276 (9%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G + ++ L IG V +R+ + + + GYA+V + +A+E+L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNVTDGERALEQL 105
Query: 182 NSCELKGKKIKCSAAQ---AKHRLFIGNV-PRNWGE--DDMRKAVTKIGP---------- 225
N +KG+ + +Q A + GN+ +N E D+ + K P
Sbjct: 106 NYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDELIDNKVRTAQKTPPHALHDTFAAF 165
Query: 226 -GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 284
V+S ++ D Q ++RG+ ++ Y AE + + ++ L+D V + R
Sbjct: 166 GNVLSCKVATDEQG--RSRGYGYVHYETAEAAESAIKAVNG--MLLNDKKVYVGYHISRK 221
Query: 285 AESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFV 340
S +++A LYVKNL ++TQD+ ELF+ G +T VI + G+ + +GFV
Sbjct: 222 ERQSKLEEMRAHFTNLYVKNLDLEVTQDQFVELFSQFGAVTSAVIQTDEEGKSKG-FGFV 280
Query: 341 HFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
+F A KA+ + +G+ L S A+ +A++
Sbjct: 281 NFENHEQAAKAVDTLHDTDFNGKKLFVSRAQKKAER 316
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 141/372 (37%), Gaps = 51/372 (13%)
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH- 200
+ G V ++ + G ++GY +V + T E A AI+ +N L KK+ ++
Sbjct: 164 AFGNVLSCKVAT-DEQGRSRGYGYVHYETAEAAESAIKAVNGMLLNDKKVYVGYHISRKE 222
Query: 201 -------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAF 247
L++ N+ +D + ++ G V S + D + +++GF F
Sbjct: 223 RQSKLEEMRAHFTNLYVKNLDLEVTQDQFVELFSQFG-AVTSAVIQTDEEG--KSKGFGF 279
Query: 248 IEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR--------------NAESSAASQV 293
+ + NH A + + + F + VS A + E + Q
Sbjct: 280 VNFENHEQAAKAVDTLHDTDF--NGKKLFVSRAQKKAEREEELRKSYESAKMEKLSKYQG 337
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
LY+KNL D+ ++L+ F G IT + G + +GFV F+ A KA+
Sbjct: 338 VNLYIKNLEDDVDDEKLRAEFEPFGTITSCKVMRDDKGTSKG-FGFVCFSSPDEATKAVA 396
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSN-SQKSALNPTYPPHLGYGMVGGAYGALGAG 412
I + L SLA+ + ++ S +Q++ + M A L G
Sbjct: 397 EMNNKMIGSKPLYVSLAQRREVRRQQLESQIAQRNQIR----------MQQAAAAGLPGG 446
Query: 413 YVPAGFAQPMVYGRGAAPGGMAML-----PMLLPDGRIGYVLQQPGVQQHNPPPQPRSGR 467
Y+ P G G M+ ML P R Q PG+ +P QP G
Sbjct: 447 YINGPMYYPPGPGAYPPQAGRGMMGYGQPGMLPPRPRYAPNQQVPGMPVPSPYGQPPQGY 506
Query: 468 GGAGSSSSGGRR 479
GG GG R
Sbjct: 507 GGMPGYPRGGPR 518
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 10/116 (8%)
Query: 85 AQKHYDGDEEM-KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
AQK + +EE+ K ES K ++ K+ G +Y+ + D D+ LR +
Sbjct: 310 AQKKAEREEELRKSYESAKMEKLSKY--------QGVNLYIKNLEDDVDDEKLRAEFEPF 361
Query: 144 GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
G +T ++M+ D G +KG+ FV F + + A++A+ E+N+ + K + S AQ +
Sbjct: 362 GTITSCKVMR-DDKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQRR 416
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 83/184 (45%), Gaps = 28/184 (15%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ ++L + H + +Y+ + + + D G VT +++ + G++KG+ F
Sbjct: 221 KERQSKLEEMRAHFTNLYVKNLDLEVTQDQFVELFSQFGAVTSA-VIQTDEEGKSKGFGF 279
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH------------------------R 201
V F E A++A++ L+ + GKK+ S AQ K
Sbjct: 280 VNFENHEQAAKAVDTLHDTDFNGKKLFVSRAQKKAEREEELRKSYESAKMEKLSKYQGVN 339
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L+I N+ + ++ +R G + S ++++D + ++GF F+ + + A +
Sbjct: 340 LYIKNLEDDVDDEKLRAEFEPFGT-ITSCKVMRD--DKGTSKGFGFVCFSSPDEATKAVA 396
Query: 262 KMSN 265
+M+N
Sbjct: 397 EMNN 400
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 99/379 (26%), Positives = 157/379 (41%), Gaps = 75/379 (19%)
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC----- 193
FC G + ++ SGE+KGY FV + E A AI++LN + KK+
Sbjct: 148 FC-VFGNILSCKVATDA-SGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGPFIR 205
Query: 194 ------SAAQAK-HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFA 246
S Q K + +++ N+ N EDD+++ K G + S ++++ +++ F
Sbjct: 206 KQERDNSPGQVKFNNVYVKNLSENTTEDDLKEIFGKFGT-ITSAVVMRE--GDGRSKCFG 262
Query: 247 FIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------------AESSAASQ 292
F+ + + A + Q+++ KF DD V A ++ E++ Q
Sbjct: 263 FVNFESPDDAAQAVQELNGKKF--DDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQ 320
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
LY+KNL + D+L+ELFA +G IT + G R GFV F A +AL
Sbjct: 321 NTNLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRDSNGVSRGS-GFVAFKSAEDASRAL 379
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT------------YPP----- 395
+ + L +LA+ + D+K +Q S L P +PP
Sbjct: 380 AEMNSKMVGSKPLYVALAQRKEDRKAR--LQAQFSQLRPVPLAPSVGPRMPMFPPGVPGV 437
Query: 396 --HLGYGMVGGAYGALGAGYVPAGFAQPMVYGR--GAAPGGMAMLPMLLPDGRIGYVLQQ 451
L YG A+ G+ GF QP++ G GA P ++PM
Sbjct: 438 GQQLFYGQPPPAFINTQPGF---GFQQPLMPGMRPGAGPMPNFIMPM------------- 481
Query: 452 PGVQQHNPPPQPRSGRGGA 470
VQQ P +P R GA
Sbjct: 482 --VQQGQQPQRPAGRRAGA 498
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 123/258 (47%), Gaps = 23/258 (8%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D L +G V VR+ + ++ + GYA+V + + A++A+E
Sbjct: 40 TSLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARALE 99
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN + GK I+ + +FI N+ ++ + G ++S +
Sbjct: 100 MLNFTPINGKPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFG-NILSCK 158
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D + +++G+ F++Y A+ + K++ ++D V + ++
Sbjct: 159 VATDA--SGESKGYGFVQYERDEAAQAAIDKLNG--MLMNDKKVYVGPFIRKQERDNSPG 214
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSA 348
QVK +YVKNL ++ T+D LKE+F G IT V+ + G RS+ +GFV+F A
Sbjct: 215 QVKFNNVYVKNLSENTTEDDLKEIFGKFGTITSAVV--MREGDGRSKCFGFVNFESPDDA 272
Query: 349 MKALKNTEKYEIDGQVLD 366
+A++ E++G+ D
Sbjct: 273 AQAVQ-----ELNGKKFD 285
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 10/121 (8%)
Query: 87 KHYDGDEEMKVAESDKDDEKK--------KHAELLALPPHGSEVYLGGIPHDASDDDLRH 138
K +D D+E V + K E++ K+ + A + +YL + DD LR
Sbjct: 282 KKFD-DKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDDKLRE 340
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
G +T ++M+ +G ++G FV F++ E AS+A+ E+NS + K + + AQ
Sbjct: 341 LFAEYGTITSCKVMR-DSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLYVALAQR 399
Query: 199 K 199
K
Sbjct: 400 K 400
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 67/151 (44%), Gaps = 26/151 (17%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ VY+ + + ++DDL+ G +T +M+ D G +K + FV F + + A+QA++
Sbjct: 219 NNVYVKNLSENTTEDDLKEIFGKFGTITSAVVMREGD-GRSKCFGFVNFESPDDAAQAVQ 277
Query: 180 ELNSCELKGKKIKCSAAQAKH------------------------RLFIGNVPRNWGEDD 215
ELN + K+ AQ K L++ N+ + +D
Sbjct: 278 ELNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDDK 337
Query: 216 MRKAVTKIGPGVISIELVKDPQNANQNRGFA 246
+R+ + G + S ++++D ++ GF
Sbjct: 338 LRELFAEYGT-ITSCKVMRDSNGVSRGSGFV 367
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 122/262 (46%), Gaps = 18/262 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + + +Y+G + ++ L IG V +R+ + + + GYA+V + +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGE 114
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+EELN +KG+ + +Q + +FI N+ + G +
Sbjct: 115 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 173
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ +D +N N ++G+ F+ Y A + + ++ L++ V + P+
Sbjct: 174 LSCKVAQD-ENGN-SKGYGFVHYETDEAAAQAIKHVNG--MLLNEKKVYVGYHIPKKDRQ 229
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S ++KA +YVKN+ D+T D +ELF G +T + + G+ R +GFV+F
Sbjct: 230 SKFEEMKANFTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQEGKPRG-FGFVNFT 288
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
+A KA+++ + GQ L
Sbjct: 289 THEAAFKAVEDLNGKDFRGQEL 310
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 95/428 (22%), Positives = 164/428 (38%), Gaps = 100/428 (23%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + ++G +KGY FV + T E A+QAI+ +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAAAQAIKHV 207
Query: 182 NSCELKGKKIKCSA------AQAKH--------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ Q+K +++ N+ + +D+ R+ K G V
Sbjct: 208 NGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIGPDVTDDEFRELFEKFG-DV 266
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D + + RGF F+ + H A + + ++ F+ + V A ++
Sbjct: 267 TSSSLARDQEG--KPRGFGFVNFTTHEAAFKAVEDLNGKDFRGQE--LYVGRAQKKHERE 322
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPG 331
E + Q LY+KNL D+ ++L+++FA G IT KV+ + G
Sbjct: 323 EELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLRQMFAEFGPITSAKVMRDTPQEG 382
Query: 332 QERSR---------------------------------------YGFVHFAERSSAMKAL 352
+E + +GFV F+ A KA+
Sbjct: 383 EEEVKDQEKDKENQKEAENEAESAESAEKKAEKKSDKKLGKSKGFGFVCFSNPDDATKAV 442
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAG 412
+ I+ + L +LA+ + +K+ ++ Q GM
Sbjct: 443 AEMNQRMINNKPLYVALAQRKDVRKSQLEASIQARNQLRMQQAAAAAGM----------- 491
Query: 413 YVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGA-- 470
P + QP V+ APG P +P G G QPG+ P P + GR G
Sbjct: 492 --PQQYMQPPVF---YAPGQQ---PGFIPQGGRGMPFPQPGM----PLPNVQGGRPGQFP 539
Query: 471 GSSSSGGR 478
G GGR
Sbjct: 540 GYPQQGGR 547
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 29/158 (18%)
Query: 102 KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAK 161
K D + K E+ A + + VY+ I D +DD+ R + G+VT + + ++ G+ +
Sbjct: 225 KKDRQSKFEEMKA---NFTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQE-GKPR 280
Query: 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------------- 200
G+ FV F T E A +A+E+LN + +G+++ AQ KH
Sbjct: 281 GFGFVNFTTHEAAFKAVEDLNGKDFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKY 340
Query: 201 ---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L+I N+ + ++ +R+ + GP + S ++++D
Sbjct: 341 QGVNLYIKNLDDDVDDEKLRQMFAEFGP-ITSAKVMRD 377
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 86/185 (46%), Gaps = 13/185 (7%)
Query: 197 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 256
Q L++G + + E + + ++IG V SI + +D ++ G+A++ Y +
Sbjct: 56 QNSASLYVGELDPSVTEAMLFELFSQIG-AVASIRVCRDAV-TRRSLGYAYVNYNSTPDG 113
Query: 257 EYSRQKMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKEL 313
E + ++++ + L P + W+ DP ++ + +++KNL I L +
Sbjct: 114 EKALEELN---YTLIKGRPCRIMWSQRDPALRKTGQGN----VFIKNLDVAIDNKALHDT 166
Query: 314 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373
FA G I + + G + YGFVH+ +A +A+K+ ++ + + P+
Sbjct: 167 FAAFGNILSCKVAQDENGNSKG-YGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPK 225
Query: 374 ADQKT 378
D+++
Sbjct: 226 KDRQS 230
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 117/246 (47%), Gaps = 18/246 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D L IG V VR+ + S ++ GYA+V + T A++A+E
Sbjct: 32 TSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALE 91
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN + G+ I+ + +FI N+ ++ + G ++S +
Sbjct: 92 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFG-NILSCK 150
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ DP A +++G+ F++Y A + +K++ ++D V + ++
Sbjct: 151 VATDP--AGESKGYGFVQYERDEAAHAAIEKLNG--MLMNDKKVYVGPFVRKQERDNSPG 206
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSA 348
VK +YVKNL + T+D LKE+F G IT VV+ + G RS+ +GFV+F A
Sbjct: 207 NVKFNNVYVKNLAETTTEDDLKEIFGKFGAITSVVV--MRDGDGRSKCFGFVNFESPDEA 264
Query: 349 MKALKN 354
A+++
Sbjct: 265 ALAVQD 270
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 95/366 (25%), Positives = 149/366 (40%), Gaps = 51/366 (13%)
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
FC G + ++ +GE+KGY FV + E A AIE+LN + KK+
Sbjct: 140 FC-VFGNILSCKVAT-DPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVR 197
Query: 199 K------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFA 246
K + +++ N+ EDD+++ K G + S+ +++D +++ F
Sbjct: 198 KQERDNSPGNVKFNNVYVKNLAETTTEDDLKEIFGKFG-AITSVVVMRD--GDGRSKCFG 254
Query: 247 FIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------------AESSAASQ 292
F+ + + A + Q ++ KF D V A ++ E++ Q
Sbjct: 255 FVNFESPDEAALAVQDLNGKKFS--DKEWYVGRAQKKSEREIELKEKFEKNLQEAADKYQ 312
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
LY+KNL + ++L+ELFA G IT + G R GFV F A +AL
Sbjct: 313 NTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGS-GFVAFKSADDASRAL 371
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAG 412
+ + L +LA+ + D+K +Q S + P VG L G
Sbjct: 372 AEMNNKMVGNKPLYVALAQRKEDRKAR--LQAQFSQMRPVPMAQ----TVGPRMQMLPPG 425
Query: 413 YVPAGFAQPMVYGRGAA-----PG---GMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPR 464
VP G Q M YG+ A PG +P + P G P VQQ P +P
Sbjct: 426 -VPVG--QQMFYGQPPAFINPQPGFGFQQPFMPGMRPGGAPMPNFMMPMVQQGQQPQRPA 482
Query: 465 SGRGGA 470
R GA
Sbjct: 483 GRRAGA 488
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 116/252 (46%), Gaps = 16/252 (6%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G + HD +D L + +V VRI + + ++ GY +V F A++AI+ L
Sbjct: 26 LYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNARDAAKAIDVL 85
Query: 182 NSCELKGKKIKCSAA--------QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
N L GK I+ + +FI N+ + + + G ++S ++
Sbjct: 86 NFTPLNGKTIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALFDTFSAFG-NILSCKIA 144
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQV 293
D + Q++G F+++ + A+ + K++ ++D V + SA S
Sbjct: 145 TDA--SGQSKGHGFVQFESEESAQNAIDKLNG--MLINDKQVYVGPFQRKQDRESALSGT 200
Query: 294 KA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
K +YVKNL + T+ LK +F +G IT V+ G+ + +GFV+FA A KA
Sbjct: 201 KFNNVYVKNLFEATTEADLKSIFGEYGAITSAVVMRDVDGKSKG-FGFVNFANVEDAAKA 259
Query: 352 LKNTEKYEIDGQ 363
++ DG+
Sbjct: 260 VEALNGKNFDGK 271
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 86/364 (23%), Positives = 147/364 (40%), Gaps = 66/364 (18%)
Query: 126 GIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE 185
I H A D F G + +I SG++KG+ FV F ++E A AI++LN
Sbjct: 122 AIDHKALFDTFSAF----GNILSCKIATDA-SGQSKGHGFVQFESEESAQNAIDKLNGML 176
Query: 186 LKGKKIKCSAAQAK------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
+ K++ Q K + +++ N+ E D++ + G + S ++
Sbjct: 177 INDKQVYVGPFQRKQDRESALSGTKFNNVYVKNLFEATTEADLKSIFGEYG-AITSAVVM 235
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP----------R 283
+D +++GF F+ + N A + + ++ F D V A R
Sbjct: 236 RDVDG--KSKGFGFVNFANVEDAAKAVEALNGKNF--DGKEWYVGKAQKKSERELELKER 291
Query: 284 NAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
N +S+ + K LY+KNL + + L+ELF+ G IT + G R GF
Sbjct: 292 NEQSTKETVDKYHGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMRDPSGISRGS-GF 350
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT---SGGSNSQKSALNPTYPPH 396
V F+ A AL + G+ L +LA+ + D++ + S ++ A+ P P
Sbjct: 351 VAFSIAEGASWALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQARPVAITPNVSPR 410
Query: 397 LGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQ 456
+ +G G Q ++YG+ A P ++P GY QQ
Sbjct: 411 MPLYPLGA-----------PGIGQQLLYGQAA--------PSMIPQAAFGY-------QQ 444
Query: 457 HNPP 460
H P
Sbjct: 445 HFVP 448
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
HG+ +Y+ + D++LR G +T ++M+ SG ++G FV F E AS A
Sbjct: 304 HGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMR-DPSGISRGSGFVAFSIAEGASWA 362
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + GK + + AQ K
Sbjct: 363 LGEMNGKMVAGKPLYVALAQRK 384
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 121/267 (45%), Gaps = 18/267 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 108
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KGK + +Q + +FI N+ + G ++
Sbjct: 109 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 167
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L+D V + S
Sbjct: 168 SCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDKKVFVGHHISKKDRQS 223
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +Y+KN+ +++T + +++F G+IT + + G+ R +GFV+F+
Sbjct: 224 KFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRG-FGFVNFST 282
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAK 371
SA A+ EI GQ L A+
Sbjct: 283 HDSAQAAVDEMNDKEIKGQKLYVGRAQ 309
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 101/226 (44%), Gaps = 36/226 (15%)
Query: 130 DASDDD--LRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
DA+ D+ L + G + ++ + + G +KGY FV + T E A+ AI+ +N L
Sbjct: 148 DAAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHVNGMLLN 206
Query: 188 GKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
KK+ +K ++I N+ + +++ RK K G + S L
Sbjct: 207 DKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGE-ITSATLS 265
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
+D + ++RGF F+ + H A+ + +M++ + K V A ++
Sbjct: 266 RDQEG--KSRGFGFVNFSTHDSAQAAVDEMNDKEIK--GQKLYVGRAQKKHEREEELRKQ 321
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL D+ ++L+ELF+ G IT +
Sbjct: 322 YEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKV 367
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 68/122 (55%), Gaps = 9/122 (7%)
Query: 84 DAQKHYDG----DEEMKVAES-DKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRH 138
+A KH +G D+++ V K D + K E+ A + + VY+ I + +D++ R
Sbjct: 195 NAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA---NFTNVYIKNIDQEVTDEEFRK 251
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
+ GE+T + + ++ G+++G+ FV F T + A A++E+N E+KG+K+ AQ
Sbjct: 252 MFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQK 310
Query: 199 KH 200
KH
Sbjct: 311 KH 312
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 121/262 (46%), Gaps = 18/262 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + + +Y+G + ++ L IG V +R+ + + + GYA+V + +
Sbjct: 51 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGE 110
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+EELN +KG+ + +Q + +FI N+ + G +
Sbjct: 111 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 169
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ +D + ++G+ F+ Y A+ + + ++ L++ V P+
Sbjct: 170 LSCKVAQDENGS--SKGYGFVHYETDEAAQQAIKHVNG--MLLNEKKVYVGHHIPKKDRQ 225
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S ++KA +YVKN+ ++T D +ELF HG +T I + G+ R +GFV+F
Sbjct: 226 SKFEEMKANFTNVYVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSRG-FGFVNFT 284
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
+A KA++ ++ GQ L
Sbjct: 285 THEAAAKAVEELNNKDLHGQEL 306
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 85 AQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKS 142
A KH +G E KV +K + ++ + + + VY+ I + +DD+ R +
Sbjct: 199 AIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNISPEVTDDEFRELFER 258
Query: 143 IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G+VT I + +D G+++G+ FV F T E A++A+EELN+ +L G+++ AQ KH
Sbjct: 259 HGDVTSSSIAREQD-GKSRGFGFVNFTTHEAAAKAVEELNNKDLHGQELYVGRAQKKH 315
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 34/228 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + ++G +KGY FV + T E A QAI+ +
Sbjct: 145 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DENGSSKGYGFVHYETDEAAQQAIKHV 203
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ K +A +++ N+ +D+ R+ + G V
Sbjct: 204 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNISPEVTDDEFRELFERHG-DV 262
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S + ++ ++RGF F+ + H A + ++++N L V A ++
Sbjct: 263 TSSSIAREQDG--KSRGFGFVNFTTHEAAAKAVEELNNKD--LHGQELYVGRAQKKHERE 318
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 321
E ++ Q LY+KNL D+ D+L+ +FA G IT
Sbjct: 319 EELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDDKLRIMFAEFGPIT 366
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 128/271 (47%), Gaps = 19/271 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L + G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KG+ I+ +Q +FI N+ + + + G ++S +
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGIGNIFIKNLDDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N +RGF F+ + H A + M+ L+D V R AE
Sbjct: 130 VVCD---ENGSRGFGFVHFETHEAANQAINTMNG--MLLNDRKVFVGHFKSRQEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +YVKN D+ + L+ELF+ GK V + + GQ R +GFV+F +
Sbjct: 185 ARALEFTNIYVKNFEGDMDDECLQELFSQFGKTLSVKVMVDENGQSRG-FGFVNFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A KA+ N E+ G+VL A+ ++++++
Sbjct: 244 AQKAVSNMNGKELGGRVLYVGRAQKRSERQS 274
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + +++ D ++G+ FV F T E A+QAI +
Sbjct: 101 IFIKNLDDSIDNKALYDTFSTFGNILSCKVVC--DENGSRGFGFVHFETHEAANQAINTM 158
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L +K+ +++ +++ N + ++ +++ ++ G
Sbjct: 159 NGMLLNDRKVFVGHFKSRQEREAELGARALEFTNIYVKNFEGDMDDECLQELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S++++ D Q+RGF F+ + H A+ + M+ + L V A R+
Sbjct: 218 LSVKVMVDENG--QSRGFGFVNFEKHEEAQKAVSNMNGKE--LGGRVLYVGRAQKRSERQ 273
Query: 288 SAAS----QVKA----------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
S Q+K LYVKNL I ++L++ F+ +G IT + G
Sbjct: 274 SELKRRFEQMKQERVNRYQGVNLYVKNLDDIIDDEKLRKEFSPYGVITSAKV--MTEGGH 331
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERK 375
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV +++ AEL A + +Y+ D D+ L+ G+ V++M
Sbjct: 167 KVFVGHFKSRQEREAELGARALEFTNIYVKNFEGDMDDECLQELFSQFGKTLSVKVMV-D 225
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
++G+++G+ FV F E A +A+ +N EL G+ + AQ +
Sbjct: 226 ENGQSRGFGFVNFEKHEEAQKAVSNMNGKELGGRVLYVGRAQKR 269
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYVKNLDDIIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVSTKPLYVALAQRK 371
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 121/267 (45%), Gaps = 18/267 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 108
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KGK + +Q + +FI N+ + G ++
Sbjct: 109 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 167
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L+D V + S
Sbjct: 168 SCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDKKVFVGHHISKKDRQS 223
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +Y+KN+ +++T + +++F G+IT + + G+ R +GFV+F+
Sbjct: 224 KFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRG-FGFVNFST 282
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAK 371
SA A+ EI GQ L A+
Sbjct: 283 HDSAQAAVDEMNDKEIKGQKLYVGRAQ 309
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 101/226 (44%), Gaps = 36/226 (15%)
Query: 130 DASDDD--LRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
DA+ D+ L + G + ++ + + G +KGY FV + T E A+ AI+ +N L
Sbjct: 148 DAAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHVNGMLLN 206
Query: 188 GKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
KK+ +K ++I N+ + +++ RK K G + S L
Sbjct: 207 DKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGE-ITSATLS 265
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
+D + ++RGF F+ + H A+ + +M++ + K V A ++
Sbjct: 266 RDQEG--KSRGFGFVNFSTHDSAQAAVDEMNDKEIK--GQKLYVGRAQKKHEREEELRKQ 321
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL D+ ++L+ELF+ G IT +
Sbjct: 322 YEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKV 367
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 68/122 (55%), Gaps = 9/122 (7%)
Query: 84 DAQKHYDG----DEEMKVAES-DKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRH 138
+A KH +G D+++ V K D + K E+ A + + VY+ I + +D++ R
Sbjct: 195 NAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA---NFTNVYIKNIDQEVTDEEFRK 251
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
+ GE+T + + ++ G+++G+ FV F T + A A++E+N E+KG+K+ AQ
Sbjct: 252 MFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQK 310
Query: 199 KH 200
KH
Sbjct: 311 KH 312
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 125/269 (46%), Gaps = 19/269 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+G + ++ L + V +R+ + + + GYA+V F E AS+A+E
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 103
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN ++ + I+ + K +FI N+ + + + + G ++S +
Sbjct: 104 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFG-TILSCK 162
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW----ADPRNAES 287
+ D +++G+ F+++ A+ + K++ L+D V D +ES
Sbjct: 163 VAMDV--VGRSKGYGFVQFEKEETAQAAIDKLNG--MLLNDKQVFVGHFVRRQDRARSES 218
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A +YVKNLPK+IT D LK+ F +G I+ V+ + G RS +GFV+F +
Sbjct: 219 GAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRS-FGFVNFVSPEA 277
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
A A++ + VL A+ ++D+
Sbjct: 278 AAVAVEKMNGISLGEDVLYVGRAQKKSDR 306
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 95/377 (25%), Positives = 157/377 (41%), Gaps = 69/377 (18%)
Query: 130 DASDDD--LRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
DAS D+ L S G + ++ G +KGY FV F +E A AI++LN L
Sbjct: 140 DASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLN 198
Query: 188 GKKI--------------KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
K++ + A + +++ N+P+ +D+++K K G IS +V
Sbjct: 199 DKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGD--ISSAVV 256
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP---------RN 284
Q+ N +R F F+ + + A + +KM+ L ++ V A R
Sbjct: 257 MKDQSGN-SRSFGFVNFVSPEAAAVAVEKMNG--ISLGEDVLYVGRAQKKSDREEELRRK 313
Query: 285 AESSAASQVKAL-----YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
E S+ + L Y+KNL + ++LKE+F+ +G +T + G R +GF
Sbjct: 314 FEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRG-FGF 372
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAK----PQADQKTSGGSNSQKSALNPTYPP 395
V ++ A+ A+K I + L +LA+ QA ++ ++P P
Sbjct: 373 VAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSP 432
Query: 396 HLGY------GMVGGAY-----GALGAGYVPAGFAQPMVYGR------GAAPGG---MAM 435
G+ G + G + G G G VP +QPM YG G PG M
Sbjct: 433 MSGFHHHPPGGPMSGPHHPMFIGHNGQGLVP---SQPMGYGYQVQFMPGMRPGAGPPNFM 489
Query: 436 LPMLL-----PDGRIGY 447
+P L P R+G+
Sbjct: 490 MPFPLQRQTQPGPRVGF 506
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 125/269 (46%), Gaps = 19/269 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+G + ++ L + V +R+ + + + GYA+V F E AS+A+E
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 103
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN ++ + I+ + K +FI N+ + + + + G ++S +
Sbjct: 104 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFG-TILSCK 162
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW----ADPRNAES 287
+ D +++G+ F+++ A+ + K++ L+D V D +ES
Sbjct: 163 VAMDV--VGRSKGYGFVQFEKEETAQAAIDKLNG--MLLNDKQVFVGHFVRRQDRARSES 218
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A +YVKNLPK+IT D LK+ F +G I+ V+ + G RS +GFV+F +
Sbjct: 219 GAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRS-FGFVNFVSPEA 277
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
A A++ + VL A+ ++D+
Sbjct: 278 AAVAVEKMNGISLGEDVLYVGRAQKKSDR 306
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 95/377 (25%), Positives = 157/377 (41%), Gaps = 69/377 (18%)
Query: 130 DASDDD--LRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
DAS D+ L S G + ++ G +KGY FV F +E A AI++LN L
Sbjct: 140 DASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLN 198
Query: 188 GKKI--------------KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
K++ + A + +++ N+P+ +D+++K K G IS +V
Sbjct: 199 DKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGD--ISSAVV 256
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP---------RN 284
Q+ N +R F F+ + + A + +KM+ L ++ V A R
Sbjct: 257 MKDQSGN-SRSFGFVNFVSPEAAAVAVEKMNG--ISLGEDVLYVGRAQKKSDREEELRRK 313
Query: 285 AESSAASQVKAL-----YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
E S+ + L Y+KNL + ++LKE+F+ +G +T + G R +GF
Sbjct: 314 FEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRG-FGF 372
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAK----PQADQKTSGGSNSQKSALNPTYPP 395
V ++ A+ A+K I + L +LA+ QA ++ ++P P
Sbjct: 373 VAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSP 432
Query: 396 HLGY------GMVGGAY-----GALGAGYVPAGFAQPMVYGR------GAAPGG---MAM 435
G+ G + G + G G G VP +QPM YG G PG M
Sbjct: 433 MSGFHHHPPGGPMSGPHHPMFIGHNGQGLVP---SQPMGYGYQVQFMPGMRPGAGPPNFM 489
Query: 436 LPMLL-----PDGRIGY 447
+P L P R+G+
Sbjct: 490 MPFPLQRQTQPGPRVGF 506
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 120/273 (43%), Gaps = 22/273 (8%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + ++ L IG V +R+ + + + GYA+V + +A+E
Sbjct: 44 ASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 103
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+LN +KG+ + +Q + +FI N+ + G V+S +
Sbjct: 104 QLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFG-NVLSCK 162
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS--- 288
+ D +++G+ F+ Y AE + + ++ L+D V R A S
Sbjct: 163 VATDEHG--RSKGYGFVHYETAEAAETAIKAVNG--MLLNDKKVYVGHHISRKASSRERQ 218
Query: 289 -----AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
+Q +YVKNL ++TQD +LF G +T VI + GQ R +GFV+F
Sbjct: 219 SKLEEMKAQFTNIYVKNLDPEVTQDDFVKLFEQFGNVTSAVIQTDEQGQSRG-FGFVNFE 277
Query: 344 ERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
A KA++ E G+ L S A+ +A++
Sbjct: 278 THEEAQKAVETLHDSEYHGRKLFVSRAQKKAER 310
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 115/280 (41%), Gaps = 35/280 (12%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G V ++ + G +KGY FV + T E A AI+ +
Sbjct: 134 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVAT-DEHGRSKGYGFVHYETAEAAETAIKAV 192
Query: 182 NSCELKGKKI--------KCSAAQAKHRL----------FIGNVPRNWGEDDMRKAVTKI 223
N L KK+ K S+ + + +L ++ N+ +DD K +
Sbjct: 193 NGMLLNDKKVYVGHHISRKASSRERQSKLEEMKAQFTNIYVKNLDPEVTQDDFVKLFEQF 252
Query: 224 GPGVISIELVKDPQNANQNRGFAFIEYYNHACA----------EYSRQKM--SNPKFKLD 271
G V S + D Q Q+RGF F+ + H A EY +K+ S + K +
Sbjct: 253 G-NVTSAVIQTDEQG--QSRGFGFVNFETHEEAQKAVETLHDSEYHGRKLFVSRAQKKAE 309
Query: 272 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 331
+ E + Q LY+KNL DI +RL++ F G IT + + G
Sbjct: 310 REEELRKSYEQAKVEKMSKYQGVNLYIKNLEDDIDDERLRQEFEPFGSITSAKVMRDEKG 369
Query: 332 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
+ +GFV F+ A KA+ I + L SLA+
Sbjct: 370 TSKG-FGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQ 408
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 100 SDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGE 159
S K +++ ++L + + +Y+ + + + DD + G VT +++ + G+
Sbjct: 209 SRKASSRERQSKLEEMKAQFTNIYVKNLDPEVTQDDFVKLFEQFGNVTSA-VIQTDEQGQ 267
Query: 160 AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH------------------- 200
++G+ FV F T E A +A+E L+ E G+K+ S AQ K
Sbjct: 268 SRGFGFVNFETHEEAQKAVETLHDSEYHGRKLFVSRAQKKAEREEELRKSYEQAKVEKMS 327
Query: 201 -----RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ + ++ +R+ G + S ++++D + ++GF F+ +
Sbjct: 328 KYQGVNLYIKNLEDDIDDERLRQEFEPFG-SITSAKVMRDEKGT--SKGFGFVCF 379
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Query: 85 AQKHYDGDEEM-KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
AQK + +EE+ K E K ++ K+ G +Y+ + D D+ LR +
Sbjct: 304 AQKKAEREEELRKSYEQAKVEKMSKY--------QGVNLYIKNLEDDIDDERLRQEFEPF 355
Query: 144 GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
G +T ++M+ + G +KG+ FV F + + A++A+ E+N+ + K + S AQ +
Sbjct: 356 GSITSAKVMR-DEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQRR 410
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 122/262 (46%), Gaps = 18/262 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + +Y+G + ++ L IG V +R+ + + + GYA+V +
Sbjct: 110 PQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNATADGE 169
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+E+LN +KG+ + +Q + +FI N+ + G +
Sbjct: 170 KALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 228
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ +D +N N ++G+ F+ Y A + + ++ L++ V + P+
Sbjct: 229 LSCKVAQD-ENGN-SKGYGFVHYETDEAAANAIKHVNG--MLLNEKKVYVGYHIPKKDRQ 284
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S ++KA +YVKN+P ++T + +ELFA +G +T + + G+ R +GFV+F
Sbjct: 285 SKFEEMKANFTNVYVKNIPAEVTDEEFRELFAKYGDVTSSSLARSDEGKSRG-FGFVNFT 343
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
+A KA++ + GQ L
Sbjct: 344 THEAASKAVEELNGKDFRGQEL 365
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 87/178 (48%), Gaps = 28/178 (15%)
Query: 84 DAQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCK 141
+A KH +G E KV +K + ++ + + + VY+ IP + +D++ R
Sbjct: 257 NAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIPAEVTDEEFRELFA 316
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH- 200
G+VT + + D G+++G+ FV F T E AS+A+EELN + +G+++ AQ KH
Sbjct: 317 KYGDVTSSSLAR-SDEGKSRGFGFVNFTTHEAASKAVEELNGKDFRGQELYVGRAQKKHE 375
Query: 201 -----------------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L+I N+ + +D +R+ ++ GP + S ++++D
Sbjct: 376 REEELRRSYEAARQEKANKYQGVNLYIKNLGDDVDDDKLRQMFSEYGP-ITSAKVMRD 432
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 104/232 (44%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + ++G +KGY FV + T E A+ AI+ +
Sbjct: 204 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAAANAIKHV 262
Query: 182 NSCELKGKKIKCSA------AQAKH--------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ Q+K +++ N+P +++ R+ K G V
Sbjct: 263 NGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIPAEVTDEEFRELFAKYG-DV 321
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
S L + + ++RGF F+ + H A + ++++ F+ + V A ++
Sbjct: 322 TSSSLARS--DEGKSRGFGFVNFTTHEAASKAVEELNGKDFRGQE--LYVGRAQKKHERE 377
Query: 288 S-------AASQVKA-------LYVKNLPKDITQDRLKELFAHHGKITKVVI 325
AA Q KA LY+KNL D+ D+L+++F+ +G IT +
Sbjct: 378 EELRRSYEAARQEKANKYQGVNLYIKNLGDDVDDDKLRQMFSEYGPITSAKV 429
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 81/173 (46%), Gaps = 18/173 (10%)
Query: 197 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 256
Q+ L++G + + E + + ++IG V SI + +D ++ G+A++ Y A
Sbjct: 111 QSSASLYVGELDPSVTEAMLFELFSQIG-SVASIRVCRDAVT-RRSLGYAYVNYNATADG 168
Query: 257 EYSRQKMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKEL 313
E + + ++ + L P + W+ DP ++ + +++KNL I L +
Sbjct: 169 EKALEDLN---YTLIKGRPCRIMWSQRDPALRKTGQGN----VFIKNLDVAIDNKALHDT 221
Query: 314 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 366
FA G I + + G + YGFVH+ +A A+K+ ++G +L+
Sbjct: 222 FAAFGNILSCKVAQDENGNSKG-YGFVHYETDEAAANAIKH-----VNGMLLN 268
>gi|224060419|ref|XP_002300190.1| predicted protein [Populus trichocarpa]
gi|222847448|gb|EEE84995.1| predicted protein [Populus trichocarpa]
Length = 689
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 129/282 (45%), Gaps = 22/282 (7%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
+V++GG+ A ++DLR + EVT+VR+ DS K AF+TF T ELA +AI E
Sbjct: 72 KVFVGGLDKYAKEEDLRKVFGGVEEVTKVRL--SWDSESKKRVAFLTFATVELARRAICE 129
Query: 181 LNSCELKGKKIKCSAAQAK---HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDP- 236
++ + GK +C AQ + L++ N+ + W +DD+ + + G I L +P
Sbjct: 130 ISDPVINGK--RCWTAQIQDGSKTLYVPNICKEWTKDDLEDKLAEYGVKNYEI-LTLNPA 186
Query: 237 -QNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS--AASQV 293
+N +NRG+A +++ + A + + + N + + A + S V
Sbjct: 187 RENKEKNRGYAHLDFRSGKDASEALELLKKENVSFGQNRAAKADFSRKYASGNDEIMSHV 246
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
K +Y+ +P+ ++ +K+ G+I KV + P R+ Y +V F +A +
Sbjct: 247 KRVYLDGIPRAWREEHVKKHLKEFGRIVKVELARHIPSAIRTNYCYVTFETHEAAATCVN 306
Query: 354 NTEKYEIDGQVLD-------CSLAKPQADQKTSGGSNSQKSA 388
+DG LAKP+ + G + + S
Sbjct: 307 GV---NVDGLYFRDKRVNAWADLAKPRVRIPSEGTAQASSSV 345
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
H VYL GIP ++ ++ K G + +V + + S Y +VTF T E A+
Sbjct: 245 HVKRVYLDGIPRAWREEHVKKHLKEFGRIVKVELARHIPSAIRTNYCYVTFETHEAAATC 304
Query: 178 IEELN--SCELKGKKIKCSAAQAKHRLFI 204
+ +N + K++ A AK R+ I
Sbjct: 305 VNGVNVDGLYFRDKRVNAWADLAKPRVRI 333
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 118/253 (46%), Gaps = 18/253 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + +D L G+V VR+ + +S + GYA+V + A++A+E
Sbjct: 122 TSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAME 181
Query: 180 ELNSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN L K I+ S +FI N+ + + + G ++S +
Sbjct: 182 ALNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFG-AILSCK 240
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE---SS 288
+ D + Q++GF F++Y A+ + + ++ L ++ P R E SS
Sbjct: 241 VAMD--DIGQSKGFGFVQYEKEESAQSAMKSLNG---MLINDKPVYVGPFLRKQERDNSS 295
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
++ ++VKNL + T++ L ++F+ +G IT V+ G+ R +GFV+F A
Sbjct: 296 DKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRC-FGFVNFESPDDA 354
Query: 349 MKALKNTEKYEID 361
+A++ +I+
Sbjct: 355 ARAVEELNGKKIN 367
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 99/424 (23%), Positives = 181/424 (42%), Gaps = 75/424 (17%)
Query: 92 DEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
++ ++V S++D ++ + +++ + + L + G + ++
Sbjct: 190 NKPIRVMYSNRDPSSRRSGS--------ANIFIKNLDKTIDNKTLHDTFSAFGAILSCKV 241
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC-----------SAAQAK- 199
D G++KG+ FV + +E A A++ LN + K + S+ +AK
Sbjct: 242 AM-DDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSSDKAKF 300
Query: 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 259
+ +F+ N+ + ++D+ K ++ G ++ ++ ++R F F+ + + A +
Sbjct: 301 NNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIG---MDGKSRCFGFVNFESPDDAARA 357
Query: 260 RQKMSNPKFKLDDNAPTVSWADPRN--------------AESSAASQVKALYVKNLPKDI 305
++++ K ++D V A ++ +++ Q + LY+KNL I
Sbjct: 358 VEELNGKK--INDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGI 415
Query: 306 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
T D+L+ELF++ GKIT I + G + GFV F+ R A +AL I G+ L
Sbjct: 416 TDDQLRELFSNFGKITSCKIMRDQNGVSKGS-GFVSFSTREEASQALTEMNGKMISGKPL 474
Query: 366 DCSLAKPQADQKTSGGSNSQKSALNPT------------YPP------HLGYGMVGGAYG 407
+ A+ + ++K +Q S + P YPP L YG A
Sbjct: 475 YVAFAQRKEERKAM--LQAQFSQMRPVPMTPSMTPRLPMYPPMPTLGQQLFYGQAPPAMM 532
Query: 408 ALGAGYVPAGFAQPMVYGRGAAPGGMAMLP-MLLPDGRIGYVLQQPGVQQHNPPPQPRSG 466
GY GF Q +V G PGG A +P +P + QPG QQ P RSG
Sbjct: 533 PPQPGY---GFQQQLV--PGMRPGGGAHMPNYFVP-------VVQPG-QQGPRPGMRRSG 579
Query: 467 RGGA 470
G A
Sbjct: 580 PGSA 583
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 122/267 (45%), Gaps = 18/267 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 45 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 104
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KGK + +Q + +FI N+ + G ++
Sbjct: 105 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 163
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L+D V + S
Sbjct: 164 SCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDKKVFVGHHISKKDRQS 219
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +Y+KNL ++I+++ +++F G+IT + + G+ R +GFV+++
Sbjct: 220 KFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRG-FGFVNYST 278
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAK 371
SA A+ E+ GQ L A+
Sbjct: 279 HDSAQAAVDEMNDKEVKGQKLYVGRAQ 305
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 102/226 (45%), Gaps = 36/226 (15%)
Query: 130 DASDDD--LRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
DA+ D+ L + G + ++ + + G +KGY FV + T E A+ AI+ +N L
Sbjct: 144 DAAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHVNGMLLN 202
Query: 188 GKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
KK+ +K ++I N+ + E++ R+ K G + S L
Sbjct: 203 DKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGE-ITSATLS 261
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
+D + ++RGF F+ Y H A+ + +M++ + K V A ++
Sbjct: 262 RDQEG--KSRGFGFVNYSTHDSAQAAVDEMNDKEVK--GQKLYVGRAQKKHEREEELRKQ 317
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL DI ++L+E+FA +G IT +
Sbjct: 318 YEAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAKV 363
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 68/122 (55%), Gaps = 9/122 (7%)
Query: 84 DAQKHYDG----DEEMKVAES-DKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRH 138
+A KH +G D+++ V K D + K E+ A + + VY+ + + S+++ R
Sbjct: 191 NAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA---NFTNVYIKNLDQEISEEEFRQ 247
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
+ GE+T + + ++ G+++G+ FV + T + A A++E+N E+KG+K+ AQ
Sbjct: 248 MFEKFGEITSATLSRDQE-GKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQK 306
Query: 199 KH 200
KH
Sbjct: 307 KH 308
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 118/249 (47%), Gaps = 22/249 (8%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
+ +Y+G + D L IG V VR+ + S ++ GYA+V + T A++A+
Sbjct: 124 ATSLYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARAL 183
Query: 179 EELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISI 230
E LN + G+ I+ + +FI N+ ++ + G ++S
Sbjct: 184 EMLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALHDTFCVFG-NILSC 242
Query: 231 ELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN----APTVSWADPRNAE 286
++ DP A +++G+ F++Y A + +K++ ++D P V + N+
Sbjct: 243 KVATDP--AGESKGYGFVQYERDEAAHAAIEKLNG--MLMNDKKVYVGPFVRKQERDNSP 298
Query: 287 SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAER 345
S + +YVKNL + T+D LKE+F G IT VV+ + G RS+ +GFV+F
Sbjct: 299 GSV--KFNNVYVKNLAETTTEDDLKEIFGKFGTITSVVV--MRDGDGRSKCFGFVNFESP 354
Query: 346 SSAMKALKN 354
A A+++
Sbjct: 355 DEAALAVQD 363
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 95/366 (25%), Positives = 149/366 (40%), Gaps = 51/366 (13%)
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
FC G + ++ +GE+KGY FV + E A AIE+LN + KK+
Sbjct: 233 FC-VFGNILSCKVAT-DPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVR 290
Query: 199 K------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFA 246
K + +++ N+ EDD+++ K G + S+ +++D +++ F
Sbjct: 291 KQERDNSPGSVKFNNVYVKNLAETTTEDDLKEIFGKFGT-ITSVVVMRD--GDGRSKCFG 347
Query: 247 FIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------------AESSAASQ 292
F+ + + A + Q ++ KF D V A ++ E++ Q
Sbjct: 348 FVNFESPDEAALAVQDLNGKKF--SDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQ 405
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
LY+KNL + ++L+ELFA G IT + G R GFV F A +AL
Sbjct: 406 NTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRDSNGASRGS-GFVAFKSADDASRAL 464
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAG 412
+ + L +LA+ + D+K +Q S + P VG L G
Sbjct: 465 AEMNNKMVGNKPLYVALAQRKEDRKAR--LQAQFSQMRPVPMAQ----TVGPRMQMLPPG 518
Query: 413 YVPAGFAQPMVYGRGAA-----PG---GMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPR 464
VP G Q M YG+ A PG +P + P G P VQQ P +P
Sbjct: 519 -VPVG--QQMFYGQPPAFINPQPGFGFQQPFMPGMRPGGAPMPNFMMPMVQQGQQPQRPA 575
Query: 465 SGRGGA 470
R GA
Sbjct: 576 GRRAGA 581
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 99/379 (26%), Positives = 153/379 (40%), Gaps = 74/379 (19%)
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
FC G + ++ SGE+KGY FV + E A AIE+LN + KK+
Sbjct: 142 FC-VFGNILSCKVATDA-SGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFIR 199
Query: 199 K------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFA 246
K + +F+ N+ EDD+R+ K G + S+ ++++ +++ F
Sbjct: 200 KQERDNSPGNVKFNNVFVKNLSETTTEDDLREIFGKFGT-ITSVVVMRE--GDGRSKCFG 256
Query: 247 FIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------------AESSAASQ 292
F+ + + A + Q ++ KF DD V A ++ E++ Q
Sbjct: 257 FVNFESPDEAALAVQDLNGKKF--DDKEWYVGRAQKKSEREMELKEKFEKNLQETADKYQ 314
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
LY+KNL + ++L+ELFA G IT + G R GFV F A +AL
Sbjct: 315 NTNLYLKNLDDTVDDEKLRELFAEFGAITSCKVMRDSNGASRGS-GFVAFKSAEDASRAL 373
Query: 353 KNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT------------YPP----- 395
+ + L +LA+ + D+K +Q S L P +PP
Sbjct: 374 AEMNNKMVGSKPLYVALAQRKEDRKAR--LQAQFSQLRPVPMAPTVGPRMAMFPPGVPGV 431
Query: 396 --HLGYGMVGGAYGALGAGYVPAGFAQPMVYG-RGAAPGGMAMLPMLLPDGRIGYVLQQP 452
L YG A+ G+ GF QP++ G R AP M+PM
Sbjct: 432 GQQLFYGQPPPAFINPQPGF---GFQQPLMPGMRPGAPMPNFMMPM-------------- 474
Query: 453 GVQQHNPPPQPRSGRGGAG 471
VQQ P +P R G G
Sbjct: 475 -VQQGQQPQRPSGRRAGTG 492
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 118/253 (46%), Gaps = 18/253 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D L IG V VR+ + + ++ GYA+V + T A++A+E
Sbjct: 34 TSLYVGDLDMSVQDAQLFDVFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAARALE 93
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN + G+ I+ + +FI N+ ++ + G ++S +
Sbjct: 94 MLNFTPINGRPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFG-NILSCK 152
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D + +++G+ F++Y A + +K++ ++D V + ++
Sbjct: 153 VATDA--SGESKGYGFVQYERDEAAHAAIEKLNG--MLMNDKKVYVGPFIRKQERDNSPG 208
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSA 348
VK ++VKNL + T+D L+E+F G IT VV+ + G RS+ +GFV+F A
Sbjct: 209 NVKFNNVFVKNLSETTTEDDLREIFGKFGTITSVVV--MREGDGRSKCFGFVNFESPDEA 266
Query: 349 MKALKNTEKYEID 361
A+++ + D
Sbjct: 267 ALAVQDLNGKKFD 279
>gi|348523079|ref|XP_003449051.1| PREDICTED: nucleolin-like isoform 1 [Oreochromis niloticus]
Length = 700
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 137/294 (46%), Gaps = 36/294 (12%)
Query: 93 EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIM 152
E+ + E +D +K+K A L ++ +P A+ DDL+ K + E+R+
Sbjct: 357 EKARSKEGSQDSKKEKDARTL---------FVKNLPFSATADDLKEIFK---DAVEIRVP 404
Query: 153 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------KCSAAQAKHR 201
G+++ KG A+V F+T+ A + +EE E++G+ I A+ A
Sbjct: 405 PGQNTSN-KGIAYVEFKTEADAERTMEETQGSEVQGRSIIIDYTGEKSHMGARASAASKT 463
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L + N+ N E+ ++ K +SI + PQ + +GFAF+E+ + A+ + +
Sbjct: 464 LVVNNLSFNATEEVLQSTFEK----AVSIRI---PQRDGRPKGFAFLEFESTDDAKDALE 516
Query: 262 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 321
+N + ++ + + ++ R+ + K L+VK L +D T++ LK+ F G +
Sbjct: 517 NFNNTE--IEGRSIRLEYSQSRDWNRGNSGPTKTLFVKGLSEDTTEETLKDAF--EGAVA 572
Query: 322 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375
++ G + +GFV F+ A + E EIDG + AKP+ +
Sbjct: 573 ARIVTDRDTGSSKG-FGFVDFSNEDDCKAAKEAMEDGEIDGSKVTLDYAKPKGE 625
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 123/264 (46%), Gaps = 42/264 (15%)
Query: 122 VYLGGIPHDASDDDLR-----HFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
+++G + D+++ F K+ E+T+VR+ G K + +V F ++E +
Sbjct: 287 LFVGNLNSSKDFDEIKASLRKFFSKNGLEITDVRL------GGNKKFGYVDFASEEDLQK 340
Query: 177 AIEELNSCELKGKKIKCSAAQAK------------HRLFIGNVPRNWGEDDMRKAVTKIG 224
+ ELN ++ G+++K A++K LF+ N+P + DD+++
Sbjct: 341 GL-ELNGKKVMGQEVKLEKARSKEGSQDSKKEKDARTLFVKNLPFSATADDLKEIFKD-- 397
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 284
++E+ P N+G A++E+ A AE + ++ ++ + + + ++
Sbjct: 398 ----AVEIRVPPGQNTSNKGIAYVEFKTEADAERTMEETQGS--EVQGRSIIIDYTGEKS 451
Query: 285 ---AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
A +SAAS K L V NL + T++ L+ F K + IP + G+ + + F+
Sbjct: 452 HMGARASAAS--KTLVVNNLSFNATEEVLQSTFE---KAVSIRIPQ-RDGRPKG-FAFLE 504
Query: 342 FAERSSAMKALKNTEKYEIDGQVL 365
F A AL+N EI+G+ +
Sbjct: 505 FESTDDAKDALENFNNTEIEGRSI 528
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 38/199 (19%)
Query: 202 LFIGNVPRNWGEDD----MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN----H 253
LF+GN+ + D+ +RK +K G + + L N+ F ++++ +
Sbjct: 287 LFVGNLNSSKDFDEIKASLRKFFSKNGLEITDVRL-------GGNKKFGYVDFASEEDLQ 339
Query: 254 ACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQ----VKALYVKNLPKDITQDR 309
E + +K+ + KL+ R+ E S S+ + L+VKNLP T D
Sbjct: 340 KGLELNGKKVMGQEVKLEK---------ARSKEGSQDSKKEKDARTLFVKNLPFSATADD 390
Query: 310 LKELFAHHGKITKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKNTEKYEIDGQ--VL 365
LKE+F ++ +P PGQ S G +V F + A + ++ T+ E+ G+ ++
Sbjct: 391 LKEIFKDA---VEIRVP---PGQNTSNKGIAYVEFKTEADAERTMEETQGSEVQGRSIII 444
Query: 366 DCSLAKPQADQKTSGGSNS 384
D + K + S S +
Sbjct: 445 DYTGEKSHMGARASAASKT 463
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 125/269 (46%), Gaps = 19/269 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+G + ++ L + V +R+ + + + GYA+V F E AS+A+E
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 117
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN ++ + I+ + K +FI N+ + + + + G ++S +
Sbjct: 118 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFG-TILSCK 176
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW----ADPRNAES 287
+ D +++G+ F+++ A+ + K++ L+D V D +ES
Sbjct: 177 VAMDV--VGRSKGYGFVQFEKEETAQAAIDKLNG--MLLNDKQVFVGHFVRRQDRARSES 232
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A +YVKNLPK+IT D LK+ F +G I+ V+ + G RS +GFV+F +
Sbjct: 233 GAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRS-FGFVNFVSPEA 291
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
A A++ + VL A+ ++D+
Sbjct: 292 AAVAVEKMNGISLGEDVLYVGRAQKKSDR 320
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 95/377 (25%), Positives = 157/377 (41%), Gaps = 69/377 (18%)
Query: 130 DASDDD--LRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
DAS D+ L S G + ++ G +KGY FV F +E A AI++LN L
Sbjct: 154 DASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLN 212
Query: 188 GKKI--------------KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
K++ + A + +++ N+P+ +D+++K K G IS +V
Sbjct: 213 DKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGD--ISSAVV 270
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP---------RN 284
Q+ N +R F F+ + + A + +KM+ L ++ V A R
Sbjct: 271 MKDQSGN-SRSFGFVNFVSPEAAAVAVEKMNG--ISLGEDVLYVGRAQKKSDREEELRRK 327
Query: 285 AESSAASQVKAL-----YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
E S+ + L Y+KNL + ++LKE+F+ +G +T + G R +GF
Sbjct: 328 FEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRG-FGF 386
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAK----PQADQKTSGGSNSQKSALNPTYPP 395
V ++ A+ A+K I + L +LA+ QA ++ ++P P
Sbjct: 387 VAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSP 446
Query: 396 HLGY------GMVGGAY-----GALGAGYVPAGFAQPMVYGR------GAAPGG---MAM 435
G+ G + G + G G G VP +QPM YG G PG M
Sbjct: 447 MSGFHHHPPGGPMSGPHHPMFIGHNGQGLVP---SQPMGYGYQVQFMPGMRPGAGPPNFM 503
Query: 436 LPMLL-----PDGRIGY 447
+P L P R+G+
Sbjct: 504 MPFPLQRQTQPGPRVGF 520
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 123/268 (45%), Gaps = 23/268 (8%)
Query: 114 ALPPH---GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRT 170
A P H + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 39 AAPAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNS 98
Query: 171 KELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTK 222
E +A+EELN +KGK + +Q + +FI N+ +
Sbjct: 99 SEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAA 158
Query: 223 IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP 282
G ++S ++ +D ++G+ F+ Y A + + ++ L++ V P
Sbjct: 159 FG-NILSCKVAQD--ELGNSKGYGFVHYETAEAANNAIKHVNG--MLLNEKKVFVGHHIP 213
Query: 283 RNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-Y 337
+ S ++KA +YVKN+ D++ D ++LF HG IT I A+ Q +SR +
Sbjct: 214 KKERMSKFEEMKANFTNIYVKNIDLDVSDDDFRDLFEKHGDITSASI--ARDDQGKSRGF 271
Query: 338 GFVHFAERSSAMKALKNTEKYEIDGQVL 365
GFV++ + +A A+ + GQ L
Sbjct: 272 GFVNYIKHEAASAAVDALNDTDFRGQKL 299
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + H + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQ-DELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ K +A +++ N+ + +DD R K G +
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDDDFRDLFEKHG-DI 255
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S + +D Q ++RGF F+ Y H A + +++ F+ V A ++
Sbjct: 256 TSASIARDDQG--KSRGFGFVNYIKHEAASAAVDALNDTDFR--GQKLYVGRAQKKHERE 311
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E + Q LY+KNL D+ ++L+++F G IT +
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKV 363
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 84 DAQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCK 141
+A KH +G E KV +K++ ++ + + + +Y+ I D SDDD R +
Sbjct: 191 NAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDDDFRDLFE 250
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G++T I + D G+++G+ FV + E AS A++ LN + +G+K+ AQ KH
Sbjct: 251 KHGDITSASIAR-DDQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKH 308
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 120/261 (45%), Gaps = 17/261 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KG+ + +Q + +FI N+ + G ++
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 173
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L++ V + S
Sbjct: 174 SCKVAQD--EYGNSKGYGFVHYETAEAATNAIKHVNG--MLLNEKKVFVGHHIAKKDRQS 229
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +YVKN+ +D+T + + LF +G+IT + + +GFV+F++
Sbjct: 230 KFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSD 289
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
+A A++ +YE+ GQ L
Sbjct: 290 HEAASAAVEALNEYELKGQKL 310
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 84 DAQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCK 141
+A KH +G E KV +K + ++ + + + +Y+ + D +D++ R +
Sbjct: 201 NAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFE 260
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
GE+T + + ++G+++G+ FV F E AS A+E LN ELKG+K+ AQ KH
Sbjct: 261 KYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKH 319
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 103/232 (44%), Gaps = 33/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEYGNSKGYGFVHYETAEAATNAIKHV 206
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ AK +++ NV ++ +++ R K G +
Sbjct: 207 NGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGE-I 265
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D + ++RGF F+ + +H A + + ++ +++L V A ++
Sbjct: 266 TSATLSRDNETG-KSRGFGFVNFSDHEAASAAVEALN--EYELKGQKLYVGRAQKKHERE 322
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LY+KNL DI ++L+ELF+ +G IT +
Sbjct: 323 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGNITSAKV 374
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 120/262 (45%), Gaps = 18/262 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + +Y+G + ++ L IG V +R+ + + + GYA+V + +
Sbjct: 61 PQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGE 120
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+EELN +KG+ + +Q + +FI N+ + G +
Sbjct: 121 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 179
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ +D +N N ++G+ F+ Y A + + ++N L++ V + P+
Sbjct: 180 LSCKVAQD-ENGN-SKGYGFVHYETDEAAAQAIKHVNN--MLLNEKKVYVGYHIPKKDRQ 235
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S ++KA +YVKN+ + T + ++LFA +G +T + G+ R +GFV+F
Sbjct: 236 SKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRG-FGFVNFT 294
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
A KA++ E GQ L
Sbjct: 295 THECAAKAVEELNGKEFRGQDL 316
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 105/232 (45%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + ++G +KGY FV + T E A+QAI+ +
Sbjct: 155 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAAAQAIKHV 213
Query: 182 NSCELKGKKIKCSA------AQAKH--------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N+ L KK+ Q+K +++ N+ +++ R K G V
Sbjct: 214 NNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYG-DV 272
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D + ++RGF F+ + H CA + ++++ +F+ D V A ++
Sbjct: 273 TSSSLARDSEG--KSRGFGFVNFTTHECAAKAVEELNGKEFRGQDL--YVGRAQKKHERE 328
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E + Q LY+KNL DI D+L+++F+ +G IT +
Sbjct: 329 EELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDKLRQMFSEYGPITSAKV 380
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 29/158 (18%)
Query: 102 KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAK 161
K D + K E+ A + + +Y+ I +A+D++ R G+VT + + + G+++
Sbjct: 231 KKDRQSKFEEMKA---NFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSE-GKSR 286
Query: 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------------- 200
G+ FV F T E A++A+EELN E +G+ + AQ KH
Sbjct: 287 GFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKY 346
Query: 201 ---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L+I N+ + +D +R+ ++ GP + S ++++D
Sbjct: 347 QGVNLYIKNLADDIDDDKLRQMFSEYGP-ITSAKVMRD 383
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 88/185 (47%), Gaps = 13/185 (7%)
Query: 197 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 256
Q+ L++G + + E + + ++IG V SI + +D ++ G+A++ Y + +
Sbjct: 62 QSSASLYVGELDPSVTEAMLFELFSQIG-SVASIRVCRD-TITRRSLGYAYVNYNSTSDG 119
Query: 257 EYSRQKMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKEL 313
E + ++++ + L P + W+ DP ++ + +++KNL I L +
Sbjct: 120 EKALEELN---YTLIKGRPCRIMWSQRDPALRKTGQGN----VFIKNLDVAIDNKALHDT 172
Query: 314 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQ 373
FA G I + + G + YGFVH+ +A +A+K+ ++ + + P+
Sbjct: 173 FAAFGNILSCKVAQDENGNSKG-YGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPK 231
Query: 374 ADQKT 378
D+++
Sbjct: 232 KDRQS 236
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 120/261 (45%), Gaps = 17/261 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KG+ + +Q + +FI N+ + G ++
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 173
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L++ V + S
Sbjct: 174 SCKVAQD--EYGNSKGYGFVHYETAEAATNAIKHVNG--MLLNEKKVFVGHHIAKKDRQS 229
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +YVKN+ +D+T + + LF +G+IT + + +GFV+F++
Sbjct: 230 KFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSD 289
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
+A A++ +YE+ GQ L
Sbjct: 290 HEAASAAVEALNEYELKGQKL 310
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 84 DAQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCK 141
+A KH +G E KV +K + ++ + + + +Y+ + D +D++ R +
Sbjct: 201 NAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFE 260
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
GE+T + + ++G+++G+ FV F E AS A+E LN ELKG+K+ AQ KH
Sbjct: 261 KYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKH 319
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 128/269 (47%), Gaps = 20/269 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D L +G V VR+ + ++ + GYA+V F + A++A+E
Sbjct: 42 TSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAME 101
Query: 180 ELNSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN + GK I+ S +FI N+ ++ + + G ++S +
Sbjct: 102 MLNFTPVNGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALFDTFSAFGT-ILSCK 160
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN----APTVSWADPRNAES 287
+ + + +++G+ F++Y A+ + +++ L+D P V + N
Sbjct: 161 VATEI--SGESKGYGFVQYEQDESAQNAINELNG--MLLNDKKVYVGPFVRKQERENVFG 216
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
S + +YVKNL + T+D LKE+F G IT V++ A G+ R +GFV+F
Sbjct: 217 SP--KFNNVYVKNLSESTTEDNLKEMFGKFGPITSVIVVRADDGKSRC-FGFVNFENPDD 273
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
A +A+++ ++D + L A+ ++++
Sbjct: 274 AARAVEDLNGKKLDDKELYVGRAQKKSER 302
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 100/423 (23%), Positives = 165/423 (39%), Gaps = 79/423 (18%)
Query: 95 MKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG 154
+++ S++D +K + +++ + + L + G + ++
Sbjct: 113 IRIMYSNRDPSSRKSG--------AANIFIKNLDKSIDNKALFDTFSAFGTILSCKVAT- 163
Query: 155 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------HRL 202
+ SGE+KGY FV + E A AI ELN L KK+ K + +
Sbjct: 164 EISGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNV 223
Query: 203 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 262
++ N+ + ED++++ K GP + S+ +V+ + ++R F F+ + N A + +
Sbjct: 224 YVKNLSESTTEDNLKEMFGKFGP-ITSVIVVR--ADDGKSRCFGFVNFENPDDAARAVED 280
Query: 263 MSNPKFKLDDNAPTVSWADPR--------------NAESSAASQVKALYVKNLPKDITQD 308
++ K LDD V A + N E++ +Q LY+KNL + D
Sbjct: 281 LNGKK--LDDKELYVGRAQKKSEREMQLKEKFEKSNKETADKNQGTNLYLKNLDGSVDDD 338
Query: 309 -RLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367
+LKELFA G IT + G + GFV F A +AL + + L
Sbjct: 339 EKLKELFAEFGTITSCKVMRDSNGVNKGS-GFVAFKSSEDASRALVAMNGKMVGSKPLYV 397
Query: 368 SLAK----------PQADQKTSGGSNSQKSALNPTYPP-------HLGYGMVGGAYGALG 410
+LA+ Q Q + P YPP + YG +
Sbjct: 398 ALAQRKEERRARLQAQFSQMRPVVMPPPVAPRMPMYPPGVPGMGQQMFYGQPPPPFVNPQ 457
Query: 411 AGYVPAGFAQPMVYGR--GAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRG 468
G+ GF Q M+ G G AP ++PM VQQ P +P R
Sbjct: 458 PGF---GFQQHMIPGMRPGVAPMPNFVMPM---------------VQQGQQPQRPSGRRA 499
Query: 469 GAG 471
GAG
Sbjct: 500 GAG 502
>gi|384245275|gb|EIE18770.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 351
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 125/293 (42%), Gaps = 50/293 (17%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G + +D L+ ++G+V E++I+K K +G + GY FV F A A++ L
Sbjct: 24 LYVGNLHPFVTDAMLQEIFSTLGQVGEIKIIKDKLTGLSAGYGFVQFLDHRAADMALQSL 83
Query: 182 NSCELKGKKIKCSAA---------QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
N L G++++ + A ++ ++F+G++ + + + +A G +
Sbjct: 84 NGRVLHGQELRVNWAFQKDQREDSASQFQIFVGDLASDINDKLLCEAFQSCG---CADAR 140
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKM---------------------SNPKFKLD 271
V N +++G+ F+ + A AE + +M S F
Sbjct: 141 VMWDHNTGRSKGYGFVSFKTRADAEQALSQMSGTMLGSRRIRCGWAQHKQENSQASFAAV 200
Query: 272 DNAPTVS--WADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAK 329
D T+S ADP NA +YV NL D++ L+ + G + V I
Sbjct: 201 DRVSTLSRAQADPENAN---------VYVGNLAPDVSDAELQTAVSQFGAVLDVKI---- 247
Query: 330 PGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS 382
+ Y F FA + A++A+ + G+ L CS + QA + GG+
Sbjct: 248 --YRKGGYAFAQFASHADAVRAIVGLSGQNLGGKALKCSWGRHQARKGGPGGA 298
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 294 KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALK 353
KALYV NL +T L+E+F+ G++ ++ I K + YGFV F + +A AL+
Sbjct: 22 KALYVGNLHPFVTDAMLQEIFSTLGQVGEIKIIKDKLTGLSAGYGFVQFLDHRAADMALQ 81
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQ 385
+ + GQ L + A Q DQ+ S Q
Sbjct: 82 SLNGRVLHGQELRVNWAF-QKDQREDSASQFQ 112
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 25/273 (9%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+G + D ++ L IG + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
+N +KG+ I+ + HR +FI N+ + + + G
Sbjct: 71 TMNFEMIKGQPIRIMWS---HRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFG---- 123
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---A 285
SI K N + +RGF F+ + H A+ + M+ L+D V R A
Sbjct: 124 SILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNG--MLLNDRKVFVGHFKSRQKREA 181
Query: 286 ESSA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
E A A +YVKNL D+ + L++LF+ GK V + GQ R +GF++F +
Sbjct: 182 ELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRG-FGFINFEK 240
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+ + E+ GQ+L A+ +A+++
Sbjct: 241 HEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQ 273
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 37/247 (14%)
Query: 160 AKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHR--------------LFIG 205
++G+ FV F T E A +AI +N L +K+ +++ + +++
Sbjct: 137 SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVK 196
Query: 206 NVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 265
N+ + E ++ ++ G S+++++D Q+RGF FI + H A+ + M+
Sbjct: 197 NLRVDMDEQGLQDLFSQFGK-TQSVKVMRDSNG--QSRGFGFINFEKHEEAQKAVDHMNG 253
Query: 266 PKF--KLDDNAPTVSWADPRNAESSAASQVKA----------LYVKNLPKDITQDRLKEL 313
+ +L A+ +N Q+K LYVKNL I DRLKE+
Sbjct: 254 KEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEV 313
Query: 314 FAHHGKITKVVIPPAKPGQERSR---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370
F+ +G VI AK E S +GFV F+ A KA+ + + L +LA
Sbjct: 314 FSTYG-----VITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 371 KPQADQK 377
+ + ++K
Sbjct: 369 QRKEERK 375
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/179 (18%), Positives = 75/179 (41%), Gaps = 29/179 (16%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV +K+ AEL A + +Y+ + D + L+ G+ V++M+
Sbjct: 167 KVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDS 226
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------- 200
+ G+++G+ F+ F E A +A++ +N E+ G+ + AQ +
Sbjct: 227 N-GQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQ 285
Query: 201 ---------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L++ N+ + +D +++ + G I K ++ ++GF F+ +
Sbjct: 286 ERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYG----VITSAKVMTESSHSKGFGFVCF 340
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 11/138 (7%)
Query: 68 EEVEEEEETEDVVDG--IDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPH----GSE 121
E+ EE ++ D ++G + Q Y G + + +++ +E K+ E + G
Sbjct: 239 EKHEEAQKAVDHMNGKEVSGQLLYVGRAQKR---AERQNELKRRFEQMKQERQNRYQGVN 295
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+ + +DD L+ + G +T ++M +S +KG+ FV F + E A++A+ E+
Sbjct: 296 LYVKNLDDSINDDRLKEVFSTYGVITSAKVMT--ESSHSKGFGFVCFSSPEEATKAVTEM 353
Query: 182 NSCELKGKKIKCSAAQAK 199
N + K + + AQ K
Sbjct: 354 NGRIVGTKPLYVALAQRK 371
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 120/261 (45%), Gaps = 17/261 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KG+ + +Q + +FI N+ + G ++
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 173
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L++ V + S
Sbjct: 174 SCKVAQD--EYGNSKGYGFVHYETAEAATNAIKHVNG--MLLNEKKVFVGHHIAKKDRQS 229
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +YVKN+ +D+T + + LF +G+IT + + +GFV+F++
Sbjct: 230 KFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSD 289
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
+A A++ +YE+ GQ L
Sbjct: 290 HEAASAAVEALNEYELKGQKL 310
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 84 DAQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCK 141
+A KH +G E KV +K + ++ + + + +Y+ + D +D++ R +
Sbjct: 201 NAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFE 260
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
GE+T + + ++G+++G+ FV F E AS A+E LN ELKG+K+ AQ KH
Sbjct: 261 KYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKH 319
>gi|348523085|ref|XP_003449054.1| PREDICTED: nucleolin-like isoform 4 [Oreochromis niloticus]
Length = 659
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 137/294 (46%), Gaps = 36/294 (12%)
Query: 93 EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIM 152
E+ + E +D +K+K A L ++ +P A+ DDL+ K + E+R+
Sbjct: 316 EKARSKEGSQDSKKEKDARTL---------FVKNLPFSATADDLKEIFK---DAVEIRVP 363
Query: 153 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS-----------AAQAKHR 201
G+++ KG A+V F+T+ A + +EE E++G+ I A+ A
Sbjct: 364 PGQNTSN-KGIAYVEFKTEADAERTMEETQGSEVQGRSIIIDYTGEKSHMGARASAASKT 422
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L + N+ N E+ ++ K +SI + PQ + +GFAF+E+ + A+ + +
Sbjct: 423 LVVNNLSFNATEEVLQSTFEK----AVSIRI---PQRDGRPKGFAFLEFESTDDAKDALE 475
Query: 262 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 321
+N + ++ + + ++ R+ + K L+VK L +D T++ LK+ F G +
Sbjct: 476 NFNNTE--IEGRSIRLEYSQSRDWNRGNSGPTKTLFVKGLSEDTTEETLKDAF--EGAVA 531
Query: 322 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375
++ G + +GFV F+ A + E EIDG + AKP+ +
Sbjct: 532 ARIVTDRDTGSSKG-FGFVDFSNEDDCKAAKEAMEDGEIDGSKVTLDYAKPKGE 584
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 123/264 (46%), Gaps = 42/264 (15%)
Query: 122 VYLGGIPHDASDDDLR-----HFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
+++G + D+++ F K+ E+T+VR+ G K + +V F ++E +
Sbjct: 246 LFVGNLNSSKDFDEIKASLRKFFSKNGLEITDVRL------GGNKKFGYVDFASEEDLQK 299
Query: 177 AIEELNSCELKGKKIKCSAAQAK------------HRLFIGNVPRNWGEDDMRKAVTKIG 224
+ ELN ++ G+++K A++K LF+ N+P + DD+++
Sbjct: 300 GL-ELNGKKVMGQEVKLEKARSKEGSQDSKKEKDARTLFVKNLPFSATADDLKEIFKD-- 356
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 284
++E+ P N+G A++E+ A AE + ++ ++ + + + ++
Sbjct: 357 ----AVEIRVPPGQNTSNKGIAYVEFKTEADAERTMEETQGS--EVQGRSIIIDYTGEKS 410
Query: 285 ---AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
A +SAAS K L V NL + T++ L+ F K + IP + G+ + + F+
Sbjct: 411 HMGARASAAS--KTLVVNNLSFNATEEVLQSTFE---KAVSIRIPQ-RDGRPKG-FAFLE 463
Query: 342 FAERSSAMKALKNTEKYEIDGQVL 365
F A AL+N EI+G+ +
Sbjct: 464 FESTDDAKDALENFNNTEIEGRSI 487
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 38/199 (19%)
Query: 202 LFIGNVPRNWGEDD----MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN----H 253
LF+GN+ + D+ +RK +K G + + L N+ F ++++ +
Sbjct: 246 LFVGNLNSSKDFDEIKASLRKFFSKNGLEITDVRL-------GGNKKFGYVDFASEEDLQ 298
Query: 254 ACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQ----VKALYVKNLPKDITQDR 309
E + +K+ + KL+ R+ E S S+ + L+VKNLP T D
Sbjct: 299 KGLELNGKKVMGQEVKLEK---------ARSKEGSQDSKKEKDARTLFVKNLPFSATADD 349
Query: 310 LKELFAHHGKITKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKNTEKYEIDGQ--VL 365
LKE+F ++ +P PGQ S G +V F + A + ++ T+ E+ G+ ++
Sbjct: 350 LKEIFKDA---VEIRVP---PGQNTSNKGIAYVEFKTEADAERTMEETQGSEVQGRSIII 403
Query: 366 DCSLAKPQADQKTSGGSNS 384
D + K + S S +
Sbjct: 404 DYTGEKSHMGARASAASKT 422
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 129/269 (47%), Gaps = 19/269 (7%)
Query: 121 EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEE 180
+Y+G + + ++ +LR S+G + V + + +G + Y +V F A +A+
Sbjct: 20 SLYVGDLDPEVTEMNLRTVFSSMGPIRNVHLCRCSLTGRSLCYGYVNFYRPYDAYKALSN 79
Query: 181 LNSCELKGKKIK--------CSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
LN LKGK ++ C+ L++ N+ + ++ +K G ++S ++
Sbjct: 80 LNHTYLKGKLMRIMWCQRNPCARKSGIGNLYVKNLDASIDSAGLQSLFSKFGT-ILSCKV 138
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS- 291
V++ +++G+ F+++ + A +R + + K + VS ++ ++A S
Sbjct: 139 VEE---HGKSKGYGFVQFDSEDSALAARTALHDTMLK--EKKLYVSRFVKKSERTTATSY 193
Query: 292 ---QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
+ LYVKNL KD+TQD +F+ G+I VI G+ R +GFV F A
