Query 011113
Match_columns 493
No_of_seqs 535 out of 3321
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 08:15:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11634 ATP-dependent RNA hel 100.0 3.7E-52 8E-57 447.5 45.5 344 1-354 161-547 (629)
2 KOG0331 ATP-dependent RNA heli 100.0 4.7E-44 1E-48 364.6 19.4 206 1-206 251-460 (519)
3 KOG0328 Predicted ATP-dependen 100.0 5E-42 1.1E-46 316.9 18.1 213 1-216 181-395 (400)
4 KOG0342 ATP-dependent RNA heli 100.0 2.6E-41 5.7E-46 333.7 21.9 270 1-274 242-521 (543)
5 COG0513 SrmB Superfamily II DN 100.0 3.4E-41 7.3E-46 356.2 23.2 219 1-220 186-408 (513)
6 KOG0330 ATP-dependent RNA heli 100.0 4.2E-41 9.2E-46 323.3 19.0 213 1-216 216-429 (476)
7 KOG0333 U5 snRNP-like RNA heli 100.0 5.7E-40 1.2E-44 325.5 18.9 203 1-206 408-636 (673)
8 PRK11776 ATP-dependent RNA hel 100.0 5.6E-38 1.2E-42 330.3 29.4 285 1-352 159-444 (460)
9 KOG0343 RNA Helicase [RNA proc 100.0 1.9E-38 4.2E-43 316.1 20.9 273 1-275 227-510 (758)
10 KOG0336 ATP-dependent RNA heli 100.0 4E-38 8.7E-43 303.8 16.7 203 1-204 379-582 (629)
11 KOG0345 ATP-dependent RNA heli 100.0 7.3E-38 1.6E-42 307.4 18.3 219 1-220 169-390 (567)
12 KOG0326 ATP-dependent RNA heli 100.0 6E-37 1.3E-41 287.6 15.2 211 1-215 239-450 (459)
13 KOG0340 ATP-dependent RNA heli 100.0 2.8E-36 6.1E-41 287.0 17.7 217 1-217 165-384 (442)
14 KOG0338 ATP-dependent RNA heli 100.0 5.8E-36 1.3E-40 296.1 15.3 202 1-205 339-544 (691)
15 KOG0341 DEAD-box protein abstr 100.0 2.2E-36 4.8E-41 290.0 9.9 192 1-196 338-530 (610)
16 KOG0327 Translation initiation 100.0 1.1E-34 2.4E-39 279.9 18.3 211 1-216 181-392 (397)
17 PTZ00110 helicase; Provisional 100.0 4.3E-34 9.4E-39 304.8 23.6 206 1-207 289-497 (545)
18 PRK10590 ATP-dependent RNA hel 100.0 6.6E-34 1.4E-38 298.5 23.2 210 1-213 161-371 (456)
19 PRK04837 ATP-dependent RNA hel 100.0 7.2E-34 1.6E-38 296.0 21.8 211 1-214 169-382 (423)
20 PRK04537 ATP-dependent RNA hel 100.0 1.3E-33 2.7E-38 302.3 23.5 209 1-212 171-382 (572)
21 KOG0332 ATP-dependent RNA heli 100.0 7.1E-34 1.5E-38 272.1 18.6 215 4-221 248-471 (477)
22 KOG0335 ATP-dependent RNA heli 100.0 2.6E-34 5.6E-39 288.7 16.3 201 1-203 238-453 (482)
23 KOG0346 RNA helicase [RNA proc 100.0 1E-32 2.2E-37 269.0 18.9 206 1-207 182-423 (569)
24 PLN00206 DEAD-box ATP-dependen 100.0 3.5E-32 7.7E-37 289.1 22.8 204 1-207 282-488 (518)
25 PRK11192 ATP-dependent RNA hel 100.0 6.6E-32 1.4E-36 282.3 23.5 208 1-211 159-369 (434)
26 KOG0339 ATP-dependent RNA heli 100.0 7.9E-32 1.7E-36 266.5 17.5 197 1-199 382-580 (731)
27 PRK01297 ATP-dependent RNA hel 100.0 4.9E-31 1.1E-35 278.5 24.2 208 1-211 249-459 (475)
28 KOG0348 ATP-dependent RNA heli 100.0 1.3E-31 2.7E-36 266.8 16.2 207 1-207 299-567 (708)
29 PTZ00424 helicase 45; Provisio 100.0 2.5E-30 5.4E-35 267.9 22.1 213 1-216 182-396 (401)
30 KOG0347 RNA helicase [RNA proc 100.0 1.4E-31 3E-36 267.2 8.6 224 1-228 352-604 (731)
31 KOG0334 RNA helicase [RNA proc 100.0 2.4E-30 5.1E-35 276.9 17.3 204 1-206 527-732 (997)
32 TIGR03817 DECH_helic helicase/ 100.0 1.9E-28 4.2E-33 268.9 25.4 240 6-253 173-447 (742)
33 KOG0337 ATP-dependent RNA heli 100.0 1.3E-29 2.9E-34 246.2 12.2 212 1-214 176-388 (529)
34 KOG4284 DEAD box protein [Tran 100.0 2.7E-28 5.9E-33 247.3 16.2 196 4-202 183-388 (980)
35 PLN03137 ATP-dependent DNA hel 100.0 2.9E-27 6.2E-32 259.4 24.4 200 1-204 593-797 (1195)
36 TIGR00614 recQ_fam ATP-depende 100.0 4.8E-27 1E-31 247.4 23.6 196 2-204 140-343 (470)
37 KOG0344 ATP-dependent RNA heli 99.9 4.2E-27 9.2E-32 238.3 15.9 202 2-206 301-507 (593)
38 PHA02653 RNA helicase NPH-II; 99.9 8.8E-26 1.9E-30 242.7 23.4 181 8-196 308-516 (675)
39 TIGR01970 DEAH_box_HrpB ATP-de 99.9 3.2E-26 7E-31 251.5 19.8 186 1-197 126-339 (819)
40 PRK11057 ATP-dependent DNA hel 99.9 8.8E-26 1.9E-30 244.2 22.5 189 6-203 158-352 (607)
41 PRK11664 ATP-dependent RNA hel 99.9 1.8E-25 3.8E-30 246.2 18.7 230 11-270 140-396 (812)
42 TIGR02621 cas3_GSU0051 CRISPR- 99.9 3.7E-25 8E-30 239.5 19.3 183 2-192 182-389 (844)
43 TIGR01389 recQ ATP-dependent D 99.9 4.2E-24 9.1E-29 231.4 21.9 190 5-203 145-340 (591)
44 KOG0350 DEAD-box ATP-dependent 99.9 2.3E-24 5.1E-29 213.8 15.9 191 17-208 357-554 (620)
45 PRK09751 putative ATP-dependen 99.9 2.1E-23 4.5E-28 237.8 24.3 253 6-269 145-461 (1490)
46 COG0514 RecQ Superfamily II DN 99.9 6.9E-23 1.5E-27 213.5 21.1 192 6-205 150-348 (590)
47 TIGR00580 mfd transcription-re 99.9 7.4E-23 1.6E-27 227.3 22.4 192 7-205 586-787 (926)
48 PRK11131 ATP-dependent RNA hel 99.9 5.8E-23 1.3E-27 230.5 21.3 185 1-197 199-414 (1294)
49 PRK13767 ATP-dependent helicas 99.9 4.4E-22 9.4E-27 223.0 25.0 144 83-226 279-433 (876)
50 PRK10689 transcription-repair 99.9 3.5E-22 7.6E-27 226.5 22.2 189 11-206 739-937 (1147)
51 TIGR01587 cas3_core CRISPR-ass 99.9 1.7E-22 3.6E-27 206.2 17.5 179 10-194 144-336 (358)
52 TIGR01967 DEAH_box_HrpA ATP-de 99.9 9.5E-22 2.1E-26 221.5 21.1 239 1-270 192-461 (1283)
53 PRK02362 ski2-like helicase; P 99.9 2.7E-21 5.9E-26 214.3 21.6 190 2-195 150-398 (737)
54 PRK12898 secA preprotein trans 99.9 1.6E-21 3.5E-26 207.0 18.6 169 22-196 410-588 (656)
55 KOG0329 ATP-dependent RNA heli 99.9 8.1E-23 1.8E-27 187.2 5.8 169 4-208 201-370 (387)
56 PRK10917 ATP-dependent DNA hel 99.9 1.3E-20 2.8E-25 206.3 21.9 177 10-192 399-587 (681)
57 KOG0349 Putative DEAD-box RNA 99.9 1.5E-21 3.3E-26 190.5 13.0 189 1-192 375-613 (725)
58 PRK04914 ATP-dependent helicas 99.9 6.8E-21 1.5E-25 211.0 19.6 163 73-236 479-647 (956)
59 PRK00254 ski2-like helicase; P 99.9 1.2E-20 2.6E-25 208.6 21.6 205 2-212 151-404 (720)
60 TIGR00643 recG ATP-dependent D 99.8 5.7E-20 1.2E-24 199.9 20.9 167 20-192 386-564 (630)
61 PRK05298 excinuclease ABC subu 99.8 1.3E-18 2.7E-23 189.2 24.2 139 75-214 433-586 (652)
62 PRK09200 preprotein translocas 99.8 6.3E-19 1.4E-23 191.1 21.1 168 22-196 365-543 (790)
63 PRK09401 reverse gyrase; Revie 99.8 1.4E-19 3.1E-24 205.7 16.5 163 4-180 227-430 (1176)
64 PRK01172 ski2-like helicase; P 99.8 6.1E-19 1.3E-23 194.0 19.4 187 2-194 148-378 (674)
65 TIGR00631 uvrb excinuclease AB 99.8 3.1E-18 6.8E-23 185.0 19.7 129 76-205 430-564 (655)
66 KOG0351 ATP-dependent DNA heli 99.8 2.4E-18 5.1E-23 189.4 18.7 195 6-206 404-604 (941)
67 TIGR03158 cas3_cyano CRISPR-as 99.8 4.5E-18 9.8E-23 172.9 18.4 157 12-179 173-357 (357)
68 PRK14701 reverse gyrase; Provi 99.8 1.2E-18 2.5E-23 202.5 14.9 187 4-202 226-464 (1638)
69 TIGR03714 secA2 accessory Sec 99.8 8.8E-18 1.9E-22 180.7 20.4 167 22-196 361-539 (762)
70 COG1201 Lhr Lhr-like helicases 99.8 3.5E-17 7.6E-22 176.9 24.6 199 10-217 174-387 (814)
71 PHA02558 uvsW UvsW helicase; P 99.8 1E-17 2.3E-22 177.7 19.5 112 74-185 329-443 (501)
72 COG1111 MPH1 ERCC4-like helica 99.8 4E-18 8.7E-23 171.0 14.2 121 73-194 348-481 (542)
73 cd00079 HELICc Helicase superf 99.8 9.1E-18 2E-22 145.3 13.5 127 63-190 3-131 (131)
74 TIGR00963 secA preprotein tran 99.8 9.4E-18 2E-22 179.4 15.8 168 22-196 342-519 (745)
75 COG1643 HrpA HrpA-like helicas 99.7 4.1E-17 8.8E-22 177.7 17.8 232 10-269 185-444 (845)
76 COG1202 Superfamily II helicas 99.7 1.8E-17 3.9E-22 167.5 12.8 175 14-195 366-554 (830)
77 KOG0922 DEAH-box RNA helicase 99.7 3.7E-17 8E-22 169.0 15.1 231 11-270 187-447 (674)
78 TIGR01054 rgy reverse gyrase. 99.7 5.9E-17 1.3E-21 184.8 18.2 160 16-203 260-431 (1171)
79 PRK12906 secA preprotein trans 99.7 1E-16 2.2E-21 173.0 18.8 167 22-195 377-554 (796)
80 KOG0352 ATP-dependent DNA heli 99.7 1.6E-17 3.4E-22 162.5 7.7 180 19-204 175-372 (641)
81 KOG0921 Dosage compensation co 99.7 7.7E-16 1.7E-20 162.1 20.2 105 88-193 643-773 (1282)
82 KOG0923 mRNA splicing factor A 99.7 1.7E-16 3.7E-21 162.7 13.5 250 12-289 403-683 (902)
83 PRK12900 secA preprotein trans 99.7 6.4E-16 1.4E-20 167.9 18.2 167 23-196 536-713 (1025)
84 PRK09694 helicase Cas3; Provis 99.7 1.6E-15 3.4E-20 167.6 21.4 107 74-183 546-664 (878)
85 PF00271 Helicase_C: Helicase 99.7 5E-17 1.1E-21 128.0 6.9 76 107-182 2-78 (78)
86 TIGR00603 rad25 DNA repair hel 99.7 1E-15 2.2E-20 164.9 18.7 119 73-195 480-608 (732)
87 PRK13766 Hef nuclease; Provisi 99.7 1.6E-15 3.5E-20 169.8 17.6 121 72-193 346-478 (773)
88 KOG0354 DEAD-box like helicase 99.7 1.5E-15 3.3E-20 160.7 16.0 123 72-196 394-531 (746)
89 COG1200 RecG RecG-like helicas 99.6 3.6E-14 7.8E-19 148.4 22.7 177 13-195 403-592 (677)
90 KOG0920 ATP-dependent RNA heli 99.6 3.3E-14 7.1E-19 154.7 19.1 245 4-268 303-602 (924)
91 COG0556 UvrB Helicase subunit 99.6 1E-13 2.3E-18 139.8 21.2 168 20-196 386-559 (663)
92 COG1204 Superfamily II helicas 99.6 1.3E-14 2.7E-19 158.9 15.9 173 19-193 179-407 (766)
93 KOG0353 ATP-dependent DNA heli 99.6 1.3E-14 2.9E-19 140.1 12.7 189 6-198 234-471 (695)
94 KOG0924 mRNA splicing factor A 99.6 1.3E-14 2.8E-19 149.3 13.3 223 19-268 499-753 (1042)
95 TIGR00595 priA primosomal prot 99.6 3.3E-14 7.2E-19 150.2 16.7 93 101-193 271-380 (505)
96 PRK05580 primosome assembly pr 99.5 1.4E-13 3.1E-18 150.5 18.3 101 100-200 438-555 (679)
97 COG4098 comFA Superfamily II D 99.5 3.9E-13 8.5E-18 129.0 18.5 179 17-200 230-422 (441)
98 COG1197 Mfd Transcription-repa 99.5 6.8E-13 1.5E-17 146.2 22.5 187 11-204 733-929 (1139)
99 smart00490 HELICc helicase sup 99.5 2.5E-14 5.3E-19 113.0 7.9 80 103-182 2-82 (82)
100 COG1205 Distinct helicase fami 99.5 5.5E-13 1.2E-17 148.0 17.5 194 10-207 222-437 (851)
101 KOG0950 DNA polymerase theta/e 99.5 2.6E-13 5.6E-18 145.3 13.9 117 87-203 459-620 (1008)
102 COG1203 CRISPR-associated heli 99.5 5.7E-13 1.2E-17 147.2 15.6 171 20-193 370-549 (733)
103 KOG0925 mRNA splicing factor A 99.5 2.3E-12 5.1E-17 128.5 17.6 225 11-268 183-443 (699)
104 PRK12904 preprotein translocas 99.4 1.6E-12 3.4E-17 141.4 15.8 167 22-195 367-574 (830)
105 KOG0947 Cytoplasmic exosomal R 99.4 3.1E-12 6.8E-17 136.4 17.5 117 78-194 555-723 (1248)
106 PRK13104 secA preprotein trans 99.4 5.2E-12 1.1E-16 137.6 18.2 166 23-195 382-588 (896)
107 KOG4150 Predicted ATP-dependen 99.4 2.2E-11 4.9E-16 123.4 20.0 212 19-234 450-683 (1034)
108 PRK13107 preprotein translocas 99.4 8.6E-12 1.9E-16 135.6 17.9 167 23-196 387-593 (908)
109 KOG0952 DNA/RNA helicase MER3/ 99.4 2.5E-11 5.4E-16 131.0 19.4 180 18-201 273-498 (1230)
110 KOG0951 RNA helicase BRR2, DEA 99.4 1.4E-11 3E-16 134.6 17.5 179 19-202 473-710 (1674)
111 KOG0926 DEAH-box RNA helicase 99.3 1.6E-11 3.5E-16 128.8 14.3 203 20-242 414-739 (1172)
112 PLN03142 Probable chromatin-re 99.3 3.3E-11 7.2E-16 135.0 15.1 136 71-206 469-613 (1033)
113 KOG0948 Nuclear exosomal RNA h 99.2 4.3E-11 9.3E-16 125.0 11.5 106 88-193 383-538 (1041)
114 COG1061 SSL2 DNA or RNA helica 99.2 5.6E-11 1.2E-15 124.2 12.1 103 77-180 272-375 (442)
115 PF08152 GUCT: GUCT (NUC152) d 99.2 2.2E-11 4.7E-16 99.0 6.3 95 269-370 1-97 (97)
116 PRK11448 hsdR type I restricti 99.2 3.2E-10 7E-15 129.3 14.8 92 88-181 698-800 (1123)
117 COG4581 Superfamily II RNA hel 99.0 5.3E-09 1.2E-13 115.8 17.4 104 89-192 380-535 (1041)
118 PRK12903 secA preprotein trans 98.9 4.5E-08 9.7E-13 106.2 17.9 167 22-195 363-540 (925)
119 PRK12326 preprotein translocas 98.9 6.2E-08 1.3E-12 103.7 16.6 168 22-195 364-548 (764)
120 COG1198 PriA Primosomal protei 98.8 8E-08 1.7E-12 104.2 16.1 183 18-202 347-611 (730)
121 KOG0953 Mitochondrial RNA heli 98.8 3.2E-08 7E-13 101.0 10.0 128 77-211 347-490 (700)
122 PF00098 zf-CCHC: Zinc knuckle 98.7 5.6E-09 1.2E-13 57.0 1.6 17 477-493 2-18 (18)
123 PRK12899 secA preprotein trans 98.7 1.9E-07 4.1E-12 102.5 13.8 167 22-195 505-682 (970)
124 COG1110 Reverse gyrase [DNA re 98.7 9.9E-07 2.1E-11 96.2 18.7 130 19-164 275-415 (1187)
125 TIGR01407 dinG_rel DnaQ family 98.7 5.1E-07 1.1E-11 102.2 17.3 119 87-206 673-828 (850)
126 PRK13103 secA preprotein trans 98.7 4E-07 8.6E-12 99.9 14.9 168 22-195 386-592 (913)
127 PRK12901 secA preprotein trans 98.6 5.9E-07 1.3E-11 99.1 16.0 165 24-195 567-742 (1112)
128 KOG0384 Chromodomain-helicase 98.6 2.6E-07 5.7E-12 102.0 11.4 128 74-201 684-820 (1373)
129 PF03880 DbpA: DbpA RNA bindin 98.6 6.8E-08 1.5E-12 74.8 4.8 61 287-354 1-61 (74)
130 KOG0385 Chromatin remodeling c 98.6 5.7E-07 1.2E-11 95.1 12.2 138 70-207 468-614 (971)
131 PF06862 DUF1253: Protein of u 98.5 5.7E-06 1.2E-10 85.0 19.1 181 21-202 216-423 (442)
132 KOG0387 Transcription-coupled 98.4 3.4E-06 7.3E-11 89.8 13.7 122 72-193 529-657 (923)
133 CHL00122 secA preprotein trans 98.4 1.2E-05 2.7E-10 88.0 18.0 125 22-153 361-490 (870)
134 KOG0390 DNA repair protein, SN 98.3 6.7E-06 1.5E-10 89.2 13.3 119 72-190 577-701 (776)
135 KOG0392 SNF2 family DNA-depend 98.2 1.1E-05 2.3E-10 89.5 11.9 122 72-193 1309-1453(1549)
136 KOG0391 SNF2 family DNA-depend 98.2 1.4E-05 2.9E-10 88.0 12.4 122 72-193 1259-1386(1958)
137 PRK08074 bifunctional ATP-depe 98.2 4.4E-05 9.5E-10 87.2 16.4 79 87-165 751-834 (928)
138 PRK12902 secA preprotein trans 98.1 8.8E-05 1.9E-09 81.5 17.0 126 22-154 376-506 (939)
139 TIGR02562 cas3_yersinia CRISPR 98.1 0.00017 3.6E-09 80.6 18.6 89 92-183 760-881 (1110)
140 PRK10590 ATP-dependent RNA hel 98.1 0.0003 6.6E-09 74.2 20.2 68 90-161 77-155 (456)
141 KOG1000 Chromatin remodeling p 98.1 1.7E-05 3.6E-10 80.5 9.2 104 86-189 490-596 (689)
142 KOG1123 RNA polymerase II tran 98.1 3.4E-05 7.5E-10 78.3 11.4 107 72-182 526-635 (776)
143 KOG0949 Predicted helicase, DE 98.1 2.3E-05 4.9E-10 85.3 10.7 82 114-195 965-1049(1330)
144 KOG0389 SNF2 family DNA-depend 98.0 5.9E-05 1.3E-09 80.6 12.4 123 73-195 761-889 (941)
145 PRK07246 bifunctional ATP-depe 98.0 7.2E-05 1.6E-09 84.0 13.5 77 86-165 645-724 (820)
146 KOG0331 ATP-dependent RNA heli 98.0 0.00025 5.5E-09 74.0 16.3 219 88-321 165-424 (519)
147 COG1199 DinG Rad3-related DNA 98.0 0.00021 4.5E-09 79.1 16.7 103 87-192 478-615 (654)
148 COG4096 HsdR Type I site-speci 97.9 4.2E-05 9E-10 82.5 10.0 92 88-181 426-525 (875)
149 TIGR00348 hsdR type I site-spe 97.9 0.00012 2.6E-09 80.6 13.9 93 88-181 514-634 (667)
150 COG0553 HepA Superfamily II DN 97.9 7.7E-05 1.7E-09 85.0 12.6 118 73-190 692-816 (866)
151 PRK11747 dinG ATP-dependent DN 97.9 0.00014 3E-09 80.6 12.8 77 86-165 532-615 (697)
152 KOG0386 Chromatin remodeling c 97.8 0.00013 2.9E-09 79.7 11.9 121 71-191 708-833 (1157)
153 KOG0388 SNF2 family DNA-depend 97.8 0.0001 2.3E-09 77.7 9.8 122 72-193 1027-1153(1185)
154 PF13307 Helicase_C_2: Helicas 97.7 0.0001 2.2E-09 66.7 7.7 105 87-193 8-149 (167)
155 KOG1002 Nucleotide excision re 97.7 0.00013 2.9E-09 74.0 8.9 121 73-193 620-748 (791)
156 KOG0921 Dosage compensation co 97.7 0.00028 6.1E-09 76.4 11.5 45 299-350 1056-1100(1282)
157 TIGR03117 cas_csf4 CRISPR-asso 97.6 0.0015 3.3E-08 70.8 14.8 77 87-165 469-560 (636)
158 KOG0339 ATP-dependent RNA heli 97.5 0.0029 6.2E-08 64.9 15.1 107 90-207 298-423 (731)
159 PF13696 zf-CCHC_2: Zinc knuck 97.5 3.1E-05 6.6E-10 48.4 0.7 17 477-493 10-26 (32)
160 COG0653 SecA Preprotein transl 97.5 0.00093 2E-08 73.2 11.9 119 75-195 416-546 (822)
161 KOG3973 Uncharacterized conser 97.4 0.0018 4E-08 62.7 11.3 13 338-350 284-296 (465)
162 KOG0335 ATP-dependent RNA heli 97.4 0.0016 3.4E-08 67.2 11.5 68 89-160 153-231 (482)
163 TIGR00604 rad3 DNA repair heli 97.4 0.0071 1.5E-07 67.4 17.6 79 87-166 521-615 (705)
164 KOG1015 Transcription regulato 97.3 0.0017 3.6E-08 70.9 11.1 119 72-190 1125-1271(1567)
165 COG0513 SrmB Superfamily II DN 97.3 0.00032 7E-09 74.9 5.5 67 91-161 102-180 (513)
166 KOG0951 RNA helicase BRR2, DEA 97.2 0.0075 1.6E-07 68.0 15.1 184 10-202 1279-1502(1674)
167 TIGR00596 rad1 DNA repair prot 97.2 0.001 2.3E-08 74.0 8.6 58 142-202 431-525 (814)
168 PRK04537 ATP-dependent RNA hel 97.2 0.027 5.9E-07 61.1 19.1 68 89-160 85-164 (572)
169 PRK14873 primosome assembly pr 97.0 0.0093 2E-07 65.4 14.0 69 127-202 462-546 (665)
170 KOG0330 ATP-dependent RNA heli 97.0 0.0039 8.4E-08 62.1 9.4 137 75-223 117-273 (476)
171 COG4889 Predicted helicase [Ge 96.9 0.00062 1.3E-08 73.7 3.1 93 89-181 461-572 (1518)
172 PF13917 zf-CCHC_3: Zinc knuck 96.9 0.00055 1.2E-08 46.1 1.5 16 477-492 6-21 (42)
173 smart00343 ZnF_C2HC zinc finge 96.7 0.00061 1.3E-08 41.1 1.0 15 478-492 2-16 (26)
174 KOG3973 Uncharacterized conser 96.6 0.019 4.1E-07 55.9 10.7 11 197-207 165-175 (465)
175 KOG0109 RNA-binding protein LA 96.6 0.00078 1.7E-08 64.0 1.0 16 478-493 163-178 (346)
176 PF14787 zf-CCHC_5: GAG-polypr 96.6 0.0011 2.3E-08 42.4 1.2 16 477-492 4-19 (36)
177 PF13871 Helicase_C_4: Helicas 96.5 0.0086 1.9E-07 58.2 7.9 79 128-206 52-142 (278)
178 KOG0338 ATP-dependent RNA heli 96.4 0.011 2.4E-07 60.8 8.2 119 89-218 253-391 (691)
179 PRK05580 primosome assembly pr 96.3 0.018 3.9E-07 63.8 10.0 89 72-161 173-264 (679)
180 PRK10917 ATP-dependent DNA hel 96.3 0.015 3.3E-07 64.5 9.3 90 72-161 293-389 (681)
181 TIGR00595 priA primosomal prot 96.2 0.022 4.7E-07 60.9 9.5 89 72-161 8-99 (505)
182 PF02399 Herpes_ori_bp: Origin 96.1 0.16 3.4E-06 56.0 15.6 110 75-191 269-385 (824)
183 PRK14873 primosome assembly pr 96.1 0.028 6E-07 61.7 10.0 91 72-163 171-265 (665)
184 KOG4439 RNA polymerase II tran 95.9 0.051 1.1E-06 58.1 10.3 118 73-190 729-852 (901)
185 TIGR00643 recG ATP-dependent D 95.8 0.031 6.8E-07 61.5 8.7 90 72-161 267-363 (630)
186 TIGR00580 mfd transcription-re 95.7 0.044 9.5E-07 62.5 9.4 90 72-161 483-579 (926)
187 COG5082 AIR1 Arginine methyltr 95.6 0.0047 1E-07 55.7 1.0 16 477-492 62-77 (190)
188 KOG0336 ATP-dependent RNA heli 95.4 0.19 4.2E-06 50.6 11.5 70 88-161 294-373 (629)
189 PRK11776 ATP-dependent RNA hel 95.3 0.038 8.2E-07 58.4 6.9 69 89-161 73-153 (460)
190 PTZ00368 universal minicircle 95.0 0.013 2.7E-07 51.9 2.0 18 476-493 130-147 (148)
191 COG5082 AIR1 Arginine methyltr 95.0 0.0093 2E-07 53.8 1.1 17 476-492 98-115 (190)
192 PRK11192 ATP-dependent RNA hel 95.0 0.13 2.8E-06 54.0 9.8 69 89-161 74-153 (434)
193 KOG2340 Uncharacterized conser 94.9 0.1 2.2E-06 54.2 8.3 182 21-202 470-676 (698)
194 PTZ00368 universal minicircle 94.9 0.11 2.3E-06 46.0 7.5 18 476-493 104-121 (148)
195 COG1198 PriA Primosomal protei 94.6 0.12 2.7E-06 56.9 8.4 92 69-161 225-319 (730)
196 smart00492 HELICc3 helicase su 94.6 0.21 4.5E-06 43.8 8.4 47 120-166 30-79 (141)
197 PRK11634 ATP-dependent RNA hel 94.6 0.27 5.7E-06 54.1 11.1 70 88-161 74-155 (629)
198 PRK10689 transcription-repair 94.5 0.12 2.6E-06 60.4 8.8 92 70-161 630-728 (1147)
199 COG1110 Reverse gyrase [DNA re 94.4 0.08 1.7E-06 59.1 6.4 60 87-146 124-190 (1187)
200 KOG0701 dsRNA-specific nucleas 94.1 0.033 7.1E-07 65.5 2.9 94 89-182 293-399 (1606)
201 smart00491 HELICc2 helicase su 94.0 0.22 4.8E-06 43.6 7.4 42 125-166 32-80 (142)
202 PRK14701 reverse gyrase; Provi 93.9 0.19 4E-06 60.7 8.8 60 87-146 121-187 (1638)
203 KOG0341 DEAD-box protein abstr 93.3 1.1 2.4E-05 45.1 11.5 113 88-212 246-384 (610)
204 PF15288 zf-CCHC_6: Zinc knuck 93.2 0.043 9.3E-07 36.3 1.1 16 477-492 3-20 (40)
205 KOG1016 Predicted DNA helicase 92.9 0.33 7.1E-06 52.8 7.7 105 88-192 719-845 (1387)
206 KOG4400 E3 ubiquitin ligase in 92.9 0.042 9E-07 53.5 1.1 18 476-493 144-161 (261)
207 PF14392 zf-CCHC_4: Zinc knuck 92.9 0.037 8.1E-07 38.9 0.5 16 478-493 34-49 (49)
208 KOG0334 RNA helicase [RNA proc 92.5 0.64 1.4E-05 52.3 9.6 108 89-209 439-570 (997)
209 KOG0347 RNA helicase [RNA proc 92.4 0.22 4.9E-06 52.1 5.5 52 90-145 265-321 (731)
210 TIGR01054 rgy reverse gyrase. 92.2 0.29 6.3E-06 57.4 7.0 60 87-146 120-187 (1171)
211 COG1200 RecG RecG-like helicas 91.6 0.69 1.5E-05 50.0 8.3 86 76-161 299-390 (677)
212 COG5222 Uncharacterized conser 91.4 0.075 1.6E-06 50.8 0.8 17 477-493 178-194 (427)
213 COG1197 Mfd Transcription-repa 91.2 0.8 1.7E-05 52.5 8.7 89 73-161 627-722 (1139)
214 TIGR00614 recQ_fam ATP-depende 90.5 0.89 1.9E-05 48.3 8.0 60 87-146 50-110 (470)
215 COG1111 MPH1 ERCC4-like helica 90.3 3.6 7.8E-05 43.0 11.6 69 88-161 58-137 (542)
216 cd00268 DEADc DEAD-box helicas 90.1 2.7 5.9E-05 38.6 10.1 69 88-160 69-148 (203)
217 KOG1001 Helicase-like transcri 89.1 0.13 2.9E-06 56.4 0.4 118 72-189 521-643 (674)
218 KOG0329 ATP-dependent RNA heli 88.0 2.3 5.1E-05 40.4 7.8 68 90-161 112-191 (387)
219 TIGR01389 recQ ATP-dependent D 88.0 1.9 4E-05 47.3 8.5 60 87-146 52-112 (591)
220 PRK13766 Hef nuclease; Provisi 87.6 11 0.00024 42.6 14.7 70 87-161 57-137 (773)
221 PRK04837 ATP-dependent RNA hel 87.5 1.9 4.1E-05 45.0 7.8 69 89-161 84-163 (423)
222 PTZ00110 helicase; Provisional 87.4 1.5 3.3E-05 47.4 7.2 69 89-161 204-283 (545)
223 KOG0107 Alternative splicing f 87.3 0.58 1.3E-05 41.7 3.2 16 478-493 103-118 (195)
224 PRK11057 ATP-dependent DNA hel 87.2 2.7 5.9E-05 46.1 9.2 59 87-145 64-123 (607)
225 PRK09401 reverse gyrase; Revie 87.0 1.8 3.9E-05 51.0 7.9 73 87-160 122-206 (1176)
226 PF00270 DEAD: DEAD/DEAH box h 86.3 5.4 0.00012 35.2 9.2 69 89-161 45-125 (169)
227 KOG0333 U5 snRNP-like RNA heli 85.7 2.1 4.5E-05 44.9 6.6 55 87-145 321-380 (673)
228 PLN03137 ATP-dependent DNA hel 85.6 2.9 6.2E-05 48.5 8.3 59 87-145 499-560 (1195)
229 KOG1513 Nuclear helicase MOP-3 85.4 1.2 2.5E-05 48.9 4.8 53 130-182 850-910 (1300)
230 COG4907 Predicted membrane pro 85.2 0.8 1.7E-05 46.8 3.3 44 304-347 488-531 (595)
231 PRK01297 ATP-dependent RNA hel 84.5 4.6 9.9E-05 42.9 9.0 70 89-161 163-243 (475)
232 PF10593 Z1: Z1 domain; Inter 83.5 11 0.00024 36.0 10.3 87 111-202 110-201 (239)
233 PF12683 DUF3798: Protein of u 82.6 3.5 7.5E-05 39.7 6.3 155 22-217 4-173 (275)
234 PRK09751 putative ATP-dependen 82.0 4 8.6E-05 49.0 7.8 70 88-161 37-130 (1490)
235 KOG3262 H/ACA small nucleolar 81.1 1.6 3.5E-05 39.1 3.2 7 320-326 89-95 (215)
236 KOG0345 ATP-dependent RNA heli 81.0 6.1 0.00013 41.0 7.6 107 90-206 81-209 (567)
237 smart00487 DEXDc DEAD-like hel 80.6 3.1 6.7E-05 37.2 5.2 46 5-50 145-190 (201)
238 TIGR03817 DECH_helic helicase/ 78.8 6.5 0.00014 44.2 8.0 70 87-161 80-163 (742)
239 PRK13767 ATP-dependent helicas 78.6 6.7 0.00014 45.1 8.1 69 89-161 85-178 (876)
240 TIGR01659 sex-lethal sex-letha 76.2 60 0.0013 32.9 13.3 58 287-353 194-256 (346)
241 PLN00206 DEAD-box ATP-dependen 75.1 8.3 0.00018 41.5 7.2 70 88-161 196-276 (518)
242 KOG0343 RNA Helicase [RNA proc 74.3 4.7 0.0001 42.7 4.7 111 89-211 142-272 (758)
243 PLN03134 glycine-rich RNA-bind 74.0 60 0.0013 28.3 12.7 59 286-353 34-97 (144)
244 KOG4400 E3 ubiquitin ligase in 73.3 1.7 3.8E-05 42.2 1.4 18 476-493 165-182 (261)
245 KOG0348 ATP-dependent RNA heli 72.9 37 0.0008 36.1 10.7 85 88-177 211-317 (708)
246 COG4907 Predicted membrane pro 72.5 3.1 6.8E-05 42.6 3.0 14 19-32 116-129 (595)
247 TIGR00963 secA preprotein tran 72.3 16 0.00034 40.8 8.5 59 81-146 91-154 (745)
248 KOG0342 ATP-dependent RNA heli 72.1 9.3 0.0002 39.9 6.3 108 89-207 155-283 (543)
249 KOG0116 RasGAP SH3 binding pro 71.8 25 0.00055 36.5 9.4 22 301-322 299-320 (419)
250 KOG0350 DEAD-box ATP-dependent 71.3 11 0.00024 39.5 6.5 72 89-160 216-300 (620)
251 KOG0298 DEAD box-containing he 69.7 6.5 0.00014 45.6 4.9 96 86-185 1219-1315(1394)
252 KOG4284 DEAD box protein [Tran 69.5 21 0.00046 38.7 8.3 84 88-176 93-190 (980)
253 KOG0340 ATP-dependent RNA heli 69.4 7.5 0.00016 39.0 4.7 53 89-145 76-133 (442)
254 PRK02362 ski2-like helicase; P 69.0 8.2 0.00018 43.5 5.7 75 80-161 59-143 (737)
255 PF04364 DNA_pol3_chi: DNA pol 68.3 26 0.00057 30.3 7.5 79 75-164 15-95 (137)
256 cd01523 RHOD_Lact_B Member of 67.6 16 0.00034 29.3 5.8 41 82-122 55-96 (100)
257 PRK12898 secA preprotein trans 67.6 28 0.0006 38.4 9.1 54 86-145 142-200 (656)
258 PF11496 HDA2-3: Class II hist 67.0 50 0.0011 32.7 10.1 122 72-193 95-244 (297)
259 KOG0389 SNF2 family DNA-depend 66.9 18 0.00038 40.2 7.3 68 79-149 439-511 (941)
260 PRK01172 ski2-like helicase; P 66.7 44 0.00096 37.2 10.9 73 81-160 58-140 (674)
261 KOG0337 ATP-dependent RNA heli 66.4 45 0.00097 34.5 9.5 70 88-161 90-170 (529)
262 smart00493 TOPRIM topoisomeras 66.3 16 0.00035 27.5 5.3 59 91-150 2-60 (76)
263 TIGR02621 cas3_GSU0051 CRISPR- 66.2 14 0.0003 41.8 6.6 53 89-145 62-143 (844)
264 PTZ00424 helicase 45; Provisio 65.9 27 0.00058 35.9 8.5 70 88-161 96-176 (401)
265 COG0514 RecQ Superfamily II DN 65.8 17 0.00037 39.4 6.9 58 88-145 57-115 (590)
266 COG2519 GCD14 tRNA(1-methylade 65.2 38 0.00081 32.6 8.4 45 67-111 167-211 (256)
267 cd01524 RHOD_Pyr_redox Member 65.0 18 0.00039 28.4 5.5 41 82-122 45-86 (90)
268 cd00046 DEXDc DEAD-like helica 64.9 33 0.00071 28.2 7.6 70 73-146 12-88 (144)
269 PF05918 API5: Apoptosis inhib 64.9 2.1 4.6E-05 45.8 0.0 18 196-213 263-280 (556)
270 COG1512 Beta-propeller domains 64.6 8.7 0.00019 37.4 4.1 31 165-195 76-109 (271)
271 COG1201 Lhr Lhr-like helicases 64.2 17 0.00037 41.0 6.8 126 29-160 7-154 (814)
272 KOG0346 RNA helicase [RNA proc 63.7 16 0.00035 37.7 5.9 53 89-145 94-153 (569)
273 PRK13104 secA preprotein trans 63.7 26 0.00057 39.9 8.1 61 79-146 115-180 (896)
274 TIGR00631 uvrb excinuclease AB 63.6 55 0.0012 36.3 10.6 107 68-176 36-174 (655)
275 KOG0119 Splicing factor 1/bran 61.8 3.7 8.1E-05 42.5 1.1 16 477-492 287-302 (554)
276 smart00487 DEXDc DEAD-like hel 59.4 68 0.0015 28.3 9.0 85 72-160 35-134 (201)
277 TIGR01648 hnRNP-R-Q heterogene 57.5 1.4E+02 0.003 32.6 12.1 70 287-367 234-307 (578)
278 PRK12899 secA preprotein trans 57.3 40 0.00086 38.6 8.1 53 88-146 135-192 (970)
279 PRK05728 DNA polymerase III su 57.2 35 0.00075 29.8 6.3 82 70-164 10-94 (142)
280 KOG0352 ATP-dependent DNA heli 55.4 18 0.00039 37.3 4.6 81 65-146 39-122 (641)
281 KOG2044 5'-3' exonuclease HKE1 54.4 5.6 0.00012 43.7 0.9 15 478-492 263-277 (931)
282 PRK09200 preprotein translocas 52.6 52 0.0011 37.2 8.1 53 87-145 118-176 (790)
283 COG4359 Uncharacterized conser 51.8 80 0.0017 28.9 7.6 87 2-96 74-166 (220)
284 PRK05298 excinuclease ABC subu 50.9 1.2E+02 0.0027 33.6 10.8 106 69-176 40-177 (652)
285 TIGR00696 wecB_tagA_cpsF bacte 50.8 78 0.0017 28.7 7.7 65 75-139 34-102 (177)
286 PRK00254 ski2-like helicase; P 50.1 38 0.00081 38.1 6.7 68 87-161 67-144 (720)
287 COG0610 Type I site-specific r 49.6 1.4E+02 0.003 34.9 11.2 84 125-209 579-667 (962)
288 KOG1133 Helicase of the DEAD s 49.3 4.2E+02 0.009 29.6 14.8 76 88-166 629-720 (821)
289 PF12353 eIF3g: Eukaryotic tra 49.1 8.8 0.00019 32.9 1.2 16 477-493 108-123 (128)
290 PF03808 Glyco_tran_WecB: Glyc 48.7 74 0.0016 28.6 7.3 68 75-142 34-106 (172)
291 PF14617 CMS1: U3-containing 9 48.5 56 0.0012 31.5 6.7 69 89-160 127-206 (252)
292 COG1512 Beta-propeller domains 48.0 23 0.0005 34.5 4.0 8 138-145 101-108 (271)
293 COG4098 comFA Superfamily II D 48.0 2.7E+02 0.0058 28.3 11.2 146 23-194 91-244 (441)
294 KOG2673 Uncharacterized conser 46.6 9.8 0.00021 39.2 1.2 16 478-493 131-146 (485)
295 PTZ00240 60S ribosomal protein 46.0 1.6E+02 0.0036 29.5 9.7 166 10-211 12-190 (323)
296 COG2927 HolC DNA polymerase II 45.9 2E+02 0.0043 25.2 8.9 78 77-165 17-96 (144)
297 KOG0105 Alternative splicing f 45.8 79 0.0017 28.8 6.6 43 302-349 18-63 (241)
298 KOG2560 RNA splicing factor - 45.7 5.2 0.00011 41.1 -0.9 15 477-491 114-128 (529)
299 cd01518 RHOD_YceA Member of th 44.4 1.5E+02 0.0032 23.5 7.8 37 86-122 59-97 (101)
300 PRK06958 single-stranded DNA-b 43.6 61 0.0013 29.6 5.7 8 286-293 28-35 (182)
301 COG1205 Distinct helicase fami 43.6 55 0.0012 37.5 6.7 101 88-192 115-239 (851)
302 cd06533 Glyco_transf_WecG_TagA 43.4 1.1E+02 0.0023 27.6 7.4 67 75-141 32-103 (171)
303 PF12689 Acid_PPase: Acid Phos 43.0 73 0.0016 28.7 6.2 121 5-135 45-168 (169)
304 PRK06646 DNA polymerase III su 42.5 92 0.002 27.6 6.6 82 70-164 10-93 (154)
305 PF12614 RRF_GI: Ribosome recy 42.1 87 0.0019 26.7 6.0 85 167-267 8-96 (128)
306 smart00450 RHOD Rhodanese Homo 41.6 39 0.00085 26.1 3.9 36 87-122 55-92 (100)
307 COG1204 Superfamily II helicas 40.9 74 0.0016 36.0 7.1 79 75-160 62-151 (766)
308 PRK12904 preprotein translocas 40.6 1.1E+02 0.0023 35.0 8.1 60 79-145 114-178 (830)
309 PF13245 AAA_19: Part of AAA d 40.0 54 0.0012 25.1 4.2 40 69-108 18-62 (76)
310 PF11019 DUF2608: Protein of u 39.5 3E+02 0.0065 26.5 10.2 54 65-118 154-209 (252)
311 KOG0326 ATP-dependent RNA heli 39.2 92 0.002 31.1 6.5 68 89-160 154-232 (459)
312 KOG0314 Predicted E3 ubiquitin 39.2 16 0.00034 38.0 1.4 21 473-493 156-176 (448)
313 PRK14086 dnaA chromosomal repl 38.6 5.5E+02 0.012 28.3 13.0 36 71-106 324-361 (617)
314 cd01444 GlpE_ST GlpE sulfurtra 38.6 71 0.0015 24.9 5.0 42 80-121 48-91 (96)
315 cd01535 4RHOD_Repeat_4 Member 38.6 77 0.0017 27.6 5.6 46 77-122 38-85 (145)
316 COG0353 RecR Recombinational D 38.3 66 0.0014 29.6 5.1 64 87-150 77-149 (198)
317 COG0052 RpsB Ribosomal protein 38.2 66 0.0014 30.8 5.2 38 73-110 48-85 (252)
318 PRK15483 type III restriction- 37.7 1.2E+02 0.0025 35.3 8.0 70 137-206 501-580 (986)
319 KOG0383 Predicted helicase [Ge 37.7 32 0.0007 38.0 3.6 76 74-149 616-695 (696)
320 cd00158 RHOD Rhodanese Homolog 36.0 1.4E+02 0.0031 22.4 6.3 36 86-121 48-85 (89)
321 cd01528 RHOD_2 Member of the R 35.3 95 0.0021 24.7 5.3 37 87-123 57-95 (101)
322 COG3587 Restriction endonuclea 35.2 72 0.0016 36.0 5.6 71 137-207 483-566 (985)
323 PF02445 NadA: Quinolinate syn 35.2 3.5E+02 0.0076 26.8 9.8 91 32-132 89-183 (296)
324 COG0379 NadA Quinolinate synth 35.0 4.7E+02 0.01 26.1 12.2 130 87-236 157-297 (324)
325 KOG1257 NADP+-dependent malic 34.8 6.1E+02 0.013 27.3 16.5 155 90-255 114-275 (582)
326 cd01533 4RHOD_Repeat_2 Member 34.8 96 0.0021 25.1 5.3 36 87-122 65-103 (109)
327 COG5179 TAF1 Transcription ini 34.8 18 0.00038 38.8 1.0 17 476-492 938-956 (968)
328 KOG0385 Chromatin remodeling c 34.3 1.5E+02 0.0033 33.2 7.8 58 86-145 215-275 (971)
329 cd01526 RHOD_ThiF Member of th 33.3 64 0.0014 26.9 4.1 37 86-122 70-109 (122)
330 KOG1137 mRNA cleavage and poly 33.0 6.1E+02 0.013 27.4 11.6 46 113-158 415-464 (668)
331 TIGR02329 propionate_PrpR prop 33.0 3.2E+02 0.0069 29.5 10.2 136 6-145 15-153 (526)
332 cd01529 4RHOD_Repeats Member o 32.8 78 0.0017 24.9 4.3 36 86-121 54-91 (96)
333 KOG0351 ATP-dependent DNA heli 32.7 79 0.0017 36.5 5.8 57 89-145 305-364 (941)
334 cd06578 HemD Uroporphyrinogen- 32.5 1.6E+02 0.0035 27.2 7.2 36 75-110 108-143 (239)
335 KOG0328 Predicted ATP-dependen 32.1 1.1E+02 0.0024 29.9 5.8 71 87-161 94-175 (400)
336 PHA02653 RNA helicase NPH-II; 31.6 1.1E+02 0.0024 34.2 6.5 68 88-161 222-297 (675)
337 PF01751 Toprim: Toprim domain 31.6 30 0.00065 27.9 1.7 60 91-150 1-73 (100)
338 cd00188 TOPRIM Topoisomerase-p 29.5 1.5E+02 0.0033 21.6 5.4 60 91-151 2-61 (83)
339 PRK13529 malate dehydrogenase; 29.5 7.5E+02 0.016 26.9 12.0 55 90-145 100-154 (563)
340 PRK01415 hypothetical protein; 29.5 74 0.0016 30.6 4.2 39 86-124 169-209 (247)
341 PF07652 Flavi_DEAD: Flaviviru 29.5 99 0.0021 27.2 4.6 79 75-161 19-101 (148)
342 PRK00162 glpE thiosulfate sulf 29.3 1.2E+02 0.0026 24.4 5.0 45 78-122 48-94 (108)
343 cd01449 TST_Repeat_2 Thiosulfa 29.0 1.2E+02 0.0026 24.7 5.1 44 78-121 66-113 (118)
344 cd01521 RHOD_PspE2 Member of t 28.9 84 0.0018 25.6 4.0 39 84-122 60-101 (110)
345 KOG1556 26S proteasome regulat 28.7 1.8E+02 0.0039 27.7 6.4 51 1-51 70-126 (309)
346 TIGR00096 probable S-adenosylm 28.7 1.9E+02 0.0041 28.4 6.9 83 73-158 11-93 (276)
347 cd01527 RHOD_YgaP Member of th 28.6 85 0.0018 24.8 3.9 37 86-122 52-90 (99)
348 PHA02558 uvsW UvsW helicase; P 28.5 2.7E+02 0.0058 29.8 8.7 81 69-160 137-227 (501)
349 cd01520 RHOD_YbbB Member of th 28.2 1.1E+02 0.0024 25.7 4.8 39 85-123 83-123 (128)
350 COG1922 WecG Teichoic acid bio 28.2 2.6E+02 0.0056 27.0 7.6 69 74-142 93-166 (253)
351 cd01522 RHOD_1 Member of the R 27.8 1.2E+02 0.0027 25.0 4.9 37 86-122 62-100 (117)
352 cd01531 Acr2p Eukaryotic arsen 27.8 1.8E+02 0.004 23.6 5.9 36 87-122 61-107 (113)
353 cd01534 4RHOD_Repeat_3 Member 27.7 87 0.0019 24.6 3.8 35 88-122 56-91 (95)
354 cd00032 CASc Caspase, interleu 27.7 3.3E+02 0.0071 25.9 8.4 84 87-176 8-108 (243)
355 COG2266 GTP:adenosylcobinamide 27.5 2.2E+02 0.0048 25.8 6.5 37 4-42 72-112 (177)
356 TIGR03714 secA2 accessory Sec 27.0 2.1E+02 0.0045 32.4 7.6 61 79-146 103-173 (762)
357 smart00115 CASc Caspase, inter 27.0 3.7E+02 0.0079 25.6 8.6 83 87-175 7-106 (241)
358 COG0135 TrpF Phosphoribosylant 26.8 5.3E+02 0.011 24.1 9.4 57 75-133 40-97 (208)
359 KOG0952 DNA/RNA helicase MER3/ 26.5 1.9E+02 0.0041 33.6 7.1 51 88-145 164-219 (1230)
360 COG3973 Superfamily I DNA and 26.3 6.3E+02 0.014 27.8 10.6 121 24-164 592-716 (747)
361 PRK03692 putative UDP-N-acetyl 25.8 3E+02 0.0066 26.3 7.7 67 75-141 91-161 (243)
362 cd01532 4RHOD_Repeat_1 Member 25.8 1.1E+02 0.0024 23.9 4.1 36 87-122 49-88 (92)
363 cd01448 TST_Repeat_1 Thiosulfa 25.0 1.5E+02 0.0032 24.4 4.9 37 86-122 77-116 (122)
364 COG1587 HemD Uroporphyrinogen- 24.9 2.2E+02 0.0048 27.1 6.7 73 73-145 107-183 (248)
365 PTZ00317 NADP-dependent malic 24.6 6.4E+02 0.014 27.4 10.4 57 89-146 101-157 (559)
366 cd01519 RHOD_HSP67B2 Member of 23.9 96 0.0021 24.7 3.4 35 87-121 65-101 (106)
367 PRK13103 secA preprotein trans 23.4 3.3E+02 0.0072 31.4 8.4 64 77-147 113-181 (913)
368 PLN02160 thiosulfate sulfurtra 23.3 1.5E+02 0.0033 25.3 4.8 37 86-122 79-117 (136)
369 KOG0386 Chromatin remodeling c 23.2 1.1E+02 0.0024 35.2 4.6 71 75-145 431-501 (1157)
370 COG0240 GpsA Glycerol-3-phosph 23.2 6.5E+02 0.014 25.4 9.6 68 75-147 113-180 (329)
371 PF02602 HEM4: Uroporphyrinoge 23.1 81 0.0018 29.4 3.2 131 8-144 29-175 (231)
372 PRK10287 thiosulfate:cyanide s 22.5 2.7E+02 0.0059 22.6 5.8 34 88-121 60-94 (104)
373 cd01447 Polysulfide_ST Polysul 22.3 92 0.002 24.6 3.0 36 86-121 59-96 (103)
374 COG1099 Predicted metal-depend 22.0 6.9E+02 0.015 23.8 9.2 33 119-153 187-219 (254)
375 PRK13107 preprotein translocas 21.9 2.9E+02 0.0062 31.9 7.5 62 77-145 113-179 (908)
376 TIGR00036 dapB dihydrodipicoli 21.9 2.4E+02 0.0052 27.3 6.3 58 88-145 69-126 (266)
377 PF06200 tify: tify domain; I 21.9 90 0.002 20.3 2.2 16 336-351 17-33 (36)
378 KOG0119 Splicing factor 1/bran 21.8 44 0.00096 35.0 1.2 16 478-493 264-279 (554)
379 cd02974 AhpF_NTD_N Alkyl hydro 21.5 2.1E+02 0.0045 23.0 4.8 41 1-41 1-43 (94)
380 KOG0116 RasGAP SH3 binding pro 21.4 1.9E+02 0.0041 30.2 5.6 13 139-152 122-134 (419)
381 cd01525 RHOD_Kc Member of the 21.3 1.3E+02 0.0029 23.8 3.8 35 88-122 65-101 (105)
382 cd05212 NAD_bind_m-THF_DH_Cycl 20.4 5.7E+02 0.012 22.1 8.7 84 76-166 13-103 (140)
383 KOG3070 Predicted RNA-binding 20.2 50 0.0011 31.5 1.1 17 477-493 201-217 (235)
384 PRK05320 rhodanese superfamily 20.1 1.8E+02 0.004 28.1 5.0 37 87-123 174-212 (257)
385 PF12321 DUF3634: Protein of u 20.1 1.8E+02 0.004 24.1 4.2 39 4-42 44-92 (108)
No 1
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.7e-52 Score=447.53 Aligned_cols=344 Identities=29% Similarity=0.472 Sum_probs=299.2
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (493)
||+|||.++++.|++.+|...|+++||||+|+.+..++++|+++|..|.+... ......+.+.++.+....|.+.|..
T Consensus 161 ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~--~~~~~~i~q~~~~v~~~~k~~~L~~ 238 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSS--VTTRPDISQSYWTVWGMRKNEALVR 238 (629)
T ss_pred HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCc--cccCCceEEEEEEechhhHHHHHHH
Confidence 78999999999999999999999999999999999999999999988876532 3344567788888887788888888
Q ss_pred HHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEE
Q 011113 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (493)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~V 159 (493)
++... ...++||||+|+..++.|++.|.. ++.+..+|++|++.+|++++++|++++++|||||+++++|||+|+|++|
T Consensus 239 ~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 239 FLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 88764 457899999999999999999985 7899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCCCHHHHHHHHHHHHHHHhcCC-Cc
Q 011113 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV-HP 238 (493)
Q Consensus 160 I~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~-~~ 238 (493)
||||+|.++++|+||+|||||+|+.|.+++|+++.+...++.|++.++.+++++.+|..+++.+.....+...+... ..
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 397 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLES 397 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999998888888877776543 23
Q ss_pred cchhhhHHHHHHHHhh-----hCHHHHHHHHHHHcCCCCC------C-----C---Ccc-----------------c--c
Q 011113 239 ESVEFFTPTAQRLIEE-----KGTDALAAALAQLSGFSRP------P-----S---SRS-----------------L--I 280 (493)
Q Consensus 239 ~~~~~~~~~~~~l~~~-----~~~~~l~aal~~~~~~~~~------~-----~---~~~-----------------~--~ 280 (493)
+.++.|.+.+++++++ .+.+.++++|+.+.--..+ + . .+. . .
T Consensus 398 ~~~~~~~~~~~~l~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (629)
T PRK11634 398 SDLDQYRALLAKIQPTAEGEELDLETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477 (629)
T ss_pred hhHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccc
Confidence 4577788888888764 6789999999988632111 0 0 000 0 0
Q ss_pred c---CCCCeEEEEEeecCccccCCcchhhHHHHhhhhcCcCcCccccEEEeeccccceeEeecCHHHHHHHHhhcCC
Q 011113 281 N---HEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (493)
Q Consensus 281 ~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~~~~gs~fdvp~~~a~~~~~~~~~ 354 (493)
. ...+|++++++.|+ ++++.|++|+++|++...+...+||+|+|+++| ++||||++.++++++....
T Consensus 478 ~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~----s~v~~~~~~~~~~~~~~~~ 547 (629)
T PRK11634 478 RERRDVGDMQLYRIEVGR---DDGVEVRHIVGAIANEGDISSRYIGNIKLFASH----STIELPKGMPGEVLQHFTR 547 (629)
T ss_pred cccccCCCCEEEEEeccc---ccCCCHHHHHHHHHhhcCCChhhCCcEEEeCCc----eEEEcChhhHHHHHHHhcc
Confidence 0 12269999999999 899999999999999999999999999999998 7999999999999987643
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-44 Score=364.60 Aligned_cols=206 Identities=45% Similarity=0.725 Sum_probs=191.2
Q ss_pred CCCCcHHHHHHHHHHhC-CCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHH
Q 011113 1 MLAVGFEEDVELILENL-PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~-~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 79 (493)
||||||+++|+.|+.++ ++.+|+|++|||+|.||+.++..||++|..|++..........++.|....+++..|...|.
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~ 330 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLG 330 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHH
Confidence 99999999999999999 56679999999999999999999999999998876556667788999999999999999999
Q ss_pred HHHHHHc--CCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCc
Q 011113 80 DLITVYA--KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 156 (493)
Q Consensus 80 ~ll~~~~--~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v 156 (493)
.+|..+. +..|+||||+|++.|++|+..|.. .+.+..|||+++|.+|+.+|+.|++|++.||||||||+||||||+|
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV 410 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDV 410 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccc
Confidence 9998884 567999999999999999999997 6999999999999999999999999999999999999999999999
Q ss_pred cEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHh
Q 011113 157 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (493)
Q Consensus 157 ~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~ 206 (493)
++|||||+|.++++|+||+|||||++++|.+++|++..+......+.+.+
T Consensus 411 ~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l 460 (519)
T KOG0331|consen 411 DLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVL 460 (519)
T ss_pred cEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877666664443
No 3
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-42 Score=316.86 Aligned_cols=213 Identities=35% Similarity=0.603 Sum_probs=198.8
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCccc-HHHHHH
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILS 79 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~ 79 (493)
||+.||.+++-.|++++|+..|++++|||+|.+|.+..++|+.+|+.|-+. +.+.+...|+++++.+..++ |.+.|.
T Consensus 181 mL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvk--rdeltlEgIKqf~v~ve~EewKfdtLc 258 (400)
T KOG0328|consen 181 MLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVK--RDELTLEGIKQFFVAVEKEEWKFDTLC 258 (400)
T ss_pred HHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEe--cCCCchhhhhhheeeechhhhhHhHHH
Confidence 788999999999999999999999999999999999999999999987553 45666777999999887765 999999
Q ss_pred HHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccE
Q 011113 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (493)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~ 158 (493)
+|.+.+. -.+++|||||+..++.|.+.+++ .+.+..+||+|+|++|+++++.||+++.+|||+||+.+||||+|.|++
T Consensus 259 dLYd~Lt-ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVsl 337 (400)
T KOG0328|consen 259 DLYDTLT-ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSL 337 (400)
T ss_pred HHhhhhe-hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEE
Confidence 9888764 47999999999999999999986 889999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCC
Q 011113 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (493)
Q Consensus 159 VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (493)
|||||+|.+.+.|+||+||.||.|++|+++-|+...+.+.++.+|+++..++.++++.
T Consensus 338 viNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~n 395 (400)
T KOG0328|consen 338 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMN 395 (400)
T ss_pred EEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccch
Confidence 9999999999999999999999999999999999999999999999999998887655
No 4
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.6e-41 Score=333.71 Aligned_cols=270 Identities=34% Similarity=0.501 Sum_probs=222.3
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcC-CCceEEeccccccccccceEEEEEEcCcccHHHHHH
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 79 (493)
+|||||+++|+.|++.+|..+|++|||||+|+.|+++++-.|+ +|..|+++......+...++|-|+.++...+..++.
T Consensus 242 lLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~ 321 (543)
T KOG0342|consen 242 LLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLY 321 (543)
T ss_pred hhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHH
Confidence 5899999999999999999999999999999999999998887 589999998888888999999999998888888999
Q ss_pred HHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccE
Q 011113 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (493)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~ 158 (493)
.+|+.+....++||||+|...+..+++.|.. .++|..+||.++|..|..+...|++.+.-|||||||+|||+|+|+|++
T Consensus 322 ~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~ 401 (543)
T KOG0342|consen 322 TFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDW 401 (543)
T ss_pred HHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceE
Confidence 9998876669999999999999999999985 789999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCCCH-HHHHHHHHHHHHHHhcCCC
Q 011113 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV-EDVLESSAEQVVATLNGVH 237 (493)
Q Consensus 159 VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~l~~~~ 237 (493)
||+||+|.++++||||+|||||.|++|.+++++.|.|..+++.|+ +.++++.+.|.. .+.++...+.++..-....
T Consensus 402 VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e~~~~~~~~v~~~~~~li~~~y~~~ 478 (543)
T KOG0342|consen 402 VVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK---KLPLEEFEFPPLKPEDVQSQLEKLISKNYSLK 478 (543)
T ss_pred EEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh---hCCCcccCCCCCCHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999999999999999998 455666555543 2334444444444222222
Q ss_pred ccchhhhHHHHHH-----HHh--hhCHHHHHHHHHHHcCCCCCC
Q 011113 238 PESVEFFTPTAQR-----LIE--EKGTDALAAALAQLSGFSRPP 274 (493)
Q Consensus 238 ~~~~~~~~~~~~~-----l~~--~~~~~~l~aal~~~~~~~~~~ 274 (493)
....+.|..+..- +.. ....-.|+ ++++.+|++.||
T Consensus 479 ~aak~ay~syl~~y~s~slk~~~~~~~l~La-~~~~s~gf~~pp 521 (543)
T KOG0342|consen 479 EAAKEAYKSYLGAYNSHSLKDIFNVNLLELA-AVAKSFGFSVPP 521 (543)
T ss_pred HHHHHHHHhhhhhccchhhhcccccchhhHH-HHHHHcCCCCCc
Confidence 2222222222111 111 11223455 888888888765
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-41 Score=356.18 Aligned_cols=219 Identities=43% Similarity=0.731 Sum_probs=200.0
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCccc-HHHHHH
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILS 79 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~ 79 (493)
||||||.++++.|+..+|+++|+++||||+|..+.++++.++++|..|.+.......+...+.|+++.+.... |..+|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999888764444447788999999998876 999999
Q ss_pred HHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccE
Q 011113 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (493)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~ 158 (493)
.+++... ..++||||+|+..|+.|+..|.. ++.+..|||+|+|++|.++++.|++++++||||||+++||||||+|++
T Consensus 266 ~ll~~~~-~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 266 KLLKDED-EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred HHHhcCC-CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 9998763 45899999999999999999986 799999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCChhHHHHHhhccCCCCCcceEEEecChh-hHHHHHHHHHHhCCCce-eeCCCCHHH
Q 011113 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFE-FVSPPVVED 220 (493)
Q Consensus 159 VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~~~~~-~~~~p~~~~ 220 (493)
|||||+|.++++|+||+|||||+|++|.+++|+++. |...+..+++.+...++ ...+|..+.
T Consensus 345 VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~~ 408 (513)
T COG0513 345 VINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEP 408 (513)
T ss_pred eEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcchh
Confidence 999999999999999999999999999999999986 89999999999877765 455554443
No 6
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-41 Score=323.31 Aligned_cols=213 Identities=36% Similarity=0.591 Sum_probs=200.1
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (493)
+|||.|.++++.||+.+|.++|++|||||||+.|.++.+..+++|+.|.+. ....+.++++++|+.++...|...|..
T Consensus 216 lLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s--~ky~tv~~lkQ~ylfv~~k~K~~yLV~ 293 (476)
T KOG0330|consen 216 LLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVS--SKYQTVDHLKQTYLFVPGKDKDTYLVY 293 (476)
T ss_pred hhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEecc--chhcchHHhhhheEeccccccchhHHH
Confidence 589999999999999999999999999999999999999999999998765 455677889999999999999999999
Q ss_pred HHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEE
Q 011113 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (493)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~V 159 (493)
|++.. .+..+||||+|...++.++-.|.. ++.+..|||+|+|..|.-.++.|+++..+||||||+++||+|||.|++|
T Consensus 294 ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~V 372 (476)
T KOG0330|consen 294 LLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVV 372 (476)
T ss_pred HHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEE
Confidence 99876 458999999999999999999996 8999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCC
Q 011113 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (493)
Q Consensus 160 I~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (493)
||||+|.+..+||||+|||+|+|++|.+|.|++..|.+.+.+||..++.+....+++
T Consensus 373 VNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~ 429 (476)
T KOG0330|consen 373 VNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVD 429 (476)
T ss_pred EecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcc
Confidence 999999999999999999999999999999999999999999999999987665444
No 7
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=5.7e-40 Score=325.54 Aligned_cols=203 Identities=40% Similarity=0.640 Sum_probs=184.6
Q ss_pred CCCCcHHHHHHHHHHhCCC---C----------------------CcEEEEeccCChHHHHHHHHhcCCCceEEeccccc
Q 011113 1 MLAVGFEEDVELILENLPP---K----------------------RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQD 55 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~---~----------------------~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~ 55 (493)
|+||||.+|+..||.++|. . +|+++||||||+.+..|++.||.+|+.|.+- ..
T Consensus 408 miDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig--~~ 485 (673)
T KOG0333|consen 408 MIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIG--SA 485 (673)
T ss_pred hhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEec--cC
Confidence 8999999999999999973 1 7999999999999999999999999998765 33
Q ss_pred cccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhccc
Q 011113 56 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFR 134 (493)
Q Consensus 56 ~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~ 134 (493)
......++|.++.+...+|...|..+|+.. -..++|||+|+++.|+.|++.|.+ ++.+..|||+-+|++|+.+++.|+
T Consensus 486 gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr 564 (673)
T KOG0333|consen 486 GKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFR 564 (673)
T ss_pred CCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHH
Confidence 455677888888888889998998888876 457999999999999999999997 899999999999999999999999
Q ss_pred CCCEEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHh
Q 011113 135 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (493)
Q Consensus 135 ~g~~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~ 206 (493)
.+..+||||||+++||||||+|++|||||++.++++|+||+|||||+|+.|++++|+++.+...+..|.+.+
T Consensus 565 ~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l 636 (673)
T KOG0333|consen 565 EGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQAL 636 (673)
T ss_pred hcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998866555554444
No 8
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.6e-38 Score=330.29 Aligned_cols=285 Identities=31% Similarity=0.507 Sum_probs=247.0
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (493)
|+++||..+++.|++.+|+.+|+++||||+|+.+..+++.++++|..+.+.... ....+.++++.+....|.+.|..
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~---~~~~i~~~~~~~~~~~k~~~l~~ 235 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH---DLPAIEQRFYEVSPDERLPALQR 235 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC---CCCCeeEEEEEeCcHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999888765322 23457788888888889999999
Q ss_pred HHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEE
Q 011113 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (493)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~V 159 (493)
++... ...++||||+|++.|+.+++.|.. .+.+..+||+|++.+|+.+++.|++|+++|||||+++++|||+|++++|
T Consensus 236 ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~V 314 (460)
T PRK11776 236 LLLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAV 314 (460)
T ss_pred HHHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeE
Confidence 88765 457899999999999999999986 8899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCCCHHHHHHHHHHHHHHHhcCCCcc
Q 011113 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239 (493)
Q Consensus 160 I~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~ 239 (493)
|||++|.+.++|+||+|||||+|++|.+++|+.+.|...++.+++.++..+++.++|......
T Consensus 315 I~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~l~~~~~~~----------------- 377 (460)
T PRK11776 315 INYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWEPLPSLSPLS----------------- 377 (460)
T ss_pred EEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCceecCCchhhcc-----------------
Confidence 999999999999999999999999999999999999999999999999888877766432110
Q ss_pred chhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEEEEeecCccccCCcchhhHHHHhhhhcCcCc
Q 011113 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA 319 (493)
Q Consensus 240 ~~~~~~~~~~~l~~~~~~~~l~aal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 319 (493)
..+ ....+.++.+..++ +.++.+.++++.+........
