Query 011114
Match_columns 493
No_of_seqs 334 out of 2209
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:16:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08985 GH43_6 Glycosyl hydrol 100.0 2.1E-56 4.6E-61 446.0 31.9 264 175-457 1-265 (265)
2 cd09003 GH43_AXH_1 Glycosyl hy 100.0 1.1E-41 2.3E-46 347.7 27.6 257 188-463 18-306 (311)
3 cd08988 GH43_ABN Glycosyl hydr 100.0 1.2E-40 2.7E-45 334.6 29.7 252 178-457 1-279 (279)
4 cd09004 GH43_bXyl Glycosyl hyd 100.0 1.5E-40 3.2E-45 332.2 29.0 254 177-463 8-270 (275)
5 cd08981 GH43_2 Glycosyl hydrol 100.0 3.4E-40 7.3E-45 333.7 29.9 254 175-459 4-285 (291)
6 cd08990 GH43_AXH_like Glycosyl 100.0 2.1E-39 4.4E-44 324.0 29.1 254 179-463 2-270 (274)
7 cd08989 GH43_XYL Glycosyl hydr 100.0 5.7E-39 1.2E-43 321.0 28.9 253 177-457 8-268 (269)
8 cd09000 GH43_XYL_1 Glycosyl hy 100.0 2.8E-38 6.1E-43 318.1 29.2 258 178-459 9-282 (288)
9 PF04616 Glyco_hydro_43: Glyco 100.0 3.2E-38 7E-43 314.7 28.3 257 177-459 10-282 (286)
10 cd09002 GH43_XYL_3 Glycosyl hy 100.0 3.9E-38 8.4E-43 316.9 28.9 248 172-459 7-274 (280)
11 cd09001 GH43_XYL_2 Glycosyl hy 100.0 7.4E-38 1.6E-42 313.0 27.6 240 177-458 11-262 (269)
12 cd08991 GH43_bXyl_2 Glycosyl h 100.0 3E-37 6.6E-42 310.6 31.5 255 179-459 2-285 (294)
13 cd08999 GH43_ABN_2 Glycosyl hy 100.0 4.7E-37 1E-41 307.4 31.4 254 177-458 8-282 (287)
14 cd08998 GH43_ABN_1 Glycosyl hy 100.0 1.5E-36 3.3E-41 305.4 31.0 257 177-459 1-282 (288)
15 cd08986 GH43_7 Glycosyl hydrol 100.0 3.9E-36 8.3E-41 300.7 25.0 233 178-437 3-254 (269)
16 cd08978 GH_F Glycosyl hydrolas 100.0 3.2E-35 7E-40 289.5 29.2 255 178-457 1-271 (271)
17 cd08982 GH43_3 Glycosyl hydrol 100.0 2.1E-35 4.6E-40 299.4 28.3 232 178-459 4-260 (295)
18 cd08980 GH43_1 Glycosyl hydrol 100.0 7.6E-33 1.7E-37 278.5 29.5 253 179-459 2-281 (288)
19 cd08772 GH43_62_32_68 Glycosyl 100.0 6.9E-29 1.5E-33 245.3 28.3 239 178-439 1-263 (286)
20 cd08984 GH43_5 Glycosyl hydrol 100.0 1.2E-28 2.6E-33 249.3 26.7 257 177-457 11-285 (294)
21 COG3507 XynB Beta-xylosidase [ 100.0 1.2E-26 2.6E-31 245.8 23.6 209 178-406 31-256 (549)
22 cd08983 GH43_4 Glycosyl hydrol 99.9 1.2E-24 2.6E-29 218.8 24.5 218 177-428 18-247 (276)
23 cd08987 GH62 Glycosyl hydrolas 99.9 1.1E-23 2.3E-28 209.8 22.9 199 178-408 25-242 (303)
24 cd08995 GH32_Aec43_like Glycos 99.9 1.4E-20 3E-25 188.5 24.9 202 180-400 3-221 (280)
25 cd08997 GH68 Glycosyl hydrolas 99.9 1.5E-20 3.2E-25 194.0 25.3 217 213-443 38-323 (349)
26 cd08992 GH43_like_1 Glycosyl h 99.9 1.6E-19 3.6E-24 186.2 26.3 200 175-408 35-250 (349)
27 cd08994 GH43_like_2 Glycosyl h 99.8 2.2E-18 4.9E-23 173.5 26.1 214 176-403 12-253 (291)
28 COG3940 Predicted beta-xylosid 99.8 3.3E-17 7.2E-22 155.6 24.4 219 250-480 67-321 (324)
29 cd08979 GH_J Glycosyl hydrolas 99.7 2.3E-16 4.9E-21 156.0 21.6 193 189-399 14-229 (276)
30 cd08996 GH32_B_Fructosidase Gl 99.7 6.8E-16 1.5E-20 155.9 22.7 177 180-377 7-201 (298)
31 cd08993 GH43_DUF377 Glycosyl h 99.6 1.3E-13 2.8E-18 137.6 22.1 217 179-420 2-237 (268)
32 cd08994 GH43_like_2 Glycosyl h 99.6 7.4E-14 1.6E-18 140.7 19.6 184 177-375 80-290 (291)
33 cd08990 GH43_AXH_like Glycosyl 99.6 6.4E-14 1.4E-18 140.2 18.9 206 83-329 31-248 (274)
34 cd08999 GH43_ABN_2 Glycosyl hy 99.6 9.5E-14 2.1E-18 139.1 18.7 211 85-329 32-263 (287)
35 TIGR01322 scrB_fam sucrose-6-p 99.5 3.8E-13 8.1E-18 144.2 20.1 169 188-376 36-224 (445)
36 smart00640 Glyco_32 Glycosyl h 99.5 5E-13 1.1E-17 142.9 20.3 177 181-377 14-215 (437)
37 PF02435 Glyco_hydro_68: Levan 99.5 1.4E-12 3E-17 136.8 21.0 250 156-426 51-377 (428)
38 cd08986 GH43_7 Glycosyl hydrol 99.5 5.6E-13 1.2E-17 133.6 16.8 204 85-329 38-257 (269)
39 cd09004 GH43_bXyl Glycosyl hyd 99.5 1.3E-12 2.8E-17 130.7 18.4 197 85-328 36-247 (275)
40 cd08772 GH43_62_32_68 Glycosyl 99.5 2.4E-12 5.2E-17 127.2 17.1 210 85-328 27-263 (286)
41 PF00251 Glyco_hydro_32N: Glyc 99.4 6.5E-12 1.4E-16 128.4 20.3 201 179-400 12-237 (308)
42 cd08988 GH43_ABN Glycosyl hydr 99.4 1.1E-11 2.4E-16 124.9 19.1 202 85-328 21-262 (279)
43 cd08995 GH32_Aec43_like Glycos 99.4 1.9E-11 4.2E-16 122.4 20.0 202 84-323 31-245 (280)
44 cd08991 GH43_bXyl_2 Glycosyl h 99.4 9.1E-12 2E-16 125.6 17.0 214 85-328 25-265 (294)
45 cd08981 GH43_2 Glycosyl hydrol 99.4 3.7E-11 8E-16 122.0 21.1 225 85-341 38-284 (291)
46 cd09003 GH43_AXH_1 Glycosyl hy 99.4 1.6E-11 3.5E-16 125.8 16.8 207 83-328 46-279 (311)
47 cd08998 GH43_ABN_1 Glycosyl hy 99.4 6E-11 1.3E-15 119.6 19.8 207 85-328 22-263 (288)
48 cd09002 GH43_XYL_3 Glycosyl hy 99.3 2E-11 4.3E-16 123.2 15.4 197 85-328 40-254 (280)
49 cd09000 GH43_XYL_1 Glycosyl hy 99.3 4.6E-11 1E-15 120.5 17.5 208 85-328 33-258 (288)
50 PF04616 Glyco_hydro_43: Glyco 99.3 7.2E-12 1.6E-16 125.0 11.2 209 85-328 35-260 (286)
51 cd08989 GH43_XYL Glycosyl hydr 99.3 9E-11 1.9E-15 117.7 18.3 201 85-328 33-250 (269)
52 cd08978 GH_F Glycosyl hydrolas 99.3 2.1E-10 4.6E-15 113.0 20.4 212 85-329 26-254 (271)
53 cd09001 GH43_XYL_2 Glycosyl hy 99.3 5.3E-11 1.1E-15 119.3 15.4 200 85-326 36-244 (269)
54 cd08982 GH43_3 Glycosyl hydrol 99.2 2.5E-10 5.5E-15 116.2 17.8 188 87-328 25-240 (295)
55 cd08985 GH43_6 Glycosyl hydrol 99.2 5.3E-10 1.1E-14 112.0 16.7 208 82-328 29-247 (265)
56 cd08984 GH43_5 Glycosyl hydrol 99.1 8.8E-09 1.9E-13 104.5 20.0 169 178-376 80-255 (294)
57 cd08992 GH43_like_1 Glycosyl h 99.1 2.6E-09 5.7E-14 110.8 16.1 76 249-327 188-269 (349)
58 cd08980 GH43_1 Glycosyl hydrol 99.1 8.5E-09 1.8E-13 104.0 18.5 213 85-328 23-260 (288)
59 COG1621 SacC Beta-fructosidase 99.0 8.5E-09 1.8E-13 110.8 18.1 175 180-375 45-235 (486)
60 cd08996 GH32_B_Fructosidase Gl 99.0 1.5E-08 3.4E-13 102.3 18.1 203 85-324 34-256 (298)
61 cd08983 GH43_4 Glycosyl hydrol 99.0 4.2E-08 9.2E-13 99.0 20.1 178 252-441 17-208 (276)
62 cd08979 GH_J Glycosyl hydrolas 99.0 2.1E-08 4.5E-13 99.2 17.5 159 84-275 34-210 (276)
63 cd08997 GH68 Glycosyl hydrolas 98.8 2.3E-07 5.1E-12 96.5 16.9 194 85-299 43-286 (349)
64 PF03664 Glyco_hydro_62: Glyco 98.7 1.9E-06 4.1E-11 84.3 20.6 196 178-407 26-240 (271)
65 PF00251 Glyco_hydro_32N: Glyc 98.7 8.8E-08 1.9E-12 98.0 11.9 221 64-323 22-266 (308)
66 TIGR01322 scrB_fam sucrose-6-p 98.7 5.7E-07 1.2E-11 96.7 18.1 207 85-324 57-285 (445)
67 smart00640 Glyco_32 Glycosyl h 98.7 5.1E-07 1.1E-11 96.9 17.1 201 85-323 40-269 (437)
68 cd08993 GH43_DUF377 Glycosyl h 98.6 1.9E-06 4E-11 86.2 17.2 138 255-401 2-155 (268)
69 COG3507 XynB Beta-xylosidase [ 98.5 2E-06 4.4E-11 92.7 15.6 209 85-326 55-286 (549)
70 PF04041 DUF377: Domain of unk 98.5 1.7E-05 3.8E-10 81.6 21.2 176 217-407 61-258 (312)
71 KOG0228 Beta-fructofuranosidas 98.0 6.7E-05 1.4E-09 80.2 12.8 162 188-366 69-248 (571)
72 cd08987 GH62 Glycosyl hydrolas 97.5 0.0041 8.8E-08 63.3 16.8 163 93-298 55-230 (303)