Sbjct: 194 DELKFTNLYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQDHNGKSRG-FGFVDFESPEDA 252
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQK 377
KA+ Y+++ + L A+ +A++K
Sbjct: 253 KKAVDALNGYQLESRTLFVGRAQAKAERK 281
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 126/280 (45%), Gaps = 38/280 (13%)
Query: 130 DASDDD--LRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
DAS D L+ G + ++++ + G++KGY FV F +++ A A L+ LK
Sbjct: 115 DASIDSAGLQSLFSKFGTILSCKVVE--EHGKSKGYGFVQFDSEDSALAARTALHDTMLK 172
Query: 188 GKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
KK+ S K L++ N+ ++ +D + G +IS ++
Sbjct: 173 EKKLYVSRFVKKSERTTATSYDELKFTNLYVKNLSKDMTQDAFHNMFSAFGE-IISAVIM 231
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR---------- 283
+D + ++RGF F+++ + A+ + ++ ++L+ V A +
Sbjct: 232 QD--HNGKSRGFGFVDFESPEDAKKAVDALNG--YQLESRTLFVGRAQAKAERKKILQHE 287
Query: 284 --NAESSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
+ ++ + KA LYVKNL I D+L+ELF+ GKI + G R +GF
Sbjct: 288 YKDIFNTHMEKFKASNLYVKNLALCIDNDKLQELFSCSGKIVSAKVMRYDNGASRG-FGF 346
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 379
V F+ A KAL G+ L ++A+ + D++ +
Sbjct: 347 VCFSSPEEAKKALNALNGAVFQGKSLYVAMAQCKRDRQLA 386
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 93 EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIM 152
E K+ + + D H E S +Y+ + +D L+ G++ ++M
Sbjct: 279 ERKKILQHEYKDIFNTHMEKFK----ASNLYVKNLALCIDNDKLQELFSCSGKIVSAKVM 334
Query: 153 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
+ D+G ++G+ FV F + E A +A+ LN +GK + + AQ K
Sbjct: 335 R-YDNGASRGFGFVCFSSPEEAKKALNALNGAVFQGKSLYVAMAQCK 380
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 118/262 (45%), Gaps = 18/262 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + + +Y+G + ++ L IG V +R+ + + + GYA+V +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGE 114
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+EELN +KG+ + +Q + +FI N+ + G +
Sbjct: 115 KALEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 173
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ +D A ++G+ F+ Y A + + ++ L++ V P+
Sbjct: 174 LSCKVAQDETGA--SKGYGFVHYETDEAASQAIKHVNG--MLLNEKKVYVGHHIPKKDRQ 229
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S ++KA +YVKN+ D+T+D ++LF +G +T + + G+ R +GFV+F
Sbjct: 230 SKFEEMKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRG-FGFVNFT 288
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
SA KA+ + GQ L
Sbjct: 289 THESAFKAVDELNNKDFHGQDL 310
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 101/232 (43%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + ++G +KGY FV + T E ASQAI+ +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DETGASKGYGFVHYETDEAASQAIKHV 207
Query: 182 NSCELKGKKIKCSA------AQAKH--------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ Q+K +++ N+ + EDD R+ K G V
Sbjct: 208 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIAADVTEDDFRQLFEKYG-DV 266
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D + ++RGF F+ + H A + +++N F D V A ++
Sbjct: 267 TSSSLARDQEG--KSRGFGFVNFTTHESAFKAVDELNNKDFHGQD--LYVGRAQKKHERE 322
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E + Q LY+KNL D+ D+L+E+F G IT +
Sbjct: 323 EELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDKLREMFKDFGSITSAKV 374
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 85 AQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKS 142
A KH +G E KV +K + ++ + + + VY+ I D ++DD R +
Sbjct: 203 AIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIAADVTEDDFRQLFEK 262
Query: 143 IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G+VT + + ++ G+++G+ FV F T E A +A++ELN+ + G+ + AQ KH
Sbjct: 263 YGDVTSSSLARDQE-GKSRGFGFVNFTTHESAFKAVDELNNKDFHGQDLYVGRAQKKH 319
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 121/267 (45%), Gaps = 21/267 (7%)
Query: 114 ALPPH---GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRT 170
A P H + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 39 AAPAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNS 98
Query: 171 KELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTK 222
E +A+EELN +KGK + +Q + +FI N+ +
Sbjct: 99 SEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAA 158
Query: 223 IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP 282
G ++S ++ +D ++G+ F+ Y A + + ++ L++ V P
Sbjct: 159 FG-NILSCKVAQD--ELGNSKGYGFVHYETAEAANNAIKHVNG--MLLNEKKVFVGHHIP 213
Query: 283 RNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 338
+ S ++KA +YVKN+ D++ + +ELF HG IT I + G+ R +G
Sbjct: 214 KKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRG-FG 272
Query: 339 FVHFAERSSAMKALKNTEKYEIDGQVL 365
FV++ + +A A+ + GQ L
Sbjct: 273 FVNYIKHEAASAAVDALNDTDFRGQKL 299
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 105/243 (43%), Gaps = 36/243 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + H + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQ-DELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ K +A +++ N+ + +++ R+ K G +
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHG-DI 255
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S + +D Q ++RGF F+ Y H A + +++ F+ V A ++
Sbjct: 256 TSASIARDEQG--KSRGFGFVNYIKHEAASAAVDALNDTDFR--GQKLYVGRAQKKHERE 311
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKV-VIPPAKPGQ 332
E + Q LY+KNL D+ ++L+++F G IT V+ A P
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPA- 370
Query: 333 ERS 335
ERS
Sbjct: 371 ERS 373
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 84 DAQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCK 141
+A KH +G E KV +K++ ++ + + + +Y+ I D SD++ R +
Sbjct: 191 NAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFE 250
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G++T I + + G+++G+ FV + E AS A++ LN + +G+K+ AQ KH
Sbjct: 251 KHGDITSASIAR-DEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKH 308
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 119/262 (45%), Gaps = 19/262 (7%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 52 PHSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KGK + +Q + +FI N+ + G ++
Sbjct: 112 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L++ V + S
Sbjct: 171 SCKVAQD--EFGNSKGYGFVHYETAEAATNAIKHVNG--MLLNEKKVFVGHHIAKKDRQS 226
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIP-PAKPGQERSRYGFVHFA 343
++KA +YVKNL ++T + +ELF +G IT I ++ G+ R +GFV+F
Sbjct: 227 KFEEMKANFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRG-FGFVNFV 285
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
+ SA A++ E GQ L
Sbjct: 286 KHESAAAAVEELNDKEFKGQKL 307
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 33/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAATNAIKHV 203
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ AK +++ N+ ++ R+ K G +
Sbjct: 204 NGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTEVTNEEFRELFGKYGD-I 262
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S + D + ++RGF F+ + H A + +++++ +FK V A ++
Sbjct: 263 TSASITHDSETG-KSRGFGFVNFVKHESAAAAVEELNDKEFK--GQKLYVGRAQKKHERE 319
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL DI ++L++LF G IT +
Sbjct: 320 EELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFIGFGNITSARV 371
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 84 DAQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCK 141
+A KH +G E KV +K + ++ + + + VY+ + + ++++ R
Sbjct: 198 NAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTEVTNEEFRELFG 257
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G++T I ++G+++G+ FV F E A+ A+EELN E KG+K+ AQ KH
Sbjct: 258 KYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQKKH 316
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 121/260 (46%), Gaps = 17/260 (6%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
+ + +Y+G + ++ L SIG+V +R+ + + + GYA+V + + + +A
Sbjct: 55 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSDDGEKA 114
Query: 178 IEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
+EELN +KGK + +Q + +FI N+ + G ++S
Sbjct: 115 LEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFG-NILS 173
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSA 289
++ +D +N N ++G+ F+ Y A + + ++ L++ V P+ S
Sbjct: 174 CKVAQD-ENGN-SKGYGFVHYETAEAANNAIKAVNG--MLLNEKKVFVGHHIPKKDRMSK 229
Query: 290 ASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAER 345
++KA +YVKN+ ++T D +ELF +G+IT + + +GFV+F +
Sbjct: 230 FEEMKANFTNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKSRGFGFVNFVKH 289
Query: 346 SSAMKALKNTEKYEIDGQVL 365
SA KA+ + GQ L
Sbjct: 290 ESAAKAVDELNDKDWKGQKL 309
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 102 KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAK 161
K D K E+ A + + VY+ I + +DD+ R + G++T + ++G+++
Sbjct: 223 KKDRMSKFEEMKA---NFTNVYVKNIDLEVTDDEFRELFEKYGQITSASLAHDNETGKSR 279
Query: 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G+ FV F E A++A++ELN + KG+K+ AQ KH
Sbjct: 280 GFGFVNFVKHESAAKAVDELNDKDWKGQKLYVGRAQKKH 318
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 37/229 (16%)
Query: 125 GGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSC 184
G I + A D F G + ++ + ++G +KGY FV + T E A+ AI+ +N
Sbjct: 154 GAIDNKALHDTFAAF----GNILSCKVAQ-DENGNSKGYGFVHYETAEAANNAIKAVNGM 208
Query: 185 ELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISI 230
L KK+ K +A +++ N+ +D+ R+ K G + S
Sbjct: 209 LLNEKKVFVGHHIPKKDRMSKFEEMKANFTNVYVKNIDLEVTDDEFRELFEKYGQ-ITSA 267
Query: 231 ELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN------ 284
L D + ++RGF F+ + H A + ++++ +K V A ++
Sbjct: 268 SLAHDNETG-KSRGFGFVNFVKHESAAKAVDELNDKDWK--GQKLYVGRAQKKHEREEEL 324
Query: 285 --------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
AE + Q LYVKNL D+ ++L+++FA G IT +
Sbjct: 325 RKQYEAARAEKQSKYQGVNLYVKNLHDDVDDEKLRDMFAPFGTITSAKV 373
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 122/268 (45%), Gaps = 18/268 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + + +Y+G + ++ L IG V +R+ + + + GYA+V +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATADGE 114
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+EELN +KG+ + +Q + +FI N+ + G +
Sbjct: 115 KALEELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 173
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ +D +N N ++G+ F+ Y A + + ++ L++ V P+
Sbjct: 174 LSCKVAQD-ENGN-SKGYGFVHYETDEAASQAIKHVNG--MLLNEKKVYVGHHIPKKDRQ 229
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S ++KA +YVKN+ D+T+D +ELF G +T + + G+ R +GFV+F
Sbjct: 230 SKFEEMKANFTNVYVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKSRG-FGFVNFT 288
Query: 344 ERSSAMKALKNTEKYEIDGQVLDCSLAK 371
SA KA+ + + GQ L A+
Sbjct: 289 THESASKAVDDLNGKDFHGQDLYVGRAQ 316
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 100/232 (43%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + ++G +KGY FV + T E ASQAI+ +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAASQAIKHV 207
Query: 182 NSCELKGKKIKCSA------AQAKH--------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ Q+K +++ N+ + EDD R+ K G V
Sbjct: 208 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIAPDVTEDDFRELFEKFGD-V 266
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D + ++RGF F+ + H A + ++ F D V A ++
Sbjct: 267 TSSSLARDQEG--KSRGFGFVNFTTHESASKAVDDLNGKDFHGQD--LYVGRAQKKHERE 322
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E + Q LY+KNL D+ D+L+++F+ G IT +
Sbjct: 323 EELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDKLRQMFSEFGPITSAKV 374
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 85 AQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKS 142
A KH +G E KV +K + ++ + + + VY+ I D ++DD R +
Sbjct: 203 AIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIAPDVTEDDFRELFEK 262
Query: 143 IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G+VT + + ++ G+++G+ FV F T E AS+A+++LN + G+ + AQ KH
Sbjct: 263 FGDVTSSSLARDQE-GKSRGFGFVNFTTHESASKAVDDLNGKDFHGQDLYVGRAQKKH 319
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 127/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N LKG+ I+ +Q +FI N+ + + + G ++S +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+ D + RGF F+ + H A+ + M+ L+D V R AE
Sbjct: 130 VACDKHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDRKVFVGHFKSRRERAAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +YVKNLP D+ + L++LF+ GK+ V + G+ R +GFV+F +
Sbjct: 185 ARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDNSGRSRC-FGFVNFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+ + E+ G++L S A+ + +++
Sbjct: 244 AQKAVVHMNGKEVSGRLLYASRAQKRVERQ 273
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 116/262 (44%), Gaps = 33/262 (12%)
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH- 200
+ G + ++ D ++G+ FV F T E A QAI +N L +K+ +++
Sbjct: 121 TFGNILSCKV--ACDKHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 201 -------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAF 247
+++ N+P + E ++ ++ G ++S+++++D N+ ++R F F
Sbjct: 179 RAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFG-KMLSVKVMRD--NSGRSRCFGF 235
Query: 248 IEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA---------- 295
+ + H A+ + M+ + +L + + +N Q+K
Sbjct: 236 VNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRKFEQMKQDRLSRYQGVN 295
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
LYVKNL I D+L++ F+ +G IT + G +GFV F+ A KA+
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKV--MTEGSHSKGFGFVCFSSPEEATKAVTEM 353
Query: 356 EKYEIDGQVLDCSLAKPQADQK 377
+ + L +LA+ + ++K
Sbjct: 354 NGRIVGTKPLYVALAQRKEERK 375
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 75/179 (41%), Gaps = 29/179 (16%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV +++ AEL A + +Y+ +P D + L+ G++ V++M+
Sbjct: 167 KVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMR-D 225
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK---------------- 199
+SG ++ + FV F E A +A+ +N E+ G+ + S AQ +
Sbjct: 226 NSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRKFEQMKQ 285
Query: 200 --------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L++ N+ + +D +RK + G I K + ++GF F+ +
Sbjct: 286 DRLSRYQGVNLYVKNLDDSIDDDKLRKEFSPYG----VITSAKVMTEGSHSKGFGFVCF 340
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 17/168 (10%)
Query: 33 VDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGIDAQKHYDGD 92
V + DN V +E+ EE ++ V + +E + ++ AQK +
Sbjct: 220 VKVMRDNSGRSRCFGFVNFEKHEEAQKAVVH------MNGKEVSGRLLYASRAQKRVERQ 273
Query: 93 EEMKVA-ESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
E+K E K D ++ G +Y+ + DD LR G +T ++
Sbjct: 274 NELKRKFEQMKQDRLSRY--------QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV 325
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
M + +KG+ FV F + E A++A+ E+N + K + + AQ K
Sbjct: 326 MT--EGSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 120/257 (46%), Gaps = 22/257 (8%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + +D L +G+V VR+ + + + GY +V + + A++A++
Sbjct: 12 TSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 71
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
LN L K I+ + HR +FI N+ + + + G ++
Sbjct: 72 VLNFTPLNNKPIRIMYS---HRDPSIRKSGMANIFIKNLDKGIDHKALHDTFSSFG-NIL 127
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ D + Q++G+ F+++ + A+ + K++ ++D V +
Sbjct: 128 SCKVATDA--SGQSKGYGFVQFDSEEAAQNAIDKLNG--MLVNDKQVYVGHFLRKQDRDG 183
Query: 289 AASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346
A +K ++VKNL + T + LK +FA HG IT V+ G+ + +GFV+F
Sbjct: 184 ALYSIKFNNVFVKNLAESTTDEELKNIFAEHGAITSAVVMRDADGKSKC-FGFVNFESAD 242
Query: 347 SAMKALKNTEKYEIDGQ 363
A KA++ +IDG+
Sbjct: 243 DAAKAVEALNGKKIDGE 259
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 145/349 (41%), Gaps = 54/349 (15%)
Query: 126 GIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE 185
GI H A D F G + ++ SG++KGY FV F ++E A AI++LN
Sbjct: 110 GIDHKALHDTFSSF----GNILSCKVATDA-SGQSKGYGFVQFDSEEAAQNAIDKLNGML 164
Query: 186 LKGKKIKCSAAQAK------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
+ K++ K + +F+ N+ + +++++ + G + S ++
Sbjct: 165 VNDKQVYVGHFLRKQDRDGALYSIKFNNVFVKNLAESTTDEELKNIFAEHG-AITSAVVM 223
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
+D +++ F F+ + + A + + ++ K +D V A ++
Sbjct: 224 RDADG--KSKCFGFVNFESADDAAKAVEALNGKK--IDGEEWYVGKAQKKSERELELKGR 279
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
E+ Q LY+KNL I ++LKELF+ G IT + G R GF
Sbjct: 280 FEQSMKETVDKFQGLNLYIKNLDDSINDEKLKELFSDFGAITSCKVMRDPSGISRGS-GF 338
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP-TYPPHLG 398
V F+ A +AL + + L +LA+ + +++ +Q S + P T P +
Sbjct: 339 VAFSTPEEASRALAEMNGKMLISKPLYVALAQRKEERRAR--LQAQFSQMRPVTMAPSVA 396
Query: 399 YGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGY 447
M GA G G Q +YG+G AM+P P GY
Sbjct: 397 SRMPMYPPGAPGMG-------QQFLYGQGPP----AMMP---PQAGFGY 431
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N LKG+ I+ +Q +FI N+ + + + G ++S +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D + RGF F+ + + A+ + M+ L+D V R AE
Sbjct: 130 VVCDEHGS---RGFGFVHFETYEAAQQAINTMNG--MLLNDRKVFVGHFKSRRERAAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +YVKNLP D+ + L++LF+ GK+ V + G+ R +GFV+F +
Sbjct: 185 ARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDSSGRSRC-FGFVNFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+ + E+ G++L S A+ + +++
Sbjct: 244 AQKAVVHMNGKEVSGRLLYASRAQKRVERQ 273
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/282 (19%), Positives = 122/282 (43%), Gaps = 33/282 (11%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + +++ D ++G+ FV F T E A QAI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVC--DEHGSRGFGFVHFETYEAAQQAINTM 158
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L +K+ +++ +++ N+P + E ++ ++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFG-KM 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSWADPRNA 285
+S+++++D ++ ++R F F+ + H A+ + M+ + +L + + +N
Sbjct: 218 LSVKVMRD--SSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNE 275
Query: 286 ESSAASQVKA----------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
Q+K LYVKNL I +L++ F+ +G IT + G
Sbjct: 276 LKRRFEQMKQDRLSRYQGVNLYVKNLDDSIDDGKLRKEFSPYGVITSAKV--MTEGSHSK 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERK 375
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV +++ AEL A + +Y+ +P D + L+ G++ V++M+
Sbjct: 167 KVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMR-D 225
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
SG ++ + FV F E A +A+ +N E+ G+ + S AQ +
Sbjct: 226 SSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKR 269
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 17/152 (11%)
Query: 49 VEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGIDAQKHYDGDEEMKV-AESDKDDEKK 107
V +E+ EE ++ V + +E + ++ AQK + E+K E K D
Sbjct: 236 VNFEKHEEAQKAVVH------MNGKEVSGRLLYASRAQKRVERQNELKRRFEQMKQDRLS 289
Query: 108 KHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVT 167
++ G +Y+ + D LR G +T ++M + +KG+ FV
Sbjct: 290 RY--------QGVNLYVKNLDDSIDDGKLRKEFSPYGVITSAKVMT--EGSHSKGFGFVC 339
Query: 168 FRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
F + E A++A+ E+N + K + + AQ K
Sbjct: 340 FSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 115/256 (44%), Gaps = 14/256 (5%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + S+ L IG V+ +R+ + + + GYA+V F E AIE
Sbjct: 43 ASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIE 102
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+LN +KG+ + +Q +FI N+ + + + + G ++S +
Sbjct: 103 KLNYTAIKGRPCRIMWSQRDPSMRKKGSGNIFIKNLHPDIDNKTLYETFSVFG-NILSCK 161
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD--NAPTVSWADPRNAESSA 289
+ D +++GF F+ + N A + ++ + AP VS D ++ A
Sbjct: 162 IAND--ETGKSKGFGFVHFENEEAAREAIDAINGMLLNGQEVYVAPHVSKKDRQSKLDEA 219
Query: 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
+ +YVKNL + T++ + LF +G IT V + G+ R +GFV F A+
Sbjct: 220 RANFTNVYVKNLDLEATEEDFENLFKPYGTITSVALEKDAEGKSRG-FGFVDFENHEDAV 278
Query: 350 KALKNTEKYEIDGQVL 365
KA++ E GQ L
Sbjct: 279 KAVEALNDTEYKGQTL 294
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 146/340 (42%), Gaps = 44/340 (12%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + D + L G + +I ++G++KG+ FV F +E A +AI+ +
Sbjct: 133 IFIKNLHPDIDNKTLYETFSVFGNILSCKI-ANDETGKSKGFGFVHFENEEAAREAIDAI 191
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L G+++ K A+A +++ N+ E+D G +
Sbjct: 192 NGMLLNGQEVYVAPHVSKKDRQSKLDEARANFTNVYVKNLDLEATEEDFENLFKPYGT-I 250
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR---- 283
S+ L KD + ++RGF F+++ NH A + + +++ ++K V A +
Sbjct: 251 TSVALEKDAEG--KSRGFGFVDFENHEDAVKAVEALNDTEYK--GQTLYVGRAQKKYERL 306
Query: 284 ----------NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
E A Q L++KNL I ++LKE FA G IT + + G+
Sbjct: 307 QELKKQYQASKLEKLAKYQGINLFIKNLDDSIDDEKLKEEFAPFGTITSARVMRTENGKS 366
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 393
+ +GFV F+ A +A+ + + G+ L ++A+ + +++ Q A N
Sbjct: 367 KG-FGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ--ARN--- 420
Query: 394 PPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGM 433
+ Y A A AG +P F PM YG P GM
Sbjct: 421 --QMRYQQATAAAAAAAAG-IPGQFMPPMFYGV-VPPRGM 456
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 5/131 (3%)
Query: 70 VEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPH 129
E EE + +D I+ +G E K D + K E A + + VY+ +
Sbjct: 178 FENEEAAREAIDAINGM-LLNGQEVYVAPHVSKKDRQSKLDEARA---NFTNVYVKNLDL 233
Query: 130 DASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGK 189
+A+++D + K G +T V + K + G+++G+ FV F E A +A+E LN E KG+
Sbjct: 234 EATEEDFENLFKPYGTITSVALEKDAE-GKSRGFGFVDFENHEDAVKAVEALNDTEYKGQ 292
Query: 190 KIKCSAAQAKH 200
+ AQ K+
Sbjct: 293 TLYVGRAQKKY 303
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 120/261 (45%), Gaps = 17/261 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 71 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 130
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KG+ + +Q + +FI N+ + G ++
Sbjct: 131 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 189
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L++ V + S
Sbjct: 190 SCKVAQD--EYGNSKGYGFVHYETAEAATNAIKHVNG--MLLNEKKVFVGHHIAKKDRQS 245
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +YVKN+ +D+T + + LF +G+IT + + +GFV+F++
Sbjct: 246 KFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSD 305
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
+A A++ +YE+ GQ L
Sbjct: 306 HEAASAAVEALNEYELKGQKL 326
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 84 DAQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCK 141
+A KH +G E KV +K + ++ + + + +Y+ + D +D++ R +
Sbjct: 217 NAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFE 276
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
GE+T + + ++G+++G+ FV F E AS A+E LN ELKG+K+ AQ KH
Sbjct: 277 KYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKH 335
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 121/267 (45%), Gaps = 21/267 (7%)
Query: 114 ALPPH---GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRT 170
A P H + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 39 AAPAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNS 98
Query: 171 KELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTK 222
E +A+EELN +KGK + +Q + +FI N+ +
Sbjct: 99 SEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAA 158
Query: 223 IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP 282
G ++S ++ +D ++G+ F+ Y A + + ++ L++ V P
Sbjct: 159 FG-NILSCKVAQD--ELGNSKGYGFVHYETAEAANNAIKHVNG--MLLNEKKVFVGHHIP 213
Query: 283 RNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 338
+ S ++KA +YVKN+ D++ + +ELF HG IT I + G+ R +G
Sbjct: 214 KKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRG-FG 272
Query: 339 FVHFAERSSAMKALKNTEKYEIDGQVL 365
FV++ + +A A+ + GQ L
Sbjct: 273 FVNYIKHEAASAAVDALNDTDFRGQKL 299
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 105/243 (43%), Gaps = 36/243 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + H + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQ-DELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ K +A +++ N+ + +++ R+ K G +
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFEKHG-DI 255
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S + +D Q ++RGF F+ Y H A + +++ F+ V A ++
Sbjct: 256 TSASIARDEQG--KSRGFGFVNYIKHEAASAAVDALNDTDFR--GQKLYVGRAQKKHERE 311
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKV-VIPPAKPGQ 332
E + Q LY+KNL D+ ++L+++F G IT V+ A P
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVMRDAMPA- 370
Query: 333 ERS 335
ERS
Sbjct: 371 ERS 373
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 84 DAQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCK 141
+A KH +G E KV +K++ ++ + + + +Y+ I D SD++ R +
Sbjct: 191 NAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEEFRELFE 250
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G++T I + + G+++G+ FV + E AS A++ LN + +G+K+ AQ KH
Sbjct: 251 KHGDITSASIAR-DEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKH 308
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 123/252 (48%), Gaps = 18/252 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + +D L +G+V VR+ + + + GY +V + A++A++
Sbjct: 40 TSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD 99
Query: 180 ELNSCELKGKKIKCSAA--------QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
ELN L GK I+ + +FI N+ ++ + + G ++S +
Sbjct: 100 ELNFTPLNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFG-NILSCK 158
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS-WADPRNAESSA- 289
+ D + Q+RG+ F+++ N A+ + K++ L+D V + + ES+A
Sbjct: 159 VATD--SLGQSRGYGFVQFDNEESAKSAIDKLNG--MLLNDKQVFVGPFLRKQERESTAD 214
Query: 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
++ +YVKNL + T+D LK++F G IT + G+ + +GFV+F + A
Sbjct: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKC-FGFVNFDDPDDAA 273
Query: 350 KALK--NTEKYE 359
++++ N +K++
Sbjct: 274 RSVEALNGKKFD 285
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 129/303 (42%), Gaps = 37/303 (12%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDS-GEAKGYAFVTFRTKELASQAIEE 180
+++ + + L + G + ++ DS G+++GY FV F +E A AI++
Sbjct: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKV--ATDSLGQSRGYGFVQFDNEESAKSAIDK 187
Query: 181 LNSCELKGKKIKCSAAQAK------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
LN L K++ K + +++ N+ EDD++K + G +
Sbjct: 188 LNGMLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGI-IT 246
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---- 284
S +++D +++ F F+ + + A S + ++ KF DD V A +
Sbjct: 247 STAVMRDADG--KSKCFGFVNFDDPDDAARSVEALNGKKF--DDKEWYVGKAQKKYEREM 302
Query: 285 ----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 334
E++ + LYVKNL I+ D+LKELF+ G IT + G R
Sbjct: 303 ELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISR 362
Query: 335 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYP 394
GFV F+ A KAL + + L +LA+ + +++ +Q S + P
Sbjct: 363 GS-GFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRAR--LQAQFSQMRPPVG 419
Query: 395 PHL 397
P +
Sbjct: 420 PRM 422
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/202 (18%), Positives = 88/202 (43%), Gaps = 32/202 (15%)
Query: 69 EVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIP 128
+ + EE + +D ++ D+++ V + E++ A+ + VY+ +
Sbjct: 174 QFDNEESAKSAIDKLNGMLL--NDKQVFVGPFLRKQERESTADKTRF----NNVYVKNLS 227
Query: 129 HDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG 188
++DDL+ G +T +M+ D G++K + FV F + A++++E LN +
Sbjct: 228 ETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAARSVEALNGKKFDD 286
Query: 189 KKIKCSAAQAKH------------------------RLFIGNVPRNWGEDDMRKAVTKIG 224
K+ AQ K+ L++ N+ + +D +++ ++ G
Sbjct: 287 KEWYVGKAQKKYEREMELKGKFEQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFG 346
Query: 225 PGVISIELVKDPQNANQNRGFA 246
+ S ++++DP ++ GF
Sbjct: 347 -TITSCKVMRDPNGISRGSGFV 367
>gi|293337013|ref|NP_001169661.1| uncharacterized protein LOC100383542 [Zea mays]
gi|224030689|gb|ACN34420.1| unknown [Zea mays]
Length = 442
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 125/267 (46%), Gaps = 17/267 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + L + V VR+ + SG + GY +V F +++ A++A+E
Sbjct: 2 ASLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALE 61
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN L GK I+ + + LF+ N+ N ++ + + G ++S +
Sbjct: 62 ALNFTPLIGKYIRVMFSNRDPSLRKSGRANLFVKNLEPNIDSKNLYEIFSSFG-AILSCK 120
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D +A Q++G+ F++Y AE + ++ L +N R +
Sbjct: 121 VATD--SAGQSKGYGFVQYETEESAEAAINGLNG---MLANNRKMFVGLHMRRRDREV-- 173
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+ +Y+KNLP + ++D L++ FA G+IT V+ G + +GFV+F + A++A
Sbjct: 174 KFTNVYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKC-FGFVNFKKPEFAIEA 232
Query: 352 LKNTEKYEIDGQVLDCSLAKPQADQKT 378
++ I + L A+ + ++K
Sbjct: 233 VEKANGKAIGDKTLYVGRAQKKEERKA 259
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 125/307 (40%), Gaps = 40/307 (13%)
Query: 95 MKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG 154
++V S++D +K + +++ + + +L S G + ++
Sbjct: 73 IRVMFSNRDPSLRKSGR--------ANLFVKNLEPNIDSKNLYEIFSSFGAILSCKVAT- 123
Query: 155 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH-------RLFIGNV 207
+G++KGY FV + T+E A AI LN +K+ + ++I N+
Sbjct: 124 DSAGQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDREVKFTNVYIKNL 183
Query: 208 PRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK 267
P + EDD+R+ G + S +++D A++ GF N E++ + +
Sbjct: 184 PTEFSEDDLRQEFAPFGE-ITSAVVMRDADGASKCFGFV-----NFKKPEFAIEAVEKAN 237
Query: 268 FK-LDDNAPTVSWADPRNAESSAASQVKA---------------LYVKNLPKDITQDRLK 311
K + D V A + E A + + LY+KN+ I + LK
Sbjct: 238 GKAIGDKTLYVGRAQ-KKEERKAELKTRFGRGRDNKVDKPNGINLYLKNIDDGINDEGLK 296
Query: 312 ELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
+LF G++ + G+ + GFV FA + +A+ + + L LA+
Sbjct: 297 KLFEEFGQVASCKVMVDARGRSKGS-GFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQ 355
Query: 372 PQADQKT 378
P+ ++K
Sbjct: 356 PKEERKA 362
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 91 GDEEMKVAESDKDDEKKKHAELLAL----------PPHGSEVYLGGIPHDASDDDLRHFC 140
GD+ + V + K +E+K AEL P+G +YL I +D+ L+
Sbjct: 242 GDKTLYVGRAQKKEERK--AELKTRFGRGRDNKVDKPNGINLYLKNIDDGINDEGLKKLF 299
Query: 141 KSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
+ G+V ++M G +KG FV+F T E +AI +N + K + AQ K
Sbjct: 300 EEFGQVASCKVMV-DARGRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQPK 357
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 122/253 (48%), Gaps = 20/253 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + +D L +G+V VR+ + S + GY +V F + A++A++
Sbjct: 28 TSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALD 87
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN L + I+ + + +FI N+ R + + G ++S +
Sbjct: 88 VLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFG-NILSCK 146
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D ++ Q++G+ F+++ N A+ + +K++ L+D V + S A
Sbjct: 147 VATD--SSGQSKGYGFVQFDNEESAQKAIEKLNG--MLLNDKQVYVGPFLRKQERESTAD 202
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSA 348
+ K ++VKNL + T D LK +F G IT V+ + G +S+ +GFV+F A
Sbjct: 203 KAKFNNVFVKNLSESTTDDELKNVFGEFGTITSAVV--MRDGDGKSKCFGFVNFENADDA 260
Query: 349 MKALK--NTEKYE 359
+A++ N +K++
Sbjct: 261 ARAVEALNGKKFD 273
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 134/300 (44%), Gaps = 40/300 (13%)
Query: 126 GIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE 185
I H A D F G + ++ SG++KGY FV F +E A +AIE+LN
Sbjct: 126 AIDHKALHDTFSTF----GNILSCKVAT-DSSGQSKGYGFVQFDNEESAQKAIEKLNGML 180
Query: 186 LKGKKI-----------KCSAAQAK-HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
L K++ + +A +AK + +F+ N+ + +D+++ + G + S ++
Sbjct: 181 LNDKQVYVGPFLRKQERESTADKAKFNNVFVKNLSESTTDDELKNVFGEFG-TITSAVVM 239
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
+D +++ F F+ + N A + + ++ KF DD V A ++
Sbjct: 240 RD--GDGKSKCFGFVNFENADDAARAVEALNGKKF--DDKEWYVGKAQKKSERENELKQR 295
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
E++ Q LYVKNL + D+LKELF+ G IT + G R GF
Sbjct: 296 FEQSMKEAADKYQGANLYVKNLDDSLGDDKLKELFSPFGTITSCKVMRDPNGISRGS-GF 354
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT-YPPHLG 398
V F+ A +AL + + L +LA+ + D++ +Q + + P PP +G
Sbjct: 355 VAFSTPDEASRALLEMNGKMVVSKPLYVTLAQRKEDRRAR--LQAQFAQMRPVGMPPSVG 412
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 117/257 (45%), Gaps = 18/257 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + +Y+G + SD L G+V VR+ + S + GYA+V F A+
Sbjct: 42 PLPTTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAA 101
Query: 176 QAIEELNSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+E LN L K I+ S +FI N+ + + + + G +
Sbjct: 102 RALEVLNFAVLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFG-TI 160
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE- 286
+S ++ D A Q++GF F++Y A+ + + ++ L ++ P R E
Sbjct: 161 LSCKVAMD--EAGQSKGFGFVQYEKEEAAQNAIKSLNG---MLINDKPVFVGPFLRKQER 215
Query: 287 --SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
S ++ ++VKNL + T++ L ++F +G IT V+ G+ R +GF++F
Sbjct: 216 DHSFDKTKFNNVFVKNLSESTTKEDLLKVFGEYGSITSAVVMIGMDGKSRC-FGFINFEN 274
Query: 345 RSSAMKALKNTEKYEID 361
+A +A++ +I+
Sbjct: 275 PDAASRAVQELNGKKIN 291
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 100/421 (23%), Positives = 172/421 (40%), Gaps = 74/421 (17%)
Query: 92 DEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
++ ++V S++D ++ + +++ + + L S G + ++
Sbjct: 114 NKPIRVMYSNRDPSSRRSGS--------ANIFIKNLDKTIDNKTLHETFSSFGTILSCKV 165
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------ 199
++G++KG+ FV + +E A AI+ LN + K + K
Sbjct: 166 AM-DEAGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERDHSFDKTKF 224
Query: 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 259
+ +F+ N+ + ++D+ K + G ++ ++ ++R F FI + N A +
Sbjct: 225 NNVFVKNLSESTTKEDLLKVFGEYGSITSAVVMIG---MDGKSRCFGFINFENPDAASRA 281
Query: 260 RQKMSNPKFKLDDNAPTVSWADP---------RNAESS---AASQVKAL--YVKNLPKDI 305
Q+++ K ++D V A R E S AA + + L Y+KNL I
Sbjct: 282 VQELNGKK--INDKEWYVGRAQKKSEREMELKRRFEQSLKDAADKYQGLNLYLKNLDDSI 339
Query: 306 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
D+L+ELF++ GKIT + + G + GFV F+ R A +AL I G+ L
Sbjct: 340 GDDQLRELFSNFGKITSYKVMRDQNGLSKGS-GFVAFSTREEASQALTEMNGKMISGKPL 398
Query: 366 DCSLAKPQADQKTSGGSNSQKSALN-------------PTYPP----HLGYGMVGGAYGA 408
+ A+ + D+K +Q S + P YPP L YG A
Sbjct: 399 YVAFAQRKEDRKAM--LQAQFSQMRPAVPMTPTLAPRLPMYPPMAPQQLFYGQAPPAMIP 456
Query: 409 LGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRG 468
G+ GF Q +V G PGG M +P V+QQ Q P P R G G
Sbjct: 457 PQPGF---GFQQQLV--PGMRPGGPHMPNYFVP------VVQQ---GQQGPRPGMRRGAG 502
Query: 469 G 469
Sbjct: 503 A 503
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 122/255 (47%), Gaps = 24/255 (9%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + S+ L +G+V +R+ + + + GYA+V + + A++A+E
Sbjct: 24 TSLYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATRALE 83
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
LN + GK I+ + HR +FI N+ ++ + G ++
Sbjct: 84 LLNFNAVNGKPIRIMFS---HRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFG-TIL 139
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA--E 286
S ++ DP + Q++G+ F+++ A+ + +K++ L+D V R +
Sbjct: 140 SCKVATDP--SGQSKGYGFVQFEQEESAQTAIEKVNG--MLLNDKQVFVGPFVRRQERDQ 195
Query: 287 SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346
S S+ +YVKNL T D LK++F +G I+ V+ G+ + +GFV+F
Sbjct: 196 SGVVSKFNNVYVKNLADSTTDDELKKVFEAYGPISSAVVMRDNEGKSKC-FGFVNFEHAD 254
Query: 347 SAMKALK--NTEKYE 359
A KA++ N +K++
Sbjct: 255 DAAKAVEALNGKKFD 269
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 146/341 (42%), Gaps = 45/341 (13%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +++ + + L + G + ++ SG++KGY FV F +E A AIE
Sbjct: 112 ANIFIKNLDKSIDNKALHDTFAAFGTILSCKVAT-DPSGQSKGYGFVQFEQEESAQTAIE 170
Query: 180 ELNSCELKGKKI------------KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
++N L K++ + + +++ N+ + +D+++K GP +
Sbjct: 171 KVNGMLLNDKQVFVGPFVRRQERDQSGVVSKFNNVYVKNLADSTTDDELKKVFEAYGP-I 229
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP---RN 284
S +++D N +++ F F+ + + A + + ++ KF D+ V A R
Sbjct: 230 SSAVVMRD--NEGKSKCFGFVNFEHADDAAKAVEALNGKKF--DEKEWYVGRAQKKSERE 285
Query: 285 AESSAAS-----------QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
AE A Q LY+KNL I ++L+E+F+ +G I + GQ
Sbjct: 286 AELRAKFEQERKERIEKYQGVNLYLKNLDDTIDDEKLREIFSEYGTIVSCKVMRDPQGQS 345
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS-GGSNSQKSALNPT 392
R GFV F+ A +A+ + + L +LA+ + +++ + +Q++ + P
Sbjct: 346 RGS-GFVAFSSPDEATRAVTEMNGKMVGSKPLYVALAQRKEERRNRLQAAFAQRTPVGPA 404
Query: 393 YPPHL------GYGMVGGA--YGALGAGYVPAGFAQPMVYG 425
P L G GM G YG G +P QP +G
Sbjct: 405 VPTSLPMYHPAGPGMGPGMSYYGQHPPGPIP---LQPAAFG 442
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 116/244 (47%), Gaps = 18/244 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + +D L +G+V VR+ + S + GY +V F + A++A++
Sbjct: 31 TSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALD 90
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN L + I+ + + +FI N+ R + + G ++S +
Sbjct: 91 VLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFG-NILSCK 149
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D ++ Q++G+ F+++ N A+ + +K++ L+D V + SAA
Sbjct: 150 VATD--SSGQSKGYGFVQFDNEESAQKAIEKLNG--MLLNDKQVYVGPFLRKQERESAAD 205
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSA 348
+ K ++VKNL + T D LK F G IT V+ + G +S+ +GFV+F A
Sbjct: 206 KAKFNNVFVKNLSESTTDDELKNTFGEFGTITSAVV--MRDGDGKSKCFGFVNFENADDA 263
Query: 349 MKAL 352
+A+
Sbjct: 264 ARAV 267
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 133/300 (44%), Gaps = 40/300 (13%)
Query: 126 GIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE 185
I H A D F G + ++ SG++KGY FV F +E A +AIE+LN
Sbjct: 129 AIDHKALHDTFSTF----GNILSCKVAT-DSSGQSKGYGFVQFDNEESAQKAIEKLNGML 183
Query: 186 LKGKKI-----------KCSAAQAK-HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
L K++ + +A +AK + +F+ N+ + +D+++ + G + S ++
Sbjct: 184 LNDKQVYVGPFLRKQERESAADKAKFNNVFVKNLSESTTDDELKNTFGEFG-TITSAVVM 242
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
+D +++ F F+ + N A + + ++ F DD V A ++
Sbjct: 243 RD--GDGKSKCFGFVNFENADDAARAVEALNGKNF--DDKEWYVGKAQKKSERENELKQR 298
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
E++ Q LYVKNL I ++LKELF+ G IT + G R GF
Sbjct: 299 FEQSMKEAADKYQGANLYVKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGLSRGS-GF 357
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT-YPPHLG 398
V F+ A +AL + + L +LA+ + D++ +Q + + P PP +G
Sbjct: 358 VAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRAR--LQAQFAQMRPVGMPPSVG 415
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 119/267 (44%), Gaps = 18/267 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 51 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KGK + +Q + +FI N+ + G ++
Sbjct: 111 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 169
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L+D V + S
Sbjct: 170 SCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDKKVFVGHHISKKDRQS 225
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +Y+KNL +I D +++F G+IT + + G+ R +GFV+F+
Sbjct: 226 KFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRG-FGFVNFST 284
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAK 371
SA A++ EI Q L A+
Sbjct: 285 HESAQAAVEEMNDKEIRSQKLYVGRAQ 311
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 101/232 (43%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 144 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 202
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ +K ++I N+ +D+ RK K G +
Sbjct: 203 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGE-I 261
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D + ++RGF F+ + H A+ + ++M++ + + V A ++
Sbjct: 262 TSATLSRDQEG--KSRGFGFVNFSTHESAQAAVEEMNDKEIR--SQKLYVGRAQKKHERE 317
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL DI ++L+ELF +G IT +
Sbjct: 318 EELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKV 369
>gi|291231285|ref|XP_002735593.1| PREDICTED: TIA-1 related protein-like [Saccoglossus kowalevskii]
Length = 409
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 41/288 (14%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
ALP +Y+G + ++ + IG +++ + G Y FV F
Sbjct: 11 ALP---RTLYVGNLDRQVTEAFILQLFGQIGPCKSCKMIA--EHGGNDPYCFVEFVEHSH 65
Query: 174 ASQAIEELNSCELKGKKIKCSAAQA----------KHRLFIGNVPRNWGEDDMRKAVTKI 223
A+ A++ +N + GK++K + A H +F+G++ D++ A
Sbjct: 66 AAAALQTMNGRMILGKEVKVNWATTPSSMKKDTSNHHHVFVGDLSSEVDTPDLKAAFAPF 125
Query: 224 GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWAD-- 281
G + +VKD Q N+++G+ F+ + N AE + Q M+ L A +WA
Sbjct: 126 GQ-ISDARVVKDLQ-TNKSKGYGFVSFLNKVDAENAIQGMNGQW--LSGRAIRTNWATRK 181
Query: 282 ---PRNAES-----------SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPP 327
PR E+ S++ +Y+ + +T+ +++E F+H+G I +V I P
Sbjct: 182 PPPPRQPETTKQLSYDDVCNSSSYTNTTVYIGGVTTGLTEGKMRETFSHYGHIQEVRIFP 241
Query: 328 AKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375
K Y F+ F SA A+ + +I+G ++ CS K +D
Sbjct: 242 DK------GYAFIRFMTHESAAHAIVSVNGSQINGHMVKCSWGKESSD 283
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KG+ ++ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N +RG+ F+ + H AE + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSRGYGFVHFETHDAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +D+ ++LKE+F+ G T V + + G R +GFV F
Sbjct: 185 ARAREFTNVYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDESGGGRG-FGFVSFENHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+ E++G+++ A+ + +++
Sbjct: 244 AQKAVDEMNGKELNGRIMFVGRAQKKMERQ 273
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 115/276 (41%), Gaps = 33/276 (11%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + +++ D ++GY FV F T + A +AIE++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSRGYGFVHFETHDAAERAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + A+ R F +N+GED +++ +K G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKEIFSKFG-NA 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
S+ ++ D + RGF F+ + NH A+ + +M+ + K++
Sbjct: 218 TSVRVMTD--ESGGGRGFGFVSFENHEDAQKAVDEMNGKELNGRIMFVGRAQKKMERQME 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ + + Q LYVKNL I +RL++ F+ G IT + G
Sbjct: 276 LKRRFEQMKQDRTTRYQGVNLYVKNLDDGIDDERLRKEFSPFGSITSAKV--MMEGGRSK 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
+GFV F+ A KA+ + + L +LA+
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ D D+ L+ G T VR+M +SG +G+ F
Sbjct: 177 KEREAELGARAREFTNVYIKNFGEDMDDEKLKEIFSKFGNATSVRVMT-DESGGGRGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH------------------------R 201
V+F E A +A++E+N EL G+ + AQ K
Sbjct: 236 VSFENHEDAQKAVDEMNGKELNGRIMFVGRAQKKMERQMELKRRFEQMKQDRTTRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L++ N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFG----SITSAKVMMEGGRSKGFGFVCF 340
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 85 AQKHYDGDEEMKV-AESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
AQK + E+K E K D ++ G +Y+ + D+ LR
Sbjct: 266 AQKKMERQMELKRRFEQMKQDRTTRY--------QGVNLYVKNLDDGIDDERLRKEFSPF 317
Query: 144 GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
G +T ++M + G +KG+ FV F + E A++A+ E+N + K + + AQ K
Sbjct: 318 GSITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 115/252 (45%), Gaps = 37/252 (14%)
Query: 157 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------------HRL 202
+GE+KGY FV F T+E A +AIE+L+ + KK+ +++ +
Sbjct: 135 AGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVREYGDRAKQFTNV 194
Query: 203 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 262
FI N+P W + + + + G V+S+ L D ++R F F+ + H CAE +K
Sbjct: 195 FIKNLPAEWDDAKLTEVFGEHG-SVMSVALATDENG--KSRQFGFVSFETHECAEKVVEK 251
Query: 263 MSNPKFKLDDNAPTVSWADPRNAESSAASQVKA---------------LYVKNLPKDITQ 307
+ + +F + V A + AE A +VK LYVKNL IT
Sbjct: 252 LHDKEF--EGKKIFVGRAQ-KKAERQAELKVKFEKLKHERNQRYQGVNLYVKNLDDSITD 308
Query: 308 DRLKELFAHHGKIT--KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
D L+E FA +G IT KV+ G +GFV F A KA+ I + L
Sbjct: 309 DILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIASKPL 368
Query: 366 DCSLAKPQADQK 377
+LA+ + ++K
Sbjct: 369 YVALAQRKDERK 380
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 123/270 (45%), Gaps = 18/270 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + +A++ L G V +R+ + + + GYA+V F+ E A +AI+
Sbjct: 11 ASLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAID 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N ELKGK I+ +Q L FI N+ + + + G ++S +
Sbjct: 71 TMNFDELKGKAIRIMWSQRDPALRKSGVGNIFIKNLDKTIDNKMLYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE----S 287
+ + A +++G+ F+ + A + +K+ ++D V R
Sbjct: 130 V--NVNLAGESKGYGFVHFETEEAAVKAIEKLDG--MLMNDKKVFVGRFKSRGERVREYG 185
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A Q +++KNLP + +L E+F HG + V + + G+ R ++GFV F
Sbjct: 186 DRAKQFTNVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSR-QFGFVSFETHEC 244
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A K ++ E +G+ + A+ +A+++
Sbjct: 245 AEKVVEKLHDKEFEGKKIFVGRAQKKAERQ 274
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 119/267 (44%), Gaps = 18/267 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 108
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KGK + +Q + +FI N+ + G ++
Sbjct: 109 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 167
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L+D V + S
Sbjct: 168 SCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDKKVFVGHHISKKDRQS 223
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +Y+KNL +I D +++F G+IT + + G+ R +GFV+F+
Sbjct: 224 KFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRG-FGFVNFST 282
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAK 371
SA A++ EI Q L A+
Sbjct: 283 HESAQAAVEEMNDKEIRSQKLYVGRAQ 309
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 101/232 (43%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 142 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ +K ++I N+ +D+ RK K G +
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGE-I 259
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D + ++RGF F+ + H A+ + ++M++ + + V A ++
Sbjct: 260 TSATLSRDQEG--KSRGFGFVNFSTHESAQAAVEEMNDKEIR--SQKLYVGRAQKKHERE 315
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL DI ++L+ELF +G IT +
Sbjct: 316 EELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKV 367
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 9/122 (7%)
Query: 84 DAQKHYDG----DEEMKVAES-DKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRH 138
+A KH +G D+++ V K D + K E+ A + + VY+ + + DD+ R
Sbjct: 195 NAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA---NFTNVYIKNLDSEIDDDEFRK 251
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
+ GE+T + + ++ G+++G+ FV F T E A A+EE+N E++ +K+ AQ
Sbjct: 252 MFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQK 310
Query: 199 KH 200
KH
Sbjct: 311 KH 312
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 117/243 (48%), Gaps = 16/243 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + S+ L +G+V +R+ + + + GYA+V + + + A++A+E
Sbjct: 28 TSLYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATRALE 87
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN L G I+ + +FI N+ + + + G G++S +
Sbjct: 88 LLNFSVLNGNPIRIMFSHRDPSIRKSGTANIFIKNLDKTIDNKALHDTFSAFG-GILSCK 146
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA--ESSA 289
+ D + Q++G+ F+++ A + +K++ L+D V R +S
Sbjct: 147 VAVD--GSGQSKGYGFVQFEQEESALTAIEKVNG--MLLNDKQVFVGPFVRRQERDQSGG 202
Query: 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
S+ +YVKNL ++ T+D LK +F +G I+ V+ G+ + +GFV+F +A
Sbjct: 203 VSKFNNVYVKNLGENTTEDDLKNVFGAYGTISSAVVMRDSDGKSKC-FGFVNFEHPDNAA 261
Query: 350 KAL 352
KA+
Sbjct: 262 KAV 264
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 116/269 (43%), Gaps = 34/269 (12%)
Query: 157 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI------------KCSAAQAKHRLFI 204
SG++KGY FV F +E A AIE++N L K++ + + +++
Sbjct: 152 SGQSKGYGFVQFEQEESALTAIEKVNGMLLNDKQVFVGPFVRRQERDQSGGVSKFNNVYV 211
Query: 205 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 264
N+ N EDD++ G + S +++D ++ GF E+ ++A +
Sbjct: 212 KNLGENTTEDDLKNVFGAYG-TISSAVVMRDSDGKSKCFGFVNFEHPDNAAKAV---EAL 267
Query: 265 NPKFKLDDNAPTVSWADP---RNAESSAAS-----------QVKALYVKNLPKDITQDRL 310
N K K D+ V A R AE A Q LY+KNL + ++L
Sbjct: 268 NGK-KRDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTVDDEKL 326
Query: 311 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370
+ELFA +G IT + GQ R GFV F+ A +A+ + + L +LA
Sbjct: 327 RELFADYGTITSCKVMRDPQGQSRGS-GFVAFSSPEEATRAVTEMNGKMVGSKPLYVALA 385
Query: 371 KPQADQKT--SGGSNSQKSALNPTYPPHL 397
+ + +++ +++++P P L
Sbjct: 386 QRKEERRARLQAAFAQMRTSVSPAVPTSL 414
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 126/270 (46%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N LKG+ I+ +Q +FI N+ + + + G ++S +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D + RGF F+ + H A+ + M+ L+D V R AE
Sbjct: 130 VVCDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDRKVFVGHFKSRREREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +YVKNLP D+ + L++LF+ GK+ V + G R +GFV+F +
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+ + E+ G++L A+ + +++
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQ 273
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 121/282 (42%), Gaps = 33/282 (11%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + +++ D ++G+ FV F T E A QAI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVC--DEHGSRGFGFVHFETHEAAQQAINTM 158
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L +K+ +++ +++ N+P + E ++ ++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGK-M 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSWADPRNA 285
+S+++++D N+ +R F F+ + H A+ + M+ + +L + +N
Sbjct: 218 LSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 286 ESSAASQVKA----------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
Q+K LYVKNL I D+L++ F+ +G IT + G
Sbjct: 276 LKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV--MTEGGHSK 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERK 375
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 29/179 (16%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV +++ AEL A + +Y+ +P D + L+ G++ V++M+
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR-D 225
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHR------ 201
+SG ++ + FV F E A +A+ +N E+ G+ + AQ K R
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQ 285
Query: 202 ----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L++ N+ + +D +RK + G I K ++GF F+ +
Sbjct: 286 DRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYG----VITSAKVMTEGGHSKGFGFVCF 340
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 17/168 (10%)
Query: 33 VDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGIDAQKHYDGD 92
V + DN V +E+ EE ++ V + +E + ++ AQK +
Sbjct: 220 VKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH------MNGKEVSGRLLYAGRAQKRVERQ 273
Query: 93 EEMKV-AESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
E+K E K D +++ G +Y+ + DD LR G +T ++
Sbjct: 274 NELKRRFEQMKQDRLRRY--------QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV 325
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
M + G +KG+ FV F + E A++A+ E+N + K + + AQ K
Sbjct: 326 MT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 120/261 (45%), Gaps = 18/261 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 42 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 101
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KGK + +Q + +FI N+ + G ++
Sbjct: 102 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFG-NIL 160
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D + AN ++G+ F+ Y A + + ++ L+D V + S
Sbjct: 161 SCKVAQD-EFAN-SKGYGFVHYETAEAANNAIKHVNG--MLLNDKKVFVGHHISKKDRQS 216
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +Y+KN+ +IT D + +F G+IT + + G+ R +GFV++A
Sbjct: 217 KFEEMKANFTNIYIKNIDLEITDDEFRTMFEAFGEITSATLSHDQDGKSRG-FGFVNYAN 275
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
SA A+ + E+ Q L
Sbjct: 276 HESAEAAVAEMNEKEVKSQKL 296
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 96/232 (41%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + + L + G + ++ + + +KGY FV + T E A+ AI+ +
Sbjct: 135 VFIKNLDNAIDNKALHDTFAAFGNILSCKVAQ-DEFANSKGYGFVHYETAEAANNAIKHV 193
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ +K ++I N+ +D+ R G +
Sbjct: 194 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDLEITDDEFRTMFEAFGE-I 252
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L D ++RGF F+ Y NH AE + +M+ + K V A ++
Sbjct: 253 TSATLSHD--QDGKSRGFGFVNYANHESAEAAVAEMNEKEVK--SQKLYVGRAQKKHERE 308
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL DI ++L++LF +G IT +
Sbjct: 309 EELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEKLRDLFTPYGTITSAKV 360
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 144 GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
GE TE + + K G++KG+ FV F + + AS+A+ E+N + GK + + AQ K
Sbjct: 410 GEATEEKKTEKKAFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 465
>gi|148223119|ref|NP_001088471.1| uncharacterized protein LOC495336 [Xenopus laevis]
gi|54311231|gb|AAH84798.1| LOC495336 protein [Xenopus laevis]
Length = 711
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 123/262 (46%), Gaps = 16/262 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D +DD LR IG V + + S ++ GY +V F + A +A+E
Sbjct: 2 TSLYVGDLHPDINDDQLRMKFSEIGPVAVAHVCRDVTSRKSLGYGYVNFEDPKDAERALE 61
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
++N + G+ I+ +Q L FI N+ + + ++ + G ++S +
Sbjct: 62 QMNYEVVMGRPIRIMWSQRDPSLRKSGLGNIFIKNLAKTIEQKELYDTFSLFG-RILSCK 120
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D +N N ++G+ F+ + N CA+ + QK++N + V PR+ S
Sbjct: 121 IAMD-ENGN-SKGYGFVHFENEECAKRAIQKVNN--MSICGKVVYVGNFIPRSDRKSQNR 176
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
+ K +YVKN P + ++LKE+F G+I + G+ + +GFV + A
Sbjct: 177 KQKFNNIYVKNFPPETDDEKLKEMFTEFGEIKSACVMKDSEGKSKG-FGFVCYLNPEHAE 235
Query: 350 KALKNTEKYEIDGQVLDCSLAK 371
A+ EI G+ L S A+
Sbjct: 236 AAVAAMHGKEIGGRSLYASRAQ 257
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 137/310 (44%), Gaps = 46/310 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + +L G + +I ++G +KGY FV F +E A +AI+++
Sbjct: 92 IFIKNLAKTIEQKELYDTFSLFGRILSCKIAM-DENGNSKGYGFVHFENEECAKRAIQKV 150
Query: 182 NSCELKGKKIKC------------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
N+ + GK + + Q + +++ N P ++ +++ T+ G + S
Sbjct: 151 NNMSICGKVVYVGNFIPRSDRKSQNRKQKFNNIYVKNFPPETDDEKLKEMFTEFGE-IKS 209
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM------------SNPKFKLDDNAPTV 277
++KD + +++GF F+ Y N AE + M S + K +
Sbjct: 210 ACVMKDSEG--KSKGFGFVCYLNPEHAEAAVAAMHGKEIGGRSLYASRAQRKEERQEELK 267
Query: 278 SWADPRNAE--SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ + AE S S V LYVKNL +I +RLKE+F+ +G I+ + RS
Sbjct: 268 LRLEKQKAERRSKYVSNVN-LYVKNLDDEIDDERLKEIFSKYGPISSAKV--MTDSNNRS 324
Query: 336 R-YGFVHFAERSSAMKALKNTEKYEIDGQV-----LDCSLAKPQADQKT--SGGSNSQKS 387
+ +GFV F A KA+ E +G+V L ++A+ + D++ + +
Sbjct: 325 KGFGFVCFTNPEQATKAVT-----EANGRVEYSKPLYVAIAQRKEDRRAELAAKHTQHLN 379
Query: 388 ALNPTYPPHL 397
AL T PP +
Sbjct: 380 ALRSTAPPMI 389
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 95/197 (48%), Gaps = 13/197 (6%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++G++ + +D +R ++IGP +++ V + ++ G+ ++ + + AE + +
Sbjct: 4 LYVGDLHPDINDDQLRMKFSEIGP--VAVAHVCRDVTSRKSLGYGYVNFEDPKDAERALE 61
Query: 262 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 318
+M+ +++ P + W+ DP S S + +++KNL K I Q L + F+ G
Sbjct: 62 QMN---YEVVMGRPIRIMWSQRDP----SLRKSGLGNIFIKNLAKTIEQKELYDTFSLFG 114
Query: 319 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
+I I + G + YGFVHF A +A++ I G+V+ P++D+K+
Sbjct: 115 RILSCKIAMDENGNSKG-YGFVHFENEECAKRAIQKVNNMSICGKVVYVGNFIPRSDRKS 173
Query: 379 SGGSNSQKSALNPTYPP 395
+ +PP
Sbjct: 174 QNRKQKFNNIYVKNFPP 190
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 126/270 (46%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N LKG+ I+ +Q +FI N+ + + + G ++S +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D + RGF F+ + H A+ + M+ L+D V R AE
Sbjct: 130 VVCDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDRKVFVGHFKSRREREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +YVKNLP D+ + L++LF+ GK+ V + G R +GFV+F +
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+ + E+ G++L A+ + +++
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQ 273
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 121/282 (42%), Gaps = 33/282 (11%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + +++ D ++G+ FV F T E A QAI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVC--DEHGSRGFGFVHFETHEAAQQAINTM 158
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L +K+ +++ +++ N+P + E ++ ++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGK-M 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSWADPRNA 285
+S+++++D N+ +R F F+ + H A+ + M+ + +L + +N
Sbjct: 218 LSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 286 ESSAASQVKA----------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
Q+K LYVKNL I D+L++ F+ +G IT + G
Sbjct: 276 LKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV--MTEGGHSK 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERK 375
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 29/179 (16%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV +++ AEL A + +Y+ +P D + L+ G++ V++M+
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR-D 225
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHR------ 201
+SG ++ + FV F E A +A+ +N E+ G+ + AQ K R
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQ 285
Query: 202 ----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L++ N+ + +D +RK + G I K ++GF F+ +
Sbjct: 286 DRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYG----VITSAKVMTEGGHSKGFGFVCF 340
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 17/168 (10%)
Query: 33 VDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGIDAQKHYDGD 92
V + DN V +E+ EE ++ V + +E + ++ AQK +
Sbjct: 220 VKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH------MNGKEVSGRLLYAGRAQKRVERQ 273
Query: 93 EEMKV-AESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
E+K E K D +++ G +Y+ + DD LR G +T ++
Sbjct: 274 NELKRRFEQMKQDRLRRY--------QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV 325
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
M + G +KG+ FV F + E A++A+ E+N + K + + AQ K
Sbjct: 326 MT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 126/270 (46%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N LKG+ I+ +Q +FI N+ + + + G ++S +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D + RGF F+ + H A+ + M+ L+D V R AE
Sbjct: 130 VVCDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDRKVFVGHFKSRREREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +YVKNLP D+ + L++LF+ GK+ V + G R +GFV+F +
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+ + E+ G++L A+ + +++
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQ 273
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 121/282 (42%), Gaps = 33/282 (11%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + +++ D ++G+ FV F T E A QAI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVC--DEHGSRGFGFVHFETHEAAQQAINTM 158
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L +K+ +++ +++ N+P + E ++ ++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGK-M 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSWADPRNA 285
+S+++++D N+ +R F F+ + H A+ + M+ + +L + +N
Sbjct: 218 LSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 286 ESSAASQVKA----------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
Q+K LYVKNL I D+L++ F+ +G IT + G
Sbjct: 276 LKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV--MTEGGHSK 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERK 375
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 29/179 (16%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV +++ AEL A + +Y+ +P D + L+ G++ V++M+
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR-D 225
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHR------ 201
+SG ++ + FV F E A +A+ +N E+ G+ + AQ K R
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQ 285
Query: 202 ----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L++ N+ + +D +RK + G I K ++GF F+ +
Sbjct: 286 DRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYG----VITSAKVMTEGGHSKGFGFVCF 340
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 17/168 (10%)
Query: 33 VDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGIDAQKHYDGD 92
V + DN V +E+ EE ++ V + +E + ++ AQK +
Sbjct: 220 VKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH------MNGKEVSGRLLYAGRAQKRVERQ 273
Query: 93 EEMKV-AESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
E+K E K D +++ G +Y+ + DD LR G +T ++
Sbjct: 274 NELKRRFEQMKQDRLRRY--------QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV 325
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
M + G +KG+ FV F + E A++A+ E+N + K + + AQ K
Sbjct: 326 MT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 130/270 (48%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN D+ +RLKELF +GK V + G+ + +GFV F +
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKG-FGFVSFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ +I+G++L A+ +A+++
Sbjct: 244 ANKAVEEMNGKDINGKMLFVGRAQKKAERQ 273
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 130/284 (45%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T++ A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQDAADRAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+G+D +++ K G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS----NPKF--------KLDDNAP 275
+S++++ DP +++GF F+ + H A + ++M+ N K K + A
Sbjct: 218 LSVKVMTDP--TGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMLFVGRAQKKAERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQE 333
+ E + Q LY+KNL I ++L++ F+ G IT KV++ + G+
Sbjct: 276 LKRRFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML---EDGRS 332
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 333 KG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 29/200 (14%)
Query: 75 ETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDD 134
ET+D D + + + KV K++ AEL A + VY+ D D+
Sbjct: 146 ETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDE 205
Query: 135 DLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194
L+ G+ V++M +G++KG+ FV+F E A++A+EE+N ++ GK +
Sbjct: 206 RLKELFGKYGKTLSVKVMT-DPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMLFVG 264
Query: 195 AAQAKH------------------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISI 230
AQ K L+I N+ ++ +RK + G SI
Sbjct: 265 RAQKKAERQAELKRRFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFG----SI 320
Query: 231 ELVKDPQNANQNRGFAFIEY 250
K +++GF F+ +
Sbjct: 321 TSAKVMLEDGRSKGFGFVCF 340
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 121/252 (48%), Gaps = 16/252 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + +D L +G+V VR+ + S + GY +V + + A++A+E
Sbjct: 27 TSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALE 86
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN L GK I+ + +FI N+ + + + G ++S +
Sbjct: 87 VLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFG-NILSCK 145
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D ++ Q++G+ F++Y + A+ + +K++ L+D V ++ A
Sbjct: 146 VAVD--SSGQSKGYGFVQYDSEEAAQKAIEKLNG--MLLNDKQVYVGPFVRKHERDMAVD 201
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
+ + ++VKNL + ++ L+++F G IT V + + G+ R +GFV+F A
Sbjct: 202 KTRFTNVFVKNLSESTLEEELRKIFGEFGAITSVAVMKDEDGKSRC-FGFVNFENAEDAA 260
Query: 350 KALKNTEKYEID 361
+A++ Y++D
Sbjct: 261 RAVEALNGYKLD 272
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 149/358 (41%), Gaps = 59/358 (16%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
I H A D F G + ++ SG++KGY FV + ++E A +AIE+LN L
Sbjct: 126 IDHKALHDTFSAF----GNILSCKVAV-DSSGQSKGYGFVQYDSEEAAQKAIEKLNGMLL 180
Query: 187 KGKKIKCSAAQAKH------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
K++ KH +F+ N+ + E+++RK + G + S+ ++K
Sbjct: 181 NDKQVYVGPFVRKHERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFG-AITSVAVMK 239
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---------- 284
D ++R F F+ + N A + + ++ +KLD+ V A ++
Sbjct: 240 DEDG--KSRCFGFVNFENAEDAARAVEALNG--YKLDNKDWFVGRAQKKSEREMELKHRF 295
Query: 285 ----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFV 340
E+ SQ LY+KNL I+ ++LKELF+ +G IT + G + GFV
Sbjct: 296 EQSAKEAVDKSQGLNLYIKNLDDSISDEKLKELFSPYGTITSCKVMRDPSGVSKGS-GFV 354
Query: 341 HFAERSSAMKALKNTEKYEIDGQVLDCSLA----------KPQADQKTSGGSNSQKSALN 390
F+ A +AL + + L +LA + Q Q S +
Sbjct: 355 AFSNPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPIAMASSVAPRM 414
Query: 391 PTYPP-------HLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLP 441
P YPP + YG A AG+ G+ Q +V G PGG M +P
Sbjct: 415 PMYPPGGPGLGQQIFYGQPQPAMLPPQAGF---GYQQQLV--PGMRPGGGPMPNFFMP 467
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 124/270 (45%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KG+ I+ +Q +FI N+ + + + G ++S +
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE----S 287
+V D + RGF F+ + H A+ + M+ L+D V R
Sbjct: 130 VVCDEHGS---RGFGFVHFETHEAAQNAISTMNG--MLLNDRKVFVGHFKSRREREVELG 184
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+ A + +YVKNL D+ + RL++LF+ GK+ V + G R +GFV+F +
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRG-FGFVNFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+ N E+ G++L A+ + +++
Sbjct: 244 AQKAVVNMNGREVSGRLLYVGRAQKRVERQ 273
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/282 (19%), Positives = 120/282 (42%), Gaps = 33/282 (11%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + +++ D ++G+ FV F T E A AI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVC--DEHGSRGFGFVHFETHEAAQNAISTM 158
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L +K+ +++ +++ N+ + E ++ ++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFG-KM 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSWADPRNA 285
+S+++++D ++ +RGF F+ + H A+ + M+ + +L + +N
Sbjct: 218 LSVKVMRD--DSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNE 275
Query: 286 ESSAASQVKA----------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
Q+K LYVKNL I ++L++ F+ +G IT + G
Sbjct: 276 LKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKV--MTEGGHSK 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERK 375
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 85 AQKHYDGDEEMKV-AESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
AQK + E+K E K D ++ G +Y+ + D+ LR
Sbjct: 266 AQKRVERQNELKRRFEQMKQDRLTRY--------QGVNLYVKNLDDSIDDEKLRKEFSPY 317
Query: 144 GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
G +T ++M + G +KG+ FV F + E A++A+ E+N + K + + AQ K
Sbjct: 318 GVITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 131/268 (48%), Gaps = 19/268 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+G + ++ L SIG V +R+ + + + GYA+V F++ A+ AI+
Sbjct: 32 SSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSSSDAAHAID 91
Query: 180 ELNSCELKGKKIKCSAAQ---AKHR-----LFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN + GK I+ +Q A R +FI N+ + + + G + S +
Sbjct: 92 VLNFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGT-ITSAK 150
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK-FKLDDNAPTVSWADPRNAESSAA 290
+ D +A ++G+ F+++ AE ++ + N +L+D V R A+ S
Sbjct: 151 VAMD--SAGNSKGYGFVQF---ETAEAAQAAIDNVNGMELNDKQVYVG-PFQRRADRSTQ 204
Query: 291 SQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
+ K +YVKNL ++++ ++L+E FA HG +T VI + G+ + +GFV F A
Sbjct: 205 GEAKFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMKDEEGKSKG-FGFVCFESPEGA 263
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQ 376
A++N + Y D + A+ +A++
Sbjct: 264 ASAVENLDGYTEDEKTWVVCRAQKKAER 291
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 123/292 (42%), Gaps = 46/292 (15%)
Query: 143 IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI----------K 192
G +T ++ +G +KGY FV F T E A AI+ +N EL K++ +
Sbjct: 143 FGTITSAKVAM-DSAGNSKGYGFVQFETAEAAQAAIDNVNGMELNDKQVYVGPFQRRADR 201
Query: 193 CSAAQAK-HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYY 251
+ +AK + +++ N+ N ++ +R+ + G V S ++KD + +++GF F+ +
Sbjct: 202 STQGEAKFNNVYVKNLSENLSDEKLREKFAEHG-AVTSCVIMKDEEG--KSKGFGFVCFE 258
Query: 252 NHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKA---------------L 296
+ E + + N +D V + AE A + K L
Sbjct: 259 S---PEGAASAVENLDGYTEDEKTWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANL 315
Query: 297 YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTE 356
Y+KNL + ++L+ELF G IT + G R FV F+ A +A+
Sbjct: 316 YIKNLEEGTDDEKLRELFNEFGTITSCRVMRDASGASRGS-AFVAFSSPDEATRAVTEMN 374
Query: 357 KYEIDGQVLDCSLAK----PQADQKTSG--------GSNSQKSALNPTYPPH 396
+ + L +LA+ P A + +G G + + L PT P +
Sbjct: 375 GKMVGAKPLYVALAQRKEEPHAGRWHAGYGPVHATAGCSGRADVLRPTAPGY 426
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 11/128 (8%)
