Query 011112
Match_columns 493
No_of_seqs 132 out of 1462
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 21:03:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 3.7E-30 1.3E-34 265.8 23.7 381 8-455 25-412 (451)
2 3o7q_A L-fucose-proton symport 100.0 1.9E-28 6.6E-33 252.1 33.0 351 10-454 25-409 (438)
3 4gc0_A D-xylose-proton symport 99.9 5.6E-26 1.9E-30 237.4 26.9 428 7-490 4-469 (491)
4 2gfp_A EMRD, multidrug resista 99.9 2E-27 6.9E-32 239.8 11.9 348 15-454 4-354 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.9 1.2E-24 4.3E-29 227.3 26.9 405 10-451 12-447 (491)
6 2cfq_A Lactose permease; trans 99.9 8.9E-25 3E-29 224.4 11.9 391 6-486 2-402 (417)
7 2xut_A Proton/peptide symporte 99.9 7.5E-21 2.6E-25 200.4 19.5 173 12-194 13-196 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.3 4.1E-11 1.4E-15 122.8 18.8 181 8-196 249-433 (451)
9 3o7q_A L-fucose-proton symport 99.1 1.6E-09 5.4E-14 110.5 17.9 167 7-188 254-424 (438)
10 2cfq_A Lactose permease; trans 99.1 1.5E-09 5E-14 110.8 17.1 158 31-200 241-404 (417)
11 4aps_A DI-OR tripeptide H+ sym 98.9 1.3E-08 4.4E-13 105.6 13.1 133 313-455 35-175 (491)
12 2xut_A Proton/peptide symporte 98.8 2.7E-08 9.2E-13 104.1 11.2 133 313-454 34-176 (524)
13 2gfp_A EMRD, multidrug resista 98.7 1E-08 3.5E-13 102.4 5.3 152 319-488 27-179 (375)
14 4gc0_A D-xylose-proton symport 98.7 7.8E-07 2.7E-11 92.0 19.1 159 35-202 301-469 (491)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97 E-value=3.7e-30 Score=265.75 Aligned_cols=381 Identities=13% Similarity=0.022 Sum_probs=263.0
Q ss_pred hchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHH
Q 011112 8 FGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVI 85 (493)
Q Consensus 8 ~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~ 85 (493)
.+++.++.+...++..++.. ..... .+.+.+++ .|..+.|++.+++.++..+ +|++|+++||+ +||+.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----g~r~~l~~ 97 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALA-MPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-----NPRVFLPA 97 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHH-HHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-----CchHHHHH
Confidence 34555555666677777764 44444 44556778 9999999999999999887 89999999995 68889999
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHH
Q 011112 86 STVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLL 165 (493)
Q Consensus 86 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i 165 (493)
+.++.+++.+++++.+....+++.+++.|++.|++.+...+..++++.|..+ +++|++++++......+|.++|+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~---~~~r~~~~~~~~~~~~~g~~~g~~~ 174 (451)
T 1pw4_A 98 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWS---QKERGGIVSVWNCAHNVGGGIPPLL 174 (451)
T ss_dssp HHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCT---TTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCC---chhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888721101256678899999999999999999999999884 4899999999999999999999999
Q ss_pred HHHhhcccc-HHHHHHHHHHHHHHHHHH-hhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhh
Q 011112 166 GGYALTNIE-IDRIFLLFTVLPAIQLLS-CGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKR 243 (493)
Q Consensus 166 ~g~l~~~~g-w~~~f~~~~~~~~l~~i~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (493)
++++.++.| ||+.|++.+++.++..+. .+++||++++.+.+.++ +.+ +..+ ++.. ++ .+
T Consensus 175 ~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~---~~~~---~~------~~ 235 (451)
T 1pw4_A 175 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE----EYK---NDYP---DDYN---EK------AE 235 (451)
T ss_dssp HHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT----TTC---CC----------------------
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChh----hhc---cccc---ccch---hh------hh
Confidence 999988888 999999988777666544 45678766543211000 000 0000 0000 00 00
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCC
Q 011112 244 KKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILN 323 (493)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g 323 (493)
++ . +.++. ..++.+|+|.++...+..++............+.|.++.+|
T Consensus 236 ~~-------~----------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 284 (451)
T 1pw4_A 236 QE-------L----------------------TAKQI--FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKH 284 (451)
T ss_dssp --------------------------------CCTHH--HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSC
T ss_pred cc-------c----------------------ccccc--hHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00 0 11111 12456778887766555444333333333445667777789
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHH
Q 011112 324 LEASFLGTARVVGWVGLMLGTYTYNGYLKRL--KLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVD 401 (493)