73 COG1621 SacC Beta-fructosidase 97.5 0.0022 4.8E-08 69.6 15.5 203 86-327 73-300 (486)
74 PF04041 DUF377: Domain of unk 97.2 0.0085 1.8E-07 61.8 14.7 144 250-406 29-193 (312)
75 PF02435 Glyco_hydro_68: Levan 96.7 0.0091 2E-07 63.7 9.8 188 91-299 108-350 (428)
76 KOG0228 Beta-fructofuranosidas 96.1 0.033 7.1E-07 60.2 9.9 152 64-260 72-247 (571)
77 COG2152 Predicted glycosylase 95.9 0.36 7.8E-06 49.4 15.7 179 215-407 60-258 (314)
78 PF13088 BNR_2: BNR repeat-lik 95.1 3.8 8.1E-05 40.4 21.0 196 179-400 50-249 (275)
79 COG2152 Predicted glycosylase 94.2 6.8 0.00015 40.4 19.3 117 252-374 30-161 (314)
80 PF13088 BNR_2: BNR repeat-lik 94.1 3.2 6.9E-05 40.9 16.7 172 215-399 15-198 (275)
81 COG3940 Predicted beta-xylosid 93.4 5.4 0.00012 39.2 16.1 180 118-328 67-278 (324)
82 PF13810 DUF4185: Domain of un 93.2 12 0.00026 38.8 24.6 168 263-441 103-307 (316)
83 PF03664 Glyco_hydro_62: Glyco 88.4 26 0.00056 35.2 15.6 172 253-444 25-211 (271)
84 PF13810 DUF4185: Domain of un 69.1 7 0.00015 40.6 4.8 68 256-329 234-307 (316)
85 cd00260 Sialidase Sialidases o 59.1 2.1E+02 0.0046 29.2 17.3 170 216-400 46-238 (351)
86 KOG3545 Olfactomedin and relat 54.8 1.2E+02 0.0027 30.5 10.3 68 306-378 122-190 (249)
87 smart00284 OLF Olfactomedin-li 43.0 65 0.0014 32.6 6.4 65 309-376 129-194 (255)
88 PF02191 OLF: Olfactomedin-lik 27.4 2.3E+02 0.0049 28.5 7.4 81 310-396 125-206 (250)
89 cd00260 Sialidase Sialidases o 25.4 7.3E+02 0.016 25.2 22.8 175 217-401 113-303 (351)
90 PRK10927 essential cell divisi 22.3 1.5E+02 0.0033 30.9 5.1 13 65-77 50-62 (319)
No 1
>cd08985 GH43_6 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=100.00 E-value=2.1e-56 Score=446.04 Aligned_cols=264 Identities=57% Similarity=1.031 Sum_probs=232.1
Q ss_pred EEeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeee
Q 011114 175 IQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLE 254 (493)
Q Consensus 175 I~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iW 254 (493)
|+|||++|++.+ ++||||+|++.... ..+++|.||+|+||+||+++|.||+..+. ...++..+.+|
T Consensus 1 i~ah~~~i~~~~--~~yY~ygs~~~~~~----------~~~~gi~~~sS~DLvnW~~~g~vl~~~~~--~~~~~~~~~~w 66 (265)
T cd08985 1 IQAHGGGILKVG--GTYYWYGENKGGGD----------TAFGGVSCYSSTDLVNWTFEGLALTPEED--SADLGPGRIIE 66 (265)
T ss_pred CccccCceEEEC--CEEEEEEEecCCCC----------cccccEEEEECCCCccceECceecccccc--ccccccCcEEE
Confidence 679999999864 89999999875321 24689999999999999999999987652 11234577899
Q ss_pred eceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCCCCCCCcCCceEEEcCCCcEEEEEEecCCCceE
Q 011114 255 RPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELH 334 (493)
Q Consensus 255 AP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~siDPsvF~DdDGk~YL~~g~~~n~~i~ 334 (493)
||+|+||+++|+|||||++.+.++...+||||+|++|+|||++.+...+.+..+|||+||+|+||++||+|+++.+..++
T Consensus 67 aP~v~y~~~~g~Y~m~~~~~~~~~~~~~igvA~Sd~p~Gpf~~~~~~~~~~~~~~Dp~vf~DdDG~~Yl~~~~~~~~~i~ 146 (265)
T cd08985 67 RPKVIYNAKTGKYVMWMHIDSSDYSDARVGVATSDTPTGPYTYLGSFRPLGYQSRDFGLFVDDDGTAYLLYSDRDNSDLY 146 (265)
T ss_pred CCeEEEeCCCCEEEEEEEeCCCCCcceeEEEEEeCCCCCCCEECCccCCCCCCccCCceEEcCCCCEEEEEecCCCCceE
Confidence 99999999999999999998655567899999999999999998766666788999999999999999999987667899
Q ss_pred EEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEECCCCCCceeCCCccccCCccceee
Q 011114 335 IGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMGNPCIGGNKVFRLT 414 (493)
Q Consensus 335 iaeLs~D~~~~~g~~~~i~~g~~~EgP~i~K~~G~YYL~yS~~tg~~~n~~v~~~Sdsp~GPwt~~g~Pv~~~~~~~~~~ 414 (493)
+++|++|++++.++...+..+...|||+|||++|+|||+||++++|.++...+++|++|+|||+..+++..++ .+
T Consensus 147 i~~L~~d~~~~~~~~~~~~~~~~~EaP~i~K~~g~YYL~~S~~t~~~~~~~~y~~s~s~~GP~~~~~~~~~~~-----~~ 221 (265)
T cd08985 147 IYRLTDDYLSVTGEVTTVFVGAGREAPAIFKRNGKYYLLTSGLTGWNPNDARYATATSILGPWTDLGNPGPGG-----ST 221 (265)
T ss_pred EEEeCCCcccccceEEEccCCCccccceEEEECCEEEEEEccCCCccCCceEEEEecCCCCCccccCcCCCCC-----Cc
Confidence 9999999999999887777788999999999999999999999999888777889999999999999885443 58
Q ss_pred ccCCCceEEEcccC-CcccEEEEEeEeCCCCCCCCeeEEEEEEE
Q 011114 415 TFFAQSTYVIPLAG-LPGLYIFMADRWNPADLRESRYIWLPLIV 457 (493)
Q Consensus 415 t~gsq~~~V~~~~G-~~~~yi~y~d~w~~~~~~~sR~v~lPl~~ 457 (493)
+|++|+++|++++| ++++||||||||++.++.++|||||||+|
T Consensus 222 t~~sq~~~v~~~~g~~~~~~~~~~drw~~~~~~~s~yvwlp~~~ 265 (265)
T cd08985 222 TYGSQTTFVLPVPGSKQTTYIYMGDRWNPSDLGDSRYVWLPLTF 265 (265)
T ss_pred EECCCcceEEEeCCCCCCEEEEEEcccCCCCCCCCEEEEEEeeC
Confidence 99999999999998 44789999999999999999999999975
No 2
>cd09003 GH43_AXH_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), xylanase (endo-alpha-L-arabinanase) as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose
Probab=100.00 E-value=1.1e-41 Score=347.72 Aligned_cols=257 Identities=21% Similarity=0.244 Sum_probs=183.3
Q ss_pred CCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccC-CCcccccccCCCCeeeeceEEEEccC--
Q 011114 188 SRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAA-EETNETHDLYKLNVLERPKVIYNDRT-- 264 (493)
Q Consensus 188 ~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~-~~~~~~~~~~~~~~iWAP~Viyn~~~-- 264 (493)
+|+||+|+|......-....+++....+++|.||+|+||+||+.++.||.. ....| ...+|||+|++ ++
T Consensus 18 ~g~yY~~~t~~~~~~~~~~~~~~~~~~~~~i~v~~S~DL~~W~~~g~v~~~~~~~~w------~~~~WAP~v~~--~~~~ 89 (311)
T cd09003 18 NGRVYVYTTNDDYEYDSNTIKDNNYYNINDITVISSDDMVNWTDHGEIFVPNGIAKW------AGNSWAPSIAV--KKIN 89 (311)
T ss_pred CCEEEEEeCCCCccccccccccCCccccCcEEEEECCCCCCcEEcccccCcCCCCCc------ccccCCCceEE--eccC
Confidence 377888877643100000000112235789999999999999999999973 22233 23689999998 55
Q ss_pred --CEEEEEEEEeCCCCCcceEEEEEeCCCCCCceec-cc-CC----C---CCCCcCCceEEEcCCCcEEEEEEecCC---
Q 011114 265 --GKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYL-YS-KR----P---HGFDSRDMTIFKDDDGVAYLVYSSEDN--- 330 (493)
Q Consensus 265 --GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~-~~-~~----p---~g~~siDPsvF~DdDGk~YL~~g~~~n--- 330 (493)
|+|||||++. ..+|+||+|++|+|||++. +. .. + ....+|||+||+|+||+.||+|++...
T Consensus 90 ~~gkyylyy~~~-----~~~igva~SdsP~GP~~~~~g~~l~~~~~~~~~~~~~~iDp~~f~DdDG~~Yl~~g~~~~~~~ 164 (311)
T cd09003 90 GKGKFYLYFANG-----GGGIGVLTADSPVGPWTDPLGKPLITGSTPGCAGVVWLFDPAVFVDDDGQGYLYFGGGVPGGR 164 (311)
T ss_pred CCCEEEEEEecC-----CCeEEEEEcCCCCCCcccCCCCeeecCCCCCccCCccccCCCeEECCCCCEEEEECCccCCCc
Confidence 9999999864 3569999999999999975 21 10 1 123479999999999999999986322
Q ss_pred ----CceEEEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCCC-----CCCCcEEEE-EECCCCCCceeC
Q 011114 331 ----SELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTG-----WAPNEALVH-AAESIMGPWEDM 400 (493)
Q Consensus 331 ----~~i~iaeLs~D~~~~~g~~~~i~~g~~~EgP~i~K~~G~YYL~yS~~tg-----~~~n~~v~~-~Sdsp~GPwt~~ 400 (493)
+.+++++|++|++++.++...+..+..+|||+|+|++|+|||+||...+ ...+|.+.+ +|++|+|||+..