Query: 72 EEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDA 131
E+E+T V AQK + + E+K + + E+++ E +A G+ +Y+ +
Sbjct: 275 EDEKTWVVCR---AQKKAEREAELK---AKFEAERRERMEKMA----GANLYIKNLEEGT 324
Query: 132 SDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI 191
D+ LR G +T R+M+ SG ++G AFV F + + A++A+ E+N + K +
Sbjct: 325 DDEKLRELFNEFGTITSCRVMRDA-SGASRGSAFVAFSSPDEATRAVTEMNGKMVGAKPL 383
Query: 192 KCSAAQAK 199
+ AQ K
Sbjct: 384 YVALAQRK 391
>gi|322800628|gb|EFZ21595.1| hypothetical protein SINV_12441 [Solenopsis invicta]
Length = 265
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV+ G IP D +D+L + G++ ++R+M SG +GYAF+TF +E A
Sbjct: 156 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMSGSNRGYAFITFTNREAAQ 215
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI 223
QA+ EL++ E+K GK +K + + RLF+GN+P++ G++++ + K+
Sbjct: 216 QAVRELDNHEIKPGKSLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKL 264
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 16/120 (13%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+F G +P++ ED++ K G + + L+ DP + + NRG+AFI + N A+ + +
Sbjct: 162 VFCGKIPKDMYEDELIPLFEKCGK-IWDLRLMMDPMSGS-NRGYAFITFTNREAAQQAVR 219
Query: 262 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 321
++ N + K ++ + + + L+V N+PK ++ + E F GK+T
Sbjct: 220 ELDNHEIK-----------PGKSLKVNISVPNLRLFVGNIPKSKGKEEILEEF---GKLT 265
>gi|431899704|gb|ELK07658.1| Polyadenylate-binding protein 4-like protein [Pteropus alecto]
Length = 370
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 131/268 (48%), Gaps = 15/268 (5%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + ++D L ++G V +RI + + + GYA+V F A +A++
Sbjct: 10 ASLYVGDLHAEVTEDLLFKKFSAVGPVLSIRICRDLVTQRSLGYAYVNFLHLADAQKALD 69
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + + G ++S +
Sbjct: 70 TMNFDMIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLHKSIDNKTLYEHFSAFGK-ILSSK 128
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK--LDDNAPTVSWADPRNAESSA 289
++ D + RG+AF+ + + A+ + + M+ K P + D + +
Sbjct: 129 VMSDDAGS---RGYAFVHFQSQTAADRAIEAMNGALLKGCRLFVGPFKNRKDRQAELQNK 185
Query: 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
A++ +Y+KN D+ +RLKE+F+H GKI V + G+ + +GFV F +A
Sbjct: 186 ANEFTNVYIKNFGDDMDDERLKEIFSHFGKILSVKVMTDSRGRSKG-FGFVSFDSHEAAQ 244
Query: 350 KALKNTEKYEIDGQVLDCSLAKPQADQK 377
+A++ ++ GQ L A+ +A+++
Sbjct: 245 RAVEIMNGKDLSGQPLFVGRAQKKAERQ 272
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 124/273 (45%), Gaps = 44/273 (16%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G++ ++M D ++GYAFV F+++ A +AIE +
Sbjct: 100 VFIKNLHKSIDNKTLYEHFSAFGKILSSKVMS--DDAGSRGYAFVHFQSQTAADRAIEAM 157
Query: 182 NSCELKG----------KKIKCSAAQAKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N LKG +K + + Q K F +N+G+D +++ + G +
Sbjct: 158 NGALLKGCRLFVGPFKNRKDRQAELQNKANEFTNVYIKNFGDDMDDERLKEIFSHFGK-I 216
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S++++ D + +++GF F+ + +H A+ + + M+ P + AE
Sbjct: 217 LSVKVMTDSRG--RSKGFGFVSFDSHEAAQRAVEIMNGKDL---SGQPLFVGRAQKKAER 271
Query: 288 SAASQVK---------------ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 332
A ++ LY+KNL I +RL+ F+ G I++V + + G+
Sbjct: 272 QAELKLMFEQMKQERYRRFRGVKLYIKNLDDSIDDERLRREFSSFGSISRVKVMK-EEGR 330
Query: 333 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
+ +G + F+ A KA+ E++G++L
Sbjct: 331 SKG-FGLICFSSPEEATKAM-----VEMNGRIL 357
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 31/172 (18%)
Query: 104 DEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDS-GEAKG 162
+ K + AEL + VY+ D D+ L+ G++ V++M DS G +KG
Sbjct: 174 NRKDRQAELQNKANEFTNVYIKNFGDDMDDERLKEIFSHFGKILSVKVM--TDSRGRSKG 231
Query: 163 YAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH---------------------- 200
+ FV+F + E A +A+E +N +L G+ + AQ K
Sbjct: 232 FGFVSFDSHEAAQRAVEIMNGKDLSGQPLFVGRAQKKAERQAELKLMFEQMKQERYRRFR 291
Query: 201 --RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
+L+I N+ + ++ +R+ + G SI VK + +++GF I +
Sbjct: 292 GVKLYIKNLDDSIDDERLRREFSSFG----SISRVKVMKEEGRSKGFGLICF 339
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G ++Y+ + D+ LR S G ++ V++MK + G +KG+ + F + E A++A+
Sbjct: 292 GVKLYIKNLDDSIDDERLRREFSSFGSISRVKVMK--EEGRSKGFGLICFSSPEEATKAM 349
Query: 179 EELNSCELKGKKIKCSAAQ 197
E+N L K + + AQ
Sbjct: 350 VEMNGRILGSKSLNIALAQ 368
>gi|147853770|emb|CAN79549.1| hypothetical protein VITISV_022646 [Vitis vinifera]
Length = 798
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 81/144 (56%), Gaps = 14/144 (9%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
HG++ +L + +A D + GE+ EVR+M ++ G++KGY FV F TKE A++A
Sbjct: 134 HGADAFL--VFLEALDPVF----STCGEIIEVRMMTDQN-GKSKGYCFVRFTTKEAANKA 186
Query: 178 IEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV---- 233
I+E + ++GKKI + + LF GN+P++W D+ K V + V S++L
Sbjct: 187 IKEKSGFMVEGKKIGVVPSTDQTTLFFGNLPKDWSPDEFDKMVCQAFQDVTSVDLAMPFG 246
Query: 234 ---KDPQNANQNRGFAFIEYYNHA 254
QNRGFAF+++ +HA
Sbjct: 247 SGDTSLGQKQQNRGFAFVKFSSHA 270
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 246 AFIEYYNHACAEYSRQKMSNPKFKLDDNA-PTVSWADPRNAESSAASQVKALYVKNLPKD 304
+++ A A R S F L D+ P V WA+ + +++ +V NLPKD
Sbjct: 724 TLVDFVGWAAARAHRMG-SKSDFLLGDSWHPVVEWAEEPEIDPEELAKITIAFVGNLPKD 782
Query: 305 ITQDRLKELFAHHGKI 320
+D LK+LF GK+
Sbjct: 783 ANEDYLKKLFGPFGKV 798
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 118/262 (45%), Gaps = 19/262 (7%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 52 PHSASLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KGK + +Q + +FI N+ + G ++
Sbjct: 112 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L++ V + S
Sbjct: 171 SCKVAQD--EFGNSKGYGFVHYETAEAATNAIKHVNG--MLLNEKKVFVGHHIAKKDRQS 226
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIP-PAKPGQERSRYGFVHFA 343
++KA +YVKNL +T + +ELF +G IT I ++ G+ R +GFV+F
Sbjct: 227 KFEEMKANFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRG-FGFVNFV 285
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
+ SA A++ E GQ L
Sbjct: 286 KHESAAAAVEELNDKEFKGQKL 307
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 33/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAATNAIKHV 203
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ AK +++ N+ ++ R+ K G +
Sbjct: 204 NGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTKVTNEEFRELFGKYGD-I 262
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S + D + ++RGF F+ + H A + +++++ +FK V A ++
Sbjct: 263 TSASITHDSETG-KSRGFGFVNFVKHESAAAAVEELNDKEFK--GQKLYVGRAQKKHERE 319
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL DI ++L++LF G IT +
Sbjct: 320 EELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFIGFGNITSARV 371
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 84 DAQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCK 141
+A KH +G E KV +K + ++ + + + VY+ + ++++ R
Sbjct: 198 NAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTKVTNEEFRELFG 257
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G++T I ++G+++G+ FV F E A+ A+EELN E KG+K+ AQ KH
Sbjct: 258 KYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQKKH 316
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 119/257 (46%), Gaps = 18/257 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + +Y+G + + +D L G+V VR+ + +S + GYA+V + A+
Sbjct: 118 PLPTTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAA 177
Query: 176 QAIEELNSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+E LN L K I+ S +FI N+ + + + G +
Sbjct: 178 RAMEALNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFG-AI 236
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE- 286
+S ++ D + Q++GF F++Y A+ + + ++ L ++ P R E
Sbjct: 237 LSCKVAMD--DIGQSKGFGFVQYEKEESAQSAMKSLNG---MLINDKPVYVGPFLRKQER 291
Query: 287 --SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
SS ++ ++VKNL + T++ L ++F+ +G IT V+ G+ R +GFV+F
Sbjct: 292 DNSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRC-FGFVNFES 350
Query: 345 RSSAMKALKNTEKYEID 361
A +A++ +I+
Sbjct: 351 PDDAARAVEELNGKKIN 367
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/335 (20%), Positives = 149/335 (44%), Gaps = 44/335 (13%)
Query: 92 DEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
++ ++V S++D ++ + +++ + + L + G + ++
Sbjct: 190 NKPIRVMYSNRDPSSRRSGS--------ANIFIKNLDKTIDNKTLHDTFSAFGAILSCKV 241
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC-----------SAAQAK- 199
D G++KG+ FV + +E A A++ LN + K + S+ +AK
Sbjct: 242 AM-DDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSSDKAKF 300
Query: 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 259
+ +F+ N+ + ++D+ K ++ G ++ ++ ++R F F+ + + A +
Sbjct: 301 NNVFVKNLSESTTKEDLIKVFSEYGTITSAVVMIG---MDGKSRCFGFVNFESPDDAARA 357
Query: 260 RQKMSNPKFKLDDNAPTVSWADPRN--------------AESSAASQVKALYVKNLPKDI 305
++++ K ++D V A ++ +++ Q + LY+KNL I
Sbjct: 358 VEELNGKK--INDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGI 415
Query: 306 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
T D+L+ELF++ GKIT I + G + GFV F+ R A +AL I G+ L
Sbjct: 416 TDDQLRELFSNFGKITSCKIMRDQNGVSKGS-GFVSFSTREEASQALTEMNGKMISGKPL 474
Query: 366 DCSLAKPQADQKT---SGGSNSQKSALNPTYPPHL 397
+ A+ + ++K + S + + P+ P L
Sbjct: 475 YVAFAQRKEERKAMLQAQFSQMRPVPMTPSMTPRL 509
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 120/252 (47%), Gaps = 16/252 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + +D L +G+V VR+ + S + GY +V + + A++A+E
Sbjct: 27 TSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALE 86
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN L GK I+ + +FI N+ + + + G ++S +
Sbjct: 87 VLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFG-NILSCK 145
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D ++ Q++G+ F++Y + A+ + +K++ L+D V + A
Sbjct: 146 VAVD--SSGQSKGYGFVQYDSDEAAQKAIEKLNG--MLLNDKQVYVGPFVRKQERDMAVD 201
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
+ + ++VKNL + ++ L+++F G IT V + + G+ R +GFV+F A
Sbjct: 202 KTRFTNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKDEDGKSRC-FGFVNFENAEDAA 260
Query: 350 KALKNTEKYEID 361
+A++ Y++D
Sbjct: 261 RAVEALNGYKLD 272
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 147/358 (41%), Gaps = 59/358 (16%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
I H A D F G + ++ SG++KGY FV + + E A +AIE+LN L
Sbjct: 126 IDHKALHDTFSAF----GNILSCKVAV-DSSGQSKGYGFVQYDSDEAAQKAIEKLNGMLL 180
Query: 187 KGKKIKCSAAQAKH------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
K++ K +F+ N+ + E+++RK + G + S+ ++K
Sbjct: 181 NDKQVYVGPFVRKQERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGT-ITSVAVMK 239
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---------- 284
D ++R F F+ + N A + + ++ +KLD+ V A ++
Sbjct: 240 D--EDGKSRCFGFVNFENAEDAARAVEALNG--YKLDNKDWFVGRAQKKSEREMELKHRF 295
Query: 285 ----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFV 340
E+ SQ LY+KNL I+ D+LKELF+ +G IT + G + GFV
Sbjct: 296 EQSAQEAVDKSQGLNLYLKNLDDSISDDKLKELFSPYGTITSCKVMRDPSGVSKGS-GFV 354
Query: 341 HFAERSSAMKALKNTEKYEIDGQVLDCSLA----------KPQADQKTSGGSNSQKSALN 390
F+ A +AL + + L +LA + Q Q S +
Sbjct: 355 AFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPIAMASSVAPRM 414
Query: 391 PTYPP-------HLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLP 441
P YPP + YG A AG+ G+ Q +V G PGG M +P
Sbjct: 415 PMYPPGGPGLGQQIFYGQPPPAMLPPQAGF---GYQQQLV--PGMRPGGGPMPNFFMP 467
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 17/194 (8%)
Query: 22 EREKPIESEERVDLDEDNDHEEEVEEEVE--YEEVEEEEEVEVEEEVEEE-----VEEEE 74
ER+ ++ ++ N E +EEE+ + E V V ++ + + E
Sbjct: 195 ERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKDEDGKSRCFGFVNFE 254
Query: 75 ETEDVVDGIDAQKHYDGD-EEMKVAESDKDDEKK---KH-----AELLALPPHGSEVYLG 125
ED ++A Y D ++ V + K E++ KH A+ G +YL
Sbjct: 255 NAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAQEAVDKSQGLNLYLK 314
Query: 126 GIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE 185
+ SDD L+ G +T ++M+ SG +KG FV F T E AS+A+ E+N
Sbjct: 315 NLDDSISDDKLKELFSPYGTITSCKVMR-DPSGVSKGSGFVAFSTPEEASRALSEMNGKM 373
Query: 186 LKGKKIKCSAAQAK 199
+ K + + AQ K
Sbjct: 374 VVSKPLYVALAQRK 387
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 26/151 (17%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ V++ + +++LR G +T V +MK +D G+++ + FV F E A++A+E
Sbjct: 206 TNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKDED-GKSRCFGFVNFENAEDAARAVE 264
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHR----------------LFIGNVPRNWGEDD 215
LN +L K AQ KHR L++ N+ + +D
Sbjct: 265 ALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAQEAVDKSQGLNLYLKNLDDSISDDK 324
Query: 216 MRKAVTKIGPGVISIELVKDPQNANQNRGFA 246
+++ + G + S ++++DP ++ GF
Sbjct: 325 LKELFSPYGT-ITSCKVMRDPSGVSKGSGFV 354
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 117/261 (44%), Gaps = 18/261 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 51 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KGK + +Q + +FI N+ + G ++
Sbjct: 111 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 169
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L+D V + S
Sbjct: 170 SCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDKKVFVGHHISKKDRQS 225
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +Y+KNL +I D +++F G+IT + + G+ R +GFV+F+
Sbjct: 226 KFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRG-FGFVNFST 284
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
SA A++ EI Q L
Sbjct: 285 HESAQAAVEEMNDKEIRSQKL 305
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 101/232 (43%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 144 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 202
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ +K ++I N+ +D+ RK K G +
Sbjct: 203 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGE-I 261
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D + ++RGF F+ + H A+ + ++M++ + + V A ++
Sbjct: 262 TSATLSRDQEG--KSRGFGFVNFSTHESAQAAVEEMNDKEIR--SQKLYVGRAQKKHERE 317
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL DI ++L+ELF +G IT +
Sbjct: 318 EELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKV 369
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 121/255 (47%), Gaps = 24/255 (9%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + +D L +G+V VR+ + + + GY +V + + A++A++
Sbjct: 31 TSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 90
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
LN L K ++ + HR +FI N+ + + + G ++
Sbjct: 91 VLNFTPLNNKPLRIMYS---HRDPSIRKSGMANIFIKNLDKTIDHKALHDTFSSFG-NIL 146
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ D + Q++G+ F+++ + A+ + K++ ++D V + S
Sbjct: 147 SCKVATDA--SGQSKGYGFVQFDSEEAAQNAIDKLNG--MLINDKQVYVGNFLRKQERDS 202
Query: 289 AASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346
A S +K +YVKNL + T + LK +F HG IT V+ G+ + +GFV+F
Sbjct: 203 ALSNIKFNNIYVKNLAESTTDEDLKSIFEEHGAITSAVVMRDADGKSKC-FGFVNFENVD 261
Query: 347 SAMKALK--NTEKYE 359
A KA++ N +K++
Sbjct: 262 DAAKAVEALNGKKFD 276
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 83/350 (23%), Positives = 144/350 (41%), Gaps = 60/350 (17%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
I H A D F G + ++ SG++KGY FV F ++E A AI++LN +
Sbjct: 130 IDHKALHDTFSSF----GNILSCKVATDA-SGQSKGYGFVQFDSEEAAQNAIDKLNGMLI 184
Query: 187 KGKKIKCSAAQAK------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
K++ K + +++ N+ + ++D++ + G + S +++
Sbjct: 185 NDKQVYVGNFLRKQERDSALSNIKFNNIYVKNLAESTTDEDLKSIFEEHG-AITSAVVMR 243
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---------- 284
D +++ F F+ + N A + + ++ KF DD V A ++
Sbjct: 244 DADG--KSKCFGFVNFENVDDAAKAVEALNGKKF--DDKEWYVGKAQKKSERELELKGRF 299
Query: 285 ---AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
ES Q LY+KNL + ++LKELF+ G IT + G R GFV
Sbjct: 300 EQSLESVEKYQAVNLYIKNLDDSVNDEKLKELFSDFGTITSCKVMHDPSGISRGS-GFVA 358
Query: 342 FAERSSAMKALKNTEKYEIDGQVL---DCSLAKPQADQKTSGGSNSQKSALNPT-YPPHL 397
F+ A +AL E++G+++ +A Q ++ +Q S + P P +
Sbjct: 359 FSTPEEASRALA-----ELNGKMVVSKPLYVAPAQRKEERRARLQAQFSQMRPVAMAPSV 413
Query: 398 GYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGY 447
M GA G G Q +YG+G P ++P GY
Sbjct: 414 APRMQMYPPGAPGLG-------QQFLYGQGP--------PAMIPQAGFGY 448
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 116/261 (44%), Gaps = 18/261 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
P+ + +Y+G + ++ L SIG+V +R+ + + + GYA+V + + +
Sbjct: 52 PNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSAADGER 111
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+EELN +KGK + +Q + +FI N+ + G ++
Sbjct: 112 ALEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NIL 170
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ D ++G+ F+ Y A + + ++ L++ V P+ S
Sbjct: 171 SCKVAVDEH--GNSKGYGFVHYETSDAANQAIKSVNG--MLLNEKKVFVGHHIPKKDRMS 226
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +YVKN+ + T D +ELF +G+IT + G+ R +GFV+F
Sbjct: 227 KFEEMKANFTNIYVKNIDAETTDDEFRELFEKYGQITSASLAHDDQGKVRG-FGFVNFIR 285
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
A KA+ + GQ L
Sbjct: 286 HEDAAKAVDELNDLDFKGQKL 306
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 102 KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAK 161
K D K E+ A + + +Y+ I + +DD+ R + G++T + D G+ +
Sbjct: 221 KKDRMSKFEEMKA---NFTNIYVKNIDAETTDDEFRELFEKYGQITSASLAH-DDQGKVR 276
Query: 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G+ FV F E A++A++ELN + KG+K+ AQ KH
Sbjct: 277 GFGFVNFIRHEDAAKAVDELNDLDFKGQKLYVGRAQKKH 315
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 97/226 (42%), Gaps = 36/226 (15%)
Query: 130 DASDDD--LRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
DA+ D+ L + G + ++ + G +KGY FV + T + A+QAI+ +N L
Sbjct: 151 DAAIDNKALHDTFAAFGNILSCKVAV-DEHGNSKGYGFVHYETSDAANQAIKSVNGMLLN 209
Query: 188 GKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
KK+ K +A +++ N+ +D+ R+ K G + S L
Sbjct: 210 EKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDAETTDDEFRELFEKYGQ-ITSASLA 268
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
D Q + RGF F+ + H A + ++++ FK V A ++
Sbjct: 269 HDDQG--KVRGFGFVNFIRHEDAAKAVDELNDLDFK--GQKLYVGRAQKKHEREEELRKQ 324
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E SA Q LYVKNL +I + L+++F +G IT +
Sbjct: 325 YEAQRQEKSAKYQGVNLYVKNLADEIDDEELRKIFEPYGAITSAKV 370
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 118/262 (45%), Gaps = 18/262 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + + +Y+G + ++ L IG V +R+ + + + GYA+V +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGE 114
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+EELN +KG+ + +Q + +FI N+ + G +
Sbjct: 115 KALEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 173
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ +D A ++G+ F+ Y A + + ++ L++ V P+
Sbjct: 174 LSCKVAQDETGA--SKGYGFVHYETDEAASQAIKHVNG--MLLNEKKVYVGHHIPKKDRQ 229
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S ++KA +YVKN+ D+T+D ++LF +G +T + + G+ R +GFV+F
Sbjct: 230 SKFEEMKANFTNVYVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRG-FGFVNFT 288
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
SA KA+ + GQ L
Sbjct: 289 THESASKAVDELNNKDFHGQDL 310
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 85 AQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKS 142
A KH +G E KV +K + ++ + + + VY+ I D ++DD R +
Sbjct: 203 AIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIAADVTEDDFRQLFEK 262
Query: 143 IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G+VT + + ++ G+++G+ FV F T E AS+A++ELN+ + G+ + AQ KH
Sbjct: 263 YGDVTSSSLARDQE-GKSRGFGFVNFTTHESASKAVDELNNKDFHGQDLYVGRAQKKH 319
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 118/260 (45%), Gaps = 18/260 (6%)
Query: 113 LALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE 172
+A P + +Y+G + SD L G+V VR+ + S + GYA+V F
Sbjct: 33 VAQPLPTTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPL 92
Query: 173 LASQAIEELNSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG 224
A++A+E LN L K I+ S +FI N+ + + + + G
Sbjct: 93 DAARALEVLNFAPLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKMIDNKSLHETFSSFG 152
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 284
++S ++ D Q++GF F++Y A+ + + ++ L ++ P R
Sbjct: 153 -TILSCKVAMD--EGGQSKGFGFVQYEKEEAAQNAIKSLNG---MLINDKPVFVGPFLRK 206
Query: 285 AE---SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
E S ++ ++VKNL + T++ L ++F +G IT V+ G+ R +GF++
Sbjct: 207 QERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGNITSAVVMIGMDGKSRC-FGFIN 265
Query: 342 FAERSSAMKALKNTEKYEID 361
F +A +A++ +I+
Sbjct: 266 FENPDAASRAVQELNGKKIN 285
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/329 (21%), Positives = 140/329 (42%), Gaps = 43/329 (13%)
Query: 92 DEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
++ ++V S++D ++ + +++ + + L S G + ++
Sbjct: 108 NKPIRVMYSNRDPSSRRSGS--------ANIFIKNLDKMIDNKSLHETFSSFGTILSCKV 159
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------ 199
+ G++KG+ FV + +E A AI+ LN + K + K
Sbjct: 160 AM-DEGGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERDHSFDKTKF 218
Query: 200 HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 259
+ +F+ N+ + ++D+ K + G ++ ++ ++R F FI + N A +
Sbjct: 219 NNVFVKNLSESTTKEDLLKIFGEYGNITSAVVMIG---MDGKSRCFGFINFENPDAASRA 275
Query: 260 RQKMSNPKFKLDDNAPTVSWADPRN--------------AESSAASQVKALYVKNLPKDI 305
Q+++ K ++D V A ++ +++ Q LY+KNL I
Sbjct: 276 VQELNGKK--INDKEWYVGRAQKKSEREMELKRRFEQILKDAADKYQGLNLYLKNLDDSI 333
Query: 306 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
D+L+ELF++ GKIT + + G + GFV F+ R A +AL I G+ L
Sbjct: 334 GDDQLRELFSNFGKITSCKVMRDQNGLSKGS-GFVAFSTREEASQALTEMNGKMISGKPL 392
Query: 366 DCSLAKPQADQKTSGGSNSQKSALNPTYP 394
+ A+ + D+K +Q S + P P
Sbjct: 393 YVAFAQRKEDRKAM--LQAQFSQMRPAVP 419
>gi|389586343|dbj|GAB69072.1| polyadenylate-binding protein, partial [Plasmodium cynomolgi strain
B]
Length = 883
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 128/258 (49%), Gaps = 24/258 (9%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L ++G V+ +R+ + + ++ GYA+V + A +A++
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
LN +KG+ + + HR +F+ N+ ++ + + G ++
Sbjct: 76 TLNYTNIKGQPARLMWS---HRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFG-NIL 131
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ D +++ + F+ Y + A+ + +K++ +L V ++ ++
Sbjct: 132 SCKVATDE--FGKSKSYGFVHYEDEESAKEAIEKVNG--IQLGSKNVYVGHFIKKSERAT 187
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
++ LYVKN P +T+ LKELF+ +G+IT +++ K + ++ F+++A+ SA
Sbjct: 188 NDTKFTNLYVKNFPDSVTETHLKELFSPYGEITSMIV---KTDNKNRKFCFINYADSESA 244
Query: 349 MKALKNTEKYEI--DGQV 364
A++N +I DGQ+
Sbjct: 245 KNAMENLNGKKITDDGQI 262
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 281 DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGF 339
D N ES Q LY+KNL I LKELF +G IT + + +E+S+ +GF
Sbjct: 436 DNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTITSAKV--MRDDKEQSKGFGF 493
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370
V FA + A KA+ I+G+ L LA
Sbjct: 494 VCFALQEEANKAVTEMHLKIINGKPLYVGLA 524
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G +Y+ + D L+ + G +T ++M+ D ++KG+ FV F +E A++A+
Sbjct: 448 GVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMR-DDKEQSKGFGFVCFALQEEANKAV 506
Query: 179 EELNSCELKGKKIKCSAAQAK 199
E++ + GK + A+ +
Sbjct: 507 TEMHLKIINGKPLYVGLAEKR 527
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 130/270 (48%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN D+ +RLKELF+ +GK V + G+ + +GFV F +
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKG-FGFVSFEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ +I+G+++ A+ + +++
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQ 273
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 129/285 (45%), Gaps = 39/285 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T++ A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQDAADRAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+G+D +++ +K G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYG-KT 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS----NPKF--------KLDDNAP 275
+S++++ D ++ +++GF F+ + H A + ++M+ N K K++ A
Sbjct: 218 LSVKVMTD--SSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E + Q LY+KNL I ++L++ F+ G IT AK E
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS-----AKVMLEDG 330
Query: 336 R---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
R +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 331 RSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 29/200 (14%)
Query: 75 ETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDD 134
ET+D D + + + KV K++ AEL A + VY+ D D+
Sbjct: 146 ETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDE 205
Query: 135 DLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194
L+ G+ V++M SG++KG+ FV+F E A++A+EE+N ++ GK +
Sbjct: 206 RLKELFSKYGKTLSVKVMT-DSSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVG 264
Query: 195 AAQAK------------------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISI 230
AQ K L+I N+ ++ +RK + G SI
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG----SI 320
Query: 231 ELVKDPQNANQNRGFAFIEY 250
K +++GF F+ +
Sbjct: 321 TSAKVMLEDGRSKGFGFVCF 340
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + + A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPDEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|297834512|ref|XP_002885138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330978|gb|EFH61397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 542
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 130/273 (47%), Gaps = 26/273 (9%)
Query: 105 EKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYA 164
E +H+ + A +Y+G + D ++ DL H V V + + +G++ YA
Sbjct: 12 ENHQHSSMFA------SLYVGDLSPDVTEQDLIHRFSLTVPVLSVHLCRNSVTGKSLCYA 65
Query: 165 FVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--AKHR-------LFIGNVPRNWGEDD 215
++ F + AS A+ LN +LKGK ++ +Q +R L++ N+ +
Sbjct: 66 YINFDSPFSASNAMARLNHTDLKGKAMRIMWSQRDLSYRRRTGFGNLYVKNLDISITSSG 125
Query: 216 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAP 275
+ + G ++S ++V++ Q++GF F+++ A +R + +D
Sbjct: 126 LERMFNPFGV-ILSCKVVEEN---GQSKGFGFVQFETEQSAVTARSALHGS--MVDGKKL 179
Query: 276 TVSWADPRNAESSAASQ--VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
V+ +N + A +YVKNL ++IT+D L LF+ +G ++ VV+ + G
Sbjct: 180 FVAKFINKNERVAMAGNKGFTNVYVKNLIENITEDILHRLFSQYGTVSSVVV--MRDGMG 237
Query: 334 RSR-YGFVHFAERSSAMKALKNTEKYEIDGQVL 365
RSR +GFV+F +A KA+ + ++ + L
Sbjct: 238 RSRGFGFVNFCHPENAKKAVDSLHGRQVGSKTL 270
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 130/278 (46%), Gaps = 29/278 (10%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+ + + L G + ++++ ++G++KG+ FV F T++ A A L
Sbjct: 112 LYVKNLDISITSSGLERMFNPFGVILSCKVVE--ENGQSKGFGFVQFETEQSAVTARSAL 169
Query: 182 NSCELKGKKIKCS--------AAQAKHR----LFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
+ + GKK+ + A A ++ +++ N+ N ED + + ++ G V S
Sbjct: 170 HGSMVDGKKLFVAKFINKNERVAMAGNKGFTNVYVKNLIENITEDILHRLFSQYGT-VSS 228
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAE------YSRQKMSNPKF-----KLDDNAPTVS 278
+ +++D ++RGF F+ + + A+ + RQ S F K D+ +
Sbjct: 229 VVVMRD--GMGRSRGFGFVNFCHPENAKKAVDSLHGRQVGSKTLFVGKALKRDERREMLK 286
Query: 279 WADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 338
N + + + LYVKNL + + L+E+F +G+I + + G+ + +G
Sbjct: 287 HKYRDNFIAKSNMRWSNLYVKNLSESMNDTTLREIFGRYGQIVSAKVMRHENGRSKG-FG 345
Query: 339 FVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
FV F+ R + +A + + +DG++L +A+ + D+
Sbjct: 346 FVCFSNREESKQAKRYLNGFSVDGKLLVVRVAERKEDR 383
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 119/262 (45%), Gaps = 18/262 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + + +Y+G + ++ L IG V +R+ + + + GYA+V + +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGE 114
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+EELN +KG+ + +Q + +FI N+ + G +
Sbjct: 115 KALEELNYTPIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 173
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ +D A ++G+ F+ Y A + + ++ L++ V + P+
Sbjct: 174 LSCKVAQDETGA--SKGYGFVHYETDEAAAQAIKHVNG--MLLNEKKVYVGYHIPKKDRQ 229
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S ++KA +YVKN+ D+T + +ELF +G +T + + G+ R +GFV+F
Sbjct: 230 SKFEEMKANFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQEGKSRG-FGFVNFT 288
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
+A KA+ + GQ L
Sbjct: 289 THEAAYKAVDELNGNDFRGQEL 310
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 79/158 (50%), Gaps = 29/158 (18%)
Query: 102 KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAK 161
K D + K E+ A + + VY+ I D +D++ R + G+VT + + ++ G+++
Sbjct: 225 KKDRQSKFEEMKA---NFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQE-GKSR 280
Query: 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------------- 200
G+ FV F T E A +A++ELN + +G+++ AQ KH
Sbjct: 281 GFGFVNFTTHEAAYKAVDELNGNDFRGQELYVGRAQKKHEREEELRKSYEAARLEKASKY 340
Query: 201 ---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L+I N+ + +D +R+ ++ GP + S ++++D
Sbjct: 341 QGVNLYIKNLDDDVDDDKLRQMFSEFGP-ITSAKVMRD 377
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 95/430 (22%), Positives = 166/430 (38%), Gaps = 104/430 (24%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + ++G +KGY FV + T E A+QAI+ +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DETGASKGYGFVHYETDEAAAQAIKHV 207
Query: 182 NSCELKGKKIKCSA------AQAKH--------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ Q+K +++ N+ + +++ R+ K G V
Sbjct: 208 NGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNISPDVTDNEFRELFEKYG-DV 266
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D + ++RGF F+ + H A + +++ F+ + V A ++
Sbjct: 267 TSSSLARDQEG--KSRGFGFVNFTTHEAAYKAVDELNGNDFRGQE--LYVGRAQKKHERE 322
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPG 331
E ++ Q LY+KNL D+ D+L+++F+ G IT KV+ + G
Sbjct: 323 EELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDDKLRQMFSEFGPITSAKVMRDSLQEG 382
Query: 332 QERSR-----------------------------------------YGFVHFAERSSAMK 350
+E + +GFV F+ A K
Sbjct: 383 EEEVKDQEKDKENQKEAENEAEAESAENAEKKAEKKGDKKLGKSKGFGFVCFSNPDDATK 442
Query: 351 ALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALG 410
A+ + I+ + L +LA+ + +K+ ++ Q GM
Sbjct: 443 AVAEMNQRMINNKPLYVALAQRKDVRKSQLEASIQARNQLRMQQAAAAAGM--------- 493
Query: 411 AGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRGGA 470
P F QP V+ APG P +P G G QPG+ P P+ GR G
Sbjct: 494 ----PQQFMQPPVF---YAPG---QQPGFIPQGGRGMPFPQPGM------PLPQGGRPGQ 537
Query: 471 --GSSSSGGR 478
G GGR
Sbjct: 538 FPGYPQQGGR 547
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 197 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 256
Q L++G + + E + + ++IG V SI + +D ++ G+A++ Y +
Sbjct: 56 QNSASLYVGELDPSVTEAMLFELFSQIG-AVASIRVCRDAV-TRRSLGYAYVNYNSTPDG 113
Query: 257 EYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAH 316
E + ++++ K S DP ++ + +++KNL I L + FA
Sbjct: 114 EKALEELNYTPIKGRPCRIMWSQRDPALRKTGQGN----VFIKNLDVAIDNKALHDTFAA 169
Query: 317 HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 366
G I + + G + YGFVH+ +A +A+K+ ++G +L+
Sbjct: 170 FGNILSCKVAQDETGASKG-YGFVHYETDEAAAQAIKH-----VNGMLLN 213
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 125/270 (46%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N LKG+ I+ +Q +FI N+ + + + G ++S +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+ D + RGF F+ + H A+ + M+ L+D V R AE
Sbjct: 130 VACDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDRKVFVGHFKSRREREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +YVKNLP D+ + L+ELF+ GK+ V + G R +GFV+F +
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+ + E+ G++L A+ + +++
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQ 273
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 121/282 (42%), Gaps = 33/282 (11%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + ++ D ++G+ FV F T E A QAI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKV--ACDEHGSRGFGFVHFETHEAAQQAINTM 158
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L +K+ +++ +++ N+P + E +++ ++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQELFSQFG-KM 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSWADPRNA 285
+S+++++D N+ +R F F+ + H A+ + M+ + +L + +N
Sbjct: 218 LSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 286 ESSAASQVKA----------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
Q+K LYVKNL I D+L++ F+ +G IT + G
Sbjct: 276 LKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV--MTEGGHSK 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERK 375
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 29/179 (16%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV +++ AEL A + +Y+ +P D + L+ G++ V++M+
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMR-D 225
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHR------ 201
+SG ++ + FV F E A +A+ +N E+ G+ + AQ K R
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQ 285
Query: 202 ----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L++ N+ + +D +RK + G I K ++GF F+ +
Sbjct: 286 DRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYG----VITSAKVMTEGGHSKGFGFVCF 340
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 17/168 (10%)
Query: 33 VDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGIDAQKHYDGD 92
V + DN V +E+ EE ++ V + +E + ++ AQK +
Sbjct: 220 VKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH------MNGKEVSGRLLYAGRAQKRVERQ 273
Query: 93 EEMKV-AESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
E+K E K D +++ G +Y+ + DD LR G +T ++
Sbjct: 274 NELKRRFEQMKQDRLRRY--------QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV 325
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
M + G +KG+ FV F + E A++A+ E+N + K + + AQ K
Sbjct: 326 MT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|449513289|ref|XP_004164285.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
RBP47B'-like [Cucumis sativus]
Length = 427
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 156/355 (43%), Gaps = 64/355 (18%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++G + + + L GEV ++I++ K +G+ +GY FV F + A + ++
Sbjct: 22 LWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQTY 81
Query: 182 NSCELKGK----KIKCSA---------AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
N ++ G ++ ++ A +H +F+G++ + + +++ P V
Sbjct: 82 NGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVR 141
Query: 229 SIELVKDPQNANQNRGFAFIEYY-----NHACAEYS---------RQKMSNPKFKLDDNA 274
++V DP N +++G+ F+++ N A +E + R + PK L ++
Sbjct: 142 GAKVVTDP-NTGRSKGYGFVKFADENERNRAMSEMNGXYCSTRPMRISAATPKKPLVFSS 200
Query: 275 PTVSWADPRNAES-----SAASQVKAL-----------YVKNLPKDITQDRLKELFAHHG 318
TV N ES + + V L +V NL +IT++ LK+ F G
Sbjct: 201 NTVX-VKVMNNESMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNITEEELKQTFLQFG 259
Query: 319 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK-PQADQK 377
+I V IP K GFV F R+SA +A++ + I QV+ S + P A Q
Sbjct: 260 EIAYVKIPAGKGC------GFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAAKQD 313
Query: 378 TSGGSNSQKSALNPT-YPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPG 431
+ + ++P + + GY GG Y A G G V P +YG GA G
Sbjct: 314 LT----TWGQQVDPNQWSAYYGY---GGTYDAYGYGVV----QDPSLYGYGAYSG 357
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 115/261 (44%), Gaps = 17/261 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 51 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KG+ + +Q + +FI N+ + G ++
Sbjct: 111 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 169
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A+ + + ++ L+D V + S
Sbjct: 170 SCKVAQD--EFGNSKGYGFVHYETAEAAQNAIKHVNG--MLLNDKKVFVGHHIAKKDRQS 225
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +YVKN+ +D T + +ELF G+IT + + +GFV+F
Sbjct: 226 KFEEMKANFTNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFGFVNFTS 285
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
SA A+ N + + Q L
Sbjct: 286 HESAAAAVDNLNEKDFKSQKL 306
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 101/232 (43%), Gaps = 33/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A AI+ +
Sbjct: 144 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAAQNAIKHV 202
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ AK +++ N+ ++ +++ R+ K G +
Sbjct: 203 NGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTDEEFRELFEKFGE-I 261
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D ++ ++RGF F+ + +H A + ++ FK V A ++
Sbjct: 262 TSATLARDSESG-KSRGFGFVNFTSHESAAAAVDNLNEKDFK--SQKLYVGRAQKKHERE 318
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LY+KNL DI ++L++LF+ +G IT +
Sbjct: 319 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRDLFSGYGTITSAKV 370
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 102 KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAK 161
K D + K E+ A + + VY+ I D +D++ R + GE+T + + +SG+++
Sbjct: 220 KKDRQSKFEEMKA---NFTNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSR 276
Query: 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G+ FV F + E A+ A++ LN + K +K+ AQ KH
Sbjct: 277 GFGFVNFTSHESAAAAVDNLNEKDFKSQKLYVGRAQKKH 315
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 129/287 (44%), Gaps = 32/287 (11%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + + L + G + ++ + GE++GY FV F +E A +AI+ +
Sbjct: 98 IFIKNLNKEIDNKALYDTFSAFGTILSCKV-AADEKGESRGYGFVHFEKEEDAQKAIDTV 156
Query: 182 NSCELKGKKIKCSAAQAKH-----------RLFIGNVPRNWG-EDDMRKAVTKIGPGVIS 229
N L + + + ++ +++ N+P ++ DD++K K G + S
Sbjct: 157 NGKMLLKQVVTVTKFLSRKEREQQGGRTYTNIYVKNLPDSYATNDDLKKLFEKFGT-ITS 215
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA--------- 280
L KD + ++RGF F+ + N A + + M+ + + D V A
Sbjct: 216 TFLAKDEND--KSRGFGFVNFENSEAANAAVEAMNEKEIETDRKL-FVGRAMKKHERERE 272
Query: 281 -----DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
D E ++ LY+K+LP+D+T+D L++ F+ G IT + I G R
Sbjct: 273 LKRIHDKIRQERDEKNKNSNLYIKHLPEDVTEDALRDKFSKFGTITSLKIMTDNNGDSRG 332
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS 382
+GFV+F A A++ IDG+ L +LA + D++ S
Sbjct: 333 -FGFVNFDSADEAAAAIQEMHGSMIDGKPLYVALALRKVDRQKQLAS 378
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 116/252 (46%), Gaps = 16/252 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + ++ L F +G V +R+ + S ++ GYA+V ++ A A+E
Sbjct: 8 ASLYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHALE 67
Query: 180 ELNSCELKGKKIKCSAAQ---AKHR-----LFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
ELN ++ K + AQ A R +FI N+ + + + G ++S +
Sbjct: 68 ELNFEKIHDKPCRIMWAQRNPAARRSGAGNIFIKNLNKEIDNKALYDTFSAFGT-ILSCK 126
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D + ++RG+ F+ + A+ + + N K L + + E
Sbjct: 127 VAADEK--GESRGYGFVHFEKEEDAQKAIDTV-NGKMLLKQVVTVTKFLSRKEREQQGGR 183
Query: 292 QVKALYVKNLPKDI-TQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAM 349
+YVKNLP T D LK+LF G IT + AK ++SR +GFV+F +A
Sbjct: 184 TYTNIYVKNLPDSYATNDDLKKLFEKFGTITSTFL--AKDENDKSRGFGFVNFENSEAAN 241
Query: 350 KALKNTEKYEID 361
A++ + EI+
Sbjct: 242 AAVEAMNEKEIE 253
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 14/137 (10%)
Query: 66 VEEEVEEEEETEDVVDGIDAQKHYDGDEEMKVAES---DKDDEKKKHAELLALPPHGSEV 122
VE E+E ET+ + A K ++ + E+K + DEK K+ S +
Sbjct: 244 VEAMNEKEIETDRKLFVGRAMKKHERERELKRIHDKIRQERDEKNKN----------SNL 293
Query: 123 YLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN 182
Y+ +P D ++D LR G +T ++IM ++G+++G+ FV F + + A+ AI+E++
Sbjct: 294 YIKHLPEDVTEDALRDKFSKFGTITSLKIMT-DNNGDSRGFGFVNFDSADEAAAAIQEMH 352
Query: 183 SCELKGKKIKCSAAQAK 199
+ GK + + A K
Sbjct: 353 GSMIDGKPLYVALALRK 369
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 120/261 (45%), Gaps = 17/261 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 55 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 114
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KG+ + +Q + +FI N+ + G ++
Sbjct: 115 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 173
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L++ V + S
Sbjct: 174 SCKVAQD--EYGNSKGYGFVHYETAEAATNAIKHVNG--MLLNEKKVFVGHHIAKKDRQS 229
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +YVKN+ +D+T + + LF +G+IT + + +GFV+F++
Sbjct: 230 KFEEMKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSD 289
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
+A A++ +YE+ GQ L
Sbjct: 290 HEAASAAVEALNEYELKGQKL 310
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 84 DAQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCK 141
+A KH +G E KV +K + ++ + + + +Y+ + D +D++ R +
Sbjct: 201 NAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDEEFRGLFE 260
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
GE+T + + ++G+++G+ FV F E AS A+E LN ELKG+K+ AQ KH
Sbjct: 261 KYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKH 319
>gi|221061487|ref|XP_002262313.1| polyadenylate-binding protein [Plasmodium knowlesi strain H]
gi|193811463|emb|CAQ42191.1| polyadenylate-binding protein, putative [Plasmodium knowlesi strain
H]
Length = 874
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 128/258 (49%), Gaps = 24/258 (9%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L ++G V+ +R+ + + ++ GYA+V + A +A++
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
LN +KG+ + + HR +F+ N+ ++ + + G ++
Sbjct: 76 TLNYTNIKGQPARLMWS---HRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFG-NIL 131
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ D +++ + F+ Y + A+ + +K++ +L V R+ ++
Sbjct: 132 SCKVATDE--FGKSKSYGFVHYEDEESAKEAIEKVNG--IQLGSKNVYVGHFIKRSERAT 187
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
++ LYVKN P +T+ LK+LF+ +G+IT +++ K + ++ F+++A+ SA
Sbjct: 188 NDTKFTNLYVKNFPDSVTEAHLKQLFSPYGEITSMIV---KTDNKNRKFCFINYADSESA 244
Query: 349 MKALKNTEKYEI--DGQV 364
A++N +I DGQ+
Sbjct: 245 KNAMENLNGKKITDDGQI 262
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 281 DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGF 339
D N ES Q LY+KNL I LKELF +G IT + + +E+S+ +GF
Sbjct: 427 DNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTITSAKV--MRDDKEQSKGFGF 484
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370
V FA++ A KA+ I+G+ L LA
Sbjct: 485 VCFAQQEEANKAVTEMHLKIINGKPLYVGLA 515
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G +Y+ + D L+ + G +T ++M+ D ++KG+ FV F +E A++A+
Sbjct: 439 GVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMR-DDKEQSKGFGFVCFAQQEEANKAV 497
Query: 179 EELNSCELKGKKIKCSAAQAK 199
E++ + GK + A+ +
Sbjct: 498 TEMHLKIINGKPLYVGLAEKR 518
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 124/270 (45%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L +G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KG+ I+ +Q +FI N+ + + + G ++S +
Sbjct: 71 TMNFEMIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEASIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE----S 287
+ D + RGF F+ + H A+++ M+ L+D+ V R
Sbjct: 130 VACDEHGS---RGFGFVHFETHEAAQHAINTMNG--MLLNDHKVFVGHFKSRREREVELG 184
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+ A + +YVKNL D+ + L+ELF+ GK+ V + G R +GFV+F
Sbjct: 185 ARAMEFTNIYVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGHSRG-FGFVNFETHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+ + E+ G++L A+ + +++
Sbjct: 244 AQKAVVHMNGKEVSGRLLYVGRAQKRVERQ 273
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 75/368 (20%), Positives = 144/368 (39%), Gaps = 63/368 (17%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + ++ D ++G+ FV F T E A AI +
Sbjct: 101 IFIKNLEASIDNKALYDTFSTFGNILSCKV--ACDEHGSRGFGFVHFETHEAAQHAINTM 158
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L K+ +++ +++ N+ + E +++ ++ G +
Sbjct: 159 NGMLLNDHKVFVGHFKSRREREVELGARAMEFTNIYVKNLQADVDEQGLQELFSQFGK-M 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSWADPRNA 285
+S+++++D ++ +RGF F+ + H A+ + M+ + +L + +N
Sbjct: 218 LSVKVMRD--SSGHSRGFGFVNFETHEEAQKAVVHMNGKEVSGRLLYVGRAQKRVERQNE 275
Query: 286 ESSAASQVKA----------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
Q+K LYVKNL I ++L++ F+ +G IT + G
Sbjct: 276 LKRRFEQMKQDRMNRYQGVNLYVKNLDDSIDDEKLRKEFSPYGMITSAKV--MTEGGHSK 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPP 395
+GFV F+ A KA+ + + L +LA+ + + +K+ L Y
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEE---------RKAILTNQYMQ 384
Query: 396 HLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQ 455
L ALG+ ++ F QP Y A P P G+ Y
Sbjct: 385 RL------STMRALGSPFL-GSFQQPTSYFLPAVPQ---------PPGQAAYY-----GS 423
Query: 456 QHNPPPQP 463
PPPQP
Sbjct: 424 SSMPPPQP 431
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 85 AQKHYDGDEEMKV-AESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
AQK + E+K E K D ++ G +Y+ + D+ LR
Sbjct: 266 AQKRVERQNELKRRFEQMKQDRMNRY--------QGVNLYVKNLDDSIDDEKLRKEFSPY 317
Query: 144 GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
G +T ++M + G +KG+ FV F + E A++A+ E+N + K + + AQ K
Sbjct: 318 GMITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 124/270 (45%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KG+ I+ +Q +FI N+ + + + G ++S +
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE----S 287
+V D + RGF F+ + H A+ + M+ L+D V R
Sbjct: 130 VVCDEHGS---RGFGFVHFETHEAAQNAISTMNG--MLLNDRKVFVGHFKSRREREVELG 184
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+ A + +YVKNL D+ + RL++LF+ GK+ V + G R +GFV+F +
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDVSGHSRG-FGFVNFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+ N E+ G++L A+ + +++
Sbjct: 244 AQKAVVNMNGREVSGRLLYVGRAQKRVERQ 273
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 131/322 (40%), Gaps = 52/322 (16%)
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH- 200
+ G + +++ D ++G+ FV F T E A AI +N L +K+ +++
Sbjct: 121 TFGNILSCKVVC--DEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRRE 178
Query: 201 -------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAF 247
+++ N+ + E ++ ++ G ++S+++++D + +RGF F
Sbjct: 179 REVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGK-MLSVKVMRD--VSGHSRGFGF 235
Query: 248 IEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA---------- 295
+ + H A+ + M+ + +L + +N Q+K
Sbjct: 236 VNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVN 295
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
LYVKNL I ++L++ F+ +G IT + G +GFV F+ A KA+
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVT-- 351
Query: 356 EKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVP 415
E++G+++ KP G +K+ L Y L ALG G +
Sbjct: 352 ---EMNGRIVG---TKPLYVALAEG----RKAILTNQYMQRL------STMRALG-GPIL 394
Query: 416 AGFAQPMVYGRGAAPGGMAMLP 437
F QP Y A P A P
Sbjct: 395 GSFQQPASYFLPAVPQVTACPP 416
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 85 AQKHYDGDEEMKV-AESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
AQK + E+K E K D ++ G +Y+ + D+ LR
Sbjct: 266 AQKRVERQNELKRRFEQMKQDRLTRY--------QGVNLYVKNLDDSIDDEKLRKEFSPY 317
Query: 144 GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF 203
G +T ++M + G +KG+ FV F + E A++A+ E+N + K + + A+ + +
Sbjct: 318 GVITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAEGRKAIL 375
>gi|218195846|gb|EEC78273.1| hypothetical protein OsI_17967 [Oryza sativa Indica Group]
Length = 1001
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 128/277 (46%), Gaps = 46/277 (16%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+++Y+ + + D L H GEVT ++ K +G +KGY FV + + A++A+
Sbjct: 392 AKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVI 451
Query: 180 ELNSCELKGKKIKC-----------SAAQA-----------KHRLFIGNVPRNWGEDDMR 217
LN + G+KI+ SA ++ L++ N+P + D +
Sbjct: 452 HLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSI---DTK 508
Query: 218 KAVTKIGP--GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK-------F 268
K V P + +V DP + +G+ FI++ + A + M+
Sbjct: 509 KLVELFLPFGKITHARVVADPDTFSA-KGYGFIKFTDSESATKAIAAMNGALVGGEMIIV 567
Query: 269 KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 328
++ +P+ S + + + S+ LY+ NLP+ +T D++ LFA G+ITKV++
Sbjct: 568 RVAGLSPSASISAVQTTQDINKSR---LYITNLPRSMTADKMVNLFAPFGQITKVLM--- 621
Query: 329 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
Y V +A+ SA+KA+++ + Y ++G+ L
Sbjct: 622 -----NLEYSLVWYADAPSAIKAVQHMDGYMVEGKRL 653
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 120/293 (40%), Gaps = 39/293 (13%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+ +P L G++T R++ D+ AKGY F+ F E A++AI
Sbjct: 494 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 553
Query: 180 ELNSCELKGKKI-----------KCSAAQA-----KHRLFIGNVPRNWGEDDMRKAVTKI 223
+N + G+ I SA Q K RL+I N+PR+ D M V
Sbjct: 554 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKM---VNLF 610
Query: 224 GP-GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP 282
P G I+ L+ N ++ + Y + A + Q M + S
Sbjct: 611 APFGQITKVLM--------NLEYSLVWYADAPSAIKAVQHMDGYMVEGKRLVVKRSELCT 662
Query: 283 RNAESSAASQVK-----ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRY 337
NA + +K LYV +P +T+D+ +LF G++ + + RY
Sbjct: 663 TNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARM------FRFQRY 716
Query: 338 GFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALN 390
G V F S A A+ + + Y+I G +L +A A+ + G+ + + + N
Sbjct: 717 GMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSN 769
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 114/277 (41%), Gaps = 29/277 (10%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G +P L G++ R++ +G ++GY FV + AS+AI+
Sbjct: 297 TNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIK 356
Query: 180 ELNSCELKGKKIKCSAA---------------QAKHRLFIGNVPRNWGEDDMRKAVTKIG 224
+N ++G+ ++ A +L++ N+ + D + G
Sbjct: 357 RMNGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFG 416
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYN-HACAE---------YSRQKMSNPKFKLDDNA 274
V + ++ KD ++G+ F++Y + H AE +K+ +
Sbjct: 417 E-VTNAKVAKD-HTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTL 474
Query: 275 PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 334
P + P + + LYV N+P I +L ELF GKIT + A P
Sbjct: 475 PNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARV-VADPDTFS 533
Query: 335 SR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370
++ YGF+ F + SA KA+ + G+++ +A
Sbjct: 534 AKGYGFIKFTDSESATKAIAAMNGALVGGEMIIVRVA 570
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 125/294 (42%), Gaps = 55/294 (18%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+ +P + D + + G++T+V +M + Y+ V + A +A++
Sbjct: 590 SRLYITNLPRSMTADKMVNLFAPFGQITKV-LMNLE-------YSLVWYADAPSAIKAVQ 641
Query: 180 ELNSCELKGKKI------KCS--AAQAKHR---------LFIGNVPRNWGEDDMRKAVTK 222
++ ++GK++ C+ A+QA + L++G VP + ED
Sbjct: 642 HMDGYMVEGKRLVVKRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQF------ 695
Query: 223 IGPGVISIELVKDPQNANQNRGFAF-----IEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277
I+L + Q R F F + + N +CA + + + A V
Sbjct: 696 -------IDLFRPFGRVVQARMFRFQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRV 748
Query: 278 SW--ADPRNAESSAASQVKA----------LYVKNLPKDITQDRLKELFAHHGKITKVVI 325
+ A+ A+ + SQ+ + LYV +LP + +RL +LF G+IT+ +
Sbjct: 749 AGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKV 808
Query: 326 PPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 379
+ +GFV FA+ SA AL + Y +DG VL+ +A D +S
Sbjct: 809 VVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIAGVHPDAMSS 862
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 120/261 (45%), Gaps = 18/261 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 42 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 101
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KGK + +Q + +FI N+ + G ++
Sbjct: 102 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDNAIDNKALHDTFAAFG-NIL 160
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D + AN ++G+ F+ Y A + + ++ L+D V + S
Sbjct: 161 SCKVAQD-EFAN-SKGYGFVHYETAEAANNAIKHVNG--MLLNDKKVFVGHHISKKDRQS 216
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +Y+KN+ +IT D + +F G+IT + + G+ R +GFV++A
Sbjct: 217 KFEEMKANFTNIYIKNIDLEITDDEFRVMFEAFGEITSATLSHDQDGKSRG-FGFVNYAN 275
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
SA A+ + E+ Q L
Sbjct: 276 HESAEAAVAEMNEKEVKTQKL 296
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 96/232 (41%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + + L + G + ++ + + +KGY FV + T E A+ AI+ +
Sbjct: 135 VFIKNLDNAIDNKALHDTFAAFGNILSCKVAQ-DEFANSKGYGFVHYETAEAANNAIKHV 193
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ +K ++I N+ +D+ R G +
Sbjct: 194 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDLEITDDEFRVMFEAFGE-I 252
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L D ++RGF F+ Y NH AE + +M+ + K V A ++
Sbjct: 253 TSATLSHD--QDGKSRGFGFVNYANHESAEAAVAEMNEKEVKTQK--LYVGRAQKKHERE 308
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL DI ++L++LF +G IT +
Sbjct: 309 EELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEKLRDLFTPYGTITSAKV 360
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 127/269 (47%), Gaps = 18/269 (6%)
Query: 109 HAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTF 168
EL + + + +Y+G + ++ L IG+V+ +R+ + + ++ GYA+V +
Sbjct: 52 QGELGGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNY 111
Query: 169 RTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAV 220
E +AI+ELN ++G+ + +Q +FI N+ +
Sbjct: 112 HKFEDGEKAIDELNYSLVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTF 171
Query: 221 TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA 280
+ G ++S ++ D + Q++ F F+ Y AE + + ++ L+D V
Sbjct: 172 SAFG-RILSCKVATD--DMGQSKCFGFVHYETGEAAEAAIENVNG--MLLNDREVFVGKH 226
Query: 281 DPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 336
+ S ++KA +YVKN+ T+ +ELFA +GKIT + + + G+ +
Sbjct: 227 VSKKDRESKFEEMKANYTNIYVKNIDLGFTEKEFEELFAPYGKITSIYLEKDQDGKSKG- 285
Query: 337 YGFVHFAERSSAMKALKNTEKYEIDGQVL 365
+GFV++ E SA+ A++ EI+GQ +
Sbjct: 286 FGFVNYEEHKSAVDAVEALNDKEINGQKI 314
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 89/371 (23%), Positives = 145/371 (39%), Gaps = 50/371 (13%)
Query: 129 HDASDDDLRH-FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
H A D+ H + G + ++ D G++K + FV + T E A AIE +N L
Sbjct: 159 HPAIDNKALHDTFSAFGRILSCKVAT-DDMGQSKCFGFVHYETGEAAEAAIENVNGMLLN 217
Query: 188 GKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
+++ +K +++ N+ + E + + G + SI L
Sbjct: 218 DREVFVGKHVSKKDRESKFEEMKANYTNIYVKNIDLGFTEKEFEELFAPYGK-ITSIYLE 276
Query: 234 KDPQNANQNRGFAFIEYYNHACA----------EYSRQKM--SNPKFKLDDNAPTVSWAD 281
KD +++GF F+ Y H A E + QK+ + K + +
Sbjct: 277 KD--QDGKSKGFGFVNYEEHKSAVDAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYE 334
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
E + Q L++KNL I ++L+E F G IT + G+ + +GFV
Sbjct: 335 AIRLEKLSKYQGVNLFIKNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGKSKG-FGFVC 393
Query: 342 FAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGM 401
F+ A KA+ + I+G+ L +LA+ + +++ Q A N
Sbjct: 394 FSTPEEATKAITEMNQRMINGKPLYVALAQRKDVRRSQ--LEQQIQARNQMR-------- 443
Query: 402 VGGAYGALGAGYVPAGFAQPMVYGRGAA--PGGMA-MLPMLLPDGRIGYVLQQPGVQQHN 458
A AG P F PM YG+ PGG P P+ ++ QPG Q
Sbjct: 444 ---MQNAAAAGGFPGQFMPPMYYGQQGFFPPGGRGNAAPFPGPNPQMMMRRGQPG--QPF 498
Query: 459 PPPQPRSGRGG 469
P PR G G
Sbjct: 499 PEQWPRPGPNG 509
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 13/138 (9%)
Query: 71 EEEEETEDVVDG-----IDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPP----HGSE 121
EE + D V+ I+ QK Y G + K ++ +E KK E + L G
Sbjct: 292 EEHKSAVDAVEALNDKEINGQKIYVGRAQKK---RERTEELKKQYEAIRLEKLSKYQGVN 348
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L K G +T ++M D+G++KG+ FV F T E A++AI E+
Sbjct: 349 LFIKNLDDQIDSEKLEEEFKPFGTITSAKVMV-DDAGKSKGFGFVCFSTPEEATKAITEM 407
Query: 182 NSCELKGKKIKCSAAQAK 199
N + GK + + AQ K
Sbjct: 408 NQRMINGKPLYVALAQRK 425
>gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|113623484|dbj|BAF23429.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|215694402|dbj|BAG89395.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644698|dbj|BAI39945.1| putative poly(A)-binding protein [Oryza sativa Indica Group]
Length = 660
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 120/257 (46%), Gaps = 22/257 (8%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
+ +Y+G + D L +G V VR+ + ++ + GYA+V F + A++A
Sbjct: 37 QATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARA 96
Query: 178 IEELNSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
+E LN + GK I+ S +FI N+ ++ + + G ++S
Sbjct: 97 LEMLNFTPINGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFG-NILS 155
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN----APTVSWADPRNA 285
++ + + +++G+ F+++ A+ + K++ L+D P V + N
Sbjct: 156 CKVATE--MSGESKGYGFVQFELEEAAQNAISKLNG--MLLNDKKVYVGPFVRKQERENV 211
Query: 286 ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAE 344
S + +YVKNL + T+D LKE+F G IT VV+ + G +SR +GFV+F
Sbjct: 212 --SGNPKFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVV--MREGDGKSRCFGFVNFEN 267
Query: 345 RSSAMKALKNTEKYEID 361
A +A+++ + D
Sbjct: 268 PDDAARAVEDLNGKKFD 284
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 98/415 (23%), Positives = 167/415 (40%), Gaps = 63/415 (15%)
Query: 95 MKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG 154
+++ S++D +K + +++ + + L G + ++
Sbjct: 110 IRIMYSNRDPSSRKSG--------AANIFIKNLDKSIDNKALYDTFSVFGNILSCKVAT- 160
Query: 155 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI------------KCSAAQAKHRL 202
+ SGE+KGY FV F +E A AI +LN L KK+ S + +
Sbjct: 161 EMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNPKFNNV 220
Query: 203 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 262
++ N+ + ED++++ K GP + S+ ++++ ++R F F+ + N A + +
Sbjct: 221 YVKNLSESTTEDNLKEIFGKFGP-ITSVVVMRE--GDGKSRCFGFVNFENPDDAARAVED 277
Query: 263 MSNPKFKLDDNAPTVSWADPRN--------------AESSAASQVKALYVKNLPKDITQD 308
++ KF DD V A ++ E++ +Q LY+KNL I D
Sbjct: 278 LNGKKF--DDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDD 335
Query: 309 -RLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367
+LKE+FA G IT + G + GFV F A +AL I + L
Sbjct: 336 EKLKEIFADFGTITSCKVMRDLNGVSKGS-GFVAFKSAEDASRALVAMNGKMIGSKPLYV 394
Query: 368 SLAKPQADQKTSGGSNSQKSALNP-TYPPHLGYGM------VGGAYGALGAGYVPAGFAQ 420
+LA+ + +++ +Q S + P PP + M V G L G P F
Sbjct: 395 ALAQRKEERRAR--LQAQFSQMRPMVMPPSVAPRMPMYPPGVPGVGQQLFYGQPPPAFVN 452
Query: 421 PMVYGRGAAPGGMAMLPMLLPDGR--IGYV--LQQPGVQQHNPPPQPRSGRGGAG 471
P G L+P R +G + P VQQ P +P R G G
Sbjct: 453 PQ--------PGFGFQQHLIPGMRPSVGPIPNFVMPMVQQGQQPQRPAGRRAGTG 499
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 129/272 (47%), Gaps = 17/272 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + +Y+G + + +++ L + ++ +R+ + + + GYA+V F + AS
Sbjct: 31 PFANASLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDAS 90
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
A+E LN L GK I+ +Q +FI N+ + + G V
Sbjct: 91 NAMELLNFTPLNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGT-V 149
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--A 285
+S ++ D ++ Q++G+ F+++ N A+ + ++++ ++D V R
Sbjct: 150 LSCKVALD--SSGQSKGYGFVQFDNEEAAQNAIKRLNG--MLINDKQVYVGLFIRRQERE 205
Query: 286 ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAER 345
+++ + + +YVKNL + T + LK+LF +G IT + G+ R +GFV+F
Sbjct: 206 QTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRC-FGFVNFQNP 264
Query: 346 SSAMKALKNTEKYEIDG-QVLDCSLAKPQADQ 376
SA A++ I+ +VL A+ +A++
Sbjct: 265 DSAAAAVERLNGTTINNDRVLYVGRAQRKAER 296
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/363 (21%), Positives = 148/363 (40%), Gaps = 57/363 (15%)
Query: 40 DHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGIDAQKHYDGDEEM---- 95
D E V EE Y+ + ++ ++ + V+ +AQ + E +
Sbjct: 41 DLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELLNFTP 100
Query: 96 ------KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEV 149
++ S +D +K HG+ V++ + + L + G V
Sbjct: 101 LNGKPIRIMFSQRDPSIRKSG-------HGN-VFIKNLDTSIDNKALHDTFAAFGTVLSC 152
Query: 150 RIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI------------KCSAAQ 197
++ SG++KGY FV F +E A AI+ LN + K++ + + +
Sbjct: 153 KVAL-DSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTNGSP 211
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+++ N+ + ++D++K G + S ++KD ++R F F+ + N A
Sbjct: 212 KFTNVYVKNLSETYTDEDLKKLFGPYGT-ITSATVMKDVNG--KSRCFGFVNFQNPDSAA 268
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKA---------------LYVKNLP 302
+ ++++ +D V A R AE A + K LY+KNL
Sbjct: 269 AAVERLNGTTIN-NDRVLYVGRAQ-RKAEREAELKAKIEQERISRYEKLQGANLYLKNLD 326
Query: 303 KDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 362
+ ++LK+LF+ G IT + G+ + GFV F+ A KAL E++G
Sbjct: 327 DSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGS-GFVSFSTPEEASKALN-----EMNG 380
Query: 363 QVL 365
+++
Sbjct: 381 KLI 383
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G+ +YL + SD+ L+ G +T ++M + G +KG FV+F T E AS+A
Sbjct: 316 QGANLYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSN-GRSKGSGFVSFSTPEEASKA 374
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 375 LNEMNGKLIGRKPLYVAVAQRK 396
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 122/256 (47%), Gaps = 24/256 (9%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + +D L +G+V VR+ + S + GY +V + + A++A+E
Sbjct: 25 TSLYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALE 84
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
LN L G I+ + HR +FI N+ + + + G ++
Sbjct: 85 MLNFTPLNGSPIRVMYS---HRDPTIRKSGAGNIFIKNLDKAIDHKALHDTFSAFG-NIL 140
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ DP + Q++G+ F+++ + A+ + +K++ L+D V + +
Sbjct: 141 SCKVATDP--SGQSKGYGFVQFDSEEAAQKAIEKLNG--MLLNDKQVYVGPFLRKQERDT 196
Query: 289 AASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAER 345
A +++ ++VKNL + T++ L + F G IT +V+ + G +S+ +GFV+F
Sbjct: 197 ATDKMRFNNVFVKNLSETTTEEDLNKTFGEFGTITSIVV--MRDGDGKSKCFGFVNFENA 254
Query: 346 SSAMKALKNTEKYEID 361
A KA++ +ID
Sbjct: 255 EDAAKAVEALNGKKID 270
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 148/358 (41%), Gaps = 59/358 (16%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
I H A D F G + ++ SG++KGY FV F ++E A +AIE+LN L
Sbjct: 124 IDHKALHDTFSAF----GNILSCKVAT-DPSGQSKGYGFVQFDSEEAAQKAIEKLNGMLL 178
Query: 187 KGKKIKCS---------AAQAKHRL---FIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
K++ A K R F+ N+ E+D+ K + G + SI +++
Sbjct: 179 NDKQVYVGPFLRKQERDTATDKMRFNNVFVKNLSETTTEEDLNKTFGEFGT-ITSIVVMR 237
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR----------- 283
D +++ F F+ + N A + + ++ K +DD V A +
Sbjct: 238 D--GDGKSKCFGFVNFENAEDAAKAVEALNGKK--IDDKEWFVGKAQKKYEREVELKQRF 293
Query: 284 ---NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFV 340
E++ Q LY+KNL I ++LKELF+ G IT + G R GFV
Sbjct: 294 EQSMKEAADKFQGANLYIKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGISRGS-GFV 352
Query: 341 HFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT---SGGSNSQKSALNPT----- 392
F+ A +AL + + L +LA+ + D++ + S + A+ P+
Sbjct: 353 AFSTPEEASRALLEMNGKIVVSKPLYVALAQRKEDRRARLQAQFSQMRPVAMAPSVGPRM 412
Query: 393 --YPP-------HLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLP 441
YPP + YG A G+ G+ Q +V G PGG M +P
Sbjct: 413 PMYPPAGPGLGQQIFYGQAPPAIIPPQPGF---GYQQQLV--PGMRPGGAPMPNFFVP 465
>gi|313232178|emb|CBY09289.1| unnamed protein product [Oikopleura dioica]
Length = 611
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 115/252 (45%), Gaps = 37/252 (14%)
Query: 157 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK--------------HRL 202
+GE+KGY FV F T+E A +AIE+L+ + KK+ +++ +
Sbjct: 120 AGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVREYGDRAKQFTNV 179
Query: 203 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 262
FI N+P W + + + + G V+S+ L D ++R F F+ + H CAE +K
Sbjct: 180 FIKNLPAEWDDAKLTEVFGEHG-SVMSVALATDEN--GKSRQFGFVSFETHECAEKVVEK 236
Query: 263 MSNPKFKLDDNAPTVSWADPRNAESSAASQVKA---------------LYVKNLPKDITQ 307
+ + +F + V A + AE A +VK LYVKNL IT
Sbjct: 237 LHDKEF--EGKKIFVGRAQ-KKAERQAELKVKFEKLKHERNQRYQGVNLYVKNLDDSITD 293
Query: 308 DRLKELFAHHGKIT--KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
D L+E FA +G IT KV+ G +GFV F A KA+ I + L
Sbjct: 294 DILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIASKPL 353
Query: 366 DCSLAKPQADQK 377
+LA+ + ++K
Sbjct: 354 YVALAQRKDERK 365
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 114/263 (43%), Gaps = 19/263 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + +A++ L G V +R+ + + + GYA+V F+ E A +AI+
Sbjct: 11 ASLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAID 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN- 238
+N +L + ++A + + W K T +I K N
Sbjct: 71 TMNFIQL---SVNLASAISSS--------KTWTRLSTTKCCTIPFSAFGNILSCKVNVNL 119
Query: 239 ANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE----SSAASQVK 294
A +++G+ F+ + A + +K+ ++D V R A Q
Sbjct: 120 AGESKGYGFVHFETEEAAVKAIEKLDG--MLMNDKKVFVGRFKSRGERVREYGDRAKQFT 177
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
+++KNLP + +L E+F HG + V + + G+ R ++GFV F A K ++
Sbjct: 178 NVFIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSR-QFGFVSFETHECAEKVVEK 236
Query: 355 TEKYEIDGQVLDCSLAKPQADQK 377
E +G+ + A+ +A+++
Sbjct: 237 LHDKEFEGKKIFVGRAQKKAERQ 259
>gi|407038416|gb|EKE39116.1| RNA-binding protein TIA-1, putative [Entamoeba nuttalli P19]
Length = 306
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 121/279 (43%), Gaps = 31/279 (11%)
Query: 113 LALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE 172
L + + V++ GI + L +G V +IM+ K SG GY FV F
Sbjct: 36 LPINANSKSVHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDK-SGVHAGYGFVEFVDST 94
Query: 173 LASQAIEELNSCELKGKKIKCSAA-------QAKHRLFIGNVPRNWGEDDMRKAVTKIGP 225
A A + ++ + G+++K + + Q +++F+G + +D + K K G
Sbjct: 95 TARFAKDNMDGRVVYGRELKVNWSYTAQQENQGNYKIFVGGLQPEVNDDLLYKTFQKFGR 154
Query: 226 GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA 285
V ++K Q +++G+ F+ + AE + Q M+ K L+ V+W A
Sbjct: 155 -VTDARVLKFTQTG-KSKGYGFVTFIRKEDAETAMQMMNGEK--LEGRNIKVNWVTSNIA 210
Query: 286 ESS-------------AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 332
+ +SQ +Y+ N+PK++ D LK+L A +G I +V + K
Sbjct: 211 SKTEQPKRSYDEINNETSSQNCTVYIGNIPKNVESDDLKQLLAEYGSIEEVRLNKDKG-- 268
Query: 333 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
Y F+ F++ SA A+ I+G L CS +
Sbjct: 269 ----YAFIKFSKHESATSAILMCNGKIINGSTLRCSWGR 303
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
VY+G IP + DDL+ G + EVR+ K K GYAF+ F E A+ AI
Sbjct: 234 VYIGNIPKNVESDDLKQLLAEYGSIEEVRLNKDK------GYAFIKFSKHESATSAILMC 287
Query: 182 NSCELKGKKIKCSAAQAKH 200
N + G ++CS + H
Sbjct: 288 NGKIINGSTLRCSWGRESH 306
Score = 38.5 bits (88), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 68/153 (44%), Gaps = 9/153 (5%)
Query: 227 VISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE 286
V+S ++++D + G+ F+E+ + A +++ M + V+W+ E
Sbjct: 69 VVSCKIMRDKSGVHA--GYGFVEFVDSTTARFAKDNMDGRV--VYGRELKVNWSYTAQQE 124
Query: 287 SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKV-VIPPAKPGQERSRYGFVHFAER 345
+ ++ +V L ++ D L + F G++T V+ + G+ + YGFV F +
Sbjct: 125 NQGNYKI---FVGGLQPEVNDDLLYKTFQKFGRVTDARVLKFTQTGKSKG-YGFVTFIRK 180
Query: 346 SSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A A++ +++G+ + + KT
Sbjct: 181 EDAETAMQMMNGEKLEGRNIKVNWVTSNIASKT 213
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 117/261 (44%), Gaps = 18/261 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
P+ + +Y+G + ++ L SIG+V +R+ + + + GYA+V + + +
Sbjct: 50 PNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGER 109
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+EELN +KGK + +Q +FI N+ + G ++
Sbjct: 110 ALEELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFG-NIL 168
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D + +RG+ F+ Y A + + ++ L++ V P+ S
Sbjct: 169 SCKVAQD--ESGGSRGYGFVHYETAEAANAAIKSVNG--MLLNEKKVFVGHHIPKKDRMS 224
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +YVKN+ + T D +ELF +G+IT + + G+ R +GFV++
Sbjct: 225 KFEEMKANFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQEGKVRG-FGFVNYIR 283
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
A KA+ + Q L
Sbjct: 284 HEDANKAVDELNDIDFKSQKL 304
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 101/236 (42%), Gaps = 35/236 (14%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
HG+ +++ + + L + G + ++ + +SG ++GY FV + T E A+ A
Sbjct: 140 HGN-IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ-DESGGSRGYGFVHYETAEAANAA 197
Query: 178 IEELNSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKI 223
I+ +N L KK+ K +A +++ N+ +D+ R+ K
Sbjct: 198 IKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDTETTDDEFRELFEKY 257
Query: 224 GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 283
G + S L +D + + RGF F+ Y H A + ++++ FK V A +
Sbjct: 258 GE-ITSASLARDQEG--KVRGFGFVNYIRHEDANKAVDELNDIDFK--SQKLYVGRAQKK 312
Query: 284 N--------------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
+ E SA LYVKNL DI + L+++F +G IT +
Sbjct: 313 HEREEELRRQYEAQRQEKSAKYMGVNLYVKNLADDIDDEELRKVFEAYGSITSAKV 368
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 29/164 (17%)
Query: 102 KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAK 161
K D K E+ A + + +Y+ I + +DD+ R + GE+T + + ++ G+ +
Sbjct: 219 KKDRMSKFEEMKA---NFTNIYVKNIDTETTDDEFRELFEKYGEITSASLARDQE-GKVR 274
Query: 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------------- 200
G+ FV + E A++A++ELN + K +K+ AQ KH
Sbjct: 275 GFGFVNYIRHEDANKAVDELNDIDFKSQKLYVGRAQKKHEREEELRRQYEAQRQEKSAKY 334