T Consensus 378 -------------------------------~~~--------~~~~~~~l~i~~~~---~~~~~~~~~~~~~~~~~~~~~ 415 (460)
T PRK11776 378 -------------------------------GVP--------LLPEMVTLCIDGGK---KDKLRPGDILGALTGDAGLDG 415 (460)
T ss_pred -------------------------------ccc--------CCCCeEEEEEeccc---ccCCCccchHHHhhcccCCCh
Confidence 000 02246788887776 566778899999888877788
Q ss_pred CccccEEEeeccccceeEeecCHHHHHHHHhhc
Q 011113 320 DEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQ 352 (493)
Q Consensus 320 ~~ig~i~i~~~~~~~gs~fdvp~~~a~~~~~~~ 352 (493)
.++|.|++.+.+ ++++++.+.++.++...
T Consensus 416 ~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~ 444 (460)
T PRK11776 416 AQIGKINVTDFH----AYVAVERAVAKKALKKL 444 (460)
T ss_pred hhcCCccccccc----ceeecchhhHHHHHHHh
Confidence 889999998876 79999999888888653
No 9
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-38 Score=316.12 Aligned_cols=273 Identities=29% Similarity=0.408 Sum_probs=219.9
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (493)
||||||.+.|+.|+.++|+.+||||||||....|.++++..++||+.|.+.......++.+++|+|+.++..+|+.+|..
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~s 306 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWS 306 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHH
Confidence 79999999999999999999999999999999999999999999999988766667788999999999999999999999
Q ss_pred HHHHHcCCCeEEEEeCChHHHHHHHHHHHc---cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCcc
Q 011113 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (493)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~ 157 (493)
+|..+ ...++|||+.|.+++..+++.+.+ ++++..|||.|+|..|..++++|-....-||+|||+++||||+|.|+
T Consensus 307 FI~sh-lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVd 385 (758)
T KOG0343|consen 307 FIKSH-LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVD 385 (758)
T ss_pred HHHhc-cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccc
Confidence 99987 458999999999999999999875 78999999999999999999999998999999999999999999999
Q ss_pred EEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhh-HHHHHHHHHHhCCCceeeCCCCH-HHHHHHHHHHHHHHhcC
Q 011113 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVV-EDVLESSAEQVVATLNG 235 (493)
Q Consensus 158 ~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e-~~~~~~l~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~l~~ 235 (493)
+||++|.|.++++|+||+|||+|....|.++++++|.| ..++..|++.. ++++.+.+.+. -.-+...++.++..-.+
T Consensus 386 wViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i~i~~~k~~~i~~~l~~ll~~~~e 464 (758)
T KOG0343|consen 386 WVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEIKIDPEKLTSIRNKLEALLAKDPE 464 (758)
T ss_pred eEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhhccCHHHhhhHHHHHHHHHhhCHH
Confidence 99999999999999999999999999999999999998 56677776653 66655444321 11122333333332222
Q ss_pred CCccchhhhHHHHHHHHhhhCHHH------HHHHHHHHcCCCCCCC
Q 011113 236 VHPESVEFFTPTAQRLIEEKGTDA------LAAALAQLSGFSRPPS 275 (493)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~~~~~~------l~aal~~~~~~~~~~~ 275 (493)
+..-....|..++..+....+... =+.|++..+|++..|+
T Consensus 465 Lk~~aqka~isY~rsi~~~rdK~~f~~~~l~~~afa~s~Gl~~~p~ 510 (758)
T KOG0343|consen 465 LKEYAQKAFISYLRSIYLMRDKRVFDVEKLDIEAFADSLGLPGTPR 510 (758)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhcchhccHHHHHHhcCCCCCch
Confidence 222222345555555443322221 1556777677654443
No 10
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-38 Score=303.84 Aligned_cols=203 Identities=36% Similarity=0.601 Sum_probs=186.3
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (493)
||||||+.+|..||-.+.+++|+++.|||+|+.|.+|+..|+++|..+.+- .-.-.....+++..+.....+|++++..
T Consensus 379 MLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vG-sLdL~a~~sVkQ~i~v~~d~~k~~~~~~ 457 (629)
T KOG0336|consen 379 MLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVG-SLDLVAVKSVKQNIIVTTDSEKLEIVQF 457 (629)
T ss_pred hhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEec-ccceeeeeeeeeeEEecccHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999877543 2233345667788888888899999999
Q ss_pred HHHHHcCCCeEEEEeCChHHHHHHHHHHH-ccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEE
Q 011113 81 LITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (493)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~V 159 (493)
+++.+.+..++||||..+..|+.|...|. .++.+..|||+-.|.+|+..++.|++|+++||||||+++||||+|+|+||
T Consensus 458 f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV 537 (629)
T KOG0336|consen 458 FVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHV 537 (629)
T ss_pred HHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhccee
Confidence 99999889999999999999999998887 58999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHH
Q 011113 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (493)
Q Consensus 160 I~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (493)
+|||+|.+++.|+||+|||||+|++|+++.|++..+......|-+
T Consensus 538 ~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ 582 (629)
T KOG0336|consen 538 YNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQ 582 (629)
T ss_pred eccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHH
Confidence 999999999999999999999999999999999999877766543
No 11
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-38 Score=307.37 Aligned_cols=219 Identities=34% Similarity=0.511 Sum_probs=198.0
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (493)
+|||||.+++..|++.+|++++|-|||||+..++.++++..++||+.|.+.......++..+..+|+.+.+..|...|.+
T Consensus 169 LldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~ 248 (567)
T KOG0345|consen 169 LLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVH 248 (567)
T ss_pred HhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999988766555578889999999999999999999
Q ss_pred HHHHHcCCCeEEEEeCChHHHHHHHHHHHc---cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCcc
Q 011113 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (493)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~ 157 (493)
+|..+ +..++|||.+|...++..+..|.. ...+..+||.|.+.+|.++++.|++..-.+|+||||++||||||+|+
T Consensus 249 ~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD 327 (567)
T KOG0345|consen 249 LLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGID 327 (567)
T ss_pred HHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCce
Confidence 99875 678999999999999999998874 57799999999999999999999998888999999999999999999
Q ss_pred EEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCCCHHH
Q 011113 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 220 (493)
Q Consensus 158 ~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~ 220 (493)
+||+||+|.++..|+||+|||+|+|+.|.+++|+.|.|..++.-+.-.-...++++..+....
T Consensus 328 ~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e~~~~ 390 (567)
T KOG0345|consen 328 LVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDTEKASL 390 (567)
T ss_pred EEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcccccch
Confidence 999999999999999999999999999999999999998888777555455556555554443
No 12
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-37 Score=287.56 Aligned_cols=211 Identities=30% Similarity=0.538 Sum_probs=199.3
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (493)
||+..|.+-|+.|+..+|+++|++|+|||.|-.|+.+..++|++|..|.+- ++.+...+.+||..+.+.+|..-|..
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM---~eLtl~GvtQyYafV~e~qKvhCLnt 315 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM---EELTLKGVTQYYAFVEERQKVHCLNT 315 (459)
T ss_pred hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh---hhhhhcchhhheeeechhhhhhhHHH
Confidence 688899999999999999999999999999999999999999999999875 55677889999999999999999988
Q ss_pred HHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEE
Q 011113 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (493)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~V 159 (493)
|...+. -.++|||||+...++.||+.+.+ ++++.++|+.|.|++|.+++..|++|.++.|||||.+.||||+++|++|
T Consensus 316 LfskLq-INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvV 394 (459)
T KOG0326|consen 316 LFSKLQ-INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVV 394 (459)
T ss_pred HHHHhc-ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEE
Confidence 887763 36899999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCC
Q 011113 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (493)
Q Consensus 160 I~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~ 215 (493)
||||+|.+.++|+||+||.||.|..|.+|.|++-.|+..+.++|+.++..++.++.
T Consensus 395 INFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~ 450 (459)
T KOG0326|consen 395 INFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPS 450 (459)
T ss_pred EecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCC
Confidence 99999999999999999999999999999999999999999999999999877653
No 13
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-36 Score=286.98 Aligned_cols=217 Identities=31% Similarity=0.502 Sum_probs=193.1
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (493)
||+-.|-++|+-|++.+|..+|++|||||+.+.+.++...-.+.+....+.......+...+.+.|+.++...|...|..
T Consensus 165 vL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~ 244 (442)
T KOG0340|consen 165 VLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVH 244 (442)
T ss_pred hhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHH
Confidence 68889999999999999999999999999999888876444443222222222445567788899999999999999999
Q ss_pred HHHHHcC--CCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCcc
Q 011113 81 LITVYAK--GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (493)
Q Consensus 81 ll~~~~~--~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~ 157 (493)
+|..+.. ...++||++|..+|+.|+..|.. .+.+..+|+.|+|.+|...+.+|+++.++|||||||++||+|||.|+
T Consensus 245 ~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~ 324 (442)
T KOG0340|consen 245 LLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVE 324 (442)
T ss_pred HHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCcee
Confidence 9988754 67899999999999999999986 79999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCCC
Q 011113 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV 217 (493)
Q Consensus 158 ~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~ 217 (493)
+|||||+|.++.+|+||+|||+|+|+.|.++.++++.|.+.+..||..++.++.+....+
T Consensus 325 LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~ 384 (442)
T KOG0340|consen 325 LVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQ 384 (442)
T ss_pred EEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccccc
Confidence 999999999999999999999999999999999999999999999999999988765443
No 14
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-36 Score=296.05 Aligned_cols=202 Identities=35% Similarity=0.574 Sum_probs=181.1
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCc---ccHHHH
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA---TSKRTI 77 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~---~~k~~~ 77 (493)
||+.||.++|.+|+..+|+++|++||||||..+|.+|++-.|+.|+.|-+.. +..++..+.+.++...+ ..+..+
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~--~~~~a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDP--NKDTAPKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCC--ccccchhhhHHHheeccccccccHHH
Confidence 8999999999999999999999999999999999999999999999987753 34455566666665443 356777
Q ss_pred HHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCc
Q 011113 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 156 (493)
Q Consensus 78 l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v 156 (493)
|..|+.... ..++|||+.|++.|..+.-.|-- ++.+.-|||.|+|.+|...++.|++.+++||||||+++|||||+.|
T Consensus 417 l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 417 LASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 777776653 58999999999999999888764 8899999999999999999999999999999999999999999999
Q ss_pred cEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHH
Q 011113 157 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (493)
Q Consensus 157 ~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~ 205 (493)
.+||||.+|.+.+.|+||+|||+|+|+.|.+++|+...++..++.+-+.
T Consensus 496 ~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 496 QTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred eEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999988665
No 15
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.2e-36 Score=290.02 Aligned_cols=192 Identities=32% Similarity=0.569 Sum_probs=164.9
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (493)
|+||||.+||+.|+......+|++|||||||+.|+.+++.-+-.|+.|.+-. ......++.+....+..+.|.-.|.+
T Consensus 338 miDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGR--AGAAsldViQevEyVkqEaKiVylLe 415 (610)
T KOG0341|consen 338 MIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGR--AGAASLDVIQEVEYVKQEAKIVYLLE 415 (610)
T ss_pred HhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEeccc--ccccchhHHHHHHHHHhhhhhhhHHH
Confidence 8999999999999999999999999999999999999999999999987642 11222223222233444455554444
Q ss_pred HHHHHcCCCeEEEEeCChHHHHHHHHHHH-ccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEE
Q 011113 81 LITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (493)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~V 159 (493)
.|+. ...++||||..+.+++.+.++|- ++..+..+||+-.|++|...++.|+.|+-+|||||||++.|+|+|++.||
T Consensus 416 CLQK--T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHV 493 (610)
T KOG0341|consen 416 CLQK--TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHV 493 (610)
T ss_pred Hhcc--CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhh
Confidence 4433 35799999999999999999987 68999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhH
Q 011113 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (493)
Q Consensus 160 I~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (493)
||||+|.+++.|+||+|||||.|++|.+.+|+.....
T Consensus 494 INyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 494 INYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQE 530 (610)
T ss_pred ccCCChHHHHHHHHHhcccCCCCCcceeeeeecccch
Confidence 9999999999999999999999999999999987543
No 16
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-34 Score=279.87 Aligned_cols=211 Identities=34% Similarity=0.605 Sum_probs=198.0
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (493)
||..||+++|..|++++|++.|++++|||+|.|+..+.++|+++|..|.+. ....+...+.++|+.+....|+..|.+
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vk--k~~ltl~gikq~~i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVK--KDELTLEGIKQFYINVEKEEKLDTLCD 258 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEec--chhhhhhheeeeeeeccccccccHHHH
Confidence 789999999999999999999999999999999999999999999998765 344667889999999988889999988
Q ss_pred HHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEE
Q 011113 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (493)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~V 159 (493)
+.+ .-.+++|||||++.++.+...|.. .+.+.++|++|.|.+|+.++..|++|+.+|||+|+.++||||+.++++|
T Consensus 259 l~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 259 LYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 887 347899999999999999999975 7899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCC
Q 011113 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (493)
Q Consensus 160 I~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (493)
|||++|...++|+||+||+||.|++|.++.+++..+...++.+++.+...+++++..
T Consensus 336 inydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred eeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccc
Confidence 999999999999999999999999999999999999999999999999999887643
No 17
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.3e-34 Score=304.77 Aligned_cols=206 Identities=34% Similarity=0.579 Sum_probs=181.9
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcC-CCceEEeccccccccccceEEEEEEcCcccHHHHHH
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 79 (493)
||++||.++++.|+..+++++|+++||||+|+++..+++.++. ++..+.+... .......+.+.+..+....|...|.
T Consensus 289 mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~-~l~~~~~i~q~~~~~~~~~k~~~L~ 367 (545)
T PTZ00110 289 MLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSL-DLTACHNIKQEVFVVEEHEKRGKLK 367 (545)
T ss_pred hhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCC-ccccCCCeeEEEEEEechhHHHHHH
Confidence 7899999999999999999999999999999999999999886 4666655322 2233456777777777778888888
Q ss_pred HHHHHHc-CCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCcc
Q 011113 80 DLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (493)
Q Consensus 80 ~ll~~~~-~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~ 157 (493)
.++..+. ...++||||+|++.|+.|+..|.. .+.+..+||++++++|+.+++.|++|+++|||||+++++|||||+|+
T Consensus 368 ~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~ 447 (545)
T PTZ00110 368 MLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVK 447 (545)
T ss_pred HHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCC
Confidence 8887764 567999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhC
Q 011113 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (493)
Q Consensus 158 ~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~ 207 (493)
+|||||+|.++++|+||+|||||+|++|.+++|+++.+...++.|.+.+.
T Consensus 448 ~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~ 497 (545)
T PTZ00110 448 YVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLR 497 (545)
T ss_pred EEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988877777766543
No 18
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=6.6e-34 Score=298.53 Aligned_cols=210 Identities=39% Similarity=0.612 Sum_probs=188.4
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (493)
||+++|..+++.|+..++..+|+++||||+++++..++.+++.+|..+.+... ......+.+++..+....+.++|..
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~k~~~l~~ 238 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR--NTASEQVTQHVHFVDKKRKRELLSQ 238 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecc--cccccceeEEEEEcCHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999988776532 2334567777777777778888877
Q ss_pred HHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEE
Q 011113 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (493)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~V 159 (493)
++... ...++||||+|+..++.|++.|.. .+.+..+||+|++.+|.++++.|++|+++|||||+++++|||+|+|++|
T Consensus 239 l~~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 239 MIGKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHHcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 77643 457999999999999999999985 7899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceee
Q 011113 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (493)
Q Consensus 160 I~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~ 213 (493)
|||++|.++++|+||+|||||+|..|.+++|+.+.|...++.+++.+..++++.
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~~ 371 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRI 371 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCccc
Confidence 999999999999999999999999999999999999999999999887776443
No 19
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.2e-34 Score=295.96 Aligned_cols=211 Identities=34% Similarity=0.554 Sum_probs=187.8
Q ss_pred CCCCcHHHHHHHHHHhCCC--CCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHH
Q 011113 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~--~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 78 (493)
|+++||..+++.|+..+|. .+|+++||||++..+.+++..++++|..+.+... ......+.+.++......|...|
T Consensus 169 l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~--~~~~~~i~~~~~~~~~~~k~~~l 246 (423)
T PRK04837 169 MFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPE--QKTGHRIKEELFYPSNEEKMRLL 246 (423)
T ss_pred HhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCC--CcCCCceeEEEEeCCHHHHHHHH
Confidence 6889999999999999984 5778999999999999999999999988876432 23345566666666667788888
Q ss_pred HHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCcc
Q 011113 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (493)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~ 157 (493)
..+++.. ...++||||+|+..|+.++..|.. ++.+..+||+|++++|..+++.|++|+++||||||++++|||+|+|+
T Consensus 247 ~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~ 325 (423)
T PRK04837 247 QTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVT 325 (423)
T ss_pred HHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccC
Confidence 8887654 457999999999999999999985 89999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeC
Q 011113 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (493)
Q Consensus 158 ~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (493)
+|||||+|.+.++|+||+|||||.|+.|.+++|+++.+...+..+++.+...++..+
T Consensus 326 ~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~ 382 (423)
T PRK04837 326 HVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSK 382 (423)
T ss_pred EEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCcc
Confidence 999999999999999999999999999999999999999999999999887765443
No 20
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-33 Score=302.32 Aligned_cols=209 Identities=34% Similarity=0.545 Sum_probs=185.9
Q ss_pred CCCCcHHHHHHHHHHhCCC--CCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHH
Q 011113 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~--~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 78 (493)
|+++||..+|+.|++.+|. .+|+++||||++..+..++..++.+|..+.+.. .......+.+.++.+....|...|
T Consensus 171 lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~--~~~~~~~i~q~~~~~~~~~k~~~L 248 (572)
T PRK04537 171 MFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVET--ETITAARVRQRIYFPADEEKQTLL 248 (572)
T ss_pred HhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecc--ccccccceeEEEEecCHHHHHHHH
Confidence 6889999999999999987 789999999999999999999999887765532 223445667777777777788887
Q ss_pred HHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCcc
Q 011113 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (493)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~ 157 (493)
..++... ...++||||+|++.|+.|++.|.+ .+.+..+|++|++.+|+++++.|++++++||||||++++|||+|+|+
T Consensus 249 ~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~ 327 (572)
T PRK04537 249 LGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVK 327 (572)
T ss_pred HHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCC
Confidence 7777643 467999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCcee
Q 011113 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212 (493)
Q Consensus 158 ~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~ 212 (493)
+|||||+|.++++|+||+|||||.|++|.+++|+.+.+...+..+++.+..+++.
T Consensus 328 ~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~ 382 (572)
T PRK04537 328 YVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPV 382 (572)
T ss_pred EEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCc
Confidence 9999999999999999999999999999999999999988899998888766643
No 21
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-34 Score=272.10 Aligned_cols=215 Identities=31% Similarity=0.496 Sum_probs=191.5
Q ss_pred CcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCc-ccHHHHHHHHH
Q 011113 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (493)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll 82 (493)
.||.++-..|...+|++.|+||||||....+.+++.+.+.++..+.+. .+......|.++|+.|.. .+|.++|..|.
T Consensus 248 qG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk--~eel~L~~IkQlyv~C~~~~~K~~~l~~ly 325 (477)
T KOG0332|consen 248 QGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILK--REELALDNIKQLYVLCACRDDKYQALVNLY 325 (477)
T ss_pred ccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeee--hhhccccchhhheeeccchhhHHHHHHHHH
Confidence 589999999999999999999999999999999999999999888775 455567888888887765 47899988866
Q ss_pred HHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEe
Q 011113 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (493)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~ 161 (493)
... .-+++||||.|++.|..|+..|.. +..|..+||+|.-++|..++++|+.|+.+|||+|+|++||||++.|++|||
T Consensus 326 g~~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN 404 (477)
T KOG0332|consen 326 GLL-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN 404 (477)
T ss_pred hhh-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe
Confidence 554 347999999999999999999985 899999999999999999999999999999999999999999999999999
Q ss_pred CCCCC------ChhHHHHHhhccCCCCCcceEEEecChh-hHHHHHHHHHHhCCCceeeCCCCHHHH
Q 011113 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSPPVVEDV 221 (493)
Q Consensus 162 ~~~p~------~~~~y~qr~GR~gR~g~~g~~i~l~~~~-e~~~~~~l~~~~~~~~~~~~~p~~~~~ 221 (493)
||+|. +.++|+||+|||||.|++|.++-|+... ....+..|++++..++..+.+...+++
T Consensus 405 ydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E~ 471 (477)
T KOG0332|consen 405 YDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDEL 471 (477)
T ss_pred cCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHHH
Confidence 99995 7899999999999999999999998765 456788999999988888776544443
No 22
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-34 Score=288.66 Aligned_cols=201 Identities=41% Similarity=0.660 Sum_probs=176.9
Q ss_pred CCC-CcHHHHHHHHHHhCCC----CCcEEEEeccCChHHHHHHHHhcCC-CceEEeccccccccccceEEEEEEcCcccH
Q 011113 1 MLA-VGFEEDVELILENLPP----KRQSMLFSATMPSWVKKLSRKYLDN-PLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (493)
Q Consensus 1 mL~-~GF~~~l~~Il~~~~~----~~q~ll~SAT~p~~v~~l~~~~l~~-~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (493)
||| |||.++|++|+.++.. ++|++|||||.|+.+..++..|+.+ ...+.+. .......++.+..+.+....|
T Consensus 238 MlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~--rvg~~~~ni~q~i~~V~~~~k 315 (482)
T KOG0335|consen 238 MLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVG--RVGSTSENITQKILFVNEMEK 315 (482)
T ss_pred hhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEe--eeccccccceeEeeeecchhh
Confidence 899 9999999999998753 7999999999999999999999886 4444443 344567788888999998888
Q ss_pred HHHHHHHHHHHc---CCC-----eEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011113 75 RTILSDLITVYA---KGG-----KTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 75 ~~~l~~ll~~~~---~~~-----~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
...|.+++.... ... +++|||+|++.|++|+..|.. .+++..+|++.+|.+|++.++.|++|++.+||||+
T Consensus 316 r~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~ 395 (482)
T KOG0335|consen 316 RSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATN 395 (482)
T ss_pred HHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEeh
Confidence 888888876543 233 899999999999999999985 89999999999999999999999999999999999
Q ss_pred cccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHH
Q 011113 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (493)
Q Consensus 146 ~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~ 203 (493)
|++||||||+|+||||||+|.+..+|+||+|||||+|..|.++.|+........+.|-
T Consensus 396 VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~ 453 (482)
T KOG0335|consen 396 VAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALV 453 (482)
T ss_pred hhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHH
Confidence 9999999999999999999999999999999999999999999999965554444443
No 23
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-32 Score=269.01 Aligned_cols=206 Identities=26% Similarity=0.475 Sum_probs=188.7
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (493)
||..||.+||..|.+++|+..|.+|||||+.++|..+.+.++++|+.+.+.... ...+..+.||++.|...+|..++..
T Consensus 182 llsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~e-l~~~dqL~Qy~v~cse~DKflllya 260 (569)
T KOG0346|consen 182 LLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGE-LPNPDQLTQYQVKCSEEDKFLLLYA 260 (569)
T ss_pred hhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEecccc-CCCcccceEEEEEeccchhHHHHHH
Confidence 678999999999999999999999999999999999999999999998876543 3356889999999999999999999
Q ss_pred HHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc--------------
Q 011113 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-------------- 145 (493)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-------------- 145 (493)
+++..--.+++|||+||.+.|..|...|+. +++.++|.+.||..-|..++++|..|.++||||||
T Consensus 261 llKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kg 340 (569)
T KOG0346|consen 261 LLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKG 340 (569)
T ss_pred HHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccc
Confidence 988766679999999999999999999987 89999999999999999999999999999999999
Q ss_pred ---------------------cccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHH
Q 011113 146 ---------------------VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (493)
Q Consensus 146 ---------------------~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (493)
-++||||+..|..|||||+|.++.+|+||+|||+|++++|.++.|+.|.+..-...||+
T Consensus 341 k~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~ 420 (569)
T KOG0346|consen 341 KSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLES 420 (569)
T ss_pred cccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHH
Confidence 24699999999999999999999999999999999999999999999999875566655
Q ss_pred HhC
Q 011113 205 DVG 207 (493)
Q Consensus 205 ~~~ 207 (493)
.+.
T Consensus 421 ~~~ 423 (569)
T KOG0346|consen 421 ILK 423 (569)
T ss_pred HHh
Confidence 543
No 24
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.5e-32 Score=289.12 Aligned_cols=204 Identities=28% Similarity=0.458 Sum_probs=179.6
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (493)
|+++||.+++..|+..++ +.|+++||||+|+.+..+++.++.++..|.+.. .......+.+..+.+....|...|.+
T Consensus 282 ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~--~~~~~~~v~q~~~~~~~~~k~~~l~~ 358 (518)
T PLN00206 282 MLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGN--PNRPNKAVKQLAIWVETKQKKQKLFD 358 (518)
T ss_pred HhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCcceeEEEEeccchhHHHHHHH
Confidence 689999999999999986 689999999999999999999999888777642 23344567777777777777777777
Q ss_pred HHHHHcC-CCeEEEEeCChHHHHHHHHHHHc--cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCcc
Q 011113 81 LITVYAK-GGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (493)
Q Consensus 81 ll~~~~~-~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~ 157 (493)
++..... ..++||||+|+..++.++..|.. .+.+..+||+|++.+|..+++.|++|+++|||||++++||||+|+|+
T Consensus 359 ~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~ 438 (518)
T PLN00206 359 ILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVR 438 (518)
T ss_pred HHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCC
Confidence 7765432 35899999999999999999974 78899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhC
Q 011113 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (493)
Q Consensus 158 ~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~ 207 (493)
+|||||+|.+.++|+||+|||||.|..|.+++|+++.+...+..|.+.+.
T Consensus 439 ~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~ 488 (518)
T PLN00206 439 QVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLK 488 (518)
T ss_pred EEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988877777766554
No 25
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=6.6e-32 Score=282.34 Aligned_cols=208 Identities=31% Similarity=0.540 Sum_probs=183.8
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCCh-HHHHHHHHhcCCCceEEeccccccccccceEEEEEEcC-cccHHHHH
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPS-WVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSKRTIL 78 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~-~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l 78 (493)
||++||..+++.|...++...|+++||||++. .+..+...++.+|..+.+... ......+.+++..+. ...|..+|
T Consensus 159 ~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~~k~~~l 236 (434)
T PRK11192 159 MLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPS--RRERKKIHQWYYRADDLEHKTALL 236 (434)
T ss_pred HhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCC--cccccCceEEEEEeCCHHHHHHHH
Confidence 68999999999999999999999999999985 688889888999988876532 233455666666554 35688888
Q ss_pred HHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCcc
Q 011113 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (493)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~ 157 (493)
..+++.. ...++||||+|++.|+.++..|.. .+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|+
T Consensus 237 ~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~ 315 (434)
T PRK11192 237 CHLLKQP-EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVS 315 (434)
T ss_pred HHHHhcC-CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCC
Confidence 8877643 457999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCce
Q 011113 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (493)
Q Consensus 158 ~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~ 211 (493)
+|||||+|.+.+.|+||+|||||+|..|.+++|++..+...+..+++++..++.
T Consensus 316 ~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~ 369 (434)
T PRK11192 316 HVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLK 369 (434)
T ss_pred EEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999988776554
No 26
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=7.9e-32 Score=266.49 Aligned_cols=197 Identities=35% Similarity=0.569 Sum_probs=175.7
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEE-EcCcccHHHHHH
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAI-STTATSKRTILS 79 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~-~~~~~~k~~~l~ 79 (493)
|.+|||+.+++.|..++.+++|+|+||||++..|..+++.+|.+|+.|... ........|.|.+. +.....|+..|.
T Consensus 382 mfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg--~vgean~dITQ~V~V~~s~~~Kl~wl~ 459 (731)
T KOG0339|consen 382 MFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQG--EVGEANEDITQTVSVCPSEEKKLNWLL 459 (731)
T ss_pred hhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEe--ehhccccchhheeeeccCcHHHHHHHH
Confidence 889999999999999999999999999999999999999999999876443 22333455655444 445567888887
Q ss_pred HHHHHHcCCCeEEEEeCChHHHHHHHHHHH-ccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccE
Q 011113 80 DLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (493)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~ 158 (493)
.-|......+++|||+..+..+++|+..|. +.+.+..+||+|.|.+|.+++..|+.....||||||+++||+|||++..
T Consensus 460 ~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikT 539 (731)
T KOG0339|consen 460 RHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKT 539 (731)
T ss_pred HHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccce
Confidence 777666677899999999999999999998 5899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHH
Q 011113 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 199 (493)
Q Consensus 159 VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~ 199 (493)
|||||+-.+++.|+||+|||||+|..|++|+|+++.+..+.
T Consensus 540 VvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fA 580 (731)
T KOG0339|consen 540 VVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFA 580 (731)
T ss_pred eecccccchhHHHHHHhhhcccccccceeeEEechhhHHHh
Confidence 99999999999999999999999999999999999886543
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.98 E-value=4.9e-31 Score=278.49 Aligned_cols=208 Identities=34% Similarity=0.582 Sum_probs=185.1
Q ss_pred CCCCcHHHHHHHHHHhCCC--CCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHH
Q 011113 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~--~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l 78 (493)
|++++|..++..|+..++. ++|+++||||++..+.++++.|+.+|..+.+... ......+.+....+...++..+|
T Consensus 249 l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~k~~~l 326 (475)
T PRK01297 249 MLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPE--NVASDTVEQHVYAVAGSDKYKLL 326 (475)
T ss_pred HHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccC--cCCCCcccEEEEEecchhHHHHH
Confidence 4688999999999999975 5799999999999999999999999988766532 23334556666666677888888
Q ss_pred HHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCcc
Q 011113 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (493)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~ 157 (493)
..++... ...++||||++++.|+.+++.|.+ .+.+..+||++++++|.++++.|++|+++|||||+++++|||||+++
T Consensus 327 ~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~ 405 (475)
T PRK01297 327 YNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGIS 405 (475)
T ss_pred HHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCC
Confidence 8887653 457999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCce
Q 011113 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (493)
Q Consensus 158 ~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~ 211 (493)
+||+|++|.+.++|+||+||+||.|+.|.+++|+.+.|...+..+++.++.+++
T Consensus 406 ~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 406 HVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred EEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999999999999999999987764
No 28
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.3e-31 Score=266.81 Aligned_cols=207 Identities=30% Similarity=0.481 Sum_probs=176.5
Q ss_pred CCCCcHHHHHHHHHHhC-------------CCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccc------------
Q 011113 1 MLAVGFEEDVELILENL-------------PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQD------------ 55 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~-------------~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~------------ 55 (493)
+||+||.++|+.|++.+ |+..|.+|+||||.+.|.+++...|+||+.|.+.....
T Consensus 299 lleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev 378 (708)
T KOG0348|consen 299 LLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEV 378 (708)
T ss_pred HHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhc
Confidence 58999999999999876 33589999999999999999999999999987221000
Q ss_pred -----------cccccceEEEEEEcCcccHHHHHHHHHHHH---cCCCeEEEEeCChHHHHHHHHHHHcc----------
Q 011113 56 -----------EKLAEGIKLYAISTTATSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI---------- 111 (493)
Q Consensus 56 -----------~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~~---------- 111 (493)
-.++..+.+.|..++..-++-.|..+|... .+..++|||+.+.+.++.-+..|...
T Consensus 379 ~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~ 458 (708)
T KOG0348|consen 379 DDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSG 458 (708)
T ss_pred CCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccC
Confidence 113455677888888888877777766544 23469999999999999888877531
Q ss_pred -------------CceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhcc
Q 011113 112 -------------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178 (493)
Q Consensus 112 -------------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~ 178 (493)
..+..|||.|+|++|..+++.|+...-.||+||||++||||+|+|.+||+||+|.++++|+||+|||
T Consensus 459 ~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRT 538 (708)
T KOG0348|consen 459 APDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRT 538 (708)
T ss_pred CcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhh
Confidence 2467899999999999999999998888999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEEecChhhHHHHHHHHHHhC
Q 011113 179 GRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (493)
Q Consensus 179 gR~g~~g~~i~l~~~~e~~~~~~l~~~~~ 207 (493)
+|+|..|.+++|+.|.|.++++.|+.+..
T Consensus 539 ARaG~kG~alLfL~P~Eaey~~~l~~~~~ 567 (708)
T KOG0348|consen 539 ARAGEKGEALLFLLPSEAEYVNYLKKHHI 567 (708)
T ss_pred hhccCCCceEEEecccHHHHHHHHHhhcc
Confidence 99999999999999999999988877643
No 29
>PTZ00424 helicase 45; Provisional
Probab=99.97 E-value=2.5e-30 Score=267.86 Aligned_cols=213 Identities=33% Similarity=0.590 Sum_probs=184.5
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCc-ccHHHHHH
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILS 79 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~ 79 (493)
|++.+|...+.++++.++++.|++++|||+|+++..+...++.+|..+.+.. .......+.++++.+.. ..+...+.
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKK--DELTLEGIRQFYVAVEKEEWKFDTLC 259 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCC--CCcccCCceEEEEecChHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999888765432 22234556666665544 34566666
Q ss_pred HHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccE
Q 011113 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (493)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~ 158 (493)
.+++.. ...++||||+|++.++.+++.|.. .+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++
T Consensus 260 ~~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~ 338 (401)
T PTZ00424 260 DLYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSL 338 (401)
T ss_pred HHHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCE
Confidence 666543 457899999999999999999985 789999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCC
Q 011113 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (493)
Q Consensus 159 VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (493)
||+|++|.+..+|+||+||+||.|+.|.|++|+++.+...++.+++.+...++..++.
T Consensus 339 VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~ 396 (401)
T PTZ00424 339 VINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPME 396 (401)
T ss_pred EEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcc
Confidence 9999999999999999999999999999999999999999999999998887765543
No 30
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.4e-31 Score=267.25 Aligned_cols=224 Identities=33% Similarity=0.518 Sum_probs=182.2
Q ss_pred CCCCcHHHHHHHHHHhCC-----CCCcEEEEeccCCh---------------------HHHHHHHH--hcCCCceEEecc
Q 011113 1 MLAVGFEEDVELILENLP-----PKRQSMLFSATMPS---------------------WVKKLSRK--YLDNPLNIDLVG 52 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~-----~~~q~ll~SAT~p~---------------------~v~~l~~~--~l~~~~~i~~~~ 52 (493)
|++-|..+++..||..+. ..+|++.||||+.- .|+.++++ +...|.+|++..
T Consensus 352 mvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~ 431 (731)
T KOG0347|consen 352 MVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTP 431 (731)
T ss_pred HhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCc
Confidence 788999999999999885 46899999999832 12223333 223567777652
Q ss_pred ccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHh
Q 011113 53 NQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLN 131 (493)
Q Consensus 53 ~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~ 131 (493)
...+...+....+.|+..+|.-.|..+|..| ++++|||||+.+.+..|+-+|.. .+....||+.|.|.+|.+.++
T Consensus 432 --q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLE 507 (731)
T KOG0347|consen 432 --QSATASTLTESLIECPPLEKDLYLYYFLTRY--PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLE 507 (731)
T ss_pred --chhHHHHHHHHhhcCCccccceeEEEEEeec--CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHH
Confidence 3334444545555666666665555556554 68999999999999999999987 899999999999999999999
Q ss_pred cccCCCEEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCce
Q 011113 132 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (493)
Q Consensus 132 ~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~ 211 (493)
+|++....|||||||||||||||.|+|||||.+|.+.+.|+||+|||+|++..|..++|+.|.+...+++|.+.+..+.+
T Consensus 508 kF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 508 KFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKED 587 (731)
T ss_pred HHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988887766
Q ss_pred eeCCCCHHHHHHHHHHH
Q 011113 212 FVSPPVVEDVLESSAEQ 228 (493)
Q Consensus 212 ~~~~p~~~~~~~~~~~~ 228 (493)
....|..+.++....++
T Consensus 588 lpifPv~~~~m~~lkeR 604 (731)
T KOG0347|consen 588 LPIFPVETDIMDALKER 604 (731)
T ss_pred CCceeccHHHHHHHHHH
Confidence 54456566666554444
No 31
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.4e-30 Score=276.93 Aligned_cols=204 Identities=36% Similarity=0.597 Sum_probs=188.7
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcC-cccHHHHHH
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSKRTILS 79 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~ 79 (493)
|+||||.+++..|++++++.+|+++||||+|..+..++.+.++.|+.|.+- ........+++.+..++ ...|..-|.
T Consensus 527 mfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~--~~svV~k~V~q~v~V~~~e~eKf~kL~ 604 (997)
T KOG0334|consen 527 MFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVG--GRSVVCKEVTQVVRVCAIENEKFLKLL 604 (997)
T ss_pred hheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEc--cceeEeccceEEEEEecCchHHHHHHH
Confidence 789999999999999999999999999999999999999999988887654 34456677777777777 788999999
Q ss_pred HHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccE
Q 011113 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (493)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~ 158 (493)
.||..+....++||||...+.|+.+...|.+ ++.+..|||+.+|.+|..+++.|+++.+.+||||++++||||++++.+
T Consensus 605 eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~L 684 (997)
T KOG0334|consen 605 ELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELIL 684 (997)
T ss_pred HHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceE
Confidence 9998887889999999999999999999986 889999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHh
Q 011113 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (493)
Q Consensus 159 VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~ 206 (493)
|||||+|...+.|+||+|||||+|++|.|++|+++.+..+.-.|.+.+
T Consensus 685 vvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 685 VVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred EEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 999999999999999999999999999999999998888888887777
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.96 E-value=1.9e-28 Score=268.90 Aligned_cols=240 Identities=20% Similarity=0.286 Sum_probs=174.8
Q ss_pred HHHHHHHHH-------HhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcC--------
Q 011113 6 FEEDVELIL-------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-------- 70 (493)
Q Consensus 6 F~~~l~~Il-------~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~-------- 70 (493)
|..++..++ ...+.++|+|+||||+++... +++.++..|..+ +.. .........+..+...
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~--~~~~~~~~~~~~~~p~~~~~~~~~ 248 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTE--DGSPRGARTVALWEPPLTELTGEN 248 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECC--CCCCcCceEEEEecCCcccccccc
Confidence 555544444 345678999999999998865 677777777543 221 1111112222222211
Q ss_pred --------cccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc---------cCceEEEeCCCCHHHHHHHHhcc
Q 011113 71 --------ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGF 133 (493)
Q Consensus 71 --------~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~---------~~~~~~lhg~~~~~~r~~~~~~F 133 (493)
...+..++..+++ .+.++||||+|++.|+.++..|.+ ...+..+|+++++++|.+++++|
T Consensus 249 ~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f 325 (742)
T TIGR03817 249 GAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERAL 325 (742)
T ss_pred ccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHH
Confidence 1123444444443 467999999999999999998764 24678999999999999999999
Q ss_pred cCCCEEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecC--hhhHHHHHHHHHHhCCCce
Q 011113 134 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT--SSQRRTVRSLERDVGCKFE 211 (493)
Q Consensus 134 ~~g~~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~--~~e~~~~~~l~~~~~~~~~ 211 (493)
++|++++|||||++++|||||++++||||++|.+.++|+||+|||||.|+.|.+++++. +.|...+..+++.+..+++
T Consensus 326 ~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e 405 (742)
T TIGR03817 326 RDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVE 405 (742)
T ss_pred HcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999986 5677788888888888877
Q ss_pred ee-CCCCHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHHHh
Q 011113 212 FV-SPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIE 253 (493)
Q Consensus 212 ~~-~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 253 (493)
.. ..|....++..++..+...+ .+..++.+.|.+...++++
T Consensus 406 ~~~~~~~n~~il~~hl~~aa~e~-~l~~~~~~~~~~~~~~~~~ 447 (742)
T TIGR03817 406 ATVFDPDNPYVLGPHLCCAAAEL-PLTEADLELFGPAAAEVLD 447 (742)
T ss_pred cceeCCCcHHHHHHHHHHHHhcC-CCChHHHHhhchhHHHHHH
Confidence 64 33566667776666555444 3444444444433333333
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.3e-29 Score=246.20 Aligned_cols=212 Identities=33% Similarity=0.484 Sum_probs=196.7
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (493)
+++|||.+++.+|+..+|..+|+++||||+|..+.++++.-+.+|..|.+. .+.++...+++.+..+...+|...|..
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRld--vetkise~lk~~f~~~~~a~K~aaLl~ 253 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLD--VETKISELLKVRFFRVRKAEKEAALLS 253 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEee--hhhhcchhhhhheeeeccHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999988764 345667788888889999999999999
Q ss_pred HHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEE
Q 011113 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (493)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~V 159 (493)
++.....+.++||||.|+..|+.+...|.. ++.+..+++.|++..|...+.+|+.++..+||.||+++||+|||-.+.|
T Consensus 254 il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnv 333 (529)
T KOG0337|consen 254 ILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNV 333 (529)
T ss_pred HHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccc
Confidence 998776678999999999999999999985 8999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeC
Q 011113 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (493)
Q Consensus 160 I~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (493)
||||+|.+...|+||+||+.|+|++|.+|.++.+.+..++-.|...++..+....
T Consensus 334 inyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~ 388 (529)
T KOG0337|consen 334 INYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAI 388 (529)
T ss_pred ccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeecc
Confidence 9999999999999999999999999999999999999999999999888765543
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.96 E-value=2.7e-28 Score=247.32 Aligned_cols=196 Identities=28% Similarity=0.502 Sum_probs=171.3
Q ss_pred CcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcc--------cHH
Q 011113 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT--------SKR 75 (493)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~--------~k~ 75 (493)
--|+++|..|+..+|..+|+++||||.|..+..++.+||++|..|..... ......|++|+...+.. .|+
T Consensus 183 ~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~--d~~L~GikQyv~~~~s~nnsveemrlkl 260 (980)
T KOG4284|consen 183 ESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNAD--DVQLFGIKQYVVAKCSPNNSVEEMRLKL 260 (980)
T ss_pred hhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccC--CceeechhheeeeccCCcchHHHHHHHH
Confidence 45999999999999999999999999999999999999999999987643 23345677777655432 266
Q ss_pred HHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCC
Q 011113 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (493)
Q Consensus 76 ~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip 154 (493)
+.|.++++.+ +-.++||||+....|+.++.+|.. ++.|.++.|.|+|.+|..+++.+++-.++|||+||+.+||||-+
T Consensus 261 q~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~ 339 (980)
T KOG4284|consen 261 QKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDAD 339 (980)
T ss_pred HHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCcc
Confidence 6777777665 457899999999999999999995 99999999999999999999999999999999999999999999
Q ss_pred CccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhH-HHHHHH
Q 011113 155 NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR-RTVRSL 202 (493)
Q Consensus 155 ~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~-~~~~~l 202 (493)
+|++|||.|+|.+.++|.||+|||||.|..|.+++|+...+. ..+..+
T Consensus 340 ~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 340 NVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred ccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 999999999999999999999999999999999999876543 443334
No 35
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.95 E-value=2.9e-27 Score=259.36 Aligned_cols=200 Identities=19% Similarity=0.262 Sum_probs=155.5
Q ss_pred CCCCc--HHHHHHHH--HHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHH
Q 011113 1 MLAVG--FEEDVELI--LENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT 76 (493)
Q Consensus 1 mL~~G--F~~~l~~I--l~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 76 (493)
|++.| |+++...| +....++.|+++||||++..+.+.+.+.+.-...+.+.. ... ..++.+. +.........
T Consensus 593 VSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~-Sf~--RpNL~y~-Vv~k~kk~le 668 (1195)
T PLN03137 593 VSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ-SFN--RPNLWYS-VVPKTKKCLE 668 (1195)
T ss_pred hhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec-ccC--ccceEEE-EeccchhHHH
Confidence 34566 88888764 455556889999999999998886666665332222221 111 1233222 2222222234
Q ss_pred HHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCC
Q 011113 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155 (493)
Q Consensus 77 ~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~ 155 (493)
.|..++.......+.||||+|++.|+.+++.|.. ++.+..+|++|++++|..++++|++++++|||||+++++|||+|+
T Consensus 669 ~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPD 748 (1195)
T PLN03137 669 DIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPD 748 (1195)
T ss_pred HHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccC
Confidence 4555554433356899999999999999999985 899999999999999999999999999999999999999999999
Q ss_pred ccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHH
Q 011113 156 VDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (493)
Q Consensus 156 v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (493)
|++||||++|.+++.|+||+|||||.|.++.|++|+...|...++.+..
T Consensus 749 VR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 749 VRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred CcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988777766653
No 36
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=4.8e-27 Score=247.40 Aligned_cols=196 Identities=24% Similarity=0.395 Sum_probs=153.4
Q ss_pred CCCc--HHHHHHHH---HHhCCCCCcEEEEeccCChHHHHHHHHhcC--CCceEEeccccccccccceEEEEEEcCcccH
Q 011113 2 LAVG--FEEDVELI---LENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (493)
Q Consensus 2 L~~G--F~~~l~~I---l~~~~~~~q~ll~SAT~p~~v~~l~~~~l~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (493)
++.| |+.++..| ...+ ++.|+++||||+++.+...+.+.+. +|..+... .. ..++. +.+.......
T Consensus 140 ~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s---~~--r~nl~-~~v~~~~~~~ 212 (470)
T TIGR00614 140 SQWGHDFRPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTS---FD--RPNLY-YEVRRKTPKI 212 (470)
T ss_pred CccccccHHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC---CC--CCCcE-EEEEeCCccH
Confidence 3444 78776654 3344 5789999999999988776666543 45443321 11 12222 2222222234
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCC
Q 011113 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (493)
Q Consensus 75 ~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi 153 (493)
...+..++....+..++||||+|++.|+.+++.|.. ++.+..+|++|++++|+.+++.|++++++|||||+++++|||+
T Consensus 213 ~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~ 292 (470)
T TIGR00614 213 LEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINK 292 (470)
T ss_pred HHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCc
Confidence 444445554333556779999999999999999985 8999999999999999999999999999999999999999999
Q ss_pred CCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHH
Q 011113 154 PNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (493)
Q Consensus 154 p~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (493)
|+|++||||++|.+++.|+||+|||||.|.++.|++|+++.+...++.+..
T Consensus 293 p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 293 PDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred ccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998887777644
No 37
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=4.2e-27 Score=238.29 Aligned_cols=202 Identities=29% Similarity=0.459 Sum_probs=174.1
Q ss_pred CCC-cHHHHHHHHHHhCC-CCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEE-EcCcccHHHHH
Q 011113 2 LAV-GFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAI-STTATSKRTIL 78 (493)
Q Consensus 2 L~~-GF~~~l~~Il~~~~-~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~-~~~~~~k~~~l 78 (493)
++. .|.+++..|++.+. ++..+-+||||+|..|+++++..+.++..|.+-. .+.....+.|..+ +.....|+.++
T Consensus 301 fe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~--~~sa~~~V~QelvF~gse~~K~lA~ 378 (593)
T KOG0344|consen 301 FEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGL--RNSANETVDQELVFCGSEKGKLLAL 378 (593)
T ss_pred hChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEec--chhHhhhhhhhheeeecchhHHHHH
Confidence 344 89999999998875 5677889999999999999999998888776542 2223445555444 44555788888
Q ss_pred HHHHHHHcCCCeEEEEeCChHHHHHHHHHHH--ccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCc
Q 011113 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 156 (493)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~--~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v 156 (493)
.+++..- -..++|||+.+.+.|.+|++.|. ..+.+.++||..++.+|++++++||.|+++|||||++++||||+.+|
T Consensus 379 rq~v~~g-~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gv 457 (593)
T KOG0344|consen 379 RQLVASG-FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGV 457 (593)
T ss_pred HHHHhcc-CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCc
Confidence 8888764 45799999999999999999994 47899999999999999999999999999999999999999999999
Q ss_pred cEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHh
Q 011113 157 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (493)
Q Consensus 157 ~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~ 206 (493)
++|||||+|.+..+|+||+||+||+|+.|.+|+||+..+..+++.++...
T Consensus 458 n~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~ 507 (593)
T KOG0344|consen 458 NLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVM 507 (593)
T ss_pred ceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHH
Confidence 99999999999999999999999999999999999999988888876654
No 38
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.94 E-value=8.8e-26 Score=242.73 Aligned_cols=181 Identities=18% Similarity=0.286 Sum_probs=141.2
Q ss_pred HHHHHHHHhCC-CCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCc----------ccHHH
Q 011113 8 EDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA----------TSKRT 76 (493)
Q Consensus 8 ~~l~~Il~~~~-~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~----------~~k~~ 76 (493)
+.+..+++.++ ..+|+++||||+|.++..+ ++|+++|..|.+.+ .+...++++++.... ..+..
T Consensus 308 DllL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g----rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~ 382 (675)
T PHA02653 308 DIIIAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG----GTLFPISEVYVKNKYNPKNKRAYIEEEKKN 382 (675)
T ss_pred hHHHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC----CcCCCeEEEEeecCcccccchhhhHHHHHH
Confidence 44556665553 4469999999999988877 57999998887642 233456666664331 12333
Q ss_pred HHHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHc---cCceEEEeCCCCHHHHHHHHhcc-cCCCEEEEEecccccccC
Q 011113 77 ILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGF-RQGKFTVLVATDVAARGL 151 (493)
Q Consensus 77 ~l~~ll~~~~-~~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~r~~~~~~F-~~g~~~iLVaT~~~~~Gi 151 (493)
++..+..... ..+++||||+++++++.+++.|.+ .+.+..|||+|++. ++++++| ++++.+||||||++++||
T Consensus 383 ~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGI 460 (675)
T PHA02653 383 IVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSV 460 (675)
T ss_pred HHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccc
Confidence 3333332221 346899999999999999999985 47899999999985 4667777 789999999999999999
Q ss_pred CCCCccEEEeCC---CCC---------ChhHHHHHhhccCCCCCcceEEEecChhhH
Q 011113 152 DIPNVDLIIHYE---LPN---------DPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (493)
Q Consensus 152 dip~v~~VI~~~---~p~---------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (493)
|||+|++||+++ .|. +.++|+||+|||||. ++|.|+.|+++.+.
T Consensus 461 DIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 461 TIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred cccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 999999999998 565 888999999999999 89999999998774
No 39
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.94 E-value=3.2e-26 Score=251.53 Aligned_cols=186 Identities=18% Similarity=0.272 Sum_probs=146.4
Q ss_pred CCCCcHHHH-HHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHH----
Q 011113 1 MLAVGFEED-VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR---- 75 (493)
Q Consensus 1 mL~~GF~~~-l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~---- 75 (493)
||+..|.-. +.+|.+.++++.|+|+||||++... ..+|+.++..|.+.+. ...++++|+.....++.
T Consensus 126 ~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr-----~~pVe~~y~~~~~~~~~~~~v 197 (819)
T TIGR01970 126 SLDADLGLALALDVQSSLREDLKILAMSATLDGER---LSSLLPDAPVVESEGR-----SFPVEIRYLPLRGDQRLEDAV 197 (819)
T ss_pred hhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH---HHHHcCCCcEEEecCc-----ceeeeeEEeecchhhhHHHHH
Confidence 355555332 3456667888999999999998763 4678887777765432 12356667665544332
Q ss_pred -HHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccccccc
Q 011113 76 -TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (493)
Q Consensus 76 -~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~G 150 (493)
..+..+++. ..+++|||++++.+++.+++.|.+ .+.+..+||+|++++|.++++.|++|+.+||||||++++|
T Consensus 198 ~~~l~~~l~~--~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErg 275 (819)
T TIGR01970 198 SRAVEHALAS--ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETS 275 (819)
T ss_pred HHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhc
Confidence 223333322 357899999999999999999985 5789999999999999999999999999999999999999
Q ss_pred CCCCCccEEEeCCCCC------------------ChhHHHHHhhccCCCCCcceEEEecChhhHH
Q 011113 151 LDIPNVDLIIHYELPN------------------DPETFVHRSGRTGRAGKEGTAILMFTSSQRR 197 (493)
Q Consensus 151 idip~v~~VI~~~~p~------------------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~ 197 (493)
||||+|++|||+++|. +.++|+||+|||||. ++|.||.|+++.+..
T Consensus 276 ItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 276 LTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred ccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 9999999999999875 345699999999999 899999999987654
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.94 E-value=8.8e-26 Score=244.20 Aligned_cols=189 Identities=20% Similarity=0.375 Sum_probs=147.9
Q ss_pred HHHHHHHH---HHhCCCCCcEEEEeccCChHHHHHHHHhcC--CCceEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011113 6 FEEDVELI---LENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (493)
Q Consensus 6 F~~~l~~I---l~~~~~~~q~ll~SAT~p~~v~~l~~~~l~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (493)
|+.++..| .+.+ ++.|+++||||+++.+...+...+. +|... +.. .. ..++. +.......+...+..
T Consensus 158 fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~--~~--r~nl~--~~v~~~~~~~~~l~~ 229 (607)
T PRK11057 158 FRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS--FD--RPNIR--YTLVEKFKPLDQLMR 229 (607)
T ss_pred ccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECC--CC--CCcce--eeeeeccchHHHHHH
Confidence 77665544 4444 4789999999999987665544443 44322 221 11 12222 222222234444444
Q ss_pred HHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEE
Q 011113 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (493)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~V 159 (493)
++... ...++||||+|+++|+.+++.|.. ++.+..+|++|++++|.++++.|++++++|||||+++++|||+|+|++|
T Consensus 230 ~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~V 308 (607)
T PRK11057 230 YVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFV 308 (607)
T ss_pred HHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEE
Confidence 55433 567999999999999999999985 7999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHH
Q 011113 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (493)
Q Consensus 160 I~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~ 203 (493)
|||++|.+.++|+||+|||||.|.++.|++|+++.+...++.+.
T Consensus 309 I~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877776654
No 41
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.93 E-value=1.8e-25 Score=246.23 Aligned_cols=230 Identities=18% Similarity=0.239 Sum_probs=165.8
Q ss_pred HHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHH-----HHHHHHHHH
Q 011113 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-----ILSDLITVY 85 (493)
Q Consensus 11 ~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-----~l~~ll~~~ 85 (493)
.+|++.++++.|+|+||||++.. ...+|+.++..|.+.+. ...++++|+..+...+.+ ++..++..
T Consensus 140 ~~i~~~lr~~lqlilmSATl~~~---~l~~~~~~~~~I~~~gr-----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~- 210 (812)
T PRK11664 140 LDVQQGLRDDLKLLIMSATLDND---RLQQLLPDAPVIVSEGR-----SFPVERRYQPLPAHQRFDEAVARATAELLRQ- 210 (812)
T ss_pred HHHHHhCCccceEEEEecCCCHH---HHHHhcCCCCEEEecCc-----cccceEEeccCchhhhHHHHHHHHHHHHHHh-
Confidence 45667788899999999999875 23568877777765432 123666776665544442 23333322
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHc----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEe
Q 011113 86 AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (493)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~ 161 (493)
..+.+||||+++++++.+++.|.+ .+.+..+||+|++++|+++++.|++|+.+||||||++++|||||+|++|||
T Consensus 211 -~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 211 -ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred -CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEE
Confidence 358999999999999999999985 467899999999999999999999999999999999999999999999999
Q ss_pred CCCCC------------------ChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCCCHHHHHH
Q 011113 162 YELPN------------------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 223 (493)
Q Consensus 162 ~~~p~------------------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~ 223 (493)
+++|. |.++|+||+|||||. .+|.||.|+++.+...+ .. -...|++.
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~l---~~-----------~~~PEI~r 354 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAERA---AA-----------QSEPEILH 354 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhhC---cc-----------CCCCceec
Confidence 88764 346899999999999 69999999998765321 11 11223444
Q ss_pred HHHHHHHHHhcCCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCC
Q 011113 224 SSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGF 270 (493)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~aal~~~~~~ 270 (493)
..+..++-.+......+...| .+++....+++.+|+..|..+
T Consensus 355 ~dL~~~~L~l~~~g~~~~~~~-----~~ld~P~~~~~~~A~~~L~~l 396 (812)
T PRK11664 355 SDLSGLLLELLQWGCHDPAQL-----SWLDQPPAAALAAAKRLLQQL 396 (812)
T ss_pred cchHHHHHHHHHcCCCCHHhC-----CCCCCCCHHHHHHHHHHHHHC
Confidence 444444444444332222222 344556666777766666533
No 42
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.93 E-value=3.7e-25 Score=239.47 Aligned_cols=183 Identities=21% Similarity=0.291 Sum_probs=140.8
Q ss_pred CCCcHHHHHHHHHHhC--CCC---CcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHH
Q 011113 2 LAVGFEEDVELILENL--PPK---RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT 76 (493)
Q Consensus 2 L~~GF~~~l~~Il~~~--~~~---~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 76 (493)
|+|||.++|+.|++.+ ++. +|+++||||+|.++.++++.++.++..+.+.. .......+.++ +.+....|..
T Consensus 182 Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~--~~l~a~ki~q~-v~v~~e~Kl~ 258 (844)
T TIGR02621 182 LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLK--KRLAAKKIVKL-VPPSDEKFLS 258 (844)
T ss_pred hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccc--ccccccceEEE-EecChHHHHH
Confidence 6899999999999975 443 69999999999999999888988887766542 22334455554 3333333443
Q ss_pred HHHH-HHHHH-cCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHH-----HHHhcccC----CC-------
Q 011113 77 ILSD-LITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRE-----RTLNGFRQ----GK------- 137 (493)
Q Consensus 77 ~l~~-ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~-----~~~~~F~~----g~------- 137 (493)
.+.. +...+ ....++||||||++.|+.+++.|.+ .+ ..|||+|++.+|+ +++++|++ ++
T Consensus 259 ~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g 336 (844)
T TIGR02621 259 TMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQG 336 (844)
T ss_pred HHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhcccccccccccccc
Confidence 3222 22212 2457899999999999999999986 44 8999999999999 88999987 44
Q ss_pred EEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCc-ceEEEecC
Q 011113 138 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE-GTAILMFT 192 (493)
Q Consensus 138 ~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~-g~~i~l~~ 192 (493)
..|||||+++++||||+. ++||++..| .++|+||+||++|.|+. +..++++.
T Consensus 337 ~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 337 TVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred ceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEe
Confidence 689999999999999986 888887766 68999999999999975 34355553
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.92 E-value=4.2e-24 Score=231.40 Aligned_cols=190 Identities=23% Similarity=0.405 Sum_probs=152.1
Q ss_pred cHHHHHHHHH---HhCCCCCcEEEEeccCChHHHHHHHHhcC--CCceEEeccccccccccceEEEEEEcCcccHHHHHH
Q 011113 5 GFEEDVELIL---ENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (493)
Q Consensus 5 GF~~~l~~Il---~~~~~~~q~ll~SAT~p~~v~~l~~~~l~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 79 (493)
.|+.++..|. ..+| +.+++++|||+++.+...+..++. ++..+. .. .. ..++ ++.......+...+.
T Consensus 145 ~frp~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~--~~--r~nl--~~~v~~~~~~~~~l~ 216 (591)
T TIGR01389 145 DFRPEYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFI-TS--FD--RPNL--RFSVVKKNNKQKFLL 216 (591)
T ss_pred ccHHHHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cC--CC--CCCc--EEEEEeCCCHHHHHH
Confidence 3777666553 4444 556999999999998887777765 333221 11 11 1222 222223345666666
Q ss_pred HHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccE
Q 011113 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (493)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~ 158 (493)
+++... ...++||||+|++.|+.+++.|.. ++.+..+|++|++++|+.+++.|++++++|||||+++++|||+|+|++
T Consensus 217 ~~l~~~-~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~ 295 (591)
T TIGR01389 217 DYLKKH-RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRF 295 (591)
T ss_pred HHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCE
Confidence 666654 357899999999999999999985 789999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHH
Q 011113 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (493)
Q Consensus 159 VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~ 203 (493)
||||++|.+.++|+||+||+||.|.++.|++++++.+...++.+.
T Consensus 296 VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 296 VIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred EEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 999999999999999999999999999999999998887766654
No 44
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=2.3e-24 Score=213.77 Aligned_cols=191 Identities=28% Similarity=0.433 Sum_probs=161.4
Q ss_pred CCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccc--cccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEE
Q 011113 17 LPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGN--QDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVF 94 (493)
Q Consensus 17 ~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~--~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~IVF 94 (493)
+++..+-|+||||+...-..+...-++.|....+... ..-.++..+.++++.+....|.-.+..++... +-.++|+|
T Consensus 357 ~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf 435 (620)
T KOG0350|consen 357 LYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCF 435 (620)
T ss_pred cCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEE
Confidence 4556678999999977666676667778865544321 12335677888888888888888888888775 56899999
Q ss_pred eCChHHHHHHHHHHH-c----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCCCCCChh
Q 011113 95 TQTKRDADEVSLALT-S----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPE 169 (493)
Q Consensus 95 ~~t~~~~~~l~~~L~-~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~ 169 (493)
+++.+.+..++..|. . .+.+..+.|.+++..|.+.+++|..|+++||||||+++||||+.+|+.|||||+|.+..
T Consensus 436 ~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~k 515 (620)
T KOG0350|consen 436 VNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDK 515 (620)
T ss_pred ecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhh
Confidence 999999999999887 2 35677799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCC
Q 011113 170 TFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC 208 (493)
Q Consensus 170 ~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~ 208 (493)
+|+||+|||+|+|+.|.||+++...+.+.+.++.+....
T Consensus 516 tyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 516 TYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred HHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 999999999999999999999999998877777666544
No 45
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.91 E-value=2.1e-23 Score=237.81 Aligned_cols=253 Identities=23% Similarity=0.341 Sum_probs=167.3
Q ss_pred HHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcC--CCceEEeccccccccccceEEEEEEcCccc----------
Q 011113 6 FEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATS---------- 73 (493)
Q Consensus 6 F~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~---------- 73 (493)
|...|+.|...++.+.|+|+||||+++ ..+++ +|+. +++.| +.....+ ...++.. +......
T Consensus 145 Lel~LeRL~~l~~~~~QrIgLSATI~n-~eevA-~~L~g~~pv~I--v~~~~~r-~~~l~v~-vp~~d~~~~~~~~~~~~ 218 (1490)
T PRK09751 145 LALSLERLDALLHTSAQRIGLSATVRS-ASDVA-AFLGGDRPVTV--VNPPAMR-HPQIRIV-VPVANMDDVSSVASGTG 218 (1490)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEeeCCC-HHHHH-HHhcCCCCEEE--ECCCCCc-ccceEEE-EecCchhhccccccccc
Confidence 566788888888888999999999987 45555 4664 24433 2111111 1122221 2111100
Q ss_pred -----------HHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHccC------------------------------
Q 011113 74 -----------KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII------------------------------ 112 (493)
Q Consensus 74 -----------k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~------------------------------ 112 (493)
...+...++..+..+.++||||||+..|+.++..|++.+
T Consensus 219 ~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1490)
T PRK09751 219 EDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQS 298 (1490)
T ss_pred cccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhcccc
Confidence 011223445444456899999999999999999887421
Q ss_pred ----ceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCC-CCcceE
Q 011113 113 ----ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA-GKEGTA 187 (493)
Q Consensus 113 ----~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~-g~~g~~ 187 (493)
.+..+||+|++++|..+++.|++|++++||||+.+++||||++|++||||+.|.++.+|+||+||+||. +..+.+
T Consensus 299 ~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~g 378 (1490)
T PRK09751 299 SDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKG 378 (1490)
T ss_pred ccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEE
Confidence 256899999999999999999999999999999999999999999999999999999999999999995 334455
Q ss_pred EEecChhhHHHH---HHHHHHhCCCceeeCCCCH-HHHHHHHHHHHHHHhcCCCccchhhhHHHHHHH--HhhhCHHHHH
Q 011113 188 ILMFTSSQRRTV---RSLERDVGCKFEFVSPPVV-EDVLESSAEQVVATLNGVHPESVEFFTPTAQRL--IEEKGTDALA 261 (493)
Q Consensus 188 i~l~~~~e~~~~---~~l~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l--~~~~~~~~l~ 261 (493)
+++..... ..+ -.++.++...++.+.+|.. -+++..++-.++.. ..+. .+.+.+.+... +..++.+++.
T Consensus 379 li~p~~r~-dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~-~~~~---~d~l~~~vrra~pf~~L~~~~f~ 453 (1490)
T PRK09751 379 LFFPRTRR-DLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAM-DALQ---VDEWYSRVRRAAPWKDLPRRVFD 453 (1490)
T ss_pred EEEeCcHH-HHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhc-CCCC---HHHHHHHhhccCCcccCCHHHHH
Confidence 54433322 222 2367788888888766643 35665544443331 2222 22222222221 2345667777
Q ss_pred HHHHHHcC
Q 011113 262 AALAQLSG 269 (493)
Q Consensus 262 aal~~~~~ 269 (493)
+.|..|.+
T Consensus 454 ~vl~~L~~ 461 (1490)
T PRK09751 454 ATLDMLSG 461 (1490)
T ss_pred HHHHHHhc
Confidence 77777664
No 46
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=6.9e-23 Score=213.49 Aligned_cols=192 Identities=26% Similarity=0.400 Sum_probs=150.3
Q ss_pred HHHHHHHHH---HhCCCCCcEEEEeccCChHHHHHHHHhcC--CCceEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011113 6 FEEDVELIL---ENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (493)
Q Consensus 6 F~~~l~~Il---~~~~~~~q~ll~SAT~p~~v~~l~~~~l~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (493)
|+++...|- ..+| +.+++++|||.++.+.+-+.+.|. ++..+... .+ .+++........ ..+...+ -
T Consensus 150 FRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s---fd--RpNi~~~v~~~~-~~~~q~~-f 221 (590)
T COG0514 150 FRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGS---FD--RPNLALKVVEKG-EPSDQLA-F 221 (590)
T ss_pred cCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec---CC--Cchhhhhhhhcc-cHHHHHH-H
Confidence 777777664 3445 889999999999998887777665 33333221 11 122222222111 1222222 2
Q ss_pred HHH-HHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccE
Q 011113 81 LIT-VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (493)
Q Consensus 81 ll~-~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~ 158 (493)
+.+ ........||||.|++.|+.+++.|.. ++.+..+|++|+.++|+.+.++|.+++++|+|||.++.+|||-|+|.+
T Consensus 222 i~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRf 301 (590)
T COG0514 222 LATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRF 301 (590)
T ss_pred HHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceE
Confidence 221 123456789999999999999999996 799999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHH
Q 011113 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (493)
Q Consensus 159 VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~ 205 (493)
||||++|.++++|.|.+|||||.|.+..|++|+.+.|....+.+...
T Consensus 302 ViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 302 VIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred EEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999998777766544
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.90 E-value=7.4e-23 Score=227.33 Aligned_cols=192 Identities=18% Similarity=0.278 Sum_probs=149.3
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHHc
Q 011113 7 EEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA 86 (493)
Q Consensus 7 ~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~ 86 (493)
-.+..++++.++.+.|+|+||||+++....++...+.++..|..... . ...+.+++.... ...+...++..+.