T Consensus 165 ~~~~~~i~i~~l~~D~~~~~g~~~~i~~~~~~Egp~~~K~~G~YYL~ys~~~~~~~~~~~~~y~v~y~~s~~~~GP~~~~ 244 (311)
T cd09003 165 WANPNTARVIKLGDDMISVDGSAVTIDAPYFFEASGLHKINGTYYYSYCTNFGGRDPGKPPPGRIAYMTSKNPMGPFTYK 244 (311)
T ss_pred cccCCCEEEEEeCCCceeccCCceEccCCCceEeeeEEEECCEEEEEEeCCCCccCCCCCCceeEEEEEcCCCCCCcccC
Confidence 4799999999999999988777666789999999999999999996422 345677754 799999999987
Q ss_pred CCccccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCC----CCCCCeeEE-EEEEEcCCCCC
Q 011114 401 GNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPA----DLRESRYIW-LPLIVRGPADR 463 (493)
Q Consensus 401 g~Pv~~~~~~~~~~t~gsq~~~V~~~~G~~~~yi~y~d~w~~~----~~~~sR~v~-lPl~~~~~~~~ 463 (493)
+. ++...... ....+.+|++|++.+| +||++||..-.+. .....|+++ .||.|++ |+
T Consensus 245 g~-il~~~~~~-~~~~g~gH~s~~~~~g--~~y~vyH~~~~~~~~~~~~~~~R~~~i~~~~~~~--dG 306 (311)
T cd09003 245 GI-ILKNPGAF-FGNGGNNHHSIFEFKG--KWYIAYHARTLAKALGGATAGYRSPHIDELTYNE--DG 306 (311)
T ss_pred CE-eccCCccc-cCCccCCCccEEEeCC--eEEEEEeCCcCCccccCCCCceEEEEEEEEEECC--CC
Confidence 64 33321100 1123444556777766 8999998655442 124467765 7999986 55
No 3
>cd08988 GH43_ABN Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bla
Probab=100.00 E-value=1.2e-40 Score=334.56 Aligned_cols=252 Identities=20% Similarity=0.250 Sum_probs=187.7
Q ss_pred eCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCccccc--ccCCCCeeee
Q 011114 178 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETH--DLYKLNVLER 255 (493)
Q Consensus 178 hgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~--~~~~~~~iWA 255 (493)
|||+|++.+ ++||+|+|+. ++.|++|+||+||+.++.+|+.... |.. .....+.+||
T Consensus 1 ~DP~vi~~~--~~YY~~~T~~------------------g~~v~~S~DL~~W~~~g~~~~~~~~-~~~~~~~~~~~~~WA 59 (279)
T cd08988 1 HDPVIIKEG--DTWYVFGTGP------------------GITILSSKDLVNWTYSGSAFATEPT-WKKRVPPSFDGHLWA 59 (279)
T ss_pred CCCEEEEEC--CEEEEEEecC------------------CEEEEECCCcCCccccCccccCCCc-cccccCCCCCCCEec
Confidence 789999874 7999999852 5899999999999999999975432 221 1223467999
Q ss_pred ceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecc-----c----CCCCCCCcCCceEEEcCCCcEEEEEE
Q 011114 256 PKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLY-----S----KRPHGFDSRDMTIFKDDDGVAYLVYS 326 (493)
Q Consensus 256 P~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~-----~----~~p~g~~siDPsvF~DdDGk~YL~~g 326 (493)
|+|++ .+|+|||||++...+....+||||+|++|+|||++.+ . ..+.+..+|||++|+|+||+.||+|+
T Consensus 60 P~v~~--~~G~yylyys~~~~~~~~~~igva~s~~p~Gp~~~~~w~~~~~i~~~~~~~~~~~iDp~~f~DdDG~~Yl~~g 137 (279)
T cd08988 60 PDIYQ--HNGKFYLYYSVSAFGSNTSAIGLAVNKTIDGPSPDYGWEKGGVVISSDASDNYNAIDPAIIFDQHGQPWLSFG 137 (279)
T ss_pred ceEEE--ECCEEEEEEEeccCCCCCceEEEEEcCCCCCCCcCcCccccCceEecCCCCCCCccCCceEEcCCCCEEEEec
Confidence 99998 6799999999875544567999999999999998654 1 11224568999999999999999998
Q ss_pred ecCCCceEEEEcCCCCCCc--cccEEEeecC----ceeeeeEEEEECCEEEEEEeCC---CCCCCCcEEE-EEECCCCCC
Q 011114 327 SEDNSELHIGPLTSDYLDV--SNVVRRILVG----QHREAPALFKHLGTYYMVTSGC---TGWAPNEALV-HAAESIMGP 396 (493)
Q Consensus 327 ~~~n~~i~iaeLs~D~~~~--~g~~~~i~~g----~~~EgP~i~K~~G~YYL~yS~~---tg~~~n~~v~-~~Sdsp~GP 396 (493)
++. +.|+++||++|++++ .++...+..+ ...|||+|+|++|+||||+|.+ .+...+|.+. ++|++|+||
T Consensus 138 ~~~-~gi~~~eL~~d~~~~~~~~~~~~i~~~~~~~~~~Egp~i~k~~g~YYl~~S~g~~~~~~~~~y~v~~arS~~~~GP 216 (279)
T cd08988 138 SFW-GGIKLFELDKDTMKPAEPGELHSIAGRERSSAAIEAPFILYRGDYYYLFVSFGLCCRGGDSTYKIAVGRSKNITGP 216 (279)
T ss_pred ccC-CCEEEEEECcccCCccCCCcceEEeccCCCCCceEeeEEEEcCCeEEEEEEcCcccCCCCCCeEEEEEEeCCCCCC
Confidence 753 479999999999886 3555555432 5799999999999999999963 2345667665 579999999
Q ss_pred ceeC-CCccccCCcc--c--eeeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCeeEE-EEEEE
Q 011114 397 WEDM-GNPCIGGNKV--F--RLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIW-LPLIV 457 (493)
Q Consensus 397 wt~~-g~Pv~~~~~~--~--~~~t~gsq~~~V~~~~G~~~~yi~y~d~w~~~~~~~sR~v~-lPl~~ 457 (493)
|+.. ++|++..... + ...-.+.+|+.|++.+| ++||+||..-.. ....|.++ .||.|
T Consensus 217 y~~~~~~p~~~~~~~~~~~~~~~~~g~GH~~v~~~~g--~~~~~yH~~~~~--~~~~r~~~i~~l~~ 279 (279)
T cd08988 217 YLDKTGRSMLQGGGTILDKGNDRWVGPGHNSAYTDDG--KDYLVLHAYDAA--DNGEPKLKILPLHW 279 (279)
T ss_pred CCCCCCCCcccCCceEEEcCCCcEEcCCCCEEEeCCC--CEEEEEEEeeCC--CCCCcEEEEEeccC
Confidence 9996 8888753210 0 01223455667777665 788888865443 35567765 46643
No 4
>cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=100.00 E-value=1.5e-40 Score=332.19 Aligned_cols=254 Identities=25% Similarity=0.338 Sum_probs=198.5
Q ss_pred eeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeec
Q 011114 177 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERP 256 (493)
Q Consensus 177 ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP 256 (493)
.+||.|++++ |+||+|+|+.... ..+.++.+++|+||++|+.++.+|+..+..| ..+.+|||
T Consensus 8 ~~DP~i~~~~--g~yY~~~t~~~~~-----------~~~~~~~~~~S~Dl~~W~~~g~~l~~~~~~~-----~~~~~wAP 69 (275)
T cd09004 8 YADPEIRIFG--GTYYIYPTSDGAG-----------GEQTPFDVFSSKDLVNWTKEGIILDMADVSW-----ANRAAWAP 69 (275)
T ss_pred CCCCCeEEEC--CEEEEEEeccCCC-----------CCeeEEEEEECCCCCCceECcccccccCCcc-----cCCCcCCC
Confidence 3678888864 8999999875310 0146799999999999999999997653322 45679999
Q ss_pred eEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceec-ccC-C---CCCCCcCCceEEEcCCCcEEEEEEecCCC
Q 011114 257 KVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYL-YSK-R---PHGFDSRDMTIFKDDDGVAYLVYSSEDNS 331 (493)
Q Consensus 257 ~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~-~~~-~---p~g~~siDPsvF~DdDGk~YL~~g~~~n~ 331 (493)
+|++ .+|+|||||++. .+|+||+|++|+|||++. +.. . ..+..+|||+||+|+||+.||+|+++ +
T Consensus 70 ~v~~--~~g~yy~yys~~------~~i~va~s~~p~gp~~~~~~~p~~~~~~~~~~~iDp~vf~d~dG~~yl~~~~~--~ 139 (275)
T cd09004 70 SVIE--RNGKYYFYFSAN------GGIGVAVADSPLGPFKDALGKPLIDKFTFGAQPIDPDVFIDDDGQAYLYWGGW--G 139 (275)
T ss_pred eEEE--ECCEEEEEEEcC------CcEEEEEeCCCCCCCCCCCCCccccCCcCCCCccCCCeEECCCCCEEEEEcCc--C
Confidence 9998 679999999975 579999999999999973 211 1 12567999999999999999999864 4
Q ss_pred ceEEEEcCCCCCCccccEEEe--ecCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEE-EECCCCCCceeCCCccccCC
Q 011114 332 ELHIGPLTSDYLDVSNVVRRI--LVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVH-AAESIMGPWEDMGNPCIGGN 408 (493)
Q Consensus 332 ~i~iaeLs~D~~~~~g~~~~i--~~g~~~EgP~i~K~~G~YYL~yS~~tg~~~n~~v~~-~Sdsp~GPwt~~g~Pv~~~~ 408 (493)
.+.+++|++|+++++++...+ ......|||+|+|++|+|||+||.+....++|.+.+ +|++|+|||++.+++++...
T Consensus 140 ~~~i~~l~~d~~~~~~~~~~~~~~~~~~~EgP~i~k~~G~yyl~ys~~~~~~~~Y~~~ya~s~~~~GP~~~~~~~~~~~~ 219 (275)
T cd09004 140 HCNVAKLNEDMISFDGERDGSEITPKNYFEGPFMFKRNGIYYLMWSEGGWTDPDYHVAYAMADSPLGPFERPGNIILQQD 219 (275)
T ss_pred CEEEEEECCCcccccCcceeeeccCCCceecceEEEECCEEEEEEECCCCCCCCceEEEEEcCCCCCCcccCCcEeeeCC
Confidence 688999999999998876553 345689999999999999999997654556777765 69999999999876665432
Q ss_pred ccceeeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCeeEE-EEEEEcCCCCC
Q 011114 409 KVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIW-LPLIVRGPADR 463 (493)
Q Consensus 409 ~~~~~~t~gsq~~~V~~~~G~~~~yi~y~d~w~~~~~~~sR~v~-lPl~~~~~~~~ 463 (493)
. ...++.+|++|++.++..+||++||.+..+......|.++ .||.|++ |+
T Consensus 220 ~---~~~~g~gH~~~~~~~~~~~~~~~yh~~~~~~~~~~~R~~~i~~~~~~~--dG 270 (275)
T cd09004 220 P---GIATGPGHHSVVNVPGTDEWYIVYHRRPLPETDGNHRQTCIDRMEFNE--DG 270 (275)
T ss_pred C---CCcccCCCCEEEEeCCCCeEEEEEeCCCCCCCCCceeeEEEEEEEECC--CC
Confidence 1 3456777778888774447999999877655566778876 5999986 55
No 5
>cd08981 GH43_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=100.00 E-value=3.4e-40 Score=333.75 Aligned_cols=254 Identities=22% Similarity=0.332 Sum_probs=195.1
Q ss_pred EEeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeee
Q 011114 175 IQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLE 254 (493)
Q Consensus 175 I~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iW 254 (493)
++.|||.|++++.+|+||+|+|..... + ....+++.|++|+||+||+.++.+++..+..| ....+|
T Consensus 4 ~~~~DP~v~~~~~~g~yYl~~T~~~~~-~--------~~~~~gi~v~~S~DLv~W~~~g~~~~~~~~~~-----~~~~~W 69 (291)
T cd08981 4 IRIRDPFILADPETGTYYLYGTTDPNI-W--------GGEGTGFDVYKSKDLKDWEGPYPVFRPPDDFW-----ADDNFW 69 (291)
T ss_pred ccccCCEEEEECCCCEEEEEEecCccc-c--------ccCCCcEEEEECCChhcccccceeeccCCCcC-----cccccc
Confidence 568999999987679999999975321 0 12346899999999999999999997654432 356799
Q ss_pred eceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccc--CCCCCCCcCCceEEEcCCCcEEEEEEec----
Q 011114 255 RPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYS--KRPHGFDSRDMTIFKDDDGVAYLVYSSE---- 328 (493)
Q Consensus 255 AP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~--~~p~g~~siDPsvF~DdDGk~YL~~g~~---- 328 (493)
||+|++ .+|+|||||++...+....+++||+|++|+|||++... ..+.+..+|||++|+|+||+.||+|+..