Query: 201 ---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQ 241
L++ N+ + ++++RK G + S ++++D A+Q
Sbjct: 335 MGVNLYVKNLADDIDDEELRKVFEAYG-SITSAKVMRDTTPADQ 377
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 273 NAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 332
+APT++ A P NA ++AS LYV L +T+ L ELF+ G++ + + +
Sbjct: 36 DAPTLTSAAPANANPNSAS----LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTR 91
Query: 333 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375
Y +V++ + +AL+ I G+ C + Q D
Sbjct: 92 RSLGYAYVNYNSANDGERALEELNYTLIKGK--PCRIMWSQRD 132
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 137/309 (44%), Gaps = 42/309 (13%)
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK-- 199
+ G++ ++ + G +KGY FV F + A +AI+ +N E++GK + Q +
Sbjct: 134 AFGKILSCKVATDAN-GVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRAD 192
Query: 200 --------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYY 251
+F+ N+P G+D++ K T+ G V S ++KD + ++ +GF FI +
Sbjct: 193 RPQGKDVYTNVFVKNLPAELGDDELSKMATEFGE-VTSAVVMKDEKGSS--KGFGFINFK 249
Query: 252 NHACAEYSRQKMSNPKF------------KLDDNAPTVSWADPRNAESSAASQVKALYVK 299
+ CA + +++ + K + A + E Q LYVK
Sbjct: 250 DAECAAKCVEALNDKEIGGKVLYAGRAQKKTEREAMLRQKVEESKQERYLKYQGMNLYVK 309
Query: 300 NLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYE 359
NL ++ D L++LF G IT + G+ + +GFV F A +A+
Sbjct: 310 NLADEVDDDALRDLFTSCGTITSCKVMKDTSGKSKG-FGFVCFTSHDEATRAVTEMNGKM 368
Query: 360 IDGQVLDCSLAKPQADQKTSGGSNSQK----SALNPTYPPHLGYGMVGGAYG-------A 408
+ G+ L +LA+ + ++ +N Q A+ T PP+ GM G YG A
Sbjct: 369 VKGKPLYVALAQRKDVRRAQLEANVQNRLGMGAM--TRPPNPMTGM--GPYGPGAMPFFA 424
Query: 409 LGAGYVPAG 417
G G +PAG
Sbjct: 425 AGPGGMPAG 433
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 122/266 (45%), Gaps = 27/266 (10%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTK---E 172
P S +Y+G + D ++ L S+G V +R+ + + + GYA+V + + +
Sbjct: 17 PLTNSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQ 76
Query: 173 LASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVT 221
A +A+E LN L GK ++ + HR +FI N+ ++ + +
Sbjct: 77 AAERAMETLNYHVLNGKPMRIMWS---HRDPSARKSGVGNIFIKNLDKSIDAKALHDTFS 133
Query: 222 KIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSW 279
G ++S ++ D ++G+ F+ + + A A+ + Q ++ + K+ P
Sbjct: 134 AFGK-ILSCKVATDANGV--SKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKR 190
Query: 280 ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
AD + + ++VKNLP ++ D L ++ G++T V+ + G + +GF
Sbjct: 191 ADRPQGKDVYTN----VFVKNLPAELGDDELSKMATEFGEVTSAVVMKDEKGSSKG-FGF 245
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVL 365
++F + A K ++ EI G+VL
Sbjct: 246 INFKDAECAAKCVEALNDKEIGGKVL 271
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + + DD LR S G +T ++MK SG++KG+ FV F + + A++A
Sbjct: 302 QGMNLYVKNLADEVDDDALRDLFTSCGTITSCKVMK-DTSGKSKGFGFVCFTSHDEATRA 360
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N +KGK + + AQ K
Sbjct: 361 VTEMNGKMVKGKPLYVALAQRK 382
>gi|67465872|ref|XP_649094.1| RNA-binding protein TIA-1 [Entamoeba histolytica HM-1:IMSS]
gi|56465456|gb|EAL43711.1| RNA-binding protein TIA-1, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449705857|gb|EMD45818.1| RNA-binding protein TIA-1, putative [Entamoeba histolytica KU27]
Length = 306
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 121/279 (43%), Gaps = 31/279 (11%)
Query: 113 LALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE 172
L + + V++ GI + L +G V +IM+ K SG GY FV F
Sbjct: 36 LPINANSKSVHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDK-SGVHAGYGFVEFVDST 94
Query: 173 LASQAIEELNSCELKGKKIKCSAA-------QAKHRLFIGNVPRNWGEDDMRKAVTKIGP 225
A A + ++ + G+++K + + Q +++F+G + +D + K K G
Sbjct: 95 TARFAKDNMDGRVVYGRELKVNWSYTAQQENQGNYKIFVGGLQPEVNDDLLYKTFQKFGR 154
Query: 226 GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA 285
V ++K Q +++G+ F+ + AE + Q M+ K L+ V+W A
Sbjct: 155 -VTDARVLKFTQTG-KSKGYGFVTFIRKEDAETAMQMMNGEK--LEGRNIKVNWVTSNIA 210
Query: 286 ESS-------------AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ 332
+ +SQ +Y+ N+PK++ D LK+L A +G I +V + K
Sbjct: 211 SKTEQPKRSYDEINNETSSQNCTVYIGNIPKNVESDDLKQLLAEYGSIEEVRLNKDKG-- 268
Query: 333 ERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
Y F+ F++ SA A+ I+G L CS +
Sbjct: 269 ----YAFIKFSKHESATSAILMCNGKIINGSTLRCSWGR 303
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
VY+G IP + DDL+ G + EVR+ K K GYAF+ F E A+ AI
Sbjct: 234 VYIGNIPKNVESDDLKQLLAEYGSIEEVRLNKDK------GYAFIKFSKHESATSAILMC 287
Query: 182 NSCELKGKKIKCSAAQAKH 200
N + G ++CS + H
Sbjct: 288 NGKIINGSTLRCSWGRESH 306
Score = 38.5 bits (88), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 68/153 (44%), Gaps = 9/153 (5%)
Query: 227 VISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE 286
V+S ++++D + G+ F+E+ + A +++ M + V+W+ E
Sbjct: 69 VVSCKIMRDKSGVHA--GYGFVEFVDSTTARFAKDNMDGRV--VYGRELKVNWSYTAQQE 124
Query: 287 SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKV-VIPPAKPGQERSRYGFVHFAER 345
+ ++ +V L ++ D L + F G++T V+ + G+ + YGFV F +
Sbjct: 125 NQGNYKI---FVGGLQPEVNDDLLYKTFQKFGRVTDARVLKFTQTGKSKG-YGFVTFIRK 180
Query: 346 SSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A A++ +++G+ + + KT
Sbjct: 181 EDAETAMQMMNGEKLEGRNIKVNWVTSNIASKT 213
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 129/272 (47%), Gaps = 17/272 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + +Y+G + + +++ L + ++ +R+ + + + GYA+V F + AS
Sbjct: 31 PFANASLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDAS 90
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
A+E LN L GK I+ +Q +FI N+ + + G V
Sbjct: 91 NAMELLNFTPLNGKPIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGT-V 149
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--A 285
+S ++ D ++ Q++G+ F+++ N A+ + ++++ ++D V R
Sbjct: 150 LSCKVALD--SSGQSKGYGFVQFDNEEAAQNAIKRLNG--MLINDKQVYVGLFIRRQERE 205
Query: 286 ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAER 345
+++ + + +YVKNL + T + LK+LF +G IT + G+ R +GFV+F
Sbjct: 206 QTNGSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRC-FGFVNFQNP 264
Query: 346 SSAMKALKNTEKYEIDG-QVLDCSLAKPQADQ 376
SA A++ I+ +VL A+ +A++
Sbjct: 265 DSAAAAVERLNGTTINNDRVLYVGRAQRKAER 296
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 77/363 (21%), Positives = 148/363 (40%), Gaps = 57/363 (15%)
Query: 40 DHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGIDAQKHYDGDEEM---- 95
D E V EE Y+ + ++ ++ + V+ +AQ + E +
Sbjct: 41 DLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMELLNFTP 100
Query: 96 ------KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEV 149
++ S +D +K HG+ V++ + + L + G V
Sbjct: 101 LNGKPIRIMFSQRDPSIRKSG-------HGN-VFIKNLDTSIDNKALHDTFAAFGTVLSC 152
Query: 150 RIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI------------KCSAAQ 197
++ SG++KGY FV F +E A AI+ LN + K++ + + +
Sbjct: 153 KVAL-DSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQEREQTNGSP 211
Query: 198 AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAE 257
+++ N+ + ++D++K G + S ++KD ++R F F+ + N A
Sbjct: 212 KFTNVYVKNLSETYTDEDLKKLFGPYGT-ITSATVMKDVNG--KSRCFGFVNFQNPDSAA 268
Query: 258 YSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKA---------------LYVKNLP 302
+ ++++ +D V A R AE A + K LY+KNL
Sbjct: 269 AAVERLNGTTIN-NDRVLYVGRAQ-RKAEREAELKAKIEQERISRYEKLQGANLYLKNLD 326
Query: 303 KDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDG 362
+ ++LK+LF+ G IT + G+ + GFV F+ A KAL E++G
Sbjct: 327 DSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGS-GFVSFSTPEEASKALN-----EMNG 380
Query: 363 QVL 365
+++
Sbjct: 381 KLI 383
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G+ +YL + SD+ L+ G +T ++M + G +KG FV+F T E AS+A
Sbjct: 316 QGANLYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSN-GRSKGSGFVSFSTPEEASKA 374
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 375 LNEMNGKLIGRKPLYVAVAQRK 396
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 118/261 (45%), Gaps = 18/261 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
P+ + +Y+G + ++ L SIG+V +R+ + + + GYA+V + + +
Sbjct: 53 PNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGER 112
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+EELN +KGK + +Q + +FI N+ + G ++
Sbjct: 113 ALEELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFG-NIL 171
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ +Y A A S K N L++ V P+ S
Sbjct: 172 SCKVAQDEH--GNSKGYGFV-HYETAEAANSAIKSVNGML-LNEKKVFVGHHIPKKDRMS 227
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +YVKN+ + T D + LF +G IT + + G+ R +GFV++
Sbjct: 228 KFEEMKANFTNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQEGKSRG-FGFVNYIR 286
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
A KA++ + GQ L
Sbjct: 287 HEDANKAVEELNNSDFKGQAL 307
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 38/229 (16%)
Query: 125 GGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSC 184
G I + A D F G + ++ + + G +KGY FV + T E A+ AI+ +N
Sbjct: 153 GAIDNKALHDTFAAF----GNILSCKVAQ-DEHGNSKGYGFVHYETAEAANSAIKSVNGM 207
Query: 185 ELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISI 230
L KK+ K +A +++ N+ +D+ R K G + S
Sbjct: 208 LLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDPEATDDEFRALFEKYGD-ITSA 266
Query: 231 ELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN------ 284
L D + ++RGF F+ Y H A + ++++N FK A V A ++
Sbjct: 267 SLAHDQEG--KSRGFGFVNYIRHEDANKAVEELNNSDFK--GQALYVGRAQKKHEREEEL 322
Query: 285 --------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E SA Q LYVKNL +I D L+++F +G IT +
Sbjct: 323 RKQYEAQRQEKSAKYQGVNLYVKNLADEIDDDELRKIFEPYGAITSAKV 371
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 29/158 (18%)
Query: 102 KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAK 161
K D K E+ A + + +Y+ I +A+DD+ R + G++T + ++ G+++
Sbjct: 222 KKDRMSKFEEMKA---NFTNIYVKNIDPEATDDEFRALFEKYGDITSASLAHDQE-GKSR 277
Query: 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------------- 200
G+ FV + E A++A+EELN+ + KG+ + AQ KH
Sbjct: 278 GFGFVNYIRHEDANKAVEELNNSDFKGQALYVGRAQKKHEREEELRKQYEAQRQEKSAKY 337
Query: 201 ---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L++ N+ +D++RK G + S ++++D
Sbjct: 338 QGVNLYVKNLADEIDDDELRKIFEPYG-AITSAKVMRD 374
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 117/261 (44%), Gaps = 18/261 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 48 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 107
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KGK + +Q + +FI N+ + G ++
Sbjct: 108 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 166
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L+D V + S
Sbjct: 167 SCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDKKVFVGHHISKKDRQS 222
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +Y+KN+ D+T++ +++F G+IT + G+ R +GFV+++
Sbjct: 223 KFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRG-FGFVNYST 281
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
SA A+ E+ Q L
Sbjct: 282 HESAQAAVDEMHDKEVKTQKL 302
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 101/232 (43%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 141 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 199
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ +K ++I N+ + E++ RK + G +
Sbjct: 200 NGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGE-I 258
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +DP+ ++RGF F+ Y H A+ + +M + + K V A ++
Sbjct: 259 TSATLSRDPEG--KSRGFGFVNYSTHESAQAAVDEMHDKEVKTQK--LYVGRAQKKHERE 314
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL D+ ++L+ELF +G IT +
Sbjct: 315 EELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKV 366
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 9/122 (7%)
Query: 84 DAQKHYDG----DEEMKVAES-DKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRH 138
+A KH +G D+++ V K D + K E+ A + + +Y+ I D ++++ R
Sbjct: 194 NAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKA---NFTNIYIKNIDPDVTEEEFRK 250
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
+ GE+T + + + G+++G+ FV + T E A A++E++ E+K +K+ AQ
Sbjct: 251 IFEQFGEITSATLSRDPE-GKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQK 309
Query: 199 KH 200
KH
Sbjct: 310 KH 311
>gi|348523081|ref|XP_003449052.1| PREDICTED: nucleolin-like isoform 2 [Oreochromis niloticus]
Length = 706
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 136/300 (45%), Gaps = 42/300 (14%)
Query: 93 EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIM 152
E+ + E +D +K+K A L ++ +P A+ DDL+ K + E+R+
Sbjct: 357 EKARSKEGSQDSKKEKDARTL---------FVKNLPFSATADDLKEIFK---DAVEIRVP 404
Query: 153 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI-----------------KCSA 195
G+++ KG A+V F+T+ A + +EE E++G+ I K
Sbjct: 405 PGQNTSN-KGIAYVEFKTEADAERTMEETQGSEVQGRSIIIDYTGEKSHMGARASGKLEI 463
Query: 196 AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHAC 255
A L + N+ N E+ ++ K +SI + PQ + +GFAF+E+ +
Sbjct: 464 FSASKTLVVNNLSFNATEEVLQSTFEK----AVSIRI---PQRDGRPKGFAFLEFESTDD 516
Query: 256 AEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFA 315
A+ + + +N + ++ + + ++ R+ + K L+VK L +D T++ LK+ F
Sbjct: 517 AKDALENFNNTE--IEGRSIRLEYSQSRDWNRGNSGPTKTLFVKGLSEDTTEETLKDAF- 573
Query: 316 HHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375
G + ++ G + +GFV F+ A + E EIDG + AKP+ +
Sbjct: 574 -EGAVAARIVTDRDTGSSKG-FGFVDFSNEDDCKAAKEAMEDGEIDGSKVTLDYAKPKGE 631
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 117/266 (43%), Gaps = 40/266 (15%)
Query: 122 VYLGGIPHDASDDDLR-----HFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
+++G + D+++ F K+ E+T+VR+ G K + +V F ++E +
Sbjct: 287 LFVGNLNSSKDFDEIKASLRKFFSKNGLEITDVRL------GGNKKFGYVDFASEEDLQK 340
Query: 177 AIEELNSCELKGKKIKCSAAQAK------------HRLFIGNVPRNWGEDDMRKAVTKIG 224
+ ELN ++ G+++K A++K LF+ N+P + DD+++
Sbjct: 341 GL-ELNGKKVMGQEVKLEKARSKEGSQDSKKEKDARTLFVKNLPFSATADDLKEIFKD-- 397
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK-----LDDNAPTVSW 279
++E+ P N+G A++E+ A AE + ++ + + +D
Sbjct: 398 ----AVEIRVPPGQNTSNKGIAYVEFKTEADAERTMEETQGSEVQGRSIIIDYTGEKSHM 453
Query: 280 ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
+ + S K L V NL + T++ L+ F K + IP + G+ + + F
Sbjct: 454 GARASGKLEIFSASKTLVVNNLSFNATEEVLQSTFE---KAVSIRIPQ-RDGRPKG-FAF 508
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVL 365
+ F A AL+N EI+G+ +
Sbjct: 509 LEFESTDDAKDALENFNNTEIEGRSI 534
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 38/195 (19%)
Query: 202 LFIGNVPRNWGEDD----MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN----H 253
LF+GN+ + D+ +RK +K G + + L N+ F ++++ +
Sbjct: 287 LFVGNLNSSKDFDEIKASLRKFFSKNGLEITDVRL-------GGNKKFGYVDFASEEDLQ 339
Query: 254 ACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQ----VKALYVKNLPKDITQDR 309
E + +K+ + KL+ R+ E S S+ + L+VKNLP T D
Sbjct: 340 KGLELNGKKVMGQEVKLEK---------ARSKEGSQDSKKEKDARTLFVKNLPFSATADD 390
Query: 310 LKELFAHHGKITKVVIPPAKPGQERSRYG--FVHFAERSSAMKALKNTEKYEIDGQ--VL 365
LKE+F ++ +P PGQ S G +V F + A + ++ T+ E+ G+ ++
Sbjct: 391 LKEIFKDA---VEIRVP---PGQNTSNKGIAYVEFKTEADAERTMEETQGSEVQGRSIII 444
Query: 366 DCSLAKPQADQKTSG 380
D + K + SG
Sbjct: 445 DYTGEKSHMGARASG 459
>gi|449469386|ref|XP_004152401.1| PREDICTED: polyadenylate-binding protein RBP47B'-like [Cucumis
sativus]
Length = 422
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 82/349 (23%), Positives = 154/349 (44%), Gaps = 57/349 (16%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++G + + + L GEV ++I++ K +G+ +GY FV F + A + ++
Sbjct: 22 LWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQTY 81
Query: 182 NSCELKGK----KIKCSA---------AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
N ++ G ++ ++ A +H +F+G++ + + +++ P V
Sbjct: 82 NGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVR 141
Query: 229 SIELVKDPQNANQNRGFAFIEYY-----NHACAEYSRQKMSNPKFKLDDNAP--TVSWAD 281
++V DP N +++G+ F+++ N A +E + S ++ P T+
Sbjct: 142 GAKVVTDP-NTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRISAATPKKTIGVQQ 200
Query: 282 ---------PRNAESSAASQVKA--------LYVKNLPKDITQDRLKELFAHHGKITKVV 324
P A +++ + A ++V NL +IT++ LK+ F G+I V
Sbjct: 201 QYSLGKAMYPVPAYTTSVPVLPADYDANNTTIFVGNLDPNITEEELKQTFLQFGEIAYVK 260
Query: 325 IPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK-PQADQKTSGGSN 383
IP K GFV F R+SA +A++ + I QV+ S + P A Q +
Sbjct: 261 IPAGKGC------GFVQFGTRASAEEAIQKMQGKIIGQQVVRTSWGRNPAAKQDLT---- 310
Query: 384 SQKSALNPT-YPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPG 431
+ ++P + + GY GG Y A G G V P +YG GA G
Sbjct: 311 TWGQQVDPNQWSAYYGY---GGTYDAYGYGVV----QDPSLYGYGAYSG 352
>gi|90399074|emb|CAJ86296.1| H0124B04.13 [Oryza sativa Indica Group]
Length = 913
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 128/277 (46%), Gaps = 46/277 (16%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+++Y+ + + D L H GEVT ++ K +G +KGY FV + + A++A+
Sbjct: 304 AKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVI 363
Query: 180 ELNSCELKGKKIKC-----------SAAQA-----------KHRLFIGNVPRNWGEDDMR 217
LN + G+KI+ SA ++ L++ N+P + D +
Sbjct: 364 HLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRTVKEIDMSNLYVCNMPSSI---DTK 420
Query: 218 KAVTKIGP--GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK-------F 268
K V P + +V DP + +G+ FI++ + A + M+
Sbjct: 421 KLVELFLPFGKITHARVVADPDTFSA-KGYGFIKFTDSESATKAIAAMNGALVGGEMIIV 479
Query: 269 KLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPA 328
++ +P+ S + + + S+ LY+ NLP+ +T D++ LFA G+ITKV++
Sbjct: 480 RVAGLSPSASISAVQTTQDINKSR---LYITNLPRSMTADKMVNLFAPFGQITKVLM--- 533
Query: 329 KPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
Y V +A+ SA+KA+++ + Y ++G+ L
Sbjct: 534 -----NLEYSLVWYADAPSAIKAVQHMDGYMVEGKRL 565
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 117/292 (40%), Gaps = 40/292 (13%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+ +P L G++T R++ D+ AKGY F+ F E A++AI
Sbjct: 406 SNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIA 465
Query: 180 ELNSCELKGKKI-----------KCSAAQA-----KHRLFIGNVPRNWGEDDMRKAVTKI 223
+N + G+ I SA Q K RL+I N+PR+ D M V
Sbjct: 466 AMNGALVGGEMIIVRVAGLSPSASISAVQTTQDINKSRLYITNLPRSMTADKM---VNLF 522
Query: 224 GP-GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP 282
P G I+ L+ N ++ + Y + A + Q M + S
Sbjct: 523 APFGQITKVLM--------NLEYSLVWYADAPSAIKAVQHMDGYMVEGKRLVVKRSELCT 574
Query: 283 RNAESSAASQVK-----ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRY 337
NA + +K LYV +P +T+D+ +LF G++ + + RY
Sbjct: 575 TNASQAGGKPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARM------FRFQRY 628
Query: 338 GFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA-KPQADQKTSGGSNSQKSA 388
G V F S A A+ + + Y+I G +L +A P G SQ S+
Sbjct: 629 GMVRFDNPSCAAAAIDHLDGYQIGGSILAVRVAGLPAESNAAKGALTSQMSS 680
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 114/277 (41%), Gaps = 29/277 (10%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G +P L G++ R++ +G ++GY FV + AS+AI+
Sbjct: 209 TNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIK 268
Query: 180 ELNSCELKGKKIKCSAA---------------QAKHRLFIGNVPRNWGEDDMRKAVTKIG 224
+N ++G+ ++ A +L++ N+ + D + G
Sbjct: 269 RMNGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFG 328
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYN-HACAE---------YSRQKMSNPKFKLDDNA 274
V + ++ KD ++G+ F++Y + H AE +K+ +
Sbjct: 329 E-VTNAKVAKD-HTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTL 386
Query: 275 PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 334
P + P + + LYV N+P I +L ELF GKIT + A P
Sbjct: 387 PNSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARV-VADPDTFS 445
Query: 335 SR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370
++ YGF+ F + SA KA+ + G+++ +A
Sbjct: 446 AKGYGFIKFTDSESATKAIAAMNGALVGGEMIIVRVA 482
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 125/294 (42%), Gaps = 55/294 (18%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+ +P + D + + G++T+V +M + Y+ V + A +A++
Sbjct: 502 SRLYITNLPRSMTADKMVNLFAPFGQITKV-LMNLE-------YSLVWYADAPSAIKAVQ 553
Query: 180 ELNSCELKGKKI------KCS--AAQAKHR---------LFIGNVPRNWGEDDMRKAVTK 222
++ ++GK++ C+ A+QA + L++G VP + ED
Sbjct: 554 HMDGYMVEGKRLVVKRSELCTTNASQAGGKPIKEIDMANLYVGRVPSSLTEDQF------ 607
Query: 223 IGPGVISIELVKDPQNANQNRGFAF-----IEYYNHACAEYSRQKMSNPKFKLDDNAPTV 277
I+L + Q R F F + + N +CA + + + A V
Sbjct: 608 -------IDLFRPFGRVVQARMFRFQRYGMVRFDNPSCAAAAIDHLDGYQIGGSILAVRV 660
Query: 278 SW--ADPRNAESSAASQVKA----------LYVKNLPKDITQDRLKELFAHHGKITKVVI 325
+ A+ A+ + SQ+ + LYV +LP + +RL +LF G+IT+ +
Sbjct: 661 AGLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKV 720
Query: 326 PPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS 379
+ +GFV FA+ SA AL + Y +DG VL+ +A D +S
Sbjct: 721 VVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIAGVHPDAMSS 774
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 117/244 (47%), Gaps = 18/244 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + +D L G+V VR+ + + + GY +V + T + AS+A+
Sbjct: 39 TSLYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 98
Query: 180 ELNSCELKGKKIKCSAA--------QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
ELN L G+ I+ + +FI N+ ++ + + + GP ++S +
Sbjct: 99 ELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGP-ILSCK 157
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ DP + Q++G+ F++Y A+ + K++ L+D V + +
Sbjct: 158 VAVDP--SGQSKGYGFVQYDTDEAAQRAIDKLNG--MLLNDKQVYVGPFVHKLQRDPSGE 213
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSA 348
+VK +YVKNL + ++ + L ++F G T VI + G+ +S+ +GFV+F A
Sbjct: 214 KVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVI--MRDGEGKSKGFGFVNFENSDDA 271
Query: 349 MKAL 352
+A+
Sbjct: 272 ARAV 275
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 139/320 (43%), Gaps = 53/320 (16%)
Query: 157 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC-----------SAAQAKH-RLFI 204
SG++KGY FV + T E A +AI++LN L K++ S + K +++
Sbjct: 163 SGQSKGYGFVQYDTDEAAQRAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYV 222
Query: 205 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 264
N+ + ++++ K + G S +++D + +++GF F+ + N A + ++
Sbjct: 223 KNLSESLSDEELNKVFGEFGV-TTSCVIMRDGEG--KSKGFGFVNFENSDDAARAVDALN 279
Query: 265 NPKFKLDDNAPTVSWADPRN--------------AESSAASQVKALYVKNLPKDITQDRL 310
F DD V A ++ E++ SQ LYVKNL + +T D+L
Sbjct: 280 GKTF--DDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKL 337
Query: 311 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370
+E FA G IT + G R GFV F+ A +A+ I + L +LA
Sbjct: 338 REHFAPFGTITSCKVMRDPTGVSRGS-GFVAFSTPEEASRAITEMNGKMIVTKPLYVALA 396
Query: 371 KPQADQKTSGGSNSQKSALNPT-YPPHLGYGMVGGAYGALGAGYVPAG--FAQPMVYGRG 427
+ + D+K +Q S + P PP +G M Y P G Q + YG+G
Sbjct: 397 QRKEDRKAR--LQAQFSQMRPVNMPPAVGPRM---------QMYPPGGPPMGQQLFYGQG 445
Query: 428 AAPGGMAMLPMLLPDGRIGY 447
AM+P P GY
Sbjct: 446 PP----AMIP---PQPGFGY 458
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 125/269 (46%), Gaps = 19/269 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+G + + L + V VR+ + + + GYA+V F E AS+A++
Sbjct: 58 SSLYVGDLDPSVDEPQLLDLFNQVAPVQTVRVCRDL-TRRSLGYAYVNFANPEDASRAMD 116
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN ++ + I+ + K +FI N+ + + + + G ++S +
Sbjct: 117 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDPSIDNKALYETFSAFG-TILSCK 175
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSW----ADPRNAES 287
+ D +++G+ F+++ A+ + K++ L+D V D +ES
Sbjct: 176 VAMD--AVGRSKGYGFVQFEKEETAQAAIDKLNG--MLLNDKQVFVGHFVRRQDRSRSES 231
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A + +YVKNLPK+IT D LK+ F +G I+ V+ + G RS +GFV+F +
Sbjct: 232 GAVPRFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRS-FGFVNFESPEA 290
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
A A++ + VL A+ ++++
Sbjct: 291 AAVAVEKMNGISLGEDVLYVGRAQKKSER 319
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 144/349 (41%), Gaps = 69/349 (19%)
Query: 158 GEAKGYAFVTFRTKELASQAIEELNSCELKGKKI--------------KCSAAQAKHRLF 203
G +KGY FV F +E A AI++LN L K++ + A ++
Sbjct: 182 GRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRSRSESGAVPRFTNVY 241
Query: 204 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 263
+ N+P+ +D+++K K G IS +V Q+ N +R F F+ + + A + +KM
Sbjct: 242 VKNLPKEITDDELKKTFGKYGD--ISSAVVMKDQSGN-SRSFGFVNFESPEAAAVAVEKM 298
Query: 264 SNPKFKLDDNAPTVSWADP---------RNAESSAASQVKAL-----YVKNLPKDITQDR 309
+ L ++ V A R E S+ + L Y+KNL + ++
Sbjct: 299 NG--ISLGEDVLYVGRAQKKSEREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 356
Query: 310 LKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369
LKE+F+ +G +T + G R +GFV ++ A +AL I + L +
Sbjct: 357 LKEMFSEYGNVTSCKVMMNSQGLSRG-FGFVAYSSPEEASRALSEMNGKMIGRKPLYVAF 415
Query: 370 AKPQADQKT----------SGGSNSQKSALNPTYPPHLGYGMVGGAY------GALGAGY 413
A+ + +++ S G+ S + P + H G + G + G G G
Sbjct: 416 AQRKEERRAHLQTLFTHIRSPGTMSPIPSPMPGFHHHPPGGPMSGPHHPTMYIGQNGQGL 475
Query: 414 VPAGFAQPMVYGR----------GAAPGGMAMLPMLL-----PDGRIGY 447
VP QPM YG GA P M+P L P R+G+
Sbjct: 476 VP---PQPMGYGYQVQFMPGVRPGAGPANY-MMPFPLQRQTQPGPRVGF 520
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 135/286 (47%), Gaps = 18/286 (6%)
Query: 92 DEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
+E+ A + D ++ E + + + +Y+G + ++ L IG+V+ +R+
Sbjct: 23 EEQPAAATTTADQSAEEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRV 82
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLF 203
+ S ++ GYA+V + E +AIEELN ++G+ + +Q +F
Sbjct: 83 CRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYTPIEGRPCRIMWSQRDPSARRSGDGNIF 142
Query: 204 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 263
I N+ + + G ++S ++ D Q++ F F+ Y AE + + +
Sbjct: 143 IKNLHPAIDNKALHDTFSAFGK-ILSCKVAAD--EFGQSKCFGFVHYETAEAAEAAIENV 199
Query: 264 SNPKFKLDDNAPTVSWADPRNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGK 319
+ L+D V + S ++KA +YVKN+ + +++ ++LFA +GK
Sbjct: 200 NG--MLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFAPYGK 257
Query: 320 ITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
IT + + + G+ + +GFV+F SA+KA++ EI+GQ +
Sbjct: 258 ITSIYLEKDQDGKSKG-FGFVNFENHDSAVKAVEELNDKEINGQKI 302
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 133/327 (40%), Gaps = 50/327 (15%)
Query: 129 HDASDDDLRH-FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
H A D+ H + G++ ++ + G++K + FV + T E A AIE +N L
Sbjct: 147 HPAIDNKALHDTFSAFGKILSCKV-AADEFGQSKCFGFVHYETAEAAEAAIENVNGMLLN 205
Query: 188 ------GKKIKCSAAQAKH--------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
GK I ++K +++ N+ N+ E+ K G + SI L
Sbjct: 206 DREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFAPYGK-ITSIYLE 264
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
KD +++GF F+ + NH A + +++++ + ++ V A +
Sbjct: 265 KDQDG--KSKGFGFVNFENHDSAVKAVEELNDKE--INGQKIYVGRAQKKRERLEELKKQ 320
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
E A Q L+VKNL I ++L+E F G IT + G+ + +GF
Sbjct: 321 YEAARLEKLAKYQGVNLFVKNLDDAIDSEKLEEEFKSFGTITSAKVMVDDAGKSKG-FGF 379
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGY 399
V F A KA+ I+G+ L +LA+ + + ++S L
Sbjct: 380 VCFTTPEEATKAITEMNTRMINGKPLYVALAQRK---------DVRRSQLEQQIQARNQM 430
Query: 400 GMVGGAYGALGAGYVPAGFAQPMVYGR 426
M A G L P F PM YG+
Sbjct: 431 RMQNAAAGGL-----PGQFMPPMFYGQ 452
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 83 IDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPH-GSEVYLGGIPHDASDDDLRHFCK 141
I+ QK Y G + K ++ ++ + A L L + G +++ + + L K
Sbjct: 297 INGQKIYVGRAQKKRERLEELKKQYEAARLEKLAKYQGVNLFVKNLDDAIDSEKLEEEFK 356
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
S G +T ++M D+G++KG+ FV F T E A++AI E+N+ + GK + + AQ K
Sbjct: 357 SFGTITSAKVMV-DDAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRK 413
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 116/261 (44%), Gaps = 18/261 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 47 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 106
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KG+ + +Q + +FI N+ + G ++
Sbjct: 107 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 165
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L+D V + S
Sbjct: 166 SCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDKKVFVGHHISKKDRQS 221
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +YVKN+ ++T + +ELF G IT I G+ R +GFV++ +
Sbjct: 222 KFEEMKANFTNVYVKNIDPEVTDEEFRELFGKFGDITSATISRDDSGKSRG-FGFVNYVD 280
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
+A A+ + + GQ L
Sbjct: 281 HENAQTAVDDLNDKDFHGQKL 301
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 99/230 (43%), Gaps = 30/230 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 140 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 198
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ +K +++ N+ +++ R+ K G +
Sbjct: 199 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYVKNIDPEVTDEEFRELFGKFGD-I 257
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
S + +D ++ ++RGF F+ Y +H A+ + +++ F K +
Sbjct: 258 TSATISRD--DSGKSRGFGFVNYVDHENAQTAVDDLNDKDFHGQKLYVGRAQKKHEREEE 315
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
+ E ++ Q LYVKNL D+ ++L+ELF+ G IT +
Sbjct: 316 LRRQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSAFGTITSAKV 365
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 9/122 (7%)
Query: 84 DAQKHYDG----DEEMKVAES-DKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRH 138
+A KH +G D+++ V K D + K E+ A + + VY+ I + +D++ R
Sbjct: 193 NAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA---NFTNVYVKNIDPEVTDEEFRE 249
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
G++T I + DSG+++G+ FV + E A A+++LN + G+K+ AQ
Sbjct: 250 LFGKFGDITSATISR-DDSGKSRGFGFVNYVDHENAQTAVDDLNDKDFHGQKLYVGRAQK 308
Query: 199 KH 200
KH
Sbjct: 309 KH 310
>gi|332858528|ref|XP_003317002.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 1
[Pan troglodytes]
Length = 330
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 125/271 (46%), Gaps = 19/271 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N LKG+ I+ +Q +FI N+ + + + G ++S +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+ D + RGF F+ + H A+ + M+ L+D V R AE
Sbjct: 130 VACDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDRKVFVGHFKSRREREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +YVKNLP D+ + L+ELF+ GK+ V + G R +GFV+F +
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A KA+ + E+ G++L A+ + +++
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQN 274
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 92/206 (44%), Gaps = 31/206 (15%)
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH- 200
+ G + ++ D ++G+ FV F T E A QAI +N L +K+ +++
Sbjct: 121 TFGNILSCKV--ACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 201 -------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAF 247
+++ N+P + E +++ ++ G ++S+++++D N+ +R F F
Sbjct: 179 REAELGARALEFTNIYVKNLPVDVDEQGLQELFSQFGK-MLSVKVMRD--NSGHSRCFGF 235
Query: 248 IEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA---------- 295
+ + H A+ + M+ + +L + +N Q+K
Sbjct: 236 VNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVN 295
Query: 296 LYVKNLPKDITQDRLKELFAHHGKIT 321
LYVKNL I D+L++ F+ +G IT
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVIT 321
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
+++ AEL A + +Y+ +P D + L+ G++ V++M+ +SG ++ + F
Sbjct: 177 REREAELGARALEFTNIYVKNLPVDVDEQGLQELFSQFGKMLSVKVMR-DNSGHSRCFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V F E A +A+ +N E+ G+ + AQ +
Sbjct: 236 VNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKR 269
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 117/241 (48%), Gaps = 16/241 (6%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G + H+ + L + V R+ + + + GYA+V F + A++A+E L
Sbjct: 35 LYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAAKAMEVL 94
Query: 182 NSCELKGKKIKC-------SAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
N L GK I+ + ++ H +FI N+ + + GP V+S ++
Sbjct: 95 NFTPLNGKPIRIMFSHRDPTTRRSGHANVFIKNLDTKIDNKALYETFASFGP-VLSCKVA 153
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR--NAESSAAS 291
D N Q++G+ FI++ N A+ + +++ ++D V R E++ +
Sbjct: 154 VD--NNGQSKGYGFIQFENEEDAQSAINRLNG--MLVNDREVYVGPFVRRLERIEANGSP 209
Query: 292 QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKA 351
+ +YVKNL + + + LK++F+ +G IT ++ + G+ R +GFV+F SA A
Sbjct: 210 KFTNVYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRG-FGFVNFQSPDSAAAA 268
Query: 352 L 352
+
Sbjct: 269 V 269
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 123/278 (44%), Gaps = 33/278 (11%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ V++ + + L S G V ++ ++G++KGY F+ F +E A AI
Sbjct: 121 ANVFIKNLDTKIDNKALYETFASFGPVLSCKVAV-DNNGQSKGYGFIQFENEEDAQSAIN 179
Query: 180 ELNSCELKGK------------KIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
LN + + +I+ + + +++ N+ ++D++K + G
Sbjct: 180 RLNGMLVNDREVYVGPFVRRLERIEANGSPKFTNVYVKNLSETTSDEDLKKIFSSYG--A 237
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWAD---PRN 284
I+ +V QN ++RGF F+ + + A + +K++ F D V A R
Sbjct: 238 ITSAIVMKDQNG-KSRGFGFVNFQSPDSAAAAVEKLNGMTF--SDKVWYVGRAQRKGERE 294
Query: 285 AE---------SSAASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
AE +S ++KA LY+KNL I ++RLKELF+ G IT + + G
Sbjct: 295 AELKAKFEQERNSRYEKMKAANLYLKNLGDTIDEERLKELFSEFGSITSCKVMLDQQGLS 354
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
+ GFV F+ A +AL I + L ++A+
Sbjct: 355 KGS-GFVAFSTPEEASRALSEMNGKMIGKKPLYVAIAQ 391
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 26/154 (16%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
P + VY+ + SD+DL+ S G +T +MK ++ G+++G+ FV F++ + A+
Sbjct: 209 PKFTNVYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQN-GKSRGFGFVNFQSPDSAAA 267
Query: 177 AIEELNSCELKGKKIKCSAAQAK------------------------HRLFIGNVPRNWG 212
A+E+LN K AQ K L++ N+
Sbjct: 268 AVEKLNGMTFSDKVWYVGRAQRKGEREAELKAKFEQERNSRYEKMKAANLYLKNLGDTID 327
Query: 213 EDDMRKAVTKIGPGVISIELVKDPQNANQNRGFA 246
E+ +++ ++ G + S +++ D Q ++ GF
Sbjct: 328 EERLKELFSEFG-SITSCKVMLDQQGLSKGSGFV 360
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 120/262 (45%), Gaps = 18/262 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + + +Y+G + ++ L IG V +R+ + + + GYA+V + +
Sbjct: 56 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGE 115
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+EELN +KG+ + +Q + +FI N+ + G +
Sbjct: 116 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 174
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ +D +N N ++G+ F+ Y A + + ++ L++ V P+
Sbjct: 175 LSCKVAQD-ENGN-SKGYGFVHYETDEAAHQAIKHVNG--MLLNEKKVYVGHHIPKKDRQ 230
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S ++KA +YVKN+ + + D +ELF +G IT + + G+ R +GFV+F
Sbjct: 231 SKFEEMKANFTNIYVKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRG-FGFVNFT 289
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
SA KA++ + GQ L
Sbjct: 290 THESAAKAVEELHGKDFRGQDL 311
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 100/232 (43%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + ++G +KGY FV + T E A QAI+ +
Sbjct: 150 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAAHQAIKHV 208
Query: 182 NSCELKGKKIKCSA------AQAKH--------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ Q+K +++ N+ +D+ R+ K G +
Sbjct: 209 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNISTEASDDEFRELFEKYG-DI 267
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D + ++RGF F+ + H A + +++ F+ D V A ++
Sbjct: 268 TSSSLARDQEG--KSRGFGFVNFTTHESAAKAVEELHGKDFRGQD--LYVGRAQKKHERE 323
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E + Q LY+KNL D+ ++L+++FA G IT +
Sbjct: 324 EELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLRQMFAEFGPITSAKV 375
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 86/177 (48%), Gaps = 28/177 (15%)
Query: 85 AQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKS 142
A KH +G E KV +K + ++ + + + +Y+ I +ASDD+ R +
Sbjct: 204 AIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNISTEASDDEFRELFEK 263
Query: 143 IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH-- 200
G++T + + ++ G+++G+ FV F T E A++A+EEL+ + +G+ + AQ KH
Sbjct: 264 YGDITSSSLARDQE-GKSRGFGFVNFTTHESAAKAVEELHGKDFRGQDLYVGRAQKKHER 322
Query: 201 ----------------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L+I N+ + ++ +R+ + GP + S ++++D
Sbjct: 323 EEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLRQMFAEFGP-ITSAKVMRD 378
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 117/251 (46%), Gaps = 14/251 (5%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G + HD +D L + +V VRI + + ++ GY +V F A++AI+ L
Sbjct: 26 LYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNAHDAAKAIDVL 85
Query: 182 NSCELKGKKIKCSAA--------QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
N L GK I+ + +FI N+ + + + G ++S ++
Sbjct: 86 NFTPLNGKIIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALYDTFSAFG-NILSCKVA 144
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS-AASQ 292
D + Q++G F+++ + A+ + K+ N D + ++ ES+ + ++
Sbjct: 145 TDA--SGQSKGHGFVQFESEESAQNAIDKL-NGMLINDKQVFVGPFLRKQDRESALSGTK 201
Query: 293 VKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
++VKNL +T+ L+ +F +G IT V+ G+ + +GFV+FA A KA+
Sbjct: 202 FNNVFVKNLLDSMTEADLERIFGEYGAITSAVVMRDVDGKSKG-FGFVNFANVDDAAKAV 260
Query: 353 KNTEKYEIDGQ 363
+ DG+
Sbjct: 261 EALNGKNFDGK 271
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/364 (23%), Positives = 144/364 (39%), Gaps = 66/364 (18%)
Query: 126 GIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE 185
I H A D F G + ++ SG++KG+ FV F ++E A AI++LN
Sbjct: 122 AIDHKALYDTFSAF----GNILSCKVATDA-SGQSKGHGFVQFESEESAQNAIDKLNGML 176
Query: 186 LKGKKIKCSAAQAK------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
+ K++ K + +F+ N+ + E D+ + + G + S ++
Sbjct: 177 INDKQVFVGPFLRKQDRESALSGTKFNNVFVKNLLDSMTEADLERIFGEYG-AITSAVVM 235
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
+D +++GF F+ + N A + + ++ F D V A ++
Sbjct: 236 RDVDG--KSKGFGFVNFANVDDAAKAVEALNGKNF--DGKEWYVGKAQKKSERELELKGQ 291
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
E+ LY+KNL + + L ELF+ G IT + G R GF
Sbjct: 292 HEQITKETVDKYHGTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRDPNGISRGS-GF 350
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT---SGGSNSQKSALNPTYPPH 396
V F+ A +AL + G+ L +LA+ + D++ + S S+ +A+ P P
Sbjct: 351 VSFSIAEGATRALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQSRPAAITPNVSPR 410
Query: 397 LGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQ 456
+ +G PA Q +YG+ A P +P GY QQ
Sbjct: 411 MPLYPLGA----------PA-IGQQFLYGQAA--------PATIPQAAFGY-------QQ 444
Query: 457 HNPP 460
H P
Sbjct: 445 HFVP 448
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
HG+ +Y+ + D++L G +T ++M+ + G ++G FV+F E A++A
Sbjct: 304 HGTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRDPN-GISRGSGFVSFSIAEGATRA 362
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + GK + + AQ K
Sbjct: 363 LGEMNGKMVAGKPLYVALAQRK 384
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 67/151 (44%), Gaps = 26/151 (17%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ V++ + ++ DL G +T +M+ D G++KG+ FV F + A++A+E
Sbjct: 203 NNVFVKNLLDSMTEADLERIFGEYGAITSAVVMRDVD-GKSKGFGFVNFANVDDAAKAVE 261
Query: 180 ELNSCELKGKKIKCSAAQAKH------------------------RLFIGNVPRNWGEDD 215
LN GK+ AQ K L+I N+ + G+++
Sbjct: 262 ALNGKNFDGKEWYVGKAQKKSERELELKGQHEQITKETVDKYHGTNLYIKNLDDSVGDEE 321
Query: 216 MRKAVTKIGPGVISIELVKDPQNANQNRGFA 246
+ + ++ G + S ++++DP ++ GF
Sbjct: 322 LMELFSEFGT-ITSCKVMRDPNGISRGSGFV 351
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 120/262 (45%), Gaps = 19/262 (7%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KG+ + +Q + +FI N+ + G ++
Sbjct: 112 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A+ + + ++ L+D V + S
Sbjct: 171 SCKVAQD--EFGNSKGYGFVHYETAEAAQNAIKHVNG--MLLNDKKVFVGHHIAKKDRQS 226
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIP-PAKPGQERSRYGFVHFA 343
++KA +YVKN+ +D T++ ++LF G+IT + A+ G+ R +GFV+F
Sbjct: 227 KFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRG-FGFVNFT 285
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
+A A++ + GQ L
Sbjct: 286 SHDNAAAAVEALNDKDFKGQKL 307
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 102/232 (43%), Gaps = 33/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A AI+ +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAAQNAIKHV 203
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ AK +++ N+ ++ E++ R K G +
Sbjct: 204 NGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGE-I 262
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D ++ ++RGF F+ + +H A + + +++ FK V A ++
Sbjct: 263 TSATLARDAESG-KSRGFGFVNFTSHDNAAAAVEALNDKDFK--GQKLYVGRAQKKHERE 319
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LY+KNL DI ++L+ELF+ +G IT +
Sbjct: 320 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKV 371
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 8/122 (6%)
Query: 84 DAQKHYDG----DEEMKVAES-DKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRH 138
+A KH +G D+++ V K D + K E+ A + + VY+ I D ++++ R
Sbjct: 198 NAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKA---NFTNVYVKNIDQDTTEEEFRD 254
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
+ GE+T + + +SG+++G+ FV F + + A+ A+E LN + KG+K+ AQ
Sbjct: 255 LFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQK 314
Query: 199 KH 200
KH
Sbjct: 315 KH 316
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 130/270 (48%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN D+ +RLKELF+ +GK V + G+ + +GFV F +
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKG-FGFVSFEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ +I+G+++ A+ + +++
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQ 273
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 132/284 (46%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T++ A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQDAADRAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+G+D +++ +K G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS----NPKF--------KLDDNAP 275
+S++++ DP +++GF F+ + H A + ++M+ N K K++ A
Sbjct: 218 LSVKVMTDP--TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQE 333
+ E + Q LY+KNL I ++L++ F+ G IT KV++ + G+
Sbjct: 276 LKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML---EDGRS 332
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 333 KG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 29/200 (14%)
Query: 75 ETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDD 134
ET+D D + + + KV K++ AEL A + VY+ D D+
Sbjct: 146 ETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDE 205
Query: 135 DLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194
L+ G+ V++M +G++KG+ FV+F E A++A+EE+N ++ GK +
Sbjct: 206 RLKELFSKYGKTLSVKVMT-DPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVG 264
Query: 195 AAQAK------------------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISI 230
AQ K L+I N+ ++ +RK + G SI
Sbjct: 265 RAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG----SI 320
Query: 231 ELVKDPQNANQNRGFAFIEY 250
K +++GF F+ +
Sbjct: 321 TSAKVMLEDGRSKGFGFVCF 340
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 120/262 (45%), Gaps = 19/262 (7%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KG+ + +Q + +FI N+ + G ++
Sbjct: 112 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A+ + + ++ L+D V + S
Sbjct: 171 SCKVAQD--EFGNSKGYGFVHYETAEAAQNAIKHVNG--MLLNDKKVFVGHHIAKKDRQS 226
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIP-PAKPGQERSRYGFVHFA 343
++KA +YVKN+ +D T++ ++LF G+IT + A+ G+ R +GFV+F
Sbjct: 227 KFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRG-FGFVNFT 285
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
+A A++ + GQ L
Sbjct: 286 SHDNAAAAVEALNDKDFKGQKL 307
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 102/232 (43%), Gaps = 33/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A AI+ +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAAQNAIKHV 203
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ AK +++ N+ ++ E++ R K G +
Sbjct: 204 NGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGE-I 262
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D ++ ++RGF F+ + +H A + + +++ FK V A ++
Sbjct: 263 TSATLARDAESG-KSRGFGFVNFTSHDNAAAAVEALNDKDFK--GQKLYVGRAQKKHERE 319
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LY+KNL DI ++L+ELF+ +G IT +
Sbjct: 320 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKV 371
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 8/122 (6%)
Query: 84 DAQKHYDG----DEEMKVAES-DKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRH 138
+A KH +G D+++ V K D + K E+ A + + VY+ I D ++++ R
Sbjct: 198 NAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKA---NFTNVYVKNIDQDTTEEEFRD 254
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
+ GE+T + + +SG+++G+ FV F + + A+ A+E LN + KG+K+ AQ
Sbjct: 255 LFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQK 314
Query: 199 KH 200
KH
Sbjct: 315 KH 316
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 121/262 (46%), Gaps = 18/262 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + + +Y+G + ++ L IG V +R+ + + + GYA+V + +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGE 114
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+EELN +KG+ + +Q + +FI N+ + G +
Sbjct: 115 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 173
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ +D +N N ++G+ F+ Y A + + ++ L++ V + P+
Sbjct: 174 LSCKVAQD-ENGN-SKGYGFVHYETDEAAAQAIKHVNG--MLLNEKKVYVGYHIPKKDRQ 229
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S ++KA +YVKN+ D+T + ++LF G +T + + G+ R +GFV+F
Sbjct: 230 SKFEEMKANFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQEGKTRG-FGFVNFT 288
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
+A KA++ + GQ L
Sbjct: 289 THEAAFKAVEELNGKDFRGQDL 310
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 29/158 (18%)
Query: 102 KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAK 161
K D + K E+ A + + VY+ I D +D+D R + G+VT + + ++ G+ +
Sbjct: 225 KKDRQSKFEEMKA---NFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQE-GKTR 280
Query: 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------------- 200
G+ FV F T E A +A+EELN + +G+ + AQ KH
Sbjct: 281 GFGFVNFTTHEAAFKAVEELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKY 340
Query: 201 ---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L+I N+ + ++ +R+ + GP + S ++++D
Sbjct: 341 QGVNLYIKNLDDDVDDEKLRQMFAEFGP-ITSAKVMRD 377
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 82/173 (47%), Gaps = 18/173 (10%)
Query: 197 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 256
Q L++G + + E + + ++IG V SI + +D ++ G+A++ Y +
Sbjct: 56 QNSASLYVGELDPSVTEAMLFELFSQIG-AVASIRVCRDAV-TRRSLGYAYVNYNSTPDG 113
Query: 257 EYSRQKMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKEL 313
E + ++++ + L P + W+ DP ++ + +++KNL I L +
Sbjct: 114 EKALEELN---YTLIKGRPCRIMWSQRDPALRKTGQGN----VFIKNLDVAIDNKALHDT 166
Query: 314 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 366
FA G I + + G + YGFVH+ +A +A+K+ ++G +L+
Sbjct: 167 FAAFGNILSCKVAQDENGNSKG-YGFVHYETDEAAAQAIKH-----VNGMLLN 213
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 123/268 (45%), Gaps = 23/268 (8%)
Query: 114 ALPPH---GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRT 170
A P H + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 39 AAPAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNS 98
Query: 171 KELASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTK 222
E +A+EELN +KGK + +Q + +FI N+ +
Sbjct: 99 SEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAA 158
Query: 223 IGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP 282
G ++S ++ +D ++G+ F+ Y A + + ++ L++ V P
Sbjct: 159 FG-NILSCKVAQD--ELGNSKGYGFVHYETAEAANNAIKHVNG--MLLNEKKVFVGHHIP 213
Query: 283 RNAESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-Y 337
+ S ++KA +YVKN+ D++ + ++LF HG IT I A+ Q +SR +
Sbjct: 214 KKERMSKFEEMKANFTNIYVKNIDLDVSDEDFRDLFEKHGDITSASI--ARDDQGKSRGF 271
Query: 338 GFVHFAERSSAMKALKNTEKYEIDGQVL 365
GFV++ + +A A+ + GQ L
Sbjct: 272 GFVNYIKHEAASAAVDALNDTDFRGQKL 299
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 97/228 (42%), Gaps = 34/228 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + H + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQ-DELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ K +A +++ N+ + ++D R K G +
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEDFRDLFEKHG-DI 255
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S + +D Q ++RGF F+ Y H A + +++ F+ V A ++
Sbjct: 256 TSASIARDDQG--KSRGFGFVNYIKHEAASAAVDALNDTDFR--GQKLYVGRAQKKHERE 311
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 321
E + Q LY+KNL D+ ++L+++F G IT
Sbjct: 312 EELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTIT 359
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 84 DAQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCK 141
+A KH +G E KV +K++ ++ + + + +Y+ I D SD+D R +
Sbjct: 191 NAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVSDEDFRDLFE 250
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G++T I + D G+++G+ FV + E AS A++ LN + +G+K+ AQ KH
Sbjct: 251 KHGDITSASIAR-DDQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKH 308
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 120/262 (45%), Gaps = 19/262 (7%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KG+ + +Q + +FI N+ + G ++
Sbjct: 112 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A+ + + ++ L+D V + S
Sbjct: 171 SCKVAQD--EFGNSKGYGFVHYETAEAAQNAIKHVNG--MLLNDKKVFVGHHIAKKDRQS 226
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIP-PAKPGQERSRYGFVHFA 343
++KA +YVKN+ +D T++ ++LF G+IT + A+ G+ R +GFV+F
Sbjct: 227 KFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRG-FGFVNFT 285
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
+A A++ + GQ L
Sbjct: 286 SHDNAAAAVEALNDKDFKGQKL 307
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 102/232 (43%), Gaps = 33/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A AI+ +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAAQNAIKHV 203
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ AK +++ N+ ++ E++ R K G +
Sbjct: 204 NGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGE-I 262
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D ++ ++RGF F+ + +H A + + +++ FK V A ++
Sbjct: 263 TSATLARDAESG-KSRGFGFVNFTSHDNAAAAVEALNDKDFK--GQKLYVGRAQKKHERE 319
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LY+KNL DI ++L+ELF+ +G IT +
Sbjct: 320 EELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKV 371
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 8/122 (6%)
Query: 84 DAQKHYDG----DEEMKVAES-DKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRH 138
+A KH +G D+++ V K D + K E+ A + + VY+ I D ++++ R
Sbjct: 198 NAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKA---NFTNVYVKNIDQDTTEEEFRD 254
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
+ GE+T + + +SG+++G+ FV F + + A+ A+E LN + KG+K+ AQ
Sbjct: 255 LFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQK 314
Query: 199 KH 200
KH
Sbjct: 315 KH 316
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 113/251 (45%), Gaps = 18/251 (7%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G + +D L G+V VR+ + S + GYA+V F A++A+E L
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 182 NSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
N L GK I+ S +FI N+ + + + G ++S ++
Sbjct: 101 NFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFG-NILSCKVA 159
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE---SSAA 290
D Q++GF F++Y A+ + + ++ L ++ P R E S
Sbjct: 160 TD--EMGQSKGFGFVQYDKGEAAQSAIKSLNG---MLINDKPVYVGPFLRKQERENSVDK 214
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
++ ++VKNL + T++ L ++F +G IT VI G+ R +GF++F A +
Sbjct: 215 TKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRC-FGFINFKSPDDAAR 273
Query: 351 ALKNTEKYEID 361
A++ +I+
Sbjct: 274 AVEELNGKKIN 284
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 103/426 (24%), Positives = 170/426 (39%), Gaps = 83/426 (19%)
Query: 95 MKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG 154
++V S++D ++ + +++ + L + G + ++
Sbjct: 110 IRVMYSNRDPSSRRSGS--------ANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVAT- 160
Query: 155 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------HRL 202
+ G++KG+ FV + E A AI+ LN + K + K + +
Sbjct: 161 DEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNV 220
Query: 203 FIGNVPRNWGEDDMRK---AVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 259
F+ N+ + ++D+ K A I VI + + ++R F FI + + A +
Sbjct: 221 FVKNLSESTTKEDLVKIFGAYGNITSAVIMVGM------DGKSRCFGFINFKSPDDAARA 274
Query: 260 RQKMSNPKFKLDDNAPTVSWADP---------RNAESS---AASQVKAL--YVKNLPKDI 305
++++ K ++D V A R E S AA + + L Y+KNL I
Sbjct: 275 VEELNGKK--INDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSI 332
Query: 306 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
D+L ELF+++GKIT I G + GFV F+ R A +AL I G+ L
Sbjct: 333 GDDQLCELFSNYGKITSCKIMRDANGVSKGS-GFVAFSTREEASQALTEMNGKMISGKPL 391
Query: 366 DCSLAKPQADQKTSGGSNSQKSALNPT------------YPP------HLGYGMVGGAYG 407
+ A+ + D+K +Q S + P YPP L YG A
Sbjct: 392 YVAFAQRKEDRKVM--LQAQFSQVRPVPMTPSMAPRLPMYPPMAPLGQQLFYGQAPPAIM 449
Query: 408 ALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGR 467
G+ GF Q +V G PGG M P+ + P VQQ P+P R
Sbjct: 450 PPQPGF---GFQQQLV--PGMRPGGAHM-----PNYFV------PVVQQGQQGPRPGIRR 493
Query: 468 GGAGSS 473
GAGS+
Sbjct: 494 SGAGSA 499
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 129/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN D+ RLKELF+ +GK V + G+ + +GFV F +
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKG-FGFVSFEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ +I+G+++ A+ + +++
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQ 273
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 129/285 (45%), Gaps = 39/285 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T++ A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQDAADRAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+G+D +++ +K G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYG-KT 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS----NPKF--------KLDDNAP 275
+S++++ DP + +++GF F+ + H A + ++M+ N K K++ A
Sbjct: 218 LSVKVMTDP--SGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E + Q LY+KNL I ++L++ F+ G IT AK E
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS-----AKVMLEDG 330
Query: 336 R---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
R +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 331 RSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 29/200 (14%)
Query: 75 ETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDD 134
ET+D D + + + KV K++ AEL A + VY+ D D
Sbjct: 146 ETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDG 205
Query: 135 DLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194
L+ G+ V++M SG++KG+ FV+F E A++A+EE+N ++ GK +
Sbjct: 206 RLKELFSKYGKTLSVKVMT-DPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVG 264
Query: 195 AAQAK------------------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISI 230
AQ K L+I N+ ++ +RK + G +
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAK 324
Query: 231 ELVKDPQNANQNRGFAFIEY 250
+++D +++GF F+ +
Sbjct: 325 VMLED----GRSKGFGFVCF 340
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + + A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPDEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 125/270 (46%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N LKG+ I+ +Q +FI N+ + + + G ++S +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+ D + RGF F+ + H A+ + M+ L+D V R AE
Sbjct: 130 VACDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDRKVFVGHFKSRREREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +YVKNLP D+ + L++LF+ GK+ V + G R +GFV+F +
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+ + E+ G++L A+ + +++
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQ 273
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 120/282 (42%), Gaps = 33/282 (11%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + ++ D ++G+ FV F T E A QAI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKV--ACDEHGSRGFGFVHFETHEAAQQAINTM 158
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L +K+ +++ +++ N+P + E ++ ++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFG-KM 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSWADPRNA 285
+S+++++D N+ +R F F+ + H A+ + M+ + +L + +N
Sbjct: 218 LSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 286 ESSAASQVKA----------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
Q+K LYVKNL I D+L++ F+ +G IT + G
Sbjct: 276 LKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV--MTEGGHSK 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERK 375
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 29/179 (16%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV +++ AEL A + +Y+ +P D + L+ G++ V++M+
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR-D 225
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHR------ 201
+SG ++ + FV F E A +A+ +N E+ G+ + AQ K R
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQ 285
Query: 202 ----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L++ N+ + +D +RK + G I K ++GF F+ +
Sbjct: 286 DRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYG----VITSAKVMTEGGHSKGFGFVCF 340
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 17/168 (10%)
Query: 33 VDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGIDAQKHYDGD 92
V + DN V +E+ EE ++ V + +E + ++ AQK +
Sbjct: 220 VKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH------MNGKEVSGRLLYAGRAQKRVERQ 273
Query: 93 EEMKV-AESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
E+K E K D +++ G +Y+ + DD LR G +T ++
Sbjct: 274 NELKRRFEQMKQDRLRRY--------QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV 325
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
M + G +KG+ FV F + E A++A+ E+N + K + + AQ K
Sbjct: 326 MT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 125/270 (46%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N LKG+ I+ +Q +FI N+ + + + G ++S +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+ D + RGF F+ + H A+ + M+ L+D V R AE
Sbjct: 130 VACDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDRKVFVGHFKSRREREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +YVKNLP D+ + L++LF+ GK+ V + G R +GFV+F +
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+ + E+ G++L A+ + +++
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQ 273
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 120/282 (42%), Gaps = 33/282 (11%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + ++ D ++G+ FV F T E A QAI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKV--ACDEHGSRGFGFVHFETHEAAQQAINTM 158
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L +K+ +++ +++ N+P + E ++ ++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFG-KM 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSWADPRNA 285
+S+++++D N+ +R F F+ + H A+ + M+ + +L + +N
Sbjct: 218 LSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 286 ESSAASQVKA----------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
Q+K LYVKNL I D+L++ F+ +G IT + G
Sbjct: 276 LKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV--MTEGGHSK 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERK 375
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 29/179 (16%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV +++ AEL A + +Y+ +P D + L+ G++ V++M+
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR-D 225
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHR------ 201
+SG ++ + FV F E A +A+ +N E+ G+ + AQ K R
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQ 285
Query: 202 ----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L++ N+ + +D +RK + G I K ++GF F+ +
Sbjct: 286 DRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYG----VITSAKVMTEGGHSKGFGFVCF 340
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 17/168 (10%)
Query: 33 VDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGIDAQKHYDGD 92
V + DN V +E+ EE ++ V + +E + ++ AQK +
Sbjct: 220 VKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH------MNGKEVSGRLLYAGRAQKRVERQ 273
Query: 93 EEMKV-AESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
E+K E K D +++ G +Y+ + DD LR G +T ++
Sbjct: 274 NELKRRFEQMKQDRLRRY--------QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV 325
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
M + G +KG+ FV F + E A++A+ E+N + K + + AQ K
Sbjct: 326 MT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 125/270 (46%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N LKG+ I+ +Q +FI N+ + + + G ++S +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+ D + RGF F+ + H A+ + M+ L+D V R AE
Sbjct: 130 VACDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDRKVFVGHFKSRREREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +YVKNLP D+ + L++LF+ GK+ V + G R +GFV+F +
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+ + E+ G++L A+ + +++
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQ 273
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 120/282 (42%), Gaps = 33/282 (11%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + ++ D ++G+ FV F T E A QAI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKV--ACDEHGSRGFGFVHFETHEAAQQAINTM 158
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L +K+ +++ +++ N+P + E ++ ++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFG-KM 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSWADPRNA 285
+S+++++D N+ +R F F+ + H A+ + M+ + +L + +N
Sbjct: 218 LSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 286 ESSAASQVKA----------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
Q+K LYVKNL I D+L++ F+ +G IT + G
Sbjct: 276 LKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV--MTEGGHSK 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERK 375
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 29/179 (16%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV +++ AEL A + +Y+ +P D + L+ G++ V++M+
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR-D 225
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHR------ 201
+SG ++ + FV F E A +A+ +N E+ G+ + AQ K R
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQ 285
Query: 202 ----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L++ N+ + +D +RK + G I K ++GF F+ +
Sbjct: 286 DRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYG----VITSAKVMTEGGHSKGFGFVCF 340
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 17/168 (10%)
Query: 33 VDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGIDAQKHYDGD 92
V + DN V +E+ EE ++ V + +E + ++ AQK +
Sbjct: 220 VKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH------MNGKEVSGRLLYAGRAQKRVERQ 273
Query: 93 EEMKV-AESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
E+K E K D +++ G +Y+ + DD LR G +T ++
Sbjct: 274 NELKRRFEQMKQDRLRRY--------QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV 325
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
M + G +KG+ FV F + E A++A+ E+N + K + + AQ K
Sbjct: 326 MT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 128/271 (47%), Gaps = 19/271 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KG+ I+ +Q L FI N+ + + + G ++S +
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N +RG+ F+ + H A + + M+ L+D V R AE
Sbjct: 130 VVCD---ENGSRGYGFVHFETHEAATRAIETMNG--MLLNDRKVFVGHFKSRKEREAEVG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN D+ DRL+E+F+ GK V + G+ + +GFV+F +
Sbjct: 185 ARAIEFTNVYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDNNGRSKG-FGFVNFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A KA+ + EI+G++L A+ + ++++
Sbjct: 244 AQKAVADMNGKEINGRLLYVGRAQKRLERQS 274
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 121/282 (42%), Gaps = 33/282 (11%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D ++GY FV F T E A++AIE +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVC--DENGSRGYGFVHFETHEAATRAIETM 158
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L +K+ +++ ++I N + +D +R+ ++ G
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEVGARAIEFTNVYIKNFGDDMDDDRLREIFSRFG-KT 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ D N +++GF F+ + H A+ + M+ + +L+ +
Sbjct: 218 LSVKVMMD--NNGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYVGRAQKRLERQSE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E Q LYVKNL I +RL++ F+ +G IT + G
Sbjct: 276 LKRKFEQMKQERVNRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKV--MTEGGRSK 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERK 375
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV K++ AE+ A + VY+ D DD LR G+ V++M
Sbjct: 167 KVFVGHFKSRKEREAEVGARAIEFTNVYIKNFGDDMDDDRLREIFSRFGKTLSVKVMM-D 225
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
++G +KG+ FV F E A +A+ ++N E+ G+ + AQ +
Sbjct: 226 NNGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYVGRAQKR 269
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMT--EGGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVSTKPLYVALAQRK 371
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 113/251 (45%), Gaps = 18/251 (7%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G + +D L G+V VR+ + S + GYA+V F A++A+E L
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 182 NSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
N L GK I+ S +FI N+ + + + G ++S ++
Sbjct: 101 NFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFG-NILSCKVA 159
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE---SSAA 290
D Q++GF F++Y A+ + + ++ L ++ P R E S
Sbjct: 160 TD--EMGQSKGFGFVQYDKGEAAQSAIKSLNG---MLINDKPVYVGPFLRKQERENSVDK 214
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
++ ++VKNL + T++ L ++F +G IT VI G+ R +GF++F A +
Sbjct: 215 TKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRC-FGFINFKSPDDAAR 273
Query: 351 ALKNTEKYEID 361
A++ +I+
Sbjct: 274 AVEELNGKKIN 284
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 103/426 (24%), Positives = 170/426 (39%), Gaps = 83/426 (19%)
Query: 95 MKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG 154
++V S++D ++ + +++ + L + G + ++
Sbjct: 110 IRVMYSNRDPSSRRSGS--------ANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVAT- 160
Query: 155 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------HRL 202
+ G++KG+ FV + E A AI+ LN + K + K + +
Sbjct: 161 DEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNV 220
Query: 203 FIGNVPRNWGEDDMRK---AVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 259
F+ N+ + ++D+ K A I VI + + ++R F FI + + A +
Sbjct: 221 FVKNLSESTTKEDLVKIFGAYGNITSAVIMVGM------DGKSRCFGFINFKSPDDAARA 274
Query: 260 RQKMSNPKFKLDDNAPTVSWADP---------RNAESS---AASQVKAL--YVKNLPKDI 305
++++ K ++D V A R E S AA + + L Y+KNL I
Sbjct: 275 VEELNGKK--INDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSI 332
Query: 306 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
D+L ELF+++GKIT I G + GFV F+ R A +AL I G+ L
Sbjct: 333 GDDQLCELFSNYGKITSCKIMRDANGVSKGS-GFVAFSTREEASQALTEMNGKMISGKPL 391
Query: 366 DCSLAKPQADQKTSGGSNSQKSALNPT------------YPP------HLGYGMVGGAYG 407
+ A+ + D+K +Q S + P YPP L YG A
Sbjct: 392 YVAFAQRKEDRKAM--LQAQFSQVRPVPMTPSMAPRLPMYPPMAPLGQQLFYGQAPPAIM 449
Query: 408 ALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGR 467
G+ GF Q +V G PGG M P+ + P VQQ P+P R
Sbjct: 450 PPQPGF---GFQQQLV--PGMRPGGAHM-----PNYFV------PVVQQGQQGPRPGIRR 493
Query: 468 GGAGSS 473
GAGS+
Sbjct: 494 SGAGSA 499
>gi|213623691|gb|AAI70089.1| LOC397919 protein [Xenopus laevis]
Length = 704
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 121/269 (44%), Gaps = 29/269 (10%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ IP+ S ++L+ ++ ++RI G D G KG A+V F T+ A++A+EE
Sbjct: 377 LFVKNIPYSTSAEELQEIFEN---AKDIRIPTGND-GSNKGIAYVEFSTEAEANKALEEK 432
Query: 182 NSCELKGKKIKCSAAQAKHR--------------LFIGNVPRNWGEDDMRKAVTKIGPGV 227
E++G+ + K + L + N+ + ED +R+ K
Sbjct: 433 QGAEIEGRSLFVDFTGEKSQNSGGRRGPAGDSKVLVVNNLSYSATEDSLREVFEK----A 488
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
SI + PQN + +GFAF+E+ + A+ + +N + + S
Sbjct: 489 TSIRI---PQNQGRAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRLEFSQGGGPQGGG 545
Query: 288 SAAS-QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346
S Q K L+V+ L +D T++ LKE F G I ++ G + +GFV F+
Sbjct: 546 RGGSVQSKTLFVRGLSEDTTEETLKEAF--DGSINARIVTDRDTGASKG-FGFVDFSSSE 602
Query: 347 SAMKALKNTEKYEIDGQVLDCSLAKPQAD 375
A A + E EIDG + AKP+ D
Sbjct: 603 DAKAAREAMEDGEIDGNKVTLDFAKPKGD 631
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 129/267 (48%), Gaps = 17/267 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+G + ++ L SIG V +R+ + + + GYA+V F++ A+ AI+
Sbjct: 37 SSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSPNDAAHAID 96
Query: 180 ELNSCELKGKKIKCSAAQ---AKHR-----LFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN + GK I+ +Q A R +FI N+ + + + G + S +
Sbjct: 97 VLNFQVINGKPIRVLYSQRDPAVRRSGVGNIFIKNLDKAIDNKALLDTFAQFGT-ITSAK 155
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D Q ++G+ F+++ A+ + ++ +L+D V R AE S
Sbjct: 156 VAMDGQ--GNSKGYGFVQFETQEAAQAAIDNVNG--MELNDKQVYVGPFQ-RRAERSNTG 210