Q Consensus 324 ~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~--~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~ 401 (493)
+++.+.++......++.+++.++.+++.||+ ++|+.+..+.++.....++.+.... ..+.+.......+..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g 357 (451)
T 1pw4_A 285 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP-------AGNPTVDMICMIVIG 357 (451)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC-------TTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhc-------ccCHHHHHHHHHHHH
Confidence 9999999998888899999999999999999 9998888776665522222221111 011111111112222
Q ss_pred HHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhh-hhhhhHhHHHHhHHhhcC
Q 011112 402 AVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNF-GSTVGSFFGAGLASSLSI 455 (493)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~l-g~~~~~~i~g~l~~~~g~ 455 (493)
...........+++.+..|++.+|+++|+++.+.++ |..+++.+.|.+.+..|+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~ 412 (451)
T 1pw4_A 358 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 412 (451)
T ss_dssp HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred HHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 222223333467899999999999999999999999 999999999999997653
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=1.9e-28 Score=252.05 Aligned_cols=351 Identities=12% Similarity=0.123 Sum_probs=252.9
Q ss_pred hhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHH
Q 011112 10 VSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIST 87 (493)
Q Consensus 10 ~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~ 87 (493)
+..++.+...++..++.. .... ..|.+++++|.|..+.|+..+.+.+++.+ +|++|+++||+ +||+.++.+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-----g~r~~l~~~~ 98 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDI-LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-----SYKAGIITGL 98 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----cchHHHHHHH
Confidence 334445566677788764 4444 44556888999999999999999999887 89999999995 6888899999
Q ss_pred HHHHHHHHHH---hhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHH
Q 011112 88 VLSLVPWLIL---GLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSL 164 (493)
Q Consensus 88 ~l~~~~~~~~---~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~ 164 (493)
++.+++.+++ ...+ +++.+++.|++.|++.+...+..++++.|..+ +++|+++.++...+..+|..+|+.
T Consensus 99 ~~~~~~~~~~~~~~~~~----~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~g~~~g~~ 171 (438)
T 3o7q_A 99 FLYALGAALFWPAAEIM----NYTLFLVGLFIIAAGLGCLETAANPFVTVLGP---ESSGHFRLNLAQTFNSFGAIIAVV 171 (438)
T ss_dssp HHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC---STTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccc----cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcC---chhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888887 5543 57888999999999999999999999999884 589999999999999999999999
Q ss_pred HHHHhh-cccc-------------------------HHHHHHHHHHHHHHHHHHhhcc--ccccccchhhhcccccCCCc
Q 011112 165 LGGYAL-TNIE-------------------------IDRIFLLFTVLPAIQLLSCGLV--KENRVSTKVLKEFSSSNGYH 216 (493)
Q Consensus 165 i~g~l~-~~~g-------------------------w~~~f~~~~~~~~l~~i~~~~~--~e~~~~~~~~~~~~~~~~~~ 216 (493)
+++.+. +..+ ||+.|++.+++..+..+..++. ||++++.+ + +
T Consensus 172 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---------~-~ 241 (438)
T 3o7q_A 172 FGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH---------S-D 241 (438)
T ss_dssp HTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCC---------C-C
T ss_pred HHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccc---------c-c
Confidence 999998 5554 9999988776665555444433 33322110 0 0
Q ss_pred ccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHH
Q 011112 217 QVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRP 296 (493)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 296 (493)
+ ++ + +.++ ..++.+|+|.++..
T Consensus 242 -----------~-----~~---------~------------------------------~~~~---~~~~~~~~~~~~~~ 263 (438)
T 3o7q_A 242 -----------A-----KQ---------G------------------------------SFSA---SLSRLARIRHWRWA 263 (438)
T ss_dssp -----------S-----ST---------T------------------------------SHHH---HHHHHTTCSHHHHH
T ss_pred -----------c-----cc---------c------------------------------chhh---hHHHHHhChHHHHH
Confidence 0 00 0 1111 23456788887776
Q ss_pred HHHHHHHHhcccCCCcceeee-eeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhh
Q 011112 297 MAWFFLAHVAVPNLSTVMFYY-QTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDI 375 (493)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~~~~-~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~ 375 (493)
.+..++............+.| .++.+|+++.+.+.......++.+++.++.+++.||+++|+.+..+.++..+..+. .