T Consensus 586 gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~--~--R~~V~t~v~~~~---~~~i~~~i~~el~ 658 (926)
T TIGR00580 586 GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE--D--RLPVRTFVMEYD---PELVREAIRRELL 658 (926)
T ss_pred chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC--C--ccceEEEEEecC---HHHHHHHHHHHHH
Confidence 34556777888889999999999877766666666667766654321 1 123444443222 2222233444455
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc---cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCC
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE 163 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~ 163 (493)
.+.+++||||+++.++.+++.|.+ .+.+..+||+|++.+|++++++|++|+++|||||+++++|||+|++++||+++
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~ 738 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIER 738 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEec
Confidence 678999999999999999999986 46799999999999999999999999999999999999999999999999999
Q ss_pred CCC-ChhHHHHHhhccCCCCCcceEEEecCh------hhHHHHHHHHHH
Q 011113 164 LPN-DPETFVHRSGRTGRAGKEGTAILMFTS------SQRRTVRSLERD 205 (493)
Q Consensus 164 ~p~-~~~~y~qr~GR~gR~g~~g~~i~l~~~------~e~~~~~~l~~~ 205 (493)
.|. ...+|+||+||+||.++.|.||+++.+ ...+.++.|++.
T Consensus 739 a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 739 ADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred CCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 875 678999999999999999999999854 334555555543
No 48
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.90 E-value=5.8e-23 Score=230.46 Aligned_cols=185 Identities=21% Similarity=0.357 Sum_probs=137.2
Q ss_pred CCCCcHHHH-HHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCccc---HHH
Q 011113 1 MLAVGFEED-VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS---KRT 76 (493)
Q Consensus 1 mL~~GF~~~-l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~---k~~ 76 (493)
||+++|... |..++... ++.|+|+||||++.+ .+++.|. +...|.+.+.. ..++++|....... +.+
T Consensus 199 sLn~DfLLg~Lk~lL~~r-pdlKvILmSATid~e--~fs~~F~-~apvI~V~Gr~-----~pVei~y~p~~~~~~~~~~d 269 (1294)
T PRK11131 199 SLNIDFILGYLKELLPRR-PDLKVIITSATIDPE--RFSRHFN-NAPIIEVSGRT-----YPVEVRYRPIVEEADDTERD 269 (1294)
T ss_pred ccccchHHHHHHHhhhcC-CCceEEEeeCCCCHH--HHHHHcC-CCCEEEEcCcc-----ccceEEEeecccccchhhHH
Confidence 588898763 44554433 478999999999753 5655444 44456654321 22455665543221 233
Q ss_pred HHHHHHHH---H--cCCCeEEEEeCChHHHHHHHHHHHc-cC---ceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc
Q 011113 77 ILSDLITV---Y--AKGGKTIVFTQTKRDADEVSLALTS-II---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (493)
Q Consensus 77 ~l~~ll~~---~--~~~~~~IVF~~t~~~~~~l~~~L~~-~~---~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~ 147 (493)
.+..++.. + ...+.+||||+++.+++.+++.|.+ .+ .+..+|++|++++|.++++. .+..+||||||++
T Consensus 270 ~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIA 347 (1294)
T PRK11131 270 QLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVA 347 (1294)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHH
Confidence 33333322 1 2457899999999999999999985 33 47789999999999999987 4788999999999
Q ss_pred cccCCCCCccEEEeCC---------------CC---CChhHHHHHhhccCCCCCcceEEEecChhhHH
Q 011113 148 ARGLDIPNVDLIIHYE---------------LP---NDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 197 (493)
Q Consensus 148 ~~Gidip~v~~VI~~~---------------~p---~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~ 197 (493)
++|||||+|++|||++ +| .|.++|+||+|||||. .+|.||.||++.+..
T Consensus 348 EtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 348 ETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred hhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 9999999999999986 33 4568999999999999 799999999987643
No 49
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.90 E-value=4.4e-22 Score=222.96 Aligned_cols=144 Identities=22% Similarity=0.341 Sum_probs=111.9
Q ss_pred HHHcCCCeEEEEeCChHHHHHHHHHHHcc-------CceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCC
Q 011113 83 TVYAKGGKTIVFTQTKRDADEVSLALTSI-------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155 (493)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~ 155 (493)
+.+....++||||||++.|+.++..|.+. ..+..+||+|++++|..++++|++|+++|||||+++++|||+|+
T Consensus 279 ~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~ 358 (876)
T PRK13767 279 ELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGY 358 (876)
T ss_pred HHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCC
Confidence 33345689999999999999999999752 56899999999999999999999999999999999999999999
Q ss_pred ccEEEeCCCCCChhHHHHHhhccCCC-CCcceEEEecCh-hh-HHHHHHHHHHhCCCceeeCCCC-HHHHHHHHH
Q 011113 156 VDLIIHYELPNDPETFVHRSGRTGRA-GKEGTAILMFTS-SQ-RRTVRSLERDVGCKFEFVSPPV-VEDVLESSA 226 (493)
Q Consensus 156 v~~VI~~~~p~~~~~y~qr~GR~gR~-g~~g~~i~l~~~-~e-~~~~~~l~~~~~~~~~~~~~p~-~~~~~~~~~ 226 (493)
|++||+++.|.++.+|+||+||+||. +.....++++.. .+ .+....++......++.+.+|. ..+++...+
T Consensus 359 Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i 433 (876)
T PRK13767 359 IDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHI 433 (876)
T ss_pred CcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHH
Confidence 99999999999999999999999986 443444444333 22 2222234455555666655553 345554433
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.89 E-value=3.5e-22 Score=226.46 Aligned_cols=189 Identities=16% Similarity=0.236 Sum_probs=147.3
Q ss_pred HHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCe
Q 011113 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGK 90 (493)
Q Consensus 11 ~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 90 (493)
.++++.++.++|+|+||||+++.+..++...+.++..|..... . ...++++...... ..+...++..+...++
T Consensus 739 ~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~--~--r~~v~~~~~~~~~---~~~k~~il~el~r~gq 811 (1147)
T PRK10689 739 KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA--R--RLAVKTFVREYDS---LVVREAILREILRGGQ 811 (1147)
T ss_pred HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCC--C--CCCceEEEEecCc---HHHHHHHHHHHhcCCe
Confidence 4667888899999999999988888888888888887764321 1 1234443333221 1223344444446689
Q ss_pred EEEEeCChHHHHHHHHHHHc---cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCCCC-C
Q 011113 91 TIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP-N 166 (493)
Q Consensus 91 ~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~~p-~ 166 (493)
++||||+++.++.+++.|.+ .+.+..+||+|++++|++++++|++|+++|||||+++++|||+|+|++||..+.. .
T Consensus 812 v~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~f 891 (1147)
T PRK10689 812 VYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 891 (1147)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCC
Confidence 99999999999999999986 3679999999999999999999999999999999999999999999999954332 3
Q ss_pred ChhHHHHHhhccCCCCCcceEEEecCh------hhHHHHHHHHHHh
Q 011113 167 DPETFVHRSGRTGRAGKEGTAILMFTS------SQRRTVRSLERDV 206 (493)
Q Consensus 167 ~~~~y~qr~GR~gR~g~~g~~i~l~~~------~e~~~~~~l~~~~ 206 (493)
+...|+||+||+||.++.|.|++++.+ .....++.|++..
T Consensus 892 glaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~ 937 (1147)
T PRK10689 892 GLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLE 937 (1147)
T ss_pred CHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHhc
Confidence 566899999999999999999999753 3355666666553
No 51
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.89 E-value=1.7e-22 Score=206.21 Aligned_cols=179 Identities=24% Similarity=0.305 Sum_probs=130.4
Q ss_pred HHHHHHhCC-CCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEE--EcCcccHHHHHHHHHHHHc
Q 011113 10 VELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAI--STTATSKRTILSDLITVYA 86 (493)
Q Consensus 10 l~~Il~~~~-~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~--~~~~~~k~~~l~~ll~~~~ 86 (493)
+..+++.++ .+.|+++||||+|+.+.++++.+...+......... ......+.+. ......+...+..+++...
T Consensus 144 l~~~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 220 (358)
T TIGR01587 144 ILAVLEVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKE---ERRFERHRFIKIESDKVGEISSLERLLEFIK 220 (358)
T ss_pred HHHHHHHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcc---ccccccccceeeccccccCHHHHHHHHHHhh
Confidence 555555554 478999999999988877776654332211111000 0001112221 1222355667777777666
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-cC--ceEEEeCCCCHHHHHH----HHhcccCCCEEEEEecccccccCCCCCccEE
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTS-II--ASEALHGDISQHQRER----TLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~--~~~~lhg~~~~~~r~~----~~~~F~~g~~~iLVaT~~~~~Gidip~v~~V 159 (493)
.+.++||||+|++.|+.+++.|.+ .. .+..+||.|++.+|.+ +++.|++++.+|||||+++++||||+ +++|
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~v 299 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVM 299 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEE
Confidence 678999999999999999999986 33 4899999999999976 48999999999999999999999995 8899
Q ss_pred EeCCCCCChhHHHHHhhccCCCCCc----ceEEEecChh
Q 011113 160 IHYELPNDPETFVHRSGRTGRAGKE----GTAILMFTSS 194 (493)
Q Consensus 160 I~~~~p~~~~~y~qr~GR~gR~g~~----g~~i~l~~~~ 194 (493)
|++..| +++|+||+||+||.|+. +.++++....
T Consensus 300 i~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 300 ITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred EEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 998766 78999999999998854 3666665543
No 52
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.88 E-value=9.5e-22 Score=221.49 Aligned_cols=239 Identities=17% Similarity=0.290 Sum_probs=163.3
Q ss_pred CCCCcHHHH-HHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCc------cc
Q 011113 1 MLAVGFEED-VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA------TS 73 (493)
Q Consensus 1 mL~~GF~~~-l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~------~~ 73 (493)
||+++|... +..|+...| +.|+|+||||++. ..+++. +.+...|.+.+.. ..++.+|..... .+
T Consensus 192 sL~~D~LL~lLk~il~~rp-dLKlIlmSATld~--~~fa~~-F~~apvI~V~Gr~-----~PVev~Y~~~~~~~~~~~~~ 262 (1283)
T TIGR01967 192 SLNIDFLLGYLKQLLPRRP-DLKIIITSATIDP--ERFSRH-FNNAPIIEVSGRT-----YPVEVRYRPLVEEQEDDDLD 262 (1283)
T ss_pred hccchhHHHHHHHHHhhCC-CCeEEEEeCCcCH--HHHHHH-hcCCCEEEECCCc-----ccceeEEecccccccchhhh
Confidence 578888875 677766654 7899999999974 455554 4444456654322 123344443321 12
Q ss_pred HHHHHHHHHHHH--cCCCeEEEEeCChHHHHHHHHHHHc-c---CceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc
Q 011113 74 KRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-I---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (493)
Q Consensus 74 k~~~l~~ll~~~--~~~~~~IVF~~t~~~~~~l~~~L~~-~---~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~ 147 (493)
+.+.+..++..+ ...+.+|||++++.+++.+++.|.+ . +.+..+||.|++++|+++++.+. ..+||||||++
T Consensus 263 ~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~--~rkIVLATNIA 340 (1283)
T TIGR01967 263 QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS--GRRIVLATNVA 340 (1283)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC--CceEEEeccHH
Confidence 333333333322 2457999999999999999999985 2 45889999999999999987753 46899999999
Q ss_pred cccCCCCCccEEEeCCCC------------------CChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCC
Q 011113 148 ARGLDIPNVDLIIHYELP------------------NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (493)
Q Consensus 148 ~~Gidip~v~~VI~~~~p------------------~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~ 209 (493)
++|||||+|++||+++++ .|.++|+||+|||||.+ +|.||.|++..+...+. .+
T Consensus 341 EtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~~~---~~---- 412 (1283)
T TIGR01967 341 ETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNSRP---EF---- 412 (1283)
T ss_pred HhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHhhh---hc----
Confidence 999999999999999853 36689999999999997 99999999987653321 11
Q ss_pred ceeeCCCCHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCC
Q 011113 210 FEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGF 270 (493)
Q Consensus 210 ~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~aal~~~~~~ 270 (493)
+..|++...+..++..+......++..| .+++..+.+.+..++..|..+
T Consensus 413 -------~~PEIlR~~L~~viL~l~~lg~~di~~f-----~fldpP~~~~i~~A~~~L~~L 461 (1283)
T TIGR01967 413 -------TDPEILRTNLASVILQMLALRLGDIAAF-----PFIEAPDPRAIRDGFRLLEEL 461 (1283)
T ss_pred -------cCcccccccHHHHHHHHHhcCCCCcccc-----cCCCCCCHHHHHHHHHHHHHC
Confidence 1234444455555555554433333333 245556667777766666433
No 53
>PRK02362 ski2-like helicase; Provisional
Probab=99.88 E-value=2.7e-21 Score=214.25 Aligned_cols=190 Identities=25% Similarity=0.383 Sum_probs=134.1
Q ss_pred CCCcHHHHHHHHHHhC---CCCCcEEEEeccCChHHHHHHHHhcCC--------CceEEeccccccccccceEEEEEEcC
Q 011113 2 LAVGFEEDVELILENL---PPKRQSMLFSATMPSWVKKLSRKYLDN--------PLNIDLVGNQDEKLAEGIKLYAISTT 70 (493)
Q Consensus 2 L~~GF~~~l~~Il~~~---~~~~q~ll~SAT~p~~v~~l~~~~l~~--------~~~i~~~~~~~~~~~~~i~~~~~~~~ 70 (493)
++.++...++.++..+ +++.|+|++|||+|+. .+++ .|+.. |+.+...............+..+.
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la-~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~-- 225 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELA-DWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVE-- 225 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHH-HHhCCCcccCCCCCCCCeeeEecCCeeccccccccCC--
Confidence 4567777787776554 5789999999999862 3333 34432 111110000000000000011111
Q ss_pred cccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHcc-------------------------------------Cc
Q 011113 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------------IA 113 (493)
Q Consensus 71 ~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-------------------------------------~~ 113 (493)
...+...+..+++.+..+.++||||+|++.|+.++..|... ..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~g 305 (737)
T PRK02362 226 VPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKG 305 (737)
T ss_pred CccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhC
Confidence 11223344445555556789999999999999988877531 25
Q ss_pred eEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEe----CC-----CCCChhHHHHHhhccCCCCCc
Q 011113 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE-----LPNDPETFVHRSGRTGRAGKE 184 (493)
Q Consensus 114 ~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~----~~-----~p~~~~~y~qr~GR~gR~g~~ 184 (493)
+.++|++|++.+|+.+++.|++|.++|||||+++++|||+|.+++||+ || .|.+..+|+||+|||||.|..
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 788999999999999999999999999999999999999999999997 66 688999999999999999854
Q ss_pred --ceEEEecChhh
Q 011113 185 --GTAILMFTSSQ 195 (493)
Q Consensus 185 --g~~i~l~~~~e 195 (493)
|.+++++...+
T Consensus 386 ~~G~~ii~~~~~~ 398 (737)
T PRK02362 386 PYGEAVLLAKSYD 398 (737)
T ss_pred CCceEEEEecCch
Confidence 99999987653
No 54
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=1.6e-21 Score=206.99 Aligned_cols=169 Identities=18% Similarity=0.167 Sum_probs=135.8
Q ss_pred cEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHH-cCCCeEEEEeCChHH
Q 011113 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY-AKGGKTIVFTQTKRD 100 (493)
Q Consensus 22 q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~-~~~~~~IVF~~t~~~ 100 (493)
.+..||||++....++.+.|..++..|..... . .....+.++.+...+|...|.+++... ..+.++||||+|++.
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp---~-~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~ 485 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNRP---S-QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAA 485 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCCC---c-cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 45679999999888898888888766654321 1 122334455566677888888888664 235789999999999
Q ss_pred HHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCC---Ccc-----EEEeCCCCCChhHH
Q 011113 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NVD-----LIIHYELPNDPETF 171 (493)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip---~v~-----~VI~~~~p~~~~~y 171 (493)
++.++..|.+ ++++..||+++++.++. +..|+.+...|+||||+++||+||+ +|. |||+|++|.+...|
T Consensus 486 se~L~~~L~~~gi~~~~Lhg~~~~rE~~--ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y 563 (656)
T PRK12898 486 SERLSALLREAGLPHQVLNAKQDAEEAA--IVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARID 563 (656)
T ss_pred HHHHHHHHHHCCCCEEEeeCCcHHHHHH--HHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHH
Confidence 9999999985 89999999996655554 4445555557999999999999999 776 99999999999999
Q ss_pred HHHhhccCCCCCcceEEEecChhhH
Q 011113 172 VHRSGRTGRAGKEGTAILMFTSSQR 196 (493)
Q Consensus 172 ~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (493)
+||+|||||.|.+|.+++|++..|.
T Consensus 564 ~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 564 RQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred HHhcccccCCCCCeEEEEEechhHH
Confidence 9999999999999999999998663
No 55
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=8.1e-23 Score=187.19 Aligned_cols=169 Identities=28% Similarity=0.565 Sum_probs=141.9
Q ss_pred CcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHH
Q 011113 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 83 (493)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 83 (493)
...+.|+.+|++..|++.|+++||||++++++.++++||.||..|-+.. ....+...++++|+.....+|...|.+||+
T Consensus 201 lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDd-E~KLtLHGLqQ~YvkLke~eKNrkl~dLLd 279 (387)
T KOG0329|consen 201 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDD-EAKLTLHGLQQYYVKLKENEKNRKLNDLLD 279 (387)
T ss_pred HHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccc-hhhhhhhhHHHHHHhhhhhhhhhhhhhhhh
Confidence 3568899999999999999999999999999999999999999886543 344566788999999999999999999998
Q ss_pred HHcCCCeEEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCC
Q 011113 84 VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE 163 (493)
Q Consensus 84 ~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~ 163 (493)
.+ .-.+++||+.+... | + | ..+ ||||++..||+||..|+.|+|||
T Consensus 280 ~L-eFNQVvIFvKsv~R-------l-------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYd 324 (387)
T KOG0329|consen 280 VL-EFNQVVIFVKSVQR-------L-------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYD 324 (387)
T ss_pred hh-hhcceeEeeehhhh-------h-------------h----------h---hhh-hHHhhhhccccCcccceeeeccC
Confidence 87 45799999987654 1 0 2 123 89999999999999999999999
Q ss_pred CCCChhHHHHHhhccCCCCCcceEEEecChhh-HHHHHHHHHHhCC
Q 011113 164 LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGC 208 (493)
Q Consensus 164 ~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e-~~~~~~l~~~~~~ 208 (493)
+|.+.++|+||++||||.|.+|.+|+|++..+ ...+..+......
T Consensus 325 mp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v 370 (387)
T KOG0329|consen 325 MPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEV 370 (387)
T ss_pred CCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhc
Confidence 99999999999999999999999999998644 4445555444433
No 56
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.86 E-value=1.3e-20 Score=206.29 Aligned_cols=177 Identities=19% Similarity=0.294 Sum_probs=130.1
Q ss_pred HHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCC
Q 011113 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGG 89 (493)
Q Consensus 10 l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~ 89 (493)
....+...+...|+|+||||+.+....+......+...++.. ... ...+....+ ....+..++..+.+......
T Consensus 399 qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~--p~~--r~~i~~~~~--~~~~~~~~~~~i~~~~~~g~ 472 (681)
T PRK10917 399 QRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDEL--PPG--RKPITTVVI--PDSRRDEVYERIREEIAKGR 472 (681)
T ss_pred HHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecC--CCC--CCCcEEEEe--CcccHHHHHHHHHHHHHcCC
Confidence 344555556679999999998665544442111122223211 111 122333333 23334444455555556678
Q ss_pred eEEEEeCCh--------HHHHHHHHHHHcc---CceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccE
Q 011113 90 KTIVFTQTK--------RDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (493)
Q Consensus 90 ~~IVF~~t~--------~~~~~l~~~L~~~---~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~ 158 (493)
+++|||++. ..++.+++.|.+. +.+..+||+|++.+|++++++|++|+++|||||+++++|||+|++++
T Consensus 473 q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~ 552 (681)
T PRK10917 473 QAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATV 552 (681)
T ss_pred cEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcE
Confidence 999999964 3456777777753 57999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCC-ChhHHHHHhhccCCCCCcceEEEecC
Q 011113 159 IIHYELPN-DPETFVHRSGRTGRAGKEGTAILMFT 192 (493)
Q Consensus 159 VI~~~~p~-~~~~y~qr~GR~gR~g~~g~~i~l~~ 192 (493)
||+++.|. ..+.|+||+||+||.+.+|.|++++.
T Consensus 553 VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 553 MVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred EEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 99999997 57888999999999999999999995
No 57
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.86 E-value=1.5e-21 Score=190.51 Aligned_cols=189 Identities=31% Similarity=0.494 Sum_probs=151.4
Q ss_pred CCCCcHHHHHHHHHHhCCC------CCcEEEEeccCCh-HHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcc-
Q 011113 1 MLAVGFEEDVELILENLPP------KRQSMLFSATMPS-WVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT- 72 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~------~~q~ll~SAT~p~-~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~- 72 (493)
+|..|+-+.|..+..++|+ ..|.+++|||+.. +|+.+.++.|+.|..|++.. +..++..+.|....+.+.
T Consensus 375 lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkg--eD~vpetvHhvv~lv~p~~ 452 (725)
T KOG0349|consen 375 LLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKG--EDLVPETVHHVVKLVCPSV 452 (725)
T ss_pred hhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccc--ccccchhhccceeecCCcc
Confidence 4667888889888888874 4799999999965 67788888999999998764 334444444443332221
Q ss_pred -cHHHHHHH----------------------------H---------HHHHcCCCeEEEEeCChHHHHHHHHHHHc----
Q 011113 73 -SKRTILSD----------------------------L---------ITVYAKGGKTIVFTQTKRDADEVSLALTS---- 110 (493)
Q Consensus 73 -~k~~~l~~----------------------------l---------l~~~~~~~~~IVF~~t~~~~~~l~~~L~~---- 110 (493)
....-|.. + ++.+ .-.++||||.|+.+|+.|..++.+
T Consensus 453 d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dcDnLer~~~qkgg~ 531 (725)
T KOG0349|consen 453 DGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDCDNLERMMNQKGGK 531 (725)
T ss_pred CccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccchHHHHHHHHcCCc
Confidence 01111111 1 1111 236899999999999999999974
Q ss_pred cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEe
Q 011113 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (493)
Q Consensus 111 ~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l 190 (493)
.+.+.++|++..+.+|...++.|+..+++.|||||+++|||||..+-++||.-+|.+...|+||+||+||+.+-|.+|.+
T Consensus 532 ~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaisl 611 (725)
T KOG0349|consen 532 HYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISL 611 (725)
T ss_pred cceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cC
Q 011113 191 FT 192 (493)
Q Consensus 191 ~~ 192 (493)
+.
T Consensus 612 va 613 (725)
T KOG0349|consen 612 VA 613 (725)
T ss_pred ee
Confidence 64
No 58
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.86 E-value=6.8e-21 Score=211.03 Aligned_cols=163 Identities=17% Similarity=0.243 Sum_probs=139.7
Q ss_pred cHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHH-c-cCceEEEeCCCCHHHHHHHHhcccCC--CEEEEEeccccc
Q 011113 73 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-S-IIASEALHGDISQHQRERTLNGFRQG--KFTVLVATDVAA 148 (493)
Q Consensus 73 ~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~-~-~~~~~~lhg~~~~~~r~~~~~~F~~g--~~~iLVaT~~~~ 148 (493)
.|.+.|.++++.. ...|+||||+++..++.|++.|. . ++.+..+||+|++.+|+++++.|+++ ..+|||||++++
T Consensus 479 ~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgs 557 (956)
T PRK04914 479 PRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS 557 (956)
T ss_pred HHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhc
Confidence 4566677777654 46899999999999999999995 3 79999999999999999999999984 699999999999
Q ss_pred ccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCC--CceeeCCCCHHHHHHHHH
Q 011113 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC--KFEFVSPPVVEDVLESSA 226 (493)
Q Consensus 149 ~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~--~~~~~~~p~~~~~~~~~~ 226 (493)
+|+|++.+++|||||+|++++.|+||+||++|.|+++.+.+++...+....+.|.+.+.. .+-...+|+..++.+...
T Consensus 558 eGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v~~~~~ 637 (956)
T PRK04914 558 EGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRALYDEFG 637 (956)
T ss_pred cCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999888777766555556666666654 556678899999999888
Q ss_pred HHHHHHhcCC
Q 011113 227 EQVVATLNGV 236 (493)
Q Consensus 227 ~~~~~~l~~~ 236 (493)
+.+...+...
T Consensus 638 ~~l~~~l~~~ 647 (956)
T PRK04914 638 DELIPYLASP 647 (956)
T ss_pred HHHHHHHhCC
Confidence 8888777554
No 59
>PRK00254 ski2-like helicase; Provisional
Probab=99.86 E-value=1.2e-20 Score=208.58 Aligned_cols=205 Identities=23% Similarity=0.305 Sum_probs=139.4
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccce-EEEEEEcCcc--cH--HH
Q 011113 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI-KLYAISTTAT--SK--RT 76 (493)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i-~~~~~~~~~~--~k--~~ 76 (493)
++.++...++.|+..++...|+|++|||+++ ..+++. |+....... .. ........+ .+.++..... .+ ..
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~~~-~~-rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 226 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELVVS-DW-RPVKLRKGVFYQGFLFWEDGKIERFPNS 226 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCccccC-CC-CCCcceeeEecCCeeeccCcchhcchHH
Confidence 4567888999999999999999999999986 345554 665332111 10 000000011 0111111111 11 11
Q ss_pred HHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc----------------------------------cCceEEEeCCCC
Q 011113 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS----------------------------------IIASEALHGDIS 122 (493)
Q Consensus 77 ~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~----------------------------------~~~~~~lhg~~~ 122 (493)
....+.+....+.++||||+|++.|+.++..|.. ...+.++|++|+
T Consensus 227 ~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~ 306 (720)
T PRK00254 227 WESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLG 306 (720)
T ss_pred HHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCC
Confidence 1111223333568999999999999887766531 124889999999
Q ss_pred HHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEe-------CCCCC-ChhHHHHHhhccCCCC--CcceEEEecC
Q 011113 123 QHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH-------YELPN-DPETFVHRSGRTGRAG--KEGTAILMFT 192 (493)
Q Consensus 123 ~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~-------~~~p~-~~~~y~qr~GR~gR~g--~~g~~i~l~~ 192 (493)
+++|..+++.|++|.++|||||+++++|+|+|.+++||. ++.|. +..+|+||+|||||.+ ..|.+++++.
T Consensus 307 ~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~ 386 (720)
T PRK00254 307 RTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVAT 386 (720)
T ss_pred HHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEec
Confidence 999999999999999999999999999999999999994 55544 5779999999999975 6799999987
Q ss_pred hhhHHHHHHHHHHhCCCcee
Q 011113 193 SSQRRTVRSLERDVGCKFEF 212 (493)
Q Consensus 193 ~~e~~~~~~l~~~~~~~~~~ 212 (493)
..+.. +.+++++..+++.
T Consensus 387 ~~~~~--~~~~~~~~~~pe~ 404 (720)
T PRK00254 387 TEEPS--KLMERYIFGKPEK 404 (720)
T ss_pred CcchH--HHHHHHHhCCchh
Confidence 65422 1244554444444
No 60
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.84 E-value=5.7e-20 Score=199.89 Aligned_cols=167 Identities=22% Similarity=0.283 Sum_probs=123.1
Q ss_pred CCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCCh-
Q 011113 20 KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK- 98 (493)
Q Consensus 20 ~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~- 98 (493)
..|+|+||||+.+....+.....-+...++.. .. ....+..+.+ ....+..++..+.+......+++|||++.
T Consensus 386 ~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~--p~--~r~~i~~~~~--~~~~~~~~~~~i~~~l~~g~q~~v~~~~i~ 459 (630)
T TIGR00643 386 TPHVLVMSATPIPRTLALTVYGDLDTSIIDEL--PP--GRKPITTVLI--KHDEKDIVYEFIEEEIAKGRQAYVVYPLIE 459 (630)
T ss_pred CCCEEEEeCCCCcHHHHHHhcCCcceeeeccC--CC--CCCceEEEEe--CcchHHHHHHHHHHHHHhCCcEEEEEcccc
Confidence 68999999997654433332111111222211 11 1122333332 23334445555555555678999999976
Q ss_pred -------HHHHHHHHHHHc---cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCCCCC-C
Q 011113 99 -------RDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN-D 167 (493)
Q Consensus 99 -------~~~~~l~~~L~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~~p~-~ 167 (493)
..++.+++.|.+ .+.+..+||+|++++|+.++++|++|+++|||||+++++|||+|++++||+++.|. .
T Consensus 460 ~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~g 539 (630)
T TIGR00643 460 ESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFG 539 (630)
T ss_pred ccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCC
Confidence 456677777764 46799999999999999999999999999999999999999999999999999986 6
Q ss_pred hhHHHHHhhccCCCCCcceEEEecC
Q 011113 168 PETFVHRSGRTGRAGKEGTAILMFT 192 (493)
Q Consensus 168 ~~~y~qr~GR~gR~g~~g~~i~l~~ 192 (493)
.+.|.||+||+||.+++|.|++++.
T Consensus 540 ls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 540 LSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred HHHHHHHhhhcccCCCCcEEEEEEC
Confidence 7889999999999999999999983
No 61
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.82 E-value=1.3e-18 Score=189.23 Aligned_cols=139 Identities=27% Similarity=0.418 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCC
Q 011113 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (493)
Q Consensus 75 ~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi 153 (493)
..++..+......+.++||||+|++.++.|++.|.. ++.+..+|+++++.+|..+++.|++|++.|||||+++++|+|+
T Consensus 433 ~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdl 512 (652)
T PRK05298 433 DDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDI 512 (652)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccc
Confidence 344444444445678999999999999999999986 7899999999999999999999999999999999999999999
Q ss_pred CCccEEEeCCC-----CCChhHHHHHhhccCCCCCcceEEEecCh---------hhHHHHHHHHHHhCCCceeeC
Q 011113 154 PNVDLIIHYEL-----PNDPETFVHRSGRTGRAGKEGTAILMFTS---------SQRRTVRSLERDVGCKFEFVS 214 (493)
Q Consensus 154 p~v~~VI~~~~-----p~~~~~y~qr~GR~gR~g~~g~~i~l~~~---------~e~~~~~~l~~~~~~~~~~~~ 214 (493)
|++++||+++. |.+..+|+||+|||||. ..|.+++|++. .+...++.++..++.+...++
T Consensus 513 p~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 586 (652)
T PRK05298 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITP 586 (652)
T ss_pred cCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 99999999884 78999999999999996 78999999984 466677778877777765544
No 62
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=6.3e-19 Score=191.14 Aligned_cols=168 Identities=18% Similarity=0.212 Sum_probs=131.6
Q ss_pred cEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEE-EEEEcCcccHHHHHHHHHHH-HcCCCeEEEEeCChH
Q 011113 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKR 99 (493)
Q Consensus 22 q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~-~~~~~~~IVF~~t~~ 99 (493)
.+..||.|...+-.++.+.|--+ ++.+. .+++.....+ -.+......|..+|...+.. +....++||||+|++
T Consensus 365 kl~GmTGTa~t~~~e~~~~Y~l~--v~~IP---t~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~ 439 (790)
T PRK09200 365 KLSGMTGTAKTEEKEFFEVYNME--VVQIP---TNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIE 439 (790)
T ss_pred HHhccCCCChHHHHHHHHHhCCc--EEECC---CCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 45678999866666665555322 22222 1121111111 12334556788877777654 356789999999999
Q ss_pred HHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCC---CCcc-----EEEeCCCCCChhH
Q 011113 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI---PNVD-----LIIHYELPNDPET 170 (493)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi---p~v~-----~VI~~~~p~~~~~ 170 (493)
.++.++..|.+ ++++..+|+++.+.++..+..+++.+ .|+||||+++||+|| |+|. |||+|++|.+...
T Consensus 440 ~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~ 517 (790)
T PRK09200 440 QSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRV 517 (790)
T ss_pred HHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHH
Confidence 99999999986 89999999999999999999888876 699999999999999 7998 9999999999999
Q ss_pred HHHHhhccCCCCCcceEEEecChhhH
Q 011113 171 FVHRSGRTGRAGKEGTAILMFTSSQR 196 (493)
Q Consensus 171 y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (493)
|+||+|||||.|.+|.+++|++..|.
T Consensus 518 y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 518 DLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred HHHhhccccCCCCCeeEEEEEcchHH
Confidence 99999999999999999999987653
No 63
>PRK09401 reverse gyrase; Reviewed
Probab=99.82 E-value=1.4e-19 Score=205.75 Aligned_cols=163 Identities=24% Similarity=0.307 Sum_probs=132.2
Q ss_pred CcHH-HHHHHHHHhCCC------------------------CCcEEEEeccCChH-HHHHHHHhcCCCceEEeccccccc
Q 011113 4 VGFE-EDVELILENLPP------------------------KRQSMLFSATMPSW-VKKLSRKYLDNPLNIDLVGNQDEK 57 (493)
Q Consensus 4 ~GF~-~~l~~Il~~~~~------------------------~~q~ll~SAT~p~~-v~~l~~~~l~~~~~i~~~~~~~~~ 57 (493)
|||. ++|+.|++.+|. ..|+++||||+++. +.. .+++++..+++.. ...
T Consensus 227 lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~--~~~ 301 (1176)
T PRK09401 227 LGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGS--PVF 301 (1176)
T ss_pred CCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecC--ccc
Confidence 8995 789999988875 78999999999864 332 2334554455432 233
Q ss_pred cccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCChHH---HHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcc
Q 011113 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRD---ADEVSLALTS-IIASEALHGDISQHQRERTLNGF 133 (493)
Q Consensus 58 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~---~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F 133 (493)
...++.+.++.+. ++...|..+++.+ +.++||||+|+.. |+.+++.|.. ++.+..+||+| ++.+++|
T Consensus 302 ~~rnI~~~yi~~~--~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F 372 (1176)
T PRK09401 302 YLRNIVDSYIVDE--DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKF 372 (1176)
T ss_pred ccCCceEEEEEcc--cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHH
Confidence 4567888887665 6777777888765 3589999999877 9999999996 89999999999 2346999
Q ss_pred cCCCEEEEEe----cccccccCCCCC-ccEEEeCCCCC------ChhHHHHHhhccCC
Q 011113 134 RQGKFTVLVA----TDVAARGLDIPN-VDLIIHYELPN------DPETFVHRSGRTGR 180 (493)
Q Consensus 134 ~~g~~~iLVa----T~~~~~Gidip~-v~~VI~~~~p~------~~~~y~qr~GR~gR 180 (493)
++|+++|||| ||+++||||+|+ |++||||++|. ..+.|.||++|+..
T Consensus 373 ~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 373 EEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred HCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 9999999999 699999999999 89999999998 77899999999864
No 64
>PRK01172 ski2-like helicase; Provisional
Probab=99.81 E-value=6.1e-19 Score=194.04 Aligned_cols=187 Identities=23% Similarity=0.308 Sum_probs=125.6
Q ss_pred CCCcHHHHHHHHHH---hCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceE---EEEEEcCcccHH
Q 011113 2 LAVGFEEDVELILE---NLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIK---LYAISTTATSKR 75 (493)
Q Consensus 2 L~~GF~~~l~~Il~---~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~---~~~~~~~~~~k~ 75 (493)
.|.++...++.++. .++++.|+|++|||+++. .++++ |+..+. +.... ........+. ..+.........
T Consensus 148 ~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~~~~-~~~~~-r~vpl~~~i~~~~~~~~~~~~~~~~ 223 (674)
T PRK01172 148 GDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLNASL-IKSNF-RPVPLKLGILYRKRLILDGYERSQV 223 (674)
T ss_pred cCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhCCCc-cCCCC-CCCCeEEEEEecCeeeecccccccc
Confidence 34556566666654 456789999999999763 44543 554322 11100 0000000010 011100111111
Q ss_pred HHHHHHHHH-HcCCCeEEEEeCChHHHHHHHHHHHcc--------------------------CceEEEeCCCCHHHHHH
Q 011113 76 TILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSI--------------------------IASEALHGDISQHQRER 128 (493)
Q Consensus 76 ~~l~~ll~~-~~~~~~~IVF~~t~~~~~~l~~~L~~~--------------------------~~~~~lhg~~~~~~r~~ 128 (493)
. +..++.. ...++++||||+|++.|+.++..|... ..+.++|++|++++|..
T Consensus 224 ~-~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 224 D-INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred c-HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 1 2233332 345689999999999999999888632 13778999999999999
Q ss_pred HHhcccCCCEEEEEecccccccCCCCCccEEEeCC---------CCCChhHHHHHhhccCCCC--CcceEEEecChh
Q 011113 129 TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE---------LPNDPETFVHRSGRTGRAG--KEGTAILMFTSS 194 (493)
Q Consensus 129 ~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~---------~p~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~ 194 (493)
+++.|++|.++|||||+++++|+|+|...+|| ++ .|.++.+|.||+|||||.| ..|.+++++...
T Consensus 303 ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 303 IEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 99999999999999999999999999876555 33 3568899999999999998 467788886544
No 65
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.79 E-value=3.1e-18 Score=184.99 Aligned_cols=129 Identities=25% Similarity=0.429 Sum_probs=113.6
Q ss_pred HHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCC
Q 011113 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (493)
Q Consensus 76 ~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip 154 (493)
.++..+......+.++||||+|++.++.|++.|.+ ++.+..+|+++++.+|.++++.|++|++.|||||+++++|+|+|
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLP 509 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeC
Confidence 44444444455678999999999999999999986 78999999999999999999999999999999999999999999
Q ss_pred CccEEEeCC-----CCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHH
Q 011113 155 NVDLIIHYE-----LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (493)
Q Consensus 155 ~v~~VI~~~-----~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~ 205 (493)
++++||++| .|.+..+|+||+|||||. ..|.++++++..+..+.+.|+..
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 999999988 799999999999999998 68999999987766555555443
No 66
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.79 E-value=2.4e-18 Score=189.40 Aligned_cols=195 Identities=21% Similarity=0.311 Sum_probs=155.5
Q ss_pred HHHHHHHHH---HhCCCCCcEEEEeccCChHHHHHHHHhcC--CCceEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011113 6 FEEDVELIL---ENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (493)
Q Consensus 6 F~~~l~~Il---~~~~~~~q~ll~SAT~p~~v~~l~~~~l~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 80 (493)
|+++-.++. ...| ...+|.++||....|++-+-..|+ +|..+.- .. ...++...+...........+..
T Consensus 404 FRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~---sf--nR~NL~yeV~~k~~~~~~~~~~~ 477 (941)
T KOG0351|consen 404 FRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFKS---SF--NRPNLKYEVSPKTDKDALLDILE 477 (941)
T ss_pred ccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceecc---cC--CCCCceEEEEeccCccchHHHHH
Confidence 666655543 3334 489999999998888776666655 5553321 12 23444433333332344444455
Q ss_pred HHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEE
Q 011113 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (493)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~V 159 (493)
.+..+.+....||||.++.+|+.++..|.+ ++.+..||++|+..+|+.|.++|..++++|+|||=++.+|||.|+|..|
T Consensus 478 ~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~V 557 (941)
T KOG0351|consen 478 ESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFV 557 (941)
T ss_pred HhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEE
Confidence 555566778999999999999999999997 7899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHh
Q 011113 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (493)
Q Consensus 160 I~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~ 206 (493)
|||.+|.+.+.|.|-+|||||.|....|++|+...+...++.+...-
T Consensus 558 iH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 558 IHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred EECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999887777765543
No 67
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.78 E-value=4.5e-18 Score=172.85 Aligned_cols=157 Identities=20% Similarity=0.264 Sum_probs=110.7
Q ss_pred HHHHhCCCCCcEEEEeccCChHHHHHHHHh--cCCCceEEeccc--cc---------------cccccceEEEEEEcCcc
Q 011113 12 LILENLPPKRQSMLFSATMPSWVKKLSRKY--LDNPLNIDLVGN--QD---------------EKLAEGIKLYAISTTAT 72 (493)
Q Consensus 12 ~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~--l~~~~~i~~~~~--~~---------------~~~~~~i~~~~~~~~~~ 72 (493)
.++...+...+++++|||+|+++.+.+... +..+. +.+.+. .. ......+++.+.. ...
T Consensus 173 ~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~-~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 250 (357)
T TIGR03158 173 QLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKI-APIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APD 250 (357)
T ss_pred HHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCcee-eeecCcccccCCChhhhccccccccceeccceEEEEEe-CCc
Confidence 344444446799999999999988877654 33332 112211 00 0011245555544 333
Q ss_pred cHHHHHHHHHHHH------cCCCeEEEEeCChHHHHHHHHHHHc---cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEe
Q 011113 73 SKRTILSDLITVY------AKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVA 143 (493)
Q Consensus 73 ~k~~~l~~ll~~~------~~~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVa 143 (493)
.+...+..+++.. .++.++||||+|++.++.++..|++ .+.+..+||.+++.+|+++. +.+||||
T Consensus 251 ~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~~iLVa 324 (357)
T TIGR03158 251 FKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QFDILLG 324 (357)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cCCEEEE
Confidence 4544444433322 2457999999999999999999985 25788999999999998664 6789999
Q ss_pred cccccccCCCCCccEEEeCCCCCChhHHHHHhhccC
Q 011113 144 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179 (493)
Q Consensus 144 T~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~g 179 (493)
||++++||||+.+ +|| ++ |.+.++|+||+||||
T Consensus 325 Tdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 325 TSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999999999987 566 45 899999999999986
No 68
>PRK14701 reverse gyrase; Provisional
Probab=99.78 E-value=1.2e-18 Score=202.51 Aligned_cols=187 Identities=18% Similarity=0.238 Sum_probs=142.3
Q ss_pred CcHHHHHHH----HHH----------------------hCCCCCc-EEEEeccCChHHHHHHHHhcCCCceEEecccccc
Q 011113 4 VGFEEDVEL----ILE----------------------NLPPKRQ-SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDE 56 (493)
Q Consensus 4 ~GF~~~l~~----Il~----------------------~~~~~~q-~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~ 56 (493)
|||.+++.+ |++ .+|+..| ++++|||+++.. ...++++++..+.+.. ..
T Consensus 226 lGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~~~~l~f~v~~--~~ 301 (1638)
T PRK14701 226 LGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLYRELLGFEVGS--GR 301 (1638)
T ss_pred CCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHhhcCeEEEecC--CC
Confidence 799999975 543 3455666 567999998631 1123446666665542 23
Q ss_pred ccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCChHH---HHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhc
Q 011113 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRD---ADEVSLALTS-IIASEALHGDISQHQRERTLNG 132 (493)
Q Consensus 57 ~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~---~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~ 132 (493)
....++.+.++.+....+ ..|.++++.+ +..+||||+|++. |+++++.|.. ++.+..+|++ |..++++
T Consensus 302 ~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~ 373 (1638)
T PRK14701 302 SALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDL 373 (1638)
T ss_pred CCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHH
Confidence 345677888877655545 4566777654 4689999999886 5899999985 8999999995 8899999
Q ss_pred ccCCCEEEEEec----ccccccCCCCC-ccEEEeCCCCC---ChhHHHHHh-------------hccCCCCCcceEEEec
Q 011113 133 FRQGKFTVLVAT----DVAARGLDIPN-VDLIIHYELPN---DPETFVHRS-------------GRTGRAGKEGTAILMF 191 (493)
Q Consensus 133 F~~g~~~iLVaT----~~~~~Gidip~-v~~VI~~~~p~---~~~~y~qr~-------------GR~gR~g~~g~~i~l~ 191 (493)
|++|+++||||| ++++||||+|+ |.+||||++|. +.+.|.|.. +|++|.|.+..+++.+
T Consensus 374 F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~ 453 (1638)
T PRK14701 374 FEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDV 453 (1638)
T ss_pred HHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHh
Confidence 999999999999 59999999999 99999999999 888776655 9999999888887666
Q ss_pred ChhhHHHHHHH
Q 011113 192 TSSQRRTVRSL 202 (493)
Q Consensus 192 ~~~e~~~~~~l 202 (493)
...+...++.+
T Consensus 454 ~~~~~~~~~~~ 464 (1638)
T PRK14701 454 FPEDVEFLRSI 464 (1638)
T ss_pred HHHHHHHHHHH
Confidence 66665555444
No 69
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.78 E-value=8.8e-18 Score=180.71 Aligned_cols=167 Identities=19% Similarity=0.194 Sum_probs=129.5
Q ss_pred cEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEE-EEEEcCcccHHHHHHHHHHH-HcCCCeEEEEeCChH
Q 011113 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKR 99 (493)
Q Consensus 22 q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~-~~~~~~~IVF~~t~~ 99 (493)
.+..||.|...+..++.+.|--+ ++.+. .+++.....+ -.+......|..++...+.. +....++||||+|++
T Consensus 361 kl~GmTGTa~~~~~Ef~~iY~l~--v~~IP---t~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~ 435 (762)
T TIGR03714 361 KLSGMTGTGKVAEKEFIETYSLS--VVKIP---TNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVE 435 (762)
T ss_pred hhcccCCCChhHHHHHHHHhCCC--EEEcC---CCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHH
Confidence 45668888866666666555322 22222 1222111111 12334455677777666644 456789999999999
Q ss_pred HHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCC---------CccEEEeCCCCCChh
Q 011113 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---------NVDLIIHYELPNDPE 169 (493)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip---------~v~~VI~~~~p~~~~ 169 (493)
.++.++..|.+ ++++..+|+++.+.++..+.++++.+ .|+||||+++||+||+ .+.+|+++++|....
T Consensus 436 ~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~ri 513 (762)
T TIGR03714 436 MSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRV 513 (762)
T ss_pred HHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHH
Confidence 99999999985 89999999999999999999888877 6999999999999999 999999999998877
Q ss_pred HHHHHhhccCCCCCcceEEEecChhhH
Q 011113 170 TFVHRSGRTGRAGKEGTAILMFTSSQR 196 (493)
Q Consensus 170 ~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (493)
+ +||+|||||.|++|.+++|++..|.
T Consensus 514 d-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 514 D-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred H-HHhhhcccCCCCceeEEEEEccchh
Confidence 7 9999999999999999999988653
No 70
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.78 E-value=3.5e-17 Score=176.91 Aligned_cols=199 Identities=23% Similarity=0.367 Sum_probs=140.7
Q ss_pred HHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcC-C--Cce-EEeccccccccccceEEEEEEcCcc------cHHHHHH
Q 011113 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLD-N--PLN-IDLVGNQDEKLAEGIKLYAISTTAT------SKRTILS 79 (493)
Q Consensus 10 l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~-~--~~~-i~~~~~~~~~~~~~i~~~~~~~~~~------~k~~~l~ 79 (493)
++.+....+ +.|.|.+|||+.+. ..+++ |+- . +.. |++.. ....++..+..... .-..++.
T Consensus 174 LeRL~~l~~-~~qRIGLSATV~~~-~~var-fL~g~~~~~~Iv~~~~------~k~~~i~v~~p~~~~~~~~~~~~~~~~ 244 (814)
T COG1201 174 LERLRELAG-DFQRIGLSATVGPP-EEVAK-FLVGFGDPCEIVDVSA------AKKLEIKVISPVEDLIYDEELWAALYE 244 (814)
T ss_pred HHHHHhhCc-ccEEEeehhccCCH-HHHHH-HhcCCCCceEEEEccc------CCcceEEEEecCCccccccchhHHHHH
Confidence 445555555 89999999999643 33333 443 3 222 33221 12222222222221 1122333
Q ss_pred HHHHHHcCCCeEEEEeCChHHHHHHHHHHHcc--CceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCcc
Q 011113 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (493)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~--~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~ 157 (493)
.+.+...+...+|||+||+..++.++..|.+. ..+..+||.++.++|..+.++|++|+.+.+|||..++.|||+.+|+
T Consensus 245 ~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vd 324 (814)
T COG1201 245 RIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDID 324 (814)
T ss_pred HHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCce
Confidence 33344445579999999999999999999973 6899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCChhHHHHHhhccCC-CCCcceEEEecChhhH--HHHHHHHHHhCCCceeeCCCC
Q 011113 158 LIIHYELPNDPETFVHRSGRTGR-AGKEGTAILMFTSSQR--RTVRSLERDVGCKFEFVSPPV 217 (493)
Q Consensus 158 ~VI~~~~p~~~~~y~qr~GR~gR-~g~~g~~i~l~~~~e~--~~~~~l~~~~~~~~~~~~~p~ 217 (493)
+||||..|.++..++||+||+|+ .+.....+++....+. ...........-+++.+.+|.
T Consensus 325 lVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~ 387 (814)
T COG1201 325 LVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPK 387 (814)
T ss_pred EEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCC
Confidence 99999999999999999999996 5566777777666332 222333455556666555553
No 71
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.77 E-value=1e-17 Score=177.72 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHH-cCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEec-cccccc
Q 011113 74 KRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT-DVAARG 150 (493)
Q Consensus 74 k~~~l~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT-~~~~~G 150 (493)
+..++..++..+ ..+.++||||+++++++.|++.|.+ ++.+..+||+|++++|..+++.|++++..||||| +++++|
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG 408 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTG 408 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccc
Confidence 344444444333 3457899999999999999999986 7899999999999999999999999999999998 999999
Q ss_pred CCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcc
Q 011113 151 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG 185 (493)
Q Consensus 151 idip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g 185 (493)
+|+|++++||++.+|.+...|+||+||++|.+...
T Consensus 409 ~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 409 ISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 99999999999999999999999999999976443
No 72
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.77 E-value=4e-18 Score=171.00 Aligned_cols=121 Identities=33% Similarity=0.568 Sum_probs=105.3
Q ss_pred cHHHHHHHHHHHH---cCCCeEEEEeCChHHHHHHHHHHHc-cCceE-EE--------eCCCCHHHHHHHHhcccCCCEE
Q 011113 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASE-AL--------HGDISQHQRERTLNGFRQGKFT 139 (493)
Q Consensus 73 ~k~~~l~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~-~l--------hg~~~~~~r~~~~~~F~~g~~~ 139 (493)
.|++.+.++++.. ..+.++|||++.+++|+.|+.+|.+ +..+. .+ ..+|+|.++.+++++|++|+++
T Consensus 348 PKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n 427 (542)
T COG1111 348 PKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN 427 (542)
T ss_pred ccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce
Confidence 4666666776554 2457999999999999999999986 44332 22 2479999999999999999999
Q ss_pred EEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChh
Q 011113 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 194 (493)
Q Consensus 140 iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~ 194 (493)
|||||+++++|||||++++||.|++-.|+..++||.|||||. +.|.+++|++..
T Consensus 428 VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 428 VLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred EEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 999999999999999999999999999999999999999997 899999998875
No 73
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.76 E-value=9.1e-18 Score=145.30 Aligned_cols=127 Identities=46% Similarity=0.772 Sum_probs=112.0
Q ss_pred EEEEEEcCcccHHHHHHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEE
Q 011113 63 KLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTV 140 (493)
Q Consensus 63 ~~~~~~~~~~~k~~~l~~ll~~~~-~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~i 140 (493)
.+++...+ ..|...+..++.... ...++||||++++.++.+++.|.+ ...+..+|+.++..+|..+++.|+++...|
T Consensus 3 ~~~~~~~~-~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 81 (131)
T cd00079 3 KQYVLPVE-DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVV 81 (131)
T ss_pred EEEEEECC-HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcE
Confidence 34444443 267777777776653 467999999999999999999986 788999999999999999999999999999
Q ss_pred EEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEe
Q 011113 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (493)
Q Consensus 141 LVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l 190 (493)
||+|+++++|+|+|.+++||.+++|++...|+|++||++|.|..+.++++
T Consensus 82 li~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 82 LVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999999999988887764
No 74
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.76 E-value=9.4e-18 Score=179.45 Aligned_cols=168 Identities=20% Similarity=0.204 Sum_probs=130.6
Q ss_pred cEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEE-EEEEcCcccHHHHH-HHHHHHHcCCCeEEEEeCChH
Q 011113 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKR 99 (493)
Q Consensus 22 q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l-~~ll~~~~~~~~~IVF~~t~~ 99 (493)
.+..||.|...+..++.+.|--+.+. +. .+++.....+ -.+......|..++ ..+.+.+..+.++||||+|++
T Consensus 342 kl~GmTGTa~te~~E~~~iY~l~vv~--IP---tnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~ 416 (745)
T TIGR00963 342 KLSGMTGTAKTEEEEFEKIYNLEVVV--VP---TNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVE 416 (745)
T ss_pred hhhccCCCcHHHHHHHHHHhCCCEEE--eC---CCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 45568899877766666655433222 22 1111111111 11223334566555 445555667889999999999
Q ss_pred HHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCC-------ccEEEeCCCCCChhHH
Q 011113 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN-------VDLIIHYELPNDPETF 171 (493)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~-------v~~VI~~~~p~~~~~y 171 (493)
.++.++..|.+ ++++..||+. +.+|+..+.+|+.+...|+||||+++||+||+. ..|||+++.|.+...|
T Consensus 417 ~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~ 494 (745)
T TIGR00963 417 KSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRID 494 (745)
T ss_pred HHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHH
Confidence 99999999986 8999999999 889999999999999999999999999999998 5599999999999999
Q ss_pred HHHhhccCCCCCcceEEEecChhhH
Q 011113 172 VHRSGRTGRAGKEGTAILMFTSSQR 196 (493)
Q Consensus 172 ~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (493)
.|++|||||.|.+|.+.+|++..|.
T Consensus 495 ~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 495 NQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred HHHhccccCCCCCcceEEEEeccHH
Confidence 9999999999999999999987663
No 75
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.74 E-value=4.1e-17 Score=177.66 Aligned_cols=232 Identities=19% Similarity=0.296 Sum_probs=170.4
Q ss_pred HHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcC-ccc-HHHHHHHHHHHH--
Q 011113 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATS-KRTILSDLITVY-- 85 (493)
Q Consensus 10 l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~-k~~~l~~ll~~~-- 85 (493)
+..++...+++.++|+||||+..+ -+.+|+.++..+.+.+.. -.++.+|.... ... -.+.+...+..+
T Consensus 185 lk~~~~~rr~DLKiIimSATld~~---rfs~~f~~apvi~i~GR~-----fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~ 256 (845)
T COG1643 185 LKDLLARRRDDLKLIIMSATLDAE---RFSAYFGNAPVIEIEGRT-----YPVEIRYLPEAEADYILLDAIVAAVDIHLR 256 (845)
T ss_pred HHHHHhhcCCCceEEEEecccCHH---HHHHHcCCCCEEEecCCc-----cceEEEecCCCCcchhHHHHHHHHHHHhcc
Confidence 345577778789999999999765 455688888878776543 22444553333 223 344555555444
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEE
Q 011113 86 AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (493)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI 160 (493)
...+.+|||.+..++.+.+++.|.+ .+.+.++|+.|+.+++.++++.-..++.+|++||++++.+|.||+|.+||
T Consensus 257 ~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VI 336 (845)
T COG1643 257 EGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVI 336 (845)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEe
Confidence 2457999999999999999999985 25688999999999999999999998888999999999999999999999
Q ss_pred eCCC------------------CCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCCCHHHHH
Q 011113 161 HYEL------------------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 222 (493)
Q Consensus 161 ~~~~------------------p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~ 222 (493)
+.+. |.+.++..||.||+||. .+|.||-+|+..+... .+.-+..|++
T Consensus 337 DsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~~~--------------~~~~t~PEIl 401 (845)
T COG1643 337 DSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDFLA--------------FPEFTLPEIL 401 (845)
T ss_pred cCCcccccccccccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHHHHh--------------cccCCChhhh
Confidence 6542 45788999999999998 4999999999855421 1223446777
Q ss_pred HHHHHHHHHHhcCCCcc-chhhhHHHHHHHHhhhCHHHHHHHHHHHcC
Q 011113 223 ESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQLSG 269 (493)
Q Consensus 223 ~~~~~~~~~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~l~aal~~~~~ 269 (493)
...+..++..++..-.. +...| .+++..+..++.+|+..|..
T Consensus 402 rtdLs~~vL~l~~~G~~~d~~~f-----~fld~P~~~~i~~A~~~L~~ 444 (845)
T COG1643 402 RTDLSGLVLQLKSLGIGQDIAPF-----PFLDPPPEAAIQAALTLLQE 444 (845)
T ss_pred hcchHHHHHHHHhcCCCCCcccC-----ccCCCCChHHHHHHHHHHHH
Confidence 77777777777765542 33333 34555666666666665543
No 76
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.73 E-value=1.8e-17 Score=167.53 Aligned_cols=175 Identities=23% Similarity=0.331 Sum_probs=137.1
Q ss_pred HHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHHc-------
Q 011113 14 LENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA------- 86 (493)
Q Consensus 14 l~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~------- 86 (493)
++++-+..|.|.+|||+.+. .++++++--+.+ ... ..+.+--.|..++....+|.+++..|.+...
T Consensus 366 Lr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV--~y~----~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg 438 (830)
T COG1202 366 LRYLFPGAQFIYLSATVGNP-EELAKKLGAKLV--LYD----ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKG 438 (830)
T ss_pred HHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeE--eec----CCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccC
Confidence 34455689999999999654 346665533333 222 1122223456666668899999988886541
Q ss_pred CCCeEEEEeCChHHHHHHHHHHH-ccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEe---C
Q 011113 87 KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH---Y 162 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~---~ 162 (493)
-.+++|||++++..|..|+..|. +++++.++|++|++.+|..+...|.++++.++|+|-+++.|+|+|.-.+|+. +
T Consensus 439 ~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaM 518 (830)
T COG1202 439 YRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAM 518 (830)
T ss_pred cCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHc
Confidence 14699999999999999999998 5899999999999999999999999999999999999999999998665552 3
Q ss_pred CCC-CChhHHHHHhhccCCCC--CcceEEEecChhh
Q 011113 163 ELP-NDPETFVHRSGRTGRAG--KEGTAILMFTSSQ 195 (493)
Q Consensus 163 ~~p-~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e 195 (493)
+.- .++..|.||+||+||.+ ..|.+|+++.|..
T Consensus 519 G~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 519 GIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred ccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 333 38999999999999987 6699999987743
No 77
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.73 E-value=3.7e-17 Score=168.99 Aligned_cols=231 Identities=19% Similarity=0.321 Sum_probs=171.2
Q ss_pred HHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHH-HHHHHHHHH--cC
Q 011113 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVY--AK 87 (493)
Q Consensus 11 ~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~l~~ll~~~--~~ 87 (493)
+.|++.. ++.++|++|||+..+ ..+.|+++...+.+.+.. ..++.+|...+..+..+ ++..+++.+ .+
T Consensus 187 Kki~~~R-~~LklIimSATlda~---kfS~yF~~a~i~~i~GR~-----fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~ 257 (674)
T KOG0922|consen 187 KKILKKR-PDLKLIIMSATLDAE---KFSEYFNNAPILTIPGRT-----FPVEILYLKEPTADYVDAALITVIQIHLTEP 257 (674)
T ss_pred HHHHhcC-CCceEEEEeeeecHH---HHHHHhcCCceEeecCCC-----CceeEEeccCCchhhHHHHHHHHHHHHccCC
Confidence 3344443 468999999999754 667788887778776543 33566666655555433 334444433 45
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc---C------ceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccE
Q 011113 88 GGKTIVFTQTKRDADEVSLALTSI---I------ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~---~------~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~ 158 (493)
.+-+|||.+..++++.+++.|.+. . .+.++|+.|+.+++.++++.-..|..+|++||++++..|.||.|.+
T Consensus 258 ~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~Y 337 (674)
T KOG0922|consen 258 PGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRY 337 (674)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEE
Confidence 678999999999999999998753 1 2468999999999999999999999999999999999999999999
Q ss_pred EEeCC------------------CCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCCCHHH
Q 011113 159 IIHYE------------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 220 (493)
Q Consensus 159 VI~~~------------------~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~ 220 (493)
||+.+ .|.|.++-.||+||+||.+ +|.||-+|+..+... ++..+..|
T Consensus 338 VVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~--------------~~~~~~PE 402 (674)
T KOG0922|consen 338 VVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDK--------------MPLQTVPE 402 (674)
T ss_pred EEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhh--------------cccCCCCc
Confidence 99654 3568889999999999984 999999999877521 12233445
Q ss_pred HHHHHHHHHHHHhcCCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCC
Q 011113 221 VLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGF 270 (493)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~aal~~~~~~ 270 (493)
+....+..++..|+.+...++-.| ++++...++.+.+||..|.-+
T Consensus 403 I~R~~Ls~~vL~Lkalgi~d~l~F-----~f~d~P~~~~l~~AL~~L~~l 447 (674)
T KOG0922|consen 403 IQRVNLSSAVLQLKALGINDPLRF-----PFIDPPPPEALEEALEELYSL 447 (674)
T ss_pred eeeechHHHHHHHHhcCCCCcccC-----CCCCCCChHHHHHHHHHHHhc
Confidence 555566666777777665555444 456667778888888877543
No 78
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.73 E-value=5.9e-17 Score=184.78 Aligned_cols=160 Identities=19% Similarity=0.297 Sum_probs=120.1
Q ss_pred hCCCCCc--EEEEecc-CChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEE
Q 011113 16 NLPPKRQ--SMLFSAT-MPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTI 92 (493)
Q Consensus 16 ~~~~~~q--~ll~SAT-~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~I 92 (493)
.+|+.+| +++|||| +|..+.. .+++++..+++.. ......++.+.++.... +...|.++++.+ ..++|
T Consensus 260 ~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~--~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~I 330 (1171)
T TIGR01054 260 AIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGG--GSDTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGI 330 (1171)
T ss_pred hhhhccCcEEEEEeCCCCccccHH---HHcccccceEecC--ccccccceEEEEEeccc--HHHHHHHHHHHc--CCCEE
Confidence 4566666 5678999 6766543 3455665566542 23345677777775543 345566777665 36899
Q ss_pred EEeCCh---HHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEe----cccccccCCCCC-ccEEEeCC
Q 011113 93 VFTQTK---RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVA----TDVAARGLDIPN-VDLIIHYE 163 (493)
Q Consensus 93 VF~~t~---~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVa----T~~~~~Gidip~-v~~VI~~~ 163 (493)
|||+|+ +.|++|++.|.+ ++.+..+||+|++ .++++|++|+++|||| ||+++||||+|+ |++|||||
T Consensus 331 VFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~ 406 (1171)
T TIGR01054 331 VYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLG 406 (1171)
T ss_pred EEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEEC
Confidence 999999 999999999986 7999999999973 6899999999999999 599999999999 89999999
Q ss_pred CCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHH
Q 011113 164 LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (493)
Q Consensus 164 ~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~ 203 (493)
+|.. +.+.++..+++.....+..++
T Consensus 407 ~P~~---------------~~~~~~~~~~~~~~~~~~~~~ 431 (1171)
T TIGR01054 407 VPKF---------------KVPLKEALSSPRRLLLLLSIL 431 (1171)
T ss_pred CCCE---------------EEecccccccHHHHHHHHHhh
Confidence 9976 234556666666655555554
No 79
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1e-16 Score=172.97 Aligned_cols=167 Identities=22% Similarity=0.233 Sum_probs=129.5
Q ss_pred cEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEE-EEEEcCcccHHHHHHHHHH-HHcCCCeEEEEeCChH
Q 011113 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLIT-VYAKGGKTIVFTQTKR 99 (493)
Q Consensus 22 q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~-~~~~~~~~IVF~~t~~ 99 (493)
++..||.|...+..++.+.|--+ ++.+. .+++.....+ -.+......|..++...+. .+..+.++||||+|++
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY~l~--vv~IP---tnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~ 451 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIYNME--VITIP---TNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIE 451 (796)
T ss_pred hhhccCCCCHHHHHHHHHHhCCC--EEEcC---CCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHH
Confidence 45568888877666665555322 22222 1221111111 1223344567766666653 4456789999999999
Q ss_pred HHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCC---CCcc-----EEEeCCCCCChhH
Q 011113 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI---PNVD-----LIIHYELPNDPET 170 (493)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi---p~v~-----~VI~~~~p~~~~~ 170 (493)
.++.|+..|.+ ++++..||+++.+.+++.+.++++.|. |+|||++|+||+|| ++|. |||+++.|.+...
T Consensus 452 ~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri 529 (796)
T PRK12906 452 SSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRI 529 (796)
T ss_pred HHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHH
Confidence 99999999985 899999999999999999999988877 99999999999999 4899 9999999999999
Q ss_pred HHHHhhccCCCCCcceEEEecChhh
Q 011113 171 FVHRSGRTGRAGKEGTAILMFTSSQ 195 (493)
Q Consensus 171 y~qr~GR~gR~g~~g~~i~l~~~~e 195 (493)
|.|+.|||||.|.+|.+.+|++..|
T Consensus 530 ~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 530 DNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred HHHHhhhhccCCCCcceEEEEeccc
Confidence 9999999999999999999998765
No 80
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.71 E-value=1.6e-17 Score=162.53 Aligned_cols=180 Identities=23% Similarity=0.356 Sum_probs=139.0
Q ss_pred CCCcEEEEeccCChHHHHHHHH--hcCCCceEEeccccccccccceEEEEEEc---CcccHHHHHHHHHH-HHc------
Q 011113 19 PKRQSMLFSATMPSWVKKLSRK--YLDNPLNIDLVGNQDEKLAEGIKLYAIST---TATSKRTILSDLIT-VYA------ 86 (493)
Q Consensus 19 ~~~q~ll~SAT~p~~v~~l~~~--~l~~~~~i~~~~~~~~~~~~~i~~~~~~~---~~~~k~~~l~~ll~-~~~------ 86 (493)
.+...+.++||....|++-+-. .|++|+.|-.++ ....++ +|-.. .-++.+..|.++.. .+.
T Consensus 175 ~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP----~FR~NL--FYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~ 248 (641)
T KOG0352|consen 175 PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTP----TFRDNL--FYDNHMKSFITDCLTVLADFSSSNLGKHEKAS 248 (641)
T ss_pred CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCc----chhhhh--hHHHHHHHHhhhHhHhHHHHHHHhcCChhhhh
Confidence 4788999999999988875433 455776543211 011111 11110 01122333333321 111
Q ss_pred ---C--CCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEE
Q 011113 87 ---K--GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (493)
Q Consensus 87 ---~--~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI 160 (493)
+ .+-.||||.|+++|++++-.|.. ++.+..+|.+|...+|.++.++|.++++.||+||..+.+|+|-|+|.+||
T Consensus 249 ~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFVi 328 (641)
T KOG0352|consen 249 QNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVI 328 (641)
T ss_pred cCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEE
Confidence 0 23579999999999999999984 89999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHH
Q 011113 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (493)
Q Consensus 161 ~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~ 204 (493)
|+++|.+...|.|..||+||.|+...|-++|...+...+..|.+
T Consensus 329 HW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 329 HWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred ecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 99999999999999999999999999999999999887776643
No 81
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.70 E-value=7.7e-16 Score=162.09 Aligned_cols=105 Identities=17% Similarity=0.308 Sum_probs=89.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc--------cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEE
Q 011113 88 GGKTIVFTQTKRDADEVSLALTS--------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~--------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~V 159 (493)
.+.++||.+-.+....|...|.. .+.+..+|+.++..++.++.+....+..++|++|++++.-|.|.++.+|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 46899999999999998888753 2678899999999999999999999999999999999999999998888
Q ss_pred EeCCC------------------CCChhHHHHHhhccCCCCCcceEEEecCh
Q 011113 160 IHYEL------------------PNDPETFVHRSGRTGRAGKEGTAILMFTS 193 (493)
Q Consensus 160 I~~~~------------------p~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 193 (493)
|+.+. -.+....+||.||++|. ++|.|..++..
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHH
Confidence 85432 23667789999999997 68888888764
No 82
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=1.7e-16 Score=162.65 Aligned_cols=250 Identities=18% Similarity=0.260 Sum_probs=180.0
Q ss_pred HHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHH-HHHHHHH--cCC
Q 011113 12 LILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL-SDLITVY--AKG 88 (493)
Q Consensus 12 ~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l-~~ll~~~--~~~ 88 (493)
.|.+. .++..+|+.||||..+ -.+.|+.+..+..+.+.+ -.+..+|...+..+.+++. ..+++.+ .+.