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
+ K +YVKNL ++++ ++L+E FA HG +T VI + G+ + +GFV + E A
Sbjct: 211 EAKFNNVYVKNLSENLSDEKLREKFAEHGAVTSCVIMRDEEGKSKG-FGFVCYEEPEGAA 269
Query: 350 KALKNTEKYEIDGQVLDCSLAKPQADQ 376
A++ + Y D + A+ +A++
Sbjct: 270 AAVEKLDGYTEDEKTWVVCRAQKKAER 296
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 140/333 (42%), Gaps = 49/333 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRI-MKGKDSGEAKGYAFVTFRTKELASQAIEE 180
+++ + + L G +T ++ M G+ G +KGY FV F T+E A AI+
Sbjct: 127 IFIKNLDKAIDNKALLDTFAQFGTITSAKVAMDGQ--GNSKGYGFVQFETQEAAQAAIDN 184
Query: 181 LNSCELKGKKI----------KCSAAQAK-HRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
+N EL K++ + + +AK + +++ N+ N ++ +R+ + G V S
Sbjct: 185 VNGMELNDKQVYVGPFQRRAERSNTGEAKFNNVYVKNLSENLSDEKLREKFAEHG-AVTS 243
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSA 289
+++D + +++GF F+ Y A + +K+ + D+ V A + AE A
Sbjct: 244 CVIMRDEEG--KSKGFGFVCYEEPEGAAAAVEKLDG--YTEDEKTWVVCRAQ-KKAEREA 298
Query: 290 ASQVKA---------------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 334
+ K LY+KNL ++L+ELF G IT + G R
Sbjct: 299 ELKAKFDQERRERMEKMAGANLYIKNLEDGTDDEKLRELFKEFGTITSCRVMRDASGVSR 358
Query: 335 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYP 394
FV F+ A +A+ + + L +LA+ + +++ L +
Sbjct: 359 GS-AFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQRKEERRMR---------LQAQFA 408
Query: 395 PHL-GYGMVGGAYGALGAGYVPAGFAQPMVYGR 426
+ G GM GG + VP PM YG+
Sbjct: 409 QRMPGAGMPGGMAPYMPPPGVPGA---PMYYGQ 438
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 85 AQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIG 144
AQK + + E+K + D E+++ E +A G+ +Y+ + D+ LR K G
Sbjct: 290 AQKKAEREAELK---AKFDQERRERMEKMA----GANLYIKNLEDGTDDEKLRELFKEFG 342
Query: 145 EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
+T R+M+ SG ++G AFV F + + A++A+ E+N + K + + AQ K
Sbjct: 343 TITSCRVMRDA-SGVSRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQRK 396
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 130/270 (48%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN D+ +RLKELF+ +GK V + G+ + +GFV F +
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKG-FGFVSFEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ +I+G+++ A+ + +++
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQ 273
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 132/284 (46%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T++ A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQDAADRAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+G+D +++ +K G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS----NPKF--------KLDDNAP 275
+S++++ DP +++GF F+ + H A + ++M+ N K K++ A
Sbjct: 218 LSVKVMTDP--TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQE 333
+ E + Q LY+KNL I ++L++ F+ G IT KV++ + G+
Sbjct: 276 LKRKFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGAITSAKVML---EDGRS 332
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 333 KG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 29/200 (14%)
Query: 75 ETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDD 134
ET+D D + + + KV K++ AEL A + VY+ D D+
Sbjct: 146 ETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDE 205
Query: 135 DLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194
L+ G+ V++M +G++KG+ FV+F E A++A+EE+N ++ GK +
Sbjct: 206 RLKELFSKYGKTLSVKVMT-DPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVG 264
Query: 195 AAQAK------------------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISI 230
AQ K L+I N+ ++ +RK + G +
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLRKEFSPFGAITSAK 324
Query: 231 ELVKDPQNANQNRGFAFIEY 250
+++D +++GF F+ +
Sbjct: 325 VMLED----GRSKGFGFVCF 340
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGAITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 129/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN D+ RLKELF+ +GK V + G+ + +GFV F +
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKG-FGFVSFEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ +I+G+++ A+ + +++
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQ 273
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 129/285 (45%), Gaps = 39/285 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T++ A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQDAADRAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+G+D +++ +K G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYG-KT 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS----NPKF--------KLDDNAP 275
+S++++ DP + +++GF F+ + H A + ++M+ N K K++ A
Sbjct: 218 LSVKVMTDP--SGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E + Q LY+KNL I ++L++ F+ G IT AK E
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS-----AKVMLEDG 330
Query: 336 R---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
R +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 331 RSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 29/200 (14%)
Query: 75 ETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDD 134
ET+D D + + + KV K++ AEL A + VY+ D D
Sbjct: 146 ETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDG 205
Query: 135 DLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194
L+ G+ V++M SG++KG+ FV+F E A++A+EE+N ++ GK +
Sbjct: 206 RLKELFSKYGKTLSVKVMT-DPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVG 264
Query: 195 AAQAK------------------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISI 230
AQ K L+I N+ ++ +RK + G +
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAK 324
Query: 231 ELVKDPQNANQNRGFAFIEY 250
+++D +++GF F+ +
Sbjct: 325 VMLED----GRSKGFGFVCF 340
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + + A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPDEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 117/244 (47%), Gaps = 18/244 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + +D L G+V VR+ + + + GY +V + T + AS+A+
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 180 ELNSCELKGKKIKCSAA--------QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
ELN L G+ I+ + +FI N+ ++ + + + GP ++S +
Sbjct: 105 ELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGP-ILSCK 163
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ DP + Q++G+ F++Y A+ + K++ L+D V + +
Sbjct: 164 VAVDP--SGQSKGYGFVQYDTDEAAQGAIDKLNG--MLLNDKQVYVGPFVHKLQRDPSGE 219
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSA 348
+VK +YVKNL + ++ + L ++F G T VI + G+ +S+ +GFV+F A
Sbjct: 220 KVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVI--MRDGEGKSKGFGFVNFENSDDA 277
Query: 349 MKAL 352
+A+
Sbjct: 278 ARAV 281
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 137/320 (42%), Gaps = 54/320 (16%)
Query: 157 SGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKC-----------SAAQAKH-RLFI 204
SG++KGY FV + T E A AI++LN L K++ S + K +++
Sbjct: 169 SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYV 228
Query: 205 GNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS 264
N+ + ++++ K + G S +++D + +++GF F+ + N A + ++
Sbjct: 229 KNLSESLSDEELNKVFGEFGV-TTSCVIMRDGEG--KSKGFGFVNFENSDDAARAVDALN 285
Query: 265 NPKFKLDDNAPTVSWADPRN--------------AESSAASQVKALYVKNLPKDITQDRL 310
F DD V A ++ E++ SQ LYVKNL + +T D+L
Sbjct: 286 GKTF--DDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKL 343
Query: 311 KELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370
+E FA G IT + G R GFV F+ A +A+ I + L +LA
Sbjct: 344 REHFAPFGTITSCKVMRDPSGVSRGS-GFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Query: 371 KPQADQKTSGGSNSQKSALNPT-YPPHLGYGMVGGAYGALGAGYVPAG--FAQPMVYGRG 427
+ + D+K +Q S + P PP +G M Y P G Q + YG+G
Sbjct: 403 QRKEDRKAR--LQAQFSQMRPVNMPPAVGPRM---------QMYPPGGPPMGQQLFYGQG 451
Query: 428 AAPGGMAMLPMLLPDGRIGY 447
P ++P GY
Sbjct: 452 P--------PAMIPQPGFGY 463
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 124/269 (46%), Gaps = 15/269 (5%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + HD ++ L G + +R+ + + + GYA+V F+ A + +E
Sbjct: 316 ASLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMLTRRSLGYAYVNFQQLADAERVLE 375
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK ++ +Q L FI N+ ++ + K + G ++S +
Sbjct: 376 TMNLDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLEKSIDNKALYKTFSAFG-NILSCK 434
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF-KLDDNAPTVSWADPRNAESSA- 289
++ D N ++G+ F+ + N A+ + +KM+ + L R E A
Sbjct: 435 VISD---ENGSKGYGFVHFENQQAADKAIEKMNGVRLNNLKVYVGRFKSRKERELELGAR 491
Query: 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
A + +Y+KN +D+ DRL E+F G V + + G+ + +GFV + + A
Sbjct: 492 AREFTNVYIKNFGEDMDNDRLTEVFGKFGHALSVKVMTDESGKSKG-FGFVSYEKHEDAQ 550
Query: 350 KALKNTEKYEIDGQVLDCSLAKPQADQKT 378
+A+ E +G+ + A+ + +++T
Sbjct: 551 RAVDEMNGKEFNGKRIYVGRAQKKGERQT 579
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 129/307 (42%), Gaps = 39/307 (12%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + +++ D +KGY FV F ++ A +AIE++
Sbjct: 406 IFIKNLEKSIDNKALYKTFSAFGNILSCKVIS--DENGSKGYGFVHFENQQAADKAIEKM 463
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L K+ + A+ R F +N+GED + + K G
Sbjct: 464 NGVRLNNLKVYVGRFKSRKERELELGARAREFTNVYIKNFGEDMDNDRLTEVFGKFG-HA 522
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ D + +++GF F+ Y H A+ + +M+ +F K +
Sbjct: 523 LSVKVMTD--ESGKSKGFGFVSYEKHEDAQRAVDEMNGKEFNGKRIYVGRAQKKGERQTE 580
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E S+ Q LYVKNL I +RL++ F+ G IT + G
Sbjct: 581 LKRHFEQVKQERSSRYQGVNLYVKNLDDSIDDERLRKAFSPFGTITSAKV--MMEGGHSR 638
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSN------SQKSAL 389
+GFV F+ A KA+ + + L +LA+ + D++ + S ++
Sbjct: 639 GFGFVCFSAPEEAAKAVSEMNGKLVATKPLYVALAQRKRDRQVHLTNQYMQRMASFQAMS 698
Query: 390 NPTYPPH 396
NP + P+
Sbjct: 699 NPVFSPY 705
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 29/180 (16%)
Query: 95 MKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG 154
+KV K++ EL A + VY+ D +D L G V++M
Sbjct: 471 LKVYVGRFKSRKERELELGARAREFTNVYIKNFGEDMDNDRLTEVFGKFGHALSVKVMT- 529
Query: 155 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH-------------- 200
+SG++KG+ FV++ E A +A++E+N E GK+I AQ K
Sbjct: 530 DESGKSKGFGFVSYEKHEDAQRAVDEMNGKEFNGKRIYVGRAQKKGERQTELKRHFEQVK 589
Query: 201 ----------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L++ N+ + ++ +RKA + G +I K +RGF F+ +
Sbjct: 590 QERSSRYQGVNLYVKNLDDSIDDERLRKAFSPFG----TITSAKVMMEGGHSRGFGFVCF 645
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 66/137 (48%), Gaps = 12/137 (8%)
Query: 71 EEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEK----KKHAELL----ALPPHGSEV 122
E+ E+ + VD ++ K ++G + + V + K E+ K+H E + + G +
Sbjct: 544 EKHEDAQRAVDEMNG-KEFNG-KRIYVGRAQKKGERQTELKRHFEQVKQERSSRYQGVNL 601
Query: 123 YLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN 182
Y+ + D+ LR G +T ++M + G ++G+ FV F E A++A+ E+N
Sbjct: 602 YVKNLDDSIDDERLRKAFSPFGTITSAKVMM--EGGHSRGFGFVCFSAPEEAAKAVSEMN 659
Query: 183 SCELKGKKIKCSAAQAK 199
+ K + + AQ K
Sbjct: 660 GKLVATKPLYVALAQRK 676
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 123/258 (47%), Gaps = 24/258 (9%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + +D L +G+V VR+ + S + GY +V + AS+A++
Sbjct: 29 TSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALD 88
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
LN L G I+ + HR +FI N+ + + + G ++
Sbjct: 89 VLNFTPLNGNPIRVMYS---HRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFG-SIL 144
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ D ++ Q++GF F+++ A + +K++ L+D V + S
Sbjct: 145 SCKVATD--SSGQSKGFGFVQFDTEEAALKAIEKLNG--MLLNDKQVFVGPFLRKQERES 200
Query: 289 AASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAER 345
+ + K ++VKNL + +++ LK +F G IT VV+ + G+ +S+ +GFV+F
Sbjct: 201 VSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVV--MRDGEGKSKCFGFVNFENA 258
Query: 346 SSAMKALKNTEKYEIDGQ 363
A ++++ ++DG+
Sbjct: 259 DDAARSVEALNGKKVDGK 276
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 118/274 (43%), Gaps = 33/274 (12%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
I H A D F G + ++ SG++KG+ FV F T+E A +AIE+LN L
Sbjct: 128 IDHKALHDTFSAF----GSILSCKVAT-DSSGQSKGFGFVQFDTEEAALKAIEKLNGMLL 182
Query: 187 KGKKI------------KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
K++ S + +F+ N+ E+D++ + GP + S+ +++
Sbjct: 183 NDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGP-ITSVVVMR 241
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAPTVSWADP 282
D + +++ F F+ + N A S + ++ K K + S +
Sbjct: 242 DGEG--KSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQ 299
Query: 283 RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHF 342
E++ Q LYVKNL I D+LKELF G IT + G R GFV F
Sbjct: 300 SVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGS-GFVAF 358
Query: 343 AERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
+ A +AL I + L +LA+ + D+
Sbjct: 359 SSPEEAARALAEMNGRMIVSKPLYVALAQRKEDR 392
>gi|440638008|gb|ELR07927.1| hypothetical protein GMDG_02786 [Geomyces destructans 20631-21]
Length = 805
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 116/264 (43%), Gaps = 18/264 (6%)
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
A P + +Y+G + ++ L IG V +R+ + + + GYA+V + T
Sbjct: 56 AHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTID 115
Query: 174 ASQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGP 225
+A+EELN +KG+ + +Q + +FI N+ + G
Sbjct: 116 GEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG- 174
Query: 226 GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA 285
++S ++ +D + ++G+ F+ Y A + + ++ L++ V P+
Sbjct: 175 NILSCKVAQD--ESGNSKGYGFVHYETDEAASQAIKHVNG--MLLNEKKVFVGHHIPKKD 230
Query: 286 ESSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
S ++KA +YVKN+P D T D+ +ELF G +T + + G+ R +GFV+
Sbjct: 231 RQSKFEEMKANFTNIYVKNIPADATDDQFRELFEKFGDVTSASLARDEAGKNRG-FGFVN 289
Query: 342 FAERSSAMKALKNTEKYEIDGQVL 365
F A A+ + GQ L
Sbjct: 290 FINHEHASAAVDELNGKDFMGQDL 313
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + +SG +KGY FV + T E ASQAI+ +
Sbjct: 152 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DESGNSKGYGFVHYETDEAASQAIKHV 210
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ K +A +++ N+P + +D R+ K G V
Sbjct: 211 NGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPADATDDQFRELFEKFG-DV 269
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D A +NRGF F+ + NH A + +++ F D V A ++
Sbjct: 270 TSASLARD--EAGKNRGFGFVNFINHEHASAAVDELNGKDFMGQDL--YVGRAQKKHERE 325
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL D+ ++L+ELFA +G IT +
Sbjct: 326 EELRKSYEAARIEKASKYQGVNLYVKNLEDDVDDEKLRELFAPYGAITSAKV 377
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 85 AQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKS 142
A KH +G E KV +K + ++ + + + +Y+ IP DA+DD R +
Sbjct: 206 AIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPADATDDQFRELFEK 265
Query: 143 IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G+VT + + ++G+ +G+ FV F E AS A++ELN + G+ + AQ KH
Sbjct: 266 FGDVTSASLAR-DEAGKNRGFGFVNFINHEHASAAVDELNGKDFMGQDLYVGRAQKKH 322
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 123/273 (45%), Gaps = 18/273 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + +Y+G + ++ L IG V +R+ + + + GYA+V F
Sbjct: 35 PSPSASLYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGE 94
Query: 176 QAIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+E LN +KGK + +Q L FI N+ + + + G +
Sbjct: 95 RALESLNYTLIKGKPCRIMWSQRDPSLRKTGSGNVFIKNLDTSIDNKALHDTFSAFG-NI 153
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ D + ++G+ F+ Y A+ + + + L+D V PR
Sbjct: 154 LSCKIALD--ESGNSKGYGFVHYETEEAADNAIKHVDG--MLLNDKKVYVGRHIPRKERQ 209
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
+ Q++A +YVKNL + I ++ KE+F+ G IT ++ + G+ + +GF++F
Sbjct: 210 AKIEQIRAKFTNVYVKNLDESINDEQFKEMFSKFGPITSALVQTDEEGKSKG-FGFINFE 268
Query: 344 ERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
A KA+ + E +G+ L + A+ + ++
Sbjct: 269 NYEDAHKAVDTLNETEHNGKTLYVARAQKKTER 301
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 122/280 (43%), Gaps = 39/280 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +I +SG +KGY FV + T+E A AI+ +
Sbjct: 129 VFIKNLDTSIDNKALHDTFSAFGNILSCKIAL-DESGNSKGYGFVHYETEEAADNAIKHV 187
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+ L KK+ K +AK +++ N+ + ++ ++ +K GP
Sbjct: 188 DGMLLNDKKVYVGRHIPRKERQAKIEQIRAKFTNVYVKNLDESINDEQFKEMFSKFGP-- 245
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
I+ LV+ + +++GF FI + N+ A + ++ + + N T+ A +
Sbjct: 246 ITSALVQTDEEG-KSKGFGFINFENYEDAHKAVDTLN----ETEHNGKTLYVARAQKKTE 300
Query: 285 -------------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPG 331
E A Q LY+KNL DI ++L++ F+ +G IT + + G
Sbjct: 301 REEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDEKLRQEFSVYGVITSAKVMCDEKG 360
Query: 332 QERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
+ +GFV F+ A KA+ I + + +LA+
Sbjct: 361 TSKG-FGFVCFSSPDEATKAVTEMNGRMIGSKPIYVALAQ 399
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 70 VEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKK-------HAELLALPPH-GSE 121
E E+ VD ++ +H + + VA + K E+++ A+L L + G
Sbjct: 267 FENYEDAHKAVDTLNETEH--NGKTLYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVN 324
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+ + D D+ LR G +T ++M + G +KG+ FV F + + A++A+ E+
Sbjct: 325 LYIKNLDDDIDDEKLRQEFSVYGVITSAKVM-CDEKGTSKGFGFVCFSSPDEATKAVTEM 383
Query: 182 NSCELKGKKIKCSAAQAK 199
N + K I + AQ K
Sbjct: 384 NGRMIGSKPIYVALAQRK 401
>gi|324507276|gb|ADY43089.1| RNA-binding motif, single-stranded-interacting protein 1 [Ascaris
suum]
Length = 673
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 77/138 (55%), Gaps = 5/138 (3%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + VY+ G+ + +D+DLR C G + + + K +G+ KGY FV F + E A
Sbjct: 296 PLSSTNVYIRGLDPNTTDEDLRQKCDQYGVILSTKAIMDKATGQCKGYGFVDFESAEAAM 355
Query: 176 QAIEELNS-CELKGKKIKCSAAQAKH---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+A+E LN +++ + K S AQ + L+ N+P N+ E D++K + + G VIS
Sbjct: 356 RAVEGLNQEGKVQAQMAKVSIAQQEQDPTNLYFANLPANFTEQDLQKTLERFG-MVISTR 414
Query: 232 LVKDPQNANQNRGFAFIE 249
++K+ A++ GFA ++
Sbjct: 415 ILKNQDGASRGVGFARMD 432
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y +P + ++ DL+ + G V RI+K +D G ++G F KEL Q I
Sbjct: 384 TNLYFANLPANFTEQDLQKTLERFGMVISTRILKNQD-GASRGVGFARMDKKELCDQIIR 442
Query: 180 ELN 182
E+N
Sbjct: 443 EMN 445
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 116/237 (48%), Gaps = 24/237 (10%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + +D L G+V VR+ + + + GY +V + + A++A++
Sbjct: 18 ASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 77
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
LN L GK I+ + HR +FI N+ ++ + + G ++
Sbjct: 78 LLNFTPLNGKPIRIMYS---HRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFG-NIL 133
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ DP + Q++G+ F+++ N A+ + K++ ++D V + +
Sbjct: 134 SCKIATDP--SGQSKGYGFVQFDNEESAQNAIDKLNG--MLINDKQVYVGQFLRKQERET 189
Query: 289 AASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHF 342
A ++ K +YVKNL + T++ LK +F G IT VV+ + G +S+ +GFV+F
Sbjct: 190 ALNKTKFNNVYVKNLSESTTEEDLKNIFGEFGIITSVVV--MRDGDGKSKCFGFVNF 244
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 85/367 (23%), Positives = 148/367 (40%), Gaps = 59/367 (16%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +++ + + L + G + +I SG++KGY FV F +E A AI+
Sbjct: 106 ANIFIKNLDKSIDNKALHDTFSAFGNILSCKIAT-DPSGQSKGYGFVQFDNEESAQNAID 164
Query: 180 ELNSCELKGKKIKCSAAQAK------------HRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+LN + K++ K + +++ N+ + E+D++ + G +
Sbjct: 165 KLNGMLINDKQVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIFGEFGI-I 223
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR---- 283
S+ +++D +++ F F+ + N A + + ++ KF D+ V A +
Sbjct: 224 TSVVVMRD--GDGKSKCFGFVNFENADDAAEAVEALNGKKF--DEKEWYVGKAQKKYERE 279
Query: 284 -----NAESSAASQVKA-----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
E S V LY+KNL I D+LKELF+ G IT + G
Sbjct: 280 LELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGIS 339
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT- 392
R GFV F+ A +AL + + L +LA+ + +++ +Q S + P
Sbjct: 340 RGS-GFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQRKEERRAR--LQAQFSQMRPVS 396
Query: 393 -----------YPP-------HLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMA 434
YPP L YG A AG+ G+ Q +V G PGG
Sbjct: 397 MAPSVAPRMPMYPPGAPGLGQQLFYGQGPPAIIPPQAGF---GYQQQLV--PGMRPGGAP 451
Query: 435 MLPMLLP 441
M +P
Sbjct: 452 MPNFFVP 458
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 114/234 (48%), Gaps = 18/234 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + +D L G+V VR+ + + + GY +V + + A++A++
Sbjct: 18 ASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALD 77
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN L GK I+ + +FI N+ ++ + + G ++S +
Sbjct: 78 LLNFTPLNGKPIRIMYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFG-NILSCK 136
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ DP + Q++G+ F+++ N A+ + K++ ++D V + +A +
Sbjct: 137 IATDP--SGQSKGYGFVQFDNEESAQNAIDKLNG--MLINDKQVYVGQFLRKQERETALN 192
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHF 342
+ K +YVKNL + T++ LK +F G IT VV+ + G +S+ +GFV+F
Sbjct: 193 KTKFNNVYVKNLSESTTEEDLKNIFGEFGIITSVVV--MRDGDGKSKCFGFVNF 244
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 85/367 (23%), Positives = 148/367 (40%), Gaps = 59/367 (16%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +++ + + L + G + +I SG++KGY FV F +E A AI+
Sbjct: 106 ANIFIKNLDKSIDNKALHDTFSAFGNILSCKIAT-DPSGQSKGYGFVQFDNEESAQNAID 164
Query: 180 ELNSCELKGKKIKCSAAQAK------------HRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+LN + K++ K + +++ N+ + E+D++ + G +
Sbjct: 165 KLNGMLINDKQVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEEDLKNIFGEFGI-I 223
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR---- 283
S+ +++D +++ F F+ + N A + + ++ KF D+ V A +
Sbjct: 224 TSVVVMRD--GDGKSKCFGFVNFENADDAAEAVEALNGKKF--DEKEWYVGKAQKKYERE 279
Query: 284 -----NAESSAASQVKA-----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
E S V LY+KNL I D+LKELF+ G IT + G
Sbjct: 280 LELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGIS 339
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT- 392
R GFV F+ A +AL + + L +LA+ + +++ +Q S + P
Sbjct: 340 RGS-GFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQRKEERRAR--LQAQFSQMRPVS 396
Query: 393 -----------YPP-------HLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMA 434
YPP L YG A AG+ G+ Q +V G PGG
Sbjct: 397 MAPSVAPRMPMYPPGAPGLGQQLFYGQGPPAIIPPQAGF---GYQQQLV--PGMRPGGAP 451
Query: 435 MLPMLLP 441
M +P
Sbjct: 452 MPNFFVP 458
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 123/258 (47%), Gaps = 24/258 (9%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + +D L +G+V VR+ + S + GY +V + AS+A++
Sbjct: 29 TSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALD 88
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
LN L G I+ + HR +FI N+ + + + G ++
Sbjct: 89 VLNFTPLNGNPIRVMYS---HRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFG-SIL 144
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ D ++ Q++GF F+++ A + +K++ L+D V + S
Sbjct: 145 SCKVATD--SSGQSKGFGFVQFDTEEAALKAIEKLNG--MLLNDKQVFVGPFLRKQERES 200
Query: 289 AASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAER 345
+ + K ++VKNL + +++ LK +F G IT VV+ + G+ +S+ +GFV+F
Sbjct: 201 VSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVV--MRDGEGKSKCFGFVNFENA 258
Query: 346 SSAMKALKNTEKYEIDGQ 363
A ++++ ++DG+
Sbjct: 259 DDAARSVEALNGKKVDGK 276
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 119/275 (43%), Gaps = 33/275 (12%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
I H A D F G + ++ SG++KG+ FV F T+E A +AIE+LN L
Sbjct: 128 IDHKALHDTFSAF----GSILSCKVAT-DSSGQSKGFGFVQFDTEEAALKAIEKLNGMLL 182
Query: 187 KGKKI------------KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
K++ S + +F+ N+ E+D++ + GP + S+ +++
Sbjct: 183 NDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGP-ITSVVVMR 241
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAPTVSWADP 282
D + +++ F F+ + N A S + ++ K K + S +
Sbjct: 242 DGEG--KSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQ 299
Query: 283 RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHF 342
E++ Q LYVKNL I D+LKELF G IT + G R GFV F
Sbjct: 300 SVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDPNGISRGS-GFVAF 358
Query: 343 AERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ A +AL I + L +LA+ + D++
Sbjct: 359 SSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRR 393
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 129/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN D+ RLKELF+ +GK V + G+ + +GFV F +
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKG-FGFVSFEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ +I+G+++ A+ + +++
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQ 273
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 129/285 (45%), Gaps = 39/285 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T++ A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQDAADRAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+G+D +++ +K G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYG-KT 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS----NPKF--------KLDDNAP 275
+S++++ DP + +++GF F+ + H A + ++M+ N K K++ A
Sbjct: 218 LSVKVMTDP--SGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E + Q LY+KNL I ++L++ F+ G IT AK E
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS-----AKVMLEDG 330
Query: 336 R---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
R +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 331 RSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 29/200 (14%)
Query: 75 ETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDD 134
ET+D D + + + KV K++ AEL A + VY+ D D
Sbjct: 146 ETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDG 205
Query: 135 DLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194
L+ G+ V++M SG++KG+ FV+F E A++A+EE+N ++ GK +
Sbjct: 206 RLKELFSKYGKTLSVKVMT-DPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVG 264
Query: 195 AAQAK------------------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISI 230
AQ K L+I N+ ++ +RK + G +
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAK 324
Query: 231 ELVKDPQNANQNRGFAFIEY 250
+++D +++GF F+ +
Sbjct: 325 VMLED----GRSKGFGFVCF 340
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + + A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPDEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|340712736|ref|XP_003394911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Bombus
terrestris]
Length = 270
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P G EV+ G IP D +D+L + G++ ++R+M +G +GYAF+TF +E A
Sbjct: 159 PGTGCEVFCGKIPKDMYEDELIPLFEKCGKIWDLRLMMDPMAGCNRGYAFITFTNREAAQ 218
Query: 176 QAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKI 223
QA+ EL++ E+K GK +K + + RLF+GN+P++ G++++ + K+
Sbjct: 219 QAVRELDNHEIKPGKNLKVNISVPNLRLFVGNIPKSKGKEEILEEFGKL 267
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 18/121 (14%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+F G +P++ ED++ K G + + L+ DP A NRG+AFI + N A+ + +
Sbjct: 165 VFCGKIPKDMYEDELIPLFEKCGK-IWDLRLMMDPM-AGCNRGYAFITFTNREAAQQAVR 222
Query: 262 KMSNPKFKLDDNAPT-VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
++ N + K N +S + R L+V N+PK ++ + E F GK+
Sbjct: 223 ELDNHEIKPGKNLKVNISVPNLR------------LFVGNIPKSKGKEEILEEF---GKL 267
Query: 321 T 321
T
Sbjct: 268 T 268
>gi|332208761|ref|XP_003253477.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 590
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 119/258 (46%), Gaps = 19/258 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N LKG+ I+ +Q +FI N+ + + + G ++S +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+ D + RGF F+ + H A+ + M+ L+D V R AE
Sbjct: 130 VACDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDRKVFVGHFKSRREREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +YVKNLP D+ + L++LF+ GK+ V + G R +GFV+F +
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVL 365
A KA+ + E+ G++L
Sbjct: 244 AQKAVVHMNGKEVSGRLL 261
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV +++ AEL A + +Y+ +P D + L+ G++ V++M+
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR-D 225
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
+SG ++ + FV F E A +A+ +N E+ G+ + AQ +
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKR 269
>gi|3287682|gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana [Arabidopsis thaliana]
Length = 655
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 130/281 (46%), Gaps = 43/281 (15%)
Query: 130 DASDDDLRHF--CKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
DAS D+ F S G + ++ +G +KGY FV F +E A AI++LN +
Sbjct: 144 DASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMN 202
Query: 188 GKKIKCSAA---QAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
K++ Q + R +++ N+P+ GED++RK K G VIS +V
Sbjct: 203 DKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFG--VISSAVV 260
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
Q+ N +R F F+ + A + +KM+ L D+ V A ++
Sbjct: 261 MRDQSGN-SRCFGFVNFECTEAAASAVEKMNG--ISLGDDVLYVGRAQKKSEREEELRRK 317
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQERSR- 336
SQ LY+KNL + ++LKE+F+ +G +T KV++ P Q SR
Sbjct: 318 FEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP----QGMSRG 373
Query: 337 YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+GFV ++ A++AL I + L +LA+ + D++
Sbjct: 374 FGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRR 414
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 121/269 (44%), Gaps = 19/269 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y G + ++ L K + V VR+ + ++ + GYA++ F A +A+E
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAME 107
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN L + I+ + K +FI N+ + + + + G ++S +
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFG-TILSCK 166
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA----ES 287
+ D +++G+ F+++ A+ + K++ ++D V R E+
Sbjct: 167 VAMDV--TGRSKGYGFVQFEKEESAQAAIDKLNG--MLMNDKQVFVGHFIRRQERARDEN 222
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+ + +YVKNLPK+I +D L++ F G I+ V+ + G R +GFV+F +
Sbjct: 223 TPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRC-FGFVNFECTEA 281
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
A A++ + VL A+ ++++
Sbjct: 282 AASAVEKMNGISLGDDVLYVGRAQKKSER 310
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 91/208 (43%), Gaps = 32/208 (15%)
Query: 69 EVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIP 128
+ E+EE + +D ++ D+++ V + E+ + P + VY+ +P
Sbjct: 182 QFEKEESAQAAIDKLNGMLM--NDKQVFVGHFIRRQERARDENTPT--PRFTNVYVKNLP 237
Query: 129 HDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG 188
+ +D+LR G ++ +M+ + SG ++ + FV F E A+ A+E++N L
Sbjct: 238 KEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISLGD 296
Query: 189 KKIKCSAAQAKH------------------------RLFIGNVPRNWGEDDMRKAVTKIG 224
+ AQ K L++ N+ + ++ +++ ++ G
Sbjct: 297 DVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYG 356
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYN 252
V S +++ +PQ +RGF F+ Y N
Sbjct: 357 -NVTSSKVMLNPQ--GMSRGFGFVAYSN 381
>gi|348582138|ref|XP_003476833.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Cavia porcellus]
Length = 482
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 125/257 (48%), Gaps = 17/257 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + DA++D L G V +RI + + GYA+V F A +A++
Sbjct: 122 ASLYVGDLHADATEDLLFRKFSXAGPVLSIRICRDVATRRPLGYAYVNFLRPADAQKALD 181
Query: 180 ELNSCELKGKKIK--------CSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N ++GK I+ C + I N+ R+ + + + G ++S +
Sbjct: 182 TMNFDAVEGKPIRLMWSQRDACLRKSGVGNVIIKNLDRSVDNKTLYEHFSGFGR-ILSSK 240
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES---S 288
++ D Q ++G+AF+ + + + A+ + Q+M N K D + R+ E+ +
Sbjct: 241 VMSDDQG---SKGYAFVHFQSQSAADCAIQEM-NGKVIRDRQVLVAPFRSRRDREAELRT 296
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
S+ +YVKN +D+ +RL+ +F+ +G+ V + G+ + +GFV F +A
Sbjct: 297 RTSEFTNVYVKNFGEDMDDERLQGVFSKYGRTLSVKVMTDSSGKSKG-FGFVSFDSHEAA 355
Query: 349 MKALKNTEKYEIDGQVL 365
KA++ +I+GQ++
Sbjct: 356 KKAVEEMNGKDINGQLV 372
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 122/266 (45%), Gaps = 42/266 (15%)
Query: 138 HFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS--- 194
HF G + ++M D +KGYAFV F+++ A AI+E+N ++ +++ +
Sbjct: 229 HF-SGFGRILSSKVMS--DDQGSKGYAFVHFQSQSAADCAIQEMNGKVIRDRQVLVAPFR 285
Query: 195 -----AAQAKHRL--FIGNVPRNWGED----DMRKAVTKIGPGVISIELVKDPQNANQNR 243
A+ + R F +N+GED ++ +K G +S++++ D ++ +++
Sbjct: 286 SRRDREAELRTRTSEFTNVYVKNFGEDMDDERLQGVFSKYGR-TLSVKVMTD--SSGKSK 342
Query: 244 GFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAA------------- 290
GF F+ + +H A+ + ++M+ D N V + E A
Sbjct: 343 GFGFVSFDSHEAAKKAVEEMNGK----DINGQLVFVGRAQKKEERQAELKQVFEELKRDG 398
Query: 291 ---SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
Q LY+KNL + DRL+ F+ G I++V + + GQ R +G V F+
Sbjct: 399 ARRCQGVKLYIKNLDDTVDDDRLRRAFSSFGSISRVKVME-EEGQ-RKGFGLVCFSSPEE 456
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQ 373
A KA+ + + L+ +LAK Q
Sbjct: 457 AAKAMTQMNGRVLGSKPLNIALAKRQ 482
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
+ + AEL + VY+ D D+ L+ G V++M SG++KG+ F
Sbjct: 288 RDREAELRTRTSEFTNVYVKNFGEDMDDERLQGVFSKYGRTLSVKVMT-DSSGKSKGFGF 346
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH------------------------R 201
V+F + E A +A+EE+N ++ G+ + AQ K +
Sbjct: 347 VSFDSHEAAKKAVEEMNGKDINGQLVFVGRAQKKEERQAELKQVFEELKRDGARRCQGVK 406
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ +D +R+A + G SI VK + Q +GF + +
Sbjct: 407 LYIKNLDDTVDDDRLRRAFSSFG----SISRVKVMEEEGQRKGFGLVCF 451
>gi|356521983|ref|XP_003529629.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 397
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/283 (20%), Positives = 129/283 (45%), Gaps = 34/283 (12%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++G + + ++ L GEV V++++ K + +++GY F+ F ++ A + ++
Sbjct: 63 LWIGDLQYWMDENYLYTCLAHTGEVASVKVIRNKQTSQSEGYGFIEFTSRAGAERVLQTY 122
Query: 182 NSCEL--KGKKIKCSAAQAK-----------HRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
N + G+ + + A H +F+G++ + + +++ P +
Sbjct: 123 NGTIMPNGGQNFRLNWATLSAGERRHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSIK 182
Query: 229 SIELVKDPQNANQNRGFAFIEYYN-----HACAEYSRQKMSNPKFKL---------DDNA 274
++V D + + +G+ F+ + + A E S ++ +
Sbjct: 183 GAKVVID-RLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPSTQSQ 241
Query: 275 PTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 334
P S+ +P+ A++ ++V NL ++T D L+++F H+G++ V IP K
Sbjct: 242 PKASYQNPQGAQNEHDPNNTTIFVGNLDPNVTDDHLRQVFGHYGELVHVKIPAGK----- 296
Query: 335 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
R GFV FA+RS A +AL+ + GQ + S + ++++
Sbjct: 297 -RCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQ 338
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
P+ + +++G + + +DD LR GE+ V+I GK G FV F + A +
Sbjct: 258 PNNTTIFVGNLDPNVTDDHLRQVFGHYGELVHVKIPAGKRCG------FVQFADRSCAEE 311
Query: 177 AIEELNSCELKGKKIKCSAAQA 198
A+ LN L G+ ++ S ++
Sbjct: 312 ALRVLNGTLLGGQNVRLSWGRS 333
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 130/281 (46%), Gaps = 43/281 (15%)
Query: 130 DASDDDLRHF--CKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
DAS D+ F S G + ++ +G +KGY FV F +E A AI++LN +
Sbjct: 144 DASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMN 202
Query: 188 GKKIKCSAA---QAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
K++ Q + R +++ N+P+ GED++RK K G VIS +V
Sbjct: 203 DKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFG--VISSAVV 260
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
Q+ N +R F F+ + A + +KM+ L D+ V A ++
Sbjct: 261 MRDQSGN-SRCFGFVNFECTEAAASAVEKMNG--ISLGDDVLYVGRAQKKSEREEELRRK 317
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQERSR- 336
SQ LY+KNL + ++LKE+F+ +G +T KV++ P Q SR
Sbjct: 318 FEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP----QGMSRG 373
Query: 337 YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+GFV ++ A++AL I + L +LA+ + D++
Sbjct: 374 FGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRR 414
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 121/269 (44%), Gaps = 19/269 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y G + ++ L K + V VR+ + ++ + GYA++ F A +A+E
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAME 107
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN L + I+ + K +FI N+ + + + + G ++S +
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFG-TILSCK 166
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA----ES 287
+ D +++G+ F+++ A+ + K++ ++D V R E+
Sbjct: 167 VAMDV--TGRSKGYGFVQFEKEESAQAAIDKLNG--MLMNDKQVFVGHFIRRQERARDEN 222
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+ + +YVKNLPK+I +D L++ F G I+ V+ + G R +GFV+F +
Sbjct: 223 TPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRC-FGFVNFECTEA 281
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
A A++ + VL A+ ++++
Sbjct: 282 AASAVEKMNGISLGDDVLYVGRAQKKSER 310
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 91/208 (43%), Gaps = 32/208 (15%)
Query: 69 EVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIP 128
+ E+EE + +D ++ D+++ V + E+ + P + VY+ +P
Sbjct: 182 QFEKEESAQAAIDKLNGMLM--NDKQVFVGHFIRRQERARDENTPT--PRFTNVYVKNLP 237
Query: 129 HDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG 188
+ +D+LR G ++ +M+ + SG ++ + FV F E A+ A+E++N L
Sbjct: 238 KEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISLGD 296
Query: 189 KKIKCSAAQAKH------------------------RLFIGNVPRNWGEDDMRKAVTKIG 224
+ AQ K L++ N+ + ++ +++ ++ G
Sbjct: 297 DVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYG 356
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYN 252
V S +++ +PQ +RGF F+ Y N
Sbjct: 357 -NVTSSKVMLNPQ--GMSRGFGFVAYSN 381
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 113/251 (45%), Gaps = 18/251 (7%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G + +D L G+V VR+ + S + GYA+V F A++A+E L
Sbjct: 41 LYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELL 100
Query: 182 NSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
N L GK I+ S +FI N+ + + + G ++S ++
Sbjct: 101 NFAPLNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFG-NILSCKVA 159
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE---SSAA 290
D Q++GF F++Y A+ + + ++ L ++ P R E S
Sbjct: 160 TD--EMGQSKGFGFVQYDKGEAAQSAIKSLNG---MLINDKPVYVGPFLRKQERENSVDK 214
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
++ ++VKNL + T++ L ++F +G IT VI G+ R +GF++F A +
Sbjct: 215 TKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRC-FGFINFKSPDDAAR 273
Query: 351 ALKNTEKYEID 361
A++ +I+
Sbjct: 274 AVEELNGKKIN 284
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 102/428 (23%), Positives = 170/428 (39%), Gaps = 89/428 (20%)
Query: 95 MKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG 154
++V S++D ++ + +++ + L + G + ++
Sbjct: 110 IRVMYSNRDPSSRRSGS--------ANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVAT- 160
Query: 155 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------HRL 202
+ G++KG+ FV + E A AI+ LN + K + K + +
Sbjct: 161 DEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERENSVDKTKFNNV 220
Query: 203 FIGNVPRNWGEDDMRK---AVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 259
F+ N+ + ++D+ K A I VI + + ++R F FI + + A +
Sbjct: 221 FVKNLSESTTKEDLVKIFGAYGNITSAVIMVGM------DGKSRCFGFINFKSPDDAARA 274
Query: 260 RQKMSNPKFKLDDNAPTVSWADP---------RNAESS---AASQVKAL--YVKNLPKDI 305
++++ K ++D V A R E S AA + + L Y+KNL I
Sbjct: 275 VEELNGKK--INDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSI 332
Query: 306 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEK--YEIDGQ 363
D+L ELF+++GKIT I G + GFV F S + ++ TE I G+
Sbjct: 333 GDDQLCELFSNYGKITSCKIMRDANGVSKGS-GFVAF----STLPFIQLTEMNGKMISGK 387
Query: 364 VLDCSLAKPQADQKTSGGSNSQKSALNPT------------YPP------HLGYGMVGGA 405
L + A+ + D+K +Q S + P YPP L YG A
Sbjct: 388 PLYVAFAQRKEDRKAM--LQAQFSQVRPVPMTPSMAPRLPMYPPMAPLGQQLFYGQAPPA 445
Query: 406 YGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRS 465
G+ GF Q +V G PGG M P+ + P VQQ P+P
Sbjct: 446 IMPPQPGF---GFQQQLV--PGMRPGGAHM-----PNYFV------PVVQQGQQGPRPGI 489
Query: 466 GRGGAGSS 473
R GAGS+
Sbjct: 490 RRSGAGSA 497
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 116/261 (44%), Gaps = 17/261 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 51 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KGK + +Q + +FI N+ + G ++
Sbjct: 111 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 169
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L++ V + S
Sbjct: 170 SCKVAQD--EFGNSKGYGFVHYETAEAATNAIKHVNG--MLLNEKKVFVGHHIAKKDRQS 225
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +YVKNL ++T + +ELF +G+IT + + +GFV+F
Sbjct: 226 KFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVN 285
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
SA A+++ E GQ L
Sbjct: 286 HDSAAAAVEDLNDKEYKGQKL 306
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 29/230 (12%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 144 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAATNAIKHV 202
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ AK +++ N+ ++ R+ K G +
Sbjct: 203 NGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGE-I 261
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACA----------EYSRQKM--SNPKFKLDDNAP 275
S L +D + ++RGF F+ + NH A EY QK+ + K +
Sbjct: 262 TSASLSRDNETG-KSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEE 320
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
+ E ++ Q LYVKNL DI ++L++LF G IT +
Sbjct: 321 LRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFIGFGNITSARV 370
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 84 DAQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCK 141
+A KH +G E KV +K + ++ + + + VY+ + + ++++ R +
Sbjct: 197 NAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFE 256
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
GE+T + + ++G+++G+ FV F + A+ A+E+LN E KG+K+ AQ KH
Sbjct: 257 KYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKH 315
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 116/257 (45%), Gaps = 19/257 (7%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G + ++ L SIG+V +R+ + + + GYA+V + +A+EEL
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNVAGDGERALEEL 114
Query: 182 NSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
N +KG+ + +Q + +FI N+ + G ++S ++
Sbjct: 115 NYTLIKGRPCRIMWSQRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAAFG-NILSCKVA 173
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPK-FKLDDNAPTVSWADPRNAESSAASQ 292
+D +NAN ++G+ F+ Y AE + Q + N L++ V P+ S +
Sbjct: 174 QD-ENAN-SKGYGFVHY---ETAEAANQAIKNVNGMLLNEKKVFVGHHIPKKDRMSKVEE 228
Query: 293 VKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
+KA +YVKN+ + T + +ELF +G IT + + +GFV++ A
Sbjct: 229 MKANFTNIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRHEDA 288
Query: 349 MKALKNTEKYEIDGQVL 365
KA++ + GQ L
Sbjct: 289 YKAVEELNDSDFKGQKL 305
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 104/232 (44%), Gaps = 33/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + +++ +KGY FV + T E A+QAI+ +
Sbjct: 143 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDENA-NSKGYGFVHYETAEAANQAIKNV 201
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ K +A +++ N+ +++ R+ K G +
Sbjct: 202 NGMLLNEKKVFVGHHIPKKDRMSKVEEMKANFTNIYVKNIDSETTDNEFRELFEKYGD-I 260
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L D ++ +NRGF F+ Y H A + +++++ FK V A ++
Sbjct: 261 TSASLAHDNESG-KNRGFGFVNYIRHEDAYKAVEELNDSDFK--GQKLYVGRAQKKHERE 317
Query: 285 ----AESSAASQVKA-------LYVKNLPKDITQDRLKELFAHHGKITKVVI 325
+ AA Q K+ LYVKNL +I D L+++F +G IT +
Sbjct: 318 EELRKQYEAARQEKSAKYTGVNLYVKNLADEIDDDELRKVFEPYGAITSAKV 369
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 73/155 (47%), Gaps = 25/155 (16%)
Query: 105 EKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYA 164
+K + +++ + + + +Y+ I + +D++ R + G++T + +SG+ +G+
Sbjct: 219 KKDRMSKVEEMKANFTNIYVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFG 278
Query: 165 FVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH------------------------ 200
FV + E A +A+EELN + KG+K+ AQ KH
Sbjct: 279 FVNYIRHEDAYKAVEELNDSDFKGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYTGV 338
Query: 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L++ N+ +D++RK G + S ++++D
Sbjct: 339 NLYVKNLADEIDDDELRKVFEPYG-AITSAKVMRD 372
>gi|297845300|ref|XP_002890531.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297336373|gb|EFH66790.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 130/281 (46%), Gaps = 43/281 (15%)
Query: 130 DASDDDLRHF--CKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
DAS D+ F S G + ++ +G +KGY FV F +E A AI++LN +
Sbjct: 144 DASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMN 202
Query: 188 GKKIKCSAA---QAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
K++ Q + R +++ N+P+ GED++RK K G VIS +V
Sbjct: 203 DKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFG--VISSAVV 260
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
Q+ N +R F F+ + A + +KM+ L D+ V A ++
Sbjct: 261 MRDQSGN-SRCFGFVNFECTEAAASAVEKMNG--ISLGDDVLYVGRAQKKSEREEELRRK 317
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQERSR- 336
SQ LY+KNL + ++LKE+F+ +G +T KV++ P Q SR
Sbjct: 318 FEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP----QGLSRG 373
Query: 337 YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+GFV ++ A++AL I + L +LA+ + D++
Sbjct: 374 FGFVAYSNPEEALRALSEMNGKMIGKKPLYIALAQRKEDRR 414
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 121/269 (44%), Gaps = 19/269 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y G + ++ L K + V VR+ + ++ + GYA++ F A +A+E
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAME 107
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN L + I+ + K +FI N+ + + + + G ++S +
Sbjct: 108 ALNYTPLFERPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFG-TILSCK 166
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA----ES 287
+ D +++G+ F+++ A+ + K++ ++D V R E+
Sbjct: 167 VAMD--VTGRSKGYGFVQFEKEESAQAAIDKLNG--MLMNDKQVFVGHFIRRQERARDEN 222
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+ + +YVKNLPK+I +D L++ F G I+ V+ + G R +GFV+F +
Sbjct: 223 TPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRC-FGFVNFECTEA 281
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
A A++ + VL A+ ++++
Sbjct: 282 AASAVEKMNGISLGDDVLYVGRAQKKSER 310
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 91/208 (43%), Gaps = 32/208 (15%)
Query: 69 EVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIP 128
+ E+EE + +D ++ D+++ V + E+ + P + VY+ +P
Sbjct: 182 QFEKEESAQAAIDKLNGM--LMNDKQVFVGHFIRRQERARDENTPT--PRFTNVYVKNLP 237
Query: 129 HDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG 188
+ +D+LR G ++ +M+ + SG ++ + FV F E A+ A+E++N L
Sbjct: 238 KEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISLGD 296
Query: 189 KKIKCSAAQAKH------------------------RLFIGNVPRNWGEDDMRKAVTKIG 224
+ AQ K L++ N+ + ++ +++ ++ G
Sbjct: 297 DVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYG 356
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYN 252
V S +++ +PQ +RGF F+ Y N
Sbjct: 357 -NVTSSKVMLNPQGL--SRGFGFVAYSN 381
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 130/281 (46%), Gaps = 43/281 (15%)
Query: 130 DASDDDLRHF--CKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
DAS D+ F S G + ++ +G +KGY FV F +E A AI++LN +
Sbjct: 144 DASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMN 202
Query: 188 GKKIKCSAA---QAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
K++ Q + R +++ N+P+ GED++RK K G VIS +V
Sbjct: 203 DKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFG--VISSAVV 260
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
Q+ N +R F F+ + A + +KM+ L D+ V A ++
Sbjct: 261 MRDQSGN-SRCFGFVNFECTEAAASAVEKMNG--ISLGDDVLYVGRAQKKSEREEELRRK 317
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQERSR- 336
SQ LY+KNL + ++LKE+F+ +G +T KV++ P Q SR
Sbjct: 318 FEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP----QGMSRG 373
Query: 337 YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+GFV ++ A++AL I + L +LA+ + D++
Sbjct: 374 FGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRR 414
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 121/269 (44%), Gaps = 19/269 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y G + ++ L K + V VR+ + ++ + GYA++ F A +A+E
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAME 107
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN L + I+ + K +FI N+ + + + + G ++S +
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFG-TILSCK 166
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA----ES 287
+ D +++G+ F+++ A+ + K++ ++D V R E+
Sbjct: 167 VAMDV--TGRSKGYGFVQFEKEESAQAAIDKLNG--MLMNDKQVFVGHFIRRQERARDEN 222
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+ + +YVKNLPK+I +D L++ F G I+ V+ + G R +GFV+F +
Sbjct: 223 TPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRC-FGFVNFECTEA 281
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
A A++ + VL A+ ++++
Sbjct: 282 AASAVEKMNGISLGDDVLYVGRAQKKSER 310
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 91/208 (43%), Gaps = 32/208 (15%)
Query: 69 EVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIP 128
+ E+EE + +D ++ D+++ V + E+ + P + VY+ +P
Sbjct: 182 QFEKEESAQAAIDKLNGMLM--NDKQVFVGHFIRRQERARDENTPT--PRFTNVYVKNLP 237
Query: 129 HDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKG 188
+ +D+LR G ++ +M+ + SG ++ + FV F E A+ A+E++N L
Sbjct: 238 KEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISLGD 296
Query: 189 KKIKCSAAQAKH------------------------RLFIGNVPRNWGEDDMRKAVTKIG 224
+ AQ K L++ N+ + ++ +++ ++ G
Sbjct: 297 DVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYG 356
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYN 252
V S +++ +PQ +RGF F+ Y N
Sbjct: 357 -NVTSSKVMLNPQ--GMSRGFGFVAYSN 381
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 121/258 (46%), Gaps = 23/258 (8%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + ++ L +G++ +R+ + S + GY +V + A+QA+E
Sbjct: 29 TSLYVGDLEQNVTETQLYDLFNQLGQIVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQALE 88
Query: 180 ELNSCELKGKKIKCSAA--------QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN + GK I+ + ++I N+ + + + G ++S +
Sbjct: 89 VLNFTPVNGKPIRIMYSYRDPTIRKSGAGNIYIKNLDKAIDNKALHDTFSAFG-NILSCK 147
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D +A Q+ G+ F+++ N A+ + K++ L+D V R S
Sbjct: 148 VATD--SAGQSLGYGFVQFDNEESAKNAIDKLNG--MLLNDKQVYVGPFLRRQERESGTD 203
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSA 348
+ K +YVKNL + T++ LK++F +G IT V+ + G +SR +GFV+F A
Sbjct: 204 KTKFNNVYVKNLSETTTEEDLKKIFGEYGAITSAVV--MRDGDGKSRCFGFVNFENPDDA 261
Query: 349 MKALKNTEKYEIDGQVLD 366
++++ ++G+ D
Sbjct: 262 ARSVE-----ALNGKTFD 274
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 92/380 (24%), Positives = 156/380 (41%), Gaps = 50/380 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+ + + L + G + ++ +G++ GY FV F +E A AI++L
Sbjct: 119 IYIKNLDKAIDNKALHDTFSAFGNILSCKVAT-DSAGQSLGYGFVQFDNEESAKNAIDKL 177
Query: 182 NSCELKGKKIKCSAAQAK------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
N L K++ + + +++ N+ E+D++K + G + S
Sbjct: 178 NGMLLNDKQVYVGPFLRRQERESGTDKTKFNNVYVKNLSETTTEEDLKKIFGEYG-AITS 236
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN----- 284
+++D ++R F F+ + N A S + ++ F D+ V A ++
Sbjct: 237 AVVMRD--GDGKSRCFGFVNFENPDDAARSVEALNGKTF--DEKEWYVGKAQKKSEREVE 292
Query: 285 ---------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
E+ + LYVKNL IT D+LKELF+ G IT + G +
Sbjct: 293 LKGQFEQTLKETVDKFEGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDPNGVSKG 352
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPP 395
GFV ++ A KAL I + L +LA+ + +++ +Q S + P P
Sbjct: 353 S-GFVAYSTAEEASKALTEMNGKMIVSKPLYVALAQRKEERRAR--LQAQFSQMRPAMAP 409
Query: 396 HLGYGMVGGAYGALGAGYVPAGFAQPMVYGRG---AAP--GGMAMLPMLLPDGRIGYV-- 448
+G M +G G G Q + YG+G P G L+P R +
Sbjct: 410 AVGPRMPMYPHGTPGIG-------QQLFYGQGPPAIVPPQPGFGYQQQLVPGMRPNFFVP 462
Query: 449 LQQPGVQQHNPPPQPRSGRG 468
+ QPG QQ P RSG G
Sbjct: 463 MVQPG-QQAQRPSGRRSGAG 481
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 116/261 (44%), Gaps = 17/261 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 51 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KGK + +Q + +FI N+ + G ++
Sbjct: 111 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 169
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L++ V + S
Sbjct: 170 SCKVAQD--EFGNSKGYGFVHYETAEAATNAIKHVNG--MLLNEKKVFVGHHIAKKDRQS 225
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +YVKNL ++T + +ELF +G+IT + + +GFV+F
Sbjct: 226 KFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVN 285
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
SA A+++ E GQ L
Sbjct: 286 HDSAAAAVEDLNDKEYKGQKL 306
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 29/230 (12%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 144 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAATNAIKHV 202
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ AK +++ N+ ++ R+ K G +
Sbjct: 203 NGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGE-I 261
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACA----------EYSRQKM--SNPKFKLDDNAP 275
S L +D + ++RGF F+ + NH A EY QK+ + K +
Sbjct: 262 TSASLSRDNETG-KSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEE 320
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
+ E ++ Q LYVKNL DI ++L++LF G IT +
Sbjct: 321 LRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFIGFGNITSARV 370
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 84 DAQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCK 141
+A KH +G E KV +K + ++ + + + VY+ + + ++++ R +
Sbjct: 197 NAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFE 256
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
GE+T + + ++G+++G+ FV F + A+ A+E+LN E KG+K+ AQ KH
Sbjct: 257 KYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKH 315
>gi|403417917|emb|CCM04617.1| predicted protein [Fibroporia radiculosa]
Length = 671
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 119/269 (44%), Gaps = 18/269 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + ++ L IG V +R+ + + + GYA+V + +A+E
Sbjct: 44 ASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 103
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+LN +KG+ + +Q + +FI N+ + G V+S +
Sbjct: 104 QLNYSSIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFG-NVLSCK 162
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D +++G+ F+ Y AE + + ++ L+D V + R S
Sbjct: 163 VATDEH--GRSKGYGFVHYETAEAAETAIKAVNG--MLLNDKKVYVGYHISRKERQSKLE 218
Query: 292 QVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
++KA +YVKN ++T++ LF G +T VI G+ R +GFV+F
Sbjct: 219 EMKAQFTNIYVKNFDPEVTEEEFMALFQQFGSVTSAVIQRDDEGRSRG-FGFVNFEVHDE 277
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
A KA++ + G+ L S A+ +A++
Sbjct: 278 AQKAVEGLHDLDFKGKKLFVSRAQKKAER 306
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ ++L + + +Y+ + ++++ + G VT I + D G ++G+ F
Sbjct: 211 KERQSKLEEMKAQFTNIYVKNFDPEVTEEEFMALFQQFGSVTSAVIQR-DDEGRSRGFGF 269
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V F + A +A+E L+ + KGKK+ S AQ K
Sbjct: 270 VNFEVHDEAQKAVEGLHDLDFKGKKLFVSRAQKK 303
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 112/278 (40%), Gaps = 35/278 (12%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G V ++ + G +KGY FV + T E A AI+ +
Sbjct: 134 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVAT-DEHGRSKGYGFVHYETAEAAETAIKAV 192
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ K +A+ +++ N E++ + G V
Sbjct: 193 NGMLLNDKKVYVGYHISRKERQSKLEEMKAQFTNIYVKNFDPEVTEEEFMALFQQFG-SV 251
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR---- 283
S + +D + ++RGF F+ + H A+ + + + + FK VS A +
Sbjct: 252 TSAVIQRD--DEGRSRGFGFVNFEVHDEAQKAVEGLHDLDFK--GKKLFVSRAQKKAERE 307
Query: 284 ----------NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
E + Q LY+KNL D+ DRL+ F G IT + + G
Sbjct: 308 QELRQSYEQAKMEKMSKFQGVNLYIKNLEDDLDDDRLRTEFEPFGSITSAKVMRDEKGTS 367
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
+ +GFV F+ A KA+ I + L SLA+
Sbjct: 368 KG-FGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQ 404
>gi|321465027|gb|EFX76031.1| hypothetical protein DAPPUDRAFT_23823 [Daphnia pulex]
Length = 177
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Query: 144 GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKHRLF 203
G + E+R++ + +GYAFVTF T E A +A+ +L+ E++G+ +K + ++ RLF
Sbjct: 59 GTIWEIRLIMDTVTNLNRGYAFVTFTTTEAAKEAVNQLHDFEMRGRHMKVRLSVSELRLF 118
Query: 204 IGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKM 263
+GN+P + + ++ K G+ + + K P + +N GF F+EY +H A ++Q++
Sbjct: 119 VGNIPNSKSKVEIMAEFNKFAAGLTEVIIYKSP-DLEENGGFCFLEYDSHKSASMAKQRL 177
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 118/264 (44%), Gaps = 18/264 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + ++ L IG V +R+ + + + GYA+V + A +A+E
Sbjct: 84 TSLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALE 143
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+LN +K K + +Q + +FI N+ + G ++S +
Sbjct: 144 QLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFG-DILSCK 202
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D A+ +G+ F+ Y AE + + ++ +L+D V PR +
Sbjct: 203 VATDEHGAS--KGYGFVHYVTGESAEAAIKGVNG--MQLNDKVVFVGIHVPRRDRQAKID 258
Query: 292 QVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+V++ LY+KNLP + T + L E+F G IT + + G+ R +GFV++ S
Sbjct: 259 EVRSQFTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRG-FGFVNYENHES 317
Query: 348 AMKALKNTEKYEIDGQVLDCSLAK 371
A KA+ + G VL + A+
Sbjct: 318 ASKAVDALHDKDYKGNVLYVARAQ 341
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 90/377 (23%), Positives = 150/377 (39%), Gaps = 46/377 (12%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G++ ++ + G +KGY FV + T E A AI+ +
Sbjct: 174 IFIKNLDETIDNKALHDTFAAFGDILSCKVAT-DEHGASKGYGFVHYVTGESAEAAIKGV 232
Query: 182 NSCELKGKKIKCSA------AQAK--------HRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N +L K + QAK L+I N+P +++ + K GP +
Sbjct: 233 NGMQLNDKVVFVGIHVPRRDRQAKIDEVRSQFTNLYIKNLPTETTTEELNEVFGKFGP-I 291
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S + D ++RGF F+ Y NH A + + + +K N V+ A R
Sbjct: 292 TSAAVQSDEHG--KHRGFGFVNYENHESASKAVDALHDKDYK--GNVLYVARAQKRTERD 347
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
E++ Q LYVKNL + ++L+ F G IT + + G
Sbjct: 348 AELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKDEKGTS 407
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA-KPQADQKTSGGSNSQKSALNPT 392
+ +GFV F+ A KA+ + + L SLA + + ++ SQ+S +
Sbjct: 408 KG-FGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSLAQRKEVRKQQLEAQMSQRSQMRSQ 466
Query: 393 YPPHLGYGMVGGAYGAL-------GAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRI 445
G+ G YGA GA P + M+Y P GM P P G++
Sbjct: 467 Q--IAAAGIPGAPYGAPPNPMYFGGAAAYPPHGGRGMMYPPNGMPAGMPPRPRYAPPGQM 524
Query: 446 GYVLQQPGVQQHNPPPQ 462
+ PG + P PQ
Sbjct: 525 A-PMGMPGGAPYPPHPQ 540
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 90/185 (48%), Gaps = 11/185 (5%)
Query: 195 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHA 254
A+Q L++G + E + + + IGP V SI + +D ++ G+A++ Y N A
Sbjct: 79 ASQPNTSLYVGELDPTVTEAMLYEIFSMIGP-VASIRVCRD-AVTRRSLGYAYVNYLNAA 136
Query: 255 CAEYSRQKMSNPKFKLDDNAPTVSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKE 312
AE + ++++ K + A + W+ DP ++ + +++KNL + I L +
Sbjct: 137 DAERALEQLNYSLIK--NKACRIMWSQRDPSLRKTGQGN----IFIKNLDETIDNKALHD 190
Query: 313 LFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372
FA G I + + G + YGFVH+ SA A+K +++ +V+ + P
Sbjct: 191 TFAAFGDILSCKVATDEHGASKG-YGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVP 249
Query: 373 QADQK 377
+ D++
Sbjct: 250 RRDRQ 254
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 85 AQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIG 144
AQK + D E+K K E++K+ L G +Y+ + + D+ L++ G
Sbjct: 340 AQKRTERDAELK-----KAHEQQKYETTLKY--QGVNLYVKNLDDEYDDEKLQNEFTPFG 392
Query: 145 EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
+T ++MK + G +KG+ FV F + + A++A+ E+N L K + S AQ K
Sbjct: 393 TITSCKVMK-DEKGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSLAQRK 446
>gi|156103277|ref|XP_001617331.1| polyadenylate-binding protein [Plasmodium vivax Sal-1]
gi|148806205|gb|EDL47604.1| polyadenylate-binding protein, putative [Plasmodium vivax]
Length = 883
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 127/258 (49%), Gaps = 24/258 (9%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L ++G V+ +R+ + + ++ GYA+V + A +A++
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
LN +KG+ + + HR +F+ N+ ++ + + G ++
Sbjct: 76 TLNYTNIKGQPARLMWS---HRDPSLRKSGAGNIFVKNLDKSIDNKALFDTFSMFG-NIL 131
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ D +++ + F+ Y + A+ + +K++ +L V ++ ++
Sbjct: 132 SCKVATDE--FGKSKSYGFVHYEDEESAKEAIEKVNG--IQLGSKNVYVGHFIKKSERAT 187
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
++ LYVKN P +T+ LK+LF+ G+IT +++ K + ++ F+++A+ SA
Sbjct: 188 NDTKFTNLYVKNFPDSVTEAHLKQLFSPFGEITSMIV---KTDNKNRKFCFINYADSESA 244
Query: 349 MKALKNTEKYEI--DGQV 364
A++N +I DGQ+
Sbjct: 245 KNAMENLNGKKITDDGQI 262
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 281 DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGF 339
D N ES Q LY+KNL I LKELF +G IT + + +E+S+ +GF
Sbjct: 436 DNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEPYGTITSAKV--MRDDKEQSKGFGF 493
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370
V FA + A +A+ I+G+ L LA
Sbjct: 494 VCFALQEEANRAVTEMHLKIINGKPLYVGLA 524
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D L+ + G +T ++M+ D ++KG+ FV F +E A++A
Sbjct: 447 QGVNLYIKNLDDAIDDQTLKELFEPYGTITSAKVMR-DDKEQSKGFGFVCFALQEEANRA 505
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E++ + GK + A+ +
Sbjct: 506 VTEMHLKIINGKPLYVGLAEKR 527
>gi|440798060|gb|ELR19131.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 560
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 132/291 (45%), Gaps = 25/291 (8%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PP +++ + D S+D L + GEV ++++MK + S + YAFV + + E A+
Sbjct: 122 PPQAC-LFVASLSPDTSEDALHELFATHGEVLKIKLMKDRSS---RPYAFVQYSSTEEAN 177
Query: 176 QAIEELNSCELKGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
A+ N+ L G++++ A+ LFI + R+ +R+AV GP I + ++K+
Sbjct: 178 NALLLTNNVALDGRRLRVEKAKVNRTLFIAKMNRSLTNVKLREAVECYGPVEI-VTVIKN 236
Query: 236 PQNANQNRGFAFIEYYNH--ACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQV 293
Q +++G F+++ A A Y K K+ V WA N
Sbjct: 237 HQT-QKSKGCGFVKFVFREDAMAAYLGLKNQFRKW-------VVEWATSSNDPDVLGVDK 288
Query: 294 KALYVKNL-PKDITQDRLKELFAHHGKITKVVIPPAKPGQE------RSRYGFVHFAERS 346
++V L P +T+ L+E F +G++ V + QE R+ + FV F S
Sbjct: 289 YNVFVGGLNPLLVTKAALEERFGAYGQVDAVTLINRDEAQENSMALPRNAFAFVRFRHAS 348
Query: 347 SAMKALKN---TEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYP 394
S+ A+++ E E +V C + + ++T +S + NP P
Sbjct: 349 SSASAIEHENGAEWLERRIRVQYCESLEMKNKRRTQKYFSSLATGGNPYLP 399
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 120/262 (45%), Gaps = 18/262 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + + +Y+G + ++ L IG V +R+ + + + GYA+V + +
Sbjct: 57 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGE 116
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+EELN +KG+ + +Q + +FI N+ + G +
Sbjct: 117 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 175
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ +D +N N ++G+ F+ Y A + + ++ L++ V P+
Sbjct: 176 LSCKVAQD-ENGN-SKGYGFVHYETDEAAHQAIKHVNG--MLLNEKKVYVGHHIPKKDRQ 231
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S ++KA +Y+KN+ + + D +ELF +G IT + + G+ R +GFV+F
Sbjct: 232 SKFEEMKANFTNIYIKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRG-FGFVNFT 290
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
SA KA++ + GQ L
Sbjct: 291 THESAAKAVEELHGKDFRGQDL 312
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 100/232 (43%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + ++G +KGY FV + T E A QAI+ +
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAAHQAIKHV 209
Query: 182 NSCELKGKKIKCSA------AQAKH--------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ Q+K ++I N+ +D+ R+ K G +
Sbjct: 210 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYIKNISTEASDDEFRELFEKYG-DI 268
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D + ++RGF F+ + H A + +++ F+ D V A ++
Sbjct: 269 TSSSLARDQEG--KSRGFGFVNFTTHESAAKAVEELHGKDFRGQD--LYVGRAQKKHERE 324
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E + Q LY+KNL D+ ++L+++FA G IT +
Sbjct: 325 EELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLRQMFAEFGPITSAKV 376
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 86/177 (48%), Gaps = 28/177 (15%)
Query: 85 AQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKS 142
A KH +G E KV +K + ++ + + + +Y+ I +ASDD+ R +
Sbjct: 205 AIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYIKNISTEASDDEFRELFEK 264
Query: 143 IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH-- 200
G++T + + ++ G+++G+ FV F T E A++A+EEL+ + +G+ + AQ KH
Sbjct: 265 YGDITSSSLARDQE-GKSRGFGFVNFTTHESAAKAVEELHGKDFRGQDLYVGRAQKKHER 323
Query: 201 ----------------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L+I N+ + ++ +R+ + GP + S ++++D
Sbjct: 324 EEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDEKLRQMFAEFGP-ITSAKVMRD 379
>gi|148226518|ref|NP_001081557.1| nucleolin [Xenopus laevis]
gi|295899|emb|CAA51460.1| nucleolin [Xenopus laevis]
Length = 705
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 121/269 (44%), Gaps = 29/269 (10%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ IP+ S ++L+ ++ ++RI G D G KG A+V F T+ A++A+EE
Sbjct: 378 LFVKNIPYSTSAEELQEIFEN---AKDIRIPTGND-GSNKGIAYVEFSTEAEANKALEEK 433
Query: 182 NSCELKGKKIKCSAAQAKHR--------------LFIGNVPRNWGEDDMRKAVTKIGPGV 227
E++G+ + K + L + N+ + ED +R+ K
Sbjct: 434 QGAEIEGRSLFVDFTGEKSQNSGGRRGPAGDSKVLVVNNLSYSATEDSLREVFEK----A 489
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
SI + PQN + +GFAF+E+ + A+ + +N + + S
Sbjct: 490 TSIRI---PQNQGRAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRLEFSQGGGPQGGG 546
Query: 288 SAAS-QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346
S Q K L+V+ L +D T++ LKE F G I ++ G + +GFV F+
Sbjct: 547 RGGSVQSKTLFVRGLSEDTTEETLKEAF--DGSINARIVTDRDTGASKG-FGFVDFSSAE 603
Query: 347 SAMKALKNTEKYEIDGQVLDCSLAKPQAD 375
A A + E EIDG + AKP+ D
Sbjct: 604 DAKAAREAMEDGEIDGNKVTLDFAKPKGD 632
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 117/262 (44%), Gaps = 17/262 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + +Y+G + ++ L IG V +R+ + + + GYA+V + T
Sbjct: 57 PQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGE 116
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+EELN +KG+ + +Q + +FI N+ + G +
Sbjct: 117 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 175
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ +D +N N ++G+ F+ Y A + + ++ L++ V P+
Sbjct: 176 LSCKVAQD-ENGN-SKGYGFVHYETDEAASQAIKHVNG--MLLNEKKVYVGHHIPKKDRQ 231
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S ++KA +YVKN+ ++T D + LF +G +T + + + +GFV+F
Sbjct: 232 SKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFT 291
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
A KA++ + E GQ L
Sbjct: 292 SHEDASKAVQELNEKEFHGQNL 313
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 33/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + ++G +KGY FV + T E ASQAI+ +
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAASQAIKHV 209
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ K +A +++ N+ +D+ R K G V
Sbjct: 210 NGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYG-DV 268
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
S L +D Q ++RGF F+ + +H A + Q+++ +F + V A ++
Sbjct: 269 TSSSLARD-QETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQN--LYVGRAQKKHERE 325
Query: 288 S-------AASQVKA-------LYVKNLPKDITQDRLKELFAHHGKITKVVI 325
AA Q KA LY+KNL ++ ++L++LF+ G IT +
Sbjct: 326 EELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKV 377
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 78/158 (49%), Gaps = 28/158 (17%)
Query: 102 KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAK 161
K D + K E+ A + + +Y+ I + +DD+ R + G+VT + + +++G+++
Sbjct: 227 KKDRQSKFDEMKA---NFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSR 283
Query: 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------------- 200
G+ FV F + E AS+A++ELN E G+ + AQ KH
Sbjct: 284 GFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKY 343
Query: 201 ---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L+I N+ ++ +R+ ++ GP + S ++++D
Sbjct: 344 QGVNLYIKNLDDEVDDEKLRQLFSEFGP-ITSAKVMRD 380
>gi|336364894|gb|EGN93247.1| hypothetical protein SERLA73DRAFT_172163 [Serpula lacrymans var.