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~-~ 342 (438)
T 3o7q_A 264 VLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLI-S 342 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-H
Confidence 555444333332233334556 66778999999999988888899999999999999999999998888777665322 2
Q ss_pred hheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhc
Q 011112 376 VLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLS 454 (493)
Q Consensus 376 ~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g 454 (493)
... +...... ...+..+..........++..+..|++ ++++.++.. .+.+|..++|.+.|.+.+..|
T Consensus 343 ~~~---------~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 343 AFA---------GGHVGLI-ALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHC---------CHHHHHH-HHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHc---------CCcHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 111 1111111 112222233333333467778888876 888888877 778999999999999999887
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.95 E-value=5.6e-26 Score=237.42 Aligned_cols=428 Identities=14% Similarity=0.077 Sum_probs=259.7
Q ss_pred hhchhHHHHH----HHHHHHHhHHH-hHHHHHHHHHHhhhCC--------CHhhHHHHHHHHHhhHhh-hhhhhhccccc
Q 011112 7 VFGVSFLWLI----CLIYFTQGFRS-FVWTAVSYQLKDKLKF--------SPSASQFVSAVAFFPWSI-KPLYGILSDCI 72 (493)
Q Consensus 7 ~~~~~~~~~~----~~~~f~~g~~~-~~~~~~~~~l~~~~g~--------s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~ 72 (493)
.++.++++.+ .+..|+.|++. .++.+++ .++++++. +.++.|+..+.+.++..+ .+++|+++||+
T Consensus 4 ~~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~ 82 (491)
T 4gc0_A 4 QYNSSYIFSITLVATLGGLLFGYDTAVISGTVE-SLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF 82 (491)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHH-HHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred CcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555433 44557788874 6665544 44666632 234567888888899888 68899999995
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhhccc--------------chhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 011112 73 PIKGRKRIPYLVISTVLSLVPWLILGLNAF--------------FRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKS 138 (493)
Q Consensus 73 ~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~--------------~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~ 138 (493)
+||+.++++.+++.++.+++++.+. ...+++.+++.|+++|++.+...+....++.|..
T Consensus 83 -----GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~-- 155 (491)
T 4gc0_A 83 -----GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELA-- 155 (491)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--
T ss_pred -----cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--
Confidence 7899999999999999888875321 1246788999999999999999999999999998
Q ss_pred hchhcchhHHHHHHHHHHHHHHHHHHHHHHhhc--------cccHHHHHHHHHHHHHHHHHHhhccccccccchhhhccc
Q 011112 139 ERAAFAGDLQSLSWLAMAFGGICGSLLGGYALT--------NIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFS 210 (493)
Q Consensus 139 ~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~--------~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~ 210 (493)
|+++|++..+....+...|.++++.++..+.. ...||+.+.+..+..++..+..++.||++++...+.+..
T Consensus 156 -p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~ 234 (491)
T 4gc0_A 156 -PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQE 234 (491)
T ss_dssp -CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHH
T ss_pred -CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchh
Confidence 56999999999999999999999988877654 245888887777666666667778999987763221100
Q ss_pred ccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcc
Q 011112 211 SSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQ 290 (493)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 290 (493)
..+ +.+ ++........+.. . +.....+..++. .......+.
T Consensus 235 ~a~--~~l---------------~~~~~~~~~~~~~------~---------------~~~~~~~~~~~~-~~~~~~~~~ 275 (491)
T 4gc0_A 235 QAE--GIL---------------RKIMGNTLATQAV------Q---------------EIKHSLDHGRKT-GGRLLMFGV 275 (491)
T ss_dssp HHH--HHH---------------HHHHHHHHHHHHH------H---------------HHHHHHHHHHHH-TTHHHHSCC
T ss_pred HHH--HhH---------------HHhcCCchhHHHH------H---------------HHHHHHHhhhhh-hhHHHHhcc
Confidence 000 000 0000000000000 0 000000000110 011122233
Q ss_pred cchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 011112 291 PEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSIL 370 (493)
Q Consensus 291 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~ 370 (493)
++........++..............+..+..+.+............+..+++.++.+++.||.|+|+.+..+.....++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIG 355 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHH
Confidence 33332222222211111100000111222346777777766667777888888999999999999999998887777665
Q ss_pred hhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHH-HHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHh
Q 011112 371 SFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPF-LILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGL 449 (493)
Q Consensus 371 ~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l 449 (493)
.+........ .......+....+........+.|. +.+.+|+.|++.|++++|+.++++++++.+++.+.+.+
T Consensus 356 ~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l 429 (491)
T 4gc0_A 356 MFSLGTAFYT------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMM 429 (491)
T ss_dssp HHHHHHHHHT------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHhc------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322111110 0111111111111122223334444 57899999999999999999999999999999888877
Q ss_pred HHhhcCCCCCccchHHHHHHHHhhhhhhhhhh-hcccCCCCC
Q 011112 450 ASSLSISSGSFDNLLLGISIQALCTFIPIAFL-FLIPKGATG 490 (493)
Q Consensus 450 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~ 490 (493)
.+..+.... .+....+.+.+++++++.+++ .++||++++
T Consensus 430 ~~~~~~~~~--~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 430 DKNSWLVAH--FHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp CHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 653211100 011234455666666666665 689998875
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.94 E-value=2e-27 Score=239.78 Aligned_cols=348 Identities=16% Similarity=0.128 Sum_probs=237.6
Q ss_pred HHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHH
Q 011112 15 LICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLV 92 (493)
Q Consensus 15 ~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~ 92 (493)
.+....++.++.. ..... .+.+.+++|.|+++.|+..+++.++..+ +|++|+++||+ +||+.++.+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~ 77 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPA-IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-----GRRPVILVGMSIFML 77 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-----CCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhh-hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchhHHHHHHHHHH
Confidence 3455666777654 44444 4455788999999999999999999877 89999999995 566777788888888
Q ss_pred HHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011112 93 PWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTN 172 (493)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~ 172 (493)
+.+.+.+.+ +++.+++.|++.+++.+...+..++++.|..+ +++|++++++......+|..+|+.+++++.++
T Consensus 78 ~~~~~~~~~----~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 78 ATLVAVTTS----SLTVLIAASAMQGMGTGVGGVMARTLPRDLYE---RTQLRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHhc----cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 888777764 57788899999999999999999999999984 48999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHH-HhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhh
Q 011112 173 IEIDRIFLLFTVLPAIQLL-SCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQK 251 (493)
Q Consensus 173 ~gw~~~f~~~~~~~~l~~i-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (493)
.+||+.|++.+++.++..+ ..+++||+++++++ ++ + + +
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-----------~-----~----------~------ 189 (375)
T 2gfp_A 151 WNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP---------RT-----------R-----L----------L------ 189 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCC---------CC-----------C-----T----------T------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcc---------cc-----------c-----H----------H------
Confidence 9999999988877665554 33456776543310 00 0 0 0
Q ss_pred hhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHH
Q 011112 252 KRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGT 331 (493)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl 331 (493)
. +.+ +.+|+|+++...+..++............+.|.++.+|+|+.+.|.