T Consensus 70 AP~v~~--~~G~yyly~s~~~~~~~~~~~~va~s~~p~GP~~~~~~~~~~~~~~~~iDp~~f~DdDG~~Yl~~~~~~~~~ 147 (291)
T cd08981 70 APEVHE--YKGRYYMFATFHNPGGERRGTAILVSDSPEGPFVPHSDGPVTPEDWMCLDGTLYVDEDGKPWMVFCHEWVQV 147 (291)
T ss_pred CCeeee--eCCEEEEEEEeccCCCceeeEEEEECCCCCCCCEeCCCCccCCCCCceEcCceEEcCCCCEEEEEEeccccc
Confidence 999997 89999999998754334467999999999999998642 2234467899999999999999999752
Q ss_pred CCCceEEEEcCCCCCCccccEEEeec------------------CceeeeeEEEEE-CCEEEEEEeCCCCCCCCcEEEE-
Q 011114 329 DNSELHIGPLTSDYLDVSNVVRRILV------------------GQHREAPALFKH-LGTYYMVTSGCTGWAPNEALVH- 388 (493)
Q Consensus 329 ~n~~i~iaeLs~D~~~~~g~~~~i~~------------------g~~~EgP~i~K~-~G~YYL~yS~~tg~~~n~~v~~- 388 (493)
.++.|+++||++|++++.|+++.++. ....|||+|+|+ +|+|||+||.++ .++|.+.+
T Consensus 148 ~~~~i~~~eL~~d~~~~~ge~~~i~~~~~~~w~~~~~~~~~~~~~~~~EgP~i~k~~~G~YYl~yS~~~--~~~Y~~~~~ 225 (291)
T cd08981 148 YDGTIEAVRLSPDLSRAIGEPVLLFRASEAPWVREFGLIGRGSGGYVTDGPFLYRTKSGRLLMLWSSFS--DGGYAQGVA 225 (291)
T ss_pred CCCCEEEEEeCCCccccCCceEEEecCCcCCcccccccccccCCCeEeeCCEEEEeCCCcEEEEEEecC--CCCEEEEEE
Confidence 24679999999999998888776532 126799999995 899999999643 45677654
Q ss_pred EECC--CCCCceeCCCccccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCeeEEEEEEEcC
Q 011114 389 AAES--IMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPLIVRG 459 (493)
Q Consensus 389 ~Sds--p~GPwt~~g~Pv~~~~~~~~~~t~gsq~~~V~~~~G~~~~yi~y~d~w~~~~~~~sR~v~lPl~~~~ 459 (493)
+|++ |+|||++.++|++.. ..||+ ++|...+| +||++||.. . ....+|.+++||.+++
T Consensus 226 rs~s~~~~GPy~~~~~pi~~~-------~~GH~-s~v~~~~G--~~~~vyH~~-~--~~~~~~~~~~~~~~~~ 285 (291)
T cd08981 226 RSESGTLLGPWVQEPEPLISD-------DGGHG-MLFRTFDG--RLMLSLHTP-N--KHPDERPIFIEVDEDG 285 (291)
T ss_pred EcCCCCccCCcEECCCcccCC-------CCCCC-eeEEcCCC--CEEEEEECC-C--CCCCeeeEEEEEeecC
Confidence 6776 999999998887653 12332 24446666 588888755 2 3455778899999986
No 6
>cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of
Probab=100.00 E-value=2.1e-39 Score=323.98 Aligned_cols=254 Identities=23% Similarity=0.321 Sum_probs=192.1
Q ss_pred CCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceE
Q 011114 179 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKV 258 (493)
Q Consensus 179 gg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~V 258 (493)
||.|++. +|+||+|+|++.... .+ ....+.++.|++|+||+||+.+|.||+..+.. .+..+.+|||+|
T Consensus 2 DP~~~~~--~~~yy~~~t~~~~~~-----~~-~~~~~~~~~v~~S~Dl~~W~~~g~~l~~~~~~----~~~~~~~wAP~i 69 (274)
T cd08990 2 DPAAHVF--NGRVYIYTSHDEAGG-----GG-DDFCMNDYHVFSSPDLVNWTDHGVILSVTDFP----AWAKGQAWAPDV 69 (274)
T ss_pred CCCcEEE--CCEEEEEeCCCCCCC-----CC-CccccceEEEEECCCCCCcEECcccccCCCCC----ccccCCcCcCeE
Confidence 5667765 489999999864211 00 01346789999999999999999999865443 124678999999
Q ss_pred EEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCC-----CCCCCcCCceEEEcCCCcEEEEEEecCCCce
Q 011114 259 IYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR-----PHGFDSRDMTIFKDDDGVAYLVYSSEDNSEL 333 (493)
Q Consensus 259 iyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~-----p~g~~siDPsvF~DdDGk~YL~~g~~~n~~i 333 (493)
++ .+|+|||||++... ...++|+||+|++|+|||++..... +.+...|||++|+|+||+.||+|++. ..+
T Consensus 70 ~~--~~g~yy~yy~~~~~-~~~~~igva~s~~p~Gpw~~~~~~~~~~~~~~~~~~iDp~vf~d~dG~~yl~~~~~--~~~ 144 (274)
T cd08990 70 VE--KNGKYYLYFPARDK-DGGFAIGVAVSDSPAGPFKDAGGPILITTPSGGWYSIDPAVFIDDDGQAYLYWGGG--LGL 144 (274)
T ss_pred EE--ECCEEEEEEEeecC-CCceEEEEEEeCCCCCCCCCCCCccccccCCCCCCccCCcEEECCCCCEEEEECCc--CCE
Confidence 98 78999999998754 2457899999999999999875432 13567999999999999999999864 479
Q ss_pred EEEEcCCCCCCccccEEEee--------cCceeeeeEEEEECCEEEEEEeCCCCCCCCcEE-EEEECCCCCCceeCCCcc
Q 011114 334 HIGPLTSDYLDVSNVVRRIL--------VGQHREAPALFKHLGTYYMVTSGCTGWAPNEAL-VHAAESIMGPWEDMGNPC 404 (493)
Q Consensus 334 ~iaeLs~D~~~~~g~~~~i~--------~g~~~EgP~i~K~~G~YYL~yS~~tg~~~n~~v-~~~Sdsp~GPwt~~g~Pv 404 (493)
++++|++|+++++++.+.+. .....|||.|+|++|+|||+||.+. .+.+ +++|++|+|||+..+.++
T Consensus 145 ~~~~l~~d~~~~~~~~~~i~~~~~~~~~~~~~~EgP~i~k~~G~YYl~yS~~~----~~~~~~a~s~~p~GP~~~~g~~~ 220 (274)
T cd08990 145 RVAKLKPDMLSLKGEPVEIVITDGAGDELRRFFEAPWVHKRNGTYYLSYSTGD----PEEIAYATSDSPLGPFTYRGVIL 220 (274)
T ss_pred EEEEeCccccccCCCcEEEEeccccCCCCCCcccceeEEEECCEEEEEEECCC----CcEEEEEEcCCCCCCcccCcEEe
Confidence 99999999999988776653 2357899999999999999999754 2444 457999999999887655
Q ss_pred ccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCeeE-EEEEEEcCCCCC
Q 011114 405 IGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYI-WLPLIVRGPADR 463 (493)
Q Consensus 405 ~~~~~~~~~~t~gsq~~~V~~~~G~~~~yi~y~d~w~~~~~~~sR~v-~lPl~~~~~~~~ 463 (493)
... ...+.+|++|++.+| +|||+||..-...+....|.+ ..||.|++ |+
T Consensus 221 ~~~------~~~g~gh~~~~~~~g--~~y~~yh~~~~~~~~~~~R~~~~~~~~w~~--dG 270 (274)
T cd08990 221 DPP------VNGGTNHGSIVEFKG--QWYLFYHRATLSGGGDFRRSVCIDELEYNA--DG 270 (274)
T ss_pred cCC------CCCCCCCCeEEEECC--eEEEEEECCcCCCCCCcceeEEEEEEEECC--CC
Confidence 421 223444556777666 789988755444334556764 57999975 55
No 7
>cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended
Probab=100.00 E-value=5.7e-39 Score=321.02 Aligned_cols=253 Identities=19% Similarity=0.211 Sum_probs=181.9
Q ss_pred eeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeec
Q 011114 177 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERP 256 (493)
Q Consensus 177 ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP 256 (493)
.+||.|+++ +++||+++|... .++++.|++|+||+||+..|.++...+..+.........+|||
T Consensus 8 ~~DP~ii~~--~~~yY~~~t~~~--------------~~~g~~~~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~~~~WAP 71 (269)
T cd08989 8 NPDPSIIRA--GDDYYMASSTFE--------------WFPGVQIHHSTDLVNWHLIGHPLDRLEDLDMKGNPYSGGIWAP 71 (269)
T ss_pred CCCCcEEEE--CCeEEEEECccc--------------cCCCcEEEECCccCCCEEccccccCccccccccCCCCCcEEcc
Confidence 368899986 489999987532 2467999999999999999998876433211111124579999
Q ss_pred eEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCCCCCCCcCCceEEEcCCCcEEEEEEecCCCceEEE
Q 011114 257 KVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIG 336 (493)
Q Consensus 257 ~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~siDPsvF~DdDGk~YL~~g~~~n~~i~ia 336 (493)
+|++ .+|||||||++... ....+|+||+|++|+|||++... ....+|||++|+|+||+.||+|+++ ..|+++
T Consensus 72 ~v~~--~~G~yy~yy~~~~~-~~~~~i~va~sd~~~Gpw~~~~~---~~~~~IDp~~f~D~dG~~Yl~~~~~--~~i~l~ 143 (269)
T cd08989 72 CLSY--YDGKFWLIYTAVKV-WKDCHNYLFTAEDITGPWSRPIF---LNYGGFDPSLFHDDDGKKYLINMGW--SGIRLQ 143 (269)
T ss_pred eEEE--ECCEEEEEEecccc-CCCceEEEEEECCCCCCCcCCEE---CCCCcccCceEEcCCCCEEEEecCC--CcEEEE
Confidence 9998 79999999998743 24578999999999999996432 1236899999999999999999865 579999
Q ss_pred EcCCCCCCccccEE--Eeec---CceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEECCCCCCceeC-CCccccCCcc
Q 011114 337 PLTSDYLDVSNVVR--RILV---GQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDM-GNPCIGGNKV 410 (493)
Q Consensus 337 eLs~D~~~~~g~~~--~i~~---g~~~EgP~i~K~~G~YYL~yS~~tg~~~n~~v~~~Sdsp~GPwt~~-g~Pv~~~~~~ 410 (493)
+|++|...+.++.. .+.. ....|||+|+|++|+|||+||.......+...+++|++|+|||+++ ++|++.....