lacrymans S7.3]
Length = 684
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 123/270 (45%), Gaps = 24/270 (8%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G + ++ L IG V +R+ + + + GYA+V + +A+E+L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTSDGERALEQL 105
Query: 182 NSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
N +K + + +Q + +FI N+ + G V+S ++
Sbjct: 106 NYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFG-NVLSCKVA 164
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQV 293
D +++G+ F+ Y AE + + ++ L+D V + R S ++
Sbjct: 165 TDEHG--RSKGYGFVHYETGEAAETAIKAVNG--MLLNDKKVYVGYHISRKERQSKLDEM 220
Query: 294 KA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFV---HFAERS 346
KA LY+KNL +TQD +E+F +G +T ++ + G + +GFV H E
Sbjct: 221 KAQFTNLYIKNLDTSVTQDEFEEMFQKYGNVTSAIVQVDEEGNSKG-FGFVNYEHHEEAQ 279
Query: 347 SAMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
SA+ AL +T +I G+ L S A+ +A++
Sbjct: 280 SAVDALHDT---DIRGKKLFVSRAQKKAER 306
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 113/279 (40%), Gaps = 37/279 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G V ++ + G +KGY FV + T E A AI+ +
Sbjct: 134 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVAT-DEHGRSKGYGFVHYETGEAAETAIKAV 192
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ K +A+ L+I N+ + +D+ + K G
Sbjct: 193 NGMLLNDKKVYVGYHISRKERQSKLDEMKAQFTNLYIKNLDTSVTQDEFEEMFQKYGNVT 252
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR---- 283
+I V + N+ +GF F+ Y +H A+ + + + + VS A +
Sbjct: 253 SAIVQVDEEGNS---KGFGFVNYEHHEEAQSAVDALHDTDIR--GKKLFVSRAQKKAERE 307
Query: 284 ----------NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
E + Q LY+KNL D+ ++L+ F G IT + + +
Sbjct: 308 EELRRSYEQAKMEKLSKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCKV--MRDDKS 365
Query: 334 RSR-YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
S+ +GFV F+ A KA+ I + L SLA+
Sbjct: 366 TSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQ 404
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 21/142 (14%)
Query: 71 EEEEETEDVVDGID-------------AQKHYDGDEEMKVAESDKDDEKKKHAELLALPP 117
E EE + VD + AQK + +EE++ + EK +
Sbjct: 273 EHHEEAQSAVDALHDTDIRGKKLFVSRAQKKAEREEELRRSYEQAKMEKLSKYQ------ 326
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D D+ LR + G +T ++M+ D +KG+ FV F + + A++A
Sbjct: 327 -GVNLYIKNLEDDVDDEKLRAEFEPFGTITSCKVMR-DDKSTSKGFGFVCFSSPDEATKA 384
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N+ + K + S AQ +
Sbjct: 385 VAEMNNKMIGSKPLYVSLAQRR 406
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 83/184 (45%), Gaps = 28/184 (15%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ ++L + + +Y+ + + D+ + G VT I++ + G +KG+ F
Sbjct: 211 KERQSKLDEMKAQFTNLYIKNLDTSVTQDEFEEMFQKYGNVTSA-IVQVDEEGNSKGFGF 269
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH------------------------R 201
V + E A A++ L+ +++GKK+ S AQ K
Sbjct: 270 VNYEHHEEAQSAVDALHDTDIRGKKLFVSRAQKKAEREEELRRSYEQAKMEKLSKYQGVN 329
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L+I N+ + ++ +R G + S ++++D + + ++GF F+ + + A +
Sbjct: 330 LYIKNLEDDVDDEKLRAEFEPFG-TITSCKVMRD--DKSTSKGFGFVCFSSPDEATKAVA 386
Query: 262 KMSN 265
+M+N
Sbjct: 387 EMNN 390
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 131/270 (48%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN D+ +RLKELF+ +GK V + G+ + +GFV F +
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPSGKSKG-FGFVSFEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A +A+++ +I+G+++ A+ + +++
Sbjct: 244 ANQAVEDMNGKDINGKMVFVGRAQKKVERQ 273
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 91/390 (23%), Positives = 163/390 (41%), Gaps = 48/390 (12%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T++ A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQDAADRAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+G+D +++ +K G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYG-KT 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS----NPKF--------KLDDNAP 275
+S++++ DP + +++GF F+ + H A + + M+ N K K++ A
Sbjct: 218 LSVKVMTDP--SGKSKGFGFVSFEKHEDANQAVEDMNGKDINGKMVFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E + Q LY+KNL I ++L++ F+ G IT AK E
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS-----AKVMLEEG 330
Query: 336 R---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSN-SQKSALNP 391
R +GFV F+ A KA+ + + L +LA+ + ++K + Q+ A
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRIAGMR 390
Query: 392 TYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAML---PMLLPDGRI-GY 447
P + A G VP ++P Y AP MA + P GR+ G+
Sbjct: 391 ALPANTIINQFQPAAGGYFMPAVPQAQSRPTYY----APNQMAQMRPNPRWQQAGRLQGF 446
Query: 448 VLQQPGVQQHNPPPQPRSGRGGAGSSSSGG 477
++Q P P R + +S G
Sbjct: 447 QGMPNAMRQSGPRPALRHLTPAGNAQASRG 476
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 29/200 (14%)
Query: 75 ETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDD 134
ET+D D + + + KV K++ AEL A + VY+ D D+
Sbjct: 146 ETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDE 205
Query: 135 DLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194
L+ G+ V++M SG++KG+ FV+F E A+QA+E++N ++ GK +
Sbjct: 206 RLKELFSKYGKTLSVKVMT-DPSGKSKGFGFVSFEKHEDANQAVEDMNGKDINGKMVFVG 264
Query: 195 AAQAK------------------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISI 230
AQ K L+I N+ ++ +RK + G SI
Sbjct: 265 RAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG----SI 320
Query: 231 ELVKDPQNANQNRGFAFIEY 250
K +++GF F+ +
Sbjct: 321 TSAKVMLEEGRSKGFGFVCF 340
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|213625217|gb|AAI70091.1| LOC397919 protein [Xenopus laevis]
Length = 704
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 121/269 (44%), Gaps = 29/269 (10%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ IP+ S ++L+ ++ ++RI G D G KG A+V F T+ A++A+EE
Sbjct: 377 LFVKNIPYSTSAEELQEIFEN---AKDIRIPTGND-GSNKGIAYVEFSTEAEANKALEEK 432
Query: 182 NSCELKGKKIKCSAAQAKHR--------------LFIGNVPRNWGEDDMRKAVTKIGPGV 227
E++G+ + K + L + N+ + ED +R+ K
Sbjct: 433 QGAEIEGRSLFVDFTGEKSQNSGGRRGPAGDSKVLVVNNLSYSATEDSLREVFEK----A 488
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
SI + PQN + +GFAF+E+ + A+ + +N + + S
Sbjct: 489 TSIRI---PQNQGRAKGFAFVEFSSMEDAKEAMDSCNNTEVEGRSIRLEFSQGGGPQGGG 545
Query: 288 SAAS-QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346
S Q K L+V+ L +D T++ LKE F G I ++ G + +GFV F+
Sbjct: 546 RGGSVQSKTLFVRGLSEDTTEETLKEAF--DGSINARIVTDRDTGASKG-FGFVDFSSAE 602
Query: 347 SAMKALKNTEKYEIDGQVLDCSLAKPQAD 375
A A + E EIDG + AKP+ D
Sbjct: 603 DAKAAREAMEDGEIDGNKVTLDFAKPKGD 631
>gi|195111486|ref|XP_002000309.1| GI10157 [Drosophila mojavensis]
gi|193916903|gb|EDW15770.1| GI10157 [Drosophila mojavensis]
Length = 356
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 80/145 (55%), Gaps = 8/145 (5%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G+ + + +P D +++L S G + +V+I++ ++G + Y FV + A++A+
Sbjct: 30 GTNLLINYLPSDMQENELHQLFNSFGLLRQVKIIRDPETGASHCYGFVNYTNSISANKAL 89
Query: 179 EELNSCELKGKKIKCSAAQ------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
+N C ++GKK+K S A+ K +++GN+P ++ +R+ + G ++ + L
Sbjct: 90 NSMNGCPVRGKKLKVSMARPSSDDTKKTNIYVGNLPLSYDAAQVREIFERFG-KIVDLNL 148
Query: 233 VKDPQNANQNRGFAFIEYYNHACAE 257
+KD + NQ+RG AF+ Y A E
Sbjct: 149 LKD-RYTNQSRGTAFVRYEMRASVE 172
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKV-VIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
L + LP D+ ++ L +LF G + +V +I + G YGFV++ SA KAL +
Sbjct: 33 LLINYLPSDMQENELHQLFNSFGLLRQVKIIRDPETGASHC-YGFVNYTNSISANKALNS 91
Query: 355 TEKYEIDGQVLDCSLAKPQAD 375
+ G+ L S+A+P +D
Sbjct: 92 MNGCPVRGKKLKVSMARPSSD 112
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 11/165 (6%)
Query: 188 GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAF 247
GK+I+ S L I +P + E+++ + G + +++++DP+ + + F
Sbjct: 22 GKEIQQSGGT---NLLINYLPSDMQENELHQLFNSFGL-LRQVKIIRDPETG-ASHCYGF 76
Query: 248 IEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQ 307
+ Y N A + M+ + VS A P SS ++ +YV NLP
Sbjct: 77 VNYTNSISANKALNSMNGCPVR--GKKLKVSMARP----SSDDTKKTNIYVGNLPLSYDA 130
Query: 308 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL 352
+++E+F GKI + + + + FV + R+S KA+
Sbjct: 131 AQVREIFERFGKIVDLNLLKDRYTNQSRGTAFVRYEMRASVEKAI 175
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 119/258 (46%), Gaps = 19/258 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N LKG+ I+ +Q +FI N+ + + + G ++S +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+ D + RGF F+ + H A+ + M+ L+D V R AE
Sbjct: 130 VACDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDRKVFVGHFKSRREREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +YVKNLP D+ + L++LF+ GK+ V + G R +GFV+F +
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVL 365
A KA+ + E+ G++L
Sbjct: 244 AQKAVVHMNGKEVSGRLL 261
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 114/262 (43%), Gaps = 33/262 (12%)
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH- 200
+ G + ++ D ++G+ FV F T E A QAI +N L +K+ +++
Sbjct: 121 TFGNILSCKV--ACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 201 -------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAF 247
+++ N+P + E ++ ++ G ++S+++++D N+ +R F F
Sbjct: 179 REAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFG-KMLSVKVMRD--NSGHSRCFGF 235
Query: 248 IEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA---------- 295
+ + H A+ + M+ + +L + +N Q+K
Sbjct: 236 VNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVN 295
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
LYVKNL I D+L++ F+ +G IT + G +GFV F+ A KA+
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 356 EKYEIDGQVLDCSLAKPQADQK 377
+ + L +LA+ + ++K
Sbjct: 354 NGRIVGTKPLYVALAQRKEERK 375
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 29/179 (16%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV +++ AEL A + +Y+ +P D + L+ G++ V++M+
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR-D 225
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHR------ 201
+SG ++ + FV F E A +A+ +N E+ G+ + AQ K R
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQ 285
Query: 202 ----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L++ N+ + +D +RK + G I K ++GF F+ +
Sbjct: 286 DRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYG----VITSAKVMTEGGHSKGFGFVCF 340
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 17/168 (10%)
Query: 33 VDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGIDAQKHYDGD 92
V + DN V +E+ EE ++ V + +E + ++ AQK +
Sbjct: 220 VKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH------MNGKEVSGRLLYAGRAQKRVERQ 273
Query: 93 EEMKV-AESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
E+K E K D +++ G +Y+ + DD LR G +T ++
Sbjct: 274 NELKRRFEQMKQDRLRRY--------QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV 325
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
M + G +KG+ FV F + E A++A+ E+N + K + + AQ K
Sbjct: 326 MT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 111/244 (45%), Gaps = 21/244 (8%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + S++ L IG+V +R+ + + + GYA+V + + A++A+E
Sbjct: 4 TSLYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATRALE 63
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
LN + GK ++ + HR +FI N+ R + G ++
Sbjct: 64 LLNFTPVNGKAVRIMFS---HRDPSIRKSGTANIFIKNLDRAIDNKALHDTFVSFG-NIL 119
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ D + Q++G+ F+++ A+ + K++ L R E
Sbjct: 120 SCKVATD--SNGQSKGYGFVQFEQEESAQVAIDKVNG---MLVAEKQVFVGPFVRRQERE 174
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
+ ++VKNL + T D LKE+F GKIT V+ G+ + +GFV+F A
Sbjct: 175 QNGKFNNVFVKNLGESTTDDELKEVFGAFGKITSAVVMRDSDGKSKC-FGFVNFENPDEA 233
Query: 349 MKAL 352
KA+
Sbjct: 234 AKAV 237
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 78/357 (21%), Positives = 149/357 (41%), Gaps = 46/357 (12%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +++ + + L S G + ++ + G++KGY FV F +E A AI+
Sbjct: 92 ANIFIKNLDRAIDNKALHDTFVSFGNILSCKVATDSN-GQSKGYGFVQFEQEESAQVAID 150
Query: 180 ELNSCELKGKKIKCSAAQAK---------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISI 230
++N + K++ + + +F+ N+ + +D++++ G + S
Sbjct: 151 KVNGMLVAEKQVFVGPFVRRQEREQNGKFNNVFVKNLGESTTDDELKEVFGAFGK-ITSA 209
Query: 231 ELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP---RNAES 287
+++D + +++ F F+ + N A + ++ K ++D V A R AE
Sbjct: 210 VVMRD--SDGKSKCFGFVNFENPDEAAKAVVGLNGKK--IEDKEWYVGRAQKKSEREAEL 265
Query: 288 SAAS-----------QVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 336
A Q LY+KNL D+ +RL+E+FA G IT + GQ +
Sbjct: 266 RAKYEQERKERIDRYQGANLYLKNLDDDVDDERLREIFADFGSITSCKVMRDAQGQSKGS 325
Query: 337 YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQK-------SAL 389
GFV ++ A +A I + + ++A+ + +++ + + +
Sbjct: 326 -GFVAYSAPEEANRATIEMNGKMIGSKPIYVAMAQRKEERRAKLQAQFAQMRSPVGVATT 384
Query: 390 NPTY---PPHLGYGMVGGAYGALGAGYVPAGFA--QPMVYGRGAAPGGMAMLPMLLP 441
P Y P LG + G AL PAGFA Q M+ G PGG + +P
Sbjct: 385 MPMYHPGAPGLGQQLFYGQPPALMPPQ-PAGFAYQQQML---GMRPGGGQLPSYFVP 437
>gi|384247365|gb|EIE20852.1| hypothetical protein COCSUDRAFT_4708, partial [Coccomyxa
subellipsoidea C-169]
Length = 264
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 128/275 (46%), Gaps = 42/275 (15%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G + ++ L+ ++G V+EVRI+K + +G + G AFV F + A+ A++ +
Sbjct: 7 LYVGNLHPYVNEAVLQDIFSTLGTVSEVRIVKDRATGNSAGSAFVKFEDHQAAAIALKTI 66
Query: 182 NSCELKGKKIKCSAAQAKHR---------LFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
N L K+++ A K + +F+GN+ + + + +A +G S
Sbjct: 67 NGRILYNKEVRIQWAFQKEKTENTASHSHIFVGNLSGDVADPVLLQAFQHLGE--CSDAR 124
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNP---KFKLDD-------------NAPT 276
V + +++GF F+ + AE + +M ++K+ + T
Sbjct: 125 VMWDHSTGRSKGFGFVSFRTKEAAEKALAEMDGAQVGQWKIRCGWAHHKTEAVTGLDIDT 184
Query: 277 VSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR 336
V ADP N +YV NLP ++ ++ L+ F +G+IT + P G
Sbjct: 185 VDRADPANTN---------VYVGNLPTEVMEEDLRAAFGAYGEITG--LKPCHKGG---- 229
Query: 337 YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
YGFV + + S+A++A+ E+ G+++ CS +
Sbjct: 230 YGFVTYRDHSAAVQAIVGMNGKELKGKMVKCSWGR 264
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 27/169 (15%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +++G + D +D L + +GE ++ R+M +G +KG+ FV+FRTKE A +A+
Sbjct: 94 SHIFVGNLSGDVADPVLLQAFQHLGECSDARVMWDHSTGRSKGFGFVSFRTKEAAEKALA 153
Query: 180 ELNSCELKGKKIKCSAAQ-------------------AKHRLFIGNVPRNWGEDDMRKAV 220
E++ ++ KI+C A A +++GN+P E+D+R A
Sbjct: 154 EMDGAQVGQWKIRCGWAHHKTEAVTGLDIDTVDRADPANTNVYVGNLPTEVMEEDLRAAF 213
Query: 221 TKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFK 269
G I +K G+ F+ Y +H+ A + M+ + K
Sbjct: 214 GAYGE----ITGLKPCHKG----GYGFVTYRDHSAAVQAIVGMNGKELK 254
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVR-IMKGKDSGEAKGYAFVTFRTKELAS 175
P + VY+G +P + ++DLR + GE+T ++ KG GY FVT+R A
Sbjct: 190 PANTNVYVGNLPTEVMEEDLRAAFGAYGEITGLKPCHKG-------GYGFVTYRDHSAAV 242
Query: 176 QAIEELNSCELKGKKIKCS 194
QAI +N ELKGK +KCS
Sbjct: 243 QAIVGMNGKELKGKMVKCS 261
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 77/177 (43%), Gaps = 5/177 (2%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++GN+ E ++ + +G V + +VKD N + G AF+++ +H A + +
Sbjct: 7 LYVGNLHPYVNEAVLQDIFSTLGT-VSEVRIVKDRATGN-SAGSAFVKFEDHQAAAIALK 64
Query: 262 KMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT 321
++ L + + WA + + AS ++V NL D+ L + F H G+ +
Sbjct: 65 TINGRI--LYNKEVRIQWAFQKEKTENTASH-SHIFVGNLSGDVADPVLLQAFQHLGECS 121
Query: 322 KVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
+ +GFV F + +A KAL + ++ + C A + + T
Sbjct: 122 DARVMWDHSTGRSKGFGFVSFRTKEAAEKALAEMDGAQVGQWKIRCGWAHHKTEAVT 178
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 116/262 (44%), Gaps = 18/262 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + +Y+G + ++ L IG V +R+ + + + GYA+V + T
Sbjct: 60 PQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGE 119
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+EELN +KG+ + +Q + +FI N+ + G +
Sbjct: 120 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 178
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ +D ++G+ F+ Y A + + ++ L++ V P+
Sbjct: 179 LSCKVAQDEH--GNSKGYGFVHYETDEAASQAIKHVNG--MLLNEKKVYVGHHIPKKDRQ 234
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S ++KA +YVKN+ ++T D ++LF G +T + + G+ R +GFV+F
Sbjct: 235 SKFEEMKANFTNIYVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQEGKSRG-FGFVNFT 293
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
+A KA+ + + GQ L
Sbjct: 294 THEAAAKAVDDLNGKDFRGQDL 315
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 99/232 (42%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E ASQAI+ +
Sbjct: 154 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DEHGNSKGYGFVHYETDEAASQAIKHV 212
Query: 182 NSCELKGKKIKCSA------AQAKH--------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ Q+K +++ N+ +D+ R T G V
Sbjct: 213 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNIANEVTDDEFRDLFTAFG-DV 271
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D + ++RGF F+ + H A + ++ F+ D V A ++
Sbjct: 272 TSSSLARDQEG--KSRGFGFVNFTTHEAAAKAVDDLNGKDFRGQD--LYVGRAQKKHERE 327
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LY+KNL ++ ++L++LFA G IT +
Sbjct: 328 EELRKSYEAARMEKASKYQGVNLYIKNLDDEVDDEKLRQLFADFGPITSAKV 379
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 84/177 (47%), Gaps = 28/177 (15%)
Query: 85 AQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKS 142
A KH +G E KV +K + ++ + + + +Y+ I ++ +DD+ R +
Sbjct: 208 AIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNIANEVTDDEFRDLFTA 267
Query: 143 IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH-- 200
G+VT + + ++ G+++G+ FV F T E A++A+++LN + +G+ + AQ KH
Sbjct: 268 FGDVTSSSLARDQE-GKSRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHER 326
Query: 201 ----------------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L+I N+ ++ +R+ GP + S ++++D
Sbjct: 327 EEELRKSYEAARMEKASKYQGVNLYIKNLDDEVDDEKLRQLFADFGP-ITSAKVMRD 382
>gi|346323639|gb|EGX93237.1| polyadenylate-binding protein [Cordyceps militaris CM01]
Length = 736
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 117/262 (44%), Gaps = 18/262 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + + +Y+G + ++ L IG V +R+ + + + GYA+V + +
Sbjct: 51 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGE 110
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+EELN +KG+ + +Q + +FI N+ + G +
Sbjct: 111 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 169
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ +D ++G+ F+ Y A+ + + ++ L++ V P+
Sbjct: 170 LSCKVAQD--ETGSSKGYGFVHYETDEAAQQAIKHVNG--MLLNEKKVYVGHHIPKKDRQ 225
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S ++KA +Y+KN+ D+T D+ + LF HG +T I G+ R +GFV+F
Sbjct: 226 SKFEEMKANFTNVYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPDGKSRG-FGFVNFT 284
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
+A A++ + GQ L
Sbjct: 285 THEAASAAVEELNNKDFHGQEL 306
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 29/158 (18%)
Query: 102 KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAK 161
K D + K E+ A + + VY+ I D +DD R ++ G+VT I + D G+++
Sbjct: 221 KKDRQSKFEEMKA---NFTNVYIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPD-GKSR 276
Query: 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------------- 200
G+ FV F T E AS A+EELN+ + G+++ AQ KH
Sbjct: 277 GFGFVNFTTHEAASAAVEELNNKDFHGQELYVGRAQKKHEREEELRKSYEAARIEKASKY 336
Query: 201 ---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L+I N+ + ++ +R T+ GP + S ++++D
Sbjct: 337 QGVNLYIKNLDDDVDDEKLRTMFTEFGP-ITSAKVMRD 373
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 30/230 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + ++G +KGY FV + T E A QAI+ +
Sbjct: 145 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DETGSSKGYGFVHYETDEAAQQAIKHV 203
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ K +A ++I N+ + +D R G V
Sbjct: 204 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYIKNIAPDVTDDQFRVLFEAHG-DV 262
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
S + +DP ++RGF F+ + H A + ++++N F K +
Sbjct: 263 TSSSIARDPDG--KSRGFGFVNFTTHEAASAAVEELNNKDFHGQELYVGRAQKKHEREEE 320
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
+ E ++ Q LY+KNL D+ ++L+ +F G IT +
Sbjct: 321 LRKSYEAARIEKASKYQGVNLYIKNLDDDVDDEKLRTMFTEFGPITSAKV 370
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 150/359 (41%), Gaps = 59/359 (16%)
Query: 126 GIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE 185
GI H A D F G + ++ SG++KGY FV F +E A +AIE+LN
Sbjct: 122 GIDHKALHDTFSAF----GNILSCKVAT-DSSGQSKGYGFVQFDNEESAQKAIEKLNGML 176
Query: 186 LKGKKIKCS---------AAQAKHRL---FIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
L K++ +A K R ++ N+ E+D++KA + G + S ++
Sbjct: 177 LNDKQVYVGPFLRKQERESAIDKTRFNNVYVKNLSETTTEEDLKKAFGEYGT-ITSAVVM 235
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
+D + + F F+ + N A + + ++ KF DD V A +N
Sbjct: 236 RD--GDGKTKCFGFVNFENADDAATAVEALNGKKF--DDKEWFVGKAQKKNERENELKVR 291
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
E++ Q LY+KNL I DRLK+LF+ G IT + G R GF
Sbjct: 292 FEQSMKEAADKFQGANLYIKNLDDSIGDDRLKQLFSPFGTITSCKVMRDPNGISRGS-GF 350
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT---SGGSNSQKSALNPT---- 392
V F+ A KAL + + L +LA+ + D++ + S + A+ P+
Sbjct: 351 VAFSTPEEASKALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMAPSVAPR 410
Query: 393 ---YPP-------HLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLP 441
YPP + YG A G+ G+ Q +V G PGG M +P
Sbjct: 411 MPMYPPGGPGLGQQIFYGQAPPAIIPPQPGF---GYQQQLV--PGMRPGGAPMPNFFVP 464
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 123/255 (48%), Gaps = 24/255 (9%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + +D L +G+V VR+ + + + GY +V + + + A++A++
Sbjct: 24 TSLYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPQDAARALD 83
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
LN L G I+ + HR +FI N+ + + + G ++
Sbjct: 84 MLNFTPLNGSPIRIMYS---HRDPSVRKSGSGNIFIKNLDKGIDHKALHDTFSAFG-NIL 139
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ D ++ Q++G+ F+++ N A+ + +K++ L+D V + S
Sbjct: 140 SCKVATD--SSGQSKGYGFVQFDNEESAQKAIEKLNG--MLLNDKQVYVGPFLRKQERES 195
Query: 289 AASQVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346
A + + +YVKNL + T++ LK+ F +G IT V+ G+ + +GFV+F
Sbjct: 196 AIDKTRFNNVYVKNLSETTTEEDLKKAFGEYGTITSAVVMRDGDGKTKC-FGFVNFENAD 254
Query: 347 SAMKALK--NTEKYE 359
A A++ N +K++
Sbjct: 255 DAATAVEALNGKKFD 269
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 125/267 (46%), Gaps = 18/267 (6%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+Y+G + ++ L IG V +R+ + + + GYA+V + +A+E+L
Sbjct: 50 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 109
Query: 182 NSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
N +KG+ + +Q + +FI N+ + G V+S ++
Sbjct: 110 NYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFAAFG-NVLSCKVA 168
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN----APTVSWADPRNAESSA 289
D +++G+ F+ Y A+ + + ++ L+D P +S + ++
Sbjct: 169 TDEH--GRSKGYGFVHYETAEAADTAIKAVNG--MLLNDKKVYVGPHISRKERQSKIEEM 224
Query: 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
+Q +YVKN+ ++T + ++LF G +T VI + G+ + +GFV+F + A
Sbjct: 225 KAQFTNVYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRDEEGRSKG-FGFVNFEKHEEAQ 283
Query: 350 KALKNTEKYEIDGQVLDCSLAKPQADQ 376
K +++ +E++G+ L + A+ +A++
Sbjct: 284 KGVESLHDFELNGKKLFVTRAQKKAER 310
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ +++ + + VY+ I + +D++ R + G VT I + ++ G +KG+ F
Sbjct: 215 KERQSKIEEMKAQFTNVYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRDEE-GRSKGFGF 273
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V F E A + +E L+ EL GKK+ + AQ K
Sbjct: 274 VNFEKHEEAQKGVESLHDFELNGKKLFVTRAQKK 307
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 125/270 (46%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N LKG+ I+ +Q +FI N+ + + + G ++S +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+ D + RGF F+ + H A+ + M+ L+D V R AE
Sbjct: 130 VACDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDRKVFVGHFKSRREREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +YVKNLP D+ + L++LF+ GK+ V + G R +GFV+F +
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+ + E+ G++L A+ + +++
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQ 273
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 120/282 (42%), Gaps = 33/282 (11%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + ++ D ++G+ FV F T E A QAI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKV--ACDEHGSRGFGFVHFETHEAAQQAINTM 158
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L +K+ +++ +++ N+P + E ++ ++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGK-M 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSWADPRNA 285
+S+++++D N+ +R F F+ + H A+ + M+ + +L + +N
Sbjct: 218 LSVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 286 ESSAASQVKA----------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
Q+K LYVKNL I D+L++ F+ +G IT + G
Sbjct: 276 LKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV--MTEGGHSK 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERK 375
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV +++ AEL A + +Y+ +P D + L+ G++ V++M+
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR-D 225
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
+SG ++ + FV F E A +A+ +N E+ G+ + AQ +
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKR 269
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 17/168 (10%)
Query: 33 VDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGIDAQKHYDGD 92
V + DN V +E+ EE ++ V + +E + ++ AQK +
Sbjct: 220 VKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH------MNGKEVSGRLLYAGRAQKRVERQ 273
Query: 93 EEMKV-AESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
E+K E K D +++ G +Y+ + DD LR G +T ++
Sbjct: 274 NELKRRFEQMKQDRLRRY--------QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV 325
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
M + G +KG+ FV F + E A++A+ E+N + K + + AQ K
Sbjct: 326 MT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|326430672|gb|EGD76242.1| polyadenylate binding protein [Salpingoeca sp. ATCC 50818]
Length = 765
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 121/259 (46%), Gaps = 16/259 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + ++ +L + SIG V VR+ + + + + GY +V F E A A+
Sbjct: 79 ASLYVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITRSSLGYGYVNFNKAEDAEAAMG 138
Query: 180 ELNSCELKGKKIKCSAAQ---AKHR-----LFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+LN +L G+ I+ + K R +FI +P + +R + G ++S +
Sbjct: 139 QLNFHDLHGRHIRIMKVERDPKKRRSGVGNIFISGLPADTTSVHLRDTFEQFGK-ILSCK 197
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNA----ES 287
V D ++ + RGF F+ + + AE + + +N K D V+ PR +
Sbjct: 198 AVLD--HSGRCRGFGFVHFEDPKVAERAIAE-ANGKDAGGDRKLRVAPFKPRKQREQEQE 254
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+YVK+L +D ++ L +LF +G IT + K YGFV+FA+ +
Sbjct: 255 ERTKNFTNVYVKSLRRDADEEELGKLFEPYGDITSKALRTYKLKDTERPYGFVNFADTEA 314
Query: 348 AMKALKNTEKYEIDGQVLD 366
A K ++ E ++ D +D
Sbjct: 315 AQKCVEEGEMHQRDIFYVD 333
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G +++ + +++DLR F + G V V++M+ K+ G ++ + FVTF T+E A AI
Sbjct: 437 GGNLFVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKE-GVSRCFGFVTFATREEAESAI 495
Query: 179 EELNSCELKGKKI 191
+ N L+ + I
Sbjct: 496 AKKNRQPLQDRPI 508
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKAL--K 353
L+VKN +++T++ L++ F G + V + K G R +GFV FA R A A+ K
Sbjct: 440 LFVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRC-FGFVTFATREEAESAIAKK 498
Query: 354 NTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGY 413
N + + + L + + + YP + G M GA G GY
Sbjct: 499 NRQPLQDRPIYVAFHLTRQERQARKQQQHPQHPQQGMYMYPQYPGMPM-----GAFGPGY 553
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 121/268 (45%), Gaps = 16/268 (5%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + ++ L IG V +R+ + + + GYA+V + +A+E
Sbjct: 56 ASLYVGELDSTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 115
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+LN +K + + +Q + +FI N+ + G V+S +
Sbjct: 116 QLNYSLIKNRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDHKALHDTFAAFG-NVLSCK 174
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSA-- 289
+ D ++RGF F+ +Y+ A A + K N D + + ++
Sbjct: 175 VATDENG--RSRGFGFV-HYDTAEAADTAIKAVNGMLLNDKKVFVGHYISKKERQAHIDE 231
Query: 290 -ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
SQ LYVKNL ++T D ++FA G++T V+ + G+ + +GFV+F + SA
Sbjct: 232 QKSQFTNLYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDEEGKSKG-FGFVNFKDHESA 290
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQ 376
A+ E++G+ L + A+ +A++
Sbjct: 291 QAAVDALHDTELNGKKLFVTRAQKKAER 318
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 28/170 (16%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+ + + +DD+ GEVT + K ++ G++KG+ FV F+ E A A++
Sbjct: 237 TNLYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDEE-GKSKGFGFVNFKDHESAQAAVD 295
Query: 180 ELNSCELKGKKIKCSAAQAK------------------------HRLFIGNVPRNWGEDD 215
L+ EL GKK+ + AQ K L+I N+ + +D
Sbjct: 296 ALHDTELNGKKLFVTRAQKKAEREEELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDDK 355
Query: 216 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSN 265
+R G + S ++++D + ++GF F+ Y + A + +M+N
Sbjct: 356 LRAEFEPFG-TITSCKIMRDEKGT--SKGFGFVCYSSPEEATKAVAEMNN 402
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 104/254 (40%), Gaps = 39/254 (15%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
I H A D F G V ++ ++G ++G+ FV + T E A AI+ +N L
Sbjct: 155 IDHKALHDTFAAF----GNVLSCKVAT-DENGRSRGFGFVHYDTAEAADTAIKAVNGMLL 209
Query: 187 KGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
KK+ +K L++ N+ +D+ K G V S +
Sbjct: 210 NDKKVFVGHYISKKERQAHIDEQKSQFTNLYVKNLDTEVTDDEFNDMFAKFGE-VTSAVV 268
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR--------- 283
KD + +++GF F+ + +H A+ + + + + L+ V+ A +
Sbjct: 269 QKDEEG--KSKGFGFVNFKDHESAQAAVDALHDTE--LNGKKLFVTRAQKKAEREEELRK 324
Query: 284 -----NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 338
E + Q LY+KNL D+ D+L+ F G IT I + G + +G
Sbjct: 325 SYEQAKMEKLSKYQGANLYIKNLEDDMDDDKLRAEFEPFGTITSCKIMRDEKGTSKG-FG 383
Query: 339 FVHFAERSSAMKAL 352
FV ++ A KA+
Sbjct: 384 FVCYSSPEEATKAV 397
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 8/113 (7%)
Query: 85 AQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIG 144
AQK + +EE++ K E+ K +L G+ +Y+ + D DD LR + G
Sbjct: 312 AQKKAEREEELR-----KSYEQAKMEKLSKY--QGANLYIKNLEDDMDDDKLRAEFEPFG 364
Query: 145 EVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ 197
+T +IM+ + G +KG+ FV + + E A++A+ E+N+ L K + S AQ
Sbjct: 365 TITSCKIMR-DEKGTSKGFGFVCYSSPEEATKAVAEMNNKMLGSKPLYVSPAQ 416
>gi|255731137|ref|XP_002550493.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
gi|240132450|gb|EER32008.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
Length = 633
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 125/260 (48%), Gaps = 18/260 (6%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
+ + +Y+G + ++ L IG+V+ +R+ + S ++ GYA+V + E +A
Sbjct: 47 NSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDGEKA 106
Query: 178 IEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
IEELN ++G+ + +Q +FI N+ + + G ++S
Sbjct: 107 IEELNYTPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGK-ILS 165
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSA 289
++ D Q++ F F+ Y AE + + ++ L+D V + S
Sbjct: 166 CKVATD--ELGQSKCFGFVHYETAEAAEAAIENVNG--MLLNDREVFVGKHISKKDRESK 221
Query: 290 ASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAER 345
++KA +YVKN+ T++ ++LFA +GKIT + + + G+ + +GFV+F E
Sbjct: 222 FEEMKANFTNIYVKNIDLAYTEEEFEKLFAPYGKITSIYLEKDQDGKSKG-FGFVNFEEH 280
Query: 346 SSAMKALKNTEKYEIDGQVL 365
+A+KA++ EI+GQ +
Sbjct: 281 DAAVKAVEELNDKEINGQKI 300
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 64 EEVEEEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPP----HG 119
EE + V+ EE D I+ QK Y G + K ++ +E KK E + L G
Sbjct: 278 EEHDAAVKAVEELND--KEINGQKIYVGRAQKK---RERMEELKKQYEAIRLEKLAKYQG 332
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+++ + + L K G +T ++M D+G++KG+ FV F T E A++AI
Sbjct: 333 VNLFVKNLDDSIDSEKLEEEFKPFGTITSAKVMV-DDAGKSKGFGFVCFTTPEEATKAIT 391
Query: 180 ELNSCELKGKKIKCSAAQAK 199
E+N + K + + AQ K
Sbjct: 392 EMNQRMVNNKPLYVALAQRK 411
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 86/372 (23%), Positives = 147/372 (39%), Gaps = 55/372 (14%)
Query: 129 HDASDDDLRH-FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
H A D+ H + G++ ++ + G++K + FV + T E A AIE +N L
Sbjct: 145 HPAIDNKALHDTFSAFGKILSCKVAT-DELGQSKCFGFVHYETAEAAEAAIENVNGMLLN 203
Query: 188 ------GKKIKCSAAQAKH--------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
GK I ++K +++ N+ + E++ K G + SI L
Sbjct: 204 DREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLAYTEEEFEKLFAPYGK-ITSIYLE 262
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
KD +++GF F+ + H A + +++++ + ++ V A +
Sbjct: 263 KD--QDGKSKGFGFVNFEEHDAAVKAVEELNDKE--INGQKIYVGRAQKKRERMEELKKQ 318
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
E A Q L+VKNL I ++L+E F G IT + G+ + +GF
Sbjct: 319 YEAIRLEKLAKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSAKVMVDDAGKSKG-FGF 377
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGY 399
V F A KA+ + ++ + L +LA+ + + ++S L
Sbjct: 378 VCFTTPEEATKAITEMNQRMVNNKPLYVALAQRK---------DVRRSQLEQQIQARNQM 428
Query: 400 GMVGGAYGALGAGYVPAGFAQPMVYGRGAA--PGGMAMLPMLLPDGRIGYVLQQPGVQQH 457
M A AG +P F PM YG+ P G P P+ + + G Q
Sbjct: 429 RMQNAA----AAGGLPGQFMPPMFYGQQGFFPPNGRGNAPFPGPNPQ----MMMRGRGQP 480
Query: 458 NPPPQPRSGRGG 469
P PR G G
Sbjct: 481 FPEQWPRPGPNG 492
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 119/262 (45%), Gaps = 19/262 (7%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KGK + +Q + +FI N+ + G ++
Sbjct: 112 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 170
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L++ V + S
Sbjct: 171 SCKVAQD--EFGNSKGYGFVHYETAEAATNAIKHVNG--MLLNEKKVFVGHHIAKKDRQS 226
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIP-PAKPGQERSRYGFVHFA 343
++KA +YVKNL +++ + +ELF +G+IT I + G+ R +GFV+F
Sbjct: 227 KFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRG-FGFVNFV 285
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
+ SA A++ E GQ L
Sbjct: 286 KHESAAAAVEELNDKEYKGQKL 307
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 84 DAQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCK 141
+A KH +G E KV +K + ++ + + + VY+ + + S+++ R +
Sbjct: 198 NAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTEVSNEEFRELFE 257
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
GE+T I + ++G+++G+ FV F E A+ A+EELN E KG+K+ AQ KH
Sbjct: 258 KYGEITSASISRDGETGKSRGFGFVNFVKHESAAAAVEELNDKEYKGQKLYVGRAQKKH 316
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 99/232 (42%), Gaps = 33/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAATNAIKHV 203
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ AK +++ N+ ++ R+ K G +
Sbjct: 204 NGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTEVSNEEFRELFEKYGE-I 262
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S + +D + ++RGF F+ + H A + +++++ ++K V A ++
Sbjct: 263 TSASISRDGETG-KSRGFGFVNFVKHESAAAAVEELNDKEYK--GQKLYVGRAQKKHERE 319
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL DI ++L++LF G IT +
Sbjct: 320 EELRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFISFGNITSARV 371
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 119/260 (45%), Gaps = 18/260 (6%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
H + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +A
Sbjct: 59 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 118
Query: 178 IEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
+E+LN +KG+ + +Q + +FI N+ + ++ G ++S
Sbjct: 119 LEDLNYTSIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFSQFG-NILS 177
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSA 289
++ +D ++G+ F+ Y A + + ++ L+D V + S
Sbjct: 178 CKVAQD--ELGNSKGYGFVHYETAEAANQAIKSVNG--MLLNDKKVFVGHHIAKRDRQSK 233
Query: 290 ASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAER 345
++KA +Y+KN+ + ++ + +LF +G++ I + G+ R +GFV+FA
Sbjct: 234 LEEMKANFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRDENGKSRG-FGFVNFASH 292
Query: 346 SSAMKALKNTEKYEIDGQVL 365
SA KA++ E G+ L
Sbjct: 293 ESAAKAVEELNDKEFHGKKL 312
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 105 EKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYA 164
++ + ++L + + + VY+ I SD++ + GEV I + ++G+++G+
Sbjct: 227 KRDRQSKLEEMKANFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITR-DENGKSRGFG 285
Query: 165 FVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
FV F + E A++A+EELN E GKK+ AQ KH
Sbjct: 286 FVNFASHESAAKAVEELNDKEFHGKKLYVGRAQKKH 321
>gi|70947056|ref|XP_743180.1| polyadenylate-binding protein [Plasmodium chabaudi chabaudi]
gi|56522555|emb|CAH74716.1| polyadenylate-binding protein, putative [Plasmodium chabaudi
chabaudi]
Length = 629
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 129/265 (48%), Gaps = 26/265 (9%)
Query: 115 LPPHGS--EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE 172
+PP S +Y+G + D ++ L ++G V +R+ + + ++ GYA+V +
Sbjct: 9 MPPSFSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLA 68
Query: 173 LASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVT 221
A +A++ LN +KG+ + + HR +F+ N+ + + +
Sbjct: 69 DAERALDTLNYTNIKGQPARLMWS---HRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFS 125
Query: 222 KIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWAD 281
G ++S ++ D ++N G F+ Y + A+ + +K++ +L V
Sbjct: 126 MFG-NILSCKVATDEFGKSKNYG--FVHYEDEESAKEAIEKVNG--MQLGSKNVYVGHFI 180
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
++ ++ ++ LYVKN P +T+ LKELF+ +G+IT +++ K + ++ F++
Sbjct: 181 KKSERATNDTKFTNLYVKNFPDTVTEAHLKELFSPYGEITSMIV---KSDNKNRKFCFIN 237
Query: 342 FAERSSAMKALKNTEKYEI--DGQV 364
+++ SA A++N +I DG++
Sbjct: 238 YSDADSARNAMENLNGKKITEDGKI 262
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G +Y+ + D L+ + G +T ++MK D ++KG+ FV F T E A++A+
Sbjct: 399 GVNLYIKNLDDSMDDQTLKELFEPYGTITSAKVMKD-DKDQSKGFGFVCFGTHEEANKAV 457
Query: 179 EELNSCELKGKKIKCSAAQAK 199
E++ + GK + A+ +
Sbjct: 458 TEMHLKIINGKPLYVGLAEKR 478
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 281 DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFV 340
D N ES LY+KNL + LKELF +G IT + Q + +GFV
Sbjct: 387 DTLNTESRNKHPGVNLYIKNLDDSMDDQTLKELFEPYGTITSAKVMKDDKDQSKG-FGFV 445
Query: 341 HFAERSSAMKALKNTEKYEIDGQVLDCSLA 370
F A KA+ I+G+ L LA
Sbjct: 446 CFGTHEEANKAVTEMHLKIINGKPLYVGLA 475
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 124/265 (46%), Gaps = 27/265 (10%)
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK-- 199
+ G++ ++ + G +KGY FV F + A +AI+ +N E++GK + Q +
Sbjct: 136 AFGKILSCKVATDAN-GVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKRAD 194
Query: 200 ------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNH 253
+F+ N+P + G+D++ K T+ G + S ++KD + + +GF FI + +
Sbjct: 195 RPQDVYTNVFVKNLPADIGDDELGKMATEHGE-ITSAVVMKDDKGGS--KGFGFINFKDA 251
Query: 254 ----ACAEYSRQK-MSNPKF-------KLDDNAPTVSWADPRNAESSAASQVKALYVKNL 301
C EY ++ MS K + A A+ E Q LYVKNL
Sbjct: 252 ESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQERYLKYQGMNLYVKNL 311
Query: 302 PKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFAERSSAMKALKNTEKYEI 360
++ D L+ELFA+ G IT + K G +S+ +GFV F A +A+ +
Sbjct: 312 SDEVDDDALRELFANSGTITSCKV--MKDGSGKSKGFGFVCFTSHDEATRAVTEMNGKMV 369
Query: 361 DGQVLDCSLAKPQADQKTSGGSNSQ 385
G+ L +LA+ + ++ +N Q
Sbjct: 370 KGKPLYVALAQRKDVRRAQLEANMQ 394
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 124/267 (46%), Gaps = 31/267 (11%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTK---E 172
P S +Y+G + D ++ L S+G V +R+ + + + GYA+V + + +
Sbjct: 19 PLANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQ 78
Query: 173 LASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVT 221
A +A+E LN + GK ++ HR +FI N+ + + +
Sbjct: 79 AADRAMETLNYHVVNGKPMRI---MWSHRDPSARKSGVGNIFIKNLDKTIDAKALHDTFS 135
Query: 222 KIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSW 279
G ++S ++ D + +G+ F+ + + A A+ + Q ++ + K+ P
Sbjct: 136 AFGK-ILSCKVATDANGVS--KGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYVGPFQKR 192
Query: 280 AD-PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYG 338
AD P++ ++ ++VKNLP DI D L ++ HG+IT V+ G + +G
Sbjct: 193 ADRPQDVYTN-------VFVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKG-FG 244
Query: 339 FVHFAERSSAMKALKNTEKYEIDGQVL 365
F++F + SA K ++ + E+ G+ L
Sbjct: 245 FINFKDAESAAKCVEYLNEREMSGKTL 271
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 28/158 (17%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ V++ +P D DD+L GE+T +MK D G +KG+ F+ F+ E A++ +E
Sbjct: 201 TNVFVKNLPADIGDDELGKMATEHGEITSAVVMK-DDKGGSKGFGFINFKDAESAAKCVE 259
Query: 180 ELNSCELKGKKIKCSAAQAK------------------------HRLFIGNVPRNWGEDD 215
LN E+ GK + AQ K L++ N+ +D
Sbjct: 260 YLNEREMSGKTLYAGRAQKKTEREAMLRQKAEESKQERYLKYQGMNLYVKNLSDEVDDDA 319
Query: 216 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNH 253
+R+ G + S +++KD + +++GF F+ + +H
Sbjct: 320 LRELFANSGT-ITSCKVMKD--GSGKSKGFGFVCFTSH 354
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
L G +Y+ + + DD LR + G +T ++MK SG++KG+ FV F + + A
Sbjct: 299 LKYQGMNLYVKNLSDEVDDDALRELFANSGTITSCKVMK-DGSGKSKGFGFVCFTSHDEA 357
Query: 175 SQAIEELNSCELKGKKIKCSAAQAK 199
++A+ E+N +KGK + + AQ K
Sbjct: 358 TRAVTEMNGKMVKGKPLYVALAQRK 382
>gi|326432018|gb|EGD77588.1| hypothetical protein PTSG_08685 [Salpingoeca sp. ATCC 50818]
Length = 517
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 10/145 (6%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P ++ DLR K G + ++IM + + ++ GY FV F T E A++AI+ +N +
Sbjct: 91 LPPSVTESDLRELFKPFGTIKAIKIMTDRYTHKSLGYGFVEFETAEEAARAIQAMNGRQY 150
Query: 187 KGKKIKCSAAQAKH------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
K++K S A+ L+I N+PR ED +R G +IS L+ D +
Sbjct: 151 MNKRLKVSIARPSSSSITGANLYIKNLPRTITEDQLRAIFNPFG-EIISARLLYD---GD 206
Query: 241 QNRGFAFIEYYNHACAEYSRQKMSN 265
+G AF+ + ACAE + +++N
Sbjct: 207 VPKGIAFVRFDKRACAERAVAELNN 231
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 119/261 (45%), Gaps = 36/261 (13%)
Query: 199 KHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEY 258
++ L I +P + E D+R+ G + +I+++ D + +++ G+ F+E+ A
Sbjct: 83 RNNLIINYLPPSVTESDLRELFKPFG-TIKAIKIMTD-RYTHKSLGYGFVEFETAEEAAR 140
Query: 259 SRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 318
+ Q M+ ++ + VS A P ++ + A+ LY+KNLP+ IT+D+L+ +F G
Sbjct: 141 AIQAMNGRQYM--NKRLKVSIARPSSSSITGAN----LYIKNLPRTITEDQLRAIFNPFG 194
Query: 319 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQV-LDCS--LAKPQAD 375
+I + G FV F +R+ A +A+ E++ V +CS +A AD
Sbjct: 195 EIISARL--LYDGDVPKGIAFVRFDKRACAERAVA-----ELNNTVPANCSQPIAVKFAD 247
Query: 376 QKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVP--AGFAQPMVYGRGAA--PG 431
+ S SA GM G+ A + +P GF QP A PG
Sbjct: 248 TNRRSRAPSGSSA-----------GMHQGSMMAYPSMPMPYGGGFQQPQPQPTMAPLQPG 296
Query: 432 GMAMLP-MLLPDGRI--GYVL 449
+ M P ML P R GY L
Sbjct: 297 FVPMSPDMLPPSARTPYGYCL 317
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 295 ALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKN 354
L+V NLP + +D LFA+ G + I Q R RYGFV + A A++N
Sbjct: 316 CLFVFNLPPFMDEDGFARLFANFGGVVSASISRKSLSQAR-RYGFVTMRDFGEAATAIQN 374
Query: 355 TEKYEIDGQVLDCSL 369
Y++ G L S
Sbjct: 375 LNDYDVFGYRLSVSF 389
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 125/271 (46%), Gaps = 19/271 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N LKG+ I+ +Q +FI N+ + + + G ++S +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+ D + RGF F+ + H A+ + M+ L+D V R AE
Sbjct: 130 VACDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDRKVFVGHFKSRREREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +YVKNLP D+ + L++LF+ GK+ V + G R +GFV+F +
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A KA+ + E+ G++L A+ + +++
Sbjct: 244 AQKAVVHMNGKEVSGRLLYAGRAQKRVERQN 274
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 91/206 (44%), Gaps = 31/206 (15%)
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH- 200
+ G + ++ D ++G+ FV F T E A QAI +N L +K+ +++
Sbjct: 121 TFGNILSCKV--ACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 201 -------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAF 247
+++ N+P + E ++ ++ G ++S+++++D N+ +R F F
Sbjct: 179 REAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGK-MLSVKVMRD--NSGHSRCFGF 235
Query: 248 IEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA---------- 295
+ + H A+ + M+ + +L + +N Q+K
Sbjct: 236 VNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVN 295
Query: 296 LYVKNLPKDITQDRLKELFAHHGKIT 321
LYVKNL I D+L++ F+ +G IT
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVIT 321
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
+++ AEL A + +Y+ +P D + L+ G++ V++M+ +SG ++ + F
Sbjct: 177 REREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR-DNSGHSRCFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V F E A +A+ +N E+ G+ + AQ +
Sbjct: 236 VNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKR 269
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 129/271 (47%), Gaps = 19/271 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KG+ ++ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+ F+ + AE + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +D+ D+LK++F+ +G + + + G+ R +GFV F
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRG-FGFVSFERHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A +A+ E++G+++ A+ + +++T
Sbjct: 244 AQRAVDEMNGKEMNGKLIYVGRAQKKVERQT 274
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 131/332 (39%), Gaps = 44/332 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + +++ D +KGY FV F T+E A +AIE++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + A+ + F +N+GED ++ +K G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYG-NA 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS----NPKF--------KLDDNAP 275
+SI ++ D ++RGF F+ + H A+ + +M+ N K K++
Sbjct: 218 MSIRVMTD--ENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ + Q LYVKNL I +RL++ F+ G IT + G
Sbjct: 276 LKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV--MMDGGRSK 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK----------PQADQKTSGGSNSQ 385
+GFV F+ A KA+ + + L +LA+ Q Q+ +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVP 393
Query: 386 KSALNPTYP-PHLGYGMVGGAYGALGAGYVPA 416
+NP P P GY M A Y P
Sbjct: 394 NPVINPYQPAPPSGYFMAAIPQAQNRAAYYPT 425
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ D DD L+ G +R+M ++G+++G+ F
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMT-DENGKSRGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V+F E A +A++E+N E+ GK I AQ K
Sbjct: 236 VSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L++ N+ ++ +RK + G +I K + +++GF F+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMDGGRSKGFGFVCF 340
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 85 AQKHYDGDEEMKVA-ESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
AQK + E+K E K D ++ G +Y+ + D+ LR
Sbjct: 266 AQKKVERQTELKRKFEQMKQDRMTRY--------QGVNLYVKNLDDGIDDERLRKEFSPF 317
Query: 144 GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
G +T ++M D G +KG+ FV F + E A++A+ E+N + K + + AQ K
Sbjct: 318 GTITSAKVMM--DGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 129/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTV---SWADPRNAESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDRKVFVGRFKCRREREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +D+ +RLKE F+ +GK V + G+ + +GFV F
Sbjct: 185 AKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKG-FGFVSFERHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+ + +++G+++ A+ + +++
Sbjct: 244 ANKAVDDMNGKDVNGKIMFVGRAQKKVERQ 273
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 99/407 (24%), Positives = 169/407 (41%), Gaps = 56/407 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T++ A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQDAADRAIEKM 158
Query: 182 NSCELKGKKI-----KCSAAQ-----AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ KC + AK + F +N+GED +++ +K G
Sbjct: 159 NGMLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYG-KT 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS----NPKF--------KLDDNAP 275
+S++++ DP + +++GF F+ + H A + M+ N K K++ A
Sbjct: 218 LSVKVMTDP--SGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E + Q LY+KNL I ++L++ F+ G IT AK E
Sbjct: 276 LKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS-----AKVMLEEG 330
Query: 336 R---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSN-SQKSALNP 391
R +GFV F+ A KA+ + + L +LA+ + ++K + Q+ A
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRIAGMR 390
Query: 392 TYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAML---PMLLPDGR---- 444
P + A G VP ++P Y AP MA + P GR
Sbjct: 391 ALPANTLINQFQPAPGGYFVPAVPQTQSRPTYY----APNHMAQIRPGPRWQQTGRPQGF 446
Query: 445 --IGYVLQQPGVQQ---HNPPPQPRSGRGGAGSSSSGGRRSTDNGRG 486
+ L+ G +Q H PP + RG G + G S+ G
Sbjct: 447 QPMPNTLRHSGPRQSLRHMPPSNAQGTRGIPGVTQRVGVSSSTQTMG 493
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
+++ AEL A + VY+ D D+ L+ G+ V++M SG++KG+ F
Sbjct: 177 REREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTLSVKVMT-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V+F E A++A++++N ++ GK + AQ K
Sbjct: 236 VSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEEGRSKGFGFVCF 340
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 119/262 (45%), Gaps = 18/262 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + +Y+G + ++ L IG V +R+ + + + GYA+V + T
Sbjct: 60 PQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTSDGE 119
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+EELN +KG+ + +Q + +FI N+ + G +
Sbjct: 120 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 178
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ +D +N N ++G+ F+ Y A + + ++ L++ V P+
Sbjct: 179 LSCKVAQD-ENGN-SKGYGFVHYETDEAASQAIKHVNG--MLLNEKKVYVGHHIPKKDRQ 234
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S ++KA +Y+KN+ ++T D ++LF G +T + + G+ R +GFV+F
Sbjct: 235 SKFEEMKANFTNIYIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQEGKSRG-FGFVNFT 293
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
+A KA+ + + GQ L
Sbjct: 294 THEAAAKAVDDLNGKDFRGQDL 315
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 99/232 (42%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + ++G +KGY FV + T E ASQAI+ +
Sbjct: 154 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAASQAIKHV 212
Query: 182 NSCELKGKKIKCSA------AQAKH--------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ Q+K ++I N+ +D+ R T G V
Sbjct: 213 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYIKNISGEVTDDEFRDLFTPFG-DV 271
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D + ++RGF F+ + H A + ++ F+ D V A ++
Sbjct: 272 TSSSLARDQEG--KSRGFGFVNFTTHEAAAKAVDDLNGKDFRGQD--LYVGRAQKKHERE 327
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E + Q LY+KNL D+ ++L++LFA G IT +
Sbjct: 328 EELRKSYEAARMEKANKYQGVNLYIKNLDDDVDDEKLRQLFADFGPITSAKV 379
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 83/177 (46%), Gaps = 28/177 (15%)
Query: 85 AQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKS 142
A KH +G E KV +K + ++ + + + +Y+ I + +DD+ R
Sbjct: 208 AIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYIKNISGEVTDDEFRDLFTP 267
Query: 143 IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH-- 200
G+VT + + ++ G+++G+ FV F T E A++A+++LN + +G+ + AQ KH
Sbjct: 268 FGDVTSSSLARDQE-GKSRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHER 326
Query: 201 ----------------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L+I N+ + ++ +R+ GP + S ++++D
Sbjct: 327 EEELRKSYEAARMEKANKYQGVNLYIKNLDDDVDDEKLRQLFADFGP-ITSAKVMRD 382
>gi|348523083|ref|XP_003449053.1| PREDICTED: nucleolin-like isoform 3 [Oreochromis niloticus]
Length = 658
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 135/297 (45%), Gaps = 39/297 (13%)
Query: 93 EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIM 152
E+ + E +D +K+K A L ++ +P A+ DDL+ K + E+R+
Sbjct: 312 EKARSKEGSQDSKKEKDARTL---------FVKNLPFSATADDLKEIFK---DAVEIRVP 359
Query: 153 KGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------- 199
G+++ KG A+V F+T+ A + +EE E++G+ I K
Sbjct: 360 PGQNTSN-KGIAYVEFKTEADAERTMEETQGSEVQGRSIIIDYTGEKSHMGARASASEAA 418
Query: 200 -HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEY 258
L + N+ N E+ ++ K +SI + PQ + +GFAF+E+ + A+
Sbjct: 419 SKTLVVNNLSFNATEEVLQSTFEK----AVSIRI---PQRDGRPKGFAFLEFESTDDAKD 471
Query: 259 SRQKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 318
+ + +N + ++ + + ++ R+ + K L+VK L +D T++ LK+ F G
Sbjct: 472 ALENFNNTE--IEGRSIRLEYSQSRDWNRGNSGPTKTLFVKGLSEDTTEETLKDAF--EG 527
Query: 319 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375
+ ++ G + +GFV F+ A + E EIDG + AKP+ +
Sbjct: 528 AVAARIVTDRDTGSSKG-FGFVDFSNEDDCKAAKEAMEDGEIDGSKVTLDYAKPKGE 583
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 121/265 (45%), Gaps = 41/265 (15%)
Query: 122 VYLGGIPHDASDDDLR-----HFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
+++G + D+++ F K+ E+T+VR+ G K + +V F ++E +
Sbjct: 242 LFVGNLNSSKDFDEIKASLRKFFSKNGLEITDVRL------GGNKKFGYVDFASEEDLQK 295
Query: 177 AIEELNSCELKGKKIKCSAAQAK------------HRLFIGNVPRNWGEDDMRKAVTKIG 224
+ ELN ++ G+++K A++K LF+ N+P + DD+++
Sbjct: 296 GL-ELNGKKVMGQEVKLEKARSKEGSQDSKKEKDARTLFVKNLPFSATADDLKEIFKD-- 352
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 284
++E+ P N+G A++E+ A AE + ++ ++ + + + ++
Sbjct: 353 ----AVEIRVPPGQNTSNKGIAYVEFKTEADAERTMEETQGS--EVQGRSIIIDYTGEKS 406
Query: 285 ----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFV 340
S++ + K L V NL + T++ L+ F K + I P + G+ + + F+
Sbjct: 407 HMGARASASEAASKTLVVNNLSFNATEEVLQSTFE---KAVSIRI-PQRDGRPKG-FAFL 461
Query: 341 HFAERSSAMKALKNTEKYEIDGQVL 365
F A AL+N EI+G+ +
Sbjct: 462 EFESTDDAKDALENFNNTEIEGRSI 486
>gi|167391953|ref|XP_001739964.1| nucleolysin TIAR [Entamoeba dispar SAW760]
gi|165896141|gb|EDR23641.1| nucleolysin TIAR, putative [Entamoeba dispar SAW760]
Length = 306
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 122/281 (43%), Gaps = 35/281 (12%)
Query: 113 LALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE 172
+ + + V++ GI + L +G V +IM+ K SG GY FV F
Sbjct: 36 IPINANSKSVHVSGIHESVDEILLGRIFSIVGHVVSCKIMRDK-SGTHAGYGFVEFVDST 94
Query: 173 LASQAIEELNSCELKGKKIKCSAA-------QAKHRLFIGNVPRNWGEDDMRKAVTKIGP 225
A A + ++ + G+++K + + Q +++F+G + +D + K K G
Sbjct: 95 TARFAKDNMDGRVVYGRELKVNWSYTAQQENQGSYKIFVGGLQPEVNDDLLYKTFQKFGR 154
Query: 226 GVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWA----- 280
V ++K Q +++G+ F+ + AE + Q M+ K L+ V+W
Sbjct: 155 -VTDARVLKFTQTG-KSKGYGFVTFIRKEDAETAMQMMNGEK--LEGRNIKVNWVTSNIA 210
Query: 281 ----------DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 330
D N E+S Q +Y+ N+PK++ D LK+L A +G I +V + K
Sbjct: 211 SKTEQPKRSYDEINNETSI--QNCTVYIGNIPKNVESDDLKQLLAEYGSIEEVRLNKDKG 268
Query: 331 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
Y F+ F++ SA A+ I+G L CS +
Sbjct: 269 ------YAFIKFSKHESATSAILMCNGKIINGSTLRCSWGR 303
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
VY+G IP + DDL+ G + EVR+ K K GYAF+ F E A+ AI
Sbjct: 234 VYIGNIPKNVESDDLKQLLAEYGSIEEVRLNKDK------GYAFIKFSKHESATSAILMC 287
Query: 182 NSCELKGKKIKCSAAQAKH 200
N + G ++CS + H
Sbjct: 288 NGKIINGSTLRCSWGRESH 306
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 70/153 (45%), Gaps = 9/153 (5%)
Query: 227 VISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE 286
V+S ++++D + + G+ F+E+ + A +++ M + V+W+ E
Sbjct: 69 VVSCKIMRD--KSGTHAGYGFVEFVDSTTARFAKDNMDGRV--VYGRELKVNWSYTAQQE 124
Query: 287 SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKV-VIPPAKPGQERSRYGFVHFAER 345
+ + ++ +V L ++ D L + F G++T V+ + G+ + YGFV F +
Sbjct: 125 NQGSYKI---FVGGLQPEVNDDLLYKTFQKFGRVTDARVLKFTQTGKSKG-YGFVTFIRK 180
Query: 346 SSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A A++ +++G+ + + KT
Sbjct: 181 EDAETAMQMMNGEKLEGRNIKVNWVTSNIASKT 213
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 116/261 (44%), Gaps = 17/261 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 51 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KGK + +Q + +FI N+ + G ++
Sbjct: 111 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 169
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L++ V + S
Sbjct: 170 SCKVAQD--EFGNSKGYGFVHYETAEAATNAIKHVNG--MLLNEKKVFVGHHIAKKDRQS 225
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +YVKNL ++T + +ELF +G+IT + + +GFV+F
Sbjct: 226 KFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVN 285
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
SA A+++ E GQ L
Sbjct: 286 HDSAAAAVEDLNDKEYKGQKL 306
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 29/230 (12%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 144 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAATNAIKHV 202
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ AK +++ N+ ++ R+ K G +
Sbjct: 203 NGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFEKYGE-I 261
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACA----------EYSRQKM--SNPKFKLDDNAP 275
S L +D + ++RGF F+ + NH A EY QK+ + K +
Sbjct: 262 TSASLSRDNETG-KSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEE 320
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
+ E ++ Q LYVKNL DI ++L++LF G IT +
Sbjct: 321 LRKQHEAARVEKASKYQGVNLYVKNLTDDIDDEKLRDLFIGFGNITSARV 370
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 84 DAQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCK 141
+A KH +G E KV +K + ++ + + + VY+ + + ++++ R +
Sbjct: 197 NAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNEEFRELFE 256
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
GE+T + + ++G+++G+ FV F + A+ A+E+LN E KG+K+ AQ KH
Sbjct: 257 KYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKH 315
>gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|125561054|gb|EAZ06502.1| hypothetical protein OsI_28747 [Oryza sativa Indica Group]
gi|125602953|gb|EAZ42278.1| hypothetical protein OsJ_26851 [Oryza sativa Japonica Group]
Length = 456
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 118/256 (46%), Gaps = 20/256 (7%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
+ +Y+G + D L +G V VR+ + ++ + GYA+V F + A++A
Sbjct: 37 QATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARA 96
Query: 178 IEELNSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVIS 229
+E LN + GK I+ S +FI N+ ++ + + G ++S
Sbjct: 97 LEMLNFTPINGKPIRIMYSNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFG-NILS 155
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN----APTVSWADPRNA 285
++ + + +++G+ F+++ A+ + K++ L+D P V + N
Sbjct: 156 CKVAT--EMSGESKGYGFVQFELEEAAQNAISKLNG--MLLNDKKVYVGPFVRKQERENV 211
Query: 286 ESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAER 345
S + +YVKNL + T+D LKE+F G IT VV+ G+ R +GFV+F
Sbjct: 212 --SGNPKFNNVYVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRC-FGFVNFENP 268
Query: 346 SSAMKALKNTEKYEID 361
A +A+++ + D
Sbjct: 269 DDAARAVEDLNGKKFD 284
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/363 (23%), Positives = 150/363 (41%), Gaps = 51/363 (14%)
Query: 95 MKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKG 154
+++ S++D +K + +++ + + L G + ++
Sbjct: 110 IRIMYSNRDPSSRKSG--------AANIFIKNLDKSIDNKALYDTFSVFGNILSCKVAT- 160
Query: 155 KDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKI------------KCSAAQAKHRL 202
+ SGE+KGY FV F +E A AI +LN L KK+ S + +
Sbjct: 161 EMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERENVSGNPKFNNV 220
Query: 203 FIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQK 262
++ N+ + ED++++ K GP + S+ +++ + ++R F F+ + N A + +
Sbjct: 221 YVKNLSESTTEDNLKEIFGKFGP-ITSVVVMR--EGDGKSRCFGFVNFENPDDAARAVED 277
Query: 263 MSNPKFKLDDNAPTVSWADPRN--------------AESSAASQVKALYVKNLPKDITQD 308
++ KF DD V A ++ E++ +Q LY+KNL I D
Sbjct: 278 LNGKKF--DDKEWYVCRAQKKSEREMELKEKFEKNIKEAADKNQGTNLYLKNLDDSIDDD 335
Query: 309 -RLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367
+LKE+FA G IT + G + GFV F A +AL I + L
Sbjct: 336 EKLKEIFADFGTITSCKVMRDLNGVSKGS-GFVAFKSAEDASRALVAMNGKMIGSKPLYV 394
Query: 368 SLAKPQADQKTSGGSNSQKSALNP-TYPPHLGYGM------VGGAYGALGAGYVPAGFAQ 420
+LA+ + +++ +Q S + P PP + M V G L G P F
Sbjct: 395 ALAQRKEERRAR--LQAQFSQMRPMVMPPSVAPRMPMYPPGVPGVGQQLFYGQPPPAFVN 452
Query: 421 PMV 423
P +
Sbjct: 453 PQL 455
>gi|7020334|dbj|BAA91086.1| unnamed protein product [Homo sapiens]
Length = 431
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 17/157 (10%)
Query: 222 KIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWAD 281
K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L + V WA+
Sbjct: 3 KVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAE 62
Query: 282 PR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQ-ERSR--- 336
P + S VK LYV+NL +++ +++ F + KPG ER +
Sbjct: 63 PEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN-----------IKPGAVERVKKIR 111
Query: 337 -YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372
Y FVHF+ R A++A+K +DG ++ +LAKP
Sbjct: 112 DYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 148
>gi|297827151|ref|XP_002881458.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
gi|297327297|gb|EFH57717.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
Length = 609
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 134/278 (48%), Gaps = 27/278 (9%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ +P ++ L+ K G + ++ +D G+++GY FV F ++ A AIE+L
Sbjct: 114 VFVKNLPESITNAVLQDMFKKFGNIVSCKVATFED-GKSRGYGFVQFEQEDAAHAAIEKL 172
Query: 182 NSCELKGKKI-------KCSAAQAKHR---LFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
NS + GK+I K A+A+ + +++ N+ + ED +R+ ++ G ++S+
Sbjct: 173 NSTTVAGKEIYVGKFMKKTDRAKAEEKYTNVYMKNLDADVNEDLLREKFSEFGK-IVSLA 231
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAPTVSW 279