T Consensus 403 DIar~-RpdLKllIsSAT~DAe---kFS~fFDdapIF~iPGRR-----yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~ 473 (902)
T KOG0923|consen 403 DIARF-RPDLKLLISSATMDAE---KFSAFFDDAPIFRIPGRR-----YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPL 473 (902)
T ss_pred HHHhh-CCcceEEeeccccCHH---HHHHhccCCcEEeccCcc-----cceeeecccCCchhHHHHHHhhheeeEeccCC
Confidence 34433 3588999999999764 456688887776665433 2345567777776665543 3444333 345
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc----------CceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccE
Q 011113 89 GKTIVFTQTKRDADEVSLALTSI----------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~~----------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~ 158 (493)
+-+|||....++.+...+.|... +-+.++|+.||.+.+.+|++.-..|..+|++||++|+..|.|++|.+
T Consensus 474 GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~y 553 (902)
T KOG0923|consen 474 GDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKY 553 (902)
T ss_pred ccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEE
Confidence 78999999999888777776531 45889999999999999999999999999999999999999999999
Q ss_pred EEeCC------------------CCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCCCHHH
Q 011113 159 IIHYE------------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 220 (493)
Q Consensus 159 VI~~~------------------~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~ 220 (493)
||+-+ .|.+.++-.||+||+||.| +|.|+-||+...+ ...||.. . ..+
T Consensus 554 ViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~aY--~~eLE~~--------t---~PE 619 (902)
T KOG0923|consen 554 VIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWAY--EHELEEM--------T---VPE 619 (902)
T ss_pred EecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhhh--hhhhccC--------C---Ccc
Confidence 99543 3567888999999999996 9999999997543 2333322 1 234
Q ss_pred HHHHHHHHHHHHhcCCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHcCCCCCCCCcccccCCCCeEEE
Q 011113 221 VLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289 (493)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~aal~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (493)
+....+..++..|+++-..++-.| ++++....+.|..+|..|..+.+......|+...+.|..+
T Consensus 620 IqRtnL~nvVL~LkSLGI~Dl~~F-----dFmDpPp~etL~~aLE~LyaLGALn~~GeLTk~GrrMaEf 683 (902)
T KOG0923|consen 620 IQRTNLGNVVLLLKSLGIHDLIHF-----DFLDPPPTETLLKALEQLYALGALNHLGELTKLGRRMAEF 683 (902)
T ss_pred eeeccchhHHHHHHhcCcchhccc-----ccCCCCChHHHHHHHHHHHHhhccccccchhhhhhhhhhc
Confidence 445556666777777766666555 5677778889999888887665554444444444444433
No 83
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=6.4e-16 Score=167.91 Aligned_cols=167 Identities=22% Similarity=0.223 Sum_probs=128.3
Q ss_pred EEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEE-EEEEcCcccHHHHHHHHHHH-HcCCCeEEEEeCChHH
Q 011113 23 SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRD 100 (493)
Q Consensus 23 ~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~-~~~~~~~IVF~~t~~~ 100 (493)
+-.||.|...+..++.+-|--+- |.+. .+++.....+ -.+......|..+|...+.. +..+.++||||+|++.
T Consensus 536 LaGMTGTA~te~~Ef~~iY~L~V--v~IP---TnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~ 610 (1025)
T PRK12900 536 LAGMTGTAETEASEFFEIYKLDV--VVIP---TNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEV 610 (1025)
T ss_pred hcccCCCChhHHHHHHHHhCCcE--EECC---CCCCcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHH
Confidence 34578888776666665553222 2222 1111111111 12234445677777776654 3567899999999999
Q ss_pred HHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCC---Ccc-----EEEeCCCCCChhHH
Q 011113 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NVD-----LIIHYELPNDPETF 171 (493)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip---~v~-----~VI~~~~p~~~~~y 171 (493)
++.|+..|.. ++++.+||+ .+.+|+..+.+|+.+...|+||||+|+||+||+ .|. +||+++.|.+...|
T Consensus 611 sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid 688 (1025)
T PRK12900 611 SETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRID 688 (1025)
T ss_pred HHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHH
Confidence 9999999985 899999997 589999999999999999999999999999999 554 45999999999999
Q ss_pred HHHhhccCCCCCcceEEEecChhhH
Q 011113 172 VHRSGRTGRAGKEGTAILMFTSSQR 196 (493)
Q Consensus 172 ~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (493)
.|++|||||.|.+|.+++|++..|.
T Consensus 689 ~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 689 RQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred HHHhhhhhcCCCCcceEEEechhHH
Confidence 9999999999999999999988664
No 84
>PRK09694 helicase Cas3; Provisional
Probab=99.69 E-value=1.6e-15 Score=167.60 Aligned_cols=107 Identities=25% Similarity=0.449 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHcc----CceEEEeCCCCHHHH----HHHHhcc-cCCC---EEEE
Q 011113 74 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI----IASEALHGDISQHQR----ERTLNGF-RQGK---FTVL 141 (493)
Q Consensus 74 k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~----~~~~~lhg~~~~~~r----~~~~~~F-~~g~---~~iL 141 (493)
...++..+++....+.++||||||++.|+++++.|++. +.+..+|+.+++.+| +++++.| ++++ ..||
T Consensus 546 ~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~IL 625 (878)
T PRK09694 546 DLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRIL 625 (878)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEE
Confidence 34566667766667789999999999999999999863 479999999999999 4677888 6665 4799
Q ss_pred EecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCC
Q 011113 142 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 183 (493)
Q Consensus 142 VaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~ 183 (493)
|||+++++|||| ++++||....| .+.|+||+||++|.++
T Consensus 626 VaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 626 VATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999999999 68999998777 6899999999999875
No 85
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.69 E-value=5e-17 Score=127.97 Aligned_cols=76 Identities=39% Similarity=0.768 Sum_probs=72.4
Q ss_pred HHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCC
Q 011113 107 ALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 182 (493)
Q Consensus 107 ~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g 182 (493)
+|+. ++.+..+|+++++.+|+.+++.|+++...|||||+++++|||+|++++||++++|+++..|+|++||++|.|
T Consensus 2 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 4553 789999999999999999999999999999999999999999999999999999999999999999999976
No 86
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.68 E-value=1e-15 Score=164.85 Aligned_cols=119 Identities=24% Similarity=0.338 Sum_probs=101.6
Q ss_pred cHHHHHHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccCC-CEEEEEeccccccc
Q 011113 73 SKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQG-KFTVLVATDVAARG 150 (493)
Q Consensus 73 ~k~~~l~~ll~~~~-~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~g-~~~iLVaT~~~~~G 150 (493)
.|..++..+++.+. .+.++||||.+.+.++.++..| .+..+||.+++.+|++++++|+++ .+++||+|+++.+|
T Consensus 480 ~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeG 555 (732)
T TIGR00603 480 NKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL----GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTS 555 (732)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc----CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccc
Confidence 45666666776653 5679999999999999888877 356799999999999999999875 88999999999999
Q ss_pred CCCCCccEEEeCCCCC-ChhHHHHHhhccCCCCCcceE-------EEecChhh
Q 011113 151 LDIPNVDLIIHYELPN-DPETFVHRSGRTGRAGKEGTA-------ILMFTSSQ 195 (493)
Q Consensus 151 idip~v~~VI~~~~p~-~~~~y~qr~GR~gR~g~~g~~-------i~l~~~~e 195 (493)
||+|++++||+++.|. +...|+||+||++|.+..+.+ |.|+++.+
T Consensus 556 IDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 556 IDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred cCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 9999999999999884 999999999999998765553 77777643
No 87
>PRK13766 Hef nuclease; Provisional
Probab=99.66 E-value=1.6e-15 Score=169.83 Aligned_cols=121 Identities=36% Similarity=0.562 Sum_probs=108.2
Q ss_pred ccHHHHHHHHHHHH---cCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCC--------CCHHHHHHHHhcccCCCEE
Q 011113 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGD--------ISQHQRERTLNGFRQGKFT 139 (493)
Q Consensus 72 ~~k~~~l~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~--------~~~~~r~~~~~~F~~g~~~ 139 (493)
..|...|.++|+.. ..+.++||||+++++|+.|++.|.. ++.+..+||. |++.+|..++++|++++++
T Consensus 346 ~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~ 425 (773)
T PRK13766 346 HPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFN 425 (773)
T ss_pred ChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCC
Confidence 35777777777664 3568999999999999999999975 7888889886 9999999999999999999
Q ss_pred EEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecCh
Q 011113 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 193 (493)
Q Consensus 140 iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~ 193 (493)
|||||+++++|+|+|++++||+||+|++...|+||+||+||.+ ++.+++++..
T Consensus 426 vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~ 478 (773)
T PRK13766 426 VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAK 478 (773)
T ss_pred EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeC
Confidence 9999999999999999999999999999999999999999986 4778887764
No 88
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.66 E-value=1.5e-15 Score=160.75 Aligned_cols=123 Identities=33% Similarity=0.535 Sum_probs=104.1
Q ss_pred ccHHHHHHHHHHHH---cCCCeEEEEeCChHHHHHHHHHHHc----cCceEEEe--------CCCCHHHHHHHHhcccCC
Q 011113 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS----IIASEALH--------GDISQHQRERTLNGFRQG 136 (493)
Q Consensus 72 ~~k~~~l~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lh--------g~~~~~~r~~~~~~F~~g 136 (493)
..|++.+.+++..+ .+..++||||.+|+.|+.|..+|.. .+....+- -+|+|.++.+++++|++|
T Consensus 394 npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G 473 (746)
T KOG0354|consen 394 NPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG 473 (746)
T ss_pred ChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCC
Confidence 45777776666443 3457999999999999999999873 23333333 379999999999999999
Q ss_pred CEEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhH
Q 011113 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (493)
Q Consensus 137 ~~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (493)
+++|||||+++++||||++|++||.||.-.++...+||.|| ||+ +.|.++++++..+.
T Consensus 474 ~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 474 EINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEV 531 (746)
T ss_pred CccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhH
Confidence 99999999999999999999999999999999999999999 998 68899998885443
No 89
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.63 E-value=3.6e-14 Score=148.41 Aligned_cols=177 Identities=18% Similarity=0.312 Sum_probs=132.6
Q ss_pred HHHhCCC-CCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeE
Q 011113 13 ILENLPP-KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKT 91 (493)
Q Consensus 13 Il~~~~~-~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~ 91 (493)
.|..-.. .+-+|+||||.=+....+. .+.|-. +.+. .+.++..........+.+.+.+++..+.+...++.++
T Consensus 403 ~L~~KG~~~Ph~LvMTATPIPRTLAlt--~fgDld-vS~I---dElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQa 476 (677)
T COG1200 403 ALREKGEQNPHVLVMTATPIPRTLALT--AFGDLD-VSII---DELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQA 476 (677)
T ss_pred HHHHhCCCCCcEEEEeCCCchHHHHHH--Hhcccc-chhh---ccCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEE
Confidence 3444444 6789999999644333333 333322 2111 1122222223344455567888888888888888999
Q ss_pred EEEeCChH--------HHHHHHHHHHc---cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEE
Q 011113 92 IVFTQTKR--------DADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (493)
Q Consensus 92 IVF~~t~~--------~~~~l~~~L~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI 160 (493)
.|.|+-.+ .|+++++.|+. .+.+..+||.|+.+++++++++|++++++|||||.|.+.|||+|+.+++|
T Consensus 477 Y~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMV 556 (677)
T COG1200 477 YVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMV 556 (677)
T ss_pred EEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEE
Confidence 99998665 45567777774 35688999999999999999999999999999999999999999999988
Q ss_pred eCCCCC-ChhHHHHHhhccCCCCCcceEEEecChhh
Q 011113 161 HYELPN-DPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (493)
Q Consensus 161 ~~~~p~-~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (493)
.++.-. -.+++.|-.||+||......|++++.+..
T Consensus 557 Ie~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 557 IENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 877543 57889999999999999999999998766
No 90
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.60 E-value=3.3e-14 Score=154.68 Aligned_cols=245 Identities=19% Similarity=0.250 Sum_probs=167.6
Q ss_pred CcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccc--------------cceEEEE---
Q 011113 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLA--------------EGIKLYA--- 66 (493)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~--------------~~i~~~~--- 66 (493)
..|.--+.+.+-...++.++||||||+.. ++.+.|+....++.+.+...+... ....++.
T Consensus 303 ~DflLi~lk~lL~~~p~LkvILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~ 379 (924)
T KOG0920|consen 303 TDFLLILLKDLLPRNPDLKVILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPE 379 (924)
T ss_pred cccHHHHHHHHhhhCCCceEEEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccc
Confidence 33444333333333469999999999974 367778887777766543322100 0001110
Q ss_pred --------E-EcCcccHHHHHHHHHHHHc---CCCeEEEEeCChHHHHHHHHHHHc--------cCceEEEeCCCCHHHH
Q 011113 67 --------I-STTATSKRTILSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS--------IIASEALHGDISQHQR 126 (493)
Q Consensus 67 --------~-~~~~~~k~~~l~~ll~~~~---~~~~~IVF~~t~~~~~~l~~~L~~--------~~~~~~lhg~~~~~~r 126 (493)
+ ....+...+++.+++..+. ..+.+|||.+...++..+++.|.. .+.+.++|+.|+..++
T Consensus 380 ~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ 459 (924)
T KOG0920|consen 380 RSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQ 459 (924)
T ss_pred cCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHH
Confidence 0 0011234566666665552 357899999999999999999963 1557889999999999
Q ss_pred HHHHhcccCCCEEEEEecccccccCCCCCccEEEe--------CCCC----------CChhHHHHHhhccCCCCCcceEE
Q 011113 127 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH--------YELP----------NDPETFVHRSGRTGRAGKEGTAI 188 (493)
Q Consensus 127 ~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~--------~~~p----------~~~~~y~qr~GR~gR~g~~g~~i 188 (493)
+.+++....|..+||+||++|+..|.|++|.+||+ ||+- .+...-.||.|||||. ++|.||
T Consensus 460 ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy 538 (924)
T KOG0920|consen 460 QAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICY 538 (924)
T ss_pred HHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeE
Confidence 99999999999999999999999999999999995 4432 2456668999999998 799999
Q ss_pred EecChhhHHHHHHHHHHhCCCceeeCCCCHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHc
Q 011113 189 LMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 268 (493)
Q Consensus 189 ~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~aal~~~~ 268 (493)
.+|+......+. ..-...|++...++++...++-+....+.. ...++++...++++..|+..|.
T Consensus 539 ~L~~~~~~~~~~-------------~~~q~PEilR~pL~~l~L~iK~l~~~~~~~---fLskaldpP~~~~v~~a~~~L~ 602 (924)
T KOG0920|consen 539 HLYTRSRYEKLM-------------LAYQLPEILRTPLEELCLHIKVLEQGSIKA---FLSKALDPPPADAVDLAIERLK 602 (924)
T ss_pred Eeechhhhhhcc-------------cccCChHHHhChHHHhhheeeeccCCCHHH---HHHHhcCCCChHHHHHHHHHHH
Confidence 999985542211 112235666666666666666555554443 3446677777777777766664
No 91
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.60 E-value=1e-13 Score=139.85 Aligned_cols=168 Identities=24% Similarity=0.334 Sum_probs=133.1
Q ss_pred CCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCChH
Q 011113 20 KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKR 99 (493)
Q Consensus 20 ~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~ 99 (493)
..|+|.+|||..++-.+... ..+|+-+-.+...+.+. ..+.....+..+++..+.+....+.++||-+-|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s~-----~~vveQiIRPTGLlDP~---ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG-----GNVVEQIIRPTGLLDPE---IEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhcc-----CceeEEeecCCCCCCCc---eeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 46999999999887554432 12222221222222222 22334445667777777777778899999999999
Q ss_pred HHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCC-----CCCChhHHHH
Q 011113 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE-----LPNDPETFVH 173 (493)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~-----~p~~~~~y~q 173 (493)
.|+.|.++|.+ ++++.++|+++..-+|.+++..+|.|.++|||.-+.+-.|||+|.|.+|..+| +..+..+++|
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 99999999996 89999999999999999999999999999999999999999999999998776 5578999999
Q ss_pred HhhccCCCCCcceEEEecChhhH
Q 011113 174 RSGRTGRAGKEGTAILMFTSSQR 196 (493)
Q Consensus 174 r~GR~gR~g~~g~~i~l~~~~e~ 196 (493)
-+|||+|. -.|.+|++.+.-..
T Consensus 538 tIGRAARN-~~GkvIlYAD~iT~ 559 (663)
T COG0556 538 TIGRAARN-VNGKVILYADKITD 559 (663)
T ss_pred HHHHHhhc-cCCeEEEEchhhhH
Confidence 99999995 57899998765433
No 92
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.60 E-value=1.3e-14 Score=158.86 Aligned_cols=173 Identities=23% Similarity=0.368 Sum_probs=122.2
Q ss_pred CCCcEEEEeccCChHHHHHHHHhcC-CCceEEeccccccccccceEEEEEEc------CcccHHHHHHHHHHHHcCCCeE
Q 011113 19 PKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAIST------TATSKRTILSDLITVYAKGGKT 91 (493)
Q Consensus 19 ~~~q~ll~SAT~p~~v~~l~~~~l~-~~~~i~~~~~~~~~~~~~i~~~~~~~------~~~~k~~~l~~ll~~~~~~~~~ 91 (493)
...|++.+|||+|+. .+++. |++ ++........+..........++... +.......+..++..+..++++
T Consensus 179 ~~~rivgLSATlpN~-~evA~-wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qv 256 (766)
T COG1204 179 ELIRIVGLSATLPNA-EEVAD-WLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQV 256 (766)
T ss_pred cceEEEEEeeecCCH-HHHHH-HhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeE
Confidence 348999999999873 44443 554 22211111111111111111111111 1113345566667777788999
Q ss_pred EEEeCChHHHHHHHHHHHcc--------------------------------------CceEEEeCCCCHHHHHHHHhcc
Q 011113 92 IVFTQTKRDADEVSLALTSI--------------------------------------IASEALHGDISQHQRERTLNGF 133 (493)
Q Consensus 92 IVF~~t~~~~~~l~~~L~~~--------------------------------------~~~~~lhg~~~~~~r~~~~~~F 133 (493)
||||++++.+...+..|.+. ..+..+|.+|+.++|+.+.+.|
T Consensus 257 LvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~F 336 (766)
T COG1204 257 LVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAF 336 (766)
T ss_pred EEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHH
Confidence 99999999999988888731 1356789999999999999999
Q ss_pred cCCCEEEEEecccccccCCCCCccEEE----eCC-----CCCChhHHHHHhhccCCCC--CcceEEEecCh
Q 011113 134 RQGKFTVLVATDVAARGLDIPNVDLII----HYE-----LPNDPETFVHRSGRTGRAG--KEGTAILMFTS 193 (493)
Q Consensus 134 ~~g~~~iLVaT~~~~~Gidip~v~~VI----~~~-----~p~~~~~y~qr~GR~gR~g--~~g~~i~l~~~ 193 (493)
+.|+++|||||+.+++|+|+|.-.+|| -|+ .+.++-+|+||+|||||.| ..|.++++.+.
T Consensus 337 r~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~ 407 (766)
T COG1204 337 RKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATS 407 (766)
T ss_pred hcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecC
Confidence 999999999999999999999988888 366 5668899999999999988 45777777743
No 93
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.58 E-value=1.3e-14 Score=140.11 Aligned_cols=189 Identities=22% Similarity=0.359 Sum_probs=147.1
Q ss_pred HHHHHHH--HHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHH
Q 011113 6 FEEDVEL--ILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 83 (493)
Q Consensus 6 F~~~l~~--Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~ 83 (493)
|+.|... ||+.--+...+|.++||..+.|..-++..+.-...+++.. ..+ ..++. |.+...+....+.+.++.+
T Consensus 234 fr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a-~fn--r~nl~-yev~qkp~n~dd~~edi~k 309 (695)
T KOG0353|consen 234 FRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRA-GFN--RPNLK-YEVRQKPGNEDDCIEDIAK 309 (695)
T ss_pred cCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeec-ccC--CCCce-eEeeeCCCChHHHHHHHHH
Confidence 5555543 4555556899999999999888877776654322222221 111 22333 3334444455555555555
Q ss_pred HH---cCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEE
Q 011113 84 VY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (493)
Q Consensus 84 ~~---~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~V 159 (493)
.+ ..+...||||-++++|+.++..|++ ++.+..+|..|.+.++..+-+.+..|+++|+|||-+..+|||-|+|.+|
T Consensus 310 ~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfv 389 (695)
T KOG0353|consen 310 LIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFV 389 (695)
T ss_pred HhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEE
Confidence 44 3456889999999999999999996 8999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCChhHHHH-------------------------------------------HhhccCCCCCcceEEEecChhhH
Q 011113 160 IHYELPNDPETFVH-------------------------------------------RSGRTGRAGKEGTAILMFTSSQR 196 (493)
Q Consensus 160 I~~~~p~~~~~y~q-------------------------------------------r~GR~gR~g~~g~~i~l~~~~e~ 196 (493)
||..+|.+.+.|.| ..||+||.+.+..||++|.-.+.
T Consensus 390 ihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 390 IHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred EecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 99999999999999 78999999999999999876554
Q ss_pred HH
Q 011113 197 RT 198 (493)
Q Consensus 197 ~~ 198 (493)
..
T Consensus 470 fk 471 (695)
T KOG0353|consen 470 FK 471 (695)
T ss_pred Hh
Confidence 33
No 94
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.58 E-value=1.3e-14 Score=149.30 Aligned_cols=223 Identities=19% Similarity=0.312 Sum_probs=158.0
Q ss_pred CCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHH-HHHHHHHHH--cCCCeEEEEe
Q 011113 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVY--AKGGKTIVFT 95 (493)
Q Consensus 19 ~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~l~~ll~~~--~~~~~~IVF~ 95 (493)
.+..+|.+||||.. +.+ ..|+.+.....+.+.. -.++..|...+.++..+ ++.+.+..+ ...+-+|||.
T Consensus 499 rdlKliVtSATm~a--~kf-~nfFgn~p~f~IpGRT-----yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfm 570 (1042)
T KOG0924|consen 499 RDLKLIVTSATMDA--QKF-SNFFGNCPQFTIPGRT-----YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFM 570 (1042)
T ss_pred ccceEEEeeccccH--HHH-HHHhCCCceeeecCCc-----cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEec
Confidence 47899999999954 344 4567766666655432 22445565555555443 334444333 2357899999
Q ss_pred CChHHHHHHHHHHH----c-------cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCC-
Q 011113 96 QTKRDADEVSLALT----S-------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE- 163 (493)
Q Consensus 96 ~t~~~~~~l~~~L~----~-------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~- 163 (493)
...+.++..+..+. + .+.+.++++.||+..+.++++.-..+..+++|||++|+..|.||.+.+||+.+
T Consensus 571 tGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy 650 (1042)
T KOG0924|consen 571 TGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGY 650 (1042)
T ss_pred CCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCc
Confidence 98887665554443 2 25689999999999999999999999999999999999999999999999655
Q ss_pred -----------------CCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCCCHHHHHHHHH
Q 011113 164 -----------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 226 (493)
Q Consensus 164 -----------------~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~ 226 (493)
.|.+.+.-.||+|||||.+ +|.||-+|+..... ..+.+.+..++....+
T Consensus 651 ~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ay~-------------~eml~stvPEIqRTNl 716 (1042)
T KOG0924|consen 651 CKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTEDAYK-------------NEMLPSTVPEIQRTNL 716 (1042)
T ss_pred eeeeecccccccceeEEEechhccchhhccccCCCC-CcceeeehhhhHHH-------------hhcccCCCchhhhcch
Confidence 3667888899999999985 89999999874421 1122334556666667
Q ss_pred HHHHHHhcCCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHc
Q 011113 227 EQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 268 (493)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~aal~~~~ 268 (493)
..++..|+++..+++..| ++++....+.+.+++..|.
T Consensus 717 ~nvVLlLkslgV~dll~F-----dFmD~Pped~~~~sly~Lw 753 (1042)
T KOG0924|consen 717 SNVVLLLKSLGVDDLLKF-----DFMDPPPEDNLLNSLYQLW 753 (1042)
T ss_pred hhHHHHHHhcChhhhhCC-----CcCCCCHHHHHHHHHHHHH
Confidence 777777777665555544 3455555667777777664
No 95
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.58 E-value=3.3e-14 Score=150.21 Aligned_cols=93 Identities=27% Similarity=0.461 Sum_probs=77.9
Q ss_pred HHHHHHHHHcc---CceEEEeCCCCHHHH--HHHHhcccCCCEEEEEecccccccCCCCCccEEE--eCCC----CC---
Q 011113 101 ADEVSLALTSI---IASEALHGDISQHQR--ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII--HYEL----PN--- 166 (493)
Q Consensus 101 ~~~l~~~L~~~---~~~~~lhg~~~~~~r--~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI--~~~~----p~--- 166 (493)
++.+.+.|.+. ..+..+|+++++.++ +++++.|++++++|||+|+++++|+|+|+|++|+ ++|. |.
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra 350 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRA 350 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccch
Confidence 57788888763 568899999987766 8999999999999999999999999999999875 6664 32
Q ss_pred ---ChhHHHHHhhccCCCCCcceEEEecCh
Q 011113 167 ---DPETFVHRSGRTGRAGKEGTAILMFTS 193 (493)
Q Consensus 167 ---~~~~y~qr~GR~gR~g~~g~~i~l~~~ 193 (493)
....|+|++||+||.++.|.+++....
T Consensus 351 ~E~~~~ll~q~~GRagR~~~~g~viiqt~~ 380 (505)
T TIGR00595 351 AERGFQLLTQVAGRAGRAEDPGQVIIQTYN 380 (505)
T ss_pred HHHHHHHHHHHHhccCCCCCCCEEEEEeCC
Confidence 246689999999999999999875533
No 96
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.54 E-value=1.4e-13 Score=150.52 Aligned_cols=101 Identities=23% Similarity=0.368 Sum_probs=82.2
Q ss_pred HHHHHHHHHHc---cCceEEEeCCCCH--HHHHHHHhcccCCCEEEEEecccccccCCCCCccEEE--eCCCCCCh----
Q 011113 100 DADEVSLALTS---IIASEALHGDISQ--HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII--HYELPNDP---- 168 (493)
Q Consensus 100 ~~~~l~~~L~~---~~~~~~lhg~~~~--~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI--~~~~p~~~---- 168 (493)
.++.+++.|.+ ...+..+|+++++ .+++++++.|++++++|||+|+++++|+|+|+|++|+ ++|.+.+.
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfr 517 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFR 517 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccc
Confidence 45677777875 4578899999974 6789999999999999999999999999999999985 55655433
Q ss_pred ------hHHHHHhhccCCCCCcceEEEecChhhHHHHH
Q 011113 169 ------ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVR 200 (493)
Q Consensus 169 ------~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~ 200 (493)
..|+|++||+||.++.|.+++.....+...++
T Consensus 518 a~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~ 555 (679)
T PRK05580 518 ASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQ 555 (679)
T ss_pred hHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHH
Confidence 56899999999999999999876554433333
No 97
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.54 E-value=3.9e-13 Score=129.00 Aligned_cols=179 Identities=19% Similarity=0.281 Sum_probs=122.9
Q ss_pred CCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHH------HHHHHHH-HHcCCC
Q 011113 17 LPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT------ILSDLIT-VYAKGG 89 (493)
Q Consensus 17 ~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~------~l~~ll~-~~~~~~ 89 (493)
..++--+|.+|||.|+.+++-+.+- +-..+.+. .+.+..+..+..+...-++..++. .|...|+ ....+.
T Consensus 230 rk~~g~~IylTATp~k~l~r~~~~g--~~~~~klp-~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~ 306 (441)
T COG4098 230 RKKEGATIYLTATPTKKLERKILKG--NLRILKLP-ARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGR 306 (441)
T ss_pred hcccCceEEEecCChHHHHHHhhhC--CeeEeecc-hhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCC
Confidence 3456789999999998765544321 22223322 222222333333444344433331 3344443 334568
Q ss_pred eEEEEeCChHHHHHHHHHHHcc---CceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEe-CCCC
Q 011113 90 KTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH-YELP 165 (493)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~~---~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~-~~~p 165 (493)
+++||+++.+..+++++.|+.. ..+..+|+. ...|.+..++||+|+++|||+|.+++||+.+|+|+++|. ..-+
T Consensus 307 P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~ 384 (441)
T COG4098 307 PVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHR 384 (441)
T ss_pred cEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcc
Confidence 9999999999999999999754 346788887 467889999999999999999999999999999998664 3332
Q ss_pred -CChhHHHHHhhccCCCC--CcceEEEecChhhHHHHH
Q 011113 166 -NDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTVR 200 (493)
Q Consensus 166 -~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e~~~~~ 200 (493)
.+.+.++|.+||+||.- -+|.++.|-......+.+
T Consensus 385 vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~ 422 (441)
T COG4098 385 VFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQ 422 (441)
T ss_pred cccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHHH
Confidence 58899999999999954 457777775554444433
No 98
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.54 E-value=6.8e-13 Score=146.20 Aligned_cols=187 Identities=18% Similarity=0.295 Sum_probs=140.7
Q ss_pred HHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCe
Q 011113 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGK 90 (493)
Q Consensus 11 ~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~ 90 (493)
++-++.+..+.-+|-+|||+=+....++-.-+++-..|...+ .++ ..|+-+.. +. +...+-..++..+..+++
T Consensus 733 KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP--~~R--~pV~T~V~--~~-d~~~ireAI~REl~RgGQ 805 (1139)
T COG1197 733 KEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPP--EDR--LPVKTFVS--EY-DDLLIREAILRELLRGGQ 805 (1139)
T ss_pred HHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCC--CCC--cceEEEEe--cC-ChHHHHHHHHHHHhcCCE
Confidence 455667777889999999975555556555666666554321 111 12222222 22 222233445566678899
Q ss_pred EEEEeCChHHHHHHHHHHHcc---CceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCCCC-C
Q 011113 91 TIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP-N 166 (493)
Q Consensus 91 ~IVF~~t~~~~~~l~~~L~~~---~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~~p-~ 166 (493)
+-...|..+..+.+++.|+.- ..+.+.||.|+..+-+.++..|-+++++|||||.+.+.|||||+++.+|.-+.- .
T Consensus 806 vfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~f 885 (1139)
T COG1197 806 VFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKF 885 (1139)
T ss_pred EEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccc
Confidence 999999999999999999874 468899999999999999999999999999999999999999999998854432 3
Q ss_pred ChhHHHHHhhccCCCCCcceEEEecChh------hHHHHHHHHH
Q 011113 167 DPETFVHRSGRTGRAGKEGTAILMFTSS------QRRTVRSLER 204 (493)
Q Consensus 167 ~~~~y~qr~GR~gR~g~~g~~i~l~~~~------e~~~~~~l~~ 204 (493)
-.+++.|..||+||..+.+.||+++.+. ..++++.|++
T Consensus 886 GLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 886 GLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred cHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHh
Confidence 5789999999999999999999998753 3456666655
No 99
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.53 E-value=2.5e-14 Score=112.97 Aligned_cols=80 Identities=53% Similarity=0.867 Sum_probs=74.5
Q ss_pred HHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCC
Q 011113 103 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 181 (493)
Q Consensus 103 ~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~ 181 (493)
.+++.|.. .+.+..+|+++++.+|..+++.|+++...|||+|+++++|+|+|++++||.+++|++...|+|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 45666664 68899999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 011113 182 G 182 (493)
Q Consensus 182 g 182 (493)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 100
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.49 E-value=5.5e-13 Score=148.00 Aligned_cols=194 Identities=20% Similarity=0.333 Sum_probs=142.3
Q ss_pred HHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcC---------cccHHHHHHH
Q 011113 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT---------ATSKRTILSD 80 (493)
Q Consensus 10 l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~---------~~~k~~~l~~ 80 (493)
|..++...+.+.|+|+.|||+.+. .++++++......+.+. ....+....++....+ ..++...+..
T Consensus 222 L~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~---~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~ 297 (851)
T COG1205 222 LLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVD---EDGSPRGLRYFVRREPPIRELAESIRRSALAELAT 297 (851)
T ss_pred HHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeecc---CCCCCCCceEEEEeCCcchhhhhhcccchHHHHHH
Confidence 445555566789999999999654 34566666655444332 2223344444444444 2244444444
Q ss_pred HHHHH-cCCCeEEEEeCChHHHHHHHHHHH-----cc----CceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccccccc
Q 011113 81 LITVY-AKGGKTIVFTQTKRDADEVSLALT-----SI----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (493)
Q Consensus 81 ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~-----~~----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~G 150 (493)
++... ..+-++|+|+.++..++.++.... .. ..+..++++|...+|.+++..|++|++.++++|++++.|
T Consensus 298 ~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Alelg 377 (851)
T COG1205 298 LAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELG 377 (851)
T ss_pred HHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhc
Confidence 44433 456799999999999999973332 23 358889999999999999999999999999999999999
Q ss_pred CCCCCccEEEeCCCCC-ChhHHHHHhhccCCCCCcceEEEecC--hhhHHHHHHHHHHhC
Q 011113 151 LDIPNVDLIIHYELPN-DPETFVHRSGRTGRAGKEGTAILMFT--SSQRRTVRSLERDVG 207 (493)
Q Consensus 151 idip~v~~VI~~~~p~-~~~~y~qr~GR~gR~g~~g~~i~l~~--~~e~~~~~~l~~~~~ 207 (493)
|||.+++.||.+..|. +..+++||+||+||.++....++++. +.+..++...+....
T Consensus 378 idiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 378 IDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred eeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 9999999999999999 89999999999999987777666654 345555555555554
No 101
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.49 E-value=2.6e-13 Score=145.30 Aligned_cols=117 Identities=29% Similarity=0.478 Sum_probs=99.4
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHcc---------------------------------------CceEEEeCCCCHHHHH
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTSI---------------------------------------IASEALHGDISQHQRE 127 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~---------------------------------------~~~~~lhg~~~~~~r~ 127 (493)
++.++||||++++.|+.++..+... +.+.++|.+++.++|+
T Consensus 459 e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~ 538 (1008)
T KOG0950|consen 459 EGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEERE 538 (1008)
T ss_pred cCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHH
Confidence 3457999999999999888665321 2477899999999999
Q ss_pred HHHhcccCCCEEEEEecccccccCCCCCccEEEeCC----CCCChhHHHHHhhccCCCC--CcceEEEecChhhHHHHHH
Q 011113 128 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE----LPNDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTVRS 201 (493)
Q Consensus 128 ~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~----~p~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e~~~~~~ 201 (493)
.+...|++|.+.|++||+.++.|+++|...++|-.- .+.+.-.|.||+|||||+| ..|.+++++.+.+...+..
T Consensus 539 ~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~ 618 (1008)
T KOG0950|consen 539 IIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRE 618 (1008)
T ss_pred HHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHH
Confidence 999999999999999999999999999999888532 2357889999999999998 5699999999999876665
Q ss_pred HH
Q 011113 202 LE 203 (493)
Q Consensus 202 l~ 203 (493)
+.
T Consensus 619 lv 620 (1008)
T KOG0950|consen 619 LV 620 (1008)
T ss_pred HH
Confidence 53
No 102
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.47 E-value=5.7e-13 Score=147.16 Aligned_cols=171 Identities=22% Similarity=0.238 Sum_probs=120.9
Q ss_pred CCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccH--HHHHHHHHHHHcCCCeEEEEeCC
Q 011113 20 KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK--RTILSDLITVYAKGGKTIVFTQT 97 (493)
Q Consensus 20 ~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k--~~~l~~ll~~~~~~~~~IVF~~t 97 (493)
+..+|++|||+|+...+.++.++.+...+.......................... ...+........+..+++|.|||
T Consensus 370 g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NT 449 (733)
T COG1203 370 GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNT 449 (733)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEec
Confidence 6899999999999999988888776554433211000000000001111111111 12334444555677899999999
Q ss_pred hHHHHHHHHHHHccC-ceEEEeCCCCHHHHHHHHhccc----CCCEEEEEecccccccCCCCCccEEEeCCCCCChhHHH
Q 011113 98 KRDADEVSLALTSII-ASEALHGDISQHQRERTLNGFR----QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172 (493)
Q Consensus 98 ~~~~~~l~~~L~~~~-~~~~lhg~~~~~~r~~~~~~F~----~g~~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~ 172 (493)
++.|.+++..|+... .+..+|+.+...+|.+.++.++ .....|+|||+|++.|+||. .+++|-= +..+++++
T Consensus 450 V~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe--~aPidSLI 526 (733)
T COG1203 450 VDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITE--LAPIDSLI 526 (733)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeec--CCCHHHHH
Confidence 999999999999744 4999999999999988888554 46778999999999999994 7766642 45688999
Q ss_pred HHhhccCCCC--CcceEEEecCh
Q 011113 173 HRSGRTGRAG--KEGTAILMFTS 193 (493)
Q Consensus 173 qr~GR~gR~g--~~g~~i~l~~~ 193 (493)
||+||++|.| ..+..+++...
T Consensus 527 QR~GRv~R~g~~~~~~~~v~~~~ 549 (733)
T COG1203 527 QRAGRVNRHGKKENGKIYVYNDE 549 (733)
T ss_pred HHHHHHhhcccccCCceeEeecc
Confidence 9999999999 56777777544
No 103
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.46 E-value=2.3e-12 Score=128.52 Aligned_cols=225 Identities=17% Similarity=0.312 Sum_probs=163.4
Q ss_pred HHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHH-HHHHHHH--cC
Q 011113 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL-SDLITVY--AK 87 (493)
Q Consensus 11 ~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l-~~ll~~~--~~ 87 (493)
++++..-| +..+|.+|||+... ..+.|+.|+..+.+.+ ...++.+|...+..+.+++. ..+++.+ ..
T Consensus 183 k~v~~~rp-dLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg------~~PvEi~Yt~e~erDylEaairtV~qih~~ee 252 (699)
T KOG0925|consen 183 KEVVRNRP-DLKLVVMSATLDAE---KFQRYFGNAPLLAVPG------THPVEIFYTPEPERDYLEAAIRTVLQIHMCEE 252 (699)
T ss_pred HHHHhhCC-CceEEEeecccchH---HHHHHhCCCCeeecCC------CCceEEEecCCCChhHHHHHHHHHHHHHhccC
Confidence 34455554 89999999998543 5567888888887643 23345577666666665544 4444444 34
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc----------CceEEEeCCCCHHHHHHHHhcccCC-----CEEEEEecccccccCC
Q 011113 88 GGKTIVFTQTKRDADEVSLALTSI----------IASEALHGDISQHQRERTLNGFRQG-----KFTVLVATDVAARGLD 152 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~----------~~~~~lhg~~~~~~r~~~~~~F~~g-----~~~iLVaT~~~~~Gid 152 (493)
++-+|||....++++..++.+.+. +.|.+|| +.++..+++..... ..+|+|+|++++..+.
T Consensus 253 ~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetslt 328 (699)
T KOG0925|consen 253 PGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLT 328 (699)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeee
Confidence 678999999999999998888631 5688888 55666666665432 3589999999999999
Q ss_pred CCCccEEEeCC------------------CCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeC
Q 011113 153 IPNVDLIIHYE------------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (493)
Q Consensus 153 ip~v~~VI~~~------------------~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (493)
|+.|.+||+-+ .|.+..+-.||.||+||. ++|.|+.+|+..-. . .++.
T Consensus 329 idgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~~~----------~---~em~ 394 (699)
T KOG0925|consen 329 IDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF----------E---KEMQ 394 (699)
T ss_pred eccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHHhh----------h---hcCC
Confidence 99999999644 266888899999999997 79999999987442 1 1233
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCccchhhhHHHHHHHHhhhCHHHHHHHHHHHc
Q 011113 215 PPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 268 (493)
Q Consensus 215 ~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~aal~~~~ 268 (493)
+-+..+++++.+..++..|+.+..+++-.| ++++...+|.|..||-.|.
T Consensus 395 ~~typeilrsNL~s~VL~LKklgI~dlvhf-----dfmDpPAPEtLMrALE~Ln 443 (699)
T KOG0925|consen 395 PQTYPEILRSNLSSTVLQLKKLGIDDLVHF-----DFMDPPAPETLMRALEVLN 443 (699)
T ss_pred CCCcHHHHHHhhHHHHHHHHhcCcccccCC-----cCCCCCChHHHHHHHHHhh
Confidence 445678888888888888888776665555 4556667777777776664
No 104
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.44 E-value=1.6e-12 Score=141.39 Aligned_cols=167 Identities=20% Similarity=0.182 Sum_probs=128.0
Q ss_pred cEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEE-EEEEcCcccHHHHHHHHHHH-HcCCCeEEEEeCChH
Q 011113 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKR 99 (493)
Q Consensus 22 q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l~~ll~~-~~~~~~~IVF~~t~~ 99 (493)
.+..||.|...+..++.+.|--+. +.+. .+++.....+ -.+......|..++...+.. +..+.++||||+|++
T Consensus 367 kl~GmTGTa~te~~E~~~iY~l~v--v~IP---tnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~ 441 (830)
T PRK12904 367 KLAGMTGTADTEAEEFREIYNLDV--VVIP---TNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIE 441 (830)
T ss_pred hhcccCCCcHHHHHHHHHHhCCCE--EEcC---CCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 355688998777666666553332 2222 1221111111 12233445677777776644 456789999999999
Q ss_pred HHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCc----------------------
Q 011113 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV---------------------- 156 (493)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v---------------------- 156 (493)
.++.|+..|.+ ++++..||+. +.+|+..+.+|+.+...|+||||+|+||+||+-=
T Consensus 442 ~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~ 519 (830)
T PRK12904 442 KSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKI 519 (830)
T ss_pred HHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHH
Confidence 99999999985 7999999996 8899999999999999999999999999999642
Q ss_pred ----------------cEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhh
Q 011113 157 ----------------DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (493)
Q Consensus 157 ----------------~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (493)
=|||-...|.+..---|-.||+||.|.+|.+-.|++-.|
T Consensus 520 ~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 520 KAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred HHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 278889999999999999999999999999999987654
No 105
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.44 E-value=3.1e-12 Score=136.35 Aligned_cols=117 Identities=29% Similarity=0.396 Sum_probs=95.1
Q ss_pred HHHHHHHHcC--CCeEEEEeCChHHHHHHHHHHHcc-C---------------------------------------ceE
Q 011113 78 LSDLITVYAK--GGKTIVFTQTKRDADEVSLALTSI-I---------------------------------------ASE 115 (493)
Q Consensus 78 l~~ll~~~~~--~~~~IVF~~t~~~~~~l~~~L~~~-~---------------------------------------~~~ 115 (493)
+.+++..+.+ --++||||-+++.|++.++.|... + .+.
T Consensus 555 ~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGia 634 (1248)
T KOG0947|consen 555 WLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIA 634 (1248)
T ss_pred HHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcch
Confidence 4444444422 248999999999999999998641 0 367
Q ss_pred EEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCC--------CCCChhHHHHHhhccCCCC--Ccc
Q 011113 116 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE--------LPNDPETFVHRSGRTGRAG--KEG 185 (493)
Q Consensus 116 ~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~--------~p~~~~~y~qr~GR~gR~g--~~g 185 (493)
++||++-+--++-+..-|..|-++||+||..+|+|+|+|.-.+|+..= .-..+-.|.||+|||||.| .+|
T Consensus 635 VHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tG 714 (1248)
T KOG0947|consen 635 VHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETG 714 (1248)
T ss_pred hhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCc
Confidence 789999999999999999999999999999999999999988888411 1236789999999999988 779
Q ss_pred eEEEecChh
Q 011113 186 TAILMFTSS 194 (493)
Q Consensus 186 ~~i~l~~~~ 194 (493)
+++++....
T Consensus 715 TVii~~~~~ 723 (1248)
T KOG0947|consen 715 TVIIMCKDS 723 (1248)
T ss_pred eEEEEecCC
Confidence 999887643
No 106
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=5.2e-12 Score=137.61 Aligned_cols=166 Identities=19% Similarity=0.163 Sum_probs=124.6
Q ss_pred EEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEE-EEEEcCcccHHHHH-HHHHHHHcCCCeEEEEeCChHH
Q 011113 23 SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKRD 100 (493)
Q Consensus 23 ~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~l-~~ll~~~~~~~~~IVF~~t~~~ 100 (493)
+-.||.|...+..++.+-|--+- +.+. .+++.....+ -.+......|..++ ..+...+..+.++||||+|++.
T Consensus 382 LsGMTGTa~te~~Ef~~iY~l~V--v~IP---tnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~ 456 (896)
T PRK13104 382 LSGMTGTADTEAYEFQQIYNLEV--VVIP---TNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEA 456 (896)
T ss_pred hccCCCCChhHHHHHHHHhCCCE--EECC---CCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 44578888777666666553322 2222 1221111111 12223344565544 4455556778999999999999
Q ss_pred HHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCC------------------------
Q 011113 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN------------------------ 155 (493)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~------------------------ 155 (493)
++.|+..|.+ ++++..||+.+.+.+++.+.++|+.|. |+||||+|+||+||.=
T Consensus 457 sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~ 534 (896)
T PRK13104 457 SEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVK 534 (896)
T ss_pred HHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHH
Confidence 9999999986 899999999999999999999999995 9999999999999951
Q ss_pred ---------c-----cEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhh
Q 011113 156 ---------V-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (493)
Q Consensus 156 ---------v-----~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (493)
| =|||-...+.|..-=-|-.||+||.|.+|.+-.|++-.|
T Consensus 535 ~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 535 KEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred HHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 1 168888888888888999999999999999999887654
No 107
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.40 E-value=2.2e-11 Score=123.43 Aligned_cols=212 Identities=17% Similarity=0.215 Sum_probs=147.5
Q ss_pred CCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcc------cHHHH---HHH-HHHHHcCC
Q 011113 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT------SKRTI---LSD-LITVYAKG 88 (493)
Q Consensus 19 ~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~------~k~~~---l~~-ll~~~~~~ 88 (493)
.+.|++-.|||+...++-....+--+. ++++... -.+..-+++.++.++. .|... ... +.+....+
T Consensus 450 ~~~~~~~~~~~~K~~~~~~~~~~~~~E--~~Li~~D--GSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~ 525 (1034)
T KOG4150|consen 450 INMGVYDGDTPYKDRTRLRSELANLSE--LELVTID--GSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHG 525 (1034)
T ss_pred cCcceEeCCCCcCCHHHHHHHhcCCcc--eEEEEec--CCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcC
Confidence 578999999999777665443332222 3332211 1233445565554431 12111 122 22333456
Q ss_pred CeEEEEeCChHHHHHHHHHHHccC---------ceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEE
Q 011113 89 GKTIVFTQTKRDADEVSLALTSII---------ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~~~---------~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~V 159 (493)
-++|-||++++.|+.+....++.+ .+..+.|+...++|.++...+-.|+..-+|||++++.||||..++.|
T Consensus 526 ~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAV 605 (1034)
T KOG4150|consen 526 LRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAV 605 (1034)
T ss_pred CcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeE
Confidence 799999999999998776655421 35568899999999999999999999999999999999999999999
Q ss_pred EeCCCCCChhHHHHHhhccCCCCCcceEEEe--cChhhHHHHHHHHHHhCCCceeeCCCCHH-HHHHHHHHHHHHHhc
Q 011113 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILM--FTSSQRRTVRSLERDVGCKFEFVSPPVVE-DVLESSAEQVVATLN 234 (493)
Q Consensus 160 I~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l--~~~~e~~~~~~l~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~l~ 234 (493)
++.++|.+...+.|..||+||..++..++++ ..|-+..++..-+..+...-.+..+...+ -++..+++-..-.|.
T Consensus 606 l~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~N~~iL~~HlQCAA~ELP 683 (1034)
T KOG4150|consen 606 LHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQNKHVLMQHLQCAALELP 683 (1034)
T ss_pred EEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEecccHHHHHHHHhHHhhcCc
Confidence 9999999999999999999999888766555 45778788877777776655554444443 344455444444443
No 108
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=8.6e-12 Score=135.57 Aligned_cols=167 Identities=20% Similarity=0.223 Sum_probs=125.0
Q ss_pred EEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEE-EEEcCcccHHH-HHHHHHHHHcCCCeEEEEeCChHH
Q 011113 23 SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY-AISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRD 100 (493)
Q Consensus 23 ~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~-~~~~~~~~k~~-~l~~ll~~~~~~~~~IVF~~t~~~ 100 (493)
+-.||.|...+..++.+-|--+- |.+. .+++.....+- .+......|.. ++..+...+..+.++||||+|++.
T Consensus 387 L~GMTGTa~te~~Ef~~iY~l~V--v~IP---Tnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~ 461 (908)
T PRK13107 387 LAGMTGTADTEAFEFQHIYGLDT--VVVP---TNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQ 461 (908)
T ss_pred hhcccCCChHHHHHHHHHhCCCE--EECC---CCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHH
Confidence 44578888777666666553332 2221 12221111111 12223344544 445555566778899999999999
Q ss_pred HHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCC------------------------
Q 011113 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN------------------------ 155 (493)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~------------------------ 155 (493)
++.++..|.. ++++..||+.+++.+++.+.++|+.|. |+||||+|+||+||.=
T Consensus 462 se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~ 539 (908)
T PRK13107 462 SELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKA 539 (908)
T ss_pred HHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHH
Confidence 9999999986 899999999999999999999999998 9999999999999951
Q ss_pred --------c-----cEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhH
Q 011113 156 --------V-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (493)
Q Consensus 156 --------v-----~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~ 196 (493)
| =|||-...+.|..-=-|-.||+||.|.+|.+..|++-.|.
T Consensus 540 ~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 540 DWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 1 2788888899988889999999999999999999876553
No 109
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.37 E-value=2.5e-11 Score=131.01 Aligned_cols=180 Identities=19% Similarity=0.333 Sum_probs=121.3
Q ss_pred CCCCcEEEEeccCChHHHHHHHHhcC-CCc-eEEeccccccccccceEEEEEEcCcc---cHHH-----HHHHHHHHHcC
Q 011113 18 PPKRQSMLFSATMPSWVKKLSRKYLD-NPL-NIDLVGNQDEKLAEGIKLYAISTTAT---SKRT-----ILSDLITVYAK 87 (493)
Q Consensus 18 ~~~~q~ll~SAT~p~~v~~l~~~~l~-~~~-~i~~~~~~~~~~~~~i~~~~~~~~~~---~k~~-----~l~~ll~~~~~ 87 (493)
....++|.+|||+|+- .+++. ||+ +|. -+-....... +..+.+.++-.+.. .+.. ....+++.+..
T Consensus 273 qs~IRivgLSATlPN~-eDvA~-fL~vn~~~glfsFd~~yR--PvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~ 348 (1230)
T KOG0952|consen 273 QSMIRIVGLSATLPNY-EDVAR-FLRVNPYAGLFSFDQRYR--PVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQE 348 (1230)
T ss_pred hhheEEEEeeccCCCH-HHHHH-HhcCCCccceeeeccccc--ccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHc
Confidence 3567899999999974 44553 555 322 1211111111 12223333322221 1111 22345556667
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc------------------------CceEEEeCCCCHHHHHHHHhcccCCCEEEEEe
Q 011113 88 GGKTIVFTQTKRDADEVSLALTSI------------------------IASEALHGDISQHQRERTLNGFRQGKFTVLVA 143 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~------------------------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVa 143 (493)
+.+++|||.++..+...|+.|.+. .....+|++|..++|..+.+.|+.|-++||+|
T Consensus 349 g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~c 428 (1230)
T KOG0952|consen 349 GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCC 428 (1230)
T ss_pred CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEe
Confidence 899999999999999988888531 12456899999999999999999999999999
Q ss_pred cccccccCCCCCccEEE----eCCCCC------ChhHHHHHhhccCCCC--CcceEEEecChhhHHHHHH
Q 011113 144 TDVAARGLDIPNVDLII----HYELPN------DPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTVRS 201 (493)
Q Consensus 144 T~~~~~Gidip~v~~VI----~~~~p~------~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e~~~~~~ 201 (493)
|..++.|+++|+--++| -||.-. ..-+.+|..|||||.. ..|.++++.+......+..
T Consensus 429 TaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~s 498 (1230)
T KOG0952|consen 429 TATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYES 498 (1230)
T ss_pred cceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHH
Confidence 99999999999755555 133222 4567799999999965 6799998877655444433
No 110
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.37 E-value=1.4e-11 Score=134.59 Aligned_cols=179 Identities=21% Similarity=0.333 Sum_probs=124.1
Q ss_pred CCCcEEEEeccCChHHHHHHHHhcC-CCceEEeccccccccccceEEEEEEcCccc---HHHH-----HHHHHHHHcCCC
Q 011113 19 PKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATS---KRTI-----LSDLITVYAKGG 89 (493)
Q Consensus 19 ~~~q~ll~SAT~p~~v~~l~~~~l~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~---k~~~-----l~~ll~~~~~~~ 89 (493)
...+++.+|||+|+-. +.+ .|+. ++.-+-....... +..+.|.++-+.... +.++ ...+++... ..
T Consensus 473 e~~RlVGLSATLPNy~-DV~-~Fl~v~~~glf~fd~syR--pvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~ag-k~ 547 (1674)
T KOG0951|consen 473 EGSRLVGLSATLPNYE-DVA-SFLRVDPEGLFYFDSSYR--PVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAG-KN 547 (1674)
T ss_pred cCceeeeecccCCchh-hhH-HHhccCcccccccCcccC--cCCccceEeccccCCchHHHHHHHHHHHHHHHHhCC-CC
Confidence 4689999999999842 222 2333 3332222211111 233455555544332 2222 233444433 48
Q ss_pred eEEEEeCChHHHHHHHHHHHcc--------------------------------------CceEEEeCCCCHHHHHHHHh
Q 011113 90 KTIVFTQTKRDADEVSLALTSI--------------------------------------IASEALHGDISQHQRERTLN 131 (493)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~~--------------------------------------~~~~~lhg~~~~~~r~~~~~ 131 (493)
++|||+.+|+++.+.|..++.. +....+|.+|+..+|+.+.+
T Consensus 548 qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~Ed 627 (1674)
T KOG0951|consen 548 QVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVED 627 (1674)
T ss_pred cEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHH
Confidence 9999999999888877776511 34678999999999999999
Q ss_pred cccCCCEEEEEecccccccCCCCCccEEE----eCCC------CCChhHHHHHhhccCCCC--CcceEEEecChhhHHHH
Q 011113 132 GFRQGKFTVLVATDVAARGLDIPNVDLII----HYEL------PNDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTV 199 (493)
Q Consensus 132 ~F~~g~~~iLVaT~~~~~Gidip~v~~VI----~~~~------p~~~~~y~qr~GR~gR~g--~~g~~i~l~~~~e~~~~ 199 (493)
.|++|.++|||+|-.+++|+++|.-+++| -|++ +.++.+.+||.||+||.. ..|..+++....+..+.
T Consensus 628 Lf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyy 707 (1674)
T KOG0951|consen 628 LFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYY 707 (1674)
T ss_pred HHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhh
Confidence 99999999999999999999999988888 2554 347899999999999976 55777777766666554
Q ss_pred HHH
Q 011113 200 RSL 202 (493)
Q Consensus 200 ~~l 202 (493)
..+
T Consensus 708 ls~ 710 (1674)
T KOG0951|consen 708 LSL 710 (1674)
T ss_pred HHh
Confidence 443
No 111
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.6e-11 Score=128.85 Aligned_cols=203 Identities=20% Similarity=0.298 Sum_probs=135.9
Q ss_pred CCcEEEEeccCChHHHHHH--HHhcC-CCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHH--cCCCeEEEE
Q 011113 20 KRQSMLFSATMPSWVKKLS--RKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY--AKGGKTIVF 94 (493)
Q Consensus 20 ~~q~ll~SAT~p~~v~~l~--~~~l~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~--~~~~~~IVF 94 (493)
...+|+||||+- |.++. +..+. -|..|.+...+. +..| |+.-..+...-.++....++.+ .+++-+|||
T Consensus 414 pLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQf---PVsI-HF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVF 487 (1172)
T KOG0926|consen 414 PLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQF---PVSI-HFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVF 487 (1172)
T ss_pred ceeEEEEeeeEE--ecccccCceecCCCCceeeeecccC---ceEE-EeccCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Confidence 467899999982 33333 12233 234455443222 2222 2333334433445555555444 357899999
Q ss_pred eCChHHHHHHHHHHHccC--------------------------------------------------------------
Q 011113 95 TQTKRDADEVSLALTSII-------------------------------------------------------------- 112 (493)
Q Consensus 95 ~~t~~~~~~l~~~L~~~~-------------------------------------------------------------- 112 (493)
+....++++|++.|++.+
T Consensus 488 vTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa 567 (1172)
T KOG0926|consen 488 VTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAA 567 (1172)
T ss_pred EeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhh
Confidence 999999999999987421
Q ss_pred --------------------------------------ceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCC
Q 011113 113 --------------------------------------ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (493)
Q Consensus 113 --------------------------------------~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip 154 (493)
.|.+|++-|+.+++.++++....|..-++|||+||+..|.||
T Consensus 568 ~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIP 647 (1172)
T KOG0926|consen 568 FNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIP 647 (1172)
T ss_pred hhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccC
Confidence 255667888999999999999999999999999999999999
Q ss_pred CccEEEeCCCC------------------CChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCC
Q 011113 155 NVDLIIHYELP------------------NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (493)
Q Consensus 155 ~v~~VI~~~~p------------------~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p 216 (493)
.|.+||+.+.- .+.++--||+|||||.| +|+||-||+..=.. ..|+. -
T Consensus 648 gIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSAVf~----------~~Fe~---f 713 (1172)
T KOG0926|consen 648 GIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSAVFS----------NDFEE---F 713 (1172)
T ss_pred CeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhHHhh----------cchhh---h
Confidence 99999965532 14555679999999986 89999999863211 01111 1
Q ss_pred CHHHHHHHHHHHHHHHhcCCCccchh
Q 011113 217 VVEDVLESSAEQVVATLNGVHPESVE 242 (493)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (493)
+..++++.-.+.++..++.++...+.
T Consensus 714 S~PEIlk~Pve~lvLqMKsMnI~kVv 739 (1172)
T KOG0926|consen 714 SLPEILKKPVESLVLQMKSMNIDKVV 739 (1172)
T ss_pred ccHHHhhCcHHHHHHHHHhcCcccee
Confidence 23456666666667777666554433
No 112
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.29 E-value=3.3e-11 Score=135.02 Aligned_cols=136 Identities=18% Similarity=0.360 Sum_probs=111.9
Q ss_pred cccHHHHHHHHHHHH-cCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCC---CEEEEEecc
Q 011113 71 ATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG---KFTVLVATD 145 (493)
Q Consensus 71 ~~~k~~~l~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g---~~~iLVaT~ 145 (493)
...|+.+|..+|..+ ..+.++|||+......+.|..+|.. ++....+||.++..+|+.+++.|.+. .+.+|++|.
T Consensus 469 ~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTr 548 (1033)
T PLN03142 469 NSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTR 548 (1033)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecc
Confidence 346788888887665 3467999999999999999999974 78999999999999999999999753 356899999
Q ss_pred cccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEE--ecCh--hhHHHHHHHHHHh
Q 011113 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL--MFTS--SQRRTVRSLERDV 206 (493)
Q Consensus 146 ~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~--l~~~--~e~~~~~~l~~~~ 206 (493)
+.+.|||+..+++||+||+||++..+.|+++|+.|.|.+..+.+ |++. -|...+....+.+
T Consensus 549 AGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl 613 (1033)
T PLN03142 549 AGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKL 613 (1033)
T ss_pred ccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997655444 4443 3445555544443
No 113
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.24 E-value=4.3e-11 Score=124.97 Aligned_cols=106 Identities=25% Similarity=0.409 Sum_probs=89.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-C---------------------------------------ceEEEeCCCCHHHHH
Q 011113 88 GGKTIVFTQTKRDADEVSLALTSI-I---------------------------------------ASEALHGDISQHQRE 127 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~-~---------------------------------------~~~~lhg~~~~~~r~ 127 (493)
..++|||+-++++|+.+|..+.+. + .+..+|++|-+--++
T Consensus 383 ~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE 462 (1041)
T KOG0948|consen 383 YLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKE 462 (1041)
T ss_pred CCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHH
Confidence 358999999999999999888641 0 356789999999999
Q ss_pred HHHhcccCCCEEEEEecccccccCCCCCccEEEe----CCC----CCChhHHHHHhhccCCCC--CcceEEEecCh
Q 011113 128 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YEL----PNDPETFVHRSGRTGRAG--KEGTAILMFTS 193 (493)
Q Consensus 128 ~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~----~~~----p~~~~~y~qr~GR~gR~g--~~g~~i~l~~~ 193 (493)
.+.--|+.|-+++|.||...+.|+|+|.-++|+- ||- ..+.-.|+||+|||||.| ..|.||++++.
T Consensus 463 ~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 463 VIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred HHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecC
Confidence 9999999999999999999999999999888773 221 126778999999999988 56999999865
No 114
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.23 E-value=5.6e-11 Score=124.17 Aligned_cols=103 Identities=32% Similarity=0.524 Sum_probs=92.5
Q ss_pred HHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCC
Q 011113 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155 (493)
Q Consensus 77 ~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~ 155 (493)
.+..++..+....++||||.++.+++.++..+.. .+ +..+.+..++.+|+.+++.|+.+.+++||++.++..|+|+|+
T Consensus 272 ~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~ 350 (442)
T COG1061 272 AVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPD 350 (442)
T ss_pred HHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCC
Confidence 3334444332457999999999999999999985 45 889999999999999999999999999999999999999999
Q ss_pred ccEEEeCCCCCChhHHHHHhhccCC
Q 011113 156 VDLIIHYELPNDPETFVHRSGRTGR 180 (493)
Q Consensus 156 v~~VI~~~~p~~~~~y~qr~GR~gR 180 (493)
++++|...+..+...|+||+||.-|
T Consensus 351 ~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 351 ADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred CcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 9999999999999999999999999
No 115
>PF08152 GUCT: GUCT (NUC152) domain; InterPro: IPR012562 This is the C-terminal domain found in the RNA helicase II / Gu protein family [].; GO: 0003723 RNA binding, 0004386 helicase activity, 0005524 ATP binding, 0005634 nucleus; PDB: 2E29_A.
Probab=99.21 E-value=2.2e-11 Score=99.01 Aligned_cols=95 Identities=38% Similarity=0.563 Sum_probs=52.0
Q ss_pred CCCCCCCCcccccCCCCeEEEEEeecCccccCCcchhhHHHHhhhhcC-cCcCccccEEEeeccccceeEeecCHHHHHH
Q 011113 269 GFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYP-TAADEIGKIHIIADDRVQGAVFDLPEEIAKE 347 (493)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~ig~i~i~~~~~~~gs~fdvp~~~a~~ 347 (493)
|+++ ++.|||+++.++++|+.+....++ -++..++..|.+..+ ...+.|++|++++|. +|++||||++.+++
T Consensus 1 G~t~-~~~RSLLt~~~g~vTl~l~~~~~i----~~~~y~~~~L~~~L~e~~~~~v~~m~l~~d~--~GavFDvP~~~~~~ 73 (97)
T PF08152_consen 1 GYTE-IKQRSLLTSEEGFVTLQLTCSREI----RSPGYAWRILRRQLSEEIADKVKGMTLLKDK--MGAVFDVPSEIAEE 73 (97)
T ss_dssp S-S--------------EEEEEEE-SS------SSTHHHHHHHHHHS-HHHHTT-EEEEE-TTS--SEEEEEEEHHHHHH
T ss_pred CCCC-CCccccccCCCCCEEEEEEcCCcC----CCchhHHHHHHHhcCHHHHHhhCcEEEecCC--CEEEEEChHHHHHH
Confidence 4556 778999999999999999988643 456777777777654 356789999999986 79999999999999
Q ss_pred HHhhcCCC-CCceeeeccCCCCCC
Q 011113 348 LLNKQIPP-GNTISKITKLPALQD 370 (493)
Q Consensus 348 ~~~~~~~~-~~~i~~~~~lP~~~~ 370 (493)
+++.+.+. ++.++++++||++++
T Consensus 74 ~~~~~~~~~~~~l~v~~~LPeL~e 97 (97)
T PF08152_consen 74 FLAKWEDSRGWQLSVATELPELQE 97 (97)
T ss_dssp HHHH--SS-S-EEE----------
T ss_pred HHHhCcccCCcEEEEcccCcCccC
Confidence 99998885 899999999999864
No 116
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.16 E-value=3.2e-10 Score=129.29 Aligned_cols=92 Identities=23% Similarity=0.441 Sum_probs=81.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-------C---ceEEEeCCCCHHHHHHHHhcccCCCE-EEEEecccccccCCCCCc
Q 011113 88 GGKTIVFTQTKRDADEVSLALTSI-------I---ASEALHGDISQHQRERTLNGFRQGKF-TVLVATDVAARGLDIPNV 156 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~-------~---~~~~lhg~~~~~~r~~~~~~F~~g~~-~iLVaT~~~~~Gidip~v 156 (493)
+.++||||.++++|+.+++.|.+. + .+..+|++++ ++..++++|+++.. +|||+++++.+|+|+|.|
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccc
Confidence 379999999999999998887642 1 3567899975 46789999999886 699999999999999999
Q ss_pred cEEEeCCCCCChhHHHHHhhccCCC
Q 011113 157 DLIIHYELPNDPETFVHRSGRTGRA 181 (493)
Q Consensus 157 ~~VI~~~~p~~~~~y~qr~GR~gR~ 181 (493)
++||.+.++.|...|+||+||+.|.
T Consensus 776 ~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 776 CNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred cEEEEecCCCCHHHHHHHHhhhccC
Confidence 9999999999999999999999995
No 117
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.04 E-value=5.3e-09 Score=115.78 Aligned_cols=104 Identities=25% Similarity=0.412 Sum_probs=86.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHc----------c-------------------C-------------ceEEEeCCCCHHHH
Q 011113 89 GKTIVFTQTKRDADEVSLALTS----------I-------------------I-------------ASEALHGDISQHQR 126 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~----------~-------------------~-------------~~~~lhg~~~~~~r 126 (493)
-++|+|+-++..|+..+..+.. . + .+.++|++|-+..+
T Consensus 380 lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K 459 (1041)
T COG4581 380 LPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIK 459 (1041)
T ss_pred CceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHH
Confidence 4899999999999988776641 0 1 13467999999999
Q ss_pred HHHHhcccCCCEEEEEecccccccCCCCCccEEEe----C----CCCCChhHHHHHhhccCCCC--CcceEEEecC
Q 011113 127 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----Y----ELPNDPETFVHRSGRTGRAG--KEGTAILMFT 192 (493)
Q Consensus 127 ~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~----~----~~p~~~~~y~qr~GR~gR~g--~~g~~i~l~~ 192 (493)
..+.+.|..|-++||+||.+++.|||+|.-++|+- + .-+.++..|+|+.||+||.| ..|.+|++-.