T Consensus 144 ~l~~~~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~G~YYl~~S~~~~~~~~~~~~~rs~~~~GP~~~~~~~pl~~~~~~ 223 (269)
T cd08989 144 EYSPAEKKLIGKPLNKVIIKGTDDGLTEGPHLYKINGKYYLTTAEGGTGYIHEETIARSDKIHGPYEGRPDNPLVLWDTP 223 (269)
T ss_pred EEChhhCCCCCCceeEEEecCCCCCccccceEEEECCEEEEEEeeCCCCCCeeEEEEEECCCCCCCCcCCCCcceeecCC
Confidence 99999887776544 2322 3579999999999999999996433333334456899999999998 5686532110
Q ss_pred ceeeccCCCceEEEcc-cCCcccEEEEEeEeCCCCCCCCee-EEEEEEE
Q 011114 411 FRLTTFFAQSTYVIPL-AGLPGLYIFMADRWNPADLRESRY-IWLPLIV 457 (493)
Q Consensus 411 ~~~~t~gsq~~~V~~~-~G~~~~yi~y~d~w~~~~~~~sR~-v~lPl~~ 457 (493)
.....+.+|+.|++. +| +||++||.. ........|. .+.||.|
T Consensus 224 -~~~~~g~GH~s~v~~~~G--~~~~~~h~~-~~~~~~~gR~~~l~~i~W 268 (269)
T cd08989 224 -GNPLQKCGHASLVETPDG--KWYLAHLTG-RPGFCPLGRETALQPIEW 268 (269)
T ss_pred -CCCcccCCCcCeEECcCC--CEEEEEEee-CCCCCccCcceEEEEEEe
Confidence 012234445556654 44 588887753 3322333466 5688887
No 8
>cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=100.00 E-value=2.8e-38 Score=318.12 Aligned_cols=258 Identities=19% Similarity=0.232 Sum_probs=188.2
Q ss_pred eCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeece
Q 011114 178 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPK 257 (493)
Q Consensus 178 hgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~ 257 (493)
.||.|++.+ ++||+++|... ...+|.|++|+||++|+.+|.+|+..+.....+......+|||+
T Consensus 9 ~DP~i~~~~--~~yy~~~t~~~--------------~~~~i~~~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~WAP~ 72 (288)
T cd09000 9 PDPSICRVG--DDYYLVTSSFE--------------YFPGVPIFHSKDLVNWELIGHALTRPSQLDLDGLPDSGGIWAPT 72 (288)
T ss_pred CCCCEEEEC--CEEEEEECCcc--------------cCCCceEEECCCcCCcEEcccccCCcccccccCCCCCCceEcce
Confidence 577888764 89999975421 13579999999999999999998754432211122456799999
Q ss_pred EEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCCCCCCCcCCceEEEcCCCcEEEEEEecC-------C
Q 011114 258 VIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSED-------N 330 (493)
Q Consensus 258 Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~siDPsvF~DdDGk~YL~~g~~~-------n 330 (493)
|++ .+|+|||||++.... ...+++||+|++|+|||++.... ...+|||+||+|+||+.||+|+++. .
T Consensus 73 v~~--~~g~yy~yy~~~~~~-~~~~~~v~~s~~p~gpw~~~~~~---~~~~iDp~vf~d~dG~~Y~~~~~~~~~~~~~~~ 146 (288)
T cd09000 73 IRY--HDGTFYLITTNVDGM-KDGGNFIVTADDPAGPWSDPVWL---DSGGIDPSLFFDDDGKVYLVGNGWDERRGYNGH 146 (288)
T ss_pred EEE--ECCEEEEEEEecCCC-CCCceEEEEeCCCCCCCcCCEec---CCCccCCceeEcCCCCEEEEecccCCccccCCC
Confidence 998 689999999987543 35689999999999999964321 2278999999999999999999753 2
Q ss_pred CceEEEEcCCCCCCccccEEEeecC---ceeeeeEEEEECCEEEEEEeCCCCCCCCcEE-EEEECCCCCCceeC-CCccc
Q 011114 331 SELHIGPLTSDYLDVSNVVRRILVG---QHREAPALFKHLGTYYMVTSGCTGWAPNEAL-VHAAESIMGPWEDM-GNPCI 405 (493)
Q Consensus 331 ~~i~iaeLs~D~~~~~g~~~~i~~g---~~~EgP~i~K~~G~YYL~yS~~tg~~~n~~v-~~~Sdsp~GPwt~~-g~Pv~ 405 (493)
+.|++++|++|+.++.++++.+..+ ...|||+|+|++|+|||+||.+.. ..++.+ +++|++|+|||++. ++|++
T Consensus 147 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~Egp~v~k~~g~YYl~ys~~~~-~~~~~v~~~~s~~~~Gp~~~~~~~~il 225 (288)
T cd09000 147 GGIWLQEIDLETGKLLGEPKVIWNGTGGRWPEGPHLYKRDGWYYLLIAEGGT-GYGHSVTVARSRSITGPYEPAPNNPIL 225 (288)
T ss_pred CcEEEEEEccccCCCCCCcEEEEeCCCCCCcccCeEEEECCEEEEEEecCCC-CCCeEEEEEEeCCCCCCCccCCCCceE
Confidence 5799999999988888877666543 589999999999999999986431 223454 45799999999986 67877
Q ss_pred cCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCC---CCCCCeeE-EEEEEEcC
Q 011114 406 GGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPA---DLRESRYI-WLPLIVRG 459 (493)
Q Consensus 406 ~~~~~~~~~t~gsq~~~V~~~~G~~~~yi~y~d~w~~~---~~~~sR~v-~lPl~~~~ 459 (493)
...........+.+|++|++.++ .+||++||.+-... .....|.+ ..||.|++
T Consensus 226 ~~~~~~~~~~~g~gH~~~~~~~d-G~~~~~yH~~~~~~~~~~~~~~R~~~i~~~~~~~ 282 (288)
T cd09000 226 TNRDLPDSPIQATGHADLVQTPD-GEWWAVFLATRPYGGKGFCPLGRETFLAPVTWEE 282 (288)
T ss_pred EcCCCCCCcceeCCccceEECCC-CCEEEEEEEEcCCCCCccCcCccccEEEEEEECC
Confidence 54210011223455566776633 27899888653322 22445764 58999985
No 9
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=100.00 E-value=3.2e-38 Score=314.67 Aligned_cols=257 Identities=27% Similarity=0.348 Sum_probs=192.2
Q ss_pred eeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeec
Q 011114 177 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERP 256 (493)
Q Consensus 177 ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP 256 (493)
.+||.|++.+ ++||+|+|.... ..+|.|++|+||+||+.++.++......+. ......|||
T Consensus 10 ~~DP~i~~~~--~~yY~~~t~~~~--------------~~~i~v~~S~DL~~W~~~g~~~~~~~~~~~---~~~~~~WAP 70 (286)
T PF04616_consen 10 YADPSIVRFG--DGYYLYGTTDPE--------------GPGIPVWSSKDLVNWTDAGNVLPPPPDWDW---ANNGNIWAP 70 (286)
T ss_dssp ECSEEEEEET--TEEEEEEEEBTC--------------ESBEEEEEESSSSSEEEEEECESSTTTTST---TTSETTEEE
T ss_pred CCCCEEEEEC--CEEEEEEEcCCC--------------CCeEEEEECCCCcccccceeeecccccccc---cccccccCC
Confidence 3688899864 779999987531 367999999999999999999887654321 112223999
Q ss_pred eEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCCCCCCCcCCceEEEcCCCcEEEEEEecCC----Cc
Q 011114 257 KVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDN----SE 332 (493)
Q Consensus 257 ~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~siDPsvF~DdDGk~YL~~g~~~n----~~ 332 (493)
+|++ .+|+|||||+.... ....+|+||+|++|+|||++.......+..+|||+||+|+||+.||+|+++.+ +.