+ KD +G+AF+ + A ++ + M+ +F K +
Sbjct: 232 IAKDENGL--CKGYAFVNFDKPEDARWAAETMNGTRFGSKCLYVGRAQKKAEREQLLREQ 289
Query: 280 ADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
++ E ++V +YVKN+ +T++ L++ F+ G IT + + G+ + +GF
Sbjct: 290 FKEKHEEQMMKAKVSNIYVKNINVGVTEEELRKHFSQCGTITSTKLMCDEKGKSKG-FGF 348
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
V F+ A+ A+K G+ L + A+ + D+K
Sbjct: 349 VCFSTPEEAIDAVKTFHGKMFHGKPLYVATAQKKEDRK 386
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 108/241 (44%), Gaps = 28/241 (11%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
P + +Y+G + ++ L +T VR+ K +G + Y + F +++ A+
Sbjct: 21 PVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASTGRSLCYGYANFLSRQDANL 80
Query: 177 AIEELNSCELKGKKIKC--SAAQAKHR------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
AIE+ N L GK I+ S + R +F+ N+P + ++ K G ++
Sbjct: 81 AIEKKNHSLLNGKMIRVMWSVREPDARRNGVGNVFVKNLPESITNAVLQDMFKKFG-NIV 139
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWAD------- 281
S ++ ++RG+ F+++ A + +K+ N+ TV+ +
Sbjct: 140 SCKVATFED--GKSRGYGFVQFEQEDAAHAAIEKL---------NSTTVAGKEIYVGKFM 188
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
+ + A + +Y+KNL D+ +D L+E F+ GKI + I + G + Y FV+
Sbjct: 189 KKTDRAKAEEKYTNVYMKNLDADVNEDLLREKFSEFGKIVSLAIAKDENGLCKG-YAFVN 247
Query: 342 F 342
F
Sbjct: 248 F 248
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 102 KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAK 161
++ K+KH E + + S +Y+ I ++++LR G +T ++M + G++K
Sbjct: 287 REQFKEKHEEQM-MKAKVSNIYVKNINVGVTEEELRKHFSQCGTITSTKLM-CDEKGKSK 344
Query: 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
G+ FV F T E A A++ + GK + + AQ K
Sbjct: 345 GFGFVCFSTPEEAIDAVKTFHGKMFHGKPLYVATAQKK 382
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 118/264 (44%), Gaps = 18/264 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + ++ L IG V +R+ + + + GYA+V + A +A+E
Sbjct: 173 TSLYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALE 232
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+LN +K K + +Q + +FI N+ + G ++S +
Sbjct: 233 QLNYSLIKNKACRIMWSQRDPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFG-DILSCK 291
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D A+ +G+ F+ Y AE + + ++ +L+D V PR +
Sbjct: 292 VATDEHGAS--KGYGFVHYVTGESAEAAIKGVNG--MQLNDKVVFVGIHVPRRDRQAKID 347
Query: 292 QVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+V++ LY+KNLP + T + L E+F G IT + + G+ R +GFV++ S
Sbjct: 348 EVRSQFTNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRG-FGFVNYENHES 406
Query: 348 AMKALKNTEKYEIDGQVLDCSLAK 371
A KA+ + G VL + A+
Sbjct: 407 ASKAVDALHDKDYKGNVLYVARAQ 430
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 90/377 (23%), Positives = 150/377 (39%), Gaps = 46/377 (12%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G++ ++ + G +KGY FV + T E A AI+ +
Sbjct: 263 IFIKNLDETIDNKALHDTFAAFGDILSCKVAT-DEHGASKGYGFVHYVTGESAEAAIKGV 321
Query: 182 NSCELKGKKIKCSA------AQAK--------HRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N +L K + QAK L+I N+P +++ + K GP +
Sbjct: 322 NGMQLNDKVVFVGIHVPRRDRQAKIDEVRSQFTNLYIKNLPTETTTEELNEVFGKFGP-I 380
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S + D ++RGF F+ Y NH A + + + +K N V+ A R
Sbjct: 381 TSAAVQSDEHG--KHRGFGFVNYENHESASKAVDALHDKDYK--GNVLYVARAQKRTERD 436
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
E++ Q LYVKNL + ++L+ F G IT + + G
Sbjct: 437 AELKKAHEQQKYETTLKYQGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKDEKGTS 496
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLA-KPQADQKTSGGSNSQKSALNPT 392
+ +GFV F+ A KA+ + + L SLA + + ++ SQ+S +
Sbjct: 497 KG-FGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSLAQRKEVRKQQLEAQMSQRSQMRSQ 555
Query: 393 YPPHLGYGMVGGAYGAL-------GAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRI 445
G+ G YGA GA P + M+Y P GM P P G++
Sbjct: 556 Q--IAAAGIPGAPYGAPPNPMYFGGAAAYPPHGGRGMMYPPNGMPAGMPPRPRYAPPGQM 613
Query: 446 GYVLQQPGVQQHNPPPQ 462
+ PG + P PQ
Sbjct: 614 A-PMGMPGGAPYPPHPQ 629
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 90/185 (48%), Gaps = 11/185 (5%)
Query: 195 AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHA 254
A+Q L++G + E + + + IGP V SI + +D ++ G+A++ Y N A
Sbjct: 168 ASQPNTSLYVGELDPTVTEAMLYEIFSMIGP-VASIRVCRD-AVTRRSLGYAYVNYLNAA 225
Query: 255 CAEYSRQKMSNPKFKLDDNAPTVSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKE 312
AE + ++++ K + A + W+ DP ++ + +++KNL + I L +
Sbjct: 226 DAERALEQLNYSLIK--NKACRIMWSQRDPSLRKTGQGN----IFIKNLDETIDNKALHD 279
Query: 313 LFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 372
FA G I + + G + YGFVH+ SA A+K +++ +V+ + P
Sbjct: 280 TFAAFGDILSCKVATDEHGASKG-YGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVP 338
Query: 373 QADQK 377
+ D++
Sbjct: 339 RRDRQ 343
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 8/142 (5%)
Query: 58 EEVEVEEEVEEEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPP 117
E E + + + +++ +V+ AQK + D E+K K E++K+ L
Sbjct: 402 ENHESASKAVDALHDKDYKGNVLYVARAQKRTERDAELK-----KAHEQQKYETTLKY-- 454
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + + D+ L++ G +T ++MK + G +KG+ FV F + + A++A
Sbjct: 455 QGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMK-DEKGTSKGFGFVCFSSPDEATKA 513
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N L K + S AQ K
Sbjct: 514 VAEMNGKMLGSKPLYVSLAQRK 535
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 115/261 (44%), Gaps = 18/261 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 47 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 106
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+E+LN +KG+ + +Q + +FI N+ + G ++
Sbjct: 107 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NIL 165
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L+D V + S
Sbjct: 166 SCKVAQD--EFGNSKGYGFVHYETAEAANNAIKHVNG--MLLNDKKVFVGHHISKKDRQS 221
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +YVKN+ ++T + +ELF +G IT I G+ R +GFV++ +
Sbjct: 222 KFEEMKANFTNVYVKNIDPEVTDEEFRELFGKYGDITSATISRDDSGKSRG-FGFVNYVD 280
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
+A A+ + Q L
Sbjct: 281 HQNAQSAVDELNDKDFHSQKL 301
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 100/230 (43%), Gaps = 30/230 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 140 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DEFGNSKGYGFVHYETAEAANNAIKHV 198
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ +K +++ N+ +++ R+ K G +
Sbjct: 199 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYVKNIDPEVTDEEFRELFGKYG-DI 257
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
S + +D ++ ++RGF F+ Y +H A+ + ++++ F K +
Sbjct: 258 TSATISRD--DSGKSRGFGFVNYVDHQNAQSAVDELNDKDFHSQKLYVGRAQKKHEREEE 315
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
+ E ++ Q LYVKNL D+ D+L+ELF+ G IT +
Sbjct: 316 LRRQYEAARLEKASKYQGVNLYVKNLTDDVDDDKLRELFSPFGTITSAKV 365
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 9/122 (7%)
Query: 84 DAQKHYDG----DEEMKVAES-DKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRH 138
+A KH +G D+++ V K D + K E+ A + + VY+ I + +D++ R
Sbjct: 193 NAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA---NFTNVYVKNIDPEVTDEEFRE 249
Query: 139 FCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQA 198
G++T I + DSG+++G+ FV + + A A++ELN + +K+ AQ
Sbjct: 250 LFGKYGDITSATISR-DDSGKSRGFGFVNYVDHQNAQSAVDELNDKDFHSQKLYVGRAQK 308
Query: 199 KH 200
KH
Sbjct: 309 KH 310
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 56/163 (34%)
Query: 85 AQKHYDGDEEMKVA-ESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
AQK ++ +EE++ E+ + ++ K+ G +Y+ + D DD LR
Sbjct: 306 AQKKHEREEELRRQYEAARLEKASKY--------QGVNLYVKNLTDDVDDDKLRELFSPF 357
Query: 144 GEVTEVRIMK-------------GKDS--------------------------------- 157
G +T ++M+ GK++
Sbjct: 358 GTITSAKVMRDTVGVSSDSDKEEGKEASEKEGEEASEKEETKVKAEDEEKTETKKPEKKV 417
Query: 158 -GEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
G++KG+ FV F + + AS+A+ E+N + GK + + AQ K
Sbjct: 418 FGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 460
>gi|343959022|dbj|BAK63366.1| ELAV-like protein 1 [Pan troglodytes]
Length = 305
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 118/279 (42%), Gaps = 43/279 (15%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
+P + + D+LR SIGEV ++++ K +G + GY FV + T + A +AI LN L
Sbjct: 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL 86
Query: 187 KGKKIKCSAAQAKH------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNAN 240
+ K IK S A+ L+I +PR + D+ ++ G + S LV Q
Sbjct: 87 QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVD--QTTG 144
Query: 241 QNRGFAFIEYYNHACAE-----------------YSRQKMSNP--------KFKLD---- 271
+RG AFI + + AE + + +NP +F+
Sbjct: 145 LSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNPVHHQAQRFRFSPMGV 204
Query: 272 DNAPTVSWAD-PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKP 330
D+ +S + P NA S +++ NL +D + L ++F G +T V +
Sbjct: 205 DHMSGLSGVNVPGNASSGW-----CIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFN 259
Query: 331 GQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSL 369
+ +GFV A A+ + Y + ++L S
Sbjct: 260 TNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSF 298
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G +++ + DA + L G VT V++++ ++ + KG+ FVT E A+ AI
Sbjct: 222 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 281
Query: 179 EELNSCELKGKKIKCS 194
LN L K ++ S
Sbjct: 282 ASLNGYRLGDKILQVS 297
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
L V LP+++TQD L+ LF+ G++ + K YGFV++ A +A+
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 356 EKYEIDGQVLDCSLAKPQAD 375
+ + + S A+P ++
Sbjct: 82 NGLRLQSKTIKVSYARPSSE 101
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 126/270 (46%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KG+ I+ +Q L FI N+ + + + G ++S +
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D + RGF F+ + H A+ + + M+ L+D V R AE
Sbjct: 130 VVCDDHGS---RGFGFVHFETHEAAQNAIRTMNG--MLLNDRKVFVGHFKSRREREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +YVKNL D+ + L++LF+ GKI V + G R +GFV+F +
Sbjct: 185 ARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRG-FGFVNFEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+ + E+ G++L A+ + +++
Sbjct: 244 AQKAVTDMNGKEVSGRLLYVGRAQKRVERQ 273
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 120/282 (42%), Gaps = 33/282 (11%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D ++G+ FV F T E A AI +
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVC--DDHGSRGFGFVHFETHEAAQNAIRTM 158
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L +K+ +++ +++ N+ + E ++ ++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFG-KI 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSWADPRNA 285
+S+++++D ++ +RGF F+ + H A+ + M+ + +L + +N
Sbjct: 218 LSVKVMRD--DSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNE 275
Query: 286 ESSAASQVKA----------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
Q+K LYVKNL I ++L++ FA +G IT + G
Sbjct: 276 LKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKV--MTEGGHSK 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERK 375
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV +++ AEL A + +Y+ + D + L+ G++ V++M+
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMR-D 225
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
DSG ++G+ FV F E A +A+ ++N E+ G+ + AQ +
Sbjct: 226 DSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKR 269
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 85 AQKHYDGDEEMKV-AESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
AQK + E+K E K D ++ G +Y+ + D+ LR
Sbjct: 266 AQKRVERQNELKRRFEQMKQDRLTRY--------QGVNLYVKNLDDSIDDEKLRKEFAPY 317
Query: 144 GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
G +T ++M + G +KG+ FV F + E A++A+ E+N + K + + AQ K
Sbjct: 318 GMITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 371
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 122/268 (45%), Gaps = 18/268 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + + +Y+G + ++ L IG V +R+ + + + GYA+V + +
Sbjct: 56 PQNSASLYVGELDPAVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTADGE 115
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+EELN +KG+ + +Q + +FI N+ + G +
Sbjct: 116 KALEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 174
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ +D +N N ++G+ F+ Y A + + ++ L++ V P+
Sbjct: 175 LSCKVAQD-ENGN-SKGYGFVHYETDEAAAQAIKHVNG--MLLNEKKVYVGHHIPKKDRQ 230
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S ++KA +YVKN+ + T+D ++LF +G +T + + G+ R +GFV+F
Sbjct: 231 SKFEEMKANFTNVYVKNISPEATEDDFRQLFEQYGDVTSSSLARDQEGKSRG-FGFVNFT 289
Query: 344 ERSSAMKALKNTEKYEIDGQVLDCSLAK 371
SA KA+ + GQ L A+
Sbjct: 290 THESAAKAVDELNGKDFRGQDLYVGRAQ 317
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 87/177 (49%), Gaps = 28/177 (15%)
Query: 85 AQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKS 142
A KH +G E KV +K + ++ + + + VY+ I +A++DD R +
Sbjct: 204 AIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNISPEATEDDFRQLFEQ 263
Query: 143 IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH-- 200
G+VT + + ++ G+++G+ FV F T E A++A++ELN + +G+ + AQ KH
Sbjct: 264 YGDVTSSSLARDQE-GKSRGFGFVNFTTHESAAKAVDELNGKDFRGQDLYVGRAQKKHER 322
Query: 201 ----------------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L+I N+ + +D +R+ ++ GP + S ++++D
Sbjct: 323 EEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDKLRQMFSEFGP-ITSAKVMRD 378
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 101/232 (43%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + ++G +KGY FV + T E A+QAI+ +
Sbjct: 150 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETDEAAAQAIKHV 208
Query: 182 NSCELKGKKIKCSA------AQAKH--------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ Q+K +++ N+ EDD R+ + G V
Sbjct: 209 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNISPEATEDDFRQLFEQYG-DV 267
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D + ++RGF F+ + H A + +++ F+ D V A ++
Sbjct: 268 TSSSLARDQEG--KSRGFGFVNFTTHESAAKAVDELNGKDFRGQD--LYVGRAQKKHERE 323
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E + Q LY+KNL D+ D+L+++F+ G IT +
Sbjct: 324 EELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDDKLRQMFSEFGPITSAKV 375
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 129/272 (47%), Gaps = 20/272 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L ++ G V +R+ + + + GYA+V F+ A +A++
Sbjct: 2 ASLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALD 61
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q + +FI N+ R+ + + G ++S +
Sbjct: 62 TMNFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFG-NILSCK 120
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE----S 287
+V D N ++GF F+ Y + A+ + +K++ ++D V+ RN
Sbjct: 121 VVCD---INGSKGFGFVHYESDESAQRAIEKVNG--MLMEDKKVFVARFKSRNDRMREFG 175
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGK-ITKVVIPPAKPGQERSRYGFVHFAERS 346
AA L+VKNLP D L E F G+ ++ VI G + +GF+ F E
Sbjct: 176 DAAKHFTNLFVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTGLSKC-HGFISFKEHD 234
Query: 347 SAMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A A++ + EI+G+ L C A+ +A++ +
Sbjct: 235 QAEAAVEIMHEKEIEGKKLYCGRAQKKAERSS 266
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 120/282 (42%), Gaps = 31/282 (10%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L S G + +++ D +KG+ FV + + E A +AIE++
Sbjct: 92 VFIKNLDRSIDNKALYDTFSSFGNILSCKVVC--DINGSKGFGFVHYESDESAQRAIEKV 149
Query: 182 NSCELKGKKIKCSAAQ------------AKH--RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N ++ KK+ + + AKH LF+ N+P +W D + + + G V
Sbjct: 150 NGMLMEDKKVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWDTDALLENFEQFGE-V 208
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S +++ D + ++ FI + H AE + + M + K + ++
Sbjct: 209 VSHKVICD-ETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSE 267
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ + E Q LYVKNL I + L+E F G IT + G+ +
Sbjct: 268 LKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITDLNGRSKG 327
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+GFV F+ A KA+ G+ L LA+ + D+K
Sbjct: 328 -FGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDRK 368
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 73/157 (46%), Gaps = 27/157 (17%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
H + +++ +P D L + GEV +++ + +G +K + F++F+ + A A
Sbjct: 180 HFTNLFVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAA 239
Query: 178 IEELNSCELKGKKIKCSAAQAKH------------------------RLFIGNVPRNWGE 213
+E ++ E++GKK+ C AQ K L++ N+ + +
Sbjct: 240 VEIMHEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDD 299
Query: 214 DDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
+ +R+A + G + S +++ D +++GF F+ +
Sbjct: 300 EGLREAFKQFG-NITSAKVITDLN--GRSKGFGFVCF 333
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 9/146 (6%)
Query: 54 VEEEEEVEVEEEVEEEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELL 113
+ +E + E VE E+E E + + G AQK + E+K E+ + +
Sbjct: 228 ISFKEHDQAEAAVEIMHEKEIEGKKLYCG-RAQKKAERSSELKAKYEKIKQERIQRYQ-- 284
Query: 114 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKEL 173
G +Y+ + D+ LR K G +T +++ + G +KG+ FV F + E
Sbjct: 285 -----GVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITDLN-GRSKGFGFVCFSSPEE 338
Query: 174 ASQAIEELNSCELKGKKIKCSAAQAK 199
A++A+ E+N GK + AQ K
Sbjct: 339 ATKAVTEMNGRIFGGKPLYVGLAQRK 364
>gi|224104133|ref|XP_002313332.1| predicted protein [Populus trichocarpa]
gi|222849740|gb|EEE87287.1| predicted protein [Populus trichocarpa]
Length = 415
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 149/337 (44%), Gaps = 56/337 (16%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++G + + A + L GEV ++I++ K +G+ +GY FV F + A + ++
Sbjct: 22 LWIGDLQYWADESYLTSCFAHTGEVVSIKIIRNKLTGQPEGYGFVEFVSHAAAERILQTY 81
Query: 182 NSCELKGK----KIKCSA---------AQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
N ++ G ++ ++ A +H +F+G++ + + +++ P V
Sbjct: 82 NGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRVHYPSVR 141
Query: 229 SIELVKDPQNANQNRGFAFIEYY-----NHACAEYS---------RQKMSNPK----FKL 270
++V DP N +++G+ F+++ N A E + R M+ PK F+
Sbjct: 142 GAKVVTDP-NTGRSKGYGFVKFADENERNRAMTEMNGVFCSTRPMRISMATPKKTTSFQQ 200
Query: 271 DDNAPTVSWADPRNAESSAASQVKA--------LYVKNLPKDITQDRLKELFAHHGKITK 322
P + P A ++ V A ++V NL + T++ L++ F G+I
Sbjct: 201 QYAVPKAFYPAP--AYTAPVQVVSADGDVTNTTIFVGNLDPNATEEDLRQTFLQLGEIAS 258
Query: 323 VVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGS 382
V IP + GFV FA R+SA +A++ + + I Q + S K Q T G
Sbjct: 259 VKIPAGRGC------GFVQFATRTSAEEAIQRMQGHVIGQQPVRISWGKKQDLTATWGQQ 312
Query: 383 NSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFA 419
Q +A + GYG AY A G + P+ +A
Sbjct: 313 VDQWNA-------YYGYGQGYDAY-AYGGTHDPSLYA 341
>gi|409045875|gb|EKM55355.1| hypothetical protein PHACADRAFT_255926 [Phanerochaete carnosa
HHB-10118-sp]
Length = 672
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 121/274 (44%), Gaps = 18/274 (6%)
Query: 115 LPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELA 174
LP + +Y+G + S+ L IG V +R+ + + + GYA+V +
Sbjct: 44 LPSPSASLYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADG 103
Query: 175 SQAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPG 226
+A+E+LN +KG+ + +Q + +FI N+ + G
Sbjct: 104 ERALEQLNYSLIKGRACRIMWSQRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFG-N 162
Query: 227 VISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE 286
V+S ++ D Q +++G+ F+ Y AE + + ++ L+D V +
Sbjct: 163 VLSCKVATDEQ--GRSKGYGFVHYETAEAAETAIKAVNG--MLLNDKKVYVGHHISKKER 218
Query: 287 SSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHF 342
S +++A +YVKNL +++ + +LF G +T VI + G + +GFV+F
Sbjct: 219 QSKLDEIRAQFTNIYVKNLDPEVSLEEFTQLFEQFGNVTSAVIQTDEEGNSKG-FGFVNF 277
Query: 343 AERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
A A+ E +G+ L S A+ +A++
Sbjct: 278 EFHEEAQNAVDGLHDTEYNGRKLFVSRAQKKAER 311
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 108/274 (39%), Gaps = 27/274 (9%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G V ++ + G +KGY FV + T E A AI+ +
Sbjct: 139 IFIKNLDEAIDNKALHDTFAAFGNVLSCKVAT-DEQGRSKGYGFVHYETAEAAETAIKAV 197
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ +K +++ N+ ++ + + G V
Sbjct: 198 NGMLLNDKKVYVGHHISKKERQSKLDEIRAQFTNIYVKNLDPEVSLEEFTQLFEQFG-NV 256
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHAC--------AEYSRQKM--SNPKFKLDDNAPTV 277
S + D + ++ GF E++ A EY+ +K+ S + K +
Sbjct: 257 TSAVIQTDEEGNSKGFGFVNFEFHEEAQNAVDGLHDTEYNGRKLFVSRAQKKAEREEELR 316
Query: 278 SWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRY 337
+ E + Q LY+KNL +I +RL+ F G IT + + G + +
Sbjct: 317 KSYEHAKMEKMSKYQGVNLYIKNLDDEIDDERLRAEFEPFGTITSAKVMRDEKGSSKG-F 375
Query: 338 GFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
GFV F+ A KA+ I + L SLA+
Sbjct: 376 GFVCFSSPDEATKAVAEMNNKMIGAKPLYVSLAQ 409
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 73/137 (53%), Gaps = 11/137 (8%)
Query: 71 EEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKK-------HAELLALPPH-GSEV 122
E EE ++ VDG+ Y+G ++ V+ + K E+++ HA++ + + G +
Sbjct: 278 EFHEEAQNAVDGLH-DTEYNG-RKLFVSRAQKKAEREEELRKSYEHAKMEKMSKYQGVNL 335
Query: 123 YLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN 182
Y+ + + D+ LR + G +T ++M+ + G +KG+ FV F + + A++A+ E+N
Sbjct: 336 YIKNLDDEIDDERLRAEFEPFGTITSAKVMR-DEKGSSKGFGFVCFSSPDEATKAVAEMN 394
Query: 183 SCELKGKKIKCSAAQAK 199
+ + K + S AQ +
Sbjct: 395 NKMIGAKPLYVSLAQRR 411
>gi|162312303|ref|NP_596601.2| mRNA processing factor (predicted) [Schizosaccharomyces pombe
972h-]
gi|26401571|sp|O60176.2|YG41_SCHPO RecName: Full=Uncharacterized RNA-binding protein C23E6.01c
gi|157310462|emb|CAB83010.2| mRNA processing factor (predicted) [Schizosaccharomyces pombe]
Length = 473
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 103/463 (22%), Positives = 185/463 (39%), Gaps = 61/463 (13%)
Query: 20 PTEREKPIESEERVDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDV 79
PTE E + E +DE + + V+ E+++ EV+ + + +E +++D
Sbjct: 5 PTESEI-LPKESHNSIDEQSQQPANTDTLVKDNSFNEQDDQEVDNDYKSN-DEPVQSQDP 62
Query: 80 VDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHF 139
+ A E S +D+ + L ++G + ++ ++
Sbjct: 63 ISPNMASNESGNSENTSNYGSSRDENVYQKTTL----------WMGELEPWVTEAFIQQV 112
Query: 140 CKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE-------------ELNSCEL 186
++G+ +V++++ + +G GY FV F + AS A+ +LN
Sbjct: 113 WNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLFKLNWASG 172
Query: 187 KGKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFA 246
G + K + +++ +F+G++ N E D+ S +++ DPQ N +RG+
Sbjct: 173 GGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQ-TNVSRGYG 231
Query: 247 FIEYYN-----HACAEYS---------RQKMSNPKFKLDDNAPT--VSWADPRNAESSAA 290
F+ + + A AE R ++ PK K +P V + P SAA
Sbjct: 232 FVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAA 291
Query: 291 SQV--------KALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHF 342
V ++V L K ++++ LK LF + G+I V IPP K GFV F
Sbjct: 292 QPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGK------GCGFVQF 345
Query: 343 AERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMV 402
R SA A+ + Y + + S + Q + + N Q T P + +
Sbjct: 346 VNRQSAEIAINQLQGYPLGNSRIRLSWGRNQ-NPIAAPALNYQSQVSQTTIPATSLFPAM 404
Query: 403 GGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAM---LPMLLPD 442
A + Y PA P+ AP GM + P L+PD
Sbjct: 405 SLPPQAQFSPY-PAVAPSPLALQTRGAPIGMEISIGSPALVPD 446
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 121/276 (43%), Gaps = 30/276 (10%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + D + L G + +I + +G +KG+ FV F + E A +AI+ +
Sbjct: 130 IFIKNLHADIDNKALHDTFSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREAIDAI 189
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L G+++ K A+A ++I N+ E + + K+ P V
Sbjct: 190 NGMLLNGQEVYVAPHVSRKDRQSKLEEAKANFTNVYIKNISLETPEQEFEEFFKKVAP-V 248
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
S+ L KD + + RGF F+ Y HA A + ++++ +F K +
Sbjct: 249 TSVHLEKDSEG--KLRGFGFVNYETHAGAAKAVEELNGVEFHGQQLHVGRAQKKYERQQE 306
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E Q L++KNL I +RL+E F+ G IT V + + G+ +
Sbjct: 307 LRRQYEQSKLEKMEKYQGVNLFIKNLDDSIDDERLREEFSPFGTITSVKVMTTENGKSKG 366
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK 371
+GFV F+ A KA+ + + G+ L ++A+
Sbjct: 367 -FGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 401
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 114/262 (43%), Gaps = 13/262 (4%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + S+ L IG V+ +R+ + + + GYA+V F E QAIE
Sbjct: 40 ASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDYEAGRQAIE 99
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+LN +KG+ + +Q +FI N+ + + + G ++S +
Sbjct: 100 KLNYTPIKGQPCRIMWSQRDPSLRKKGSGNIFIKNLHADIDNKALHDTFSVFG-NILSCK 158
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDD--NAPTVSWADPRNAESSA 289
+ D N ++GF F+ + + A + ++ + AP VS D ++ A
Sbjct: 159 IATDEVTGN-SKGFGFVHFESDEAAREAIDAINGMLLNGQEVYVAPHVSRKDRQSKLEEA 217
Query: 290 ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
+ +Y+KN+ + + +E F +T V + G+ R +GFV++ + A
Sbjct: 218 KANFTNVYIKNISLETPEQEFEEFFKKVAPVTSVHLEKDSEGKLRG-FGFVNYETHAGAA 276
Query: 350 KALKNTEKYEIDGQVLDCSLAK 371
KA++ E GQ L A+
Sbjct: 277 KAVEELNGVEFHGQQLHVGRAQ 298
>gi|357149687|ref|XP_003575198.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Brachypodium distachyon]
Length = 421
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 135/309 (43%), Gaps = 42/309 (13%)
Query: 133 DDDLRHFCKS-IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL----K 187
D++ H C GEV +++++ + SG ++GY FV F + A +A++ + +
Sbjct: 111 DENYLHSCFGPSGEVVTIKVIRNRHSGVSEGYGFVEFYSHASAEKALQNFAGHVMPNTDR 170
Query: 188 GKKI---------KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
K+ K S + H +F+G++ + +D + + V +++ D N
Sbjct: 171 AFKLNWASYSVGEKRSELASDHSIFVGDLAVDVTDDMLMELFANKYRSVKGAKVIIDA-N 229
Query: 239 ANQNRGFAFIEY-----YNHACAEYSRQKMSNPKFKLDDNAPTVSWAD-----PRNAESS 288
++RG+ F+ + HA E + S ++ P + D PR ++
Sbjct: 230 TGRSRGYGFVRFGDDNDRTHAMTEMNGVYCSTRPIRIGPATPRRTSGDSGSSPPRQSDGD 289
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
+ + +YV L ++++D L++ FA +G + V IP K + GFV F R+ A
Sbjct: 290 LTN--RTVYVGGLDPNVSEDELRKTFAKYGDVASVKIPVGK------QCGFVQFVNRADA 341
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYG-------- 400
+AL+ I Q + S + A ++ G S +++ + P + GYG
Sbjct: 342 EEALQALSGSTIGKQAVRLSWGRSPASKQPRGDSGHRRNGMYYGTPFYGGYGYASPVPHP 401
Query: 401 -MVGGAYGA 408
M AYGA
Sbjct: 402 NMYAAAYGA 410
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
VY+GG+ + S+D+LR G+V V+I GK G FV F + A +A++ L
Sbjct: 295 VYVGGLDPNVSEDELRKTFAKYGDVASVKIPVGKQCG------FVQFVNRADAEEALQAL 348
Query: 182 NSCELKGKKIKCSAAQA 198
+ + + ++ S ++
Sbjct: 349 SGSTIGKQAVRLSWGRS 365
>gi|354466116|ref|XP_003495521.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
gi|344243583|gb|EGV99686.1| Polyadenylate-binding protein 4-like [Cricetulus griseus]
Length = 370
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 132/271 (48%), Gaps = 17/271 (6%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
+ +Y+G + D ++D L ++G V +RI + S + GYA+V F + A +A
Sbjct: 8 RAASLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSLGYAYVNFLQLDDAQKA 67
Query: 178 IEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVIS 229
++ +N ++GK I+ +Q L FI N+ ++ + + + G ++S
Sbjct: 68 LDTMNFDLIQGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGK-ILS 126
Query: 230 IELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES-- 287
+++ D + + RG+ F+ Y + + A+ + ++M N K D + ++ E+
Sbjct: 127 SKVMSDEEGS---RGYGFVHYQDQSAADRAIEEM-NGKLLRDCTVFVDRFKSRKDREAEL 182
Query: 288 -SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERS 346
S S+ +Y+KNL ++ + LK +F+ +G+ V + G+ + +GFV F
Sbjct: 183 RSKTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKDDNGKSKG-FGFVSFYNHE 241
Query: 347 SAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+A A++ +I+GQ + A+ + +++
Sbjct: 242 AARNAVEEMNGQDINGQTIFVGRAQKKVERQ 272
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 29/171 (16%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K + AEL + + VY+ + + D+ L++ G+ V++MK D+G++KG+ F
Sbjct: 176 KDREAELRSKTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMK-DDNGKSKGFGF 234
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V+F E A A+EE+N ++ G+ I AQ K +
Sbjct: 235 VSFYNHEAARNAVEEMNGQDINGQTIFVGRAQKKVERQAELKEKFEQMKKERIRARQAAK 294
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYN 252
L+I N+ ++ +R+ + G SI VK Q A Q++GF I +++
Sbjct: 295 LYIKNLDETIDDETLRREFSSFG----SICRVKVMQEAGQSKGFGLICFFS 341
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 111/247 (44%), Gaps = 33/247 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L G++ ++M D ++GY FV ++ + A +AIEE+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKILSSKVMS--DEEGSRGYGFVHYQDQSAADRAIEEM 157
Query: 182 N-----SC-----ELKGKKIKCSAAQAKH----RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N C K +K + + ++K ++I N+ N ++ ++ +K G
Sbjct: 158 NGKLLRDCTVFVDRFKSRKDREAELRSKTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQ-T 216
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++KD +++GF F+ +YNH A + ++M+ K++ A
Sbjct: 217 LSVKVMKDDNG--KSKGFGFVSFYNHEAARNAVEEMNGQDINGQTIFVGRAQKKVERQAE 274
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E A Q LY+KNL + I + L+ F+ G I +V + + GQ +
Sbjct: 275 LKEKFEQMKKERIRARQAAKLYIKNLDETIDDETLRREFSSFGSICRVKVMQ-EAGQSKG 333
Query: 336 RYGFVHF 342
+G + F
Sbjct: 334 -FGLICF 339
>gi|82595449|ref|XP_725855.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481012|gb|EAA17420.1| polyA binding protein-related [Plasmodium yoelii yoelii]
Length = 859
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 129/265 (48%), Gaps = 26/265 (9%)
Query: 115 LPPHGS--EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE 172
+PP S +Y+G + D ++ L ++G V +R+ + + ++ GYA+V +
Sbjct: 9 MPPSFSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLA 68
Query: 173 LASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVT 221
A +A++ LN +KG+ + + HR +F+ N+ + + +
Sbjct: 69 DAERALDTLNYTNIKGQPARLMWS---HRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFS 125
Query: 222 KIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWAD 281
G ++S ++ D ++N G F+ Y + A+ + +K++ +L V
Sbjct: 126 MFG-NILSCKVATDEFGKSKNYG--FVHYEDEESAKEAIEKVNG--MQLGSKNVYVGHFI 180
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
++ ++ ++ LYVKN P +T+ LK+LF+ +G+IT +++ K + ++ F++
Sbjct: 181 KKSERATNDTKFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIV---KSDNKNRKFCFIN 237
Query: 342 FAERSSAMKALKNTEKYEI--DGQV 364
+++ SA A++N +I DG++
Sbjct: 238 YSDADSARNAMENLNGKKITEDGKI 262
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G +Y+ + +D L+ + G +T ++MK D ++KG+ FV F T E A++A+
Sbjct: 409 GVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKD-DKDQSKGFGFVCFGTHEEANKAV 467
Query: 179 EELNSCELKGKKIKCSAAQAK 199
E++ + GK + A+ +
Sbjct: 468 TEMHLKIINGKPLYVGLAEKR 488
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 281 DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGF 339
D N ES LY+KNL + LKELF +G IT + K +++S+ +GF
Sbjct: 397 DTLNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKV--MKDDKDQSKGFGF 454
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370
V F A KA+ I+G+ L LA
Sbjct: 455 VCFGTHEEANKAVTEMHLKIINGKPLYVGLA 485
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 125/270 (46%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KG+ I+ +Q +FI N+ + + + G ++S +
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D + RGF F+ + H A+ + M+ L+D V R AE
Sbjct: 130 VVCDDHGS---RGFGFVHFETHEAAQQAISTMNG--MLLNDRKVFVGHFKSRREREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A+ +YVKNLP + + L++LF+ GK+ V + G R +GFV+F +
Sbjct: 185 ARATAFTNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSGHSRG-FGFVNFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+ + ++ G++L A+ + +++
Sbjct: 244 AQKAVMDMNGMQVSGRLLYVGRAQKRGERQ 273
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 120/284 (42%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D ++G+ FV F T E A QAI +
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVC--DDHGSRGFGFVHFETHEAAQQAISTM 158
Query: 182 NSCELKGKKIKC--------------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L +K+ + A A +++ N+P + E ++ ++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARATAFTNIYVKNLPGHVDERGLQDLFSQFGK-M 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S+++++D ++ +RGF F+ + H A+ + M+ ++ V A R
Sbjct: 218 LSVKVMRD--DSGHSRGFGFVNFEKHEEAQKAVMDMNG--MQVSGRLLYVGRAQKRGERQ 273
Query: 288 SAA--------------SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
+ Q LYVKNL I ++L++ F+ +G IT + G
Sbjct: 274 NELKRRFEHTKQDRLNRCQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKV--MTEGGH 331
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+GFV F+ A KA+ I + L +LA+ + ++K
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVALAQRKEERK 375
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV +++ AEL A + +Y+ +P + L+ G++ V++M+
Sbjct: 167 KVFVGHFKSRREREAELGARATAFTNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMR-D 225
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
DSG ++G+ FV F E A +A+ ++N ++ G+ + AQ +
Sbjct: 226 DSGHSRGFGFVNFEKHEEAQKAVMDMNGMQVSGRLLYVGRAQKR 269
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A+
Sbjct: 293 GVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKAV 350
Query: 179 EELNSCELKGKKIKCSAAQAK 199
E+N + K + + AQ K
Sbjct: 351 TEMNGRIIGTKPLYVALAQRK 371
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 127/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 72 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 130
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 131 VVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDRKVFVGRFKSRKEREAEMG 185
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN D+ RLKELF +GK V + G+ R +GFV + +
Sbjct: 186 AKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRG-FGFVSYEKHED 244
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ E++G+ + A+ + +++
Sbjct: 245 ANKAVEEMNGTELNGKTVFVGRAQKKMERQ 274
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 126/285 (44%), Gaps = 39/285 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T++ A +AIE++
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQDAADRAIEKM 159
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+G+D +++ K G
Sbjct: 160 NGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYG-KT 218
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ DP ++RGF F+ Y H A + ++M+ + K++ A
Sbjct: 219 LSVKVMTDP--TGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAE 276
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E + Q LY+KNL I ++L++ F+ G IT AK E
Sbjct: 277 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS-----AKVMLEEG 331
Query: 336 R---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
R +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 332 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 376
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 83/200 (41%), Gaps = 29/200 (14%)
Query: 75 ETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDD 134
ET+D D + + + KV K++ AE+ A + VY+ D D
Sbjct: 147 ETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQ 206
Query: 135 DLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194
L+ G+ V++M +G+++G+ FV++ E A++A+EE+N EL GK +
Sbjct: 207 RLKELFDKYGKTLSVKVMT-DPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVG 265
Query: 195 AAQAKH------------------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISI 230
AQ K L+I N+ ++ +RK + G SI
Sbjct: 266 RAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG----SI 321
Query: 231 ELVKDPQNANQNRGFAFIEY 250
K +++GF F+ +
Sbjct: 322 TSAKVMLEEGRSKGFGFVCF 341
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 12/142 (8%)
Query: 61 EVEEEVEEEVEEEEETEDVVDGIDAQKHYDGDEEMKV---AESDKDDEKKKHAELLALPP 117
E E+ + VEE TE ++ + + G + K+ AE + E+ K +
Sbjct: 240 EKHEDANKAVEEMNGTE-----LNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRY-- 292
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 293 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKA 350
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 351 VTEMNGRIVGSKPLYVALAQRK 372
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 98/417 (23%), Positives = 171/417 (41%), Gaps = 77/417 (18%)
Query: 95 MKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRH-FCKSIGEVTEVRIMK 153
+++ S +D K+++ E V++ + H A D+ H + G + ++
Sbjct: 131 IRIMWSQRDPAKRRNGE--------GNVFIKNL-HPAIDNKALHDTFSAFGRILSCKVAT 181
Query: 154 GKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH------------- 200
+ G++KG+ FV F + E A AIE +N L ++ A+
Sbjct: 182 -DNFGQSKGFGFVHFESPEAAQAAIENVNGMLLNNNEVYVGPHVARRDRQSKLEEVIKSF 240
Query: 201 -RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYS 259
+++ N+ E+++++ T G V S L KD + ++RGFAF+ Y H A S
Sbjct: 241 TNVYVKNIDLEASEEEVKELFTPFGT-VTSFYLEKDAEG--KSRGFAFVNYEEHEAAVKS 297
Query: 260 RQKMSNPKFKLDDNAPTVSWADPRN--------------AESSAASQVKALYVKNLPKDI 305
+ +++ +K V A ++ E SQ L+VKNL I
Sbjct: 298 IESLNDQDYK--GKKLYVGRAQKKSERLEELKKQYEAARIEKLTKSQGVNLFVKNLDDSI 355
Query: 306 TQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
++LKE F G I+ V + + G+ + +GFV F+ A +A+ ++ + G+ L
Sbjct: 356 DDEKLKEEFQSFGTISSVKVMIDESGKSKG-FGFVSFSSPEEASRAISEMNQHMLAGKPL 414
Query: 366 DCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYG 425
+LA+ + +++ Q A N A G L ++P P +YG
Sbjct: 415 YVALAQRKDVRRSQ--LEQQIQARNQLRLQQ------AAAAGGLPGQFIPT----PFIYG 462
Query: 426 RGAAPGGMAMLPMLLPDGRIGYVLQQPGVQQHNPPPQPRSGRG----GAGSSSSGGR 478
+ P LP G G + QP + PR G+G AG GGR
Sbjct: 463 QQ---------PQFLPPGARGPLPNQPFL-------IPRPGQGLPPQAAGGQWVGGR 503
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 131/269 (48%), Gaps = 18/269 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + ++ L IG+V+ +R+ + + + GYA+V + + +AI+
Sbjct: 60 ASLYVGELEPSINEALLFEIFSPIGQVSSIRVCRDALTKRSLGYAYVNYHNVKDGEKAID 119
Query: 180 ELNSCELKGKKIKCSAAQ---AKHR-----LFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
ELN +KG+ I+ +Q AK R +FI N+ + + G ++S +
Sbjct: 120 ELNYSVVKGQPIRIMWSQRDPAKRRNGEGNVFIKNLHPAIDNKALHDTFSAFG-RILSCK 178
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDN----APTVSWADPRNAES 287
+ D N Q++GF F+ + + A+ + + ++ L++N P V+ D ++
Sbjct: 179 VATD--NFGQSKGFGFVHFESPEAAQAAIENVNG--MLLNNNEVYVGPHVARRDRQSKLE 234
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+YVKN+ + +++ +KELF G +T + G+ R + FV++ E +
Sbjct: 235 EVIKSFTNVYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAEGKSRG-FAFVNYEEHEA 293
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQ 376
A+K++++ + G+ L A+ ++++
Sbjct: 294 AVKSIESLNDQDYKGKKLYVGRAQKKSER 322
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 129/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI+G+++ A+ + +++
Sbjct: 244 ANKAVEEMNGKEINGKIIFVGRAQKKVERQ 273
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 134/284 (47%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ ++++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQE 333
+ E + Q LY+KNL I ++L++ F+ G IT KV++ + G+
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML---EDGRS 332
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 333 KG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D++L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|119596296|gb|EAW75890.1| hCG2019100, isoform CRA_d [Homo sapiens]
Length = 639
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 119/258 (46%), Gaps = 19/258 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N LKG+ I+ +Q +FI N+ + + + G ++S +
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+ D + RGF F+ + H A+ + M+ L+D V R AE
Sbjct: 130 VACDEHGS---RGFGFVHFETHEAAQQAINTMNG--MLLNDRKVFVGHFKSRREREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +YVKNLP D+ + L++LF+ GK+ V + G R +GFV+F +
Sbjct: 185 ARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC-FGFVNFEKHEE 243
Query: 348 AMKALKNTEKYEIDGQVL 365
A KA+ + E+ G++L
Sbjct: 244 AQKAVVHMNGKEVSGRLL 261
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 114/262 (43%), Gaps = 33/262 (12%)
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH- 200
+ G + ++ D ++G+ FV F T E A QAI +N L +K+ +++
Sbjct: 121 TFGNILSCKV--ACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 201 -------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAF 247
+++ N+P + E ++ ++ G ++S+++++D N+ +R F F
Sbjct: 179 REAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFG-KMLSVKVMRD--NSGHSRCFGF 235
Query: 248 IEYYNHACAEYSRQKMSNPKF--KLDDNAPTVSWADPRNAESSAASQVKA---------- 295
+ + H A+ + M+ + +L + +N Q+K
Sbjct: 236 VNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVN 295
Query: 296 LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNT 355
LYVKNL I D+L++ F+ +G IT + G +GFV F+ A KA+
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKV--MTEGGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 356 EKYEIDGQVLDCSLAKPQADQK 377
+ + L +LA+ + ++K
Sbjct: 354 NGRIVGTKPLYVALAQRKEERK 375
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 17/168 (10%)
Query: 33 VDLDEDNDHEEEVEEEVEYEEVEEEEEVEVEEEVEEEVEEEEETEDVVDGIDAQKHYDGD 92
V + DN V +E+ EE ++ V + +E + ++ AQK +
Sbjct: 220 VKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH------MNGKEVSGRLLYAGRAQKRVERQ 273
Query: 93 EEMKV-AESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRI 151
E+K E K D +++ G +Y+ + DD LR G +T ++
Sbjct: 274 NELKRRFEQMKQDRLRRY--------QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV 325
Query: 152 MKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
M + G +KG+ FV F + E A++A+ E+N + K + + AQ K
Sbjct: 326 MT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 371
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 29/179 (16%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV +++ AEL A + +Y+ +P D + L+ G++ V++M+
Sbjct: 167 KVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMR-D 225
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKHR------ 201
+SG ++ + FV F E A +A+ +N E+ G+ + AQ K R
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQ 285
Query: 202 ----------LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L++ N+ + +D +RK + G I K ++GF F+ +
Sbjct: 286 DRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYG----VITSAKVMTEGGHSKGFGFVCF 340
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 119/252 (47%), Gaps = 18/252 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + +D L +G V VR+ + + + GY +V + + A++A++
Sbjct: 32 TSLYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAARALD 91
Query: 180 ELNSCELKGKKIKCSAA--------QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN L GK I+ + +FI N+ + + + G ++S +
Sbjct: 92 MLNFTPLNGKPIRIMYSFRDPSIRRSGTANIFIKNLDKAIDNKALYDTFSTFG-AILSCK 150
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D + Q++G+ F+++ N A+ + K++ L+D V + SA +
Sbjct: 151 IATDA--SGQSKGYGFVQFDNEESAKNATDKLNG--MLLNDKQVYVGPFVRKQERESATN 206
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
+ K +YVKNL + T + LK +F +G IT V+ G+ + +GFV+F A
Sbjct: 207 KTKFNNVYVKNLLESTTDEDLKNIFGEYGPITSAVVMQDGDGKSKC-FGFVNFENADDAA 265
Query: 350 KALK--NTEKYE 359
++++ N +K++
Sbjct: 266 RSVEALNGKKFD 277
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 97/401 (24%), Positives = 159/401 (39%), Gaps = 72/401 (17%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +++ + + L + G + +I SG++KGY FV F +E A A +
Sbjct: 120 ANIFIKNLDKAIDNKALYDTFSTFGAILSCKIATDA-SGQSKGYGFVQFDNEESAKNATD 178
Query: 180 ELNSCELKGKKIKCSAAQAK------------HRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+LN L K++ K + +++ N+ + ++D++ + GP +
Sbjct: 179 KLNGMLLNDKQVYVGPFVRKQERESATNKTKFNNVYVKNLLESTTDEDLKNIFGEYGP-I 237
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S +++D +++ F F+ + N A S + ++ KF DD V A +
Sbjct: 238 TSAVVMQD--GDGKSKCFGFVNFENADDAARSVEALNGKKF--DDKEWYVGKAQKKTERE 293
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
E+ Q LYVKNL I D+L+ELF+ G IT + G
Sbjct: 294 VELKGRFEQSLKEAVDKFQGLNLYVKNLDDSIADDKLRELFSEFGTITSCKVMRDPNGIS 353
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNP-T 392
R GFV F+ A +AL + + + L +LA+ + D++ +Q S + P
Sbjct: 354 RGS-GFVAFSTAEEASRALADMNGKMVASKPLYVALAQRKEDRRAR--LQAQFSQMRPAA 410
Query: 393 YPPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAMLPMLLPDGRIGYVLQQP 452
P +G M GA G G Q + YG+G P L+P QP
Sbjct: 411 MAPSVGPRMSMYPPGAPGLG-------QQLFYGQGP--------PALIPP--------QP 447
Query: 453 GV-QQHNPPPQPRSGRG------------GAGSSSSGGRRS 480
G QH P R G G + GGRRS
Sbjct: 448 GFGYQHQLVPGMRPGAAPMPNFFVPMVQPGQPNQRPGGRRS 488
>gi|68070939|ref|XP_677383.1| polyadenylate-binding protein [Plasmodium berghei strain ANKA]
gi|56497479|emb|CAH95361.1| polyadenylate-binding protein, putative [Plasmodium berghei]
Length = 833
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 129/265 (48%), Gaps = 26/265 (9%)
Query: 115 LPPHGS--EVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE 172
+PP S +Y+G + D ++ L ++G V +R+ + + ++ GYA+V +
Sbjct: 9 MPPSFSTASLYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLA 68
Query: 173 LASQAIEELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVT 221
A +A++ LN +KG+ + + HR +F+ N+ + + +
Sbjct: 69 DAERALDTLNYTNIKGQPARLMWS---HRDPSLRKSGTGNIFVKNLDKTIDNKALFDTFS 125
Query: 222 KIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWAD 281
G ++S ++ D ++N G F+ Y + A+ + +K++ +L V
Sbjct: 126 MFG-NILSCKVATDEFGKSKNYG--FVHYEDEESAKEAIEKVNG--MQLGSKNVYVGHFI 180
Query: 282 PRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
++ ++ ++ LYVKN P +T+ LK+LF+ +G+IT +++ K + ++ F++
Sbjct: 181 KKSERATNDTKFTNLYVKNFPDTVTEAHLKQLFSPYGEITSMIV---KSDNKNRKFCFIN 237
Query: 342 FAERSSAMKALKNTEKYEI--DGQV 364
+++ SA A++N +I DG++
Sbjct: 238 YSDADSARNAMENLNGKKITEDGKI 262
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G +Y+ + +D L+ + G +T ++MK D ++KG+ FV F T E A++A+
Sbjct: 406 GVNLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKD-DKDQSKGFGFVCFGTHEEANKAV 464
Query: 179 EELNSCELKGKKIKCSAAQAK-HRL 202
E++ + GK + A+ + HRL
Sbjct: 465 TEMHLKIINGKPLYVGLAEKREHRL 489
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 281 DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGF 339
D N ES LY+KNL + LKELF +G IT + K +++S+ +GF
Sbjct: 394 DTLNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEPYGTITSAKV--MKDDKDQSKGFGF 451
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLA 370
V F A KA+ I+G+ L LA
Sbjct: 452 VCFGTHEEANKAVTEMHLKIINGKPLYVGLA 482
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F A +A++
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN D+ +RLKELF +GK V + G+ R +GF+ + +
Sbjct: 185 AKAKEFTNVYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDPTGKSRG-FGFISYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA+++ E++G+ + A+ + +++
Sbjct: 244 ANKAVEDMNGTELNGKTVFVGRAQKKMERQ 273
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 125/285 (43%), Gaps = 39/285 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T++ A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQDAADRAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+G+D +++ K G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMNDERLKELFDKYG-KT 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ DP ++RGF FI Y H A + + M+ + K++ A
Sbjct: 218 LSVKVMTDP--TGKSRGFGFISYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKMERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E + Q LY+KNL I ++L++ F+ G IT AK E
Sbjct: 276 LKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS-----AKVMLEEG 330
Query: 336 R---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
R +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 85/200 (42%), Gaps = 29/200 (14%)
Query: 75 ETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDD 134
ET+D D + + + KV K++ AEL A + VY+ D +D+
Sbjct: 146 ETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMNDE 205
Query: 135 DLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194
L+ G+ V++M +G+++G+ F+++ E A++A+E++N EL GK +
Sbjct: 206 RLKELFDKYGKTLSVKVMT-DPTGKSRGFGFISYEKHEDANKAVEDMNGTELNGKTVFVG 264
Query: 195 AAQAKH------------------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISI 230
AQ K L+I N+ ++ +RK + G SI
Sbjct: 265 RAQKKMERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG----SI 320
Query: 231 ELVKDPQNANQNRGFAFIEY 250
K +++GF F+ +
Sbjct: 321 TSAKVMLEEGRSKGFGFVCF 340
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 122/268 (45%), Gaps = 16/268 (5%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G++ +R+ + + ++ GYA+V F A + ++
Sbjct: 12 TSLYVGDLHPDVTEALLYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAERVLD 71
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N LKGK I+ +Q L FI N+ ++ M + G ++S +
Sbjct: 72 TMNFDLLKGKPIRIMWSQRDPSLRKSGIGNVFIKNLDKSIDNKAMYDTFSAFG-NILSCK 130
Query: 232 LVKDPQNANQNRGFAF---IEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
+ D ++ GF IE N A + + ++ K + P +S
Sbjct: 131 VAIDDDGVSKGYGFVHFESIEAANKAIEKVNGMLLNGKKVYVGKFIPRAEREKEIGEKSK 190
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
+ V YVKN +++TQ++L +LF ++G IT V+ A P +GF+ F E SA
Sbjct: 191 KYTNV---YVKNFGRNLTQEQLYDLFKNYGTITSCVV-MANPDGTSKGFGFIAFEEPESA 246
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQ 376
KA+ YE++G L A+ ++++
Sbjct: 247 EKAVTEMNNYELNGTNLYVGRAQKKSER 274
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 112/270 (41%), Gaps = 35/270 (12%)
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS--------------AAQAKHR 201
D G +KGY FV F + E A++AIE++N L GKK+ ++
Sbjct: 135 DDGVSKGYGFVHFESIEAANKAIEKVNGMLLNGKKVYVGKFIPRAEREKEIGEKSKKYTN 194
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
+++ N RN ++ + G + S ++ +P ++GF FI + AE +
Sbjct: 195 VYVKNFGRNLTQEQLYDLFKNYGT-ITSCVVMANPDGT--SKGFGFIAFEEPESAEKAVT 251
Query: 262 KMSNPKFKLDDNAPTVSWADPRN--------------AESSAASQVKALYVKNLPKDITQ 307
+M+N ++L+ V A ++ E Q +Y+KNL
Sbjct: 252 EMNN--YELNGTNLYVGRAQKKSERIKELKKCYEQMKLERYNRIQGANVYIKNLDDTFDN 309
Query: 308 DRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDC 367
DRL++ F+ G IT + G +GFV F+ A KA+ + I + +
Sbjct: 310 DRLRKEFSQFGAITSAKV--MTEGGRSKGFGFVCFSTPEEASKAITEMDGRMIGSKPIYV 367
Query: 368 SLAKPQADQKTSGGSNSQKSALNPTYPPHL 397
+LA+ D++ + + + T P L
Sbjct: 368 ALAQRYEDRRAYLSAQCMQRIRHQTMSPPL 397
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 29/155 (18%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ VY+ + + + L K+ G +T +M D G +KG+ F+ F E A +A+
Sbjct: 193 TNVYVKNFGRNLTQEQLYDLFKNYGTITSCVVMANPD-GTSKGFGFIAFEEPESAEKAVT 251
Query: 180 ELNSCELKGKKIKCSAAQAKH------------------------RLFIGNVPRNWGEDD 215
E+N+ EL G + AQ K ++I N+ + D
Sbjct: 252 EMNNYELNGTNLYVGRAQKKSERIKELKKCYEQMKLERYNRIQGANVYIKNLDDTFDNDR 311
Query: 216 MRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
+RK ++ G +I K +++GF F+ +
Sbjct: 312 LRKEFSQFG----AITSAKVMTEGGRSKGFGFVCF 342
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 129/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI+G+++ A+ + +++
Sbjct: 244 ANKAVEEMNGKEINGKIIFVGRAQKKVERQ 273
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 134/284 (47%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ ++++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQE 333
+ E + Q LY+KNL I ++L++ F+ G IT KV++ + G+
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML---EDGRS 332
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 333 KG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D++L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|345561329|gb|EGX44424.1| hypothetical protein AOL_s00193g6 [Arthrobotrys oligospora ATCC
24927]
Length = 744
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 122/263 (46%), Gaps = 21/263 (7%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 48 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 107
Query: 177 AIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+EELN +KG+ + +Q L FI N+ + G ++
Sbjct: 108 ALEELNYTLIKGRPCRIMWSQRDPALRKTGHGNVFIKNLDIAIDNKALHDTFAAFG-NIL 166
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D +N N ++G+ F+ Y A + + ++ L++ V P+ S
Sbjct: 167 SCKVAQD-ENGN-SKGYGFVHYETAEAATNAIKHVNG--MLLNEKKVYVGHHIPKKERQS 222
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR--YGFVHF 342
++KA +YVKN+ +++ D + LF + G+IT + A+ G + +GFV+F
Sbjct: 223 KFDEMKANFTNVYVKNIDPEVSDDEFRTLFENFGQITSASL--ARDGDSGTSRGFGFVNF 280
Query: 343 AERSSAMKALKNTEKYEIDGQVL 365
+ +A A+ + E+ GQ L
Sbjct: 281 SSHEAAAAAVDALHETELKGQAL 303
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 84 DAQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCK 141
+A KH +G E KV +K++ ++ + + + VY+ I + SDD+ R +
Sbjct: 194 NAIKHVNGMLLNEKKVYVGHHIPKKERQSKFDEMKANFTNVYVKNIDPEVSDDEFRTLFE 253
Query: 142 SIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
+ G++T + + DSG ++G+ FV F + E A+ A++ L+ ELKG+ + AQ KH
Sbjct: 254 NFGQITSASLARDGDSGTSRGFGFVNFSSHEAAAAAVDALHETELKGQALFVGRAQKKH 312
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 129/306 (42%), Gaps = 58/306 (18%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
HG+ V++ + + L + G + ++ + ++G +KGY FV + T E A+ A
Sbjct: 138 HGN-VFIKNLDIAIDNKALHDTFAAFGNILSCKVAQ-DENGNSKGYGFVHYETAEAATNA 195
Query: 178 IEELNSCELKGKKIKC------SAAQAKH--------RLFIGNVPRNWGEDDMRKAVTKI 223
I+ +N L KK+ Q+K +++ N+ +D+ R
Sbjct: 196 IKHVNGMLLNEKKVYVGHHIPKKERQSKFDEMKANFTNVYVKNIDPEVSDDEFRTLFENF 255
Query: 224 GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 283
G + S L +D ++ +RGF F+ + +H A + + + K A V A +
Sbjct: 256 G-QITSASLARD-GDSGTSRGFGFVNFSSHEAAAAAVDALHETELK--GQALFVGRAQKK 311
Query: 284 N--------------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI---- 325
+ E ++ Q LYVKNL +I +RL++ F+ +G IT +
Sbjct: 312 HEREEELRKQYEAARIEKASKYQGVNLYVKNLDDEIDDERLRQEFSPYGTITSAKVMRDS 371
Query: 326 ---PPAKPGQE----------------RSR-YGFVHFAERSSAMKALKNTEKYEIDGQVL 365
P K G+E +S+ +GFV F+ A KA+ + ++G+ L
Sbjct: 372 LDSPKEKDGEESKVGEPEEKATDKKQGKSKGFGFVCFSNPDEASKAVAEMNQRMVNGKPL 431
Query: 366 DCSLAK 371
+LA+
Sbjct: 432 YVALAQ 437
Score = 41.6 bits (96), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 33/140 (23%)
Query: 85 AQKHYDGDEEM-KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
AQK ++ +EE+ K E+ + ++ K+ G +Y+ + + D+ LR
Sbjct: 308 AQKKHEREEELRKQYEAARIEKASKY--------QGVNLYVKNLDDEIDDERLRQEFSPY 359
Query: 144 GEVTEVRIMKG------------------------KDSGEAKGYAFVTFRTKELASQAIE 179
G +T ++M+ K G++KG+ FV F + AS+A+
Sbjct: 360 GTITSAKVMRDSLDSPKEKDGEESKVGEPEEKATDKKQGKSKGFGFVCFSNPDEASKAVA 419
Query: 180 ELNSCELKGKKIKCSAAQAK 199
E+N + GK + + AQ K
Sbjct: 420 EMNQRMVNGKPLYVALAQRK 439
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI G+V+ A+ + +++
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 128/285 (44%), Gaps = 39/285 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ +++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--TGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E + Q LY+KNL I ++L++ F+ G IT AK E
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS-----AKVMLEDG 330
Query: 336 R---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
R +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D+ L+ G+ V++M+ +G++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR-DPTGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI G+V+ A+ + +++
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 133/284 (46%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ +++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQE 333
+ E + Q LY+KNL I ++L++ F+ G IT KV++ + G+
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML---EDGRS 332
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 333 KG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D+ L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 122/258 (47%), Gaps = 19/258 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F A +A++
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQDAADRAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN D+ +RLKELF +GK V + G+ R +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVL 365
A KA+++ E++G+ +
Sbjct: 244 ANKAVEDMNGTELNGKTV 261
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 126/287 (43%), Gaps = 43/287 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T++ A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQDAADRAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+G+D +++ K G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYG-KT 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
+S++++ DP ++RGF F+ Y H A + + M+ +L+ V A +N
Sbjct: 218 LSVKVMMDP--TGKSRGFGFVSYEKHEDANKAVEDMNGT--ELNGKTVFVGRAQKKNERQ 273
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
E + Q LY+KNL I ++L++ F+ G IT AK E
Sbjct: 274 AELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS-----AKVMLE 328
Query: 334 RSR---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
R +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 329 EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 29/200 (14%)
Query: 75 ETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDD 134
ET+D D + + + KV K++ AEL A + VY+ D D+
Sbjct: 146 ETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDE 205
Query: 135 DLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCS 194
L+ G+ V++M +G+++G+ FV++ E A++A+E++N EL GK +
Sbjct: 206 RLKELFDKYGKTLSVKVMM-DPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVG 264
Query: 195 AAQAKH------------------------RLFIGNVPRNWGEDDMRKAVTKIGPGVISI 230
AQ K+ L+I N+ ++ +RK + G SI
Sbjct: 265 RAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFG----SI 320
Query: 231 ELVKDPQNANQNRGFAFIEY 250
K +++GF F+ +
Sbjct: 321 TSAKVMLEEGRSKGFGFVCF 340
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQ 261
L++G++ + E + + + GP V+SI + +D ++ G+A++ + A AE +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGP-VLSIRVCRD-MITRRSLGYAYVNFSQPADAERALD 70
Query: 262 KMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHG 318
M+ F + P + W+ DP S S V +++KNL K I L + F+ G
Sbjct: 71 TMN---FDVVKGKPIRIMWSQRDP----SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 319 KITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 366
I + + G + Y FVHF + +A +A++ +++G +L+
Sbjct: 124 NILSCKVVCDENGSKG--YAFVHFETQDAADRAIE-----KMNGMLLN 164
>gi|339248325|ref|XP_003375796.1| RNA-binding protein squid [Trichinella spiralis]
gi|316970795|gb|EFV54670.1| RNA-binding protein squid [Trichinella spiralis]
Length = 329
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 106/193 (54%), Gaps = 22/193 (11%)
Query: 62 VEEEV--EEEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHG 119
V+EEV E+++ E+ + +V+ G D Q DG + +K++E+K
Sbjct: 13 VQEEVSNEQQMSEQCKQANVLQGEDTQPSNDG-VSAPAKKREKNEERK------------ 59
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+++GGI D +++DL + G+V V++ +G ++G+AFV F T E +A+
Sbjct: 60 --IFVGGISWDTNENDLTNHFNQFGDVVHVQVKYDHYTGRSRGFAFVEFATAEACKKALA 117
Query: 180 ELNSCELKGKKIKCSAAQAKH--RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQ 237
+ ++ ELKGKK + A+++ +LF+G +P ++ E+ +RK + + G V IE D
Sbjct: 118 KKDA-ELKGKKCEVKPAKSRENKKLFVGGLPSDYTEELLRKHMEQFGR-VEEIEWPFDKV 175
Query: 238 NANQNRGFAFIEY 250
N N+ + FAFI +
Sbjct: 176 N-NKRKNFAFIVF 187
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 17/212 (8%)
Query: 201 RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSR 260
++F+G + + E+D+ + G V+ ++ VK ++RGFAF+E+ A AE +
Sbjct: 59 KIFVGGISWDTNENDLTNHFNQFGD-VVHVQ-VKYDHYTGRSRGFAFVEF---ATAEACK 113
Query: 261 QKMSNPKFKLDDNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKI 320
+ ++ +L V A R + K L+V LP D T++ L++ G++
Sbjct: 114 KALAKKDAELKGKKCEVKPAKSR--------ENKKLFVGGLPSDYTEELLRKHMEQFGRV 165
Query: 321 TKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQA--DQKT 378
++ P K +R + F+ F E A K + D +A PQ QKT
Sbjct: 166 EEIEWPFDKVNNKRKNFAFIVF-EDDDGAAAAAALPKQRFGDRTCDVKIAVPQYMRPQKT 224
Query: 379 SG-GSNSQKSALNPTYPPHLGYGMVGGAYGAL 409
+G G + Q Y + GYG G YG
Sbjct: 225 AGPGMSQQWPGHYHDYSGYSGYGSNAGHYGYF 256
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 129/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI+G+++ A+ + +++
Sbjct: 244 ANKAVEEMNGKEINGKIIFVGRAQKKVERQ 273
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 130/285 (45%), Gaps = 39/285 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ ++++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFG-KT 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E + Q LY+KNL I ++L++ F+ G IT AK E
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS-----AKVMLEDG 330
Query: 336 R---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
R +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D++L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 115/258 (44%), Gaps = 18/258 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + ++ L IG V +R+ + + + GYA+V + T +A+E
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 120
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
ELN +KG+ + +Q +FI N+ + G ++S +
Sbjct: 121 ELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFG-NILSCK 179
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ +D ++G+ F+ Y A + + ++ L++ V P+ S
Sbjct: 180 VAQDEH--GNSKGYGFVHYETDEAASQAIKHVNG--MLLNEKKVYVGHHIPKKDRQSKFE 235
Query: 292 QVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
++KA +YVKN+ ++T D +ELF G++T + + G+ R +GFV+F +
Sbjct: 236 EMKANFTNVYVKNINHEVTDDEFRELFEKFGEVTSSSLARDQEGKTRG-FGFVNFTTHEA 294
Query: 348 AMKALKNTEKYEIDGQVL 365
A KA+ + + GQ L
Sbjct: 295 AAKAVDDLNGKDFRGQDL 312
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 36/226 (15%)
Query: 130 DASDDD--LRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
DA+ D+ L + G + ++ + + G +KGY FV + T E ASQAI+ +N L
Sbjct: 157 DAAIDNKALHDTFAAFGNILSCKVAQ-DEHGNSKGYGFVHYETDEAASQAIKHVNGMLLN 215
Query: 188 GKKIKCSA------AQAKH--------RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
KK+ Q+K +++ N+ +D+ R+ K G V S L
Sbjct: 216 EKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINHEVTDDEFRELFEKFGE-VTSSSLA 274
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
+D + + RGF F+ + H A + ++ F+ D V A ++