T Consensus 460 ~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 460 ELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred HHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 99999999999999999999999999999888771 2 23458999999999999988 5688888743
No 118
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.91 E-value=4.5e-08 Score=106.20 Aligned_cols=167 Identities=17% Similarity=0.158 Sum_probs=114.0
Q ss_pred cEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEE-EEEcCcccHHHHH-HHHHHHHcCCCeEEEEeCChH
Q 011113 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY-AISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKR 99 (493)
Q Consensus 22 q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~-~~~~~~~~k~~~l-~~ll~~~~~~~~~IVF~~t~~ 99 (493)
.+-.||.|...+..++.+-|--+- +.+. .+++.....+- .+......|..++ ..+...+.++.++||.|.|.+
T Consensus 363 kLsGMTGTA~te~~Ef~~iY~l~V--v~IP---TnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe 437 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFIDIYNMRV--NVVP---TNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVE 437 (925)
T ss_pred hhhccCCCCHHHHHHHHHHhCCCE--EECC---CCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 345578887766666665553222 2221 12211111110 1222334555444 445556677889999999999
Q ss_pred HHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCcc--------EEEeCCCCCChhH
Q 011113 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD--------LIIHYELPNDPET 170 (493)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~--------~VI~~~~p~~~~~ 170 (493)
..+.|+..|.+ +++..+|+..-...+-+.+-++=+ .-.|.|||+.|.||.||.--. |||....|.+..-
T Consensus 438 ~SE~ls~~L~~~gi~h~vLNAk~~e~EA~IIa~AG~--~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRI 515 (925)
T PRK12903 438 DSETLHELLLEANIPHTVLNAKQNAREAEIIAKAGQ--KGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRI 515 (925)
T ss_pred HHHHHHHHHHHCCCCceeecccchhhHHHHHHhCCC--CCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHH
Confidence 99999999986 899999988744333333333222 346999999999999995322 8999999999988
Q ss_pred HHHHhhccCCCCCcceEEEecChhh
Q 011113 171 FVHRSGRTGRAGKEGTAILMFTSSQ 195 (493)
Q Consensus 171 y~qr~GR~gR~g~~g~~i~l~~~~e 195 (493)
--|-.||+||.|.+|.+-.|++-.|
T Consensus 516 DnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 516 DNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred HHHHhcccccCCCCCcceEEEecch
Confidence 8999999999999999988887554
No 119
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.86 E-value=6.2e-08 Score=103.67 Aligned_cols=168 Identities=18% Similarity=0.187 Sum_probs=117.2
Q ss_pred cEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHH-HHHHHHHHcCCCeEEEEeCChHH
Q 011113 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTI-LSDLITVYAKGGKTIVFTQTKRD 100 (493)
Q Consensus 22 q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~-l~~ll~~~~~~~~~IVF~~t~~~ 100 (493)
.+-.||.|...+..++.+-|--+ ++.+.. ..+......... +......|..+ +..+.+.+..+.++||.|.+.+.
T Consensus 364 kLsGMTGTa~t~~~Ef~~iY~l~--Vv~IPt-nkp~~R~d~~d~-iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~ 439 (764)
T PRK12326 364 TVCGMTGTAVAAGEQLRQFYDLG--VSVIPP-NKPNIREDEADR-VYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAE 439 (764)
T ss_pred hheeecCCChhHHHHHHHHhCCc--EEECCC-CCCceeecCCCc-eEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHH
Confidence 45678999877777766655433 222221 111111111111 22233345544 45555666788999999999999
Q ss_pred HHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCC----------c-----cEEEeCCC
Q 011113 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----------V-----DLIIHYEL 164 (493)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~----------v-----~~VI~~~~ 164 (493)
.+.|+..|.+ ++++.+|+..-...+-+.+-++=+.| .|.|||+.|.||.||.= | =|||-...
T Consensus 440 SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTer 517 (764)
T PRK12326 440 SEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGKYG--AVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGR 517 (764)
T ss_pred HHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCCCC--cEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccC
Confidence 9999999986 79999998875444444444443433 58999999999999952 2 27999999
Q ss_pred CCChhHHHHHhhccCCCCCcceEEEecChhh
Q 011113 165 PNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (493)
Q Consensus 165 p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (493)
|.+...-.|-.||+||.|.+|.+..|++-.|
T Consensus 518 heSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 518 HRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred CchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 9999999999999999999999999987655
No 120
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.82 E-value=8e-08 Score=104.16 Aligned_cols=183 Identities=18% Similarity=0.306 Sum_probs=118.7
Q ss_pred CCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccH-----HHHHHHHHHHHcCCCeEE
Q 011113 18 PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK-----RTILSDLITVYAKGGKTI 92 (493)
Q Consensus 18 ~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k-----~~~l~~ll~~~~~~~~~I 92 (493)
..+.++||-|||..-+-...++. .....+.+...........+....+....... ..++..+-+.+..+.++|
T Consensus 347 ~~~~pvvLgSATPSLES~~~~~~--g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~l 424 (730)
T COG1198 347 KENAPVVLGSATPSLESYANAES--GKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVL 424 (730)
T ss_pred HhCCCEEEecCCCCHHHHHhhhc--CceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEE
Confidence 35899999999986553333311 11233444433232223333333332222222 445566666667788999
Q ss_pred EEeCChH------------------------------------------------------------HHHHHHHHHHcc-
Q 011113 93 VFTQTKR------------------------------------------------------------DADEVSLALTSI- 111 (493)
Q Consensus 93 VF~~t~~------------------------------------------------------------~~~~l~~~L~~~- 111 (493)
+|.|.+- -++.+.+.|.+.
T Consensus 425 lflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~F 504 (730)
T COG1198 425 LFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLF 504 (730)
T ss_pred EEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHC
Confidence 9988665 345566666643
Q ss_pred --CceEEEeCCCCHH--HHHHHHhcccCCCEEEEEecccccccCCCCCccEEEe--CCC----CC------ChhHHHHHh
Q 011113 112 --IASEALHGDISQH--QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH--YEL----PN------DPETFVHRS 175 (493)
Q Consensus 112 --~~~~~lhg~~~~~--~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~--~~~----p~------~~~~y~qr~ 175 (493)
.++..+-++.+.. .-+..++.|.+|+.+|||.|.+++.|.|+|++++|.. .|. |. ....+.|-+
T Consensus 505 P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~Qva 584 (730)
T COG1198 505 PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVA 584 (730)
T ss_pred CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHH
Confidence 4567777776543 4578899999999999999999999999999998663 332 21 234468999
Q ss_pred hccCCCCCcceEEEecChhhHHHHHHH
Q 011113 176 GRTGRAGKEGTAILMFTSSQRRTVRSL 202 (493)
Q Consensus 176 GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (493)
||+||.+++|.+++-....+...++.+
T Consensus 585 GRAgR~~~~G~VvIQT~~P~hp~i~~~ 611 (730)
T COG1198 585 GRAGRAGKPGEVVIQTYNPDHPAIQAL 611 (730)
T ss_pred hhhccCCCCCeEEEEeCCCCcHHHHHH
Confidence 999999999998887665554444444
No 121
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.76 E-value=3.2e-08 Score=100.99 Aligned_cols=128 Identities=23% Similarity=0.331 Sum_probs=92.9
Q ss_pred HHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc--cCceEEEeCCCCHHHHHHHHhcccC--CCEEEEEecccccccCC
Q 011113 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLD 152 (493)
Q Consensus 77 ~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~r~~~~~~F~~--g~~~iLVaT~~~~~Gid 152 (493)
.+..-++.+.+ +-+|| |-+++.+..+...+.+ ...+.+++|.||++.|...-..|.+ ++++||||||++.+|+|
T Consensus 347 ~~~~sl~nlk~-GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLN 424 (700)
T KOG0953|consen 347 TALGSLSNLKP-GDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLN 424 (700)
T ss_pred hhhhhhccCCC-CCeEE-EeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccc
Confidence 33344444433 45544 3356778888888875 3459999999999999999999987 89999999999999999
Q ss_pred CCCccEEEeCCC---------CCChhHHHHHhhccCCCC---CcceEEEecChhhHHHHHHHHHHhCCCce
Q 011113 153 IPNVDLIIHYEL---------PNDPETFVHRSGRTGRAG---KEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (493)
Q Consensus 153 ip~v~~VI~~~~---------p~~~~~y~qr~GR~gR~g---~~g~~i~l~~~~e~~~~~~l~~~~~~~~~ 211 (493)
+ +|+-||.|++ |.+..+..|-+|||||.+ ..|.+.+|..+ .+..|.+.+..+++
T Consensus 425 L-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~e----DL~~L~~~l~~p~e 490 (700)
T KOG0953|consen 425 L-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSE----DLKLLKRILKRPVE 490 (700)
T ss_pred c-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHh----hHHHHHHHHhCCch
Confidence 9 7888887664 346788899999999976 34666665443 34444444444433
No 122
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=98.72 E-value=5.6e-09 Score=57.02 Aligned_cols=17 Identities=59% Similarity=1.499 Sum_probs=16.0
Q ss_pred ccccCCCCCcccCCCCC
Q 011113 477 ACFNCGKSGHRASECPN 493 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~~ 493 (493)
.||+|++.||+|+|||+
T Consensus 2 ~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 2 KCFNCGEPGHIARDCPK 18 (18)
T ss_dssp BCTTTSCSSSCGCTSSS
T ss_pred cCcCCCCcCcccccCcc
Confidence 49999999999999996
No 123
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.69 E-value=1.9e-07 Score=102.52 Aligned_cols=167 Identities=19% Similarity=0.177 Sum_probs=116.1
Q ss_pred cEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEE-EEEEcCcccHHH-HHHHHHHHHcCCCeEEEEeCChH
Q 011113 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKR 99 (493)
Q Consensus 22 q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~-~l~~ll~~~~~~~~~IVF~~t~~ 99 (493)
++..||.|.-.+..++.+-|--+ ++.+. .+++.....+ ..+......|.. ++..+.+.+..+.++||-|.+.+
T Consensus 505 kl~GmTGTa~~e~~Ef~~iY~l~--v~~iP---t~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~ 579 (970)
T PRK12899 505 KLAGMTGTAITESREFKEIYNLY--VLQVP---TFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGNPILIGTESVE 579 (970)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC--EEECC---CCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHH
Confidence 55668889876666665555322 22222 1111111111 112233335544 44556666777889999999999
Q ss_pred HHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCC---Ccc-----EEEeCCCCCChhH
Q 011113 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NVD-----LIIHYELPNDPET 170 (493)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip---~v~-----~VI~~~~p~~~~~ 170 (493)
..+.|+..|.+ +++..+|+..-...+-+.+-++=+. -.|.|||+.|.||.||. .|. |||....|.+...
T Consensus 580 ~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~AG~~--g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Ri 657 (970)
T PRK12899 580 VSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAGAGKL--GAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRI 657 (970)
T ss_pred HHHHHHHHHHHcCCcceecccchhhhHHHHHHhcCCC--CcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHH
Confidence 99999999985 8888888887444444444444333 45999999999999994 222 7999999999999
Q ss_pred HHHHhhccCCCCCcceEEEecChhh
Q 011113 171 FVHRSGRTGRAGKEGTAILMFTSSQ 195 (493)
Q Consensus 171 y~qr~GR~gR~g~~g~~i~l~~~~e 195 (493)
-.|-.||+||.|.+|.+..|++-.|
T Consensus 658 d~Ql~GRagRQGdpGss~f~lSlED 682 (970)
T PRK12899 658 DRQLRGRCARLGDPGAAKFFLSFED 682 (970)
T ss_pred HHHHhcccccCCCCCceeEEEEcch
Confidence 9999999999999999999987655
No 124
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.68 E-value=9.9e-07 Score=96.24 Aligned_cols=130 Identities=24% Similarity=0.330 Sum_probs=91.7
Q ss_pred CCCcEEEEeccCCh-H-HHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeC
Q 011113 19 PKRQSMLFSATMPS-W-VKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQ 96 (493)
Q Consensus 19 ~~~q~ll~SAT~p~-~-v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~ 96 (493)
+.-+++..|||..+ . -..+.+..|...+ - .......+|...|+.. ...+.+..+++.+. .-.|||++
T Consensus 275 k~g~LvvsSATg~~rg~R~~LfReLlgFev----G--~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG--~GgLIfV~ 343 (1187)
T COG1110 275 KLGILVVSSATGKPRGSRLKLFRELLGFEV----G--SGGEGLRNIVDIYVES---ESLEKVVELVKKLG--DGGLIFVP 343 (1187)
T ss_pred CCceEEEeeccCCCCCchHHHHHHHhCCcc----C--ccchhhhheeeeeccC---ccHHHHHHHHHHhC--CCeEEEEE
Confidence 45789999999843 2 2335555554211 1 1222345566666555 33444456676663 46799999
Q ss_pred C---hHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEec----ccccccCCCCC-ccEEEeCCC
Q 011113 97 T---KRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT----DVAARGLDIPN-VDLIIHYEL 164 (493)
Q Consensus 97 t---~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT----~~~~~Gidip~-v~~VI~~~~ 164 (493)
. ++.+++|+++|++ ++.+..+|+. .++.++.|..|++++||.. .++.||||+|. +.++|.|+.
T Consensus 344 ~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~Gv 415 (1187)
T COG1110 344 IDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGV 415 (1187)
T ss_pred cHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecC
Confidence 9 9999999999996 7999999984 3788999999999999875 48999999995 456664443
No 125
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.67 E-value=5.1e-07 Score=102.16 Aligned_cols=119 Identities=20% Similarity=0.274 Sum_probs=81.0
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHcc---CceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccE--EEe
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL--IIH 161 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~---~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~--VI~ 161 (493)
.++++|||+++.+..+.++..|... .....+..+.. ..|.+++++|++++..||++|+.+++|||+|+..+ ||.
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 4579999999999999999998741 12223333333 57899999999999999999999999999998774 555
Q ss_pred CCCCC----C--------------------------hhHHHHHhhccCCCCCcceEEEecChh--hHHHHHHHHHHh
Q 011113 162 YELPN----D--------------------------PETFVHRSGRTGRAGKEGTAILMFTSS--QRRTVRSLERDV 206 (493)
Q Consensus 162 ~~~p~----~--------------------------~~~y~qr~GR~gR~g~~g~~i~l~~~~--e~~~~~~l~~~~ 206 (493)
..+|. + ...+.|.+||.=|....--+++++++. ...+-+.+.+.+
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sL 828 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSL 828 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhC
Confidence 55553 1 122368888888876443344444432 223334444443
No 126
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.65 E-value=4e-07 Score=99.86 Aligned_cols=168 Identities=21% Similarity=0.215 Sum_probs=115.4
Q ss_pred cEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHH-HHHHHHHHcCCCeEEEEeCChHH
Q 011113 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTI-LSDLITVYAKGGKTIVFTQTKRD 100 (493)
Q Consensus 22 q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~-l~~ll~~~~~~~~~IVF~~t~~~ 100 (493)
.+-.||.|...+..++.+-|--+-+.| .. ..+.......-. +......|..+ +..+...+..+.++||-|.|.+.
T Consensus 386 kLsGMTGTa~te~~Ef~~iY~l~Vv~I--PT-nkP~~R~D~~d~-vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~ 461 (913)
T PRK13103 386 KLSGMTGTADTEAFEFRQIYGLDVVVI--PP-NKPLARKDFNDL-VYLTAEEKYAAIITDIKECMALGRPVLVGTATIET 461 (913)
T ss_pred hhccCCCCCHHHHHHHHHHhCCCEEEC--CC-CCCcccccCCCe-EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHH
Confidence 345578888777666666553332222 21 111111111112 22333455544 45555666778999999999999
Q ss_pred HHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCC-------------------------
Q 011113 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP------------------------- 154 (493)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip------------------------- 154 (493)
.+.|+..|.+ +++..+|+......+-+.+-++=+.| .|.|||+.|.||.||.
T Consensus 462 SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~~G--aVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~ 539 (913)
T PRK13103 462 SEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGRPG--ALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKA 539 (913)
T ss_pred HHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCCCC--cEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHH
Confidence 9999999985 78887887775544545454444443 5899999999999994
Q ss_pred -------Cc-----cEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhh
Q 011113 155 -------NV-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (493)
Q Consensus 155 -------~v-----~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (493)
.| =|||-...|.|..-=.|-.||+||.|.+|.+-.|++-.|
T Consensus 540 ~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 540 DWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 12 278888899999999999999999999999999987644
No 127
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.65 E-value=5.9e-07 Score=99.07 Aligned_cols=165 Identities=20% Similarity=0.221 Sum_probs=116.6
Q ss_pred EEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEE-EEEEcCcccHHH-HHHHHHHHHcCCCeEEEEeCChHHH
Q 011113 24 MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRDA 101 (493)
Q Consensus 24 ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~-~l~~ll~~~~~~~~~IVF~~t~~~~ 101 (493)
-.||.|...+..++.+-|--+- |.+. .+++.....+ -.+......|.. ++.++...+..+.++||-|.|.+..
T Consensus 567 sGMTGTA~tea~Ef~~IY~L~V--v~IP---TnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~S 641 (1112)
T PRK12901 567 AGMTGTAETEAGEFWDIYKLDV--VVIP---TNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEIS 641 (1112)
T ss_pred cccCCCCHHHHHHHHHHhCCCE--EECC---CCCCcceecCCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHH
Confidence 3578888777666665553332 2222 1111111111 112223334544 4555666677889999999999999
Q ss_pred HHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCC---Cc-----cEEEeCCCCCChhHHH
Q 011113 102 DEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NV-----DLIIHYELPNDPETFV 172 (493)
Q Consensus 102 ~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip---~v-----~~VI~~~~p~~~~~y~ 172 (493)
+.|+..|.. +++..+|+......+-+.+-++=+.| .|-|||+.|.||.||. .| =|||-...+.|..---
T Consensus 642 E~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~ 719 (1112)
T PRK12901 642 ELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDR 719 (1112)
T ss_pred HHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHH
Confidence 999999985 78888888876555655555555544 4899999999999995 22 3799999999999999
Q ss_pred HHhhccCCCCCcceEEEecChhh
Q 011113 173 HRSGRTGRAGKEGTAILMFTSSQ 195 (493)
Q Consensus 173 qr~GR~gR~g~~g~~i~l~~~~e 195 (493)
|-.||+||.|.+|.+-.|++-.|
T Consensus 720 QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 720 QLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred HHhcccccCCCCCcceEEEEccc
Confidence 99999999999999988887544
No 128
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.59 E-value=2.6e-07 Score=101.97 Aligned_cols=128 Identities=19% Similarity=0.366 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHH-ccCceEEEeCCCCHHHHHHHHhcccC---CCEEEEEeccccc
Q 011113 74 KRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQ---GKFTVLVATDVAA 148 (493)
Q Consensus 74 k~~~l~~ll~~~~-~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~~~~~F~~---g~~~iLVaT~~~~ 148 (493)
|+.+|..||..+. .+.+||||..-....+.|+++|. ++|+..-|-|.+..+.|+.+++.|.. ..+-.|+||-+-.
T Consensus 684 KlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGG 763 (1373)
T KOG0384|consen 684 KLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGG 763 (1373)
T ss_pred cEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCc
Confidence 3444555555543 35799999999999999999998 58999999999999999999999975 4688999999999
Q ss_pred ccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcce--EEEecChh--hHHHHHH
Q 011113 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGT--AILMFTSS--QRRTVRS 201 (493)
Q Consensus 149 ~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~--~i~l~~~~--e~~~~~~ 201 (493)
.|||+...+.||.||--|+|..=+|.-.||.|.|++-. +|-|++.. |..++++
T Consensus 764 LGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilER 820 (1373)
T KOG0384|consen 764 LGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILER 820 (1373)
T ss_pred ccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHH
Confidence 99999999999999999999999999999999996654 56667653 3444444
No 129
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=98.58 E-value=6.8e-08 Score=74.82 Aligned_cols=61 Identities=21% Similarity=0.401 Sum_probs=48.9
Q ss_pred EEEEEeecCccccCCcchhhHHHHhhhhcCcCcCccccEEEeeccccceeEeecCHHHHHHHHhhcCC
Q 011113 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (493)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~~~~gs~fdvp~~~a~~~~~~~~~ 354 (493)
+|++++.|+ +++++|++|+++|++..++..++||+|+|.++| +||+||++.++++++....
T Consensus 1 vrl~in~Gr---~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~----S~vev~~~~a~~v~~~l~~ 61 (74)
T PF03880_consen 1 VRLFINVGR---KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDNF----SFVEVPEEVAEKVLEALNG 61 (74)
T ss_dssp -EEEES-SG---GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT-HHHHHHHHTT
T ss_pred CEEEEEccc---ccCCCHHHHHHHHHhccCCCHHhEEEEEEeeeE----EEEEECHHHHHHHHHHhcC
Confidence 589999998 899999999999999999999999999999998 7999999999999998654
No 130
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.56 E-value=5.7e-07 Score=95.11 Aligned_cols=138 Identities=21% Similarity=0.350 Sum_probs=113.4
Q ss_pred CcccHHHHHHHHHHHH-cCCCeEEEEeCChHHHHHHHHHHH-ccCceEEEeCCCCHHHHHHHHhcccCC---CEEEEEec
Q 011113 70 TATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQG---KFTVLVAT 144 (493)
Q Consensus 70 ~~~~k~~~l~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~~~~~F~~g---~~~iLVaT 144 (493)
...-|+.+|..||..+ ..+.+||||..-....+.|..+.. +.|..+-+.|.++.++|...++.|... .+-.|++|
T Consensus 468 ~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLST 547 (971)
T KOG0385|consen 468 TNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLST 547 (971)
T ss_pred hcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEec
Confidence 3456788888888655 457899999999999999988887 588899999999999999999999864 46689999
Q ss_pred ccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcce--EEEecChh--hHHHHHHHHHHhC
Q 011113 145 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGT--AILMFTSS--QRRTVRSLERDVG 207 (493)
Q Consensus 145 ~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~--~i~l~~~~--e~~~~~~l~~~~~ 207 (493)
-+...|||+...++||.||-.|++..=+|..-||.|.|++-. +|-|++.. |...+++-+..+.
T Consensus 548 RAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~ 614 (971)
T KOG0385|consen 548 RAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLR 614 (971)
T ss_pred cccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999996654 44456553 3445555554443
No 131
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.55 E-value=5.7e-06 Score=85.01 Aligned_cols=181 Identities=17% Similarity=0.219 Sum_probs=133.5
Q ss_pred CcEEEEeccCChHHHHHHHHhcCCCc-eEEeccccc-----cccccceEEEEEEcCccc-------HH-----HHHHHHH
Q 011113 21 RQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQD-----EKLAEGIKLYAISTTATS-------KR-----TILSDLI 82 (493)
Q Consensus 21 ~q~ll~SAT~p~~v~~l~~~~l~~~~-~i~~~~~~~-----~~~~~~i~~~~~~~~~~~-------k~-----~~l~~ll 82 (493)
+|||+||+...+++..+..+++.|.. .|.+..... ......++|.+...+..+ +. .+|..+.
T Consensus 216 RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~ 295 (442)
T PF06862_consen 216 RQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLK 295 (442)
T ss_pred eEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhh
Confidence 79999999999999999998776542 343332222 234456667666544322 11 1233333
Q ss_pred HHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc--cccCCCCCccEE
Q 011113 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA--ARGLDIPNVDLI 159 (493)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~--~~Gidip~v~~V 159 (493)
+ -.....+|||+++--+--.|..+|.+ .+....+|--.++.+-.++-..|.+|+.+||+-|.=+ =+=..|..|.+|
T Consensus 296 ~-~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~v 374 (442)
T PF06862_consen 296 R-DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHV 374 (442)
T ss_pred h-ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEE
Confidence 2 12457899999999999999999985 7888899999999999999999999999999999732 234667889999
Q ss_pred EeCCCCCChhHHHHHhhccCCCC------CcceEEEecChhhHHHHHHH
Q 011113 160 IHYELPNDPETFVHRSGRTGRAG------KEGTAILMFTSSQRRTVRSL 202 (493)
Q Consensus 160 I~~~~p~~~~~y~qr~GR~gR~g------~~g~~i~l~~~~e~~~~~~l 202 (493)
|-|.+|..+.-|-..+.-..... ....|.++++..|.-.|++|
T Consensus 375 iFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 375 IFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred EEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 99999999999877775444332 35789999999887666555
No 132
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.42 E-value=3.4e-06 Score=89.81 Aligned_cols=122 Identities=19% Similarity=0.374 Sum_probs=105.7
Q ss_pred ccHHHHHHHHHHHH-cCCCeEEEEeCChHHHHHHHHHHH--ccCceEEEeCCCCHHHHHHHHhcccCCC-E-EEEEeccc
Q 011113 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFRQGK-F-TVLVATDV 146 (493)
Q Consensus 72 ~~k~~~l~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~--~~~~~~~lhg~~~~~~r~~~~~~F~~g~-~-~iLVaT~~ 146 (493)
.-|+.++..+++.. ..+.++|+|..|+...+.|...|. ++|....+.|..+...|..++++|.++. + -.|++|.|
T Consensus 529 sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrv 608 (923)
T KOG0387|consen 529 SGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRV 608 (923)
T ss_pred cchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecc
Confidence 45888888888665 456799999999999999999998 4899999999999999999999999764 3 36889999
Q ss_pred ccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEE--ecCh
Q 011113 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL--MFTS 193 (493)
Q Consensus 147 ~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~--l~~~ 193 (493)
-..|+|+...+-||.||+-|+|.+=.|..-|+-|.|++-.+++ |++.
T Consensus 609 GGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~ 657 (923)
T KOG0387|consen 609 GGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTA 657 (923)
T ss_pred cccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecC
Confidence 9999999999999999999999999999999999996654444 4543
No 133
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.40 E-value=1.2e-05 Score=88.01 Aligned_cols=125 Identities=18% Similarity=0.157 Sum_probs=80.0
Q ss_pred cEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEE-EEEEcCcccHHH-HHHHHHHHHcCCCeEEEEeCChH
Q 011113 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKR 99 (493)
Q Consensus 22 q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~-~l~~ll~~~~~~~~~IVF~~t~~ 99 (493)
.+..||.|...+..++.+.|--+ ++.+. .+++.....+ -.+......|.. ++..+...+..+.++||-|.|.+
T Consensus 361 kL~GMTGTa~te~~Ef~~iY~l~--vv~IP---tnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe 435 (870)
T CHL00122 361 KLSGMTGTAKTEELEFEKIYNLE--VVCIP---THRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIE 435 (870)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC--EEECC---CCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHH
Confidence 45568888876666665555322 22222 2222222221 122233334544 45566677778899999999999
Q ss_pred HHHHHHHHHHc-cCceEEEeCCC--CHHHHHHHHhcccCCCEEEEEecccccccCCC
Q 011113 100 DADEVSLALTS-IIASEALHGDI--SQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (493)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~--~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi 153 (493)
..+.|+..|.. +++..+|+..- ...+-+.|-++=+. -.|.|||+.|.||.||
T Consensus 436 ~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~AG~~--G~VTIATNMAGRGTDI 490 (870)
T CHL00122 436 KSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGRK--GSITIATNMAGRGTDI 490 (870)
T ss_pred HHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhcCCC--CcEEEeccccCCCcCe
Confidence 99999999985 89999999863 23444444444333 4599999999999998
No 134
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.31 E-value=6.7e-06 Score=89.17 Aligned_cols=119 Identities=18% Similarity=0.261 Sum_probs=89.5
Q ss_pred ccHHHHHHHHHHHHcC--CCeEEEEeCChHHHHHHHHHHH-ccCceEEEeCCCCHHHHHHHHhcccCCC---EEEEEecc
Q 011113 72 TSKRTILSDLITVYAK--GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK---FTVLVATD 145 (493)
Q Consensus 72 ~~k~~~l~~ll~~~~~--~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~---~~iLVaT~ 145 (493)
..|+..|..++..... ..++.+..|.+...+.+..... .++.+..|||.|+..+|+.+++.|.+-. .-.|.+|.
T Consensus 577 s~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsK 656 (776)
T KOG0390|consen 577 SGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSK 656 (776)
T ss_pred hhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecc
Confidence 3456666666543311 1233333344444444443333 3889999999999999999999998732 44678889
Q ss_pred cccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEe
Q 011113 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (493)
Q Consensus 146 ~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l 190 (493)
+.+.||++-..+.||.||++|+++.-.|.+.|+-|.|++-.|+++
T Consensus 657 Agg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 657 AGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred cccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 999999999999999999999999999999999999988777765
No 135
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.20 E-value=1.1e-05 Score=89.52 Aligned_cols=122 Identities=21% Similarity=0.344 Sum_probs=101.1
Q ss_pred ccHHHHHHHHHHHHc---------------CCCeEEEEeCChHHHHHHHHHHHc-cC---ceEEEeCCCCHHHHHHHHhc
Q 011113 72 TSKRTILSDLITVYA---------------KGGKTIVFTQTKRDADEVSLALTS-II---ASEALHGDISQHQRERTLNG 132 (493)
Q Consensus 72 ~~k~~~l~~ll~~~~---------------~~~~~IVF~~t~~~~~~l~~~L~~-~~---~~~~lhg~~~~~~r~~~~~~ 132 (493)
.-|+.+|.++|..-. .+.++||||.-+...+.+.+.|.+ .+ ....|.|..++.+|.++.++
T Consensus 1309 spKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~ 1388 (1549)
T KOG0392|consen 1309 SPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVER 1388 (1549)
T ss_pred chhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHH
Confidence 457788888876541 246999999999999999988875 32 23468899999999999999
Q ss_pred ccCC-CEEEE-EecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceE--EEecCh
Q 011113 133 FRQG-KFTVL-VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTA--ILMFTS 193 (493)
Q Consensus 133 F~~g-~~~iL-VaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~--i~l~~~ 193 (493)
|.++ .++|| ++|.|-..|+|+...+.||.++-.|++..=+|..-||.|.|++-++ |-|++.
T Consensus 1389 FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItr 1453 (1549)
T KOG0392|consen 1389 FNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITR 1453 (1549)
T ss_pred hcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhc
Confidence 9998 78876 5778999999999999999999999999999999999999976554 444544
No 136
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.19 E-value=1.4e-05 Score=88.05 Aligned_cols=122 Identities=20% Similarity=0.334 Sum_probs=98.5
Q ss_pred ccHHHHHHHHHHHH-cCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCC--EEEEEecccc
Q 011113 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK--FTVLVATDVA 147 (493)
Q Consensus 72 ~~k~~~l~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~--~~iLVaT~~~ 147 (493)
.-|++.|.-||..+ ..+.++|||+.-.+..+.|..+|.- ++....|.|...-++|+..+++|.... +..|++|-.-
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 45777777777655 3568999999999999999999984 777888999999999999999998753 5678899999
Q ss_pred cccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCC--cceEEEecCh
Q 011113 148 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK--EGTAILMFTS 193 (493)
Q Consensus 148 ~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~--~g~~i~l~~~ 193 (493)
..|||+-..+.||.||--|++..-.|.--|+.|.|+ .-+.|-|++.
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe 1386 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISE 1386 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeecc
Confidence 999999999999999999988766665555555553 3455556665
No 137
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.16 E-value=4.4e-05 Score=87.15 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=61.2
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHccCc---eEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCc--cEEEe
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTSIIA---SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV--DLIIH 161 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~~---~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v--~~VI~ 161 (493)
.++++|||+++.+..+.+++.|..... ...+.-+++...|.+++++|++++-.||++|..+.+|||+|+- .+||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457999999999999999999975321 2223224444568899999998888899999999999999965 67776
Q ss_pred CCCC
Q 011113 162 YELP 165 (493)
Q Consensus 162 ~~~p 165 (493)
..+|
T Consensus 831 ~kLP 834 (928)
T PRK08074 831 VRLP 834 (928)
T ss_pred ecCC
Confidence 6655
No 138
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.12 E-value=8.8e-05 Score=81.46 Aligned_cols=126 Identities=17% Similarity=0.169 Sum_probs=79.5
Q ss_pred cEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEE-EEEEcCcccHHHH-HHHHHHHHcCCCeEEEEeCChH
Q 011113 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTI-LSDLITVYAKGGKTIVFTQTKR 99 (493)
Q Consensus 22 q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~-l~~ll~~~~~~~~~IVF~~t~~ 99 (493)
.+-.||.|.-.+..++.+-|--+- +.+. .+++.....+ -.+......|..+ +.++...+..+.++||-|.|.+
T Consensus 376 kLsGMTGTa~te~~Ef~~iY~l~V--v~IP---TnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe 450 (939)
T PRK12902 376 KLAGMTGTAKTEEVEFEKTYKLEV--TVIP---TNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVE 450 (939)
T ss_pred hhcccCCCCHHHHHHHHHHhCCcE--EEcC---CCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHH
Confidence 455688888766666666553322 2222 1111111111 1122233455544 4456666678899999999999
Q ss_pred HHHHHHHHHHc-cCceEEEeCC-CC-HHHHHHHHhcccCCCEEEEEecccccccCCCC
Q 011113 100 DADEVSLALTS-IIASEALHGD-IS-QHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (493)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~-~~-~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip 154 (493)
..+.|+..|.+ ++++.+|+.. .. ..+-+.+-++=+.| .|-|||+.|.||.||.
T Consensus 451 ~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~~G--aVTIATNMAGRGTDIk 506 (939)
T PRK12902 451 KSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGRKG--AVTIATNMAGRGTDII 506 (939)
T ss_pred HHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCCCC--cEEEeccCCCCCcCEe
Confidence 99999999985 8899899986 22 33434444443333 5899999999999983
No 139
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.10 E-value=0.00017 Score=80.58 Aligned_cols=89 Identities=17% Similarity=0.188 Sum_probs=67.4
Q ss_pred EEEeCChHHHHHHHHHHHcc-------CceEEEeCCCCHHHHHHHHhcc----------------------cC----CCE
Q 011113 92 IVFTQTKRDADEVSLALTSI-------IASEALHGDISQHQRERTLNGF----------------------RQ----GKF 138 (493)
Q Consensus 92 IVF~~t~~~~~~l~~~L~~~-------~~~~~lhg~~~~~~r~~~~~~F----------------------~~----g~~ 138 (493)
||-+++++.+-.++..|... +.+.++|+..+...|..+++.. ++ +..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 67778888888888877632 4478899999877776655443 11 356
Q ss_pred EEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCC
Q 011113 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 183 (493)
Q Consensus 139 ~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~ 183 (493)
.|+|+|.|++.|+|+ +.+++|- -|.+..+.+||+||+.|.+.
T Consensus 840 ~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 840 FIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred eEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhccccccc
Confidence 799999999999999 4565553 35679999999999999763
No 140
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.09 E-value=0.0003 Score=74.24 Aligned_cols=68 Identities=22% Similarity=0.359 Sum_probs=51.6
Q ss_pred eEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc------cccccCCCCCccE
Q 011113 90 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVDL 158 (493)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidip~v~~ 158 (493)
++||.++|++.|.++++.+.. .+.+..++|+.+...+...+. +..+|||+|+ .....+++..+.+
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLR----GGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHc----CCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 799999999999999888764 356778899988776544332 4678999996 2344567888888
Q ss_pred EEe
Q 011113 159 IIH 161 (493)
Q Consensus 159 VI~ 161 (493)
||.
T Consensus 153 lVi 155 (456)
T PRK10590 153 LVL 155 (456)
T ss_pred EEe
Confidence 774
No 141
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.06 E-value=1.7e-05 Score=80.52 Aligned_cols=104 Identities=19% Similarity=0.378 Sum_probs=89.9
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCC-CEEE-EEecccccccCCCCCccEEEeC
Q 011113 86 AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG-KFTV-LVATDVAARGLDIPNVDLIIHY 162 (493)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g-~~~i-LVaT~~~~~Gidip~v~~VI~~ 162 (493)
.++.|.+|||......+.|...+.+ ++....+.|..+..+|+...+.|+.. ++.| +++-.++..||++...+.||..
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFa 569 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFA 569 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEE
Confidence 3567999999999999999999985 89999999999999999999999864 4444 4555788999999999999999
Q ss_pred CCCCChhHHHHHhhccCCCCCcceEEE
Q 011113 163 ELPNDPETFVHRSGRTGRAGKEGTAIL 189 (493)
Q Consensus 163 ~~p~~~~~y~qr~GR~gR~g~~g~~i~ 189 (493)
.++|++.-++|.--|+.|.|++..+.+
T Consensus 570 EL~wnPgvLlQAEDRaHRiGQkssV~v 596 (689)
T KOG1000|consen 570 ELHWNPGVLLQAEDRAHRIGQKSSVFV 596 (689)
T ss_pred EecCCCceEEechhhhhhccccceeeE
Confidence 999999999999999999887654433
No 142
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.06 E-value=3.4e-05 Score=78.34 Aligned_cols=107 Identities=24% Similarity=0.349 Sum_probs=86.1
Q ss_pred ccHHHHHHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccC-CCEEEEEecccccc
Q 011113 72 TSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ-GKFTVLVATDVAAR 149 (493)
Q Consensus 72 ~~k~~~l~~ll~~~~-~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~-g~~~iLVaT~~~~~ 149 (493)
..|..+..-||+.+. .+.++|||..+.-...+.+-.|.+ -.++|..+|.+|.+|++.|+. ..++.+.-+.|...
T Consensus 526 P~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDt 601 (776)
T KOG1123|consen 526 PNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDT 601 (776)
T ss_pred cchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC----ceEECCCchhHHHHHHHhcccCCccceEEEeeccCc
Confidence 356677777777764 467999999887776666666643 458999999999999999985 46888888999999
Q ss_pred cCCCCCccEEEeCCCC-CChhHHHHHhhccCCCC
Q 011113 150 GLDIPNVDLIIHYELP-NDPETFVHRSGRTGRAG 182 (493)
Q Consensus 150 Gidip~v~~VI~~~~p-~~~~~y~qr~GR~gR~g 182 (493)
.||+|..+++|+...- -+...-.||.||.-|+-
T Consensus 602 SiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 602 SIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred cccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 9999999999986533 36777889999998865
No 143
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.06 E-value=2.3e-05 Score=85.26 Aligned_cols=82 Identities=28% Similarity=0.459 Sum_probs=70.8
Q ss_pred eEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCC-CCCChhHHHHHhhccCCCC--CcceEEEe
Q 011113 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE-LPNDPETFVHRSGRTGRAG--KEGTAILM 190 (493)
Q Consensus 114 ~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~-~p~~~~~y~qr~GR~gR~g--~~g~~i~l 190 (493)
+.++|++|...+|..+.--||.|...||+||..++.|||+|.-++|+--| +-.++-.|.|++|||||.| ..|.++.+
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~Fm 1044 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFM 1044 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEE
Confidence 45679999999999999999999999999999999999999888888665 4458999999999999988 55777777
Q ss_pred cChhh
Q 011113 191 FTSSQ 195 (493)
Q Consensus 191 ~~~~e 195 (493)
=-|..
T Consensus 1045 giP~~ 1049 (1330)
T KOG0949|consen 1045 GIPRQ 1049 (1330)
T ss_pred eCcHH
Confidence 55543
No 144
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.00 E-value=5.9e-05 Score=80.56 Aligned_cols=123 Identities=21% Similarity=0.331 Sum_probs=102.9
Q ss_pred cHHHHHHHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCC--EEEEEeccccc
Q 011113 73 SKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK--FTVLVATDVAA 148 (493)
Q Consensus 73 ~k~~~l~~ll~~~~-~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~--~~iLVaT~~~~ 148 (493)
.|...|..||.... ++.++|||..-....+.|...|.. .+....|.|...-..|+.+++.|...+ .-.|++|.+-.
T Consensus 761 gK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG 840 (941)
T KOG0389|consen 761 GKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGG 840 (941)
T ss_pred hhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCc
Confidence 46677777776654 457999999999999999888884 788899999999999999999998754 45789999999
Q ss_pred ccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCC--cceEEEecChhh
Q 011113 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK--EGTAILMFTSSQ 195 (493)
Q Consensus 149 ~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~--~g~~i~l~~~~e 195 (493)
-|||+-..++||.+|+..++-.=.|.--|+.|.|+ +-++|.|++...
T Consensus 841 ~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 841 FGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred ceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 99999999999999998888888888888888884 455666776643
No 145
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.98 E-value=7.2e-05 Score=84.03 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=57.8
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCC--CccEEEeC
Q 011113 86 AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP--NVDLIIHY 162 (493)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip--~v~~VI~~ 162 (493)
..++++||++++.+..+.+++.|.. .+.+ ...+.-. .+.+++++|++++-.||++|..+.+|||+| +...||..
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 4568999999999999999999874 3333 3444221 256689999998888999999999999997 34555555
Q ss_pred CCC
Q 011113 163 ELP 165 (493)
Q Consensus 163 ~~p 165 (493)
.+|
T Consensus 722 kLP 724 (820)
T PRK07246 722 RLP 724 (820)
T ss_pred cCC
Confidence 544
No 146
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.97 E-value=0.00025 Score=74.01 Aligned_cols=219 Identities=16% Similarity=0.242 Sum_probs=125.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc-----ccccc-CCCCCc
Q 011113 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNV 156 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~G-idip~v 156 (493)
...+||.+|||+.|.++...+.+ .+.+.+++|+.+...+..-+++ -++|+|||+ .+..| +|+..|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~----gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER----GVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc----CCcEEEeCChHHHHHHHcCCccccce
Confidence 45799999999999999888764 2558999999998888877776 689999997 44444 788899
Q ss_pred cEEE--------eCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCCCHHHHH-HHHHH
Q 011113 157 DLII--------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL-ESSAE 227 (493)
Q Consensus 157 ~~VI--------~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~-~~~~~ 227 (493)
+++| ..++-.++..+++.+.|+-| -.++++.+-...++.|...+-.....+.+-..++.. ...+.
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r------Qtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~ 314 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR------QTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIR 314 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc------cEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchh
Confidence 9988 34455678888888888766 233333333344455544433344444333332111 11122
Q ss_pred HHHHHhcCCCccchhhhHHHHHHHHhh------------hCHHHHHHHHHHHcCCC---------CCCCCcccccCCCCe
Q 011113 228 QVVATLNGVHPESVEFFTPTAQRLIEE------------KGTDALAAALAQLSGFS---------RPPSSRSLINHEQGW 286 (493)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~~~~~l~~~------------~~~~~l~aal~~~~~~~---------~~~~~~~~~~~~~~~ 286 (493)
+++..+.. .+......+.+++.... ...+.|+..+... +++ +..+...|...+++-
T Consensus 315 qive~~~~--~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~-~~~a~~iHGd~sQ~eR~~~L~~FreG~ 391 (519)
T KOG0331|consen 315 QIVEVCDE--TAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK-GWPAVAIHGDKSQSERDWVLKGFREGK 391 (519)
T ss_pred hhhhhcCH--HHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc-CcceeeecccccHHHHHHHHHhcccCC
Confidence 22221110 00011111111121100 0122333333331 111 111112244466788
Q ss_pred EEEEEeecCccccCCcchhhHHHHhhhhcCcCcCc
Q 011113 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE 321 (493)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 321 (493)
..++|+++. +.++++..+|-..|+...|...++
T Consensus 392 ~~vLVATdV--AaRGLDi~dV~lVInydfP~~vEd 424 (519)
T KOG0331|consen 392 SPVLVATDV--AARGLDVPDVDLVINYDFPNNVED 424 (519)
T ss_pred cceEEEccc--ccccCCCccccEEEeCCCCCCHHH
Confidence 888999887 678888888888888777765554
No 147
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.96 E-value=0.00021 Score=79.06 Aligned_cols=103 Identities=20% Similarity=0.266 Sum_probs=73.2
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHccCc--eEEEeCCCCHHHHHHHHhcccCCCE-EEEEecccccccCCCCCc--cEEEe
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTSIIA--SEALHGDISQHQRERTLNGFRQGKF-TVLVATDVAARGLDIPNV--DLIIH 161 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~~--~~~lhg~~~~~~r~~~~~~F~~g~~-~iLVaT~~~~~Gidip~v--~~VI~ 161 (493)
.++++|||+++.+..+.+++.+..... ....++.. .+...++.|+...- .++|+|..+++|||+|+- ..||.
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI 554 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVI 554 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEE
Confidence 346999999999999999999986432 44455554 44578888887554 899999999999999865 56776
Q ss_pred CCCCC------------------------------ChhHHHHHhhccCCCCCcceEEEecC
Q 011113 162 YELPN------------------------------DPETFVHRSGRTGRAGKEGTAILMFT 192 (493)
Q Consensus 162 ~~~p~------------------------------~~~~y~qr~GR~gR~g~~g~~i~l~~ 192 (493)
..+|. -...+.|-+||.=|.-..--++++++
T Consensus 555 ~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD 615 (654)
T COG1199 555 VGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLD 615 (654)
T ss_pred EecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEec
Confidence 55553 23344788999988543333333333
No 148
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.94 E-value=4.2e-05 Score=82.52 Aligned_cols=92 Identities=25% Similarity=0.366 Sum_probs=75.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHccC------ceEEEeCCCCHHHHHHHHhcccC--CCEEEEEecccccccCCCCCccEE
Q 011113 88 GGKTIVFTQTKRDADEVSLALTSII------ASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIPNVDLI 159 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~~------~~~~lhg~~~~~~r~~~~~~F~~--g~~~iLVaT~~~~~Gidip~v~~V 159 (493)
-.|+||||.+..+|+.+...|.+.+ .+..+.++-.+.+ ..++.|.. .--+|.|+.+++..|||+|.|..+
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeee
Confidence 3699999999999999999998532 3677888754443 34555554 335688999999999999999999
Q ss_pred EeCCCCCChhHHHHHhhccCCC
Q 011113 160 IHYELPNDPETFVHRSGRTGRA 181 (493)
Q Consensus 160 I~~~~p~~~~~y~qr~GR~gR~ 181 (493)
|.+..-.|...|.||+||.-|.
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eehhhhhhHHHHHHHhcCcccc
Confidence 9999999999999999998883
No 149
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.93 E-value=0.00012 Score=80.64 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=73.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc------CceEEEeCCCCHH---------------------HHHHHHhcccC-CCEE
Q 011113 88 GGKTIVFTQTKRDADEVSLALTSI------IASEALHGDISQH---------------------QRERTLNGFRQ-GKFT 139 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~------~~~~~lhg~~~~~---------------------~r~~~~~~F~~-g~~~ 139 (493)
..+++|||.++..|..+++.|.+. ..+.++++..... ....++++|++ +.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 479999999999999999888642 2345555543222 23478889976 6789
Q ss_pred EEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCC
Q 011113 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 181 (493)
Q Consensus 140 iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~ 181 (493)
|||.+|.+-.|.|.|.+++++...+-.+. .++|.+||+.|.
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred EEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccc
Confidence 99999999999999999998887765554 589999999993
No 150
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.91 E-value=7.7e-05 Score=85.05 Aligned_cols=118 Identities=19% Similarity=0.314 Sum_probs=101.6
Q ss_pred cHHHHHHHHH-H-HHcCCC--eEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCC--CEEEEEecc
Q 011113 73 SKRTILSDLI-T-VYAKGG--KTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG--KFTVLVATD 145 (493)
Q Consensus 73 ~k~~~l~~ll-~-~~~~~~--~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g--~~~iLVaT~ 145 (493)
.|...+.+++ . ...... ++|||++.....+.+...|.. .+....++|.++.+.|...++.|.++ ..-+|++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 6777777777 3 334455 899999999999999999986 46899999999999999999999985 456778889
Q ss_pred cccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEe
Q 011113 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (493)
Q Consensus 146 ~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l 190 (493)
+...|+|+...++||++|+.|++....|...|+.|.|++..+.++
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 999999999999999999999999999999999998866555444
No 151
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.86 E-value=0.00014 Score=80.59 Aligned_cols=77 Identities=26% Similarity=0.430 Sum_probs=57.8
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHccC-ceEEEeCCCCHHHHHHHHhccc----CCCEEEEEecccccccCCCCC--ccE
Q 011113 86 AKGGKTIVFTQTKRDADEVSLALTSII-ASEALHGDISQHQRERTLNGFR----QGKFTVLVATDVAARGLDIPN--VDL 158 (493)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~~~-~~~~lhg~~~~~~r~~~~~~F~----~g~~~iLVaT~~~~~Gidip~--v~~ 158 (493)
...+.+|||+++.+..+.++..|.... .....++. ..+..+++.|+ .++-.||++|..+.+|||+|+ +++
T Consensus 532 ~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 532 EKHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 345679999999999999999987422 22344554 35677886666 466779999999999999986 677
Q ss_pred EEeCCCC
Q 011113 159 IIHYELP 165 (493)
Q Consensus 159 VI~~~~p 165 (493)
||...+|
T Consensus 609 vII~kLP 615 (697)
T PRK11747 609 VIITKIP 615 (697)
T ss_pred EEEEcCC
Confidence 8876655
No 152
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.84 E-value=0.00013 Score=79.71 Aligned_cols=121 Identities=21% Similarity=0.319 Sum_probs=104.9
Q ss_pred cccHHHHHHHHHHHH-cCCCeEEEEeCChHHHHHHHHHHH-ccCceEEEeCCCCHHHHHHHHhcccCCC---EEEEEecc
Q 011113 71 ATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK---FTVLVATD 145 (493)
Q Consensus 71 ~~~k~~~l~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~---~~iLVaT~ 145 (493)
..-|.++|..+|..+ ..++++|.||.-....+.+..+|. +.+....+.|.....+|-..++.|..-. +..|.+|-
T Consensus 708 ~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstr 787 (1157)
T KOG0386|consen 708 VSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTR 787 (1157)
T ss_pred hccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeec
Confidence 456889998888665 457899999999999999999998 5788889999999999999999998643 56789999
Q ss_pred cccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEec
Q 011113 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 191 (493)
Q Consensus 146 ~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~ 191 (493)
+...|+|+...+.||.||.-|++....|+--|+.|.|..-.+-++.
T Consensus 788 agglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 788 AGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred ccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 9999999999999999999999999999999999999665555553
No 153
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=97.80 E-value=0.0001 Score=77.69 Aligned_cols=122 Identities=20% Similarity=0.335 Sum_probs=103.9
Q ss_pred ccHHHHHHHHHHHH-cCCCeEEEEeCChHHHHHHHHHHH-ccCceEEEeCCCCHHHHHHHHhcccCCC-EEEEEeccccc
Q 011113 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK-FTVLVATDVAA 148 (493)
Q Consensus 72 ~~k~~~l~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~-~~iLVaT~~~~ 148 (493)
..|+.+|..||..+ ..+.++|+|..-.+..+.+.++|. +.+....|.|.....+|..++.+|+..+ +-.|++|-+..
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 35677777777655 456799999999999999999998 5899999999999999999999999754 55789999999
Q ss_pred ccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcc--eEEEecCh
Q 011113 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG--TAILMFTS 193 (493)
Q Consensus 149 ~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g--~~i~l~~~ 193 (493)
.||++...+.||.||..|++..-.|..-|+.|-|.+- ++|-+++.
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITR 1153 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccc
Confidence 9999999999999999999999999999999988554 45555543
No 154
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.73 E-value=0.0001 Score=66.69 Aligned_cols=105 Identities=24% Similarity=0.396 Sum_probs=70.7
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHccC---ceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc--cccccCCCCC--ccEE
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTSII---ASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPN--VDLI 159 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~---~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~--~~~~Gidip~--v~~V 159 (493)
.++.+|||+++.+..+.+...+.... ....+.- ...++.++++.|+.+.-.||+++. .+.+|||+|+ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 45899999999999999999987532 1223332 356788999999999999999998 9999999996 6678
Q ss_pred EeCCCCC----Ch--------------------------hHHHHHhhccCCCCCcceEEEecCh
Q 011113 160 IHYELPN----DP--------------------------ETFVHRSGRTGRAGKEGTAILMFTS 193 (493)
Q Consensus 160 I~~~~p~----~~--------------------------~~y~qr~GR~gR~g~~g~~i~l~~~ 193 (493)
|...+|. ++ ....|-+||.=|....--+++++++
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 8877773 11 1125778999887655444555554
No 155
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.72 E-value=0.00013 Score=74.04 Aligned_cols=121 Identities=18% Similarity=0.235 Sum_probs=97.0
Q ss_pred cHHHHHHHHHHHHcC---CCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCC-CEE-EEEeccc
Q 011113 73 SKRTILSDLITVYAK---GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG-KFT-VLVATDV 146 (493)
Q Consensus 73 ~k~~~l~~ll~~~~~---~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g-~~~-iLVaT~~ 146 (493)
.|.++|.+-|..+.+ .-+.|||..-....+.+.-.|.+ ++.+..|.|.|++..|..+++.|++. .+. .||+-.+
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkA 699 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKA 699 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEecc
Confidence 466666554444322 34889999999999999888886 89999999999999999999999985 444 4566677
Q ss_pred ccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCC--CcceEEEecCh
Q 011113 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG--KEGTAILMFTS 193 (493)
Q Consensus 147 ~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g--~~g~~i~l~~~ 193 (493)
...-+|+-..++|+.+|+.|++..-.|.--|..|.| ++-.++.|+-.
T Consensus 700 GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iE 748 (791)
T KOG1002|consen 700 GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIE 748 (791)
T ss_pred CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehh
Confidence 777799999999999999999998888888888877 55667777654
No 156
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.70 E-value=0.00028 Score=76.37 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=29.8
Q ss_pred cCCcchhhHHHHhhhhcCcCcCccccEEEeeccccceeEeecCHHHHHHHHh
Q 011113 299 RGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLN 350 (493)
Q Consensus 299 ~~~~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~~~~gs~fdvp~~~a~~~~~ 350 (493)
...+.|-+|+-|-+++.......|-+|+-|. -+++..+.|..+..
T Consensus 1056 MslVsPLQLLLF~SrKVqsdgq~IV~VDdWI-------klqIshEaAAcItg 1100 (1282)
T KOG0921|consen 1056 MSLVSPLQLLLFGSRKVQSDGQGIVRVDDWI-------KLQISHEAAACITG 1100 (1282)
T ss_pred ccccChHHHhhhhhhhccccCcceEEeecee-------eEeccHHHHHHHhh
Confidence 3346787888777776665555566665554 37898888866543
No 157
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.56 E-value=0.0015 Score=70.78 Aligned_cols=77 Identities=19% Similarity=0.206 Sum_probs=60.5
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHccCc-eEEEeCCCCHHHHHHHHhcccC----CCEEEEEecccccccCCC--------
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTSIIA-SEALHGDISQHQRERTLNGFRQ----GKFTVLVATDVAARGLDI-------- 153 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~~-~~~lhg~~~~~~r~~~~~~F~~----g~~~iLVaT~~~~~Gidi-------- 153 (493)
..++++|.+.+....+.+++.|...+. ...++|+.+ .+...+++|+. +.-.||++|+.+..|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 467999999999999999999986543 344566542 44667888886 367899999999999999
Q ss_pred --CCccEEEeCCCC
Q 011113 154 --PNVDLIIHYELP 165 (493)
Q Consensus 154 --p~v~~VI~~~~p 165 (493)
..+++||...+|
T Consensus 547 ~G~~Ls~ViI~kLP 560 (636)
T TIGR03117 547 KDNLLTDLIITCAP 560 (636)
T ss_pred CCCcccEEEEEeCC
Confidence 357888877766
No 158
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.51 E-value=0.0029 Score=64.89 Aligned_cols=107 Identities=15% Similarity=0.282 Sum_probs=72.5
Q ss_pred eEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc------cccccCCCCCccE
Q 011113 90 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVDL 158 (493)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidip~v~~ 158 (493)
-.+|.|+|++.|.++...-++ ++.+.++||+.+.-++...|+. ...|+|||+ |--.++|+..|++
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~----g~EivVaTPgRlid~VkmKatn~~rvS~ 373 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKE----GAEIVVATPGRLIDMVKMKATNLSRVSY 373 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhc----CCeEEEechHHHHHHHHhhcccceeeeE
Confidence 357788999999988766543 4788999999999998888873 678999998 4456789999998
Q ss_pred EEe------C--CCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhC
Q 011113 159 IIH------Y--ELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (493)
Q Consensus 159 VI~------~--~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~ 207 (493)
+|. | ++-..+.+..|.+ ++-...++++.+-...+..+.+.+-
T Consensus 374 LV~DEadrmfdmGfe~qVrSI~~hi-------rpdrQtllFsaTf~~kIe~lard~L 423 (731)
T KOG0339|consen 374 LVLDEADRMFDMGFEPQVRSIKQHI-------RPDRQTLLFSATFKKKIEKLARDIL 423 (731)
T ss_pred EEEechhhhhccccHHHHHHHHhhc-------CCcceEEEeeccchHHHHHHHHHHh
Confidence 663 2 2223345555544 2333444555555555566655543
No 159
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=97.51 E-value=3.1e-05 Score=48.43 Aligned_cols=17 Identities=41% Similarity=1.257 Sum_probs=16.0
Q ss_pred ccccCCCCCcccCCCCC
Q 011113 477 ACFNCGKSGHRASECPN 493 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~~ 493 (493)
.|+.|++.|||.+|||+
T Consensus 10 ~C~~C~~~GH~i~dCP~ 26 (32)
T PF13696_consen 10 VCHRCGQKGHWIQDCPT 26 (32)
T ss_pred EeecCCCCCccHhHCCC
Confidence 59999999999999995
No 160
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.47 E-value=0.00093 Score=73.24 Aligned_cols=119 Identities=24% Similarity=0.281 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCC
Q 011113 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (493)
Q Consensus 75 ~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi 153 (493)
..++.++...+.+++++||-+.+.+..+.+.+.|.+ +++..+|...-...+-+.+.+.-+.| .|-|||+.|.||.||
T Consensus 416 ~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDI 493 (822)
T COG0653 416 KAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIAQAGQPG--AVTIATNMAGRGTDI 493 (822)
T ss_pred HHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHHhhcCCCC--ccccccccccCCccc
Confidence 345566667778899999999999999999999985 88888887776555555555444443 478999999999998
Q ss_pred CCcc-----------EEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhh
Q 011113 154 PNVD-----------LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (493)
Q Consensus 154 p~v~-----------~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e 195 (493)
.--. +||-..--.+..---|--||+||.|.+|.+-.+++-.+
T Consensus 494 kLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 494 KLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred ccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 4222 34443333333333488899999999998887776544
No 161
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=97.39 E-value=0.0018 Score=62.75 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=6.2
Q ss_pred eecCHHHHHHHHh
Q 011113 338 FDLPEEIAKELLN 350 (493)
Q Consensus 338 fdvp~~~a~~~~~ 350 (493)
.|+.+..|.++-+
T Consensus 284 ~~~Re~Taski~k 296 (465)
T KOG3973|consen 284 MDRRERTASKIHK 296 (465)
T ss_pred cchhhhhhhhhcc
Confidence 4555555544443
No 162
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.38 E-value=0.0016 Score=67.17 Aligned_cols=68 Identities=18% Similarity=0.303 Sum_probs=48.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc-----ccccc-CCCCCcc
Q 011113 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNVD 157 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~G-idip~v~ 157 (493)
..+||+.||++.|++++..-++ .+.+...+++.+..... ++-...++|||||+ ++++| |.++++.
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~----~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k 228 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQL----RFIKRGCDILVATPGRLKDLIERGKISLDNCK 228 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhh----hhhccCccEEEecCchhhhhhhcceeehhhCc
Confidence 5789999999999999988775 25677778884443333 23334789999997 45554 6666676
Q ss_pred EEE
Q 011113 158 LII 160 (493)
Q Consensus 158 ~VI 160 (493)
++|
T Consensus 229 ~~v 231 (482)
T KOG0335|consen 229 FLV 231 (482)
T ss_pred EEE
Confidence 655
No 163
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.37 E-value=0.0071 Score=67.41 Aligned_cols=79 Identities=15% Similarity=0.246 Sum_probs=57.6
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHcc-C-------ceEEEeCCCCHHHHHHHHhcccC----CCEEEEEec--ccccccCC
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTSI-I-------ASEALHGDISQHQRERTLNGFRQ----GKFTVLVAT--DVAARGLD 152 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~-~-------~~~~lhg~~~~~~r~~~~~~F~~----g~~~iLVaT--~~~~~Gid 152 (493)
.++.+|||+++....+.+++.+... + ....+-+ -...+++.+++.|+. +.-.||+|+ ..+++|||
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGID 599 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGID 599 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCccc
Confidence 3688999999999999988877631 1 1122222 122578889999964 345699998 88999999
Q ss_pred CCC--ccEEEeCCCCC
Q 011113 153 IPN--VDLIIHYELPN 166 (493)
Q Consensus 153 ip~--v~~VI~~~~p~ 166 (493)
+++ ...||..++|.
T Consensus 600 f~~~~~r~ViivGlPf 615 (705)
T TIGR00604 600 FCDDLGRAVIMVGIPY 615 (705)
T ss_pred cCCCCCcEEEEEccCC
Confidence 986 57788888775
No 164
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=97.31 E-value=0.0017 Score=70.92 Aligned_cols=119 Identities=18% Similarity=0.243 Sum_probs=98.7
Q ss_pred ccHHHHHHHHHHHH-cCCCeEEEEeCChHHHHHHHHHHHc----c-------------------CceEEEeCCCCHHHHH
Q 011113 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS----I-------------------IASEALHGDISQHQRE 127 (493)
Q Consensus 72 ~~k~~~l~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~----~-------------------~~~~~lhg~~~~~~r~ 127 (493)
..|+.+|.+||..- .-+.++|||..+....+.|..+|.. + .....|.|..+..+|+
T Consensus 1125 SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~ 1204 (1567)
T KOG1015|consen 1125 SGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRK 1204 (1567)
T ss_pred CcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHH
Confidence 45677777777654 3478999999999998888888752 1 1345678899999999
Q ss_pred HHHhcccCCC----EEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEe
Q 011113 128 RTLNGFRQGK----FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (493)
Q Consensus 128 ~~~~~F~~g~----~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l 190 (493)
.+.+.|.+-. .-.||+|-+.+.|||+-..+-||.+|..|++.--+|-+=|+-|.|++-.||++
T Consensus 1205 k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1205 KWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 9999998732 23799999999999999999999999999999999999999999987777775
No 165
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.00032 Score=74.94 Aligned_cols=67 Identities=22% Similarity=0.406 Sum_probs=55.3
Q ss_pred EEEEeCChHHHHHHHHHHHc------cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc-----ccccc-CCCCCccE
Q 011113 91 TIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNVDL 158 (493)
Q Consensus 91 ~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~G-idip~v~~ 158 (493)
+||++||++.|.++++.+.. .+.+..++|+++...+...++. + .+|||+|+ .+.++ +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 99999999999999998863 2568899999998877766655 5 89999998 45555 89999998
Q ss_pred EEe
Q 011113 159 IIH 161 (493)
Q Consensus 159 VI~ 161 (493)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 883
No 166
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.21 E-value=0.0075 Score=68.01 Aligned_cols=184 Identities=15% Similarity=0.247 Sum_probs=114.6
Q ss_pred HHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcC-cccHH-----HHHHHHHH
Q 011113 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSKR-----TILSDLIT 83 (493)
Q Consensus 10 l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~-----~~l~~ll~ 83 (493)
++.|..++-++.+++.+|..+.+ +++++ ++.....+.+..... ..+..++...+... ..... ..+..+..
T Consensus 1279 ~r~ia~q~~k~ir~v~ls~~lan-a~d~i--g~s~~~v~Nf~p~~R-~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~ 1354 (1674)
T KOG0951|consen 1279 MRYIASQLEKKIRVVALSSSLAN-ARDLI--GASSSGVFNFSPSVR-PVPLEIHIQSVDISHFESRMLAMTKPTYTAIVR 1354 (1674)
T ss_pred HHHHHHHHHhheeEEEeehhhcc-chhhc--cccccceeecCcccC-CCceeEEEEEeccchhHHHHHHhhhhHHHHHHH
Confidence 56677777778888888877643 33342 333333333322111 11222222222211 11111 12233333
Q ss_pred HHcCCCeEEEEeCChHHHHHHHHHHHc-----------------------cCceEEEeCCCCHHHHHHHHhcccCCCEEE
Q 011113 84 VYAKGGKTIVFTQTKRDADEVSLALTS-----------------------IIASEALHGDISQHQRERTLNGFRQGKFTV 140 (493)
Q Consensus 84 ~~~~~~~~IVF~~t~~~~~~l~~~L~~-----------------------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~i 140 (493)
......++|||+++++.|..++..|-. .++..+=|-+|+..+...+-.-|..|.++|
T Consensus 1355 ~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v 1434 (1674)
T KOG0951|consen 1355 HAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQV 1434 (1674)
T ss_pred HhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEE
Confidence 334568999999999999887665421 122333388999999999999999999999
Q ss_pred EEecccccccCCCCCccEEEe-----CC------CCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHH
Q 011113 141 LVATDVAARGLDIPNVDLIIH-----YE------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (493)
Q Consensus 141 LVaT~~~~~Gidip~v~~VI~-----~~------~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l 202 (493)
+|...- -.|+-... ++||- || .+.+.....|+.|+|.|+ +.|++++....+.+++++
T Consensus 1435 ~v~s~~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1435 CVMSRD-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred EEEEcc-cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHHh
Confidence 998765 66666533 33441 22 456789999999999884 589999988888777654
No 167
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.20 E-value=0.001 Score=74.04 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=41.1
Q ss_pred EecccccccCCCCC----------------------c----------cEEEeCCCCCChhHHHH--HhhccCCCCCcceE
Q 011113 142 VATDVAARGLDIPN----------------------V----------DLIIHYELPNDPETFVH--RSGRTGRAGKEGTA 187 (493)
Q Consensus 142 VaT~~~~~Gidip~----------------------v----------~~VI~~~~p~~~~~y~q--r~GR~gR~g~~g~~ 187 (493)
|+|.+...|+|++. + ++||.|++-.+..--+| |++|++|. +.+
T Consensus 431 ~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEvyra~r~~r~---~rV 507 (814)
T TIGR00596 431 FEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEVYKASRPLRP---LRV 507 (814)
T ss_pred ccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHHHHccCCCCC---cEE
Confidence 77888889999997 5 89999997666666666 77777665 567
Q ss_pred EEecCh---hhHHHHHHH
Q 011113 188 ILMFTS---SQRRTVRSL 202 (493)
Q Consensus 188 i~l~~~---~e~~~~~~l 202 (493)
|+++.. .|.+++..+
T Consensus 508 yfL~y~~S~EEq~yl~si 525 (814)
T TIGR00596 508 YFLYYGGSIEEQRYLTSL 525 (814)
T ss_pred EEEEECCcHHHHHHHHHH
Confidence 777643 334444444
No 168
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.18 E-value=0.027 Score=61.14 Aligned_cols=68 Identities=10% Similarity=0.199 Sum_probs=52.0
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc-----cccc--cCCCCCc
Q 011113 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR--GLDIPNV 156 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~--Gidip~v 156 (493)
.++||.++|++.|.++++.+.. .+.+..+||+.+...+...++. ..+|||+|+ .+.. .+++..+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~----~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQ----GVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhC----CCCEEEECHHHHHHHHHhccccchhhe
Confidence 5899999999999999887764 3668899999988877666643 578999996 2222 3667777
Q ss_pred cEEE
Q 011113 157 DLII 160 (493)
Q Consensus 157 ~~VI 160 (493)
.+||
T Consensus 161 ~~lV 164 (572)
T PRK04537 161 EICV 164 (572)
T ss_pred eeeE
Confidence 7766
No 169
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.05 E-value=0.0093 Score=65.42 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=46.6
Q ss_pred HHHHhcccCCCEEEEEecc----cccccCCCCCccEEEeCC------CCC------ChhHHHHHhhccCCCCCcceEEEe
Q 011113 127 ERTLNGFRQGKFTVLVATD----VAARGLDIPNVDLIIHYE------LPN------DPETFVHRSGRTGRAGKEGTAILM 190 (493)
Q Consensus 127 ~~~~~~F~~g~~~iLVaT~----~~~~Gidip~v~~VI~~~------~p~------~~~~y~qr~GR~gR~g~~g~~i~l 190 (493)
+.+++.|.. +.+|||+|. +++ +++++|+..| .|. ....+.|-+||+||..+.|.+++.