T Consensus 190 -~----------------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 239 (375)
T 2gfp_A 190 -T----------------------SYK-------TLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSI 239 (375)
T ss_dssp -T----------------------CST-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHH
T ss_pred -H----------------------HHH-------HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 0 011 1123344444333333322222222333456666668889989999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHH
Q 011112 332 ARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPF 411 (493)
Q Consensus 332 ~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~ 411 (493)
......++.+++..+.+++.||.++ + +..+..+..+..+........ . .++.+.......+..+..+......
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~r~~~-~-~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~l~g~~~~~~~~~~ 312 (375)
T 2gfp_A 240 LFILPIPAAFFGAWFAGRPNKRFST-L-MWQSVICCLLAGLLMWIPDWF-G----VMNVWTLLVPAALFFFGAGMLFPLA 312 (375)
T ss_dssp HHHTHHHHHHHHHHHHHTTTTHHHH-H-HHHHHHHHHHTSSSSSHHHHH-H----HHHHHHHHHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHhhh-c----cccHHHHHHHHHHHHHHHHHhhHHH
Confidence 8888889999999999999998766 2 223322211111111111000 0 0011111111222223333334444
Q ss_pred HHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhc
Q 011112 412 LILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLS 454 (493)
Q Consensus 412 ~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g 454 (493)
.++..|..| +++|+++|+.+...++|..+++.+.|.+.+..+
T Consensus 313 ~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 313 TSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp HHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred HHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 677888888 899999999999999999999999998887644
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.93 E-value=1.2e-24 Score=227.34 Aligned_cols=405 Identities=12% Similarity=0.016 Sum_probs=234.5
Q ss_pred hhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhh-----hCCCHhhHHHHHHHHHhhHhh-hhhhhhcccc-cccCCCCchh
Q 011112 10 VSFLWLICLIYFTQGFRS-FVWTAVSYQLKDK-----LKFSPSASQFVSAVAFFPWSI-KPLYGILSDC-IPIKGRKRIP 81 (493)
Q Consensus 10 ~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~-----~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr-~~~~g~~rr~ 81 (493)
++..+.+....+...+.. .....++++++++ +|.|..+.|+..+++.++..+ ++++|+++|| + +||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-----g~r~ 86 (491)
T 4aps_A 12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-----GARP 86 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----CHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cchH
Confidence 445555656666666543 4456667788877 999999999999999999887 7999999999 5 6888
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHH
Q 011112 82 YLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGIC 161 (493)
Q Consensus 82 ~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~l 161 (493)
.++.+.++..++.+++++.+ +.+.+++.|+++|++.+...+...+++.|..++ +.++|+.+.+++....++|..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~ 161 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPF----GASALFGSIILIIIGTGFLKPNVSTLVGTLYDE-HDRRRDAGFSIFVFGINLGAFI 161 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCC----STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-CTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc-ccccceeeehHHHHHHHHHHHH
Confidence 89999999999888888765 466788999999999999999999999999864 2234888899999999999999
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHhhcc-ccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhh
Q 011112 162 GSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLV-KENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNIST 240 (493)
Q Consensus 162 g~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (493)
||.+++++.++.|||+.|++.++..++..+..++. |+..++...+++ + +.. +++
T Consensus 162 ~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~------------~~~----~~~---- 216 (491)
T 4aps_A 162 APLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPT-----D------------PLA----PEE---- 216 (491)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCS-----C------------CCS----HHH----
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCC-----C------------ccc----cch----
Confidence 99999999999999999999876655544433322 322211100000 0 000 000
Q ss_pred hhhhhhhhhh-----hhhhhhhhhccCCCCCCchhH------------HHHhhHHHHHHHHHHhhcccchHHHHHHHHHH
Q 011112 241 KKRKKNKKNQ-----KKRMFKIRKSQIPEKNNPLVI------------QWFHSLKAAIYSLYSAFRQPEILRPMAWFFLA 303 (493)
Q Consensus 241 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 303 (493)
..+..++... ....+-.... +...+..... .+....++......+..+....+...+..++.