T Consensus 71 ~i~~--~~g~yy~y~~~~~~-~~~~~~~va~a~~~~Gp~~~~~~~~~~~~~~iD~~vf~d~dG~~Yl~~~~~~~~~~~~~ 147 (286)
T PF04616_consen 71 EIHY--INGKYYMYYSDSGG-DAGSGIGVATADSPDGPWTDPGKIPIPGGNSIDPSVFVDDDGKYYLYYGSWDNGDPGGG 147 (286)
T ss_dssp EEEE--ETTEEEEEEEEEST-STTEEEEEEEESSTTS-EEEEEEEEEESSSSSSEEEEEETTSEEEEEEEESTTTSSEEE
T ss_pred eEEE--cCCeEEEEEEccCC-CCCcceeEEEeCCcccccccccceeeccccccCceEEEecCCCcEEeCcccCCCcccee
Confidence 9997 79999999994332 24678999999999999998764322267899999999999999999999754 36
Q ss_pred eEEEEcCCCCCCccccE-EEeec------CceeeeeEEEEECCEEEEEEeCCCCCCCCcEEE-EEECCCCCCceeC-CCc
Q 011114 333 LHIGPLTSDYLDVSNVV-RRILV------GQHREAPALFKHLGTYYMVTSGCTGWAPNEALV-HAAESIMGPWEDM-GNP 403 (493)
Q Consensus 333 i~iaeLs~D~~~~~g~~-~~i~~------g~~~EgP~i~K~~G~YYL~yS~~tg~~~n~~v~-~~Sdsp~GPwt~~-g~P 403 (493)
|.+++|++|++.+.++. ..+.. ....|||+|+|++|+|||+||++..+.+ |.+. ++|++|+|||+.. +++
T Consensus 148 i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~g~yYl~~s~~~~~~~-y~v~~~~s~~~~gp~~~~~~~~ 226 (286)
T PF04616_consen 148 IYIAELDPDGTSLTGEPVVVIFPGDEGWDGGVVEGPFVFKHGGKYYLFYSAGGTGSP-YQVGYARSDSPLGPWEWKKGNP 226 (286)
T ss_dssp EEEEEEETTTSSEEEEECEEEEEESGSSTTTBEEEEEEEEETTEEEEEEEESGSSTT-TEEEEEEESSTTSGGEETTTCB
T ss_pred EEeecccCccccccCcccccccccccccCCccccceEEEEcCCCEEEEEeccCCCCC-ceEEEeeccCCCCceeeccCCe
Confidence 99999999999988876 43332 3489999999999999999996544444 6555 5799999999987 566
Q ss_pred cccC-CccceeeccCCCceEEEcccCCcccEEEEEeEeC-CCCCCCCee-EEEEEEEcC
Q 011114 404 CIGG-NKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWN-PADLRESRY-IWLPLIVRG 459 (493)
Q Consensus 404 v~~~-~~~~~~~t~gsq~~~V~~~~G~~~~yi~y~d~w~-~~~~~~sR~-v~lPl~~~~ 459 (493)
++.. .. .....+.+|++|+..+.. +||++||.+-. .......|. .+.||.|++
T Consensus 227 ~~~~~~~--~~~~~g~gH~~~~~~~~g-~~~~~yh~~~~~~~~~~~~R~~~i~~v~~~~ 282 (286)
T PF04616_consen 227 ILFSRDG--ENGVYGPGHGSVFKDPDG-RWYIVYHARNPGGGGTGGGRSTRIQPVTWDA 282 (286)
T ss_dssp CEGTTBT--TSSCEEEEEEEEEEETTS-EEEEEEEEEETSTSTGTTCEEEEEEEEEEET
T ss_pred EEEeecc--CCccccCccCCEEECCCC-CEEEEEeeccCCCCCCCCCcEEEEEEEEECC
Confidence 5442 11 124455566667766432 48999987665 233455676 558999986
No 10
>cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended subs
Probab=100.00 E-value=3.9e-38 Score=316.94 Aligned_cols=248 Identities=21% Similarity=0.249 Sum_probs=182.2
Q ss_pred CCcEEe---eCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccC
Q 011114 172 GAPIQA---HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLY 248 (493)
Q Consensus 172 G~pI~a---hgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~ 248 (493)
.|||.. +||.|+++ +++|||++|... ...++.||+|+||+||+.++.+++..
T Consensus 7 ~nPv~~~~~~DP~i~~~--~~~yY~~~t~~~--------------~~~gi~i~~S~DL~~W~~~g~~~~~~--------- 61 (280)
T cd09002 7 RNPILAGDYPDPSILRD--GEDYYMTHSSFK--------------YTPGLVIWHSRDLVNWTPVGPALPEY--------- 61 (280)
T ss_pred eCCccCCCCCCCEEEEE--CCEEEEEEcchh--------------cCCCEEEEECCCcCCceEccccccCC---------
Confidence 455543 58899986 489999887421 24579999999999999999888642
Q ss_pred CCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCCCCCCCcCCceEEEcCCCcEEEEEEec
Q 011114 249 KLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSE 328 (493)
Q Consensus 249 ~~~~iWAP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~siDPsvF~DdDGk~YL~~g~~ 328 (493)
...+|||+|++ .+|||||||++...+ ...+|+||+|++|+|||++..... ...+|||+||+|+||+.||+|+
T Consensus 62 -~~~~WAP~i~~--~~gkyy~yys~~~~~-~~~~~~va~ad~p~Gpw~~~~~~~--~~~~IDp~vf~DddG~~Yl~~~-- 133 (280)
T cd09002 62 -EGDVWAPDLCK--YDGRYYIYFPAIPEG-GNWTNMVIWADSPEGPWSKPIDLK--IGGCIDPGHVVDEDGNRYLFLS-- 133 (280)
T ss_pred -CCCEEcCeeEE--ECCEEEEEEEeecCC-CCceEEEEEECCCCCCCcCCEecC--CCCccCCceEEcCCCCEEEEEC--
Confidence 24599999997 899999999998643 357899999999999999753221 1236999999999999999986
Q ss_pred CCCceEEEEcCCCCCCccccEEEeec-----------CceeeeeEEEEECCEEEEEEeCCCCCCC--CcEE-EEEECCCC
Q 011114 329 DNSELHIGPLTSDYLDVSNVVRRILV-----------GQHREAPALFKHLGTYYMVTSGCTGWAP--NEAL-VHAAESIM 394 (493)
Q Consensus 329 ~n~~i~iaeLs~D~~~~~g~~~~i~~-----------g~~~EgP~i~K~~G~YYL~yS~~tg~~~--n~~v-~~~Sdsp~ 394 (493)
.+.+++|++|+++++|+...+.. +..+|||+|+|++|+|||+||.+..+.+ .+.+ +++|++|+
T Consensus 134 ---~~~~~~l~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~g~YYl~yS~g~~~~~~~~~~v~~ars~s~~ 210 (280)
T cd09002 134 ---GGDRVRLTADGLSTDGKLEHVYDGWRYPEDWVVEGFALEGPKLKKRNGYYYLTTAVGGTAGPPTGHMVVAARSKSVH 210 (280)
T ss_pred ---CeeEEEECccccEecCcCEEEecCcccccccccCCcccccceEEEECCEEEEEEccCCCCCCCCCEEEEEEECCCCC
Confidence 35688999999998887665542 2358999999999999999995333333 2334 45799999
Q ss_pred CCceeC-CCccccCCccceeeccCCCceEEEcc-cCCcccEEEEEeEeCCCCCCCCeeE-EEEEEEcC
Q 011114 395 GPWEDM-GNPCIGGNKVFRLTTFFAQSTYVIPL-AGLPGLYIFMADRWNPADLRESRYI-WLPLIVRG 459 (493)
Q Consensus 395 GPwt~~-g~Pv~~~~~~~~~~t~gsq~~~V~~~-~G~~~~yi~y~d~w~~~~~~~sR~v-~lPl~~~~ 459 (493)
|||++. ++|++..... ...-.+.+|++|+.. +| +||++||..- .......|.+ ..||+|++
T Consensus 211 GP~~~~~~~pi~~~~~~-~~~~~g~GH~~i~~~~~g--~~~~vyH~~~-~~~~~~gR~~~l~~l~w~~ 274 (280)
T cd09002 211 GPWENSPYNPLVRTQSP-QEPWWSKGHATLVDGPDG--QWWMVYHAYE-KGYLTLGRQTLLEPIEWTE 274 (280)
T ss_pred CCCccCCCCcEEecCCC-CCCceeCCCCcEEECCCC--CEEEEEEeec-CCCCCCCcEEEEEEEEECC
Confidence 999998 6888864210 011124455667765 44 7888887432 2222334775 57999975
No 11
>cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=100.00 E-value=7.4e-38 Score=312.97 Aligned_cols=240 Identities=18% Similarity=0.255 Sum_probs=175.0
Q ss_pred eeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCccc-----ccccCCCC
Q 011114 177 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNE-----THDLYKLN 251 (493)
Q Consensus 177 ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~-----~~~~~~~~ 251 (493)
.+||.|++. +++||+|+|+.. .+++|.|++|+||+||+.++.+++..+... ........
T Consensus 11 ~~DP~v~~~--~~~yY~~~t~~~--------------~~~gi~v~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (269)
T cd09001 11 YPDPDVIRV--GDDYYMVSTTMH--------------YSPGAPILHSKDLVNWEIIGYVYDRLDDGDAYNLENGGNAYGK 74 (269)
T ss_pred CCCCeEEEE--CCEEEEEECCcc--------------cCCCCEEEEcccccCCeEcccccccccccccccccccCCCCCC
Confidence 378899986 489999998632 146799999999999999999887543211 10011245
Q ss_pred eeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCCCCCCCcCCceEEEcCCCcEEEEEEecCCC
Q 011114 252 VLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNS 331 (493)
Q Consensus 252 ~iWAP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~siDPsvF~DdDGk~YL~~g~~~n~ 331 (493)
.+|||+|++ .+|||||||++. ..+++||+|++|+|||++.+... .+|||++|+|+||+.||+|++.