T Consensus 462 d~~l~~~~~-~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq 535 (665)
T PRK14873 462 DQVVDTVDA-GPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVV 535 (665)
T ss_pred HHHHHhhcc-CCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEE
Confidence 457888874 899999998 555 3567665433 232 233457899999999999999988
Q ss_pred cChhhHHHHHHH
Q 011113 191 FTSSQRRTVRSL 202 (493)
Q Consensus 191 ~~~~e~~~~~~l 202 (493)
..+.. ..++.+
T Consensus 536 ~~p~~-~~~~~l 546 (665)
T PRK14873 536 AESSL-PTVQAL 546 (665)
T ss_pred eCCCC-HHHHHH
Confidence 64433 334333
No 170
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.01 E-value=0.0039 Score=62.07 Aligned_cols=137 Identities=17% Similarity=0.232 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc---
Q 011113 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV--- 146 (493)
Q Consensus 75 ~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~--- 146 (493)
+.+|..|+.. .+...++|.+||++.|.++++.+.. ++.+..+-|++....+...+.+ +..|||||+-
T Consensus 117 LPIl~~LL~~-p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~k----kPhilVaTPGrL~ 191 (476)
T KOG0330|consen 117 LPILQRLLQE-PKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSK----KPHILVATPGRLW 191 (476)
T ss_pred HHHHHHHHcC-CCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhc----CCCEEEeCcHHHH
Confidence 4556666653 2346899999999999999988863 4789999999977655544433 6778999982
Q ss_pred ---c-cccCCCCCccEEE--------eCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeC
Q 011113 147 ---A-ARGLDIPNVDLII--------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (493)
Q Consensus 147 ---~-~~Gidip~v~~VI--------~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~ 214 (493)
. ..|+.+..+.+.| +.|+-...+.++-++- ...-.+|++.+....+++|++..-..+..+.
T Consensus 192 dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip-------~erqt~LfsATMt~kv~kL~rasl~~p~~v~ 264 (476)
T KOG0330|consen 192 DHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIP-------RERQTFLFSATMTKKVRKLQRASLDNPVKVA 264 (476)
T ss_pred HHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcC-------ccceEEEEEeecchhhHHHHhhccCCCeEEe
Confidence 2 4677777776655 4444444444544443 2234566666666677778777777777777
Q ss_pred CCCHHHHHH
Q 011113 215 PPVVEDVLE 223 (493)
Q Consensus 215 ~p~~~~~~~ 223 (493)
.++.-..+.
T Consensus 265 ~s~ky~tv~ 273 (476)
T KOG0330|consen 265 VSSKYQTVD 273 (476)
T ss_pred ccchhcchH
Confidence 666544443
No 171
>COG4889 Predicted helicase [General function prediction only]
Probab=96.89 E-value=0.00062 Score=73.70 Aligned_cols=93 Identities=18% Similarity=0.398 Sum_probs=74.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHc--------------c--CceEEEeCCCCHHHHHHHHh---cccCCCEEEEEecccccc
Q 011113 89 GKTIVFTQTKRDADEVSLALTS--------------I--IASEALHGDISQHQRERTLN---GFRQGKFTVLVATDVAAR 149 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~--------------~--~~~~~lhg~~~~~~r~~~~~---~F~~g~~~iLVaT~~~~~ 149 (493)
.++|-||.+.++..++++.+.. . +.+..+.|.|...+|...+. .|...+++||--.-.+++
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 3778999998888777766532 1 23445568888888865544 456678999988889999
Q ss_pred cCCCCCccEEEeCCCCCChhHHHHHhhccCCC
Q 011113 150 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 181 (493)
Q Consensus 150 Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~ 181 (493)
|+|+|.++.||.+++-.+..+.+|-+||+-|-
T Consensus 541 GVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 541 GVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred CCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999993
No 172
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=96.85 E-value=0.00055 Score=46.05 Aligned_cols=16 Identities=50% Similarity=1.273 Sum_probs=15.4
Q ss_pred ccccCCCCCcccCCCC
Q 011113 477 ACFNCGKSGHRASECP 492 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~ 492 (493)
-|.+|++.|||+.|||
T Consensus 6 ~CqkC~~~GH~tyeC~ 21 (42)
T PF13917_consen 6 RCQKCGQKGHWTYECP 21 (42)
T ss_pred cCcccCCCCcchhhCC
Confidence 4999999999999999
No 173
>smart00343 ZnF_C2HC zinc finger.
Probab=96.73 E-value=0.00061 Score=41.08 Aligned_cols=15 Identities=67% Similarity=1.688 Sum_probs=14.7
Q ss_pred cccCCCCCcccCCCC
Q 011113 478 CFNCGKSGHRASECP 492 (493)
Q Consensus 478 c~~c~~~gh~~~~c~ 492 (493)
||+|++.||++++||
T Consensus 2 C~~CG~~GH~~~~C~ 16 (26)
T smart00343 2 CYNCGKEGHIARDCP 16 (26)
T ss_pred CccCCCCCcchhhCC
Confidence 999999999999998
No 174
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=96.63 E-value=0.019 Score=55.94 Aligned_cols=11 Identities=0% Similarity=0.320 Sum_probs=4.7
Q ss_pred HHHHHHHHHhC
Q 011113 197 RTVRSLERDVG 207 (493)
Q Consensus 197 ~~~~~l~~~~~ 207 (493)
..++.|++.+.
T Consensus 165 ~lfe~i~~kl~ 175 (465)
T KOG3973|consen 165 KLFETIRQKLD 175 (465)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 175
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=96.58 E-value=0.00078 Score=63.95 Aligned_cols=16 Identities=56% Similarity=1.479 Sum_probs=15.4
Q ss_pred cccCCCCCcccCCCCC
Q 011113 478 CFNCGKSGHRASECPN 493 (493)
Q Consensus 478 c~~c~~~gh~~~~c~~ 493 (493)
||+||++|||+.|||.
T Consensus 163 cyrcGkeghwskEcP~ 178 (346)
T KOG0109|consen 163 CYRCGKEGHWSKECPV 178 (346)
T ss_pred heeccccccccccCCc
Confidence 9999999999999994
No 176
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=96.55 E-value=0.0011 Score=42.38 Aligned_cols=16 Identities=56% Similarity=0.968 Sum_probs=11.4
Q ss_pred ccccCCCCCcccCCCC
Q 011113 477 ACFNCGKSGHRASECP 492 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~ 492 (493)
-|++|++-.|||+||-
T Consensus 4 ~CprC~kg~Hwa~~C~ 19 (36)
T PF14787_consen 4 LCPRCGKGFHWASECR 19 (36)
T ss_dssp C-TTTSSSCS-TTT--
T ss_pred cCcccCCCcchhhhhh
Confidence 4999999999999993
No 177
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.54 E-value=0.0086 Score=58.16 Aligned_cols=79 Identities=22% Similarity=0.384 Sum_probs=59.6
Q ss_pred HHHhcccCCCEEEEEecccccccCCCCC--------ccEEEeCCCCCChhHHHHHhhccCCCCCc-ceEEEec-C--hhh
Q 011113 128 RTLNGFRQGKFTVLVATDVAARGLDIPN--------VDLIIHYELPNDPETFVHRSGRTGRAGKE-GTAILMF-T--SSQ 195 (493)
Q Consensus 128 ~~~~~F~~g~~~iLVaT~~~~~Gidip~--------v~~VI~~~~p~~~~~y~qr~GR~gR~g~~-g~~i~l~-~--~~e 195 (493)
...+.|.+|+..|+|.|++++.||.+.. -.+-|...+||+.+..+|..||+.|.++. ...|.++ + +-|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 5567999999999999999999998853 23567789999999999999999998853 3334433 3 346
Q ss_pred HHHHHHHHHHh
Q 011113 196 RRTVRSLERDV 206 (493)
Q Consensus 196 ~~~~~~l~~~~ 206 (493)
+++...+.+.+
T Consensus 132 ~Rfas~va~rL 142 (278)
T PF13871_consen 132 RRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHH
Confidence 65555555544
No 178
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.43 E-value=0.011 Score=60.82 Aligned_cols=119 Identities=13% Similarity=0.159 Sum_probs=78.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-------ccccCCCCCc
Q 011113 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-------AARGLDIPNV 156 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-------~~~Gidip~v 156 (493)
.++||.|||++.+-+++...++ .+.+...-|+|+-..++.++.. .-+|+|||+- -..+.|+.++
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs----~PDIVIATPGRlIDHlrNs~sf~ldsi 328 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS----RPDIVIATPGRLIDHLRNSPSFNLDSI 328 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh----CCCEEEecchhHHHHhccCCCccccce
Confidence 4899999999998877766543 3667778899999999999877 6689999982 2346667777
Q ss_pred cEEEeCCCCC--------ChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCCCH
Q 011113 157 DLIIHYELPN--------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV 218 (493)
Q Consensus 157 ~~VI~~~~p~--------~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~ 218 (493)
.++|.-.... ....+++.+- +....+|++.+....++.|.+.--.++..+.+.+.
T Consensus 329 EVLvlDEADRMLeegFademnEii~lcp-------k~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~ 391 (691)
T KOG0338|consen 329 EVLVLDEADRMLEEGFADEMNEIIRLCP-------KNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPN 391 (691)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHhcc-------ccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCc
Confidence 7666432211 2222333332 22445677777777777777766666655544433
No 179
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.33 E-value=0.018 Score=63.76 Aligned_cols=89 Identities=20% Similarity=0.269 Sum_probs=71.0
Q ss_pred ccHHHHHHHHH-HHHcCCCeEEEEeCChHHHHHHHHHHHc--cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccccc
Q 011113 72 TSKRTILSDLI-TVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (493)
Q Consensus 72 ~~k~~~l~~ll-~~~~~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~ 148 (493)
.-|..+...++ ..+..+.++||.+||++.+.++++.|++ ...+..+||+++..+|.+++.++.+++.+|+|+|..+.
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal 252 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL 252 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh
Confidence 45655554443 3344567999999999999999999986 45788999999999999999999999999999998544
Q ss_pred ccCCCCCccEEEe
Q 011113 149 RGLDIPNVDLIIH 161 (493)
Q Consensus 149 ~Gidip~v~~VI~ 161 (493)
. +.+.++.+||.
T Consensus 253 ~-~p~~~l~liVv 264 (679)
T PRK05580 253 F-LPFKNLGLIIV 264 (679)
T ss_pred c-ccccCCCEEEE
Confidence 3 56778888774
No 180
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.32 E-value=0.015 Score=64.51 Aligned_cols=90 Identities=17% Similarity=0.254 Sum_probs=71.8
Q ss_pred ccHHH-HHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011113 72 TSKRT-ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 72 ~~k~~-~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
.-|.. .+..++.....+.+++|.+||+..|.++++.+.+ .+.+..+||+++..+|.++++.+.+|+.+|+|+|.
T Consensus 293 SGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~ 372 (681)
T PRK10917 293 SGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTH 372 (681)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchH
Confidence 34543 3334444555677999999999999999888774 36789999999999999999999999999999997
Q ss_pred c-ccccCCCCCccEEEe
Q 011113 146 V-AARGLDIPNVDLIIH 161 (493)
Q Consensus 146 ~-~~~Gidip~v~~VI~ 161 (493)
. +...+.+.++.+||.
T Consensus 373 ~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 373 ALIQDDVEFHNLGLVII 389 (681)
T ss_pred HHhcccchhcccceEEE
Confidence 4 444567888998874
No 181
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.22 E-value=0.022 Score=60.87 Aligned_cols=89 Identities=20% Similarity=0.259 Sum_probs=70.8
Q ss_pred ccHHHHHHHHHH-HHcCCCeEEEEeCChHHHHHHHHHHHc--cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccccc
Q 011113 72 TSKRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (493)
Q Consensus 72 ~~k~~~l~~ll~-~~~~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~ 148 (493)
.-|.++...++. .+..+.++||.+|++..+.++++.|++ ...+..+|++++..+|.++..+..+++.+|+|+|..+.
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 345555444443 334567999999999999999999986 35688999999999999999999999999999997654
Q ss_pred ccCCCCCccEEEe
Q 011113 149 RGLDIPNVDLIIH 161 (493)
Q Consensus 149 ~Gidip~v~~VI~ 161 (493)
. +.+.++.+||.
T Consensus 88 f-~p~~~l~lIIV 99 (505)
T TIGR00595 88 F-LPFKNLGLIIV 99 (505)
T ss_pred c-CcccCCCEEEE
Confidence 3 56778888774
No 182
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.14 E-value=0.16 Score=56.01 Aligned_cols=110 Identities=19% Similarity=0.233 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCC
Q 011113 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (493)
Q Consensus 75 ~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi 153 (493)
......|+..+..+.++-||+.|...++.+++.... ...+..+++.-+..+- +.+ ++++|+|=|+++..|+++
T Consensus 269 ~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~Sf 342 (824)
T PF02399_consen 269 TTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLSF 342 (824)
T ss_pred hhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEecc
Confidence 345555666666778888999999999999888876 5667777776554422 233 368999999999999999
Q ss_pred CCccE--EEeCCCC----CChhHHHHHhhccCCCCCcceEEEec
Q 011113 154 PNVDL--IIHYELP----NDPETFVHRSGRTGRAGKEGTAILMF 191 (493)
Q Consensus 154 p~v~~--VI~~~~p----~~~~~y~qr~GR~gR~g~~g~~i~l~ 191 (493)
.+..+ |.-|=-| .+..+..|++||+-... ....++++
T Consensus 343 ~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~ 385 (824)
T PF02399_consen 343 EEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYI 385 (824)
T ss_pred chhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEE
Confidence 75542 3323112 35667899999975443 33344433
No 183
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.13 E-value=0.028 Score=61.75 Aligned_cols=91 Identities=19% Similarity=0.277 Sum_probs=75.4
Q ss_pred ccHHHHHHHHHHHH-cCCCeEEEEeCChHHHHHHHHHHHccC---ceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc
Q 011113 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTSII---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (493)
Q Consensus 72 ~~k~~~l~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~~~---~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~ 147 (493)
+.|.+++.+++... ..++++||.++....+.++.+.|+..+ .+..+|+++++.+|.+...+.++|+.+|+|.|-.+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 46777776666543 457799999999999999999999644 58899999999999999999999999999999865
Q ss_pred cccCCCCCccEEEeCC
Q 011113 148 ARGLDIPNVDLIIHYE 163 (493)
Q Consensus 148 ~~Gidip~v~~VI~~~ 163 (493)
.- .-+++..+||..+
T Consensus 251 vF-aP~~~LgLIIvdE 265 (665)
T PRK14873 251 VF-APVEDLGLVAIWD 265 (665)
T ss_pred EE-eccCCCCEEEEEc
Confidence 43 6677888888544
No 184
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.94 E-value=0.051 Score=58.13 Aligned_cols=118 Identities=16% Similarity=0.258 Sum_probs=89.6
Q ss_pred cHHHHHHHHHHHH--cCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccC--CCEEE-EEeccc
Q 011113 73 SKRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ--GKFTV-LVATDV 146 (493)
Q Consensus 73 ~k~~~l~~ll~~~--~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~--g~~~i-LVaT~~ 146 (493)
-|+..+..+++.. ....+++|...-......+...|.+ +.....+||.+...+|+.+++.|.. +..+| |++-.+
T Consensus 729 ~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtA 808 (901)
T KOG4439|consen 729 CKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTA 808 (901)
T ss_pred hHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEcc
Confidence 3444444444332 3456777776666666666777775 6778889999999999999999964 43454 555577
Q ss_pred ccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEe
Q 011113 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (493)
Q Consensus 147 ~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l 190 (493)
-+.|||+-..+|+|..|+-|++.--.|.+-|.-|.|.+-.+++.
T Consensus 809 GGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 809 GGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred CcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 78899999999999999999999999999999999977665553
No 185
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.81 E-value=0.031 Score=61.48 Aligned_cols=90 Identities=17% Similarity=0.256 Sum_probs=71.4
Q ss_pred ccHHH-HHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011113 72 TSKRT-ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 72 ~~k~~-~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
.-|.. .+..++..+..+.+++|.+||+..|.++++.+.+ ++.+..+||+++..+|..+++.+.+++.+|+|+|.
T Consensus 267 SGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~ 346 (630)
T TIGR00643 267 SGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTH 346 (630)
T ss_pred CcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecH
Confidence 34543 3334455555677999999999999999888764 37889999999999999999999999999999997
Q ss_pred cc-cccCCCCCccEEEe
Q 011113 146 VA-ARGLDIPNVDLIIH 161 (493)
Q Consensus 146 ~~-~~Gidip~v~~VI~ 161 (493)
.+ ...+.+.++.+||.
T Consensus 347 ~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 347 ALIQEKVEFKRLALVII 363 (630)
T ss_pred HHHhccccccccceEEE
Confidence 54 34567788888774
No 186
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.68 E-value=0.044 Score=62.49 Aligned_cols=90 Identities=17% Similarity=0.230 Sum_probs=70.7
Q ss_pred ccHHHHH-HHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011113 72 TSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 72 ~~k~~~l-~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
.-|..+. ..++.....+.+++|.+||+..|.+.++.+.+ .+.+..+++.++..++.++++.+++|+.+|+|+|.
T Consensus 483 sGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp 562 (926)
T TIGR00580 483 FGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTH 562 (926)
T ss_pred ccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchH
Confidence 3454433 33344444568999999999999999998874 24678899999999999999999999999999997
Q ss_pred -cccccCCCCCccEEEe
Q 011113 146 -VAARGLDIPNVDLIIH 161 (493)
Q Consensus 146 -~~~~Gidip~v~~VI~ 161 (493)
.+...+.+.++.+||.
T Consensus 563 ~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 563 KLLQKDVKFKDLGLLII 579 (926)
T ss_pred HHhhCCCCcccCCEEEe
Confidence 4445677888888774
No 187
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=95.57 E-value=0.0047 Score=55.68 Aligned_cols=16 Identities=56% Similarity=1.545 Sum_probs=15.2
Q ss_pred ccccCCCCCcccCCCC
Q 011113 477 ACFNCGKSGHRASECP 492 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~ 492 (493)
.||||||.||.++|||
T Consensus 62 ~C~nCg~~GH~~~DCP 77 (190)
T COG5082 62 VCFNCGQNGHLRRDCP 77 (190)
T ss_pred ccchhcccCcccccCC
Confidence 3999999999999999
No 188
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.38 E-value=0.19 Score=50.60 Aligned_cols=70 Identities=14% Similarity=0.224 Sum_probs=47.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc------ccccCCCCCcc
Q 011113 88 GGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNVD 157 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~------~~~Gidip~v~ 157 (493)
...+||+++|++.+.++.....+ ++...+++|+-...++.+-+++ ...|+|||+- ..--||+..++
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkr----gveiiiatPgrlndL~~~n~i~l~siT 369 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKR----GVEIIIATPGRLNDLQMDNVINLASIT 369 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhc----CceEEeeCCchHhhhhhcCeeeeeeeE
Confidence 35789999999998887665542 5677778887655555444443 6789999982 23346666677
Q ss_pred EEEe
Q 011113 158 LIIH 161 (493)
Q Consensus 158 ~VI~ 161 (493)
++|.
T Consensus 370 YlVl 373 (629)
T KOG0336|consen 370 YLVL 373 (629)
T ss_pred EEEe
Confidence 6663
No 189
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=95.31 E-value=0.038 Score=58.44 Aligned_cols=69 Identities=19% Similarity=0.253 Sum_probs=53.4
Q ss_pred CeEEEEeCChHHHHHHHHHHHc------cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc-----ccc-ccCCCCCc
Q 011113 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA-RGLDIPNV 156 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~-~Gidip~v 156 (493)
.++||.|||++.|.++++.++. .+.+..++|+.+...+...++ ...+|+|+|+ .+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 3799999999999999887763 356888999998877665555 3678999995 233 35788889
Q ss_pred cEEEe
Q 011113 157 DLIIH 161 (493)
Q Consensus 157 ~~VI~ 161 (493)
.+||.
T Consensus 149 ~~lVi 153 (460)
T PRK11776 149 NTLVL 153 (460)
T ss_pred CEEEE
Confidence 98874
No 190
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=95.05 E-value=0.013 Score=51.92 Aligned_cols=18 Identities=44% Similarity=1.411 Sum_probs=15.3
Q ss_pred CccccCCCCCcccCCCCC
Q 011113 476 GACFNCGKSGHRASECPN 493 (493)
Q Consensus 476 ~~c~~c~~~gh~~~~c~~ 493 (493)
..||+|++.||+++|||.
T Consensus 130 ~~C~~Cg~~gH~~~dCp~ 147 (148)
T PTZ00368 130 KTCYNCGQTGHLSRDCPD 147 (148)
T ss_pred CccccCCCcCcccccCCC
Confidence 469999999999999984
No 191
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=95.03 E-value=0.0093 Score=53.82 Aligned_cols=17 Identities=47% Similarity=1.425 Sum_probs=15.5
Q ss_pred CccccCCCCCcccCCC-C
Q 011113 476 GACFNCGKSGHRASEC-P 492 (493)
Q Consensus 476 ~~c~~c~~~gh~~~~c-~ 492 (493)
.-||+||+.||+++|| |
T Consensus 98 ~~C~~Cg~~GH~~~dC~P 115 (190)
T COG5082 98 KKCYNCGETGHLSRDCNP 115 (190)
T ss_pred cccccccccCccccccCc
Confidence 3599999999999999 5
No 192
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=95.01 E-value=0.13 Score=54.00 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=53.0
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc------ccccCCCCCcc
Q 011113 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNVD 157 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~------~~~Gidip~v~ 157 (493)
.++||.++|++.|.++++.+.. .+.+..++|+.+...+..++.. ..+|||+|+- ....+++.++.
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~----~~~IlV~Tp~rl~~~~~~~~~~~~~v~ 149 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSE----NQDIVVATPGRLLQYIKEENFDCRAVE 149 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcC----CCCEEEEChHHHHHHHHcCCcCcccCC
Confidence 5899999999999998876653 4678899999988877666643 5689999972 23456778888
Q ss_pred EEEe
Q 011113 158 LIIH 161 (493)
Q Consensus 158 ~VI~ 161 (493)
+||.
T Consensus 150 ~lVi 153 (434)
T PRK11192 150 TLIL 153 (434)
T ss_pred EEEE
Confidence 8773
No 193
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=0.1 Score=54.19 Aligned_cols=182 Identities=20% Similarity=0.267 Sum_probs=115.8
Q ss_pred CcEEEEeccCChHHHHHHHHhcCCCc-eEEecccccc----ccccceEEEE--EEc-----CcccHHHHH-HHHHHHHcC
Q 011113 21 RQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDE----KLAEGIKLYA--IST-----TATSKRTIL-SDLITVYAK 87 (493)
Q Consensus 21 ~q~ll~SAT~p~~v~~l~~~~l~~~~-~i~~~~~~~~----~~~~~i~~~~--~~~-----~~~~k~~~l-~~ll~~~~~ 87 (493)
+|||+||+-..+.+..+...++.|-. .|........ .....+.|.+ +.+ ....+.... ..++-.+.+
T Consensus 470 rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k 549 (698)
T KOG2340|consen 470 RQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIK 549 (698)
T ss_pred HHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHhhchhhcc
Confidence 59999999999999998888876532 2221111110 0001111111 111 111222211 122222211
Q ss_pred --CCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc--cccCCCCCccEEEeC
Q 011113 88 --GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA--ARGLDIPNVDLIIHY 162 (493)
Q Consensus 88 --~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~--~~Gidip~v~~VI~~ 162 (493)
..-+|||.|+--+-..+-.++.+ .+....+|--.++..-.++-+-|-.|..+||+-|.-+ -+--+|..|.-||.|
T Consensus 550 ~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfY 629 (698)
T KOG2340|consen 550 RTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFY 629 (698)
T ss_pred cccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEe
Confidence 24679999999988888888875 5555556655566666777788999999999999743 456789999999999
Q ss_pred CCCCChhHH---HHHhhccCCCC----CcceEEEecChhhHHHHHHH
Q 011113 163 ELPNDPETF---VHRSGRTGRAG----KEGTAILMFTSSQRRTVRSL 202 (493)
Q Consensus 163 ~~p~~~~~y---~qr~GR~gR~g----~~g~~i~l~~~~e~~~~~~l 202 (493)
.+|..+.-| +.+.+|+.-.| ..-.|.++|+..+.-.++.+
T Consensus 630 qpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 630 QPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred cCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 999988665 67777775433 34678889998876555443
No 194
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=94.88 E-value=0.11 Score=45.96 Aligned_cols=18 Identities=56% Similarity=1.400 Sum_probs=15.9
Q ss_pred CccccCCCCCcccCCCCC
Q 011113 476 GACFNCGKSGHRASECPN 493 (493)
Q Consensus 476 ~~c~~c~~~gh~~~~c~~ 493 (493)
..||+|++.||+++|||+
T Consensus 104 ~~C~~Cg~~gH~~~~C~~ 121 (148)
T PTZ00368 104 RACYNCGGEGHISRDCPN 121 (148)
T ss_pred hhhcccCcCCcchhcCCC
Confidence 369999999999999985
No 195
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.57 E-value=0.12 Score=56.86 Aligned_cols=92 Identities=23% Similarity=0.280 Sum_probs=75.8
Q ss_pred cCcccHHHHHHHHHHH-HcCCCeEEEEeCChHHHHHHHHHHHc--cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011113 69 TTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 69 ~~~~~k~~~l~~ll~~-~~~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
+.-+.|.++..+++.. +..++++||.+|-.....++...|.. +..+..+|++|++.+|..+..+.++|+.+|+|.|-
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR 304 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR 304 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEec
Confidence 4455677777777654 35677999999999999999999985 56789999999999999999999999999999997
Q ss_pred cccccCCCCCccEEEe
Q 011113 146 VAARGLDIPNVDLIIH 161 (493)
Q Consensus 146 ~~~~Gidip~v~~VI~ 161 (493)
.+- -.-++++-+||.
T Consensus 305 SAl-F~Pf~~LGLIIv 319 (730)
T COG1198 305 SAL-FLPFKNLGLIIV 319 (730)
T ss_pred hhh-cCchhhccEEEE
Confidence 543 356778888773
No 196
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.56 E-value=0.21 Score=43.76 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHhcccCCC-EEEEEecccccccCCCCCc--cEEEeCCCCC
Q 011113 120 DISQHQRERTLNGFRQGK-FTVLVATDVAARGLDIPNV--DLIIHYELPN 166 (493)
Q Consensus 120 ~~~~~~r~~~~~~F~~g~-~~iLVaT~~~~~Gidip~v--~~VI~~~~p~ 166 (493)
.....+...+++.|++.. ..||++|.-+++|||+|+- +.||...+|.
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 344556788888898654 3799999889999999974 5677777663
No 197
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=94.55 E-value=0.27 Score=54.09 Aligned_cols=70 Identities=23% Similarity=0.240 Sum_probs=52.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc------cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc-----cccc-cCCCCC
Q 011113 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPN 155 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~-Gidip~ 155 (493)
..++||.|||++.|.++++.+.. .+.+..+|++.+...+...++. ..+|||+|+ .+.+ .+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~----~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ----GPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcchhh
Confidence 45899999999999999887653 3678889999887766555532 578999996 3333 477888
Q ss_pred ccEEEe
Q 011113 156 VDLIIH 161 (493)
Q Consensus 156 v~~VI~ 161 (493)
+.+||.
T Consensus 150 l~~lVl 155 (629)
T PRK11634 150 LSGLVL 155 (629)
T ss_pred ceEEEe
Confidence 888773
No 198
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.54 E-value=0.12 Score=60.38 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=69.3
Q ss_pred CcccHHHHHH-HHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEe
Q 011113 70 TATSKRTILS-DLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVA 143 (493)
Q Consensus 70 ~~~~k~~~l~-~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVa 143 (493)
.-.-|..+.. ........+.+++|.+||+..|.+++..+.+ .+.+..+++..+..++..+++.++++..+|||+
T Consensus 630 TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVg 709 (1147)
T PRK10689 630 VGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIG 709 (1147)
T ss_pred CCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 3345654322 2222334568999999999999999998874 246778999999999999999999999999999
Q ss_pred cc-cccccCCCCCccEEEe
Q 011113 144 TD-VAARGLDIPNVDLIIH 161 (493)
Q Consensus 144 T~-~~~~Gidip~v~~VI~ 161 (493)
|. .+...+.+.++.+||.
T Consensus 710 Tp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 710 THKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CHHHHhCCCCHhhCCEEEE
Confidence 96 4444566778888773
No 199
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.38 E-value=0.08 Score=59.14 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=51.9
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHcc------CceEE-EeCCCCHHHHHHHHhcccCCCEEEEEeccc
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTSI------IASEA-LHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~------~~~~~-lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (493)
+++++++.+||...+.++++.|.+. +.+.. +|+.|+.++++.++++|.+|+++|||+|..
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 5689999999999999999988741 33333 999999999999999999999999999974
No 200
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=94.10 E-value=0.033 Score=65.55 Aligned_cols=94 Identities=21% Similarity=0.379 Sum_probs=77.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHc--cCceEEEeCCCC-----------HHHHHHHHhcccCCCEEEEEecccccccCCCCC
Q 011113 89 GKTIVFTQTKRDADEVSLALTS--IIASEALHGDIS-----------QHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~-----------~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~ 155 (493)
-..|+||+.+..+..+.+.+.+ ...+..+.|.+. +..+.+++..|....+++|++|.++..|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 3568999999999988888874 233333444322 234678999999999999999999999999999
Q ss_pred ccEEEeCCCCCChhHHHHHhhccCCCC
Q 011113 156 VDLIIHYELPNDPETFVHRSGRTGRAG 182 (493)
Q Consensus 156 v~~VI~~~~p~~~~~y~qr~GR~gR~g 182 (493)
++.|+.++.|.....|+|..||+-++.
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999986643
No 201
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.00 E-value=0.22 Score=43.64 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=31.2
Q ss_pred HHHHHHhcccCCCE---EEEEeccc--ccccCCCCC--ccEEEeCCCCC
Q 011113 125 QRERTLNGFRQGKF---TVLVATDV--AARGLDIPN--VDLIIHYELPN 166 (493)
Q Consensus 125 ~r~~~~~~F~~g~~---~iLVaT~~--~~~Gidip~--v~~VI~~~~p~ 166 (493)
+..++++.|++..- .||+++.- +++|||+|+ ++.||...+|.
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 44677888876433 58888876 999999987 45788777663
No 202
>PRK14701 reverse gyrase; Provisional
Probab=93.91 E-value=0.19 Score=60.66 Aligned_cols=60 Identities=22% Similarity=0.316 Sum_probs=52.9
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-------cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTS-------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (493)
++.++||.+||++.+.+++..|.. .+.+..+||+++..++.++++.++++..+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 456899999999999999988875 245788999999999999999999999999999984
No 203
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=93.33 E-value=1.1 Score=45.07 Aligned_cols=113 Identities=16% Similarity=0.224 Sum_probs=70.2
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-----------CceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc----------
Q 011113 88 GGKTIVFTQTKRDADEVSLALTSI-----------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDV---------- 146 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~-----------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~---------- 146 (493)
+.-.||.|++++.|.+.+..+... +.+..--|+++-.++..++.+ -+.|+|||+-
T Consensus 246 GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~----GvHivVATPGRL~DmL~KK~ 321 (610)
T KOG0341|consen 246 GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRR----GVHIVVATPGRLMDMLAKKI 321 (610)
T ss_pred CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhc----CeeEEEcCcchHHHHHHHhh
Confidence 456799999999998877766532 234445688998888887766 6889999981
Q ss_pred ----ccccCCCCCccEEEeCCCCCChhHHH-HHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCcee
Q 011113 147 ----AARGLDIPNVDLIIHYELPNDPETFV-HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212 (493)
Q Consensus 147 ----~~~Gidip~v~~VI~~~~p~~~~~y~-qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~ 212 (493)
+-|-+-+...+-.|+.++-.++.+.. +-.| -...+|++.+....++.+.+..-.++..
T Consensus 322 ~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~--------QRQTLLFSATMP~KIQ~FAkSALVKPvt 384 (610)
T KOG0341|consen 322 MSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKG--------QRQTLLFSATMPKKIQNFAKSALVKPVT 384 (610)
T ss_pred ccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhh--------hhheeeeeccccHHHHHHHHhhcccceE
Confidence 22334445555666777666654432 2221 1234556655555666665555444433
No 204
>PF15288 zf-CCHC_6: Zinc knuckle
Probab=93.17 E-value=0.043 Score=36.33 Aligned_cols=16 Identities=50% Similarity=1.173 Sum_probs=14.3
Q ss_pred ccccCCCCCccc--CCCC
Q 011113 477 ACFNCGKSGHRA--SECP 492 (493)
Q Consensus 477 ~c~~c~~~gh~~--~~c~ 492 (493)
-|-+||+-||++ +.||
T Consensus 3 kC~~CG~~GH~~t~k~CP 20 (40)
T PF15288_consen 3 KCKNCGAFGHMRTNKRCP 20 (40)
T ss_pred cccccccccccccCccCC
Confidence 399999999998 7798
No 205
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=92.94 E-value=0.33 Score=52.75 Aligned_cols=105 Identities=21% Similarity=0.306 Sum_probs=85.8
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-cC------------------ceEEEeCCCCHHHHHHHHhcccCC---CEEEEEecc
Q 011113 88 GGKTIVFTQTKRDADEVSLALTS-II------------------ASEALHGDISQHQRERTLNGFRQG---KFTVLVATD 145 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-~~------------------~~~~lhg~~~~~~r~~~~~~F~~g---~~~iLVaT~ 145 (493)
+.++|||.......+.|.+.|.+ .+ .-.-+.|-.+..+|++.+++|.+. ..-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 56899999998888888888864 21 223567888899999999999863 235789999
Q ss_pred cccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecC
Q 011113 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 192 (493)
Q Consensus 146 ~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~ 192 (493)
.-..||++-..+-+|.+|..|++.--.|.+-|+-|.|.+-.|+++-.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRl 845 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRL 845 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEee
Confidence 99999999888899999999999988999999999997777777643
No 206
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=0.042 Score=53.50 Aligned_cols=18 Identities=39% Similarity=1.324 Sum_probs=16.2
Q ss_pred CccccCCCCCcccCCCCC
Q 011113 476 GACFNCGKSGHRASECPN 493 (493)
Q Consensus 476 ~~c~~c~~~gh~~~~c~~ 493 (493)
..||+||+.|||++|||+
T Consensus 144 ~~Cy~Cg~~GH~s~~C~~ 161 (261)
T KOG4400|consen 144 AKCYSCGEQGHISDDCPE 161 (261)
T ss_pred CccCCCCcCCcchhhCCC
Confidence 459999999999999993
No 207
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=92.86 E-value=0.037 Score=38.89 Aligned_cols=16 Identities=56% Similarity=1.547 Sum_probs=15.2
Q ss_pred cccCCCCCcccCCCCC
Q 011113 478 CFNCGKSGHRASECPN 493 (493)
Q Consensus 478 c~~c~~~gh~~~~c~~ 493 (493)
||+||.-||..++||.
T Consensus 34 C~~C~~~gH~~~~C~k 49 (49)
T PF14392_consen 34 CFHCGRIGHSDKECPK 49 (49)
T ss_pred hcCCCCcCcCHhHcCC
Confidence 9999999999999983
No 208
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=92.55 E-value=0.64 Score=52.30 Aligned_cols=108 Identities=17% Similarity=0.283 Sum_probs=67.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccccccc-----------CC
Q 011113 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG-----------LD 152 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~G-----------id 152 (493)
.-+||.|+|++.+.+|.+.+.. .+.+++.+|+...+++... .++| ..|+|||+ .|- .+
T Consensus 439 Pi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiae---lkRg-~eIvV~tp--GRmiD~l~~n~grvtn 512 (997)
T KOG0334|consen 439 PIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAE---LKRG-AEIVVCTP--GRMIDILCANSGRVTN 512 (997)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHH---HhcC-CceEEecc--chhhhhHhhcCCcccc
Confidence 4579999999999999988764 4678888898777666544 4556 78999997 223 33
Q ss_pred CCCccEEEe------CC--CCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCC
Q 011113 153 IPNVDLIIH------YE--LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (493)
Q Consensus 153 ip~v~~VI~------~~--~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~ 209 (493)
+-.+++|+. +| +-......+|.+ |+-|. .++++.+....+..+.+..-.+
T Consensus 513 lrR~t~lv~deaDrmfdmgfePq~~~Ii~nl-rpdrQ------tvlfSatfpr~m~~la~~vl~~ 570 (997)
T KOG0334|consen 513 LRRVTYLVLDEADRMFDMGFEPQITRILQNL-RPDRQ------TVLFSATFPRSMEALARKVLKK 570 (997)
T ss_pred ccccceeeechhhhhheeccCcccchHHhhc-chhhh------hhhhhhhhhHHHHHHHHHhhcC
Confidence 444555552 22 222333478888 44442 4455555555566665554333
No 209
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=92.39 E-value=0.22 Score=52.06 Aligned_cols=52 Identities=27% Similarity=0.387 Sum_probs=46.8
Q ss_pred eEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011113 90 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
-.|||++|++.|.++...|.. .+.+..+.|+|+.+.+++++++ .-+|+|||+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 389999999999999999863 5789999999999999999988 567999998
No 210
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=92.25 E-value=0.29 Score=57.43 Aligned_cols=60 Identities=18% Similarity=0.383 Sum_probs=50.7
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHcc-----Cc---eEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTSI-----IA---SEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~-----~~---~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (493)
.+.++||.+||++.|.++++.+... +. +..+||+++..++...++.++++..+|||+|+-
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 4578999999999999998888742 22 235899999999999999999988999999983
No 211
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=91.61 E-value=0.69 Score=50.03 Aligned_cols=86 Identities=19% Similarity=0.290 Sum_probs=71.8
Q ss_pred HHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-ccc
Q 011113 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AAR 149 (493)
Q Consensus 76 ~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-~~~ 149 (493)
-++..++..+..+.++...+||--.|++.+..+.+ ++.+..+.|.+...+|++++++..+|+++|+|.|-+ +..
T Consensus 299 VA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd 378 (677)
T COG1200 299 VALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD 378 (677)
T ss_pred HHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc
Confidence 34445556666788999999999888888877764 467999999999999999999999999999999976 456
Q ss_pred cCCCCCccEEEe
Q 011113 150 GLDIPNVDLIIH 161 (493)
Q Consensus 150 Gidip~v~~VI~ 161 (493)
.+++.+.-+||.
T Consensus 379 ~V~F~~LgLVIi 390 (677)
T COG1200 379 KVEFHNLGLVII 390 (677)
T ss_pred ceeecceeEEEE
Confidence 788888888875
No 212
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.43 E-value=0.075 Score=50.78 Aligned_cols=17 Identities=41% Similarity=1.324 Sum_probs=15.8
Q ss_pred ccccCCCCCcccCCCCC
Q 011113 477 ACFNCGKSGHRASECPN 493 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~~ 493 (493)
-||+||+.|||-..||.
T Consensus 178 ~CyRCGqkgHwIqnCpT 194 (427)
T COG5222 178 VCYRCGQKGHWIQNCPT 194 (427)
T ss_pred eEEecCCCCchhhcCCC
Confidence 59999999999999994
No 213
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=91.22 E-value=0.8 Score=52.49 Aligned_cols=89 Identities=17% Similarity=0.287 Sum_probs=72.3
Q ss_pred cHHHH-HHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHcc-----CceEEEeCCCCHHHHHHHHhcccCCCEEEEEec-c
Q 011113 73 SKRTI-LSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVAT-D 145 (493)
Q Consensus 73 ~k~~~-l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT-~ 145 (493)
-|.++ +....+....+++|.|.+||.-.|++-++.+++. +.+..+..=.+.+++..+++..++|+++|||.| .
T Consensus 627 GKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr 706 (1139)
T COG1197 627 GKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR 706 (1139)
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH
Confidence 34443 3444455567789999999999999999999853 356778888899999999999999999999999 4
Q ss_pred cccccCCCCCccEEEe
Q 011113 146 VAARGLDIPNVDLIIH 161 (493)
Q Consensus 146 ~~~~Gidip~v~~VI~ 161 (493)
++...|-+.++-+||.
T Consensus 707 LL~kdv~FkdLGLlII 722 (1139)
T COG1197 707 LLSKDVKFKDLGLLII 722 (1139)
T ss_pred hhCCCcEEecCCeEEE
Confidence 7788888888888874
No 214
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.50 E-value=0.89 Score=48.26 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=53.5
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (493)
....+||.+|+++.+.+....|.. ++.+..+++..+..++..++..+.++..+||++|+-
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPE 110 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 457899999999999988888875 788999999999999999999999999999999973
No 215
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=90.26 E-value=3.6 Score=43.04 Aligned_cols=69 Identities=29% Similarity=0.358 Sum_probs=56.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc--cC---ceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc------cccccCCCCCc
Q 011113 88 GGKTIVFTQTKRDADEVSLALTS--II---ASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 156 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~--~~---~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidip~v 156 (493)
++++|+..||+-.+.+-+..+.+ ++ .+..|.|..++++|...... .+|+|||+ +.+-=||+.++
T Consensus 58 ~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~-----~kVfvaTPQvveNDl~~Grid~~dv 132 (542)
T COG1111 58 GGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK-----KKVFVATPQVVENDLKAGRIDLDDV 132 (542)
T ss_pred CCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh-----CCEEEeccHHHHhHHhcCccChHHc
Confidence 34899999999999999988876 33 47799999999999887764 57999997 34445999999
Q ss_pred cEEEe
Q 011113 157 DLIIH 161 (493)
Q Consensus 157 ~~VI~ 161 (493)
.++|.
T Consensus 133 ~~lif 137 (542)
T COG1111 133 SLLIF 137 (542)
T ss_pred eEEEe
Confidence 99884
No 216
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=90.10 E-value=2.7 Score=38.65 Aligned_cols=69 Identities=19% Similarity=0.258 Sum_probs=49.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-----c-cccCCCCCc
Q 011113 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-ARGLDIPNV 156 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~-~~Gidip~v 156 (493)
..++||.+++++.+.+.+..+.. .+.+..+|++.+..+....++ ....|+|+|.. + ..-.+++++
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l 144 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhC
Confidence 45899999999999988777653 356788999988776655554 46789999952 2 222566777
Q ss_pred cEEE
Q 011113 157 DLII 160 (493)
Q Consensus 157 ~~VI 160 (493)
++||
T Consensus 145 ~~lI 148 (203)
T cd00268 145 KYLV 148 (203)
T ss_pred CEEE
Confidence 7766
No 217
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=89.10 E-value=0.13 Score=56.37 Aligned_cols=118 Identities=16% Similarity=0.196 Sum_probs=92.0
Q ss_pred ccHHHHHHHHHHHHc-CC-CeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCC-EE-EEEeccc
Q 011113 72 TSKRTILSDLITVYA-KG-GKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK-FT-VLVATDV 146 (493)
Q Consensus 72 ~~k~~~l~~ll~~~~-~~-~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~-~~-iLVaT~~ 146 (493)
..|...+..+|.... .. .++|||+.-..-+..+...|.. .+....+-|.|+...|.+.+..|..+. .. .|++..+
T Consensus 521 s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slka 600 (674)
T KOG1001|consen 521 SSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKA 600 (674)
T ss_pred hhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHH
Confidence 344444444444221 12 3899999999888888877763 677778889999999999999999543 22 4677888
Q ss_pred ccccCCCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEE
Q 011113 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (493)
Q Consensus 147 ~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~ 189 (493)
...|+++-...||+..|+-|++..-.|.+-|+.|-|.+-.+.+
T Consensus 601 g~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 601 GKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 9999999999999999999999999999999999886554444
No 218
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.04 E-value=2.3 Score=40.43 Aligned_cols=68 Identities=21% Similarity=0.281 Sum_probs=54.4
Q ss_pred eEEEEeCChHHHHHHHHHHHc------cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc------cccccCCCCCcc
Q 011113 90 KTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 157 (493)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidip~v~ 157 (493)
.+||.|.|++.|.++.....+ ..++.++.|+++-..-+++++. ...|+|+|+ +-.+-+++.+|.
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~vk 187 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKNVK 187 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhhcc
Confidence 789999999999999876653 2568899999998888887776 667999998 334678888888
Q ss_pred EEEe
Q 011113 158 LIIH 161 (493)
Q Consensus 158 ~VI~ 161 (493)
+.|.
T Consensus 188 hFvl 191 (387)
T KOG0329|consen 188 HFVL 191 (387)
T ss_pred eeeh
Confidence 7664
No 219
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=87.99 E-value=1.9 Score=47.25 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=53.2
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (493)
..+.+||.+|++..+++....|.. ++.+..+|+.++..++..+++.+..+.++||+.|+-
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe 112 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPE 112 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChh
Confidence 457899999999998888888875 788999999999999999999999999999999863
No 220
>PRK13766 Hef nuclease; Provisional
Probab=87.61 E-value=11 Score=42.62 Aligned_cols=70 Identities=26% Similarity=0.397 Sum_probs=53.3
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHcc--C---ceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc------ccccCCCCC
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTSI--I---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPN 155 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~--~---~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~------~~~Gidip~ 155 (493)
+..++||.|+|+..+++.++.+.+. + .+..++|+.+..+|..+.+. ..|+|+|+- +..-+++.+
T Consensus 57 ~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~-----~~iiv~T~~~l~~~l~~~~~~~~~ 131 (773)
T PRK13766 57 KGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK-----AKVIVATPQVIENDLIAGRISLED 131 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC-----CCEEEECHHHHHHHHHcCCCChhh
Confidence 4689999999999998888887752 2 67789999999888766643 469999962 233466778
Q ss_pred ccEEEe
Q 011113 156 VDLIIH 161 (493)
Q Consensus 156 v~~VI~ 161 (493)
+++||.
T Consensus 132 ~~liVv 137 (773)
T PRK13766 132 VSLLIF 137 (773)
T ss_pred CcEEEE
Confidence 888773
No 221
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=87.45 E-value=1.9 Score=45.02 Aligned_cols=69 Identities=9% Similarity=0.179 Sum_probs=51.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc------ccccCCCCCcc
Q 011113 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNVD 157 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~------~~~Gidip~v~ 157 (493)
.++||.+||++.|.++++.+.. .+.+..++|+.+...+...++ ...+|||+|+- -..-+++.++.
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLE----SGVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEECHHHHHHHHHcCCccccccc
Confidence 5799999999999998776542 467888999887666555443 25689999972 12357788888
Q ss_pred EEEe
Q 011113 158 LIIH 161 (493)
Q Consensus 158 ~VI~ 161 (493)
+||.
T Consensus 160 ~lVi 163 (423)
T PRK04837 160 VVVL 163 (423)
T ss_pred EEEE
Confidence 8774
No 222
>PTZ00110 helicase; Provisional
Probab=87.40 E-value=1.5 Score=47.44 Aligned_cols=69 Identities=13% Similarity=0.193 Sum_probs=51.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc-----cccc-cCCCCCcc
Q 011113 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPNVD 157 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~-Gidip~v~ 157 (493)
..+||.+||++.|.++.+.+.. .+.+..++++.+...+...+.. ..+|||+|+ .+.. -+++..++
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~----~~~IlVaTPgrL~d~l~~~~~~l~~v~ 279 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRR----GVEILIACPGRLIDFLESNVTNLRRVT 279 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHc----CCCEEEECHHHHHHHHHcCCCChhhCc
Confidence 4689999999999999888764 3567888999887665554443 468999996 3333 36678888
Q ss_pred EEEe
Q 011113 158 LIIH 161 (493)
Q Consensus 158 ~VI~ 161 (493)
+||.
T Consensus 280 ~lVi 283 (545)
T PTZ00110 280 YLVL 283 (545)
T ss_pred EEEe
Confidence 7773
No 223
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=87.30 E-value=0.58 Score=41.73 Aligned_cols=16 Identities=38% Similarity=1.259 Sum_probs=14.7
Q ss_pred cccCCCCCcccCCCCC
Q 011113 478 CFNCGKSGHRASECPN 493 (493)
Q Consensus 478 c~~c~~~gh~~~~c~~ 493 (493)
||+||+.|||.+.|-+
T Consensus 103 ~~r~G~rg~~~r~~~~ 118 (195)
T KOG0107|consen 103 CYRCGERGHIGRNCKD 118 (195)
T ss_pred cccCCCcccccccccc
Confidence 9999999999999964
No 224
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=87.24 E-value=2.7 Score=46.13 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=52.5
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
....+||.+|+++.+.+....|.. ++.+..+++.++..++..+++..+.+.+++|++|+
T Consensus 64 ~~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 64 LDGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred cCCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 457899999999999988888875 78889999999999999999999999999999985
No 225
>PRK09401 reverse gyrase; Reviewed
Probab=86.99 E-value=1.8 Score=51.04 Aligned_cols=73 Identities=22% Similarity=0.361 Sum_probs=54.1
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHcc-----Cce--EEEeCCCCHHHHHHHHhcccCCCEEEEEecc-----cccccCCCC
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTSI-----IAS--EALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGLDIP 154 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~-----~~~--~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~Gidip 154 (493)
++.++||.+||++.+.++++.++.. +.+ ...|+.++..++...++.++++..+|+|+|+ .+. .+...
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~ 200 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKK 200 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hcccc
Confidence 4679999999999999999988742 233 3446667788888888999988899999996 222 34444
Q ss_pred CccEEE
Q 011113 155 NVDLII 160 (493)
Q Consensus 155 ~v~~VI 160 (493)
.+++||
T Consensus 201 ~~~~lV 206 (1176)
T PRK09401 201 KFDFVF 206 (1176)
T ss_pred ccCEEE
Confidence 466665
No 226
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=86.31 E-value=5.4 Score=35.19 Aligned_cols=69 Identities=20% Similarity=0.317 Sum_probs=49.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc-----CceEEEeCCCCHH-HHHHHHhcccCCCEEEEEeccc------ccccCCCCCc
Q 011113 89 GKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQH-QRERTLNGFRQGKFTVLVATDV------AARGLDIPNV 156 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~~-----~~~~~lhg~~~~~-~r~~~~~~F~~g~~~iLVaT~~------~~~Gidip~v 156 (493)
.++||.+|+++.++++...+... +.+..+|++.+.. +....+ .+..+|+|+|.. ....+++..+
T Consensus 45 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~~~~~~~~~~~~ 120 (169)
T PF00270_consen 45 ARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDLISNGKINISRL 120 (169)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHHHHTTSSTGTTE
T ss_pred ceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccccCcchhhccccccccccccc
Confidence 49999999999999999888752 4688899998855 444444 446789999972 1223466667
Q ss_pred cEEEe
Q 011113 157 DLIIH 161 (493)
Q Consensus 157 ~~VI~ 161 (493)
++||.
T Consensus 121 ~~iVi 125 (169)
T PF00270_consen 121 SLIVI 125 (169)
T ss_dssp SEEEE
T ss_pred eeecc
Confidence 77663
No 227
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=85.66 E-value=2.1 Score=44.92 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=42.6
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
.+..+||..+|++.++++.+.-.+ ++.+..+-|+++-+++---+.. -+.|+|||+
T Consensus 321 ~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~----gceiviatP 380 (673)
T KOG0333|consen 321 EGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSM----GCEIVIATP 380 (673)
T ss_pred cCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhc----cceeeecCc
Confidence 356899999999999998876543 4678888999988876433333 578999998
No 228
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=85.56 E-value=2.9 Score=48.49 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=50.2
Q ss_pred CCCeEEEEeCChHHHH-HHHHHHHccCceEEEeCCCCHHHHHHHHhcccC--CCEEEEEecc
Q 011113 87 KGGKTIVFTQTKRDAD-EVSLALTSIIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATD 145 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~-~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~--g~~~iLVaT~ 145 (493)
....+||.+|+++.+. ++...+..++.+..+.++++..++..+++.+.. +.++||++|+
T Consensus 499 ~~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 499 CPGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 3578999999999987 454444568999999999999999999998876 8899999998
No 229
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=85.39 E-value=1.2 Score=48.88 Aligned_cols=53 Identities=23% Similarity=0.392 Sum_probs=45.7
Q ss_pred HhcccCCCEEEEEecccccccCCCCCccEEE--------eCCCCCChhHHHHHhhccCCCC
Q 011113 130 LNGFRQGKFTVLVATDVAARGLDIPNVDLII--------HYELPNDPETFVHRSGRTGRAG 182 (493)
Q Consensus 130 ~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI--------~~~~p~~~~~y~qr~GR~gR~g 182 (493)
-++|.+|+-.|-|-+.+++-||.+..-.-|+ -..+||+.+.-||..|||.|..
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSN 910 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSN 910 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhccccccc
Confidence 4578899999999999999999997655444 4779999999999999999976
No 230
>COG4907 Predicted membrane protein [Function unknown]
Probab=85.15 E-value=0.8 Score=46.78 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=27.1
Q ss_pred hhhHHHHhhhhcCcCcCccccEEEeeccccceeEeecCHHHHHH
Q 011113 304 ARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKE 347 (493)
Q Consensus 304 ~~~i~~~~~~~~~~~~~~ig~i~i~~~~~~~gs~fdvp~~~a~~ 347 (493)
|.....+|++...+.....-.|.+|+++-+-++-.-|.++.++.
T Consensus 488 W~aFKnfLsd~s~lke~~pesI~~W~~ylVYatALGV~dkVvka 531 (595)
T COG4907 488 WQAFKNFLSDYSQLKEAKPESIHLWEQYLVYATALGVSDKVVKA 531 (595)
T ss_pred HHHHHHHHHhHHHHhhCCCcceehHhhhhhhhhhhccHHHHHHH
Confidence 44556777777766666678899999874333333444444433
No 231
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=84.47 E-value=4.6 Score=42.89 Aligned_cols=70 Identities=10% Similarity=0.175 Sum_probs=50.4
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc------ccccCCCCCcc
Q 011113 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNVD 157 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~------~~~Gidip~v~ 157 (493)
.++||.++|++.+.++++.+.. .+.+..++|+.+...+.+ .+.....+|||+|+- ....+.+.+++
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLK---QLEARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHH---HHhCCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 5799999999999998887763 356888999876554433 333456789999972 22345667777
Q ss_pred EEEe
Q 011113 158 LIIH 161 (493)
Q Consensus 158 ~VI~ 161 (493)
+||.
T Consensus 240 ~lVi 243 (475)
T PRK01297 240 VMVL 243 (475)
T ss_pred eEEe
Confidence 7774
No 232
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=83.47 E-value=11 Score=36.02 Aligned_cols=87 Identities=15% Similarity=0.215 Sum_probs=65.4
Q ss_pred cCceEEEeCCCCHHHHHHHHhcccCCC----EEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccC-CCCCcc
Q 011113 111 IIASEALHGDISQHQRERTLNGFRQGK----FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG-RAGKEG 185 (493)
Q Consensus 111 ~~~~~~lhg~~~~~~r~~~~~~F~~g~----~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~g-R~g~~g 185 (493)
.+.+..++++.+... -.|.++. ..|+|.=+.++||+.++.+.+.....-+...++++||.=--| |.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 378888987755433 3444443 889999999999999999999988888889999999863333 555567
Q ss_pred eEEEecChhhHHHHHHH
Q 011113 186 TAILMFTSSQRRTVRSL 202 (493)
Q Consensus 186 ~~i~l~~~~e~~~~~~l 202 (493)
.|-++.++.-...+..+
T Consensus 185 l~Ri~~~~~l~~~f~~i 201 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHI 201 (239)
T ss_pred ceEEecCHHHHHHHHHH
Confidence 88888877665555555
No 233
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=82.58 E-value=3.5 Score=39.73 Aligned_cols=155 Identities=19% Similarity=0.271 Sum_probs=83.1
Q ss_pred cEEEEeccCChHH------HHHHHHhcCCCceEEeccccccccccceEEEEEEcCcc-cHHHHHHHHHHHH-cCCCeEEE
Q 011113 22 QSMLFSATMPSWV------KKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT-SKRTILSDLITVY-AKGGKTIV 93 (493)
Q Consensus 22 q~ll~SAT~p~~v------~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ll~~~-~~~~~~IV 93 (493)
.+-+++.|++... ++++++|-.. .|.|..+..... +....+..++..- .+.-++||
T Consensus 4 kIGivTgtvSq~ed~~r~Ae~l~~~Yg~~----------------~I~h~tyPdnf~~e~EttIskI~~lAdDp~mKaIV 67 (275)
T PF12683_consen 4 KIGIVTGTVSQSEDEYRGAEELIKKYGDV----------------MIKHVTYPDNFMSEQETTISKIVSLADDPDMKAIV 67 (275)
T ss_dssp EEEEEE--TTT-HHHHHHHHHHHHHHHHH----------------EEEEEE--TTGGGCHHHHHHHHHGGGG-TTEEEEE
T ss_pred EEEEEeCCcccChHHHHHHHHHHHHhCcc----------------eEEEEeCCCcccchHHHHHHHHHHhccCCCccEEE
Confidence 4667888887543 3455665432 344444444432 3444555555432 34569999
Q ss_pred EeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCC------CccEEEeCCCCC
Q 011113 94 FTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP------NVDLIIHYELPN 166 (493)
Q Consensus 94 F~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip------~v~~VI~~~~p~ 166 (493)
|++...-+-...+.+++ .-.+..+-+.+.. --.+++. ..+|.+.+|...+|..|+ .....|||.+|.
T Consensus 68 v~q~vpGt~~af~kIkekRpDIl~ia~~~~E--Dp~~i~~----~aDi~~~~D~~~~G~~i~~~Ak~mGAktFVh~sfpr 141 (275)
T PF12683_consen 68 VSQAVPGTAEAFRKIKEKRPDILLIAGEPHE--DPEVISS----AADIVVNPDEISRGYTIVWAAKKMGAKTFVHYSFPR 141 (275)
T ss_dssp EE-SS---HHHHHHHHHH-TTSEEEESS--S---HHHHHH----HSSEEEE--HHHHHHHHHHHHHHTT-S-EEEEEETT
T ss_pred EeCCCcchHHHHHHHHhcCCCeEEEcCCCcC--CHHHHhh----ccCeEeccchhhccHHHHHHHHHcCCceEEEEechh
Confidence 99988877777777764 4556666665322 2233333 457888999999998875 346788888887
Q ss_pred ChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCCC
Q 011113 167 DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPV 217 (493)
Q Consensus 167 ~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~ 217 (493)
+.. |....= .+..++.-.+.++++|..+..|.
T Consensus 142 hms-~~~l~~------------------Rr~~M~~~C~~lGi~fv~~taPD 173 (275)
T PF12683_consen 142 HMS-YELLAR------------------RRDIMEEACKDLGIKFVEVTAPD 173 (275)
T ss_dssp GGG-SHHHHH------------------HHHHHHHHHHHCT--EEEEEE--
T ss_pred hcc-hHHHHH------------------HHHHHHHHHHHcCCeEEEEeCCC
Confidence 655 332221 23567777888899998876665
No 234
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=81.95 E-value=4 Score=49.01 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=53.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----------------cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc----
Q 011113 88 GGKTIVFTQTKRDADEVSLALTS-----------------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV---- 146 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----------------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~---- 146 (493)
..++|+.+|+++.+.++.+.|+. .+.+..+||+.++.+|.+.++. ..+|||+|+-
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~----ppdILVTTPEsL~~ 112 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRN----PPDILITTPESLYL 112 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcC----CCCEEEecHHHHHH
Confidence 35899999999999988877642 3568889999999999876654 5689999972
Q ss_pred -cc-cc-CCCCCccEEEe
Q 011113 147 -AA-RG-LDIPNVDLIIH 161 (493)
Q Consensus 147 -~~-~G-idip~v~~VI~ 161 (493)
+. +. ..+.+|++||.
T Consensus 113 LLtsk~r~~L~~Vr~VIV 130 (1490)
T PRK09751 113 MLTSRARETLRGVETVII 130 (1490)
T ss_pred HHhhhhhhhhccCCEEEE
Confidence 22 22 35788898883
No 235
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=81.08 E-value=1.6 Score=39.06 Aligned_cols=7 Identities=43% Similarity=1.032 Sum_probs=2.9
Q ss_pred CccccEE
Q 011113 320 DEIGKIH 326 (493)
Q Consensus 320 ~~ig~i~ 326 (493)
++||+|+
T Consensus 89 ~qIGKVD 95 (215)
T KOG3262|consen 89 EQIGKVD 95 (215)
T ss_pred hhhcchh
Confidence 3344443
No 236
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=80.96 E-value=6.1 Score=41.03 Aligned_cols=107 Identities=18% Similarity=0.319 Sum_probs=69.0
Q ss_pred eEEEEeCChHHHHHHHHHHHc------cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc-----ccc---ccCCCCC
Q 011113 90 KTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA---RGLDIPN 155 (493)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~---~Gidip~ 155 (493)
-+||..||++.|.+|.+-+.. .+.+..+-|+.+.++ -++.|++...+|||+|+ ++. ..+|+-.
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~---Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEE---DIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHH---HHHHHHHhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 579999999999888776542 356888888865544 46677778889999998 333 3566667
Q ss_pred ccEEEe--------CCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHh
Q 011113 156 VDLIIH--------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (493)
Q Consensus 156 v~~VI~--------~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~ 206 (493)
+.++|. +++-.+....+-++-+--|.| |++.+....+..|.+.-
T Consensus 158 Le~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTG-------LFSATq~~~v~dL~raG 209 (567)
T KOG0345|consen 158 LEILVLDEADRLLDMGFEASVNTILSFLPKQRRTG-------LFSATQTQEVEDLARAG 209 (567)
T ss_pred cceEEecchHhHhcccHHHHHHHHHHhcccccccc-------cccchhhHHHHHHHHhh
Confidence 777663 334445555555555544443 44444444555554443
No 237
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=80.57 E-value=3.1 Score=37.25 Aligned_cols=46 Identities=37% Similarity=0.636 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEe
Q 011113 5 GFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL 50 (493)
Q Consensus 5 GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~ 50 (493)
.+.+.+..++..+++..+++++|||+++.+......++.+...+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~ 190 (201)
T smart00487 145 GFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDV 190 (201)
T ss_pred CcHHHHHHHHHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeC
Confidence 5678888899988889999999999999999999888886666654
No 238
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=78.81 E-value=6.5 Score=44.24 Aligned_cols=70 Identities=13% Similarity=0.199 Sum_probs=51.0
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc-cccccC---------C
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAARGL---------D 152 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-~~~~Gi---------d 152 (493)
+..++||.+||++.+.++...|.+ .+.+..++|+.+.++|..+.+ ..+|||+|+ .+..++ .
T Consensus 80 ~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~-----~~~IivtTPd~L~~~~L~~~~~~~~~ 154 (742)
T TIGR03817 80 PRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWARE-----HARYVLTNPDMLHRGILPSHARWARF 154 (742)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhc-----CCCEEEEChHHHHHhhccchhHHHHH
Confidence 346899999999999999988874 367888999999887754433 357999996 222221 1
Q ss_pred CCCccEEEe
Q 011113 153 IPNVDLIIH 161 (493)
Q Consensus 153 ip~v~~VI~ 161 (493)
+.++.+||.
T Consensus 155 l~~l~~vVi 163 (742)
T TIGR03817 155 LRRLRYVVI 163 (742)
T ss_pred HhcCCEEEE
Confidence 567888773
No 239
>PRK13767 ATP-dependent helicase; Provisional
Probab=78.58 E-value=6.7 Score=45.09 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=49.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----------------cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc-c--
Q 011113 89 GKTIVFTQTKRDADEVSLALTS-----------------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-A-- 148 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----------------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~-~-- 148 (493)
.++|+.+|+++.+.+++..|.. .+.+...||+.++.++.+.++. ..+|||+|+-- .
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~----~p~IlVtTPE~L~~l 160 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKK----PPHILITTPESLAIL 160 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhC----CCCEEEecHHHHHHH
Confidence 4699999999999887764431 3467889999999998877654 56899999721 1
Q ss_pred ---cc--CCCCCccEEEe
Q 011113 149 ---RG--LDIPNVDLIIH 161 (493)
Q Consensus 149 ---~G--idip~v~~VI~ 161 (493)
.. -.+.++.+||.
T Consensus 161 l~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 161 LNSPKFREKLRTVKWVIV 178 (876)
T ss_pred hcChhHHHHHhcCCEEEE
Confidence 11 13567787773
No 240
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=76.17 E-value=60 Score=32.94 Aligned_cols=58 Identities=16% Similarity=0.080 Sum_probs=32.4
Q ss_pred EEEEEeecCccccCCcchhhHHHHhhhhcCcCcCccccEEEeeccc----cceeEeec-CHHHHHHHHhhcC
Q 011113 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDR----VQGAVFDL-PEEIAKELLNKQI 353 (493)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~~----~~gs~fdv-p~~~a~~~~~~~~ 353 (493)
++|+|..= ...++..+|..++..... |-.+.|..+.. ...+||+. ..+.|+++++.+.
T Consensus 194 ~~lfV~nL----p~~vtee~L~~~F~~fG~-----V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 256 (346)
T TIGR01659 194 TNLYVTNL----PRTITDDQLDTIFGKYGQ-----IVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALN 256 (346)
T ss_pred ceeEEeCC----CCcccHHHHHHHHHhcCC-----EEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 45666422 234778888888765544 44555554321 12367777 4466666666543
No 241
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=75.10 E-value=8.3 Score=41.48 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=46.8
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc-----cc-cccCCCCCc
Q 011113 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA-ARGLDIPNV 156 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~-~~Gidip~v 156 (493)
..++||.+||++.|.++.+.+.. .+.+..+.++.+..++...+ +. ..+|||+|+ .+ ...+++.++
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l---~~-~~~IiV~TPgrL~~~l~~~~~~l~~v 271 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRI---QQ-GVELIVGTPGRLIDLLSKHDIELDNV 271 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHh---cC-CCCEEEECHHHHHHHHHcCCccchhe
Confidence 45799999999999888776653 24566666665544433222 22 468999995 33 335778888
Q ss_pred cEEEe
Q 011113 157 DLIIH 161 (493)
Q Consensus 157 ~~VI~ 161 (493)
.+||.
T Consensus 272 ~~lVi 276 (518)
T PLN00206 272 SVLVL 276 (518)
T ss_pred eEEEe
Confidence 88773
No 242
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=74.25 E-value=4.7 Score=42.68 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=67.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-------ccccCCCCCc
Q 011113 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-------AARGLDIPNV 156 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-------~~~Gidip~v 156 (493)
--+||..||++.|.++.+.|.+ .|.+..+-|+..-.. +.-+-..++|||||+- -...++.+++
T Consensus 142 lGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~-----E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~l 216 (758)
T KOG0343|consen 142 LGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKF-----ELERISQMNILVCTPGRLLQHMDENPNFSTSNL 216 (758)
T ss_pred ceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHH-----HHHhhhcCCeEEechHHHHHHhhhcCCCCCCcc
Confidence 4789999999999999999975 366777777764332 2222246899999982 1234555666
Q ss_pred cEEEe--------CCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCce
Q 011113 157 DLIIH--------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (493)
Q Consensus 157 ~~VI~--------~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~ 211 (493)
.++|. +++-...+..+--+ -+-...+|++.+....++.|.+..-..++
T Consensus 217 QmLvLDEADR~LDMGFk~tL~~Ii~~l-------P~~RQTLLFSATqt~svkdLaRLsL~dP~ 272 (758)
T KOG0343|consen 217 QMLVLDEADRMLDMGFKKTLNAIIENL-------PKKRQTLLFSATQTKSVKDLARLSLKDPV 272 (758)
T ss_pred eEEEeccHHHHHHHhHHHHHHHHHHhC-------ChhheeeeeecccchhHHHHHHhhcCCCc
Confidence 65552 22223333333222 12234566676666777777776444443
No 243
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=73.99 E-value=60 Score=28.31 Aligned_cols=59 Identities=10% Similarity=-0.010 Sum_probs=35.0
Q ss_pred eEEEEEeecCccccCCcchhhHHHHhhhhcCcCcCccccEEEeecc----ccceeEeec-CHHHHHHHHhhcC
Q 011113 286 WVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADD----RVQGAVFDL-PEEIAKELLNKQI 353 (493)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~----~~~gs~fdv-p~~~a~~~~~~~~ 353 (493)
..+|+|..= ...++..+|..++.... .|-.+.+..+. ....+||+. ..+.|+.+++...