T Consensus 217 ~~~~~~~~g~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (491)
T 4aps_A 217 VKPLLVKVSLAVAGFIAIIVVMNLV-GWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLF 295 (491)
T ss_dssp HHHHHHHCCCCCHHHHHHHHHHHHH-SSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc-cCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 0000000000 0000000000 00000000000000000111122222222222
Q ss_pred HhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH-----HHHHHHHHHhhhhhhhe
Q 011112 304 HVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILL-----LTQVGLSILSFLDIVLV 378 (493)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~-----~~~~~~~~~~l~~~~~~ 378 (493)
+..........+.|..+..+.+..+.+.......++.+++.++.+++.||.++|+... .+.++..++.+.. ...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~ 374 (491)
T 4aps_A 296 WAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLM-AIP 374 (491)
T ss_dssp HHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTT-HHH
T ss_pred HHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHH-HHH
Confidence 2222223333455656666776556666666677777788888899999998875443 4544444432221 111
Q ss_pred eccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHH
Q 011112 379 SRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLAS 451 (493)
Q Consensus 379 ~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~ 451 (493)
............+.......+..........+.++++.|..|++.||+++|+.+...++|..+++.+++.+.+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 375 GALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp HHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1000000000111111111222222233344457889999999999999999999999999999999887765
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.91 E-value=8.9e-25 Score=224.38 Aligned_cols=391 Identities=14% Similarity=0.099 Sum_probs=221.6
Q ss_pred hhhchhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHH
Q 011112 6 NVFGVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYL 83 (493)
Q Consensus 6 ~~~~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~i 83 (493)
+.++.+..+.+...+++..+. +.....++.++++++|.|+.+.|...+.+.+...+ +|++|+++||+ +||+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-----Grr~~l 76 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-----GLRKYL 76 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-----TTCCHH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHH
Confidence 345566666565555554443 34455667788888999999999999999988887 89999999996 456666
Q ss_pred HHHHHHHHHHH---HHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHH
Q 011112 84 VISTVLSLVPW---LILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGI 160 (493)
Q Consensus 84 i~~~~l~~~~~---~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~ 160 (493)
+.+..+..+.. ..+.+.+. ........+.+.+++.+.........+.+..++ .+++++...|......++|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~ 152 (417)
T 2cfq_A 77 LWIITGMLVMFAPFFIFIFGPL---LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK-VSRRSNFEFGRARMFGCVGWA 152 (417)
T ss_dssp HHHHHHTTSCHHHHHHHTHHHH---HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHH-HHHHHTCCHHHHSSSTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-hhhhcccchHHHHHHHHHHHH
Confidence 66655544321 11111110 000112334444443333332233333333332 125567777888778889999
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhh
Q 011112 161 CGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNIST 240 (493)
Q Consensus 161 lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (493)
++|.+++++.+ .+||+.|++.++..++..+..++.+|++++..+ + ++++ + +.. +
T Consensus 153 ~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~-----~-----~~~---~------ 206 (417)
T 2cfq_A 153 LGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSSAT-V-----ANAV-----G-----ANH---S------ 206 (417)
T ss_dssp HHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSC-S-----SSSS-----S-----SCC---C------
T ss_pred HHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcccccccc-c-----cccc-----c-----ccc---c------
Confidence 99999999987 489999988776544443444444433211100 0 0000 0 000 0
Q ss_pred hhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeec
Q 011112 241 KKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTE 320 (493)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 320 (493)
+ . +.+ +.++.+|+|+++...+..+.............+.|+.+
T Consensus 207 ----~-------~----------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (417)
T 2cfq_A 207 ----A-------F----------------------SLK----LALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTS 249 (417)
T ss_dssp ----C-------C----------------------CHH----HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----c-------c----------------------cHH----HHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 111 23345677776654433222111111111112334344
Q ss_pred cCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehh
Q 011112 321 ILNL---EASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGS 397 (493)
Q Consensus 321 ~~g~---s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~ 397 (493)
.++. +....|+......++.+++.++.+++.||+++|+.+..+.++..+..+. .... ++.+..+...