T Consensus 75 ~~WAP~v~~--~~gkyy~yys~~-----~~~~~v~~a~~p~Gpw~~~~~~~----~~iDp~~f~D~dG~~Yl~~~~~--- 140 (269)
T cd09001 75 GQWAPSLRY--HNGTFYVFFCTN-----TGGTYIYTADDPEGPWTKTALDG----GYHDPSLLFDDDGTAYLVYGGG--- 140 (269)
T ss_pred CEECCceEE--ECCEEEEEEEec-----CCCeEEEEcCCCCCCCcCCCcCC----CcccCceEEcCCCCEEEEeCCC---
Confidence 799999998 699999999986 24689999999999999865321 6899999999999999999853
Q ss_pred ceEEEEcCCCCCCccccEEEeec-----CceeeeeEEEEECCEEEEEEeCCCCCCCCcEE-EEEECCCCCCceeCCCccc
Q 011114 332 ELHIGPLTSDYLDVSNVVRRILV-----GQHREAPALFKHLGTYYMVTSGCTGWAPNEAL-VHAAESIMGPWEDMGNPCI 405 (493)
Q Consensus 332 ~i~iaeLs~D~~~~~g~~~~i~~-----g~~~EgP~i~K~~G~YYL~yS~~tg~~~n~~v-~~~Sdsp~GPwt~~g~Pv~ 405 (493)
.|+++||++|++++.++.+.+.. ...+|||+|+|++|+|||+||+.. ...+.+ +++|++|+|||+... ++
T Consensus 141 ~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~Egp~i~k~~G~YYl~~S~~~--~~~~~~~~~~s~~~~GP~~~~~--~~ 216 (269)
T cd09001 141 TIRLVELSPDLTGVGGKDQVIIDAGEEIGLGAEGSHLYKINGYYYIFNIAWG--GGGRTQTCLRSKSLTGPYESKV--VL 216 (269)
T ss_pred cEEEEEECcccCCcCCCceEEEeCCCccccccccCeEEEECCEEEEEEecCC--CCCceEEEEEeCCCCCCcCCcc--ee
Confidence 79999999999998766555543 258999999999999999999754 223444 468999999999864 33
Q ss_pred cCCccceeeccCCCceEEEcc-cCCcccEEEEEeEeCCCCCCCCeeEEEEEEEc
Q 011114 406 GGNKVFRLTTFFAQSTYVIPL-AGLPGLYIFMADRWNPADLRESRYIWLPLIVR 458 (493)
Q Consensus 406 ~~~~~~~~~t~gsq~~~V~~~-~G~~~~yi~y~d~w~~~~~~~sR~v~lPl~~~ 458 (493)
.... ....+.+|+++++. +| +||+++|+... ...++....||.|+
T Consensus 217 ~~~~---~~~~~~gh~~~~~~~~G--~~~~~~~~~~~---~~gR~~~~~~~~w~ 262 (269)
T cd09001 217 EDGS---TGGNGPHQGGIVDTPDG--EWYFMLFQDRG---AVGRIPHLAPVTWE 262 (269)
T ss_pred cCCC---CCCCCCCCEEEEECCCC--CEEEEEcCCCC---CCCCEEEEEEEEEE
Confidence 2111 12233444556655 44 56666654221 12233466899997
No 12
>cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=100.00 E-value=3e-37 Score=310.63 Aligned_cols=255 Identities=27% Similarity=0.356 Sum_probs=194.4
Q ss_pred CCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceE
Q 011114 179 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKV 258 (493)
Q Consensus 179 gg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~V 258 (493)
||+|++++ |+||||+|.... ..+|.+++|+||++|+.++.++...+..| ....+|||+|
T Consensus 2 DP~v~~~~--g~yyl~~t~~~~--------------~~~i~~~~S~Dl~~W~~~~~~~~~~~~~~-----~~~~~waP~v 60 (294)
T cd08991 2 DPFVLRYN--GKYYAYGTGGAD--------------GRGFAVYSSPDLVDWKLHGGALLALDDDW-----GRRGFWAPEV 60 (294)
T ss_pred CCeEEEEC--CEEEEEEeCCCC--------------CCeeEEEECCCCCCceECCccccCCCCCc-----cCCcEEccEE
Confidence 67888864 899999987531 35699999999999999999887654333 3567999999
Q ss_pred EEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccC-CCCCCCcCCceEEEcCCCcEEEEEEecCC----Cce
Q 011114 259 IYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSK-RPHGFDSRDMTIFKDDDGVAYLVYSSEDN----SEL 333 (493)
Q Consensus 259 iyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~-~p~g~~siDPsvF~DdDGk~YL~~g~~~n----~~i 333 (493)
++ .+|+|||||++...+...++|+||+|++|+|||++.+.. ...+..+|||++|+|+||++||+|+...+ ..|
T Consensus 61 ~~--~~g~yyl~ys~~~~~~~~~~i~~a~s~~p~gp~~~~~~~~~~~~~~~iD~~vf~d~dG~~yl~~~~~~~~~~~~~i 138 (294)
T cd08991 61 YY--YNGKFYMYYSANDRDEKTEHIGVAVSDSPLGPFRDIKKPPIDFEPKSIDAHPFIDDDGKPYLYYSRNNYGNRVSDI 138 (294)
T ss_pred EE--ECCEEEEEEEeccCCCCcceEEEEEeCCCCCCCCcCCCCcccCCCcccCCceEECCCCCEEEEEEecCCCCcccce
Confidence 98 779999999987654456899999999999999986432 22345789999999999999999987532 358
Q ss_pred EEEEcCCCCCCccccEEEee---------------------cCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEE-EEC
Q 011114 334 HIGPLTSDYLDVSNVVRRIL---------------------VGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVH-AAE 391 (493)
Q Consensus 334 ~iaeLs~D~~~~~g~~~~i~---------------------~g~~~EgP~i~K~~G~YYL~yS~~tg~~~n~~v~~-~Sd 391 (493)
.+++|+.|++++.++...+. .....|||+|+|++|+|||+||++.....+|.+.+ +|+
T Consensus 139 ~~~~l~~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~EgP~~~k~~g~yyl~ys~~~~~~~~y~~~~a~s~ 218 (294)
T cd08991 139 YGTELVDDKLSIKTELVGPPIPVSAPGIDEIFERWRFGEGKDWRTNEGPTVLKHNGRYYLTYSANHYENEDYGVGYATAD 218 (294)
T ss_pred EEEEEccceeeeccceeeccccccccccccccccccccccccCceeeCcEEEEECCEEEEEEECCCCCCCCceEEEEEcC
Confidence 99999999988765543211 12479999999999999999997655556676654 699
Q ss_pred CCCCCceeC-CCccccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCeeEE-EEEEEcC
Q 011114 392 SIMGPWEDM-GNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIW-LPLIVRG 459 (493)
Q Consensus 392 sp~GPwt~~-g~Pv~~~~~~~~~~t~gsq~~~V~~~~G~~~~yi~y~d~w~~~~~~~sR~v~-lPl~~~~ 459 (493)
+|+|||++. ++||+..... ....+.+|+.|++.++..++|++||.+....+. ..|+++ .||.|++
T Consensus 219 ~~~gp~~~~~~~pl~~~~~~--~~~~g~gh~~~~~~~~g~~~~~~yh~~~~~~~~-~~R~~~~~~~~~~~ 285 (294)
T cd08991 219 SPLGPWTKYSNNPILRRNGD--KGVEGTGHNSVVKSPDGGELYIVYHAHNATDEV-EPRTMRIDPLYFKD 285 (294)
T ss_pred CCCCCcEecCCCceEeeCCC--CceEeCCCCceEECCCCCEEEEEEeeecCCCCC-CCceEEEEEEEEcC
Confidence 999999997 7898875421 113456666677765323688888876655433 567755 8999986
No 13
>cd08999 GH43_ABN_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=100.00 E-value=4.7e-37 Score=307.37 Aligned_cols=254 Identities=23% Similarity=0.283 Sum_probs=191.2
Q ss_pred eeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeec
Q 011114 177 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERP 256 (493)
Q Consensus 177 ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP 256 (493)
.+||+|++. +|+||||+|... ..+|.+++|+||+||+.++.+|+..+.. .....+|||
T Consensus 8 ~~DP~i~~~--~g~yy~~~t~~~---------------~~~i~~~~S~Dl~~W~~~g~~l~~~~~~-----~~~~~~waP 65 (287)
T cd08999 8 FPDPSVIRV--DGTYYAYATNGN---------------GPNVPIATSTDLVNWTYLGDAFPKLPRW-----WTGGDFWAP 65 (287)
T ss_pred CCCCeEEEE--CCEEEEEEeCCC---------------CCcEEEEECCCCCCcEECCcccCCCCCc-----ccCCCccCc
Confidence 478899986 599999999642 1579999999999999999988765432 235679999
Q ss_pred eEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCC----CCCCCcCCceEEEcCCCcEEEEEEecCC--
Q 011114 257 KVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR----PHGFDSRDMTIFKDDDGVAYLVYSSEDN-- 330 (493)
Q Consensus 257 ~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~----p~g~~siDPsvF~DdDGk~YL~~g~~~n-- 330 (493)
+|++ .+|+|||||++...+....+|++|+|++|+|||+..+... ..+...|||+||+|+||++||+|++..+
T Consensus 66 ~v~~--~~g~y~~~y~~~~~~~~~~~i~~a~s~~p~g~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~~Yl~~~~~~~~~ 143 (287)
T cd08999 66 DVSY--VNGKYVLYYSARDKGSGGQCIGVATADSPLGPFTDHGKPPLCCPEGEGGAIDPSFFTDTDGKRYLVWKSDGNSI 143 (287)
T ss_pred eEEE--ECCEEEEEEEeecCCCCCEEEEEEECCCCCCCCccCCcceEecCCCCCCccCCCeEECCCCCEEEEEeccCCCC
Confidence 9998 6799999999976533467899999999999999765321 2346789999999999999999997532
Q ss_pred ---CceEEEEcCCCCCCccccEEEee------cCceeeeeEEEEECCEEEEEEeCCCCCCC--CcEEE-EEECCCCCCce
Q 011114 331 ---SELHIGPLTSDYLDVSNVVRRIL------VGQHREAPALFKHLGTYYMVTSGCTGWAP--NEALV-HAAESIMGPWE 398 (493)
Q Consensus 331 ---~~i~iaeLs~D~~~~~g~~~~i~------~g~~~EgP~i~K~~G~YYL~yS~~tg~~~--n~~v~-~~Sdsp~GPwt 398 (493)
..+++++|++|++++.++...++ .+..+|||.|+|++|+|||+||....... +|.+. ++|++|+|||+
T Consensus 144 ~~~~~i~~~~ls~d~~~~~~~~~~i~~~~~~~~~~~~EgP~i~k~~g~yyl~~S~~~~~~~~~~y~i~~~~s~~~~Gpw~ 223 (287)
T cd08999 144 GKPTPIYLQELSADGLTLTGEPVRLLRNDEDWEGPLVEAPYLVKRGGYYYLFYSAGGCCSGASTYAVGVARSKSLLGPYV 223 (287)
T ss_pred CCCceEEEEEeCCCCccccCCcEeeecccccccCCceEeeEEEEECCEEEEEEEcCCccCCCCCEEEEEEEeCCCcCCcC
Confidence 13889999999998888765553 23579999999999999999997533333 57665 57999999999
Q ss_pred eC-CCccccCCccceeeccCCCceEEEcc-cCCcccEEEEEeEeCCCCCCCCeeE-EEEEEEc
Q 011114 399 DM-GNPCIGGNKVFRLTTFFAQSTYVIPL-AGLPGLYIFMADRWNPADLRESRYI-WLPLIVR 458 (493)
Q Consensus 399 ~~-g~Pv~~~~~~~~~~t~gsq~~~V~~~-~G~~~~yi~y~d~w~~~~~~~sR~v-~lPl~~~ 458 (493)
+. ++|+...... ....+.+|+.++.. +| +||++||.+..++.....|.+ +.||.|+
T Consensus 224 ~~~~~~~~~~~~~--~~~~g~gh~~~~~~~~g--~~~~~yh~~~~~~~~~~~R~~~i~~~~~~ 282 (287)
T cd08999 224 KAPGPPLLTSSGN--GRWVGPGHNTVVTDDDG--RDWLLYHAWDKADSGFTGRQMYLDRLEWE 282 (287)
T ss_pred CCCCCcceeccCC--CeEEcCCCCeEEECCCC--CEEEEEEEEcCCCCCCCCceEEEEEEEeE
Confidence 98 4556541111 12334444455554 44 689999877665434455664 4799993
No 14
>cd08998 GH43_ABN_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=100.00 E-value=1.5e-36 Score=305.40 Aligned_cols=257 Identities=21% Similarity=0.224 Sum_probs=187.1
Q ss_pred eeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCccc-ccccCCCCeeee
Q 011114 177 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNE-THDLYKLNVLER 255 (493)
Q Consensus 177 ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~-~~~~~~~~~iWA 255 (493)
+|||.|++.+ ++||||+|.. +|.|++|+||++|+.++.+|...+..+ ..+......+||
T Consensus 1 ~~DP~v~~~~--~~yyl~~t~~------------------~i~i~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~~wA 60 (288)
T cd08998 1 VHDPSIIKEG--DTYYLFSTGN------------------GIAIAKSKDLGNWTYVGSVFPTGPPWWSSIDPGGSGNLWA 60 (288)
T ss_pred CCCCeEEEEC--CEEEEEEcCC------------------CeEEEECCCCCCcEECCccccCCCccccccccCCCCCccC
Confidence 4889999875 7999998852 589999999999999999987644200 011234677999
Q ss_pred ceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCC-CCCceecccCCC-----CCCCcCCceEEEcCCCcEEEEEEecC
Q 011114 256 PKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYP-TGPFDYLYSKRP-----HGFDSRDMTIFKDDDGVAYLVYSSED 329 (493)
Q Consensus 256 P~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP-~GPf~~~~~~~p-----~g~~siDPsvF~DdDGk~YL~~g~~~ 329 (493)
|+|++ .+|+|||||++........+|++|+|++| +|||++.+.... .+...|||+||+|+||+.||+|++..