T Consensus 34 ~~~lfVgnL----~~~~te~~L~~~F~~~G-----~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ln 97 (144)
T PLN03134 34 STKLFIGGL----SWGTDDASLRDAFAHFG-----DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMD 97 (144)
T ss_pred CCEEEEeCC----CCCCCHHHHHHHHhcCC-----CeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC
Confidence 446776522 23478889988887643 35566665432 123477777 4566677776543
No 244
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=73.27 E-value=1.7 Score=42.18 Aligned_cols=18 Identities=56% Similarity=1.507 Sum_probs=16.2
Q ss_pred CccccCCCCCcccCCCCC
Q 011113 476 GACFNCGKSGHRASECPN 493 (493)
Q Consensus 476 ~~c~~c~~~gh~~~~c~~ 493 (493)
+.||.|++.+|+++|||.
T Consensus 165 ~~c~~c~~~~h~~~~C~~ 182 (261)
T KOG4400|consen 165 GTCFRCGKVGHGSRDCPS 182 (261)
T ss_pred CccccCCCcceecccCCc
Confidence 349999999999999994
No 245
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=72.93 E-value=37 Score=36.14 Aligned_cols=85 Identities=11% Similarity=0.255 Sum_probs=52.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHcc-------CceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-------ccccCCC
Q 011113 88 GGKTIVFTQTKRDADEVSLALTSI-------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-------AARGLDI 153 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~-------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-------~~~Gidi 153 (493)
+.-+||.++|++.|.++++.+++- +++..+-|.--..++. ++|. -++|||+|+- -...|++
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKA----RLRK-GiNILIgTPGRLvDHLknT~~i~~ 285 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKA----RLRK-GINILIGTPGRLVDHLKNTKSIKF 285 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHH----HHhc-CceEEEcCchHHHHHHhccchhee
Confidence 347899999999999999888752 1233333433233332 3344 4799999981 2345677
Q ss_pred CCccEEEe--------CCCCCChhHHHHHhhc
Q 011113 154 PNVDLIIH--------YELPNDPETFVHRSGR 177 (493)
Q Consensus 154 p~v~~VI~--------~~~p~~~~~y~qr~GR 177 (493)
..+.+||. .++-.++...+--++-
T Consensus 286 s~LRwlVlDEaDrlleLGfekdit~Il~~v~~ 317 (708)
T KOG0348|consen 286 SRLRWLVLDEADRLLELGFEKDITQILKAVHS 317 (708)
T ss_pred eeeeEEEecchhHHHhccchhhHHHHHHHHhh
Confidence 77787773 3344566655555543
No 246
>COG4907 Predicted membrane protein [Function unknown]
Probab=72.54 E-value=3.1 Score=42.64 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=10.6
Q ss_pred CCCcEEEEeccCCh
Q 011113 19 PKRQSMLFSATMPS 32 (493)
Q Consensus 19 ~~~q~ll~SAT~p~ 32 (493)
++..+..++.|+|.
T Consensus 116 ~e~~tf~~vy~~~~ 129 (595)
T COG4907 116 NEVRTFKFVYTLPE 129 (595)
T ss_pred ccceEEEeeeeccc
Confidence 35678888888875
No 247
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=72.27 E-value=16 Score=40.77 Aligned_cols=59 Identities=12% Similarity=0.092 Sum_probs=47.6
Q ss_pred HHHHHcCCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc
Q 011113 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (493)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (493)
++..+ .+.+++|.++|...|.+.++.+.. ++.+..+.++++.++|...++ .+|+++|+.
T Consensus 91 ~l~aL-~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 91 YLNAL-TGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred HHHHH-hCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 34444 456899999999999999888764 477899999999988877764 589999986
No 248
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=72.13 E-value=9.3 Score=39.88 Aligned_cols=108 Identities=17% Similarity=0.212 Sum_probs=62.4
Q ss_pred CeEEEEeCChHHHHHHHHHHHc------cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc------------cccc
Q 011113 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------------AARG 150 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~------------~~~G 150 (493)
-.+||.|+|++.|-+++..++. .+.+..+-|+-. +..-.++... .++|||||+- +.+-
T Consensus 155 ~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~---~~~e~~kl~k-~~niliATPGRLlDHlqNt~~f~~r~ 230 (543)
T KOG0342|consen 155 TGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNN---FSVEADKLVK-GCNILIATPGRLLDHLQNTSGFLFRN 230 (543)
T ss_pred eeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCcc---chHHHHHhhc-cccEEEeCCchHHhHhhcCCcchhhc
Confidence 4789999999999887766653 245555656643 2223334444 6899999981 1111
Q ss_pred C---CCCCccEEEeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhC
Q 011113 151 L---DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (493)
Q Consensus 151 i---dip~v~~VI~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~ 207 (493)
+ =+...+++...+++.+.+..+--..+. ...++++.+....++.+.+...
T Consensus 231 ~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~-------rqt~LFSAT~~~kV~~l~~~~L 283 (543)
T KOG0342|consen 231 LKCLVLDEADRLLDIGFEEDVEQIIKILPKQ-------RQTLLFSATQPSKVKDLARGAL 283 (543)
T ss_pred cceeEeecchhhhhcccHHHHHHHHHhcccc-------ceeeEeeCCCcHHHHHHHHHhh
Confidence 1 122333444556666666666666532 3345555555566666665443
No 249
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=71.76 E-value=25 Score=36.45 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=14.0
Q ss_pred CcchhhHHHHhhhhcCcCcCcc
Q 011113 301 FMSARSVMGFLSDVYPTAADEI 322 (493)
Q Consensus 301 ~~~~~~i~~~~~~~~~~~~~~i 322 (493)
..++.+|-.+.....++....|
T Consensus 299 da~~~~l~~~Fk~FG~Ik~~~I 320 (419)
T KOG0116|consen 299 DATPAELEEVFKQFGPIKEGGI 320 (419)
T ss_pred CCCHHHHHHHHhhcccccccce
Confidence 3567777777777766555443
No 250
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=71.33 E-value=11 Score=39.52 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=50.7
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHH-HHHHHHhcccCCCEEEEEeccc-------ccccCCCCC
Q 011113 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQH-QRERTLNGFRQGKFTVLVATDV-------AARGLDIPN 155 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~-~r~~~~~~F~~g~~~iLVaT~~-------~~~Gidip~ 155 (493)
-++||.++|+..+.+++..+.. ++.|..+.|.-+-+ +..+....-....++|||+|+- .-.++|+..
T Consensus 216 LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~ 295 (620)
T KOG0350|consen 216 LRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKH 295 (620)
T ss_pred eEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhh
Confidence 4899999999999999998874 35566666654433 3333444444457899999982 356788887
Q ss_pred ccEEE
Q 011113 156 VDLII 160 (493)
Q Consensus 156 v~~VI 160 (493)
+.+.|
T Consensus 296 LrfLV 300 (620)
T KOG0350|consen 296 LRFLV 300 (620)
T ss_pred ceEEE
Confidence 77755
No 251
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=69.72 E-value=6.5 Score=45.59 Aligned_cols=96 Identities=19% Similarity=0.213 Sum_probs=69.0
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHH-ccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCCC
Q 011113 86 AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (493)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~~ 164 (493)
....++|||+.-...-+.+...+. ..+.....-+ -++-...+..|++ ---+|+=+...+.|+|+-+..||+..++
T Consensus 1219 ~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~eP 1294 (1394)
T KOG0298|consen 1219 NEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEP 1294 (1394)
T ss_pred CcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheecc
Confidence 345789999987776666665554 2332222111 2344566777776 2234566778889999999999999999
Q ss_pred CCChhHHHHHhhccCCCCCcc
Q 011113 165 PNDPETFVHRSGRTGRAGKEG 185 (493)
Q Consensus 165 p~~~~~y~qr~GR~gR~g~~g 185 (493)
-.++..-.|-+||..|.|++-
T Consensus 1295 iLN~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1295 ILNPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred ccCchHHHhhhhhhhhccccc
Confidence 999999999999999999653
No 252
>KOG4284 consensus DEAD box protein [Transcription]
Probab=69.49 E-value=21 Score=38.72 Aligned_cols=84 Identities=14% Similarity=0.186 Sum_probs=56.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc------cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc------cccccCCCCC
Q 011113 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPN 155 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidip~ 155 (493)
..+.+|.++|++.+-++.+.+.. ++.|.++-|+.+...-..-+ .+.+|+|.|+ +--+-+|+..
T Consensus 93 ~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-----k~~rIvIGtPGRi~qL~el~~~n~s~ 167 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-----KQTRIVIGTPGRIAQLVELGAMNMSH 167 (980)
T ss_pred cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-----hhceEEecCchHHHHHHHhcCCCccc
Confidence 45789999999999998887753 46788888887655433333 3567999998 2234477888
Q ss_pred ccEEEe--CCCCCChhHHHHHhh
Q 011113 156 VDLIIH--YELPNDPETFVHRSG 176 (493)
Q Consensus 156 v~~VI~--~~~p~~~~~y~qr~G 176 (493)
|++.|. .|--.+..+|.|-+-
T Consensus 168 vrlfVLDEADkL~~t~sfq~~In 190 (980)
T KOG4284|consen 168 VRLFVLDEADKLMDTESFQDDIN 190 (980)
T ss_pred eeEEEeccHHhhhchhhHHHHHH
Confidence 887774 222234445555443
No 253
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=69.42 E-value=7.5 Score=38.96 Aligned_cols=53 Identities=19% Similarity=0.175 Sum_probs=43.7
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011113 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
.-++||+||++.+.++++.|.- .+.+.++.|+++.-.+...+.+ .-.++|||+
T Consensus 76 iFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~----rPHvVvatP 133 (442)
T KOG0340|consen 76 IFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSD----RPHVVVATP 133 (442)
T ss_pred ceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhccc----CCCeEecCc
Confidence 3689999999999999999862 4789999999987776666655 667999997
No 254
>PRK02362 ski2-like helicase; Provisional
Probab=68.98 E-value=8.2 Score=43.49 Aligned_cols=75 Identities=17% Similarity=0.250 Sum_probs=51.2
Q ss_pred HHHHHHcCCCeEEEEeCChHHHHHHHHHHHc----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-----cccc
Q 011113 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG 150 (493)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~~G 150 (493)
.+++.+.++.++|+.+|+++.|.+.+..+++ ++.+..++|++..... .+ +..+|+|||+- +..+
T Consensus 59 ail~~l~~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~l--~~~~IiV~Tpek~~~llr~~ 131 (737)
T PRK02362 59 AMLKAIARGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE-----WL--GDNDIIVATSEKVDSLLRNG 131 (737)
T ss_pred HHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc-----cc--CCCCEEEECHHHHHHHHhcC
Confidence 3455544678999999999999999988874 4678889998764331 11 34679999952 2222
Q ss_pred -CCCCCccEEEe
Q 011113 151 -LDIPNVDLIIH 161 (493)
Q Consensus 151 -idip~v~~VI~ 161 (493)
.-+.++.+||.
T Consensus 132 ~~~l~~v~lvVi 143 (737)
T PRK02362 132 APWLDDITCVVV 143 (737)
T ss_pred hhhhhhcCEEEE
Confidence 22567887773
No 255
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=68.27 E-value=26 Score=30.32 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=39.8
Q ss_pred HHHHHHHHH-HHcCCCeEEEEeCChHHHHHHHHHHHcc-CceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCC
Q 011113 75 RTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD 152 (493)
Q Consensus 75 ~~~l~~ll~-~~~~~~~~IVF~~t~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gid 152 (493)
...+..|++ .+..+.+++|+|++.+.++.|-+.|-.. -....=|+-.... ......|+|+++... ..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~i~~~~~~--~~ 83 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPVLITWDQEA--NP 83 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------STT--SEEEE-TTS-----
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeEEEecCccc--CC
Confidence 466666664 4566889999999999999999998642 1122223221111 111247999987543 22
Q ss_pred CCCccEEEeCCC
Q 011113 153 IPNVDLIIHYEL 164 (493)
Q Consensus 153 ip~v~~VI~~~~ 164 (493)
.+..+++||.+.
T Consensus 84 ~~~~~vLinL~~ 95 (137)
T PF04364_consen 84 NNHADVLINLSG 95 (137)
T ss_dssp -S--SEEEE--S
T ss_pred CCCCCEEEECCC
Confidence 334688998764
No 256
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=67.58 E-value=16 Score=29.26 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=31.7
Q ss_pred HHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCC
Q 011113 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (493)
Q Consensus 82 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~ 122 (493)
+..+.+..+++|+|.+-..+...+..|.. ++.+..|.|++.
T Consensus 55 ~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 55 LDQLPDDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred HhhCCCCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 44445678999999987778888888875 777888888874
No 257
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=67.56 E-value=28 Score=38.43 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=44.1
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011113 86 AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
..+.+++|.++|+..|.+.++.+.. ++.+..+.+++++++|.... ..+|+++|+
T Consensus 142 l~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~ 200 (656)
T PRK12898 142 LAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADITYCTN 200 (656)
T ss_pred hcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCEEEECC
Confidence 3568999999999999998888764 47888999999988777654 357999987
No 258
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=67.00 E-value=50 Score=32.73 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=58.5
Q ss_pred ccHHHHHHHHHHHH-----cC-CCeEEEEeCChHHHHHHHHHHH-ccCceEEEeCCCCHHHHHHHHh------------c
Q 011113 72 TSKRTILSDLITVY-----AK-GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLN------------G 132 (493)
Q Consensus 72 ~~k~~~l~~ll~~~-----~~-~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~~~~------------~ 132 (493)
..|...|.++++.+ .. +.++||.++..++.+.|..+|. +.+....+.|.....+....-+ .
T Consensus 95 S~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (297)
T PF11496_consen 95 SGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSK 174 (297)
T ss_dssp -HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S---------------
T ss_pred CchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccc
Confidence 46889999999877 22 3589999999999998888877 4666666766554444332220 0
Q ss_pred c---cCCCEEEEE-eccccccc----CCCCCccEEEeCCCCCChh-HHHHHhhccCCCCCcceEEEecCh
Q 011113 133 F---RQGKFTVLV-ATDVAARG----LDIPNVDLIIHYELPNDPE-TFVHRSGRTGRAGKEGTAILMFTS 193 (493)
Q Consensus 133 F---~~g~~~iLV-aT~~~~~G----idip~v~~VI~~~~p~~~~-~y~qr~GR~gR~g~~g~~i~l~~~ 193 (493)
. ..-...|-+ .|+-+... ++-..+++||-+|.-.+.. ..+|++=...|..+.-.++.++..
T Consensus 175 ~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~~~~PiirLv~~ 244 (297)
T PF11496_consen 175 KKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRNRLCPIIRLVPS 244 (297)
T ss_dssp -------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH-------S--EEEEEET
T ss_pred cccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCCCCCcEEEEeeC
Confidence 0 112344544 44434332 2234778999999765533 355555333332233444555443
No 259
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=66.93 E-value=18 Score=40.16 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=48.4
Q ss_pred HHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc---cCceEEEeCCCCHHHHHHHHhcccCC--CEEEEEecccccc
Q 011113 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQG--KFTVLVATDVAAR 149 (493)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~r~~~~~~F~~g--~~~iLVaT~~~~~ 149 (493)
..+|.....+++-||.||+.-.-..+. .+.+ .+.+..+||. |.+|.++-..+..+ .++|||+|--++.
T Consensus 439 layLkq~g~~gpHLVVvPsSTleNWlr-Ef~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la~ 511 (941)
T KOG0389|consen 439 LAYLKQIGNPGPHLVVVPSSTLENWLR-EFAKWCPSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLAA 511 (941)
T ss_pred HHHHHHcCCCCCcEEEecchhHHHHHH-HHHHhCCceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeeccc
Confidence 334555556788999999864333333 3333 4779999998 68999888888776 7899999965544
No 260
>PRK01172 ski2-like helicase; Provisional
Probab=66.73 E-value=44 Score=37.21 Aligned_cols=73 Identities=19% Similarity=0.225 Sum_probs=48.8
Q ss_pred HHHHHcCCCeEEEEeCChHHHHHHHHHHHc----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-----cccc-
Q 011113 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG- 150 (493)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~~G- 150 (493)
+++.+..+.++|+.+|+++.|.+.++.+.+ ++.+..++|+...... .+ ...+|+|+|+- +.+.
T Consensus 58 il~~l~~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~--~~-----~~~dIiv~Tpek~~~l~~~~~ 130 (674)
T PRK01172 58 IYETFLAGLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD--FI-----KRYDVVILTSEKADSLIHHDP 130 (674)
T ss_pred HHHHHHhCCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh--hh-----ccCCEEEECHHHHHHHHhCCh
Confidence 344444567899999999999999888764 4567778888754321 11 24589999972 2222
Q ss_pred CCCCCccEEE
Q 011113 151 LDIPNVDLII 160 (493)
Q Consensus 151 idip~v~~VI 160 (493)
..+.++++||
T Consensus 131 ~~l~~v~lvV 140 (674)
T PRK01172 131 YIINDVGLIV 140 (674)
T ss_pred hHHhhcCEEE
Confidence 2366778777
No 261
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=66.40 E-value=45 Score=34.46 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=46.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc------cccccCCCCCc
Q 011113 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 156 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~------~~~~Gidip~v 156 (493)
+-+++|..+|++.+.+.-..++. .+.+..+.|+-+.+++-..+. ..-+|+|||+ .++.-+++..|
T Consensus 90 g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~----~npDii~ATpgr~~h~~vem~l~l~sv 165 (529)
T KOG0337|consen 90 GLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLN----ENPDIIIATPGRLLHLGVEMTLTLSSV 165 (529)
T ss_pred ccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhc----cCCCEEEecCceeeeeehheeccccce
Confidence 34999999999998887776653 244554444434444433332 2567999998 35556788889
Q ss_pred cEEEe
Q 011113 157 DLIIH 161 (493)
Q Consensus 157 ~~VI~ 161 (493)
.+||.
T Consensus 166 eyVVf 170 (529)
T KOG0337|consen 166 EYVVF 170 (529)
T ss_pred eeeee
Confidence 99883
No 262
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=66.31 E-value=16 Score=27.54 Aligned_cols=59 Identities=20% Similarity=0.162 Sum_probs=39.3
Q ss_pred EEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccccccc
Q 011113 91 TIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (493)
Q Consensus 91 ~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~G 150 (493)
.||.|....++..+.+.......+..+.|.....+....+..+... ..|+|++|--..|
T Consensus 2 ~l~ivEg~~da~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~D~~G 60 (76)
T smart00493 2 VLIIVEGPADAIALEKAGGFGGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDPDREG 60 (76)
T ss_pred EEEEEcCHHHHHHHHHhcCCCEEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCCChhH
Confidence 5888999998888888775444566666665444555566665443 5799998854333
No 263
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=66.16 E-value=14 Score=41.84 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=37.6
Q ss_pred CeEEEEe-CChHHHHHHHHHHHc---c-------------------------CceEEEeCCCCHHHHHHHHhcccCCCEE
Q 011113 89 GKTIVFT-QTKRDADEVSLALTS---I-------------------------IASEALHGDISQHQRERTLNGFRQGKFT 139 (493)
Q Consensus 89 ~~~IVF~-~t~~~~~~l~~~L~~---~-------------------------~~~~~lhg~~~~~~r~~~~~~F~~g~~~ 139 (493)
.+.|||+ +|++.++++++.+.+ . +.+..++|+.+.......+.. ...
T Consensus 62 ~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~----~p~ 137 (844)
T TIGR02621 62 PRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPH----RPA 137 (844)
T ss_pred cceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCC----CCc
Confidence 4677766 999999888776653 1 457788999877655444432 568
Q ss_pred EEEecc
Q 011113 140 VLVATD 145 (493)
Q Consensus 140 iLVaT~ 145 (493)
|||+|.
T Consensus 138 IIVgT~ 143 (844)
T TIGR02621 138 VIVGTV 143 (844)
T ss_pred EEEECH
Confidence 999993
No 264
>PTZ00424 helicase 45; Provisional
Probab=65.95 E-value=27 Score=35.91 Aligned_cols=70 Identities=16% Similarity=0.249 Sum_probs=46.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc------cccCCCCCc
Q 011113 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNV 156 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~------~~Gidip~v 156 (493)
..++||+++|++.+.++.+.+.. ...+..+.++....+.. +.+.+ ..+|+|+|+-. ...+.+.++
T Consensus 96 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~-~~~Ivv~Tp~~l~~~l~~~~~~l~~i 171 (401)
T PTZ00424 96 ACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDI---NKLKA-GVHMVVGTPGRVYDMIDKRHLRVDDL 171 (401)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHH---HHHcC-CCCEEEECcHHHHHHHHhCCcccccc
Confidence 45899999999999998887763 23456677776654433 23333 35799999732 234567788
Q ss_pred cEEEe
Q 011113 157 DLIIH 161 (493)
Q Consensus 157 ~~VI~ 161 (493)
++||.
T Consensus 172 ~lvVi 176 (401)
T PTZ00424 172 KLFIL 176 (401)
T ss_pred cEEEE
Confidence 88773
No 265
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=65.83 E-value=17 Score=39.42 Aligned_cols=58 Identities=21% Similarity=0.309 Sum_probs=50.2
Q ss_pred CCeEEEEeCChHHHHHHHHHHH-ccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011113 88 GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
.+-+||..|-....+.=...|. .++.+.++++.++.+++..++..+..|.+++|.-++
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECc
Confidence 5799999998887665555555 589999999999999999999999999999997766
No 266
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=65.24 E-value=38 Score=32.59 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=36.5
Q ss_pred EEcCcccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHcc
Q 011113 67 ISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI 111 (493)
Q Consensus 67 ~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~ 111 (493)
+.....+-.++|..+-+.+.++..+++|++|.++++.+.+.|++.
T Consensus 167 v~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~ 211 (256)
T COG2519 167 VFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRER 211 (256)
T ss_pred EEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc
Confidence 334444567778888888888899999999999999999999863
No 267
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=64.98 E-value=18 Score=28.37 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=31.2
Q ss_pred HHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCC
Q 011113 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (493)
Q Consensus 82 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~ 122 (493)
+..+.+..++++||.+-..+...+..|+. ++.+..|.|++.
T Consensus 45 ~~~~~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 45 LNELPKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred HHhcCCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 33445567899999987778888888875 568888999874
No 268
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=64.90 E-value=33 Score=28.24 Aligned_cols=70 Identities=29% Similarity=0.308 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHHHc---CCCeEEEEeCChHHHHHHHHHHHcc----CceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011113 73 SKRTILSDLITVYA---KGGKTIVFTQTKRDADEVSLALTSI----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 73 ~k~~~l~~ll~~~~---~~~~~IVF~~t~~~~~~l~~~L~~~----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
-|...+..++.... ...++||+|+++..++++.+.+... ..+..+|+.....+.... ......|+++|.
T Consensus 12 GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~t~ 87 (144)
T cd00046 12 GKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKL----LSGKTDIVVGTP 87 (144)
T ss_pred chhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHH----hcCCCCEEEECc
Confidence 45444433333332 4579999999999999988888742 557788887655554411 123567888886
Q ss_pred c
Q 011113 146 V 146 (493)
Q Consensus 146 ~ 146 (493)
.
T Consensus 88 ~ 88 (144)
T cd00046 88 G 88 (144)
T ss_pred H
Confidence 4
No 269
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=64.90 E-value=2.1 Score=45.79 Aligned_cols=18 Identities=17% Similarity=0.028 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhCCCceee
Q 011113 196 RRTVRSLERDVGCKFEFV 213 (493)
Q Consensus 196 ~~~~~~l~~~~~~~~~~~ 213 (493)
.+++..+.+.+-..+..+
T Consensus 263 skfv~y~~~kvlP~l~~l 280 (556)
T PF05918_consen 263 SKFVNYMCEKVLPKLSDL 280 (556)
T ss_dssp HHHHHHHHHHTCCCTT--
T ss_pred HHHHHHHHHHhcCChhhC
Confidence 345555555544444333
No 270
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=64.62 E-value=8.7 Score=37.39 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=18.2
Q ss_pred CCChhHHHHHhhccCCCC---CcceEEEecChhh
Q 011113 165 PNDPETFVHRSGRTGRAG---KEGTAILMFTSSQ 195 (493)
Q Consensus 165 p~~~~~y~qr~GR~gR~g---~~g~~i~l~~~~e 195 (493)
+.+++.|..|+-+.-..| +.--+++++...+
T Consensus 76 g~~IE~ya~rlfd~W~lG~k~~~dGvLLlVa~~d 109 (271)
T COG1512 76 GETIEQYATRLFDKWKLGDKAQDDGVLLLVAMND 109 (271)
T ss_pred CCCHHHHHHHHHHhcCCCccccCCCEEEEEEcCC
Confidence 568899998888763333 2222444454444
No 271
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=64.16 E-value=17 Score=40.98 Aligned_cols=126 Identities=17% Similarity=0.238 Sum_probs=72.9
Q ss_pred cCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHH-----HHHHHHHHHH-cC---CCeEEEEeCChH
Q 011113 29 TMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR-----TILSDLITVY-AK---GGKTIVFTQTKR 99 (493)
Q Consensus 29 T~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~-----~~l~~ll~~~-~~---~~~~IVF~~t~~ 99 (493)
.+++++.+.++.-+.+|...... ........-....+...-.-|. .++..+++.- .+ .-.+|-.+|=++
T Consensus 7 ~l~~~v~~~~~~~~~~~t~~Q~~--a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 7 ILDPRVREWFKRKFTSLTPPQRY--AIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKA 84 (814)
T ss_pred hcCHHHHHHHHHhcCCCCHHHHH--HHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHH
Confidence 35666666665555555443221 1111223333344444444453 3344444431 11 125666677777
Q ss_pred HHHHHHHHHH----c-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-ccc-------cCCCCCccEEE
Q 011113 100 DADEVSLALT----S-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AAR-------GLDIPNVDLII 160 (493)
Q Consensus 100 ~~~~l~~~L~----~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-~~~-------Gidip~v~~VI 160 (493)
....+-..|. . ++.+.+-||+++|.+|++..++ -.+|||+|+- ++- -=.+.+|.+||
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~----PPdILiTTPEsL~lll~~~~~r~~l~~vr~VI 154 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKN----PPHILITTPESLAILLNSPKFRELLRDVRYVI 154 (814)
T ss_pred HHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCC----CCcEEEeChhHHHHHhcCHHHHHHhcCCcEEE
Confidence 7777766664 2 6888999999999999877665 6789999982 111 11246788888
No 272
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=63.71 E-value=16 Score=37.74 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=41.7
Q ss_pred CeEEEEeCChHHHHHHHHHHHc-------cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011113 89 GKTIVFTQTKRDADEVSLALTS-------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
..++|.+||++.|.+++..+.+ .+.+.-+.++|+......++.. .-.|+|+|+
T Consensus 94 ~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d----~pdIvV~TP 153 (569)
T KOG0346|consen 94 PSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMD----LPDIVVATP 153 (569)
T ss_pred ceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHcc----CCCeEEeCh
Confidence 4789999999999998887764 3556677788887776666554 678999998
No 273
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=63.70 E-value=26 Score=39.85 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=47.8
Q ss_pred HHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc
Q 011113 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (493)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (493)
..++..+ .+..++|.++|+..|.+.++.+.. ++.+.+++++++..+|...+ ..+|+++|+-
T Consensus 115 pa~~~al-~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~g 180 (896)
T PRK13104 115 PAYLNAI-SGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTNN 180 (896)
T ss_pred HHHHHHh-cCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh------CCCEEEECCh
Confidence 3333443 456899999999999999988874 46788999999999887766 3689999983
No 274
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=63.56 E-value=55 Score=36.32 Aligned_cols=107 Identities=17% Similarity=0.207 Sum_probs=72.3
Q ss_pred EcCcccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHccCc---eEEE--------------------e-----C
Q 011113 68 STTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIA---SEAL--------------------H-----G 119 (493)
Q Consensus 68 ~~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~---~~~l--------------------h-----g 119 (493)
-+....|.-++..+++.. +.++||.++++..|.+|+..|+..++ |..+ + .
T Consensus 36 Gvtgs~kt~~~a~~~~~~--~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~~~ 113 (655)
T TIGR00631 36 GVTGSGKTFTMANVIAQV--NRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDASIN 113 (655)
T ss_pred CCCCcHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCCCC
Confidence 345566777777777664 46899999999999999999976431 3333 1 1
Q ss_pred CCCHHHHHHHHhcccCCCEEEEEecccccccCCCCC----ccEEEeCCCCCChhHHHHHhh
Q 011113 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----VDLIIHYELPNDPETFVHRSG 176 (493)
Q Consensus 120 ~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~----v~~VI~~~~p~~~~~y~qr~G 176 (493)
.--...|..++..+..+.-.|+|||-.+-.++--|+ ..+.+..+-..+.+.++.+.-
T Consensus 114 ~~i~~~R~~al~~L~~~~~~ivVasv~~i~~l~~p~~~~~~~~~l~~G~~i~~~~l~~~Lv 174 (655)
T TIGR00631 114 DEIERLRHSATRSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRLV 174 (655)
T ss_pred hHHHHHHHHHHHHHHhCCCeEEEEcHHHhcCCCCHHHHHhccEEEeCCCCcCHHHHHHHHH
Confidence 112457788888887776678888866666665443 345666666677777766553
No 275
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=61.78 E-value=3.7 Score=42.50 Aligned_cols=16 Identities=38% Similarity=0.916 Sum_probs=15.2
Q ss_pred ccccCCCCCcccCCCC
Q 011113 477 ACFNCGKSGHRASECP 492 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~ 492 (493)
-|+.|+.-||+++||+
T Consensus 287 ~c~~cg~~gH~~~dc~ 302 (554)
T KOG0119|consen 287 VCKICGPLGHISIDCK 302 (554)
T ss_pred cccccCCcccccccCC
Confidence 4999999999999997
No 276
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=59.36 E-value=68 Score=28.26 Aligned_cols=85 Identities=25% Similarity=0.391 Sum_probs=48.6
Q ss_pred ccHHH-HHHHHHHHHcC--CCeEEEEeCChHHHHHHHHHHHcc------CceEEEeCCCCHHHHHHHHhcccCCCEEEEE
Q 011113 72 TSKRT-ILSDLITVYAK--GGKTIVFTQTKRDADEVSLALTSI------IASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (493)
Q Consensus 72 ~~k~~-~l~~ll~~~~~--~~~~IVF~~t~~~~~~l~~~L~~~------~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLV 142 (493)
.-|.. ++..++..+.. ..++||.+++...+.++...+... .....+++... ...++.+.++...+++
T Consensus 35 sGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~ 110 (201)
T smart00487 35 SGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLESGKTDILV 110 (201)
T ss_pred CchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHhcCCCCEEE
Confidence 34655 33333343333 368999999999999888877642 22344555433 2333444555558999
Q ss_pred ecc-----ccccc-CCCCCccEEE
Q 011113 143 ATD-----VAARG-LDIPNVDLII 160 (493)
Q Consensus 143 aT~-----~~~~G-idip~v~~VI 160 (493)
+|. ..... ++...+.++|
T Consensus 111 ~t~~~l~~~~~~~~~~~~~~~~iI 134 (201)
T smart00487 111 TTPGRLLDLLENDLLELSNVDLVI 134 (201)
T ss_pred eChHHHHHHHHcCCcCHhHCCEEE
Confidence 983 22222 3555565555
No 277
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=57.51 E-value=1.4e+02 Score=32.58 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=39.7
Q ss_pred EEEEEeecCccccCCcchhhHHHHhhhhcCcCcCccccEEEeeccccceeEeec-CHHHHHHHHhhcCC---CCCceeee
Q 011113 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDL-PEEIAKELLNKQIP---PGNTISKI 362 (493)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~~~~gs~fdv-p~~~a~~~~~~~~~---~~~~i~~~ 362 (493)
.+|+|..= ...++..+|..++....+ .+|-+|.+..++ +||+. ..+.|++.++.++. .+..|.+.
T Consensus 234 k~LfVgNL----~~~~tee~L~~~F~~f~~---G~I~rV~~~rgf----AFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 234 KILYVRNL----MTTTTEEIIEKSFSEFKP---GKVERVKKIRDY----AFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred cEEEEeCC----CCCCCHHHHHHHHHhcCC---CceEEEEeecCe----EEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45666532 235778888888776511 245567776666 67777 34566666654333 34445554
Q ss_pred ccCCC
Q 011113 363 TKLPA 367 (493)
Q Consensus 363 ~~lP~ 367 (493)
-..|.
T Consensus 303 ~Akp~ 307 (578)
T TIGR01648 303 LAKPV 307 (578)
T ss_pred EccCC
Confidence 44443
No 278
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=57.29 E-value=40 Score=38.62 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=42.8
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc
Q 011113 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (493)
...++|.++|+..|.+.++.+.. ++.+.++.|+++..++...+ ..+|+|+|+-
T Consensus 135 g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y------~~DIVygTPg 192 (970)
T PRK12899 135 GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY------QCDVVYGTAS 192 (970)
T ss_pred cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECCC
Confidence 45688999999999999988864 36788899999988886554 2689999983
No 279
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=57.21 E-value=35 Score=29.78 Aligned_cols=82 Identities=20% Similarity=0.199 Sum_probs=51.5
Q ss_pred CcccHHHHHHHHHHH-HcCCCeEEEEeCChHHHHHHHHHHHcc-CceEEEeCCCCHHHHHHHHhcccCCCEEEEEe-ccc
Q 011113 70 TATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVA-TDV 146 (493)
Q Consensus 70 ~~~~k~~~l~~ll~~-~~~~~~~IVF~~t~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVa-T~~ 146 (493)
....+...+..|+.. +..+.+++|+|++.+.++.|-+.|-.. -....=|+-.... . .....|+|+ ++.
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~--------~-~~~~PV~l~~~~~ 80 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG--------P-AAGQPVLLTWPGK 80 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC--------C-CCCCCEEEEcCCC
Confidence 445677777777754 566889999999999999999998642 1222234421111 0 124578887 321
Q ss_pred ccccCCCCCccEEEeCCC
Q 011113 147 AARGLDIPNVDLIIHYEL 164 (493)
Q Consensus 147 ~~~Gidip~v~~VI~~~~ 164 (493)
.+.+..+++||.+.
T Consensus 81 ----~~~~~~~~LinL~~ 94 (142)
T PRK05728 81 ----RNANHRDLLINLDG 94 (142)
T ss_pred ----CCCCCCcEEEECCC
Confidence 23455678888764
No 280
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=55.42 E-value=18 Score=37.25 Aligned_cols=81 Identities=19% Similarity=0.242 Sum_probs=57.0
Q ss_pred EEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCC--CEEEE
Q 011113 65 YAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG--KFTVL 141 (493)
Q Consensus 65 ~~~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g--~~~iL 141 (493)
.|+..+...-..+..+|-..+ ..+-+|||.+-...+..-...|.. .+++..|.+.|+..+|.+++-++..- .+++|
T Consensus 39 VyVsMPTGaGKSLCyQLPaL~-~~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~L 117 (641)
T KOG0352|consen 39 VYVSMPTGAGKSLCYQLPALV-HGGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKML 117 (641)
T ss_pred EEEeccCCCchhhhhhchHHH-hCCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEE
Confidence 344444333223333333333 346899999998887766666664 78999999999999999999998764 57888
Q ss_pred Eeccc
Q 011113 142 VATDV 146 (493)
Q Consensus 142 VaT~~ 146 (493)
--|+-
T Consensus 118 YITPE 122 (641)
T KOG0352|consen 118 YITPE 122 (641)
T ss_pred EEchh
Confidence 87763
No 281
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=54.39 E-value=5.6 Score=43.69 Aligned_cols=15 Identities=53% Similarity=1.460 Sum_probs=14.7
Q ss_pred cccCCCCCcccCCCC
Q 011113 478 CFNCGKSGHRASECP 492 (493)
Q Consensus 478 c~~c~~~gh~~~~c~ 492 (493)
||-||+.||.+.||.
T Consensus 263 C~~cgq~gh~~~dc~ 277 (931)
T KOG2044|consen 263 CFLCGQTGHEAKDCE 277 (931)
T ss_pred chhhcccCCcHhhcC
Confidence 999999999999997
No 282
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=52.60 E-value=52 Score=37.22 Aligned_cols=53 Identities=11% Similarity=0.116 Sum_probs=43.6
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCC-HHHHHHHHhcccCCCEEEEEecc
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDIS-QHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~-~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
.+..++|.++|...|.+.++.+.. ++.+..+.++++ ..+|..+.. .+|+++|+
T Consensus 118 ~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y~------~dIvygT~ 176 (790)
T PRK09200 118 EGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIYE------ADIIYTTN 176 (790)
T ss_pred cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhcC------CCEEEECC
Confidence 578999999999999988887763 478999999999 888775543 67999995
No 283
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=51.82 E-value=80 Score=28.90 Aligned_cols=87 Identities=21% Similarity=0.285 Sum_probs=49.8
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCc--eEEeccccccccccceEEEEEEcCcc----cHH
Q 011113 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL--NIDLVGNQDEKLAEGIKLYAISTTAT----SKR 75 (493)
Q Consensus 2 L~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~--~i~~~~~~~~~~~~~i~~~~~~~~~~----~k~ 75 (493)
+|-||.+-++.|-.+ +.+++.+|+-|.+-|..+...+..... .++++.... ....+-++..+..... .|.
T Consensus 74 Idp~fKef~e~ike~---di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~-~ih~dg~h~i~~~~ds~fG~dK~ 149 (220)
T COG4359 74 IDPGFKEFVEWIKEH---DIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNND-YIHIDGQHSIKYTDDSQFGHDKS 149 (220)
T ss_pred cCccHHHHHHHHHHc---CCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCc-eEcCCCceeeecCCccccCCCcc
Confidence 455666666666543 688999999999999999998875432 344443222 2222223333322221 344
Q ss_pred HHHHHHHHHHcCCCeEEEEeC
Q 011113 76 TILSDLITVYAKGGKTIVFTQ 96 (493)
Q Consensus 76 ~~l~~ll~~~~~~~~~IVF~~ 96 (493)
.++.. +.++...++||-
T Consensus 150 ~vI~~----l~e~~e~~fy~G 166 (220)
T COG4359 150 SVIHE----LSEPNESIFYCG 166 (220)
T ss_pred hhHHH----hhcCCceEEEec
Confidence 44443 334445588874
No 284
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=50.94 E-value=1.2e+02 Score=33.58 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=69.0
Q ss_pred cCcccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHccCc---eEEE--------------------eCCC--C-
Q 011113 69 TTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIA---SEAL--------------------HGDI--S- 122 (493)
Q Consensus 69 ~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~---~~~l--------------------hg~~--~- 122 (493)
+....|.-++..+++.. +.++||.+++...|+.++..|...++ +..+ +-.. +
T Consensus 40 l~gs~ka~lia~l~~~~--~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~~~ 117 (652)
T PRK05298 40 VTGSGKTFTMANVIARL--QRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINE 117 (652)
T ss_pred CCCcHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCCCh
Confidence 44556776777666553 46899999999999999999975321 3333 1111 1
Q ss_pred --HHHHHHHHhcccCCCEEEEEecccccccCCCCC----ccEEEeCCCCCChhHHHHHhh
Q 011113 123 --QHQRERTLNGFRQGKFTVLVATDVAARGLDIPN----VDLIIHYELPNDPETFVHRSG 176 (493)
Q Consensus 123 --~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~----v~~VI~~~~p~~~~~y~qr~G 176 (493)
..+|..++..+..++..|+|+|-.+...+--|+ ..+.+..+-..+.+.++.+.-
T Consensus 118 ~~~~~R~~~l~~L~~~~~~ivv~s~~al~~~~~~~~~~~~~~~l~~G~~i~~~~l~~~L~ 177 (652)
T PRK05298 118 EIERLRHSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLSLRVGQEIDRRELLRRLV 177 (652)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEcHHHhcCCCCHHHHHhceEEEeCCCCcCHHHHHHHHH
Confidence 457888898888776667777755445554333 334566666777777766554
No 285
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=50.78 E-value=78 Score=28.72 Aligned_cols=65 Identities=9% Similarity=0.153 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCCC-eEEEEeCChHHHHHHHHHHHcc---CceEEEeCCCCHHHHHHHHhcccCCCEE
Q 011113 75 RTILSDLITVYAKGG-KTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFT 139 (493)
Q Consensus 75 ~~~l~~ll~~~~~~~-~~IVF~~t~~~~~~l~~~L~~~---~~~~~lhg~~~~~~r~~~~~~F~~g~~~ 139 (493)
.+++..+++.....+ ++-++-.+...++.+++.|++. +.+...|+-+++++.+.+++..+....+
T Consensus 34 ~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~d 102 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAG 102 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCC
Confidence 455666666554444 5555556667778888888853 4555568999888777777776654433
No 286
>PRK00254 ski2-like helicase; Provisional
Probab=50.05 E-value=38 Score=38.12 Aligned_cols=68 Identities=24% Similarity=0.342 Sum_probs=48.3
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-----ccc-cCCCCCc
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR-GLDIPNV 156 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-----~~~-Gidip~v 156 (493)
.+.++|+.+|+++.+.+.++.+.. ++.+..++|+.+...+ .+ +..+|+|+|+- +.. ...+.++
T Consensus 67 ~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~--~~-----~~~~IiV~Tpe~~~~ll~~~~~~l~~l 139 (720)
T PRK00254 67 EGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE--WL-----GKYDIIIATAEKFDSLLRHGSSWIKDV 139 (720)
T ss_pred cCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh--hh-----ccCCEEEEcHHHHHHHHhCCchhhhcC
Confidence 467999999999999999987763 4778899999875432 11 35689999952 211 1335678
Q ss_pred cEEEe
Q 011113 157 DLIIH 161 (493)
Q Consensus 157 ~~VI~ 161 (493)
.+||.
T Consensus 140 ~lvVi 144 (720)
T PRK00254 140 KLVVA 144 (720)
T ss_pred CEEEE
Confidence 88773
No 287
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=49.61 E-value=1.4e+02 Score=34.94 Aligned_cols=84 Identities=17% Similarity=0.309 Sum_probs=55.7
Q ss_pred HHHHHHhc--ccCCCEEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCC--C-CcceEEEecChhhHHHH
Q 011113 125 QRERTLNG--FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA--G-KEGTAILMFTSSQRRTV 199 (493)
Q Consensus 125 ~r~~~~~~--F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~--g-~~g~~i~l~~~~e~~~~ 199 (493)
.+.....+ +++...+|||.+|.+-.|.|-|.++.+. .|-|.---..+|-+.||.|. + ++.-.|+.+.......-
T Consensus 579 ~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~gl~e~l~ 657 (962)
T COG0610 579 EKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRGLKEALK 657 (962)
T ss_pred HHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcchHHHHH
Confidence 33444455 3456789999999999999999887654 46667777899999999994 3 23333333433444455
Q ss_pred HHHHHHhCCC
Q 011113 200 RSLERDVGCK 209 (493)
Q Consensus 200 ~~l~~~~~~~ 209 (493)
+.+.-+....
T Consensus 658 ~Al~~Y~~~~ 667 (962)
T COG0610 658 KALKLYSNEG 667 (962)
T ss_pred HHHHHhhccc
Confidence 5555554433
No 288
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=49.26 E-value=4.2e+02 Score=29.56 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=46.2
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-cC-------ceEEEeCCCCHHHHHHHHhccc----CCCEEEEEec--ccccccCCC
Q 011113 88 GGKTIVFTQTKRDADEVSLALTS-II-------ASEALHGDISQHQRERTLNGFR----QGKFTVLVAT--DVAARGLDI 153 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-~~-------~~~~lhg~~~~~~r~~~~~~F~----~g~~~iLVaT--~~~~~Gidi 153 (493)
++-++||+++.+-...+.+.+.. ++ +.+.+-..-+ -+.+++.|. .+.-.||+|- --+++|||+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 47899999999988888887763 21 1122222222 234555554 2443466553 568899999
Q ss_pred CC--ccEEEeCCCCC
Q 011113 154 PN--VDLIIHYELPN 166 (493)
Q Consensus 154 p~--v~~VI~~~~p~ 166 (493)
.| ...||-.++|.
T Consensus 706 ~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPY 720 (821)
T ss_pred ccccccEEEEeecCC
Confidence 75 34677666664
No 289
>PF12353 eIF3g: Eukaryotic translation initiation factor 3 subunit G ; InterPro: IPR024675 At least eleven different protein factors are involved in initiation of protein synthesis in eukaryotes. Binding of initiator tRNA and mRNA to the 40S subunit requires the presence of the translation initiation factors eIF-2 and eIF-3, with eIF-3 being particularly important for 80S ribosome dissociation and mRNA binding []. eIF-3 is the most complex translation inititation factor, consisting of about 13 putative subunits and having a molecular weight of between 550 - 700 kDa in mammalian cells. Subunits are designated eIF-3a - eIF-3m; the large number of subunits means that the interactions between the individual subunits that make up the eIF-3 complex are complex and varied. Subunit G is required for eIF3 integrity. This entry represents a domain of approximately 130 amino acids in length found at the N terminus of eukaryotic translation initiation factor 3 subunit G. This domain is commonly found in association with the RNA recognition domain PF00076 from PFAM.
Probab=49.07 E-value=8.8 Score=32.90 Aligned_cols=16 Identities=38% Similarity=0.877 Sum_probs=14.1
Q ss_pred ccccCCCCCcccCCCCC
Q 011113 477 ACFNCGKSGHRASECPN 493 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~~ 493 (493)
.|..|+ --||..-||.
T Consensus 108 ~CR~Ck-GdH~T~~CPy 123 (128)
T PF12353_consen 108 KCRICK-GDHWTSKCPY 123 (128)
T ss_pred EeCCCC-CCcccccCCc
Confidence 699997 7799999993
No 290
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=48.75 E-value=74 Score=28.58 Aligned_cols=68 Identities=10% Similarity=0.179 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCC-CeEEEEeCChHHHHHHHHHHHccC---ceE-EEeCCCCHHHHHHHHhcccCCCEEEEE
Q 011113 75 RTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSII---ASE-ALHGDISQHQRERTLNGFRQGKFTVLV 142 (493)
Q Consensus 75 ~~~l~~ll~~~~~~-~~~IVF~~t~~~~~~l~~~L~~~~---~~~-~lhg~~~~~~r~~~~~~F~~g~~~iLV 142 (493)
.+++..+++..... .++-++-.+.+.++.++..|++.+ .+. ..|+-++..+.+.+++..+....+||+
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~ 106 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVF 106 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 44555566554444 455555566777788888888643 344 556778888889999887765544443
No 291
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=48.48 E-value=56 Score=31.51 Aligned_cols=69 Identities=19% Similarity=0.292 Sum_probs=45.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHcc----CceEEEeC-CCCHHHHHHHHhcccCCCEEEEEecc-----c-ccccCCCCCcc
Q 011113 89 GKTIVFTQTKRDADEVSLALTSI----IASEALHG-DISQHQRERTLNGFRQGKFTVLVATD-----V-AARGLDIPNVD 157 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~~----~~~~~lhg-~~~~~~r~~~~~~F~~g~~~iLVaT~-----~-~~~Gidip~v~ 157 (493)
..+||+|.+--.|-.|...|... ..+.-|.+ .+.-++....++ ...+.|.|+|+ + -.-.+.+.++.
T Consensus 127 P~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~---~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 127 PHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLK---KTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHH---hCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 47899999988888998888753 33443433 244555555554 45788999998 2 23346667777
Q ss_pred EEE
Q 011113 158 LII 160 (493)
Q Consensus 158 ~VI 160 (493)
+||
T Consensus 204 ~iv 206 (252)
T PF14617_consen 204 RIV 206 (252)
T ss_pred EEE
Confidence 666
No 292
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=48.05 E-value=23 Score=34.51 Aligned_cols=8 Identities=38% Similarity=0.501 Sum_probs=4.5
Q ss_pred EEEEEecc
Q 011113 138 FTVLVATD 145 (493)
Q Consensus 138 ~~iLVaT~ 145 (493)
+-+||+++
T Consensus 101 vLLlVa~~ 108 (271)
T COG1512 101 VLLLVAMN 108 (271)
T ss_pred EEEEEEcC
Confidence 44666654
No 293
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=47.95 E-value=2.7e+02 Score=28.30 Aligned_cols=146 Identities=18% Similarity=0.184 Sum_probs=88.9
Q ss_pred EEEEeccCChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHHH-HcCCCeEEEEeCChHHH
Q 011113 23 SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDA 101 (493)
Q Consensus 23 ~ll~SAT~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~-~~~~~~~IVF~~t~~~~ 101 (493)
.|-++.|+++.-+..+...+. .. ..........+.-.-|.+.+.+.++. ++.+..+.|-.|..+.|
T Consensus 91 ~L~W~G~Ls~~Q~~as~~l~q------~i-------~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVc 157 (441)
T COG4098 91 VLQWKGTLSPGQKKASNQLVQ------YI-------KQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVC 157 (441)
T ss_pred eeeeccccChhHHHHHHHHHH------HH-------HhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccch
Confidence 677788887665554433221 00 11112334445556677777666644 35678999999999999
Q ss_pred HHHHHHHHc---cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc-ccccCCCCCccEEEe--C-CCCCChhHHHHH
Q 011113 102 DEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGLDIPNVDLIIH--Y-ELPNDPETFVHR 174 (493)
Q Consensus 102 ~~l~~~L~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~-~~~Gidip~v~~VI~--~-~~p~~~~~y~qr 174 (493)
-+|+..|+. ...+..||++-++.. + ..++|||.- +-|=- ...+++|. . .+|.+-+..+|-
T Consensus 158 lEl~~Rlk~aF~~~~I~~Lyg~S~~~f--------r---~plvVaTtHQLlrFk--~aFD~liIDEVDAFP~~~d~~L~~ 224 (441)
T COG4098 158 LELYPRLKQAFSNCDIDLLYGDSDSYF--------R---APLVVATTHQLLRFK--QAFDLLIIDEVDAFPFSDDQSLQY 224 (441)
T ss_pred HHHHHHHHHhhccCCeeeEecCCchhc--------c---ccEEEEehHHHHHHH--hhccEEEEeccccccccCCHHHHH
Confidence 999999986 356889999966543 3 467788752 22221 23344443 2 378888888888
Q ss_pred hhccCCCCCcceEEEecChh
Q 011113 175 SGRTGRAGKEGTAILMFTSS 194 (493)
Q Consensus 175 ~GR~gR~g~~g~~i~l~~~~ 194 (493)
+-+-+|.-.....|+-.+|.
T Consensus 225 Av~~ark~~g~~IylTATp~ 244 (441)
T COG4098 225 AVKKARKKEGATIYLTATPT 244 (441)
T ss_pred HHHHhhcccCceEEEecCCh
Confidence 87777743223333334443
No 294
>KOG2673 consensus Uncharacterized conserved protein, contains PSP domain [Function unknown]
Probab=46.60 E-value=9.8 Score=39.18 Aligned_cols=16 Identities=50% Similarity=1.367 Sum_probs=15.1
Q ss_pred cccCCCCCcccCCCCC
Q 011113 478 CFNCGKSGHRASECPN 493 (493)
Q Consensus 478 c~~c~~~gh~~~~c~~ 493 (493)
||||+..-|--||||.
T Consensus 131 CFNC~g~~hsLrdC~r 146 (485)
T KOG2673|consen 131 CFNCGGTPHSLRDCPR 146 (485)
T ss_pred ccccCCCCCccccCCC
Confidence 9999999999999994
No 295
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=46.02 E-value=1.6e+02 Score=29.47 Aligned_cols=166 Identities=14% Similarity=0.183 Sum_probs=77.9
Q ss_pred HHHHHHhCCCCCcEEEEecc-CChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHH--HHHc
Q 011113 10 VELILENLPPKRQSMLFSAT-MPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI--TVYA 86 (493)
Q Consensus 10 l~~Il~~~~~~~q~ll~SAT-~p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll--~~~~ 86 (493)
+++|.+.+.+...+++++.. ++....+-+++.++....+-+. + +......+.......+...-..++..+. ..+-
T Consensus 12 v~~l~~~l~~y~~v~Iv~~~nv~s~qlq~IR~~lrg~a~~~~G-K-Ntlm~~AL~~~~~~~~~~~~~~ll~~~~~~~~~l 89 (323)
T PTZ00240 12 EERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRALRGKAEFVMG-K-KTLQAKIVEKRAQAKKASAEAKLFNDQCEEKNLL 89 (323)
T ss_pred HHHHHHHHHhCCEEEEEEecCCCcHHHHHHHHHhhCCcEEEEe-c-HHHHHHHHhhccccccchhHHHHhhhhccccccc
Confidence 34444444445577777765 6766666666666654444332 1 1111111111110000000111211111 1233
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEE---eCC
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII---HYE 163 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI---~~~ 163 (493)
++...||||+. .-.+|.+.|.+ ++. ...+|.=++...++|| +..
T Consensus 90 ~GnvgliFTn~--~p~ev~~~l~~----------------------~k~---------~a~AraG~IAp~dVvvpaG~T~ 136 (323)
T PTZ00240 90 SGNTGLIFTNN--EVQEITSVLDS----------------------HRV---------KAPARVGAIAPCDVIVPAGSTG 136 (323)
T ss_pred cCCEEEEEeCC--CHHHHHHHHHH----------------------cCC---------cccccCCCCCCceEEECCCCCC
Confidence 56677888875 34455555543 221 1123333455556666 456
Q ss_pred CCCChhHHHHHhhccCCCCCcceEEEe-----cChhh--HHHHHHHHHHhCCCce
Q 011113 164 LPNDPETFVHRSGRTGRAGKEGTAILM-----FTSSQ--RRTVRSLERDVGCKFE 211 (493)
Q Consensus 164 ~p~~~~~y~qr~GR~gR~g~~g~~i~l-----~~~~e--~~~~~~l~~~~~~~~~ 211 (493)
++.+...+.|..|=.-+. ..|...+. +..-+ ......|.+.+++++-
T Consensus 137 ~~P~~~s~fq~LGIpTkI-~kGkIeI~~d~~v~k~Ge~V~~~~A~LL~~L~IkP~ 190 (323)
T PTZ00240 137 MEPTQTSFFQALNIATKI-AKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPF 190 (323)
T ss_pred CCCcchHHHHHcCCCeEe-cCcEEEEecCeEEecCCCCcCHHHHHHHHHcCCCeE
Confidence 666788999988865553 23443332 22211 1334455566666653
No 296
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=45.93 E-value=2e+02 Score=25.22 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=49.0
Q ss_pred HHHHHH-HHHcCCCeEEEEeCChHHHHHHHHHHHcc-CceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCC
Q 011113 77 ILSDLI-TVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (493)
Q Consensus 77 ~l~~ll-~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip 154 (493)
++..|+ +.+..+.|++|-|.+...++.|-+.|-.. -....=|+-.. +.... ...|+|++.- .-=+-+
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~~~~sFiPH~~~~--------e~~~~-~qPIli~~~~--~~pn~~ 85 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTFSAESFIPHNLAG--------EPPPA-GQPILIAWPG--GNPNSA 85 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhccchhcccCCccCC--------CCCCC-CCCEEEEcCC--CCCCCC
Confidence 566665 44567889999999999999999988532 12222343311 12222 3359998763 223456
Q ss_pred CccEEEeCCCC
Q 011113 155 NVDLIIHYELP 165 (493)
Q Consensus 155 ~v~~VI~~~~p 165 (493)
.++++||...+
T Consensus 86 ~~~~lInl~d~ 96 (144)
T COG2927 86 RVDLLINLADE 96 (144)
T ss_pred ceeEEEecccc
Confidence 77889986544
No 297
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=45.76 E-value=79 Score=28.77 Aligned_cols=43 Identities=9% Similarity=0.136 Sum_probs=21.2
Q ss_pred cchhhHHHHhhhhcCcCcCccccEEEeeccc-cceeEe--ecCHHHHHHHH
Q 011113 302 MSARSVMGFLSDVYPTAADEIGKIHIIADDR-VQGAVF--DLPEEIAKELL 349 (493)
Q Consensus 302 ~~~~~i~~~~~~~~~~~~~~ig~i~i~~~~~-~~gs~f--dvp~~~a~~~~ 349 (493)
+..++|-.++.+..+ |-.|++..... ..++|| +-|.+.-+.|-
T Consensus 18 iRekeieDlFyKyg~-----i~~ieLK~r~g~ppfafVeFEd~RDAeDAiy 63 (241)
T KOG0105|consen 18 IREKEIEDLFYKYGR-----IREIELKNRPGPPPFAFVEFEDPRDAEDAIY 63 (241)
T ss_pred hhhccHHHHHhhhcc-----eEEEEeccCCCCCCeeEEEecCccchhhhhh
Confidence 445566666666554 55566654332 122444 44554444433
No 298
>KOG2560 consensus RNA splicing factor - Slu7p [RNA processing and modification]
Probab=45.70 E-value=5.2 Score=41.06 Aligned_cols=15 Identities=47% Similarity=1.156 Sum_probs=14.4
Q ss_pred ccccCCCCCcccCCC
Q 011113 477 ACFNCGKSGHRASEC 491 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c 491 (493)
.|-|||..+|-.+||
T Consensus 114 ACeNCGAmtHk~KDC 128 (529)
T KOG2560|consen 114 ACENCGAMTHKVKDC 128 (529)
T ss_pred hhhhhhhhhcchHHH
Confidence 499999999999999
No 299
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=44.36 E-value=1.5e+02 Score=23.51 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=27.1
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHc-cCc-eEEEeCCCC
Q 011113 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (493)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (493)
.++.++||||.+-..+...+..|.. ++. +..|.|++.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 4567899999886666667777764 664 777888763
No 300
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=43.62 E-value=61 Score=29.61 Aligned_cols=8 Identities=13% Similarity=0.281 Sum_probs=3.7
Q ss_pred eEEEEEee
Q 011113 286 WVTLQLTR 293 (493)
Q Consensus 286 ~~~~~~~~ 293 (493)
++++.|+.
T Consensus 28 va~fsVAv 35 (182)
T PRK06958 28 VANIRLAT 35 (182)
T ss_pred EEEEEEEe
Confidence 44455543
No 301
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=43.61 E-value=55 Score=37.55 Aligned_cols=101 Identities=15% Similarity=0.221 Sum_probs=62.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHH----c---cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc-ccc----ccCC---
Q 011113 88 GGKTIVFTQTKRDADEVSLALT----S---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAA----RGLD--- 152 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~----~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-~~~----~Gid--- 152 (493)
..++|++.||++.++.=.+.|. . .+.+..++|+.++++|+.++.. ..+||++|+ ++. +..|
T Consensus 115 ~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~----pp~IllTNpdMLh~~llr~~~~~~ 190 (851)
T COG1205 115 SARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRN----PPDILLTNPDMLHYLLLRNHDAWL 190 (851)
T ss_pred CccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhC----CCCEEEeCHHHHHHHhccCcchHH
Confidence 3577999999987765444443 3 2578899999999999855554 788999985 222 1111
Q ss_pred --CCCccEEEe-----CC--CCCChhHHHHHhhccCCCCCcceEEEecC
Q 011113 153 --IPNVDLIIH-----YE--LPNDPETFVHRSGRTGRAGKEGTAILMFT 192 (493)
Q Consensus 153 --ip~v~~VI~-----~~--~p~~~~~y~qr~GR~gR~g~~g~~i~l~~ 192 (493)
..++.+||. |. +=.++...+-|.-|-.|.......++..+
T Consensus 191 ~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~S 239 (851)
T COG1205 191 WLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTS 239 (851)
T ss_pred HHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEe
Confidence 233555552 22 12356666777776665443334444433
No 302
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=43.35 E-value=1.1e+02 Score=27.55 Aligned_cols=67 Identities=12% Similarity=0.232 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHcc---CceEE-EeCCCCHHHHHHHHhcccCCCEEEE
Q 011113 75 RTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTSI---IASEA-LHGDISQHQRERTLNGFRQGKFTVL 141 (493)
Q Consensus 75 ~~~l~~ll~~~~~-~~~~IVF~~t~~~~~~l~~~L~~~---~~~~~-lhg~~~~~~r~~~~~~F~~g~~~iL 141 (493)
.+++..+++.... +.++-++-.+.+.++.+++.|++. +.+.. .|+-+...+...+++..+....+||
T Consensus 32 ~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv 103 (171)
T cd06533 32 SDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADIL 103 (171)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEE
Confidence 3455566665543 456666667777888888888863 44444 6778877777767777665444433
No 303
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=43.04 E-value=73 Score=28.71 Aligned_cols=121 Identities=21% Similarity=0.225 Sum_probs=59.0
Q ss_pred cHHHHHHHHHHhCC-CCCcEEEEeccC-ChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHH
Q 011113 5 GFEEDVELILENLP-PKRQSMLFSATM-PSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 82 (493)
Q Consensus 5 GF~~~l~~Il~~~~-~~~q~ll~SAT~-p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll 82 (493)
.|-+++..||+.+. ...++.+.|-|- |++.+++++.+.-+..... ......-... ...-+..|..-+..+.
T Consensus 45 ~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~-----~~~~~~~F~~--~eI~~gsK~~Hf~~i~ 117 (169)
T PF12689_consen 45 SLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGD-----GVPLIEYFDY--LEIYPGSKTTHFRRIH 117 (169)
T ss_dssp ---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C---------------CCECE--EEESSS-HHHHHHHHH
T ss_pred EeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccc-----cccchhhcch--hheecCchHHHHHHHH
Confidence 47788889988886 477888888774 6677777765432300000 0011122222 2233347777777777
Q ss_pred HHHcCC-CeEEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccC
Q 011113 83 TVYAKG-GKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ 135 (493)
Q Consensus 83 ~~~~~~-~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~ 135 (493)
+...-. ..+|.|=+-...++.+.. -+..+.....+|+.+.=++-+++|++
T Consensus 118 ~~tgI~y~eMlFFDDe~~N~~~v~~---lGV~~v~v~~Glt~~~~~~gL~~~~~ 168 (169)
T PF12689_consen 118 RKTGIPYEEMLFFDDESRNIEVVSK---LGVTCVLVPDGLTWDEFERGLEKFRK 168 (169)
T ss_dssp HHH---GGGEEEEES-HHHHHHHHT---TT-EEEE-SSS--HHHHHHHHHHHHH
T ss_pred HhcCCChhHEEEecCchhcceeeEe---cCcEEEEeCCCCCHHHHHHHHHHHhh
Confidence 655333 345555555555554332 25555666678999888888888764
No 304
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=42.51 E-value=92 Score=27.59 Aligned_cols=82 Identities=13% Similarity=0.134 Sum_probs=51.4
Q ss_pred CcccHHHHHHHHHHH-HcCCCeEEEEeCChHHHHHHHHHHHccC-ceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc
Q 011113 70 TATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSII-ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (493)
Q Consensus 70 ~~~~k~~~l~~ll~~-~~~~~~~IVF~~t~~~~~~l~~~L~~~~-~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~ 147 (493)
....+...+..|+.. +..+.+++|.|++.+.++.|-+.|=..- ....=|+-..... .....|+|+++.
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~~~~~~---------~a~~PV~L~~~~- 79 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGSKLDPQ---------PEKQPIYITDEL- 79 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCCCCCCC---------CCCCCEEEecCC-
Confidence 556788888888754 5677899999999999999988885421 1222344211110 124568887542
Q ss_pred cccCCCCCccEEEeCCC
Q 011113 148 ARGLDIPNVDLIIHYEL 164 (493)
Q Consensus 148 ~~Gidip~v~~VI~~~~ 164 (493)
-+.+..+++||.+.
T Consensus 80 ---~~p~~~~vLiNL~~ 93 (154)
T PRK06646 80 ---QNPNNASVLVIISP 93 (154)
T ss_pred ---CCCCCCCEEEECCC
Confidence 12235567888765
No 305
>PF12614 RRF_GI: Ribosome recycling factor ; InterPro: IPR022253 This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 130 amino acids in length. There are two conserved sequence motifs: LPS and LKR. Overproduction of ribosome recycling factor (RRF) reduces tna operon expression and increases the rate of cleavage of TnaC-tRNA(2)(Pro), relieving the growth inhibition associated with plasmid-mediated tnaC overexpression.
Probab=42.10 E-value=87 Score=26.71 Aligned_cols=85 Identities=19% Similarity=0.338 Sum_probs=39.1
Q ss_pred ChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCCCHHHHH--HHHHHHHHHHhcCCCccchhhh
Q 011113 167 DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL--ESSAEQVVATLNGVHPESVEFF 244 (493)
Q Consensus 167 ~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 244 (493)
+..+++||+|+.. .+.++.+....+..++++.-.-.-.+. ...+..+.+.++......+.+.
T Consensus 8 ~LpSlIHRig~~~----------------~k~~ka~A~q~~CeLKRVRRSRnWql~Ge~~~l~~~~~~lk~~~~~~~~~l 71 (128)
T PF12614_consen 8 PLPSLIHRIGREA----------------VKQAKALARQHGCELKRVRRSRNWQLSGEADQLQSFLDQLKAEDYEEFQFL 71 (128)
T ss_pred ccHHHHHHhhHHH----------------HHHHHHHHHHhCchHHHHHHhhhhHHhhhHHHHHHHHHHHHhcchHHHHHH
Confidence 4678999999842 234444445555444443222211111 1233444455544444444444
Q ss_pred HHHHHHHHhhhC--HHHHHHHHHHH
Q 011113 245 TPTAQRLIEEKG--TDALAAALAQL 267 (493)
Q Consensus 245 ~~~~~~l~~~~~--~~~l~aal~~~ 267 (493)
...++.-+..+. .|-+...|+.|
T Consensus 72 i~kie~~L~~~~dkle~l~~~L~~L 96 (128)
T PF12614_consen 72 IKKIEAALLQHSDKLEPLEDKLARL 96 (128)
T ss_pred HHHHHHHhcccccccchHHHHHHHH
Confidence 444444433222 23444444444
No 306
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=41.65 E-value=39 Score=26.15 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=29.2
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-cCc-eEEEeCCCC
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (493)
+..++||||.+-..+..++..|.. ++. +..|.|++.
T Consensus 55 ~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 55 KDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 457899999998888888888875 555 888888874
No 307
>COG1204 Superfamily II helicase [General function prediction only]
Probab=40.88 E-value=74 Score=36.00 Aligned_cols=79 Identities=25% Similarity=0.350 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcC-CCeEEEEeCChHHHHHHHHHHH---c-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc----
Q 011113 75 RTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALT---S-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD---- 145 (493)
Q Consensus 75 ~~~l~~ll~~~~~-~~~~IVF~~t~~~~~~l~~~L~---~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~---- 145 (493)
+-++..+++.+.+ +.++|-.||++..|++.++.++ . ++++..++|+++... +.+ .+.+|||+|.