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~-~~~~---------~~~~~~~~~~ 319 (417)
T 2cfq_A 250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIG-SSFA---------TSALEVVILK 319 (417)
T ss_dssp TSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-HTTC---------CSHHHHHHHT
T ss_pred HHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH-HHHh---------ccHHHHHHHH
Confidence 3332 2345566666777788888999999999999999888777666554221 1111 1111111111
Q ss_pred HHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHH-HHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhh
Q 011112 398 ALVDAVNQFKFMPFLILSGQLCPPGIEGTLFAL-FMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFI 476 (493)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl-~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 476 (493)
.+..........+...+..|..|++.||+++++ +++..++|+.++|.++|.+.+.+|+ ...+.+.+++.++
T Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~--------~~~f~~~~~~~l~ 391 (417)
T 2cfq_A 320 TLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF--------QGAYLVLGLVALG 391 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCc--------HHHHHHHHHHHHH
Confidence 122222222233446789999999999999999 4788889999999999999887543 2234444555555
Q ss_pred hhhhh-hcccC
Q 011112 477 PIAFL-FLIPK 486 (493)
Q Consensus 477 ~~~~~-~~l~~ 486 (493)
+.+.. .+.||
T Consensus 392 ~~~~~~~~~~~ 402 (417)
T 2cfq_A 392 FTLISVFTLSG 402 (417)
T ss_dssp HHHHHTTSSCC
T ss_pred HHHHHHhhhcC
Confidence 54433 34453
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.86 E-value=7.5e-21 Score=200.39 Aligned_cols=173 Identities=15% Similarity=0.050 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhC------CCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHH
Q 011112 12 FLWLICLIYFTQGFR-SFVWTAVSYQLKDKLK------FSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYL 83 (493)
Q Consensus 12 ~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g------~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~i 83 (493)
..+.+....++..+. +.....+++++++++| .|..+.|+..+++.++..+ .+++|+++||+ .+||+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~----~g~r~~~ 88 (524)
T 2xut_A 13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRF----FGKYNTI 88 (524)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTS----SCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcchHHH
Confidence 334455566665554 3455667778888899 9999999999999988877 78999999994 1678888
Q ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHH---HHHHHHHHHH
Q 011112 84 VISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSL---SWLAMAFGGI 160 (493)
Q Consensus 84 i~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~---~~~~~~~G~~ 160 (493)
+.+.++..++.+++++.+ .+.+.+++.|++.|++.+...+...+++.|..+ +++|+++.+. .....++|..
T Consensus 89 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~g~~ 162 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFE---HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFD---QSNKSLAQKAFDMFYFTINFGSF 162 (524)
T ss_dssp HHHHHHHHHHHHHHHHTS---SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCS---TTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHhccccchhHHHHHHHHcC---ccchHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777764 146678899999999999999999999999885 4777665555 8899999999
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhh
Q 011112 161 CGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCG 194 (493)
Q Consensus 161 lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~~ 194 (493)
+|+.+++++.++.|||+.|++.+++.++..+..+
T Consensus 163 ~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 163 FASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999989999999988876555444433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.32 E-value=4.1e-11 Score=122.77 Aligned_cols=181 Identities=14% Similarity=0.085 Sum_probs=133.8
Q ss_pred hchhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHH
Q 011112 8 FGVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVI 85 (493)
Q Consensus 8 ~~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~ 85 (493)
++.+.++.+.+..++..+. .......+.++++++|.+..+.+...+...++..+ .+++|+++||+. .+||+.+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~---~~~~~~~~~ 325 (451)
T 1pw4_A 249 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF---RGNRGATGV 325 (451)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---TTCHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCchhHHH
Confidence 4556666566666665554 34556667787777999999999988888777766 789999999941 145666666
Q ss_pred HHHHHH-HHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHH-HHHHHH
Q 011112 86 STVLSL-VPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAF-GGICGS 163 (493)
Q Consensus 86 ~~~l~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~-G~~lg~ 163 (493)
+..+.. ++.+.+.+.++ .+.+...+..++.+++.+...+...+++.|.. |+++||++.|+......+ |..+++
T Consensus 326 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~g~~~~~ 400 (451)
T 1pw4_A 326 FFMTLVTIATIVYWMNPA--GNPTVDMICMIVIGFLIYGPVMLIGLHALELA---PKKAAGTAAGFTGLFGYLGGSVAAS 400 (451)
T ss_dssp HHHHHHHHHHHHTTSCCT--TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS---CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc--cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHh---chhhhhhHHHHHHHHHHHHHHHHHH
Confidence 655554 55555555432 23445566667778877777777788888887 458899999999999999 999999
Q ss_pred HHHHHhhccccHHHHHHHHHHHHHHHHHHhhcc
Q 011112 164 LLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLV 196 (493)
Q Consensus 164 ~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~~~~ 196 (493)
.+.|++.++.||+..|++.+++.++..+..++.