Sbjct: 275 RDQEG--KTRGFGFVNFTTHEAAAKAVDDLNGKDFRGQD--LYVGRAQKKHEREEELRRS 330
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E + Q LY+KNL D+ ++L+ +F+ +G IT +
Sbjct: 331 YEAARLEKANKYQGVNLYIKNLGDDVDDEKLRAMFSEYGPITSAKV 376
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI G+V+ A+ + +++
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 133/284 (46%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ +++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQE 333
+ E + Q LY+KNL I ++L++ F+ G IT KV++ + G+
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML---EDGRS 332
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 333 KG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D+ L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI G+V+ A+ + +++
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 134/284 (47%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ ++++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQE 333
+ E + Q LY+KNL I ++L++ F+ G IT KV++ + G+
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML---EDGRS 332
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 333 KG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D++L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 124/271 (45%), Gaps = 19/271 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA++ F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KG+ I+ +Q +FI N+ + + + G ++S +
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAE----S 287
+V D + RGF F+ + H A+ + M+ L+D V R
Sbjct: 130 VVCDDHGS---RGFGFVHFETHEAAQQAITTMNG--MLLNDRKVFVGHFKSRREREVELG 184
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
+ A + +YVKNL D+ + L++LF+ GK+ V + G R +GFV+F +
Sbjct: 185 ARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRG-FGFVNFQKHEE 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A KA+ + E+ G++L A+ + ++++
Sbjct: 244 AQKAVMDMNGKEVSGRLLYVGRAQKRVERQS 274
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 117/272 (43%), Gaps = 42/272 (15%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + +++ D ++G+ FV F T E A QAI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVC--DDHGSRGFGFVHFETHEAAQQAITTM 158
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L +K+ +++ +++ N+ + E ++ ++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFG-KM 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S+++++D ++ +RGF F+ + H A+ + M+ + + V A R
Sbjct: 218 LSVKVMRD--DSGHSRGFGFVNFQKHEEAQKAVMDMNGKE--VSGRLLYVGRAQKRVERQ 273
Query: 288 SAAS----QVKA----------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
S Q+K LYVKNL I ++L++ F+ +G IT + G
Sbjct: 274 SELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKV--MTEGGH 331
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
+GFV F+ A KA+ E++G++L
Sbjct: 332 SKGFGFVCFSSPEEATKAVT-----EMNGRIL 358
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 96 KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGK 155
KV +++ EL A + +Y+ + D + L+ G++ V++M+
Sbjct: 167 KVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMR-D 225
Query: 156 DSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
DSG ++G+ FV F+ E A +A+ ++N E+ G+ + AQ +
Sbjct: 226 DSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKR 269
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 85 AQKHYDGDEEMKV-AESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
AQK + E+K E K D ++ G +Y+ + D+ LR
Sbjct: 266 AQKRVERQSELKRRFEQLKQDRLTRY--------QGVNLYVKNLDDSIDDEKLRKEFSPY 317
Query: 144 GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
G +T ++M + G +KG+ FV F + E A++A+ E+N L K + + AQ K
Sbjct: 318 GVITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQRK 371
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI G+V+ A+ + +++
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 133/284 (46%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ +++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQE 333
+ E + Q LY+KNL I ++L++ F+ G IT KV++ + G+
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML---EDGRS 332
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 333 KG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D+ L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 129/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI+G+++ A+ + +++
Sbjct: 244 ANKAVEEMNGKEINGKIIFVGRAQKKVERQ 273
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 130/285 (45%), Gaps = 39/285 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ ++++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E + Q LY+KNL I ++L++ F+ G IT AK E
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS-----AKVMLEDG 330
Query: 336 R---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
R +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D++L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI G+V+ A+ + +++
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 133/284 (46%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ +++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQE 333
+ E + Q LY+KNL I ++L++ F+ G IT KV++ + G+
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML---EDGRS 332
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 333 KG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D+ L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI G+V+ A+ + +++
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 134/284 (47%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ ++++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQE 333
+ E + Q LY+KNL I ++L++ F+ G IT KV++ + G+
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML---EDGRS 332
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 333 KG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D++L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|340939192|gb|EGS19814.1| hypothetical protein CTHT_0042990 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 777
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 120/262 (45%), Gaps = 18/262 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + +Y+G + ++ L IG V +R+ + + + GYA+V + +
Sbjct: 64 PQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNSVADGE 123
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+EELN +KGK + +Q +FI N+ + G +
Sbjct: 124 KALEELNYTLIKGKPCRIMWSQRDPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFG-NI 182
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ D +N N ++G+ F+ Y A + + ++ L++ V + P+
Sbjct: 183 LSCKVATD-ENGN-SKGYGFVHYETDEAAAQAIKHVNG--MLLNEKKVYVGYHIPKKDRQ 238
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S ++KA +Y+KN+ ++T++ +E F+ G+IT + G+ R +GFV+++
Sbjct: 239 SKFEEMKANYTNVYIKNINLEVTEEEFREFFSKWGEITSSTLARDAEGKPRG-FGFVNYS 297
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
+SA K ++ E GQ L
Sbjct: 298 THASAAKCVEEMNGKEWRGQEL 319
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 97/426 (22%), Positives = 167/426 (39%), Gaps = 99/426 (23%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
HG+ +++ + + L + G + ++ ++G +KGY FV + T E A+QA
Sbjct: 155 HGN-IFIKNLDAAIDNKALHDTFAAFGNILSCKVAT-DENGNSKGYGFVHYETDEAAAQA 212
Query: 178 IEELNSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKI 223
I+ +N L KK+ K +A + ++I N+ E++ R+ +K
Sbjct: 213 IKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANYTNVYIKNINLEVTEEEFREFFSKW 272
Query: 224 GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR 283
G + S L +D + + RGF F+ Y HA A ++M+ +++ + V A +
Sbjct: 273 GE-ITSSTLARDAEG--KPRGFGFVNYSTHASAAKCVEEMNGKEWRGQEL--YVGRAQKK 327
Query: 284 N--------------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI---- 325
+ E Q LY+KNL ++ ++L+ +FA G IT +
Sbjct: 328 HEREEELRKSYEAARLEKQNKYQGVNLYIKNLSDEVDDEKLRAMFAEFGPITSAKVMRDT 387
Query: 326 PPAKPGQERSR-------------------------------------YGFVHFAERSSA 348
PP E+++ +GFV FA A
Sbjct: 388 PPEPAKDEKNKENNKESEKEGEKKEGEGEGDKKPEVKKPERKLGKSKGFGFVCFANPDDA 447
Query: 349 MKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYGMVGGAYGA 408
KA+ + +DG+ L +LA+ + +K+ ++ Q + A
Sbjct: 448 TKAVAEMNQRMVDGKPLYVALAQRKEVRKSQLEASIQAR------------NQLRMQQQA 495
Query: 409 LGAGYVPAGFAQPMVYGRGAAPGGMAMLP------MLLPDGRIGYVLQQPGVQQHNPPPQ 462
AG +P + QP VY G PG LP M P G +G Q G PP
Sbjct: 496 AQAG-LPQ-YMQPPVYYPGQQPG---FLPPAAGRGMPFPQGALGMPPVQGGRPGQFPPYP 550
Query: 463 PRSGRG 468
++GRG
Sbjct: 551 QQAGRG 556
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 73/158 (46%), Gaps = 29/158 (18%)
Query: 102 KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAK 161
K D + K E+ A + + VY+ I + ++++ R F GE+T + + + G+ +
Sbjct: 234 KKDRQSKFEEMKA---NYTNVYIKNINLEVTEEEFREFFSKWGEITSSTLARDAE-GKPR 289
Query: 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------------- 200
G+ FV + T A++ +EE+N E +G+++ AQ KH
Sbjct: 290 GFGFVNYSTHASAAKCVEEMNGKEWRGQELYVGRAQKKHEREEELRKSYEAARLEKQNKY 349
Query: 201 ---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L+I N+ ++ +R + GP + S ++++D
Sbjct: 350 QGVNLYIKNLSDEVDDEKLRAMFAEFGP-ITSAKVMRD 386
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 84/173 (48%), Gaps = 18/173 (10%)
Query: 197 QAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACA 256
QA L++G + + E + + ++IG V SI + +D ++ G+A++ Y + A
Sbjct: 65 QASASLYVGELDPSVTEAMLFELFSQIG-SVASIRVCRD-AVTRRSLGYAYVNYNSVADG 122
Query: 257 EYSRQKMSNPKFKLDDNAPT-VSWA--DPRNAESSAASQVKALYVKNLPKDITQDRLKEL 313
E + ++++ + L P + W+ DP ++ + +++KNL I L +
Sbjct: 123 EKALEELN---YTLIKGKPCRIMWSQRDPALRKTGHGN----IFIKNLDAAIDNKALHDT 175
Query: 314 FAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLD 366
FA G I + + G + YGFVH+ +A +A+K+ ++G +L+
Sbjct: 176 FAAFGNILSCKVATDENGNSKG-YGFVHYETDEAAAQAIKH-----VNGMLLN 222
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 123/269 (45%), Gaps = 23/269 (8%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
S +Y+G + + +D L I V VR+ + + + + GY +V + A+ A+E
Sbjct: 25 SSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAME 84
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
LN L GK I+ + HR LFI N+ + + + + G V+
Sbjct: 85 NLNYVPLNGKPIRIMFS---HRDPLIRKTGFANLFIKNLETSIDNKALHETFSVFG-NVL 140
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ D ++G F+++ N A+ + +K+ ++D V + +
Sbjct: 141 SCKVAMDSN--GHSKGHGFVQFDNDQSAKNAIEKLDGR--LMNDKKVYVGYF--VRCQER 194
Query: 289 AASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSA 348
++ + +YVKNL + T + LK+LF G IT V I + G + R+GFV+F SA
Sbjct: 195 SSPKFTNVYVKNLSESYTNEDLKQLFNTFGVITSVKIMKDENGNSK-RFGFVNFQSSDSA 253
Query: 349 MKALKNTEKYEI-DGQVLDCSLAKPQADQ 376
A++ DG+VL A+ ++++
Sbjct: 254 ATAVEKLNGSTTNDGKVLFVGRAQKKSER 282
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/363 (20%), Positives = 146/363 (40%), Gaps = 60/363 (16%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +++ + + L G V ++ + G +KG+ FV F + A AIE
Sbjct: 113 ANLFIKNLETSIDNKALHETFSVFGNVLSCKVAMDSN-GHSKGHGFVQFDNDQSAKNAIE 171
Query: 180 ELNSCELKGKKI------KCS--AAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+L+ + KK+ +C ++ +++ N+ ++ +D+++ G + S++
Sbjct: 172 KLDGRLMNDKKVYVGYFVRCQERSSPKFTNVYVKNLSESYTNEDLKQLFNTFGV-ITSVK 230
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
++KD +N N R F F+ + + A + +K++ N V + +S +
Sbjct: 231 IMKD-ENGNSKR-FGFVNFQSSDSAATAVEKLNGS----TTNDGKVLFVGRAQKKSEREA 284
Query: 292 QVKA-----------------LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQER 334
++KA LY+KN+ K + +++LKELF+ G IT + G+ +
Sbjct: 285 ELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDARGRSK 344
Query: 335 SRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK-----------TSGGSN 383
GFV F A KA+ I + + S+A+ + ++K SGG+
Sbjct: 345 G-VGFVAFTTPEEASKAIDEMNGKIIGQKPVYVSVAQRKEERKAQLQAHFPAIQVSGGNA 403
Query: 384 SQKSALNPTYPPHL---------------GYGMVGGAYGALGAGYVPAGFAQPMVYGRGA 428
S++ P GYG +G G+V + P R
Sbjct: 404 GYHSSVQRLAPQQFYYEQGTFDLMAPQPNGYGFRPKFMSDVGPGFVTPNYLLPYHLQRQG 463
Query: 429 APG 431
PG
Sbjct: 464 HPG 466
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 74/155 (47%), Gaps = 27/155 (17%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
P + VY+ + +++DL+ + G +T V+IMK ++G +K + FV F++ + A+
Sbjct: 197 PKFTNVYVKNLSESYTNEDLKQLFNTFGVITSVKIMK-DENGNSKRFGFVNFQSSDSAAT 255
Query: 177 AIEELN-SCELKGKKIKCSAAQAKH------------------------RLFIGNVPRNW 211
A+E+LN S GK + AQ K L++ N+ ++
Sbjct: 256 AVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSL 315
Query: 212 GEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFA 246
E+ +++ ++ G + S +++ D + ++ GF
Sbjct: 316 NEEKLKELFSEFGT-ITSCKVMSDARGRSKGVGFV 349
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G+ +YL I +++ L+ G +T ++M G +KG FV F T E AS+A
Sbjct: 302 QGANLYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDA-RGRSKGVGFVAFTTPEEASKA 360
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
I+E+N + K + S AQ K
Sbjct: 361 IDEMNGKIIGQKPVYVSVAQRK 382
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 136/270 (50%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + +A++D L + G V +RI + + + GYA+V F A +A++
Sbjct: 10 ASLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQLADAQRALD 69
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KG+ I+ +Q L F+ N+ R+ + + + G ++S +
Sbjct: 70 TMNFDVIKGRPIRLMWSQRDACLRRSGIGNVFVKNLDRSVDNKTLYEHFSGFGK-ILSSK 128
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AE-S 287
++ D Q + +G+AF+ + + + A + ++M+ ++D V+ PR AE
Sbjct: 129 VMSDDQGS---KGYAFVHFQSQSAANCAIEQMNGK--VINDRPVFVAPFKPRKDREAELR 183
Query: 288 SAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
S AS+ +Y+KN D+ +RL+ +F+ +GK V + G+ + +GFV F +
Sbjct: 184 SRASEFTNVYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDSSGKSKG-FGFVSFESHEA 242
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A +A++ +++GQ++ A+ + +++
Sbjct: 243 AKRAVEEMNGKDMNGQLVFVGRAQKKVERQ 272
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 124/270 (45%), Gaps = 38/270 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L G++ ++M D +KGYAFV F+++ A+ AIE++
Sbjct: 100 VFVKNLDRSVDNKTLYEHFSGFGKILSSKVMS--DDQGSKGYAFVHFQSQSAANCAIEQM 157
Query: 182 NS----------CELKGKKIKCSAAQAKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N K +K + + +++ F +N+G+D ++ ++ G
Sbjct: 158 NGKVINDRPVFVAPFKPRKDREAELRSRASEFTNVYIKNFGDDMDDERLQGVFSRYGK-T 216
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ D ++ +++GF F+ + +H A+ + ++M+ K++ A
Sbjct: 217 LSVKVMTD--SSGKSKGFGFVSFESHEAAKRAVEEMNGKDMNGQLVFVGRAQKKVERQAE 274
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E Q LYVKNL + ++L++ F+ G IT+V + + G R
Sbjct: 275 LKHMFEQMKKERIRRCQGVKLYVKNLDDTVDDEQLRKEFSSFGSITRVKVMK-EEGYSRG 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVL 365
+G + F+ A KAL E++G+VL
Sbjct: 334 -FGLICFSSPEEAAKALT-----EMNGRVL 357
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K + AEL + + VY+ D D+ L+ G+ V++M SG++KG+ F
Sbjct: 176 KDREAELRSRASEFTNVYIKNFGDDMDDERLQGVFSRYGKTLSVKVMT-DSSGKSKGFGF 234
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQ--------AKH----------------R 201
V+F + E A +A+EE+N ++ G+ + AQ KH +
Sbjct: 235 VSFESHEAAKRAVEEMNGKDMNGQLVFVGRAQKKVERQAELKHMFEQMKKERIRRCQGVK 294
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L++ N+ ++ +RK + G SI VK + +RGF I +
Sbjct: 295 LYVKNLDDTVDDEQLRKEFSSFG----SITRVKVMKEEGYSRGFGLICF 339
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G ++Y+ + D+ LR S G +T V++MK + G ++G+ + F + E A++A
Sbjct: 291 QGVKLYVKNLDDTVDDEQLRKEFSSFGSITRVKVMK--EEGYSRGFGLICFSSPEEAAKA 348
Query: 178 IEELNSCELKGKKIKCSAAQ 197
+ E+N L K + + AQ
Sbjct: 349 LTEMNGRVLGSKALSIALAQ 368
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI G+V+ A+ + +++
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 133/284 (46%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ +++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQE 333
+ E + Q LY+KNL I ++L++ F+ G IT KV++ + G+
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML---EDGRS 332
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 333 KG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D+ L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI G+V+ A+ + +++
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 133/284 (46%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ +++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQE 333
+ E + Q LY+KNL I ++L++ F+ G IT KV++ + G+
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML---EDGRS 332
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 333 KG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D+ L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI G+V+ A+ + +++
Sbjct: 244 ANKAVEEMNGKEITGKVIFVGRAQKKVERQ 273
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 134/284 (47%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ ++++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQE 333
+ E + Q LY+KNL I ++L++ F+ G IT KV++ + G+
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML---EDGRS 332
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 333 KG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D++L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 68 EEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGI 127
EE+ +E T V+ AQK + E+K E+ + G +Y+ +
Sbjct: 249 EEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ-------GVNLYIKNL 301
Query: 128 PHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
D+ LR G +T ++M + G +KG+ FV F + E A++A+ E+N +
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 188 GKKIKCSAAQAK 199
K + + AQ K
Sbjct: 360 SKPLYVALAQRK 371
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 116/261 (44%), Gaps = 18/261 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
PH + +Y+G + ++ L SIG+V +R+ + + + GYA+V + +
Sbjct: 39 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGER 98
Query: 177 AIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGVI 228
A++ELN +KGK + +Q + +FI N+ + G ++
Sbjct: 99 ALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG-NIL 157
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ +D ++G+ F+ Y A + + ++ L+D V + S
Sbjct: 158 SCKVAQD--EFGVSKGYGFVHYETAEAANNAIKHVNG--MLLNDKKVFVGHHISKKDRQS 213
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +Y+KN+ ++ + ++LF G+IT + G+ R +GFV+F+
Sbjct: 214 KFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRG-FGFVNFST 272
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
SA A++ E+ Q L
Sbjct: 273 HESAQAAVEEMNDKEVRSQKL 293
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 101/232 (43%), Gaps = 34/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A+ AI+ +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQ-DEFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 182 NSCELKGKKIKCSAAQAKH--------------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ +K ++I N+ +++ RK K G +
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGE-I 249
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D + ++RGF F+ + H A+ + ++M++ + + V A ++
Sbjct: 250 TSATLSRDSEG--KSRGFGFVNFSTHESAQAAVEEMNDKEVR--SQKLYVGRAQKKHERE 305
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL D+ D+L+ELF +G IT +
Sbjct: 306 EELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKV 357
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI G+V+ A+ + +++
Sbjct: 244 ANKAVEEMNGKEITGKVIFVGRAQKKVERQ 273
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 134/284 (47%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ ++++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQE 333
+ E + Q LY+KNL I ++L++ F+ G IT KV++ + G+
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML---EDGRS 332
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 333 KG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D++L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 68 EEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGI 127
EE+ +E T V+ AQK + E+K E+ + G +Y+ +
Sbjct: 249 EEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ-------GVNLYIKNL 301
Query: 128 PHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
D+ LR G +T ++M + G +KG+ FV F + E A++A+ E+N +
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 188 GKKIKCSAAQAK 199
K + + AQ K
Sbjct: 360 SKPLYVALAQRK 371
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI G+V+ A+ + +++
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 133/284 (46%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ +++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQE 333
+ E + Q LY+KNL I ++L++ F+ G IT KV++ + G+
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML---EDGRS 332
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 333 KG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D+ L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI G+V+ A+ + +++
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 133/284 (46%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ +++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQE 333
+ E + Q LY+KNL I ++L++ F+ G IT KV++ + G+
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML---EDGRS 332
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 333 KG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D+ L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI G+V+ A+ + +++
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 129/285 (45%), Gaps = 39/285 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ +++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E + Q LY+KNL I ++L++ F+ G IT AK E
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS-----AKVMLEDG 330
Query: 336 R---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
R +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D+ L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI G+V+ A+ + +++
Sbjct: 244 ANKAVEEMNGKEITGKVIFVGRAQKKVERQ 273
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 134/284 (47%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ ++++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQE 333
+ E + Q LY+KNL I ++L++ F+ G IT KV++ + G+
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML---EDGRS 332
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 333 KG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D++L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 68 EEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGI 127
EE+ +E T V+ AQK + E+K E+ + G +Y+ +
Sbjct: 249 EEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ-------GVNLYIKNL 301
Query: 128 PHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
D+ LR G +T ++M + G +KG+ FV F + E A++A+ E+N +
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 188 GKKIKCSAAQAK 199
K + + AQ K
Sbjct: 360 SKPLYVALAQRK 371
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 116/263 (44%), Gaps = 19/263 (7%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + +Y+G + ++ L IG V +R+ + S + GYA+V + T
Sbjct: 57 PQASASLYVGELDTSVTEAMLFELFSQIGSVASIRVCRDAISRRSLGYAYVNYNTTADGE 116
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+EELN +KG+ + +Q + +FI N+ + G +
Sbjct: 117 KALEELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 175
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ +D A ++G+ F+ Y A + + ++ L++ V P+
Sbjct: 176 LSCKVAQDESGA--SKGYGFVHYETDEAAAQAIKHVNG--MLLNEKKVFVGHHIPKKDRQ 231
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIP-PAKPGQERSRYGFVHF 342
S ++KA +YVKN+P + T++ +ELF G +T + A+ G+ R +GFV+F
Sbjct: 232 SKFEEMKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKSRG-FGFVNF 290
Query: 343 AERSSAMKALKNTEKYEIDGQVL 365
A A+ + GQ L
Sbjct: 291 INHEHAATAVDELNGKDFKGQDL 313
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 103/232 (44%), Gaps = 33/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + +SG +KGY FV + T E A+QAI+ +
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DESGASKGYGFVHYETDEAAAQAIKHV 209
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ K +A +++ N+P E++ R+ K G V
Sbjct: 210 NGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEATEEEFRELFEKFG-DV 268
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D + ++RGF F+ + NH A + +++ FK D V A ++
Sbjct: 269 TSASLARDAETG-KSRGFGFVNFINHEHAATAVDELNGKDFKGQD--LYVGRAQKKHERE 325
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL DI ++L+ELF G IT +
Sbjct: 326 EELRRSYEAARIEKASKYQGVNLYVKNLDDDIDDEKLRELFQSFGSITSAKV 377
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
Query: 85 AQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKS 142
A KH +G E KV +K + ++ + + + +Y+ IP +A++++ R +
Sbjct: 205 AIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEATEEEFRELFEK 264
Query: 143 IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G+VT + + ++G+++G+ FV F E A+ A++ELN + KG+ + AQ KH
Sbjct: 265 FGDVTSASLARDAETGKSRGFGFVNFINHEHAATAVDELNGKDFKGQDLYVGRAQKKH 322
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI G+V+ A+ + +++
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 133/284 (46%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ +++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQE 333
+ E + Q LY+KNL I ++L++ F+ G IT KV++ + G+
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML---EDGRS 332
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 333 KG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D+ L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|167527097|ref|XP_001747881.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773630|gb|EDQ87268.1| predicted protein [Monosiga brevicollis MX1]
Length = 553
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 125/250 (50%), Gaps = 23/250 (9%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIG-EVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
PH + +Y+G + D + +L +F S G V VR+ + + + GY +V F T E A+
Sbjct: 26 PHSASLYVGDLSKDVIEAELYNFFNSFGATVQSVRVCRDMVTQTSLGYGYVNFATPEDAA 85
Query: 176 QAIEELNSCELKGKKIKCSAAQ---AKHRLFIGNV-PRNWGEDDMRKAV---TKIGPGVI 228
+ E N ELKG+ ++ ++ K R +GN+ +N + KA+ ++ V+
Sbjct: 86 KVYEAANFEELKGQPVRIMFSERDPTKRRSGVGNIFIKNLSAEVDNKALYDTFRVFGTVL 145
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMS--NPKFKLDDNAPTVSWADPRNAE 286
S ++ D Q N +RG AF++Y + AE ++Q ++ N K K+ D V PR
Sbjct: 146 SCRVLYD-QEGN-SRGIAFVQYED---AEVAKQVIAQVNDK-KILDKVVKVEAYKPRRQR 199
Query: 287 SSAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHF 342
A + + ++ KN+ DI+ + + + F + G+I V+ K + RYGFV +
Sbjct: 200 MLEAEETQKNFTNVFFKNVAADISDEDIMKEFENFGEIESKVL---KSHDQFGRYGFVAY 256
Query: 343 AERSSAMKAL 352
+ + A KA+
Sbjct: 257 KDTADAQKAV 266
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 124/276 (44%), Gaps = 36/276 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + + L + G V R++ ++ G ++G AFV + E+A Q I ++
Sbjct: 120 IFIKNLSAEVDNKALYDTFRVFGTVLSCRVLYDQE-GNSRGIAFVQYEDAEVAKQVIAQV 178
Query: 182 NSCELKGKKIKCSAAQAKHR--------------LFIGNVPRNWGEDDMRKAVTKIGPGV 227
N ++ K +K A + + + +F NV + ++D+ K G
Sbjct: 179 NDKKILDKVVKVEAYKPRRQRMLEAEETQKNFTNVFFKNVAADISDEDIMKEFENFGE-- 236
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
I +++K + +Q + F+ Y + A A+ + ++++ D V+ A ++
Sbjct: 237 IESKVLK---SHDQFGRYGFVAYKDTADAQKAVSELNDKPLGADGTKLYVARAQRKSERM 293
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
E A + LY+KN +D+T+D L+++F +G I V + + GQ
Sbjct: 294 GRLRREFERRRTEMRAKYKDANLYIKNFSEDVTEDELRKMFEAYGTIVSVRVVKDRDGQS 353
Query: 334 RSRYGFVHFAERSSAMKALKNTE-KYEIDGQVLDCS 368
R ++GFV F+ A +A++ + DG+ L S
Sbjct: 354 R-QFGFVLFSSEEEATRAIQEMNGRMTADGKPLYVS 388
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 115/252 (45%), Gaps = 16/252 (6%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + +D L +G+V VR+ + + + GY +V F + A++A++
Sbjct: 32 TSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALD 91
Query: 180 ELNSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
LN + K I+ S +FI N+ + + + G ++S +
Sbjct: 92 VLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFG-QIMSCK 150
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESSAAS 291
+ D + Q++G+ F+++ A+ + K++ ++D V + + S
Sbjct: 151 IATD--GSGQSKGYGFVQFEAEDSAQNAIDKLNG--MLINDKQVFVGHFLRKQDRDNVLS 206
Query: 292 QVKA--LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAM 349
+ K +YVKNL + T+D LK F +G IT V+ G+ + +GFV+F A
Sbjct: 207 KTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKC-FGFVNFENAEDAA 265
Query: 350 KALKNTEKYEID 361
KA++ ++D
Sbjct: 266 KAVEALNGKKVD 277
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 146/353 (41%), Gaps = 63/353 (17%)
Query: 127 IPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL 186
I H A D F G++ +I SG++KGY FV F ++ A AI++LN +
Sbjct: 131 IDHKALHDTFSSF----GQIMSCKIAT-DGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLI 185
Query: 187 KGKKIKCSAAQAK------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVK 234
K++ K + +++ N+ ++ EDD++ G + S L++
Sbjct: 186 NDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYG-TITSAVLMR 244
Query: 235 DPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---------- 284
D +++ F F+ + N A + + ++ K +DD V A ++
Sbjct: 245 DADG--RSKCFGFVNFENAEDAAKAVEALNGKK--VDDKEWYVGKAQKKSEREQELKGRF 300
Query: 285 ---AESSAASQVKAL--YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
+ S + + L Y+KNL IT ++LKE+F+ G IT I G R GF
Sbjct: 301 EQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVSRGS-GF 359
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKT---SGGSNSQKSALNPTYPPH 396
V F+ A +AL I + L ++A+ + D++ + S + A+ P+ P
Sbjct: 360 VAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMRPVAITPSVAPR 419
Query: 397 LGYGMVGGAYGALGAGYVPA--GFAQPMVYGRGAAPGGMAMLPMLLPDGRIGY 447
+ Y P G Q +YG+G AM+P P GY
Sbjct: 420 MPL-------------YPPGTPGLGQQFMYGQGPP----AMMP---PQAGFGY 452
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI G+V+ A+ + +++
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 133/284 (46%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ +++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQE 333
+ E + Q LY+KNL I ++L++ F+ G IT KV++ + G+
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML---EDGRS 332
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 333 KG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D+ L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 156/383 (40%), Gaps = 56/383 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G++ ++ + G AKGY FV F + E A+ AIE +
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAV-DELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ K A +A ++I N+ E + + G +
Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGE-I 287
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S+ LVKD QN ++ RGF F+ Y NH CA+ + ++++ ++K V A ++
Sbjct: 288 TSLSLVKD-QN-DKPRGFGFVNYANHECAQKAVDELNDKEYK--GKKLYVGRAQKKHERE 343
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
E Q L++KNL ++ +RLK F+ G IT I + G+
Sbjct: 344 EELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKS 403
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 393
+ +GFV + A KA+ + + G+ L +LA+ + ++S L
Sbjct: 404 KG-FGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRK---------EVRRSQLEAQI 453
Query: 394 PPHLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAP-------GGMAMLPMLLPDGRIG 446
+ + A G V G P++YG G P GM M+P G G
Sbjct: 454 QARNQFRLQQQVAAAAGIPAVQYGATGPLIYGPGGYPIPAAVNGRGMPMVP-----GHNG 508
Query: 447 YVLQQPGVQQHNPPPQPRSGRGG 469
+ PG+ P P G G
Sbjct: 509 PMPMYPGMPTQFPAGGPAPGYPG 531
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 114/262 (43%), Gaps = 20/262 (7%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
P + +Y+G + ++ L SIG V +R+ + + + GYA+V F E +
Sbjct: 77 PTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEK 136
Query: 177 AIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVI 228
A++ELN +KG+ + +Q L FI N+ + + G ++
Sbjct: 137 ALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGK-IL 195
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ D +G+ F+ + + A + + ++ L+D V R S
Sbjct: 196 SCKVAVD--ELGNAKGYGFVHFDSVESANAAIEHVNG--MLLNDKKVYVGHHVSRRERQS 251
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSR-YGFVHFA 343
+KA +Y+KNL +IT+ +LF G+IT + + K ++ R +GFV++A
Sbjct: 252 KVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSL--VKDQNDKPRGFGFVNYA 309
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
A KA+ E G+ L
Sbjct: 310 NHECAQKAVDELNDKEYKGKKL 331
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 10/116 (8%)
Query: 85 AQKHYDGDEEM-KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
AQK ++ +EE+ K E K ++ K+ G +++ + + D+ L+ +
Sbjct: 336 AQKKHEREEELRKRYEQMKLEKMNKY--------QGVNLFIKNLQDEVDDERLKAEFSAF 387
Query: 144 GEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
G +T +IM + G++KG+ FV + T E A++A+ E+N L GK + + AQ K
Sbjct: 388 GTITSAKIMT-DEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRK 442
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI G+V+ A+ + +++
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 129/285 (45%), Gaps = 39/285 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ +++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E + Q LY+KNL I ++L++ F+ G IT AK E
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS-----AKVMLEDG 330
Query: 336 R---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
R +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D+ L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 128/271 (47%), Gaps = 19/271 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KG+ ++ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+ F+ + AE + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN ++ ++L+ELF+ +G + + + G+ R +GFV F
Sbjct: 185 ARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRG-FGFVSFERHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A KA+ E++G+++ A+ + +++T
Sbjct: 244 AQKAVDEMNGKEMNGKLMYVGRAQKKVERQT 274
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/333 (22%), Positives = 136/333 (40%), Gaps = 44/333 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + +++ D +KGY FV F T+E A +AIE++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGE--DD--MRKAVTKIGPGV 227
N L +K+ + A+ + F +N+G+ DD +R+ +K G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYG-NA 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+SI ++ D ++RGF F+ + H A+ + +M+ + K++
Sbjct: 218 MSIRVMTD--ENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ + Q LYVKNL I +RL++ F+ G IT + G
Sbjct: 276 LKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV--MMEGGRSK 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSN------SQKSAL 389
+GFV F+ A KA+ + + L +LA+ + +++ + S ++
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVP 393
Query: 390 NPTYPPHL-----GYGMVGGAYGALGAGYVPAG 417
NP P+ GY M A Y PA
Sbjct: 394 NPVINPYQAAPPSGYFMAAIPQAQNRAAYYPAA 426
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D+ LR G +R+M ++G+++G+ F
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMT-DENGKSRGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V+F E A +A++E+N E+ GK + AQ K
Sbjct: 236 VSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKK 269
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 121/278 (43%), Gaps = 37/278 (13%)
Query: 126 GIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCE 185
GI H A D F G + ++ SG +KG+ FV F ++E A +AI++LN
Sbjct: 267 GIDHKALHDTFSAF----GNILSCKVATDA-SGMSKGHGFVQFDSEEAAQKAIDKLNGML 321
Query: 186 LKGKKIKCSAAQAK------------HRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELV 233
L K++ K + +F+ N+ E+D+ + + GP + S+ ++
Sbjct: 322 LNDKQVFVGPFVRKQERESTINKEKFNNVFVKNISEGMTEEDLTRIFGEFGP-ITSVVVM 380
Query: 234 KDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--------- 284
+D +++ F F+ + N A S + ++ KF DD V A ++
Sbjct: 381 RD--GDGKSKCFGFVNFENVDDAAMSVEALNGQKF--DDKEWYVGKAQKKSEREIELKSR 436
Query: 285 -----AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGF 339
E+ Q LY+KNL I D+LKELFA G IT + G R GF
Sbjct: 437 FEQNMKEAVDKFQGANLYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRGS-GF 495
Query: 340 VHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
V F+ A +AL + + L +LA+ + D++
Sbjct: 496 VAFSSPEEASRALAEMNSKMVVSKPLYVALAQRKEDRR 533
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 110/236 (46%), Gaps = 22/236 (9%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + + +D L + +V +R+ + + + GY +V + E A++A++
Sbjct: 169 ASLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRSLGYGYVNYTDLEDAARALD 228
Query: 180 ELNSCELKGKKIKCSAAQAKHR-----------LFIGNVPRNWGEDDMRKAVTKIGPGVI 228
LN L GK I+ + HR +FI N+ + + + G ++
Sbjct: 229 VLNFTPLNGKPIRIMYS---HRDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFG-NIL 284
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVS-WADPRNAES 287
S ++ D + ++G F+++ + A+ + K++ L+D V + + ES
Sbjct: 285 SCKVATDA--SGMSKGHGFVQFDSEEAAQKAIDKLNG--MLLNDKQVFVGPFVRKQERES 340
Query: 288 SA-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHF 342
+ + ++VKN+ + +T++ L +F G IT VV+ G+ + +GFV+F
Sbjct: 341 TINKEKFNNVFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKC-FGFVNF 395
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI G+V+ A+ + +++
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 129/285 (45%), Gaps = 39/285 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ +++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E + Q LY+KNL I ++L++ F+ G IT AK E
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS-----AKVMLEDG 330
Query: 336 R---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
R +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D+ L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI G+V+ A+ + +++
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQ 273
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 129/285 (45%), Gaps = 39/285 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ +++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E + Q LY+KNL I ++L++ F+ G IT AK E
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS-----AKVMLEDG 330
Query: 336 R---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
R +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D+ L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|464252|sp|P20397.3|NUCL_XENLA RecName: Full=Nucleolin; AltName: Full=Protein C23
gi|64937|emb|CAA44805.1| nucleolin [Xenopus laevis]
Length = 651
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 128/271 (47%), Gaps = 33/271 (12%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ IP+ + ++L+ ++ ++RI GKD G KG A+V F ++ A++A+EE
Sbjct: 327 LFVKNIPYSTTVEELQEIFEN---AKDIRIPTGKD-GSNKGIAYVEFSNEDEANKALEEK 382
Query: 182 NSCELKGKKIKCSAAQAKHR--------------LFIGNVPRNWGEDDMRKAVTKIGPGV 227
E++G+ I K + L + N+ + ED +R+ K
Sbjct: 383 QGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFEK----A 438
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
SI + PQN + +GFAFIE+ + A+ + +N + ++ + + ++ +
Sbjct: 439 TSIRI---PQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTE--IEGRSIRLEFSQGGGPQG 493
Query: 288 SA---ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++Q K L+V+ L +D T++ LKE F G + ++ G + +GFV F+
Sbjct: 494 GGRGGSAQSKTLFVRGLSEDTTEETLKEAF--DGSVNARIVTDRDTGASKG-FGFVDFST 550
Query: 345 RSSAMKALKNTEKYEIDGQVLDCSLAKPQAD 375
A A + E EIDG + AKP+ D
Sbjct: 551 AEDAKAAKEAMEDGEIDGNKVTLDFAKPKGD 581
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 114/261 (43%), Gaps = 17/261 (6%)
Query: 117 PHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQ 176
P+ + +Y+G + ++ L S+G+V +R+ + + + GYA+V + + +
Sbjct: 58 PNSASLYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSANDGER 117
Query: 177 AIEELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVI 228
A+EELN +KG+ + +Q L FI N+ + G ++
Sbjct: 118 ALEELNYTLIKGRPCRIMWSQRDPALRKTGHGNVFIKNLDGAIDNKALHDTFAAFG-NIL 176
Query: 229 SIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAESS 288
S ++ D ++G+ F+ Y A + + ++ L++ V P+ S
Sbjct: 177 SCKVAVD--ELGNSKGYGFVHYETAEAASQAIKSVNG--MLLNEKKVFVGHHIPKKDRMS 232
Query: 289 AASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAE 344
++KA +YVKN+ ++T D +ELF +G+IT + + +GFV++
Sbjct: 233 KFEEMKANFTNIYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYIN 292
Query: 345 RSSAMKALKNTEKYEIDGQVL 365
A KA+ + GQ L
Sbjct: 293 HEDAYKAVDELNDSDFHGQKL 313
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 100/234 (42%), Gaps = 30/234 (12%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
HG+ V++ + + L + G + ++ + G +KGY FV + T E ASQA
Sbjct: 148 HGN-VFIKNLDGAIDNKALHDTFAAFGNILSCKVAV-DELGNSKGYGFVHYETAEAASQA 205
Query: 178 IEELNSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKI 223
I+ +N L KK+ K +A +++ N+ +D+ R+ K
Sbjct: 206 IKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIETEVTDDEFRELFEKY 265
Query: 224 GPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLD 271
G + S L D + ++RGF F+ Y NH A + ++++ F K +
Sbjct: 266 GE-ITSASLAHDNETG-KSRGFGFVNYINHEDAYKAVDELNDSDFHGQKLYVGRAQKKHE 323
Query: 272 DNAPTVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
+ E SA Q LYVKNL ++ + L+++F +G IT +
Sbjct: 324 REEELRKQYEAARQEKSAKYQGVNLYVKNLADEVDDEELRKIFEAYGAITSAKV 377
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 102 KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAK 161
K D K E+ A + + +Y+ I + +DD+ R + GE+T + ++G+++
Sbjct: 227 KKDRMSKFEEMKA---NFTNIYVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSR 283
Query: 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G+ FV + E A +A++ELN + G+K+ AQ KH
Sbjct: 284 GFGFVNYINHEDAYKAVDELNDSDFHGQKLYVGRAQKKH 322
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI G+++ A+ + +++
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 133/284 (46%), Gaps = 37/284 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ +++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKIT--KVVIPPAKPGQE 333
+ E + Q LY+KNL I ++L++ F+ G IT KV++ + G+
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML---EDGRS 332
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 333 KG-FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D+ L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + K + + AQ K
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRK 371
>gi|340502094|gb|EGR28811.1| splicing factor subunit 4, putative [Ichthyophthirius multifiliis]
Length = 267
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 83/156 (53%), Gaps = 9/156 (5%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+GGI + + L G V V + K K +GE +GY FV F+++E A +I+
Sbjct: 12 ATIYVGGIDQKVTQEVLWELFSQCGIVVNVHLPKDKITGEHQGYGFVEFKSEEDADYSIK 71
Query: 180 ELNSCELKGKKIKCSAAQAKHR-------LFIGNVPRNWGEDDMRKAVTKIGPGVISIEL 232
++ +L GK IK + A R +FIGN+ ++ E + ++ G +IS +
Sbjct: 72 IMHLVKLYGKPIKVNKASQDKRTQEVGANIFIGNLDQSITEQQLHDTFSQFG-LIISRRI 130
Query: 233 VKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF 268
V+DP N ++++G+AF+ Y N A+ + M+ F
Sbjct: 131 VRDPDN-DESKGYAFVSYDNFEAADAAINTMNGQFF 165
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%)
Query: 119 GSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAI 178
G+ +++G + ++ L G + RI++ D+ E+KGYAFV++ E A AI
Sbjct: 98 GANIFIGNLDQSITEQQLHDTFSQFGLIISRRIVRDPDNDESKGYAFVSYDNFEAADAAI 157
Query: 179 EELNSCELKGKKIKCSAAQAK 199
+N KKI A K
Sbjct: 158 NTMNGQFFGSKKINVQYAFKK 178
>gi|242073268|ref|XP_002446570.1| hypothetical protein SORBIDRAFT_06g018280 [Sorghum bicolor]
gi|241937753|gb|EES10898.1| hypothetical protein SORBIDRAFT_06g018280 [Sorghum bicolor]
Length = 423
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 140/307 (45%), Gaps = 38/307 (12%)
Query: 133 DDDLRHFCKS-IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCEL----K 187
D++ H C GEV +++++ + +G+++GY FV F + A +A++ + +
Sbjct: 113 DENYLHSCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFFSHASAEKALQNFTGHVMPNTDR 172
Query: 188 GKKI---------KCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQN 238
K+ K S + H +F+G++ + ++ + + + V +++ D N
Sbjct: 173 AFKLNWASYSMGEKRSEVASDHSIFVGDLAADVTDEMLLELFSSKYRSVKGAKVIIDA-N 231
Query: 239 ANQNRGFAFIEY-----YNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESSAA 290
++RG+ F+ + +HA +E + S ++ P S D + S
Sbjct: 232 TGRSRGYGFVRFGDDNDKSHAMSEMNGVYCSTRPIRIGPATPRRSSGDSGSSTPGHSDGD 291
Query: 291 SQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMK 350
S + +YV L ++++D L++ FA +G + V IP K + GFV FA R+ A +
Sbjct: 292 SSNRTVYVGGLDPNVSEDELRKAFAKYGDLASVKIPLGK------QCGFVQFASRTDAEE 345
Query: 351 ALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYG---------M 401
AL+ I Q + S + + +++ G S ++++ + P + GYG M
Sbjct: 346 ALQGLNGSLIGKQAVRLSWGRSPSHKQSRGDSGNRRNNMYYGTPFYGGYGYASPVPHPNM 405
Query: 402 VGGAYGA 408
AYGA
Sbjct: 406 YAAAYGA 412
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
VY+GG+ + S+D+LR G++ V+I GK G FV F ++ A +A++ L
Sbjct: 297 VYVGGLDPNVSEDELRKAFAKYGDLASVKIPLGKQCG------FVQFASRTDAEEALQGL 350
Query: 182 NSCELKGKKIKCSAAQA 198
N + + ++ S ++
Sbjct: 351 NGSLIGKQAVRLSWGRS 367
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 94/385 (24%), Positives = 168/385 (43%), Gaps = 59/385 (15%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +++ + + L + G + ++ D G++KG+ FV + +E A A++
Sbjct: 11 ANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAM-DDIGQSKGFGFVQYEKEESAQSAMK 69
Query: 180 ELNSCELKGKKIKC-----------SAAQAK-HRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
LN + K + S +AK + +F+ N+ + +DD+ K + G G
Sbjct: 70 SLNGMLINDKPVYVGPFLRKQERDNSFDKAKFNNVFVKNLSESTTKDDLVKVFS--GYGT 127
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
I+ +V + ++R F F+ + + A + ++++ K ++D V A ++
Sbjct: 128 ITSAVVMIGMDG-KSRCFDFVNFESPDDAARAVEELNGKK--INDKEWYVGRAQKKSERE 184
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
+++ Q + LY+KNL IT D+L+ELF++ GKIT I + G
Sbjct: 185 MDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQNGVS 244
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPT- 392
+ GFV F+ R A +AL I G+ L + A+ + D+K +Q S + P
Sbjct: 245 KGS-GFVSFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAM--LQAQFSQMRPVP 301
Query: 393 -----------YPP------HLGYGMVGGAYGALGAGYVPAGFAQPMVYGRGAAPGGMAM 435
YPP L YG A GY GF Q +V G PGG A
Sbjct: 302 MTPSMTPRLPMYPPMPTLGQQLFYGQAPPAMMPPQPGY---GFQQQLV--PGMRPGGGAH 356
Query: 436 LP-MLLPDGRIGYVLQQPGVQQHNP 459
+P +P + G +PG++++ P
Sbjct: 357 MPNYFVPVVQPGQQGPRPGIRRNGP 381
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +YL + +DD LR + G++T +IM+ ++ G +KG FV+F T+E ASQA
Sbjct: 203 QGQNLYLKNLDDGITDDQLRELFSNFGKITSCKIMRDQN-GVSKGSGFVSFSTREEASQA 261
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + GK + + AQ K
Sbjct: 262 LTEMNGKMISGKPLYVAFAQRK 283
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 112/262 (42%), Gaps = 17/262 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + +Y+G + ++ L IG V +R+ + + + GYA+V + T
Sbjct: 58 PQASASLYVGELDSSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTIDGE 117
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+EELN +KG+ + +Q + +FI N+ + G +
Sbjct: 118 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFG-NI 176
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ +D A+ +G+ F+ Y A + + ++ L++ V P+
Sbjct: 177 LSCKVAQDETGAS--KGYGFVHYETDEAASQAIKHVNG--MLLNEKKVFVGHHIPKKDRQ 232
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S ++KA +YVKN+P + T + +ELF G +T + + +GFV+F
Sbjct: 233 SKFEEMKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFI 292
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
A KA+ + GQ L
Sbjct: 293 NHEHAAKAVDELNGKDFKGQDL 314
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 33/232 (14%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + ++G +KGY FV + T E ASQAI+ +
Sbjct: 152 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQ-DETGASKGYGFVHYETDEAASQAIKHV 210
Query: 182 NSCELKGKKI-------------KCSAAQAKH-RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ K +A +++ N+P +++ R+ K G V
Sbjct: 211 NGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEATDEEFRELFEKFG-DV 269
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D ++N++RGF F+ + NH A + +++ FK D V A ++
Sbjct: 270 TSASLARD-TDSNKSRGFGFVNFINHEHAAKAVDELNGKDFKGQD--LYVGRAQKKHERE 326
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI 325
E ++ Q LYVKNL D+ D+L+ELF G IT +
Sbjct: 327 EELRKSYEAARIEKASKYQGVNLYVKNLDDDVDDDKLRELFTPFGSITSAKV 378
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
Query: 85 AQKHYDGD--EEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKS 142
A KH +G E KV +K + ++ + + + +Y+ IP +A+D++ R +
Sbjct: 206 AIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEATDEEFRELFEK 265
Query: 143 IGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH 200
G+VT + + DS +++G+ FV F E A++A++ELN + KG+ + AQ KH
Sbjct: 266 FGDVTSASLARDTDSNKSRGFGFVNFINHEHAAKAVDELNGKDFKGQDLYVGRAQKKH 323
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 126/271 (46%), Gaps = 19/271 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK ++ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+ F+ + AE + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +D+ +RLKELF G V + + G+ + +GFV F
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKG-FGFVSFERHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A KA+ E++G+ + A+ + +++T
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQT 274
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 142/358 (39%), Gaps = 49/358 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + +++ D +KGY FV F T+E A +AIE++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + A+ + F +N+GED +++ K GP
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA- 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S++++ D + +++GF F+ + H A+ + +M+ + K++
Sbjct: 218 LSVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ + Q LYVKNL I +RL++ F+ G IT + G
Sbjct: 276 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV--MMEGGRSK 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAK----------PQADQKTSGGSNSQ 385
+GFV F+ A KA+ + + L +LA+ Q Q+ +
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVP 393
Query: 386 KSALNPTYP-PHLGYGMVGGAYGALGAGYVPAG-FAQ----PMVYGRGAAPGGMAMLP 437
+NP P P GY M A Y P AQ P +GA P +P
Sbjct: 394 NPVINPYQPAPPSGYFMAAIPQTQNRAAYYPTSQLAQLRPSPRWTAQGARPHPFQNMP 451
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ D D+ L+ G V++M +SG++KG+ F
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMT-DESGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V+F E A +A++E+N EL GK+I AQ K
Sbjct: 236 VSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 68 EEVEEEEETEDVVDG--IDAQKHYDGDEEMKV---AESDKDDEKKKHAELLALPPHGSEV 122
E E+ ++ D ++G ++ ++ Y G + KV E + E+ K + G +
Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY--QGVNL 296
Query: 123 YLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELN 182
Y+ + D+ LR G +T ++M + G +KG+ FV F + E A++A+ E+N
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 183 SCELKGKKIKCSAAQAK 199
+ K + + AQ K
Sbjct: 355 GRIVATKPLYVALAQRK 371
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 128/270 (47%), Gaps = 19/270 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G V +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KGK I+ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+AF+ + A+ + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYAFVHFETQEAADKAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN +++ + LKELF+ GK V + G+ + +GFV + +
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKG-FGFVSYEKHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
A KA++ EI G+V+ A+ + +++
Sbjct: 244 ANKAVEEMNGKEITGKVIFVGRAQKKVERQ 273
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 130/285 (45%), Gaps = 39/285 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + +++ D +KGYAFV F T+E A +AIE++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGED----DMRKAVTKIGPGV 227
N L +K+ + AK + F +N+GE+ ++++ ++ G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGK-T 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+S+++++DP + +++GF F+ Y H A + ++M+ + K++ A
Sbjct: 218 LSVKVMRDP--SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ E + Q LY+KNL I ++L++ F+ G IT AK E
Sbjct: 276 LKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITS-----AKVMLEDG 330
Query: 336 R---YGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
R +GFV F+ A KA+ + + L +LA+ + ++K
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 29/169 (17%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D++L+ G+ V++M+ SG++KG+ F
Sbjct: 177 KEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR-DPSGKSKGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK------------------------HR 201
V++ E A++A+EE+N E+ GK I AQ K
Sbjct: 236 VSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN 295
Query: 202 LFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEY 250
L+I N+ ++ +RK + G SI K +++GF F+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFG----SITSAKVMLEDGRSKGFGFVCF 340
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 68 EEVEEEEETEDVVDGIDAQKHYDGDEEMKVAESDKDDEKKKHAELLALPPHGSEVYLGGI 127
EE+ +E T V+ AQK + E+K E+ + G +Y+ +
Sbjct: 249 EEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQ-------GVNLYIKNL 301
Query: 128 PHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK 187
D+ LR G +T ++M + G +KG+ FV F + E A++A+ E+N +
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 188 GKKIKCSAAQAK 199
K + + AQ K
Sbjct: 360 SKPLYVALAQRK 371
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 118/262 (45%), Gaps = 18/262 (6%)
Query: 116 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELAS 175
P + + +Y+G + ++ L IG V +R+ + + + GYA+V + +
Sbjct: 55 PQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTSDGE 114
Query: 176 QAIEELNSCELKGKKIKCSAAQ--------AKHRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
+A+EELN +KG+ + +Q + +FI N+ + G +
Sbjct: 115 KALEELNYTIIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG-NI 173
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNAES 287
+S ++ +D ++G+ F+ Y A+ + + ++ L++ V P+
Sbjct: 174 LSCKVAQDEH--GNSKGYGFVHYETDEAAQQAIKHVNG--MLLNEKKVYVGHHIPKKDRQ 229
Query: 288 SAASQVKA----LYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFA 343
S ++KA +YVKN+ + + D +ELF +G+IT + + G+ R +GFV++
Sbjct: 230 SKFEEMKANFTNIYVKNVNPEASDDEFRELFERYGEITSSSLARDQDGKSRG-FGFVNYT 288
Query: 344 ERSSAMKALKNTEKYEIDGQVL 365
SA KA+ + GQ L
Sbjct: 289 THESAYKAVDELNGKDFKGQDL 310
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 78/158 (49%), Gaps = 29/158 (18%)
Query: 102 KDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAK 161
K D + K E+ A + + +Y+ + +ASDD+ R + GE+T + + +D G+++
Sbjct: 225 KKDRQSKFEEMKA---NFTNIYVKNVNPEASDDEFRELFERYGEITSSSLARDQD-GKSR 280
Query: 162 GYAFVTFRTKELASQAIEELNSCELKGKKIKCSAAQAKH--------------------- 200
G+ FV + T E A +A++ELN + KG+ + AQ KH
Sbjct: 281 GFGFVNYTTHESAYKAVDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARLEKASKY 340
Query: 201 ---RLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKD 235
L+I N+ + ++ +R ++ GP + S ++++D
Sbjct: 341 QGVNLYIKNLDDDVDDEKLRHMFSEFGP-ITSAKVMRD 377
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 122/315 (38%), Gaps = 71/315 (22%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
V++ + + L + G + ++ + + G +KGY FV + T E A QAI+ +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ-DEHGNSKGYGFVHYETDEAAQQAIKHV 207
Query: 182 NSCELKGKKIKCSA------AQAKH--------RLFIGNVPRNWGEDDMRKAVTKIGPGV 227
N L KK+ Q+K +++ NV +D+ R+ + G +
Sbjct: 208 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNVNPEASDDEFRELFERYGE-I 266
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN--- 284
S L +D ++RGF F+ Y H A + +++ FK D V A ++
Sbjct: 267 TSSSLARD--QDGKSRGFGFVNYTTHESAYKAVDELNGKDFKGQD--LYVGRAQKKHERE 322
Query: 285 -----------AESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVI-------- 325
E ++ Q LY+KNL D+ ++L+ +F+ G IT +
Sbjct: 323 EELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDEKLRHMFSEFGPITSAKVMRDAPSDG 382
Query: 326 -----------PPAKPGQ------------------ERSRYGFVHFAERSSAMKALKNTE 356
P K G + +GFV F+ A KA+
Sbjct: 383 SDEEKEDEQEAEPKKEGNVVEADEEGSEKKGDKKFGKSKGFGFVCFSNPDDATKAVAEMS 442
Query: 357 KYEIDGQVLDCSLAK 371
+ I+G+ L +LA+
Sbjct: 443 QRMINGKPLYVALAQ 457
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 46/153 (30%)
Query: 85 AQKHYDGDEEM-KVAESDKDDEKKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSI 143
AQK ++ +EE+ K E+ + ++ K+ G +Y+ + D D+ LRH
Sbjct: 315 AQKKHEREEELRKSYEAARLEKASKY--------QGVNLYIKNLDDDVDDEKLRHMFSEF 366
Query: 144 GEVTEVRIMKG-------------------------------------KDSGEAKGYAFV 166
G +T ++M+ K G++KG+ FV
Sbjct: 367 GPITSAKVMRDAPSDGSDEEKEDEQEAEPKKEGNVVEADEEGSEKKGDKKFGKSKGFGFV 426
Query: 167 TFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
F + A++A+ E++ + GK + + AQ K
Sbjct: 427 CFSNPDDATKAVAEMSQRMINGKPLYVALAQRK 459
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 115/252 (45%), Gaps = 18/252 (7%)
Query: 113 LALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKE 172
+A P + +Y+G + SD L G+V VR+ + S + GYA+V +
Sbjct: 27 VAQPLPTTSLYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPL 86
Query: 173 LASQAIEELNSCELKGKKIKC--------SAAQAKHRLFIGNVPRNWGEDDMRKAVTKIG 224
A++A+E LN L K I+ S +FI N+ + + + + G
Sbjct: 87 DAARALEVLNFAALNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFG 146
Query: 225 PGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN 284
++S ++ D A Q++GF F++Y A+ + + ++ L ++ P R
Sbjct: 147 T-ILSCKVAVDE--AGQSKGFGFVQYDKEEAAQNAIKSLNG---MLINDKPVFVGPFVRK 200
Query: 285 AE---SSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVH 341
E S ++ ++VKNL + T++ L ++F +G IT V+ G+ R +GF++
Sbjct: 201 QERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGDITSAVVMIGMDGKSRC-FGFIN 259
Query: 342 FAERSSAMKALK 353
F +A A++
Sbjct: 260 FENPDAASHAVQ 271
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 125/284 (44%), Gaps = 33/284 (11%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +++ + + L S G + ++ ++G++KG+ FV + +E A AI+
Sbjct: 122 ANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAV-DEAGQSKGFGFVQYDKEEAAQNAIK 180
Query: 180 ELNSCELKGKKIKCSAAQAK------------HRLFIGNVPRNWGEDDMRKAVTKIGPGV 227
LN + K + K + +F+ N+ + ++D+ K + G
Sbjct: 181 SLNGMLINDKPVFVGPFVRKQERDHSFDKTKFNNVFVKNLSESTTKEDLLKIFGEYGDIT 240
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP----- 282
++ ++ ++R F FI + N A ++ Q+++ K ++D V A
Sbjct: 241 SAVVMIGMD---GKSRCFGFINFENPDAASHAVQELNGKK--INDKEWYVGRAQKKSERE 295
Query: 283 ----RNAESS---AASQVKAL--YVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQE 333
R E S AA + + L Y+KNL I D+L ELF++ GKIT + + G
Sbjct: 296 MELKRRFEQSLKDAADKYQGLNLYLKNLDDSIGDDQLCELFSNFGKITSYKVMRDQNGLS 355
Query: 334 RSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQK 377
+ GFV F+ R A +AL I G+ L + A+ + D+K
Sbjct: 356 KGS-GFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRK 398
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 118 HGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQA 177
G +YL + DD L + G++T ++M+ ++ G +KG FV F T+E ASQA
Sbjct: 314 QGLNLYLKNLDDSIGDDQLCELFSNFGKITSYKVMRDQN-GLSKGSGFVAFSTREEASQA 372
Query: 178 IEELNSCELKGKKIKCSAAQAK 199
+ E+N + GK + + AQ K
Sbjct: 373 LTEMNGKMISGKPLYVAFAQRK 394
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 128/271 (47%), Gaps = 19/271 (7%)
Query: 120 SEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIE 179
+ +Y+G + D ++ L G + +R+ + + + GYA+V F+ A +A++
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 180 ELNSCELKGKKIKCSAAQAKHRL--------FIGNVPRNWGEDDMRKAVTKIGPGVISIE 231
+N +KG+ ++ +Q L FI N+ ++ + + G ++S +
Sbjct: 71 TMNFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCK 129
Query: 232 LVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRN---AESS 288
+V D N ++G+ F+ + AE + +KM+ L+D V R AE
Sbjct: 130 VVCD---ENGSKGYGFVHFETQEAAERAIEKMNG--MLLNDRKVFVGRFKSRKEREAELG 184
Query: 289 A-ASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSS 347
A A + +Y+KN ++ ++L+ELF+ +G + + + G+ R +GFV F
Sbjct: 185 ARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRG-FGFVSFERHED 243
Query: 348 AMKALKNTEKYEIDGQVLDCSLAKPQADQKT 378
A KA+ E++G+++ A+ + +++T
Sbjct: 244 AQKAVDEMNGKEMNGKLMYVGRAQKKVERQT 274
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/333 (22%), Positives = 136/333 (40%), Gaps = 44/333 (13%)
Query: 122 VYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEEL 181
+++ + + L + G + +++ D +KGY FV F T+E A +AIE++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERAIEKM 158
Query: 182 NSCELKGKKIKCSAAQ----------AKHRLFIGNVPRNWGE--DD--MRKAVTKIGPGV 227
N L +K+ + A+ + F +N+G+ DD +R+ +K G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYG-NA 217
Query: 228 ISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKF------------KLDDNAP 275
+SI ++ D ++RGF F+ + H A+ + +M+ + K++
Sbjct: 218 MSIRVMTD--ENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTE 275
Query: 276 TVSWADPRNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERS 335
+ + Q LYVKNL I +RL++ F+ G IT + G
Sbjct: 276 LKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV--MMEGGRSK 333
Query: 336 RYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSN------SQKSAL 389
+GFV F+ A KA+ + + L +LA+ + +++ + S ++
Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVP 393
Query: 390 NPTYPPHL-----GYGMVGGAYGALGAGYVPAG 417
NP P+ GY M A Y PA
Sbjct: 394 NPVINPYQAAPPSGYFMAAIPQAQNRAAYYPAA 426
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 106 KKKHAELLALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAF 165
K++ AEL A + VY+ + D+ LR G +R+M ++G+++G+ F
Sbjct: 177 KEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAMSIRVMT-DENGKSRGFGF 235
Query: 166 VTFRTKELASQAIEELNSCELKGKKIKCSAAQAK 199
V+F E A +A++E+N E+ GK + AQ K
Sbjct: 236 VSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKK 269
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.309 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,764,021,763
Number of Sequences: 23463169
Number of extensions: 426020138
Number of successful extensions: 6241037
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 33869
Number of HSP's successfully gapped in prelim test: 30810
Number of HSP's that attempted gapping in prelim test: 4294665
Number of HSP's gapped (non-prelim): 891882
length of query: 493
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 346
effective length of database: 8,910,109,524
effective search space: 3082897895304
effective search space used: 3082897895304
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 79 (35.0 bits)