T Consensus 62 lIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~-~~l------~~~~ViVtT~EK~D 134 (766)
T COG1204 62 LIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDD-ERL------ARYDVIVTTPEKLD 134 (766)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccch-hhh------ccCCEEEEchHHhh
Confidence 3344445555544 4799999999999999999998 2 689999999986443 111 2568999996
Q ss_pred cccccC-C-CCCccEEE
Q 011113 146 VAARGL-D-IPNVDLII 160 (493)
Q Consensus 146 ~~~~Gi-d-ip~v~~VI 160 (493)
++-|-- + +.+|++||
T Consensus 135 sl~R~~~~~~~~V~lvV 151 (766)
T COG1204 135 SLTRKRPSWIEEVDLVV 151 (766)
T ss_pred HhhhcCcchhhcccEEE
Confidence 233321 1 24677766
No 308
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=40.56 E-value=1.1e+02 Score=34.98 Aligned_cols=60 Identities=12% Similarity=0.101 Sum_probs=47.1
Q ss_pred HHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011113 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
..++..+ .+..+-|.++|...|.+.++.+.. ++.+..+.++++..+|..+++ .+|+++|+
T Consensus 114 pa~l~aL-~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~ 178 (830)
T PRK12904 114 PAYLNAL-TGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA------ADITYGTN 178 (830)
T ss_pred HHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC------CCeEEECC
Confidence 3334444 456788999999999888887763 478899999999999988864 67999997
No 309
>PF13245 AAA_19: Part of AAA domain
Probab=40.05 E-value=54 Score=25.10 Aligned_cols=40 Identities=30% Similarity=0.386 Sum_probs=29.2
Q ss_pred cCcccHHHHHHHHHHHHc-C----CCeEEEEeCChHHHHHHHHHH
Q 011113 69 TTATSKRTILSDLITVYA-K----GGKTIVFTQTKRDADEVSLAL 108 (493)
Q Consensus 69 ~~~~~k~~~l~~ll~~~~-~----~~~~IVF~~t~~~~~~l~~~L 108 (493)
.+-.-|..++..++..+. . +.+++|.++|+..+++|.+.|
T Consensus 18 ~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 18 PPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 455667755555554432 1 678999999999999999988
No 310
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=39.48 E-value=3e+02 Score=26.50 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=37.4
Q ss_pred EEEEcCcccHHHHHHHHHHHHcCCCeEEEEe-CChHHHHHHHHHHHc-cCceEEEe
Q 011113 65 YAISTTATSKRTILSDLITVYAKGGKTIVFT-QTKRDADEVSLALTS-IIASEALH 118 (493)
Q Consensus 65 ~~~~~~~~~k~~~l~~ll~~~~~~~~~IVF~-~t~~~~~~l~~~L~~-~~~~~~lh 118 (493)
=.+.+...+|-++|..++.......+.|||+ .+.+.+..+.+.+.. .+...-+|
T Consensus 154 GIlft~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~ 209 (252)
T PF11019_consen 154 GILFTGGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFH 209 (252)
T ss_pred CeEEeCCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEE
Confidence 3455667789999999998876656666666 566677888777774 55444444
No 311
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=39.24 E-value=92 Score=31.09 Aligned_cols=68 Identities=18% Similarity=0.266 Sum_probs=43.9
Q ss_pred CeEEEEeCChHHHHHH---HHHHHc--cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc-----cccccC-CCCCcc
Q 011113 89 GKTIVFTQTKRDADEV---SLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGL-DIPNVD 157 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l---~~~L~~--~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~~~Gi-dip~v~ 157 (493)
-++||.++|++.|-+. +..|.+ ++.+.+..|+.+-. +.++.- +..+.++|+|+ .+..|+ |+.++.
T Consensus 154 IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lr--DDI~Rl--~~~VH~~vgTPGRIlDL~~KgVa~ls~c~ 229 (459)
T KOG0326|consen 154 IQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLR--DDIMRL--NQTVHLVVGTPGRILDLAKKGVADLSDCV 229 (459)
T ss_pred eeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccc--cceeee--cCceEEEEcCChhHHHHHhcccccchhce
Confidence 4789999999977654 455555 46677888887543 333322 34788999997 455554 344444
Q ss_pred EEE
Q 011113 158 LII 160 (493)
Q Consensus 158 ~VI 160 (493)
.+|
T Consensus 230 ~lV 232 (459)
T KOG0326|consen 230 ILV 232 (459)
T ss_pred EEE
Confidence 444
No 312
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.16 E-value=16 Score=38.01 Aligned_cols=21 Identities=24% Similarity=0.607 Sum_probs=18.2
Q ss_pred CCCCccccCCCCCcccCCCCC
Q 011113 473 SFGGACFNCGKSGHRASECPN 493 (493)
Q Consensus 473 ~~~~~c~~c~~~gh~~~~c~~ 493 (493)
..+..|++|+++|||..-||.
T Consensus 156 ppsy~c~rc~~~g~wikacpt 176 (448)
T KOG0314|consen 156 PPSYKCVKCPTPGPWIKACPT 176 (448)
T ss_pred CCCcceecCCCCCccceeccc
Confidence 455679999999999999994
No 313
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=38.64 E-value=5.5e+02 Score=28.31 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=18.8
Q ss_pred cccHHHHHHHHHHHHcC--CCeEEEEeCChHHHHHHHH
Q 011113 71 ATSKRTILSDLITVYAK--GGKTIVFTQTKRDADEVSL 106 (493)
Q Consensus 71 ~~~k~~~l~~ll~~~~~--~~~~IVF~~t~~~~~~l~~ 106 (493)
-.-|..++..+...... ....++|++..+.+..+..
T Consensus 324 GsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~ 361 (617)
T PRK14086 324 GLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFIN 361 (617)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHH
Confidence 34566666655544321 2445667766655544433
No 314
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=38.61 E-value=71 Score=24.95 Aligned_cols=42 Identities=14% Similarity=0.242 Sum_probs=31.1
Q ss_pred HHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cC-ceEEEeCCC
Q 011113 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 121 (493)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~-~~~~lhg~~ 121 (493)
..+..+.+..++||+|.+-..+..++..|.. ++ .+..+.|++
T Consensus 48 ~~~~~~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~ 91 (96)
T cd01444 48 DWLGDLDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGF 91 (96)
T ss_pred HHHhhcCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCH
Confidence 3444455678999999988888888888875 55 466777775
No 315
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=38.59 E-value=77 Score=27.59 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cC-ceEEEeCCCC
Q 011113 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (493)
Q Consensus 77 ~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~-~~~~lhg~~~ 122 (493)
.|...+..+.+..++||+|.+-..+..++..|.. ++ .+..|.|++.
T Consensus 38 ~l~~~l~~l~~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~ 85 (145)
T cd01535 38 QLAQALEKLPAAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA 85 (145)
T ss_pred HHHHHHHhcCCCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence 3444455555567899999998888888878874 44 7889999973
No 316
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=38.33 E-value=66 Score=29.60 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=42.6
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHccCceEEEeCCCCHH--------HHHHHHhcccCCCE-EEEEeccccccc
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQH--------QRERTLNGFRQGKF-TVLVATDVAARG 150 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~--------~r~~~~~~F~~g~~-~iLVaT~~~~~G 150 (493)
.+..+|..+.+.+++..+.+.-.-.=.-.+|||.+++- .-...+++..++.+ .|++||+....|
T Consensus 77 Rd~~~icVVe~p~Dv~a~E~~~~f~G~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnpTvEG 149 (198)
T COG0353 77 RDKSQLCVVEEPKDVLALEKTGEFRGLYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNPTVEG 149 (198)
T ss_pred cCCceEEEEcchHHHHHHHHhcccCeeEEEecCccCcccCCCcccccHHHHHHHHhcCCCceEEEecCCCccc
Confidence 34678888998888877655432112245567655533 33667778888888 899999865554
No 317
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=38.22 E-value=66 Score=30.78 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc
Q 011113 73 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 110 (493)
Q Consensus 73 ~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~ 110 (493)
.++.....++..+...+..|.|+.|+..+.+......+
T Consensus 48 ~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~~~A~ 85 (252)
T COG0052 48 ERLREAYKFLRRIAANGGKILFVGTKKQAQEPVKEFAE 85 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHH
Confidence 34444555666666668889999999999887776654
No 318
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=37.70 E-value=1.2e+02 Score=35.26 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=53.6
Q ss_pred CEEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCC-----C----Ccce-EEEecChhhHHHHHHHHHHh
Q 011113 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA-----G----KEGT-AILMFTSSQRRTVRSLERDV 206 (493)
Q Consensus 137 ~~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~-----g----~~g~-~i~l~~~~e~~~~~~l~~~~ 206 (493)
..+.|++-+++..|.|-|+|-.++-..-..+...-.|.+||.-|. | .... -.++++..+..+.+.|.+.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 678999999999999999999998888888888899999998883 2 1122 22345666666777766655
No 319
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=37.69 E-value=32 Score=38.00 Aligned_cols=76 Identities=22% Similarity=0.337 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHH-cCCCeEEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccC---CCEEEEEecccccc
Q 011113 74 KRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ---GKFTVLVATDVAAR 149 (493)
Q Consensus 74 k~~~l~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~---g~~~iLVaT~~~~~ 149 (493)
|..+|..+++.+ ....+++||..-....+.+..++........+.|..+-.+|+.++++|.. ..+-.|++|.+-+.
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~ 695 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGL 695 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccCcceeccCCccchhhhhhccccCCCCccceEEEeecccccC
Confidence 445555555444 45679999999999999998888853377889999999999999999983 45778899976543
No 320
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=36.00 E-value=1.4e+02 Score=22.39 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=27.9
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHc-c-CceEEEeCCC
Q 011113 86 AKGGKTIVFTQTKRDADEVSLALTS-I-IASEALHGDI 121 (493)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~-~~~~~lhg~~ 121 (493)
.+..++||||.+...+..++..|.. + ..+..|-|++
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~ 85 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGM 85 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCCh
Confidence 4568999999998888888888885 3 4566777765
No 321
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=35.26 E-value=95 Score=24.69 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=28.0
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-cC-ceEEEeCCCCH
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDISQ 123 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~-~~~~lhg~~~~ 123 (493)
+..+++|||++-..+...+..|.+ ++ .+..|.|++..
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~ 95 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDA 95 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHH
Confidence 467999999997777777777775 55 47788888643
No 322
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=35.19 E-value=72 Score=35.98 Aligned_cols=71 Identities=18% Similarity=0.302 Sum_probs=56.0
Q ss_pred CEEEEEecccccccCCCCCccEEEeCCCCCChhHHHHHhhccCCC--CCcce-----------EEEecChhhHHHHHHHH
Q 011113 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA--GKEGT-----------AILMFTSSQRRTVRSLE 203 (493)
Q Consensus 137 ~~~iLVaT~~~~~Gidip~v~~VI~~~~p~~~~~y~qr~GR~gR~--g~~g~-----------~i~l~~~~e~~~~~~l~ 203 (493)
-.+.|.+-.++-.|.|=|+|=.++-.....|..+=+|.+||.-|- ...|. -.+++...+..+++.|.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 367999999999999999999999998888999999999999882 23333 23456677777777776
Q ss_pred HHhC
Q 011113 204 RDVG 207 (493)
Q Consensus 204 ~~~~ 207 (493)
+.+.
T Consensus 563 kEI~ 566 (985)
T COG3587 563 KEIN 566 (985)
T ss_pred HHHH
Confidence 6553
No 323
>PF02445 NadA: Quinolinate synthetase A protein; InterPro: IPR003473 Quinolinate synthetase catalyzes the second step of the de novo biosynthetic pathway of pyridine nucleotide formation. In particular, quinolinate synthetase is involved in the condensation of dihydroxyacetone phosphate and iminoaspartate to form quinolinic acid []. This synthesis requires two enzymes, an FAD-containing "B protein" and an "A protein".; GO: 0008987 quinolinate synthetase A activity, 0009435 NAD biosynthetic process; PDB: 2QS0_A 1WZU_A.
Probab=35.18 E-value=3.5e+02 Score=26.75 Aligned_cols=91 Identities=16% Similarity=0.165 Sum_probs=44.4
Q ss_pred hHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHcc
Q 011113 32 SWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI 111 (493)
Q Consensus 32 ~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~ 111 (493)
..+.++.++| .+...|.++...-.. .. +--+++...+-..+ ++.+ +..+-|+|+|.+.....+.+.+.+.
T Consensus 89 ~~v~~~k~~~-p~~~vV~YVNssAev-KA---~sdi~cTSsNA~kI----v~~l-~~~~~IlF~PD~nLG~~v~~~~~k~ 158 (296)
T PF02445_consen 89 EDVRELKEEY-PDAAVVTYVNSSAEV-KA---ESDICCTSSNAVKI----VRSL-PQDKKILFLPDKNLGRYVARQTGKN 158 (296)
T ss_dssp HHHHHHHHHS-TTS-EEEESSS-HHH-HT---T-SEEE-TTTHHHH----HHCS-S-SE-EEEES-HHHHHHHHHHH--E
T ss_pred HHHHHHHHHC-CCCeEEEEecChHHH-Hc---cCCeEEECccHHHH----HHHh-cCCCeEEEcCcHHHHHHHHHhhCCe
Confidence 4455555555 444555555322111 11 12233444444333 3333 4456699999999999998888543
Q ss_pred ----CceEEEeCCCCHHHHHHHHhc
Q 011113 112 ----IASEALHGDISQHQRERTLNG 132 (493)
Q Consensus 112 ----~~~~~lhg~~~~~~r~~~~~~ 132 (493)
-....+|-.++.++-+.+.++
T Consensus 159 ii~w~G~C~VH~~f~~~~i~~~r~~ 183 (296)
T PF02445_consen 159 IILWPGYCPVHERFTPEDIEKAREK 183 (296)
T ss_dssp EEESSSS--TGGG--HHHHHHHHCC
T ss_pred EEEECCCcccccccCHHHHHHHHHH
Confidence 235677888887776665554
No 324
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=35.00 E-value=4.7e+02 Score=26.09 Aligned_cols=130 Identities=16% Similarity=0.237 Sum_probs=70.6
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-c----CceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCc--cEE
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTS-I----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV--DLI 159 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~----~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v--~~V 159 (493)
.+.+-|||+|.+..+..+++..-. . -....+|-..+.++-.+.-+... ...|||= |.+ .+|
T Consensus 157 ~~~~~Iif~PD~~Lg~yva~~tg~k~ii~w~G~C~VH~~ft~~~i~~~k~~~P--da~vlvH----------PEC~~~Vv 224 (324)
T COG0379 157 LDGDKILFLPDKNLGRYVAKQTGAKKIILWPGHCIVHEEFTAEDIEELKEKYP--DAEVLVH----------PECPPEVV 224 (324)
T ss_pred cCCCcEEEcCcHHHHHHHHHHcCCCcEEEECCccchhhhcCHHHHHHHHHHCC--CCEEEEC----------CCCCHHHH
Confidence 356789999999999888887732 2 13456677777666555544432 2223321 111 112
Q ss_pred EeCCCCCChhHHHHHhhccCCCCCcceEEEecChhhHHHHHHHHHHhCCCceeeCCCCH----HHHHHHHHHHHHHHhcC
Q 011113 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV----EDVLESSAEQVVATLNG 235 (493)
Q Consensus 160 I~~~~p~~~~~y~qr~GR~gR~g~~g~~i~l~~~~e~~~~~~l~~~~~~~~~~~~~p~~----~~~~~~~~~~~~~~l~~ 235 (493)
-..|+.-|....++.+-. .++.-+++.+ |...+.+|++....+ +.++++.. ..+....++.+...|++
T Consensus 225 ~~AD~vGST~~ii~~~~~-----~~~~~~iv~T--E~g~~~~l~~~~P~k-~~~~~~~~~~~C~~Mk~itL~~i~~~L~~ 296 (324)
T COG0379 225 ELADFVGSTSQIIKAVKA-----SPAQKFIVGT--ERGIVHRLQKEAPDK-EFIPLPTAGAVCPTMKMITLEKILEALEE 296 (324)
T ss_pred HhccccccHHHHHHHHhc-----CCCceEEEEe--cHHHHHHHHHHCCCC-eEEccCCCCCcChhhhhhCHHHHHHHHHh
Confidence 234444555555555541 2334444443 456677777766444 34444432 33444556666666665
Q ss_pred C
Q 011113 236 V 236 (493)
Q Consensus 236 ~ 236 (493)
.
T Consensus 297 ~ 297 (324)
T COG0379 297 G 297 (324)
T ss_pred C
Confidence 5
No 325
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=34.80 E-value=6.1e+02 Score=27.28 Aligned_cols=155 Identities=16% Similarity=0.154 Sum_probs=83.9
Q ss_pred eEEEEeCChHHHHHHHHHHHc---cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCCCCC
Q 011113 90 KTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN 166 (493)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~~p~ 166 (493)
--|||++|.-.|-+.+..+-+ ++.+. +|- ..+-..++..|....++.||-||-. |=+-+.|.- |-=..+|.
T Consensus 114 ~PIvYTPTvG~acq~y~~i~r~p~Glfis-i~D---~Ghi~~~l~nWp~~~V~~IvVTDGe-rILGLGDlG-~~GmgIpv 187 (582)
T KOG1257|consen 114 LPIVYTPTVGLACQQYGLIFRRPQGLFIS-IKD---KGHIKQVLKNWPERNVKAIVVTDGE-RILGLGDLG-VNGMGIPV 187 (582)
T ss_pred CCeeecCcHHHHHHHhhhhhccCceeEEE-ecc---cchHHHHHHhCCccceeEEEEeCCC-ceecccccc-cCccccee
Confidence 349999999887777666643 22222 221 1355678889988899999999831 111111111 00122332
Q ss_pred -ChhHHHHHhhccCCCCCcceEEEecC--hhhHHHHHHHHHHhCCCceeeCCCCHHHHHHHHHHHHHHHhcCCCccchhh
Q 011113 167 -DPETFVHRSGRTGRAGKEGTAILMFT--SSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEF 243 (493)
Q Consensus 167 -~~~~y~qr~GR~gR~g~~g~~i~l~~--~~e~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (493)
...-|.--.|= ++..|+-++. -++.+.+.+=.-+++.+.+++.-+..++.++..++.+....-...--..+.
T Consensus 188 gKL~Lyta~~GI-----~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG~~~lIqFED 262 (582)
T KOG1257|consen 188 GKLALYTALGGI-----RPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYGPNTLIQFED 262 (582)
T ss_pred cHHHHHHHhcCC-----ChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhCcceEEEehh
Confidence 23334333221 3444444332 233334444455777788888777888888887777776652211112222
Q ss_pred h-HHHHHHHHhhh
Q 011113 244 F-TPTAQRLIEEK 255 (493)
Q Consensus 244 ~-~~~~~~l~~~~ 255 (493)
| ...|.+++++.
T Consensus 263 F~~~nAfrlL~kY 275 (582)
T KOG1257|consen 263 FANHNAFRLLEKY 275 (582)
T ss_pred ccchhHHHHHHHh
Confidence 3 24466777764
No 326
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=34.79 E-value=96 Score=25.09 Aligned_cols=36 Identities=11% Similarity=0.010 Sum_probs=26.8
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-cCc--eEEEeCCCC
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTS-IIA--SEALHGDIS 122 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~--~~~lhg~~~ 122 (493)
+..+++|||.+-..+...+..|.. ++. +..|.|+|.
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~ 103 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQ 103 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHH
Confidence 346899999887666667777775 663 778889874
No 327
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=34.76 E-value=18 Score=38.79 Aligned_cols=17 Identities=47% Similarity=1.136 Sum_probs=14.2
Q ss_pred CccccCCCCCccc--CCCC
Q 011113 476 GACFNCGKSGHRA--SECP 492 (493)
Q Consensus 476 ~~c~~c~~~gh~~--~~c~ 492 (493)
..|-||||.|||- .-||
T Consensus 938 r~C~nCGQvGHmkTNK~CP 956 (968)
T COG5179 938 RTCGNCGQVGHMKTNKACP 956 (968)
T ss_pred eecccccccccccccccCc
Confidence 3699999999996 4577
No 328
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=34.34 E-value=1.5e+02 Score=33.23 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=41.3
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHH--ccCceEEEeCCCCHHHHHHHHhccc-CCCEEEEEecc
Q 011113 86 AKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFR-QGKFTVLVATD 145 (493)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~--~~~~~~~lhg~~~~~~r~~~~~~F~-~g~~~iLVaT~ 145 (493)
..+++-||.||-.-.-..+.+.-+ -.+.+..+||+ +++|....+.+. .+.++|+|+|-
T Consensus 215 ~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTsY 275 (971)
T KOG0385|consen 215 GIPGPFLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITSY 275 (971)
T ss_pred CCCCCeEEEeeHhhHHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhccCCCceEeehH
Confidence 346899999986554444333332 25789999999 688887777765 46899999984
No 329
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=33.30 E-value=64 Score=26.89 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=29.8
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHc-cC--ceEEEeCCCC
Q 011113 86 AKGGKTIVFTQTKRDADEVSLALTS-II--ASEALHGDIS 122 (493)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~--~~~~lhg~~~ 122 (493)
.++.+++|||.+-..+...+..|.. ++ .+..+.|++.
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~ 109 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLK 109 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHH
Confidence 3567899999987788888888885 67 5888999983
No 330
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=33.03 E-value=6.1e+02 Score=27.43 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=30.2
Q ss_pred ceEEEeCCCCHH--HHHHHHhcccCCCEEEEEecc--cccccCCCCCccE
Q 011113 113 ASEALHGDISQH--QRERTLNGFRQGKFTVLVATD--VAARGLDIPNVDL 158 (493)
Q Consensus 113 ~~~~lhg~~~~~--~r~~~~~~F~~g~~~iLVaT~--~~~~Gidip~v~~ 158 (493)
....+||.+..- -+..++.+|+++++.|-|.|. .-...++++...+
T Consensus 415 ~lilVHGE~neM~rLKs~L~~~f~d~kv~i~v~tprn~e~v~l~f~~ekl 464 (668)
T KOG1137|consen 415 HLILVHGEANEMMRLKSALEAAFRDGKVPIDVSTPRNCEDVELYFPGEKL 464 (668)
T ss_pred eEEEEecccchhHHHHHHHHHHhccCCCcceecCCccceEeeeecCcchh
Confidence 356678877643 456788999999988888885 3333444444443
No 331
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=32.97 E-value=3.2e+02 Score=29.51 Aligned_cols=136 Identities=10% Similarity=0.095 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhCCCCCcEEEEeccCChHHHHHHHHhcCCCceEEec-cccccccc--cceEEEEEEcCcccHHHHHHHHH
Q 011113 6 FEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLV-GNQDEKLA--EGIKLYAISTTATSKRTILSDLI 82 (493)
Q Consensus 6 F~~~l~~Il~~~~~~~q~ll~SAT~p~~v~~l~~~~l~~~~~i~~~-~~~~~~~~--~~i~~~~~~~~~~~k~~~l~~ll 82 (493)
+.+-++.|....+...++-.+.+.+...+....++...+...|-+. +..-..+. .++....+.+...+-+.+|...
T Consensus 15 l~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~dviIsrG~ta~~i~~~~~iPVv~i~~s~~Dil~al~~a- 93 (526)
T TIGR02329 15 LFDLFRDIAPEFDHRANITPIQLGFEDAVREIRQRLGAERCDVVVAGGSNGAYLKSRLSLPVIVIKPTGFDVMQALARA- 93 (526)
T ss_pred HHHHHHHHHHhCCCCceEEEEeccHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHhCCCCEEEecCChhhHHHHHHHH-
Confidence 4556667777766446677788888655554434444432222222 21111111 2334444455444555554332
Q ss_pred HHHcCCCeEEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011113 83 TVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
+.+...--+|-|-+....+..++..|.-.+....+|.. ++-...++..+...++++|+..
T Consensus 94 ~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~~~~~~---~e~~~~~~~l~~~G~~~viG~~ 153 (526)
T TIGR02329 94 RRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTE---EDARSCVNDLRARGIGAVVGAG 153 (526)
T ss_pred HhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCH---HHHHHHHHHHHHCCCCEEECCh
Confidence 23322234556777778888999988766777777765 4555556666666678887654
No 332
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=32.78 E-value=78 Score=24.93 Aligned_cols=36 Identities=11% Similarity=0.007 Sum_probs=27.7
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHc-cC-ceEEEeCCC
Q 011113 86 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 121 (493)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~-~~~~lhg~~ 121 (493)
.+..++||||++-..+...+..|.. ++ .+..|.|++
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 91 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGT 91 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCH
Confidence 4567899999997777777877864 55 577788876
No 333
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=32.70 E-value=79 Score=36.53 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=47.8
Q ss_pred CeEEEEeCChHHHHHHHHHH-HccCceEEEeCCCCHHHHHHHHhcccCC--CEEEEEecc
Q 011113 89 GKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQG--KFTVLVATD 145 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L-~~~~~~~~lhg~~~~~~r~~~~~~F~~g--~~~iLVaT~ 145 (493)
+-+||..|-....+.....| ...+++..||+.++..+|..+++.+.++ .++||--|+
T Consensus 305 gitvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtP 364 (941)
T KOG0351|consen 305 GVTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTP 364 (941)
T ss_pred CceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCH
Confidence 45667777777777666666 4589999999999999999999999999 899998887
No 334
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=32.54 E-value=1.6e+02 Score=27.18 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc
Q 011113 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS 110 (493)
Q Consensus 75 ~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~ 110 (493)
.+.|..++......+..|++.........+.+.|.+
T Consensus 108 ~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~ 143 (239)
T cd06578 108 SEGLLELLELQDGKGKRILRPRGGRAREDLAEALRE 143 (239)
T ss_pred HHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHH
Confidence 333444444432234444444455555677777764
No 335
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=32.13 E-value=1.1e+02 Score=29.95 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=43.0
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc-----cc-cccCCCCC
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA-ARGLDIPN 155 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~-----~~-~~Gidip~ 155 (493)
..-++||..||++.+.++.+-+.. ++.+.+.-|+.+-.+-.+.++ - -..++..|+ .. -+.+...+
T Consensus 94 r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld---~-G~hvVsGtPGrv~dmikr~~L~tr~ 169 (400)
T KOG0328|consen 94 RETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLD---Y-GQHVVSGTPGRVLDMIKRRSLRTRA 169 (400)
T ss_pred ceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhc---c-cceEeeCCCchHHHHHHhccccccc
Confidence 346899999999999988877653 345555556655444444444 2 235666665 22 23355556
Q ss_pred ccEEEe
Q 011113 156 VDLIIH 161 (493)
Q Consensus 156 v~~VI~ 161 (493)
|.++|.
T Consensus 170 vkmlVL 175 (400)
T KOG0328|consen 170 VKMLVL 175 (400)
T ss_pred eeEEEe
Confidence 665553
No 336
>PHA02653 RNA helicase NPH-II; Provisional
Probab=31.64 E-value=1.1e+02 Score=34.15 Aligned_cols=68 Identities=9% Similarity=-0.017 Sum_probs=44.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc--------cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEE
Q 011113 88 GGKTIVFTQTKRDADEVSLALTS--------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~--------~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~V 159 (493)
..+++|-+||++.|.+++..+.+ +..+...+|+++...... ..+ ...|||+|.-+. -.++..+.+|
T Consensus 222 ~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t---~~k--~~~Ilv~T~~L~-l~~L~~v~~V 295 (675)
T PHA02653 222 ERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELINT---NPK--PYGLVFSTHKLT-LNKLFDYGTV 295 (675)
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHHhhc---ccC--CCCEEEEeCccc-ccccccCCEE
Confidence 35899999999999998887753 234677899987422221 112 347999985321 1256678888
Q ss_pred Ee
Q 011113 160 IH 161 (493)
Q Consensus 160 I~ 161 (493)
|.
T Consensus 296 VI 297 (675)
T PHA02653 296 II 297 (675)
T ss_pred Ec
Confidence 74
No 337
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=31.62 E-value=30 Score=27.90 Aligned_cols=60 Identities=18% Similarity=0.274 Sum_probs=38.6
Q ss_pred EEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHH------------HHHHHHhcccCCCEEEEEeccccccc
Q 011113 91 TIVFTQTKRDADEVSLALTS-IIASEALHGDISQH------------QRERTLNGFRQGKFTVLVATDVAARG 150 (493)
Q Consensus 91 ~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~------------~r~~~~~~F~~g~~~iLVaT~~~~~G 150 (493)
.||.+.....+..+++.|.. .+.+....|.+-.. .+.+.+.+.....-.|+||||.-..|
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D~EG 73 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPDREG 73 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SSHHH
T ss_pred CEEEEeCHHHHHHHHHHcCCCCEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCCChHH
Confidence 47889999999999999873 45666666654211 12344444434456799999976555
No 338
>cd00188 TOPRIM Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA, type IIA and type IIB topoisomerases, bacterial DnaG-type primases, small primase-like proteins from bacteria and archaea, OLD family nucleases from bacterial and archaea, and bacterial DNA repair proteins of the RecR/M family. This domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases and in strand joining in topoisomerases and, as a general acid in strand cleavage by topisomerases and nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=29.53 E-value=1.5e+02 Score=21.59 Aligned_cols=60 Identities=23% Similarity=0.151 Sum_probs=35.4
Q ss_pred EEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccC
Q 011113 91 TIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 151 (493)
Q Consensus 91 ~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gi 151 (493)
.+|+|....++..+.........+..+.|.........+...++. ...|++++|.-..|.
T Consensus 2 ~viivEg~~d~~~l~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~~~v~i~~D~D~~g~ 61 (83)
T cd00188 2 KLIIVEGPSDALALAQAGGYGGAVVALGGHALNKTRELLKRLLGE-AKEVIIATDADREGE 61 (83)
T ss_pred EEEEEecHHHHHHHHHHcCCCEEEEEEccEEcHHHHHHHHHHhcC-CCEEEEEcCCChhHH
Confidence 478888888888777766544556666555443223333333332 567888887544443
No 339
>PRK13529 malate dehydrogenase; Provisional
Probab=29.50 E-value=7.5e+02 Score=26.90 Aligned_cols=55 Identities=18% Similarity=0.126 Sum_probs=33.6
Q ss_pred eEEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011113 90 KTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
--|||++|.-++-+-+..+-+.-.-.++ +--....-.++++.+...+++++|.||
T Consensus 100 ~PivYTPTVG~ac~~~s~~~r~p~Glyi-s~~d~g~i~~~l~nwp~~~v~viVVTD 154 (563)
T PRK13529 100 MPIIYTPTVGEACERFSHIYRRPRGLFI-SYDDRDRIEDILQNAPNRDIKLIVVTD 154 (563)
T ss_pred CCeeecccHHHHHHHHhhcccCCCceEe-ccCCHHHHHHHHhcCCcccceEEEEeC
Confidence 3499999998765544444321111111 112344556677777778999999998
No 340
>PRK01415 hypothetical protein; Validated
Probab=29.49 E-value=74 Score=30.59 Aligned_cols=39 Identities=23% Similarity=0.149 Sum_probs=31.7
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHc-cCc-eEEEeCCCCHH
Q 011113 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQH 124 (493)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~~~ 124 (493)
.++.++++||.+=..++..+..|.+ ++. +..|.|++..-
T Consensus 169 ~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w 209 (247)
T PRK01415 169 LKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQY 209 (247)
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHH
Confidence 4667999999999899999999885 664 88899997443
No 341
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=29.48 E-value=99 Score=27.18 Aligned_cols=79 Identities=19% Similarity=0.301 Sum_probs=43.0
Q ss_pred HHHHHHHHH-HHcCCCeEEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEe---ccccccc
Q 011113 75 RTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA---TDVAARG 150 (493)
Q Consensus 75 ~~~l~~ll~-~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVa---T~~~~~G 150 (493)
..+|.++++ .+....++||..+|+-.++++++.|+. .+ ..+|..+-.. ..+.+.-+.++.- +.-+..+
T Consensus 19 r~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~-~~-~~~~t~~~~~------~~~g~~~i~vMc~at~~~~~~~p 90 (148)
T PF07652_consen 19 RRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKG-LP-VRFHTNARMR------THFGSSIIDVMCHATYGHFLLNP 90 (148)
T ss_dssp TTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTT-SS-EEEESTTSS----------SSSSEEEEEHHHHHHHHHTS
T ss_pred ccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhc-CC-cccCceeeec------cccCCCcccccccHHHHHHhcCc
Confidence 345555554 456778999999999999999999974 23 3344332211 2233333444321 1223446
Q ss_pred CCCCCccEEEe
Q 011113 151 LDIPNVDLIIH 161 (493)
Q Consensus 151 idip~v~~VI~ 161 (493)
...++.++||.
T Consensus 91 ~~~~~yd~II~ 101 (148)
T PF07652_consen 91 CRLKNYDVIIM 101 (148)
T ss_dssp SCTTS-SEEEE
T ss_pred ccccCccEEEE
Confidence 66677777773
No 342
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=29.28 E-value=1.2e+02 Score=24.44 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=31.5
Q ss_pred HHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCc-eEEEeCCCC
Q 011113 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (493)
Q Consensus 78 l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (493)
+...+..+....+++|+|.+-..+...+..|.. ++. +..+.|++.
T Consensus 48 l~~~~~~~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T PRK00162 48 LGAFMRQADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFE 94 (108)
T ss_pred HHHHHHhcCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHH
Confidence 334444455667899999887777777877774 554 777888873
No 343
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=29.02 E-value=1.2e+02 Score=24.74 Aligned_cols=44 Identities=20% Similarity=0.158 Sum_probs=30.0
Q ss_pred HHHHHHHH--cCCCeEEEEeCChHHHHHHHHHHHc-cC-ceEEEeCCC
Q 011113 78 LSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDI 121 (493)
Q Consensus 78 l~~ll~~~--~~~~~~IVF~~t~~~~~~l~~~L~~-~~-~~~~lhg~~ 121 (493)
+..++... .+..++||||++-..+..++..|.. ++ .+..+.|++
T Consensus 66 ~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 113 (118)
T cd01449 66 LRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW 113 (118)
T ss_pred HHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH
Confidence 34444433 2567899999987777778888874 66 466777775
No 344
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=28.86 E-value=84 Score=25.59 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=28.5
Q ss_pred HHcCCCeEEEEeCCh--HHHHHHHHHHHc-cCceEEEeCCCC
Q 011113 84 VYAKGGKTIVFTQTK--RDADEVSLALTS-IIASEALHGDIS 122 (493)
Q Consensus 84 ~~~~~~~~IVF~~t~--~~~~~l~~~L~~-~~~~~~lhg~~~ 122 (493)
.+.+..++||||++- ..+..++..|.. ++.+..|.|++.
T Consensus 60 ~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~ 101 (110)
T cd01521 60 KLDKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLD 101 (110)
T ss_pred cCCCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHH
Confidence 344668999999875 356677777764 677888888874
No 345
>KOG1556 consensus 26S proteasome regulatory complex, subunit RPN8/PSMD7 [Posttranslational modification, protein turnover, chaperones]
Probab=28.70 E-value=1.8e+02 Score=27.70 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=43.1
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEeccCCh------HHHHHHHHhcCCCceEEec
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPS------WVKKLSRKYLDNPLNIDLV 51 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT~p~------~v~~l~~~~l~~~~~i~~~ 51 (493)
.||+.|.+.|..+++.+...-.++.+=-|=|+ .|.++.++|..+|+.+.+.
T Consensus 70 FlDh~Y~esM~~mfkKvNakekivGWYhTGPkl~~nDl~In~l~k~y~pnpvLvIId 126 (309)
T KOG1556|consen 70 FLDHNYIESMFGMFKKVNAKEKVVGWYHTGPKLRENDLDINELLKRYVPNPVLVIID 126 (309)
T ss_pred EeccHHHHHHHHHHHHhcchhheeeeeccCCccccchhhHHHHHhhcCCCceEEEEe
Confidence 37899999999999999999999998888665 6788999999999865443
No 346
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=28.68 E-value=1.9e+02 Score=28.35 Aligned_cols=83 Identities=11% Similarity=0.034 Sum_probs=55.1
Q ss_pred cHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCC
Q 011113 73 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD 152 (493)
Q Consensus 73 ~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gid 152 (493)
+-.++-.+.++.+. .--+|+|.....+..|-..+.-.-+...+|-.-.++....+++....|+. |.+.+|+---+|.
T Consensus 11 Nl~Dit~Ral~~L~--~~d~i~~EDTR~t~kLL~~~~I~~~~~~~~~hn~~~~~~~l~~~l~~g~~-valvSDAG~P~IS 87 (276)
T TIGR00096 11 NLEDITRRALELLA--CVDLFAEEDTRTSKLLLHLGIIATPKAFHIDNEFQEKQNLLAAKLEIGNN-IAVSSDAGPPLIS 87 (276)
T ss_pred CHHHHhHHHHHHHH--hCCEEEecCchhHHHHHHhcCCCCceEEEecccHhHHHHHHHHHHHcCCc-EEEEecCCCCCcC
Confidence 33333344444442 34489999999888887777543345567766666667777777777765 8888888777777
Q ss_pred CCCccE
Q 011113 153 IPNVDL 158 (493)
Q Consensus 153 ip~v~~ 158 (493)
-|...+
T Consensus 88 DPG~~L 93 (276)
T TIGR00096 88 DPGHLL 93 (276)
T ss_pred CccHHH
Confidence 776543
No 347
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=28.64 E-value=85 Score=24.78 Aligned_cols=37 Identities=11% Similarity=0.155 Sum_probs=28.4
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHc-cC-ceEEEeCCCC
Q 011113 86 AKGGKTIVFTQTKRDADEVSLALTS-II-ASEALHGDIS 122 (493)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~-~~~~lhg~~~ 122 (493)
.+..+++|||++-..+...+..|.+ ++ .+..++|++.
T Consensus 52 ~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~ 90 (99)
T cd01527 52 VGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLD 90 (99)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHH
Confidence 4567999999998777788888874 44 5777888863
No 348
>PHA02558 uvsW UvsW helicase; Provisional
Probab=28.55 E-value=2.7e+02 Score=29.80 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=46.6
Q ss_pred cCcccHHHHHHHHHHHH-cCC-CeEEEEeCChHHHHHHHHHHHccC-----ceEEEeCCCCHHHHHHHHhcccCCCEEEE
Q 011113 69 TTATSKRTILSDLITVY-AKG-GKTIVFTQTKRDADEVSLALTSII-----ASEALHGDISQHQRERTLNGFRQGKFTVL 141 (493)
Q Consensus 69 ~~~~~k~~~l~~ll~~~-~~~-~~~IVF~~t~~~~~~l~~~L~~~~-----~~~~lhg~~~~~~r~~~~~~F~~g~~~iL 141 (493)
....-|..+...+...+ ... .++||+|+|++.++++++.|.+.. .+..+.++.... ....|+
T Consensus 137 pTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-----------~~~~I~ 205 (501)
T PHA02558 137 PTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-----------TDAPIV 205 (501)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-----------CCCCEE
Confidence 33445655444443321 223 399999999999999999887521 232344442211 245799
Q ss_pred Eecc-cccc-c-CCCCCccEEE
Q 011113 142 VATD-VAAR-G-LDIPNVDLII 160 (493)
Q Consensus 142 VaT~-~~~~-G-idip~v~~VI 160 (493)
|+|. .+.+ . ..+.++.+||
T Consensus 206 VaT~qsl~~~~~~~~~~~~~iI 227 (501)
T PHA02558 206 VSTWQSAVKQPKEWFDQFGMVI 227 (501)
T ss_pred EeeHHHHhhchhhhccccCEEE
Confidence 9993 2222 1 1355777777
No 349
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=28.18 E-value=1.1e+02 Score=25.70 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=28.2
Q ss_pred HcCCCeEEEEeC-ChHHHHHHHHHHHc-cCceEEEeCCCCH
Q 011113 85 YAKGGKTIVFTQ-TKRDADEVSLALTS-IIASEALHGDISQ 123 (493)
Q Consensus 85 ~~~~~~~IVF~~-t~~~~~~l~~~L~~-~~~~~~lhg~~~~ 123 (493)
+.+..++||||. +-..+..++..|+. ++.+..|.|++..
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~a 123 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYKA 123 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHHH
Confidence 345679999996 44456666677765 7788899999743
No 350
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=28.16 E-value=2.6e+02 Score=27.02 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCCeEEEEe-CChHHHHHHHHHHHcc---CceEEE-eCCCCHHHHHHHHhcccCCCEEEEE
Q 011113 74 KRTILSDLITVYAKGGKTIVFT-QTKRDADEVSLALTSI---IASEAL-HGDISQHQRERTLNGFRQGKFTVLV 142 (493)
Q Consensus 74 k~~~l~~ll~~~~~~~~~IVF~-~t~~~~~~l~~~L~~~---~~~~~l-hg~~~~~~r~~~~~~F~~g~~~iLV 142 (493)
-.++...+++.....++.|.|. .+...+++.+..|++. +.+... ||-.+..+.+.++++...-..+||+
T Consensus 93 G~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~ 166 (253)
T COG1922 93 GTDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILL 166 (253)
T ss_pred hHHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCEEE
Confidence 3556666676665554555555 4555566777778764 344444 5888888878888888766655544
No 351
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=27.76 E-value=1.2e+02 Score=25.01 Aligned_cols=37 Identities=5% Similarity=0.015 Sum_probs=27.8
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHc-cCc-eEEEeCCCC
Q 011113 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (493)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (493)
.+..++||||.+-..+...+..|.. ++. +..+.+++.
T Consensus 62 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~ 100 (117)
T cd01522 62 GKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFE 100 (117)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCcee
Confidence 4567899999987778888888875 554 666777764
No 352
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=27.76 E-value=1.8e+02 Score=23.60 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=20.6
Q ss_pred CCCeEEEEeC-ChH----HHHHHHHHHH------ccCceEEEeCCCC
Q 011113 87 KGGKTIVFTQ-TKR----DADEVSLALT------SIIASEALHGDIS 122 (493)
Q Consensus 87 ~~~~~IVF~~-t~~----~~~~l~~~L~------~~~~~~~lhg~~~ 122 (493)
++.+++|||. +-. .+..+.+.|. -+..+..|.|++.
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~ 107 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFN 107 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHH
Confidence 4568899997 322 2333433332 1345788888864
No 353
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=27.70 E-value=87 Score=24.62 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=26.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCC
Q 011113 88 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDIS 122 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~ 122 (493)
+.++++||.+-..+...+..|.. ++.+..+.|++.
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 46899999987667777777764 677777888763
No 354
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=27.66 E-value=3.3e+02 Score=25.86 Aligned_cols=84 Identities=11% Similarity=0.152 Sum_probs=56.2
Q ss_pred CCCeEEEEeCC------------hHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccC---CCEEEEEeccccccc
Q 011113 87 KGGKTIVFTQT------------KRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ---GKFTVLVATDVAARG 150 (493)
Q Consensus 87 ~~~~~IVF~~t------------~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~---g~~~iLVaT~~~~~G 150 (493)
+.+.+||+.|. ..+++.|+..|+. +|.| .++-+++..+-.++++.|.+ ....++|+. +++-|
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V-~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~sHG 85 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEV-EVKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSHG 85 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEE-EEeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECCCC
Confidence 34567777663 4678999999987 6766 46889999999999999874 223333332 45556
Q ss_pred CCCCCccEEEeCC-CCCChhHHHHHhh
Q 011113 151 LDIPNVDLIIHYE-LPNDPETFVHRSG 176 (493)
Q Consensus 151 idip~v~~VI~~~-~p~~~~~y~qr~G 176 (493)
.. +.|+-.| .+.+.+++++...
T Consensus 86 ~~----~~l~~~D~~~v~l~~i~~~f~ 108 (243)
T cd00032 86 EE----GGIYGTDGDVVPIDEITSLFN 108 (243)
T ss_pred CC----CEEEEecCcEEEHHHHHHhhc
Confidence 44 6666556 5556667776664
No 355
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=27.48 E-value=2.2e+02 Score=25.77 Aligned_cols=37 Identities=27% Similarity=0.436 Sum_probs=29.3
Q ss_pred CcHHHHHHHHHHhCCCCCcEEEEeccCC----hHHHHHHHHhc
Q 011113 4 VGFEEDVELILENLPPKRQSMLFSATMP----SWVKKLSRKYL 42 (493)
Q Consensus 4 ~GF~~~l~~Il~~~~~~~q~ll~SAT~p----~~v~~l~~~~l 42 (493)
-||.+|++..++.+.. ++|..||-+| ..+..+++.+.
T Consensus 72 ~GYv~Dl~~al~~l~~--P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 72 EGYVEDLRFALESLGT--PILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred CChHHHHHHHHHhcCC--ceEEEecccccCCHHHHHHHHHHHh
Confidence 4899999999999976 8999999985 34555555555
No 356
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=27.00 E-value=2.1e+02 Score=32.41 Aligned_cols=61 Identities=8% Similarity=0.076 Sum_probs=41.2
Q ss_pred HHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCC-----CCHHHHHHHHhcccCCCEEEEEeccc
Q 011113 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGD-----ISQHQRERTLNGFRQGKFTVLVATDV 146 (493)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~-----~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (493)
..++..+ .+..++|.++++..|.+.++.+.. ++.+..++++ +.+++|..+. ..+|+++|+-
T Consensus 103 pa~l~aL-~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y------~~dIvygTp~ 173 (762)
T TIGR03714 103 PLYLNAL-TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIY------NSDIVYTTNS 173 (762)
T ss_pred HHHHHhh-cCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhC------CCCEEEECch
Confidence 3334443 456899999999999988887753 4566665553 5566665443 3679999973
No 357
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=26.98 E-value=3.7e+02 Score=25.55 Aligned_cols=83 Identities=12% Similarity=0.157 Sum_probs=56.0
Q ss_pred CCCeEEEEeCC-----------hHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCC----CEEEEEeccccccc
Q 011113 87 KGGKTIVFTQT-----------KRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG----KFTVLVATDVAARG 150 (493)
Q Consensus 87 ~~~~~IVF~~t-----------~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g----~~~iLVaT~~~~~G 150 (493)
+.+.+||+.|. ..+++.|++.|++ +|.+ .++-+++..+-.++++.|.+. ..+++|+. +++-|
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V-~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~-~~sHG 84 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEV-HVKNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LLSHG 84 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHhccccCCCCEEEEE-EcCCC
Confidence 44677888875 4589999999987 6766 468889999999999999763 23444443 55666
Q ss_pred CCCCCccEEEeCCC-CCChhHHHHHh
Q 011113 151 LDIPNVDLIIHYEL-PNDPETFVHRS 175 (493)
Q Consensus 151 idip~v~~VI~~~~-p~~~~~y~qr~ 175 (493)
. .++|+-.|- +.+.++.+...
T Consensus 85 ~----~~~l~~~D~~~v~l~~i~~~f 106 (241)
T smart00115 85 E----EGGIYGTDHSPLPLDEIFSLF 106 (241)
T ss_pred C----CCeEEEecCCEEEHHHHHHhc
Confidence 3 356665553 44555655555
No 358
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=26.82 E-value=5.3e+02 Score=24.09 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcc
Q 011113 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGF 133 (493)
Q Consensus 75 ~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F 133 (493)
.+.+..+.....+-..+.||+|.. .+++.+.+.. .+.+.-|||+.+++.-+++-+..
T Consensus 40 ~~~a~~i~~~v~~~~~VgVf~n~~--~~~i~~i~~~~~ld~VQlHG~e~~~~~~~l~~~~ 97 (208)
T COG0135 40 PEQAREIASAVPKVKVVGVFVNES--IEEILEIAEELGLDAVQLHGDEDPEYIDQLKEEL 97 (208)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCC--HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhc
Confidence 445556665543235788998753 3445555554 67889999999998877777665
No 359
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=26.45 E-value=1.9e+02 Score=33.63 Aligned_cols=51 Identities=20% Similarity=0.187 Sum_probs=39.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011113 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
+.|+|-..|+++.|.++++.+.+ ++.|..|.|++.-. +.++. +.+|||+|+
T Consensus 164 ~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~-~tei~------~tqiiVTTP 219 (1230)
T KOG0952|consen 164 DFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLT-KTEIA------DTQIIVTTP 219 (1230)
T ss_pred CceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhh-HHHHH------hcCEEEecc
Confidence 45888889999999999988874 46799999998443 33344 468999996
No 360
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=26.33 E-value=6.3e+02 Score=27.83 Aligned_cols=121 Identities=18% Similarity=0.216 Sum_probs=63.4
Q ss_pred EEEeccC--ChHHHHHHHHhcCCCceEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHHc--CCCeEEEEeCChH
Q 011113 24 MLFSATM--PSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA--KGGKTIVFTQTKR 99 (493)
Q Consensus 24 ll~SAT~--p~~v~~l~~~~l~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~--~~~~~IVF~~t~~ 99 (493)
+.+++|. +.+|.++++.++++...+......... +. .......+.-.+.+.+++..+. ....+.|.|+|-.
T Consensus 592 v~l~~syrSt~eI~efan~~l~d~~~~~p~~rsge~-p~----~i~~~~ne~l~qr~~~ii~~mkk~~~etiaVi~kt~~ 666 (747)
T COG3973 592 VGLIASYRSTAEIDEFANSLLPDRFRIHPLTRSGEK-PA----VIMSVANEELVQRNPDIIPRMKKRGSETIAVICKTDH 666 (747)
T ss_pred hhhhhhhcChHHHHHHHHHhccCCCccchhhcCCCC-ce----eeeccchHHHHHhhHHHHHHHHhcCCCceEEECCcHH
Confidence 3444443 567888888888742222111111111 11 1111222222333344443332 2357789999999
Q ss_pred HHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccCCCCCccEEEeCCC
Q 011113 100 DADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (493)
Q Consensus 100 ~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidip~v~~VI~~~~ 164 (493)
+|..+...|++.-. +..-.+.-+.|..+..-+.| -.+.||-+ ++||.||+
T Consensus 667 d~~~~~d~lre~~~---------~r~I~k~nq~f~~~~~vipv---y~aKGlEF---D~viv~d~ 716 (747)
T COG3973 667 DCKAVMDSLREKDS---------QRTIAKENQRFHHGSDVIPV---YDAKGLEF---DHVIVVDP 716 (747)
T ss_pred HHHHHHHHHhhcch---------hhHHHhhcccccCCceEEEe---eeccccee---eeEEEecc
Confidence 99999999975322 22223334456666543333 35678876 67777765
No 361
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=25.76 E-value=3e+02 Score=26.33 Aligned_cols=67 Identities=9% Similarity=0.119 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCC-CeEEEEeCChHHHHHHHHHHHcc--CceE-EEeCCCCHHHHHHHHhcccCCCEEEE
Q 011113 75 RTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSI--IASE-ALHGDISQHQRERTLNGFRQGKFTVL 141 (493)
Q Consensus 75 ~~~l~~ll~~~~~~-~~~IVF~~t~~~~~~l~~~L~~~--~~~~-~lhg~~~~~~r~~~~~~F~~g~~~iL 141 (493)
.+++..+++..... .++-++-.+...++.+++.|++. +.+. .+||-..+++.+.+++.......+||
T Consensus 91 ~dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil 161 (243)
T PRK03692 91 ADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIV 161 (243)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 45566666554333 35555556666688888888753 4433 45777777777777777665544443
No 362
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=25.75 E-value=1.1e+02 Score=23.92 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=25.2
Q ss_pred CCCeEEEEeCC--hHHHHHHHHHHHc-cC-ceEEEeCCCC
Q 011113 87 KGGKTIVFTQT--KRDADEVSLALTS-II-ASEALHGDIS 122 (493)
Q Consensus 87 ~~~~~IVF~~t--~~~~~~l~~~L~~-~~-~~~~lhg~~~ 122 (493)
+..+++|||.+ +..+...+..|.. ++ .+..+.|++.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 36789999998 4546666777764 44 5777888763
No 363
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=24.95 E-value=1.5e+02 Score=24.45 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=26.7
Q ss_pred cCCCeEEEEeCC-hHHHHHHHHHHHc-cCc-eEEEeCCCC
Q 011113 86 AKGGKTIVFTQT-KRDADEVSLALTS-IIA-SEALHGDIS 122 (493)
Q Consensus 86 ~~~~~~IVF~~t-~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (493)
.+..++||||.+ -..+..++..|.. ++. +..|-|++.
T Consensus 77 ~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 77 SNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 356789999988 4667777777764 554 777888873
No 364
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=24.91 E-value=2.2e+02 Score=27.13 Aligned_cols=73 Identities=12% Similarity=0.154 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCceE---EEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011113 73 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASE---ALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 73 ~k~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~---~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
...+.|...+..+.+.++-|.+..+....+.+.+.|.. ++.+. +|...-+....+...+.++.+.+++++-|+
T Consensus 107 ~~~~~l~~~l~~~~~~~~~vl~~~~~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS 183 (248)
T COG1587 107 GDSEGLLEELPELLKGGKRVLILRGNGGREVLEEKLEERGAEVREVEVYRTEPPPLDEATLIELLKLGEVDAVVFTS 183 (248)
T ss_pred cchHHHHHHhhhhccCCCeEEEEcCCCchHHHHHHHHhCCCEEEEEeeeeecCCCccHHHHHHHHHhCCCCEEEEeC
Confidence 33444444444443433444444444455677777764 44433 222222222223334445555555554443
No 365
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=24.58 E-value=6.4e+02 Score=27.41 Aligned_cols=57 Identities=18% Similarity=0.086 Sum_probs=34.0
Q ss_pred CeEEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEeccc
Q 011113 89 GKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (493)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~ 146 (493)
---|||++|..++-+-+..+-+.-.-. +..-.....-.++++.+...+++++|.||-
T Consensus 101 ~lpivYTPtVg~ac~~~s~~~r~p~Gl-y~s~~drg~i~~~l~Nwp~~~v~viVVTDG 157 (559)
T PTZ00317 101 LLPIIYTPTVGEACQNYSNLFQRDRGL-YLSRAHKGKIREILKNWPYDNVDVIVITDG 157 (559)
T ss_pred hcceecCcchHHHHHHHHhcccccCce-EEeecCcchHHHHHhcCCccCceEEEEecc
Confidence 345999999976544443332211111 111112334567788888889999999983
No 366
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=23.90 E-value=96 Score=24.74 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=26.4
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-cCc-eEEEeCCC
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 121 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~ 121 (493)
+..++||||.+-..+..++..|.. ++. +..+.|++
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~ 101 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSW 101 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcH
Confidence 457899999998778788888875 553 66677776
No 367
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=23.41 E-value=3.3e+02 Score=31.37 Aligned_cols=64 Identities=9% Similarity=0.007 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc
Q 011113 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (493)
Q Consensus 77 ~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~ 147 (493)
+|..++..+ .+..+-|.++|.-.|..=++.+.. ++.+..+.+++++.+|..++. ++|+++|...
T Consensus 113 ~l~a~l~al-~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~------~dI~YGT~~e 181 (913)
T PRK13103 113 TLAVYLNAL-SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA------ADITYGTNNE 181 (913)
T ss_pred HHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc------CCEEEEcccc
Confidence 344444444 578888999998777776666653 578899999999999999886 6888888743
No 368
>PLN02160 thiosulfate sulfurtransferase
Probab=23.33 E-value=1.5e+02 Score=25.35 Aligned_cols=37 Identities=11% Similarity=0.002 Sum_probs=29.0
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHc-cCc-eEEEeCCCC
Q 011113 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (493)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (493)
.+..++||||.+=..+...+..|.. ++. +..|.|++.
T Consensus 79 ~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~ 117 (136)
T PLN02160 79 NPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYL 117 (136)
T ss_pred CCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHH
Confidence 4567899999998888888888875 664 667778863
No 369
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=23.21 E-value=1.1e+02 Score=35.16 Aligned_cols=71 Identities=17% Similarity=0.130 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011113 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 75 ~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
..++..+++.....++-||.+|+......-.+.-.-.-.+..+...=++++|.......+.++++||++|-
T Consensus 431 IsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTty 501 (1157)
T KOG0386|consen 431 ISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTY 501 (1157)
T ss_pred HHHHHHHHHHcccCCCeEEeccccccCCchhhccccccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeH
Confidence 34445555554556788888887654433222111112344444455689999999999999999999995
No 370
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=23.20 E-value=6.5e+02 Score=25.36 Aligned_cols=68 Identities=24% Similarity=0.239 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccc
Q 011113 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (493)
Q Consensus 75 ~~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~ 147 (493)
..++.++++...+..+ +++..--..|+++++.+ ++...-+..+++.-+++.+.|.+..+++-..+|+.
T Consensus 113 ~~l~seii~e~l~~~~-~~vLSGPs~A~EVa~g~----pta~~vas~d~~~a~~v~~~f~~~~Frvy~~~Dv~ 180 (329)
T COG0240 113 GRLLSEIIEEELPDNP-IAVLSGPSFAKEVAQGL----PTAVVVASNDQEAAEKVQALFSSPYFRVYTSTDVI 180 (329)
T ss_pred cchHHHHHHHHcCCCe-EEEEECccHHHHHhcCC----CcEEEEecCCHHHHHHHHHHhCCCcEEEEecCchh
Confidence 3445566665544344 88888888888776544 55555555677788889999999999999999964
No 371
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=23.06 E-value=81 Score=29.39 Aligned_cols=131 Identities=17% Similarity=0.237 Sum_probs=62.2
Q ss_pred HHHHHHHHhCC-CCCcEEEEeccCChHHHHHHHHhc---------CCCceEEecccccccc--ccceEEEEEEcCcccHH
Q 011113 8 EDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYL---------DNPLNIDLVGNQDEKL--AEGIKLYAISTTATSKR 75 (493)
Q Consensus 8 ~~l~~Il~~~~-~~~q~ll~SAT~p~~v~~l~~~~l---------~~~~~i~~~~~~~~~~--~~~i~~~~~~~~~~~k~ 75 (493)
..++..++.++ .+...|+|+. ++.++.+++.+. .+-. +-.++...... ...+....+......-
T Consensus 29 ~~l~~~l~~l~~~~~d~viftS--~~av~~~~~~l~~~~~~~~~~~~~~-i~avG~~Ta~~l~~~G~~~~~~~~~~~~s- 104 (231)
T PF02602_consen 29 ASLEAALEQLPPGNYDWVIFTS--PNAVRAFFKALQSAGADLRLLKNIK-IFAVGPKTAEALREYGFQPDFVPSSEGSS- 104 (231)
T ss_dssp HHHHHHHHHHTGCCSSEEEESS--HHHHHHHHHHHHHTTHHHHHHHHSE-EEESSHHHHHHHHHTT-EECEE-TTSSSH-
T ss_pred HHHHHHHHhcccCCCCEEEEEC--HHHHHHHHHHHhhhhhhhhhccCCe-EEEEcHHHHHHHHHcCCCccccCCCCCCH-
Confidence 44556666554 4667777732 445555444332 2222 22333222111 1123332232212233
Q ss_pred HHHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-cCc---eEEEeCCCCHHHHHHHHhcccCCCEEEEEec
Q 011113 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIA---SEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (493)
Q Consensus 76 ~~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~---~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT 144 (493)
+.|.+++.....+.++|+++.... -..|.+.|++ ++. +.+|.- .+........+.|..+.+.+++-|
T Consensus 105 ~~L~~~l~~~~~~~~vl~~~g~~~-~~~l~~~L~~~g~~v~~~~vY~~-~~~~~~~~~~~~l~~~~~~~v~ft 175 (231)
T PF02602_consen 105 EGLAELLKEQLRGKRVLILRGEGG-RPDLPEKLREAGIEVTEVIVYET-PPEELSPELKEALDRGEIDAVVFT 175 (231)
T ss_dssp HHHHGGHHHCCTTEEEEEEESSSS-CHHHHHHHHHTTEEEEEEECEEE-EEHHHHHHHHHHHHHTTTSEEEES
T ss_pred HHHHHHHHhhCCCCeEEEEcCCCc-cHHHHHHHHHCCCeEEEEEEeec-ccccchHHHHHHHHcCCCCEEEEC
Confidence 333444443334456666665433 4557777753 433 344444 666777777888776665444444
No 372
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=22.54 E-value=2.7e+02 Score=22.65 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=25.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCC
Q 011113 88 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDI 121 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~ 121 (493)
..++||||.+-..+...+..|.+ ++....+.|++
T Consensus 60 ~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~ 94 (104)
T PRK10287 60 NDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGL 94 (104)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCH
Confidence 46799999997777788888874 66655556765
No 373
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=22.30 E-value=92 Score=24.60 Aligned_cols=36 Identities=8% Similarity=0.115 Sum_probs=26.3
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHc-cCc-eEEEeCCC
Q 011113 86 AKGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDI 121 (493)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~ 121 (493)
.+..+++|||.+-..+...+..|.. ++. +..|.|++
T Consensus 59 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~ 96 (103)
T cd01447 59 AEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGF 96 (103)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcH
Confidence 4567999999886667777777765 554 66777775
No 374
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=22.00 E-value=6.9e+02 Score=23.76 Aligned_cols=33 Identities=9% Similarity=0.258 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHhcccCCCEEEEEecccccccCCC
Q 011113 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (493)
Q Consensus 119 g~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gidi 153 (493)
+.|+..+--++++.+. .-++|+.+|+-..--|+
T Consensus 187 gKlt~~eAveIV~ey~--~~r~ilnSD~~s~~sd~ 219 (254)
T COG1099 187 GKLTVEEAVEIVREYG--AERIILNSDAGSAASDP 219 (254)
T ss_pred CcCCHHHHHHHHHHhC--cceEEEecccccccccc
Confidence 8899999888988877 44688888765554443
No 375
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=21.93 E-value=2.9e+02 Score=31.86 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCCeEEEEeCChHHHHHHHHHHHc-----cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011113 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 77 ~l~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
+|..++..+ .+..+.|.+++...|...++.+.. ++.+.++.+++++.+|.... ..+|+++|+
T Consensus 113 ~lp~~l~al-~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~~~Y------~~dI~YgT~ 179 (908)
T PRK13107 113 TLPAYLNAL-TGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKAAY------NADITYGTN 179 (908)
T ss_pred HHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHhcC------CCCeEEeCC
Confidence 334444444 456799999999999888887763 57888899999987665544 357888887
No 376
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=21.89 E-value=2.4e+02 Score=27.34 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=40.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHccCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecc
Q 011113 88 GGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~ 145 (493)
..-+|+|++.....+.+...++.+..+..-.-+++.++.+++.+.-+...+.++++.+
T Consensus 69 ~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~N 126 (266)
T TIGR00036 69 PDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPN 126 (266)
T ss_pred CCEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECc
Confidence 3567778877777777777777777776655578888877777766665667777654
No 377
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=21.87 E-value=90 Score=20.33 Aligned_cols=16 Identities=38% Similarity=0.690 Sum_probs=13.1
Q ss_pred eEee-cCHHHHHHHHhh
Q 011113 336 AVFD-LPEEIAKELLNK 351 (493)
Q Consensus 336 s~fd-vp~~~a~~~~~~ 351 (493)
.+|| ||.+.+++++.+
T Consensus 17 ~Vfd~v~~~Ka~~im~l 33 (36)
T PF06200_consen 17 CVFDDVPPDKAQEIMLL 33 (36)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 4566 999999999875
No 378
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=21.84 E-value=44 Score=34.96 Aligned_cols=16 Identities=50% Similarity=1.398 Sum_probs=15.3
Q ss_pred cccCCCCCcccCCCCC
Q 011113 478 CFNCGKSGHRASECPN 493 (493)
Q Consensus 478 c~~c~~~gh~~~~c~~ 493 (493)
|-+||..||..=|||+
T Consensus 264 c~~cg~~~H~q~~cp~ 279 (554)
T KOG0119|consen 264 CRNCGSTGHKQYDCPG 279 (554)
T ss_pred ccccCCCccccccCCc
Confidence 9999999999999995
No 379
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=21.53 E-value=2.1e+02 Score=22.96 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=31.0
Q ss_pred CCCCcHHHHHHHHHHhCCCCCcEEEEecc--CChHHHHHHHHh
Q 011113 1 MLAVGFEEDVELILENLPPKRQSMLFSAT--MPSWVKKLSRKY 41 (493)
Q Consensus 1 mL~~GF~~~l~~Il~~~~~~~q~ll~SAT--~p~~v~~l~~~~ 41 (493)
||+..-+++|+.++..+.....+++|+.. ...+++++++..
T Consensus 1 ~l~~~~~~qL~~~f~~l~~pV~l~~f~~~~~~~~e~~~ll~e~ 43 (94)
T cd02974 1 MLDANLKQQLKAYLERLENPVELVASLDDSEKSAELLELLEEI 43 (94)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEEEeCCCcchHHHHHHHHHH
Confidence 78888999999999999888888888653 334555555544
No 380
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=21.38 E-value=1.9e+02 Score=30.19 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=6.9
Q ss_pred EEEEecccccccCC
Q 011113 139 TVLVATDVAARGLD 152 (493)
Q Consensus 139 ~iLVaT~~~~~Gid 152 (493)
...|.+|++ |=||
T Consensus 122 ~yfVlNDiF-Rfvd 134 (419)
T KOG0116|consen 122 GYFVLNDIF-RFVD 134 (419)
T ss_pred ceEEEechh-hhcc
Confidence 455666654 3355
No 381
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=21.26 E-value=1.3e+02 Score=23.82 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=26.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHc-cCc-eEEEeCCCC
Q 011113 88 GGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDIS 122 (493)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~ 122 (493)
..+++|+|.+-..+..++..|.. ++. +..|.|++.
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 56899999887777777777775 554 778888863
No 382
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=20.39 E-value=5.7e+02 Score=22.12 Aligned_cols=84 Identities=11% Similarity=0.057 Sum_probs=51.3
Q ss_pred HHHHHHHHHHc---CCCeEEEEeCChHHHHHHHHHHHc-cCceEEEeCCCCHHHHHHHHhcccCCCEEEEEecccccccC
Q 011113 76 TILSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 151 (493)
Q Consensus 76 ~~l~~ll~~~~---~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~r~~~~~~F~~g~~~iLVaT~~~~~Gi 151 (493)
..+..+++.+. ++.++.|+-.+....+.++..|.+ +..+...|..... -++ ..+ +.+|+|+.--...-|
T Consensus 13 ~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~-l~~----~v~--~ADIVvsAtg~~~~i 85 (140)
T cd05212 13 KAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQ-LQS----KVH--DADVVVVGSPKPEKV 85 (140)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcC-HHH----HHh--hCCEEEEecCCCCcc
Confidence 34455555552 467899999999999999999985 7888888876432 111 222 345555433222334
Q ss_pred CCC---CccEEEeCCCCC
Q 011113 152 DIP---NVDLIIHYELPN 166 (493)
Q Consensus 152 dip---~v~~VI~~~~p~ 166 (493)
+-. .=.+||++++..
T Consensus 86 ~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 86 PTEWIKPGATVINCSPTK 103 (140)
T ss_pred CHHHcCCCCEEEEcCCCc
Confidence 432 224677777654
No 383
>KOG3070 consensus Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing [Translation, ribosomal structure and biogenesis]
Probab=20.18 E-value=50 Score=31.47 Aligned_cols=17 Identities=41% Similarity=1.179 Sum_probs=15.7
Q ss_pred ccccCCCCCcccCCCCC
Q 011113 477 ACFNCGKSGHRASECPN 493 (493)
Q Consensus 477 ~c~~c~~~gh~~~~c~~ 493 (493)
.||.|+++||++.+|++
T Consensus 201 ~~~~~~~~g~~~~~~~e 217 (235)
T KOG3070|consen 201 LCYTCGEPGHVADGCEE 217 (235)
T ss_pred cccccCccccccccccc
Confidence 59999999999999974
No 384
>PRK05320 rhodanese superfamily protein; Provisional
Probab=20.09 E-value=1.8e+02 Score=28.07 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=30.8
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHc-cCc-eEEEeCCCCH
Q 011113 87 KGGKTIVFTQTKRDADEVSLALTS-IIA-SEALHGDISQ 123 (493)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~-~~~lhg~~~~ 123 (493)
++.++++||.+=..++..+..|.+ ++. +..|.|++..
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~ 212 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILK 212 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHH
Confidence 567899999998889999999885 674 7889999844
No 385
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=20.06 E-value=1.8e+02 Score=24.07 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=31.7
Q ss_pred CcHHHHHHHHHHhCCCC----------CcEEEEeccCChHHHHHHHHhc
Q 011113 4 VGFEEDVELILENLPPK----------RQSMLFSATMPSWVKKLSRKYL 42 (493)
Q Consensus 4 ~GF~~~l~~Il~~~~~~----------~q~ll~SAT~p~~v~~l~~~~l 42 (493)
.+|+.+.++|.+..|-. ---|.||+.+|+.+.+-+++.+
T Consensus 44 ~~F~~~c~dIa~~~~~~G~ik~~r~~~g~rL~fS~~ip~~v~QriRNvf 92 (108)
T PF12321_consen 44 PGFLHNCRDIARRYPFRGTIKVYRQRGGVRLHFSRSIPKKVQQRIRNVF 92 (108)
T ss_pred hHHHHHHHHHHHhCCCcEEEEEEEeCCceEEEEeCCCCHHHhhhhhhcC
Confidence 57999999999987742 2347899999999999888766
Done!