T Consensus 401 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 401 AIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887766665544433
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.11 E-value=1.6e-09 Score=110.53 Aligned_cols=167 Identities=10% Similarity=-0.017 Sum_probs=120.5
Q ss_pred hhchhHHHHHHHHHHHHhHH-HhHHHHHHHH-HHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHH
Q 011112 7 VFGVSFLWLICLIYFTQGFR-SFVWTAVSYQ-LKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYL 83 (493)
Q Consensus 7 ~~~~~~~~~~~~~~f~~g~~-~~~~~~~~~~-l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~i 83 (493)
.++.+.++...+..++.... .......+.+ +++.+|.+..+.+...++..+...+ .++.|+++||+ +||+.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-----~~~~~~ 328 (438)
T 3o7q_A 254 LARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-----APHKVL 328 (438)
T ss_dssp HTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHH
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHH
Confidence 45556666555555554443 3445666777 7887899999999988888777766 78999999995 577787
Q ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHH
Q 011112 84 VISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGS 163 (493)
Q Consensus 84 i~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~ 163 (493)
..+.++..++.+.+.+.++ .+. .+..++.+++.+...+...++..|..+ ++++...++.. ...+|..++|
T Consensus 329 ~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~g~~~~~ 398 (438)
T 3o7q_A 329 AAYALIAMALCLISAFAGG----HVG-LIALTLCSAFMSIQYPTIFSLGIKNLG----QDTKYGSSFIV-MTIIGGGIVT 398 (438)
T ss_dssp HHHHHHHHHHHHHHHHCCH----HHH-HHHHHHHHHHHTTHHHHHHHHHHSSCG----GGHHHHHHHHH-HTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC----cHH-HHHHHHHHHHHHHHHHHHHHHHHhhcc----ccccchhhHHH-HHHHHHHHHH
Confidence 7888777777776666542 222 333456677777777777777777664 33777777766 5679999999
Q ss_pred HHHHHhhcccc-HHHHHHHHHHHHHH
Q 011112 164 LLGGYALTNIE-IDRIFLLFTVLPAI 188 (493)
Q Consensus 164 ~i~g~l~~~~g-w~~~f~~~~~~~~l 188 (493)
.+.|++.++.| ++..|++.+++.++
T Consensus 399 ~~~g~l~~~~g~~~~~~~~~~~~~~~ 424 (438)
T 3o7q_A 399 PVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_dssp HHHHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999988 99998876654333
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.10 E-value=1.5e-09 Score=110.77 Aligned_cols=158 Identities=11% Similarity=0.055 Sum_probs=107.3
Q ss_pred HHHHHHHHhhhCCC---HhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhh
Q 011112 31 TAVSYQLKDKLKFS---PSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSS 106 (493)
Q Consensus 31 ~~~~~~l~~~~g~s---~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~ 106 (493)
...+.++++.++.+ ..+.+...++..+...+ .++.|+++||+ +||+.++.+..+..++.+.+++.+ +
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~l~~~~~~~~~~~~~~~~~~----~ 311 (417)
T 2cfq_A 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-----GGKNALLLAGTIMSVRIIGSSFAT----S 311 (417)
T ss_dssp HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHTTCC----S
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cHHHHHHHHHHHHHHHHHHHHHhc----c
Confidence 33555666655422 33445555555444444 67899999996 566677777777766666655543 2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHH-HHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Q 011112 107 TWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSL-SWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVL 185 (493)
Q Consensus 107 ~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~-~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~ 185 (493)
.+.+++..++.+++.+...+...+++.|.. |++.||...+. +.....+|..+||.++|++.++.|++..|.+.+++
T Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~ 388 (417)
T 2cfq_A 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQF---EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLV 388 (417)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHH
Confidence 334455555556665555555667888877 45889999998 47788899999999999999988999999888877
Q ss_pred HHHHHHHh-hcccccc
Q 011112 186 PAIQLLSC-GLVKENR 200 (493)
Q Consensus 186 ~~l~~i~~-~~~~e~~ 200 (493)
.++..+.. ++.||++
T Consensus 389 ~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 389 ALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHTTSSCCSC
T ss_pred HHHHHHHHHhhhcCCC
Confidence 66665543 3455543
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.86 E-value=1.3e-08 Score=105.57 Aligned_cols=133 Identities=13% Similarity=0.083 Sum_probs=99.0
Q ss_pred ceeeeeecc-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHhhhhhhheeccccccC
Q 011112 313 VMFYYQTEI-----LNLEASFLGTARVVGWVGLMLGTYTYNGYLKR-LKLRRILLLTQVGLSILSFLDIVLVSRMNLTVG 386 (493)
Q Consensus 313 ~~~~~~~~~-----~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~-~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g 386 (493)
..+.|..+. +|+|..+.|++.....++..++.++.|++.|| +|+|+.+..+.++..++.+.. ...
T Consensus 35 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~-~~~-------- 105 (491)
T 4aps_A 35 ILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVL-ALP-------- 105 (491)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH-HSC--------
T ss_pred HHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH-HHh--------
Confidence 344555555 89999999999888999999999999999999 899999999988877764332 111
Q ss_pred ccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCc--hHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcC
Q 011112 387 ISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGI--EGTLFALFMSISNFGSTVGSFFGAGLASSLSI 455 (493)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~ 455 (493)
++....+....+.....+....+..+++.|..|+++ |++++++++...++|..++|.+++.+.+..|+
T Consensus 106 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 175 (491)
T 4aps_A 106 -FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGY 175 (491)
T ss_dssp -CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred -hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 122211112223333333344455788999999988 88899999999999999999999999987653
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.75 E-value=2.7e-08 Score=104.13 Aligned_cols=133 Identities=11% Similarity=-0.030 Sum_probs=95.7
Q ss_pred ceeeeeeccCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhhhhhhheecccccc
Q 011112 313 VMFYYQTEILN------LEASFLGTARVVGWVGLMLGTYTYNGYLKRL-KLRRILLLTQVGLSILSFLDIVLVSRMNLTV 385 (493)
Q Consensus 313 ~~~~~~~~~~g------~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~-~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 385 (493)
..+.|+.+++| +|..+.|++.....++..++.++.|++.||+ |+|+.+..+.++..++.+... ...
