BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011114
         (493 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q86UR5|RIMS1_HUMAN Regulating synaptic membrane exocytosis protein 1 OS=Homo sapiens
           GN=RIMS1 PE=1 SV=1
          Length = 1692

 Score = 33.9 bits (76), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 97  EEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGN 156
           + E+++  PP+  RS R  K+R    ++  +E +   S   +    D++   + + + G+
Sbjct: 505 QSESVRPSPPKPHRSKRGGKKRQMSVSSSEEEGV---STPEYTSCEDVELESESVSEKGD 561

Query: 157 DSFYYYPGRIWLDTEGAPIQAH 178
             +Y+     W   E +PI +H
Sbjct: 562 LDYYWLDPATWHSRETSPISSH 583


>sp|Q9JIR4|RIMS1_RAT Regulating synaptic membrane exocytosis protein 1 OS=Rattus
           norvegicus GN=Rims1 PE=1 SV=1
          Length = 1615

 Score = 33.5 bits (75), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 97  EEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGN 156
           + E+++  PP+  R  R  KRR    ++  +E +   S   +    D++   + + + G+
Sbjct: 519 QSESVRPSPPKPHRPKRGGKRRQMSVSSSEEEGV---STPEYTSCEDVELESESVSEKGD 575

Query: 157 DSFYYYPGRIWLDTEGAPIQAH 178
             +Y+     W   E +PI +H
Sbjct: 576 LDYYWLDPATWHSRETSPISSH 597


>sp|P49943|XYLB_BACOV Xylosidase/arabinosidase OS=Bacteroides ovatus GN=xsa PE=2 SV=1
          Length = 325

 Score = 32.3 bits (72), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 13/100 (13%)

Query: 230 KNEGIVLAAEETN-ETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAIS 288
           K+ G+VL+ E+       L+  +V+ +         GKY M+  + D N     +GVA+S
Sbjct: 66  KDHGVVLSTEDIPWAGRQLWDCDVVCK--------DGKYYMYFPLKDQN-DIFRIGVAVS 116

Query: 289 DYPTGPFDYLYSKRP-HGFDSRDMTIFKDDDGVAYLVYSS 327
           D P GPF  +    P  G  S D  ++ D DG  Y+ +  
Sbjct: 117 DKPYGPF--IPEANPMKGSYSIDPAVWDDGDGNYYIYFGG 154


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.140    0.454 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206,601,616
Number of Sequences: 539616
Number of extensions: 9446935
Number of successful extensions: 18652
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 18645
Number of HSP's gapped (non-prelim): 9
length of query: 493
length of database: 191,569,459
effective HSP length: 122
effective length of query: 371
effective length of database: 125,736,307
effective search space: 46648169897
effective search space used: 46648169897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)