T Consensus 34 ~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~-~~~------ 106 (524)
T 2xut_A 34 ILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLA-IFE------ 106 (524)
T ss_dssp HHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHH-HTS------
T ss_pred HHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-Hhc------
Confidence 34556666788 9999999998888999999999999999999 999999988877776543321 110
Q ss_pred CccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHH---HHHHHhhhhhhhHhHHHHhHHhhc
Q 011112 386 GISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFAL---FMSISNFGSTVGSFFGAGLASSLS 454 (493)
Q Consensus 386 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl---~~~~~~lg~~~~~~i~g~l~~~~g 454 (493)
.+.+..+....+.....+....+..+++.+..|+++|++..+. .+...++|..+++.+++.+.+..|
T Consensus 107 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 176 (524)
T 2xut_A 107 --HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG 176 (524)
T ss_dssp --SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC
T ss_pred --ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 0112111122233333344445557889999999999765555 888999999999999998887654
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.69 E-value=1e-08 Score=102.42 Aligned_cols=152 Identities=11% Similarity=0.004 Sum_probs=107.0
Q ss_pred eccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhH
Q 011112 319 TEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSA 398 (493)
Q Consensus 319 ~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~ 398 (493)
.+++|.|+.+.|+......++..++.++.|++.||+|+|+.+..+.++..++.+... .. ++.+..+....
T Consensus 27 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~---------~~~~~l~~~~~ 96 (375)
T 2gfp_A 27 ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV-TT---------SSLTVLIAASA 96 (375)
T ss_dssp HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-Hh---------ccHHHHHHHHH
Confidence 456899999999998889999999999999999999999999988888777643322 11 11111111222
Q ss_pred HHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhh
Q 011112 399 LVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPI 478 (493)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 478 (493)
+.............+++.|..|+++|++.+++.+...++|..+++.+++.+.+.+|+ ...+.+.+++.++..
T Consensus 97 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 97 MQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW--------RACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH--------HHHHHHHHHHHHHHH
Confidence 333333333444567899999999999999999999999999999999998876543 234444444444443
Q ss_pred h-hhhcccCCC
Q 011112 479 A-FLFLIPKGA 488 (493)
Q Consensus 479 ~-~~~~l~~~~ 488 (493)
+ ....+||.+
T Consensus 169 ~~~~~~~~~~~ 179 (375)
T 2gfp_A 169 FSMARWMPETR 179 (375)
T ss_dssp CCCCCSSCCCS
T ss_pred HHHHHHCcccC
Confidence 3 334666543
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.67 E-value=7.8e-07 Score=91.96 Aligned_cols=159 Identities=13% Similarity=0.049 Sum_probs=101.1
Q ss_pred HHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccc--hhhHHHHH
Q 011112 35 YQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFF--RSSTWHLI 111 (493)
Q Consensus 35 ~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~--~~~~~~l~ 111 (493)
+.+.++.+.+.........+..+...+ .++.+.++||+ +||+.++.+.....++.+.++..... ........
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-----Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 375 (491)
T 4gc0_A 301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-----GRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLS 375 (491)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-----cCcchhccchHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 444556787777666554444444444 67889999996 57777777777666665555433211 11111122
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhc------cccHHHHHHHHHHH
Q 011112 112 VLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALT------NIEIDRIFLLFTVL 185 (493)
Q Consensus 112 ~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~------~~gw~~~f~~~~~~ 185 (493)
...+..+++.+. .+....+.+|+. |.+.|++..|+......+|..+++.+...+.+ ..++.+.|++.+++
T Consensus 376 ~~~~~~~~~~~~-~~~~~~~~~E~f---Pt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~ 451 (491)
T 4gc0_A 376 MLFYVAAFAMSW-GPVCWVLLSEIF---PNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM 451 (491)
T ss_dssp HHHHHHHHHTTT-THHHHHHHHHSS---CTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhHH-HHHHHHHHHHhC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 222223333332 244567888988 55899999999999999999888877665543 34556678887777
Q ss_pred HHHHHHH-hhcccccccc
Q 011112 186 PAIQLLS-CGLVKENRVS 202 (493)
Q Consensus 186 ~~l~~i~-~~~~~e~~~~ 202 (493)
.++..+. ++++||++..
T Consensus 452 ~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 452 GVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHheecCCCCC
Confidence 7776654 4679998754
Done!