T Consensus 61 P~v~~--~~g~yyl~ys~~~~~~~~~~i~va~s~~~~~gpw~~~~~v~~~~~~~~~~~~iDp~vf~d~dG~~Yl~~~~~~ 138 (288)
T cd08998 61 PDVIY--LNGKYYLYYSVSTFGSNRSAIGLATSDTLPDGPWTDHGIVIESGPGRDDPNAIDPNVFYDEDGKLWLSFGSFW 138 (288)
T ss_pred CeEEE--ECCEEEEEEEEEeCCCCceEEEEEEeCCCCCCCCEEcceeeecCCCCCCcccccCCEEEcCCCCEEEEeeecc
Confidence 99998 69999999998764445678999999999 999998643211 23468999999999999999999753
Q ss_pred CCceEEEEcCCCCCCccc---cEEEeec----CceeeeeEEEEECCEEEEEEeCCCCC---CCCcEEE-EEECCCCCCce
Q 011114 330 NSELHIGPLTSDYLDVSN---VVRRILV----GQHREAPALFKHLGTYYMVTSGCTGW---APNEALV-HAAESIMGPWE 398 (493)
Q Consensus 330 n~~i~iaeLs~D~~~~~g---~~~~i~~----g~~~EgP~i~K~~G~YYL~yS~~tg~---~~n~~v~-~~Sdsp~GPwt 398 (493)
..+++++|++|...... ..+.+.. ....|||+|+|++|+|||+||.+... ..+|.+. ++|++|+|||+
T Consensus 139 -~~i~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~Egp~~~k~~g~YYl~~S~~~~~~~~~~~y~v~~~~s~~~~GP~~ 217 (288)
T cd08998 139 -GGIFLVELDPKTGKPLYPGGYGYNIAGRPRGHGAIEAPYIIYRGGYYYLFVSYGGCCAGEDSTYNIRVGRSKSITGPYV 217 (288)
T ss_pred -CCEEEEEeCcccCCccCCCCcceEEeccCCCCCceeeeEEEEeCCEEEEEEEcchhcCCCCCceEEEEEEcCCCCCCcC
Confidence 57999999998433322 2444433 34799999999999999999964322 3567765 57999999999
Q ss_pred eC-CCccccCCcc---c--eeeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCee-EEEEEEEcC
Q 011114 399 DM-GNPCIGGNKV---F--RLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRY-IWLPLIVRG 459 (493)
Q Consensus 399 ~~-g~Pv~~~~~~---~--~~~t~gsq~~~V~~~~G~~~~yi~y~d~w~~~~~~~sR~-v~lPl~~~~ 459 (493)
.. ++|++..... + .....+.+|+.|++.++ .+||++||.+.... ...|. .+.||.|++
T Consensus 218 ~~~g~~~~~~~~~~~~~~~~~~~~g~GH~~~~~~~~-g~~~~~yH~~~~~~--~~~r~~~i~~l~w~~ 282 (288)
T cd08998 218 DRNGNDMLNGGGTLYLLSSNGGYVGPGHNSVFTDDD-GKDYLVYHYYDAND--GGDHELRIRQLFWNE 282 (288)
T ss_pred CCCCCchhhCCCcceeeccCCeEEcCCCCEEEECCC-CCEEEEEEEEeCCC--CCccEEEEEEEEECC
Confidence 75 7887653110 0 01233445555665544 37899998776652 23465 558999974
No 15
>cd08986 GH43_7 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=100.00 E-value=3.9e-36 Score=300.72 Aligned_cols=233 Identities=21% Similarity=0.319 Sum_probs=170.4
Q ss_pred eCCceEEECCCCEEEEEEEecCCC-ccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCccc-----c-cccCCC
Q 011114 178 HGGGILYDERSRTYFWYGEYKDGP-TYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNE-----T-HDLYKL 250 (493)
Q Consensus 178 hgg~Ii~~~~~g~YY~ygT~~~~~-~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~-----~-~~~~~~ 250 (493)
|||.|++++ +|+|||++|..... .+...+ ....+|.||+|+||+||+.++.+++..+... . ...+..
T Consensus 3 rDP~v~~~~-dg~Yy~~~T~~~~~~~~~~~~-----~~~~gi~i~~S~DLv~W~~~g~v~~~~~~~~~~~~~~~~~~~~~ 76 (269)
T cd08986 3 RDTYVTLGP-DGYYYLTGTTPPPGLPFEDCS-----IVNDGIPLWRSKDLKKWESLGLIWDREKDATWQSYWIDEDDWYK 76 (269)
T ss_pred cCCeEEecC-CCcEEEEEccCCccccccccc-----cCCCceEEEeCccccCccccCcccccCCcccccccccccCCccc
Confidence 688999874 57999999975311 000000 2357899999999999999999987654211 0 011235
Q ss_pred CeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCCCCCCCcCCceEEEcCCCcEEEEEEecCC
Q 011114 251 NVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDN 330 (493)
Q Consensus 251 ~~iWAP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~siDPsvF~DdDGk~YL~~g~~~n 330 (493)
+.+|||+|++ .+|+|||||++...+....+|++|+|++|+|||++.....+ ....|||++|+|+||+.||+|++.
T Consensus 77 ~~~WAP~v~~--~~g~yyl~~s~~~~~~~~~~i~va~a~~p~Gp~~~~~~~~~-~~~~iD~~~f~D~DG~~Yl~~~~~-- 151 (269)
T cd08986 77 NAVWAPELHY--IKGRWYLVACMNNPGYGGSSILLSTSGKIEGPYKHITGNKP-LFPGIDPSLFEDDDGKVYLVWHNT-- 151 (269)
T ss_pred CCcCCceEEE--ECCEEEEEEEccCCCCCceEEEEEeCCCCCCCcEeccCCCC-CCCccCCceEEcCCCCEEEEeeCC--
Confidence 6799999998 78999999998754445678999999999999998643212 246899999999999999999842
Q ss_pred CceEEEEcCCCCCCccccEEEeec-------CceeeeeEEEEECCEEEEEEeCCC---CCCCCcEEE-EEECCCCCCcee
Q 011114 331 SELHIGPLTSDYLDVSNVVRRILV-------GQHREAPALFKHLGTYYMVTSGCT---GWAPNEALV-HAAESIMGPWED 399 (493)
Q Consensus 331 ~~i~iaeLs~D~~~~~g~~~~i~~-------g~~~EgP~i~K~~G~YYL~yS~~t---g~~~n~~v~-~~Sdsp~GPwt~ 399 (493)
.+++|++|++++++++..+.. +..+|||+|+|++|+||||||... +-..+|.+. ++|++|+|||+.
T Consensus 152 ---~i~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~EgP~i~k~~G~YYL~yS~~~~~~~~~~~y~v~va~S~s~~GPy~~ 228 (269)
T cd08986 152 ---LIARLKDDLSGLAGDPVRIDPSPTFYKDEIGHEGAFVFKYGGKYYLFGTAWSTDKGRKGSYDLYYAVADKITGPYGA 228 (269)
T ss_pred ---ceEeccCccccccCCcEEEecccccccCCccccccEEEEECCEEEEEEeecCCCCCCCCceEEEEEEcCCCCCCccc
Confidence 478999999988888766643 247899999999999999998531 223456654 579999999999
Q ss_pred CCCccccCCccceeeccCCCceEEEc-ccCCcccEEEEE
Q 011114 400 MGNPCIGGNKVFRLTTFFAQSTYVIP-LAGLPGLYIFMA 437 (493)
Q Consensus 400 ~g~Pv~~~~~~~~~~t~gsq~~~V~~-~~G~~~~yi~y~ 437 (493)
...++.+ .| |+.+++ .+| +||++||
T Consensus 229 ~~~~~~g---------~G--h~~~v~~~~G--~~~~~~h 254 (269)
T cd08986 229 RYFAGRF---------LG--HNTPFQDLDG--RWWCTAF 254 (269)
T ss_pred cCccccc---------cC--CCceEECCCC--CEEEEEE
Confidence 8665421 22 233444 444 5777775
No 16
>cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F. This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Ma
Probab=100.00 E-value=3.2e-35 Score=289.45 Aligned_cols=255 Identities=28% Similarity=0.383 Sum_probs=189.0
Q ss_pred eCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccC--CCcccccccCCCCeeee
Q 011114 178 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAA--EETNETHDLYKLNVLER 255 (493)
Q Consensus 178 hgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~--~~~~~~~~~~~~~~iWA 255 (493)
|||+|++.+ |+||||+|.... ...++.+++|+||++|+..+.++.. .... ......+||
T Consensus 1 ~DP~v~~~~--~~yyl~~t~~~~-------------~~~~i~i~~S~Dl~~W~~~~~~~~~~~~~~~----~~~~~~~wa 61 (271)
T cd08978 1 ADPYILRYN--GKYYLYGSTDDA-------------AGPGVQVWSSKDLVNWRYEGAVFVAWRGRGE----AKDSGGLWA 61 (271)
T ss_pred CCCcEEEEC--CEEEEEEecCCc-------------CCCcEEEEECCccCCcEECCcccccccccCC----cccCCceeC
Confidence 578899864 799999997531 1357999999999999999998762 1111 123567999
Q ss_pred ceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecc--cCCCCCCCcCCceEEEcCCCcEEEEEEecC----
Q 011114 256 PKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLY--SKRPHGFDSRDMTIFKDDDGVAYLVYSSED---- 329 (493)
Q Consensus 256 P~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~--~~~p~g~~siDPsvF~DdDGk~YL~~g~~~---- 329 (493)
|+|++ .+|+|||||++...+....+|+||+|++|+|||+... .....+...|||+||+|+||++||+|++..
T Consensus 62 P~v~~--~~g~yyl~y~~~~~~~~~~~i~~a~s~d~~g~~~~~~~~~~~~~~~~~iDp~vf~d~dg~~yl~~~~~~~~~~ 139 (271)
T cd08978 62 PEVIY--YEGKYYLYYSVSDFDYNGSGIGVATSEDPTGPFEDKVIRPPTSNNGNSIDPTVFKDDDGKYYLYYGSGDPGAG 139 (271)
T ss_pred CeEEE--ECCEEEEEEEcccCCCCcccEEEEECCCCCCCccccccCcCccCCCCccCcceEEcCCCCEEEEEecccCCCC
Confidence 99998 6799999999975444568899999999999999642 122334678999999999999999999864
Q ss_pred CCceEEEEcCCCCCCccccEEE----eecCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEE-EEECCCCCCceeCCCc-
Q 011114 330 NSELHIGPLTSDYLDVSNVVRR----ILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALV-HAAESIMGPWEDMGNP- 403 (493)
Q Consensus 330 n~~i~iaeLs~D~~~~~g~~~~----i~~g~~~EgP~i~K~~G~YYL~yS~~tg~~~n~~v~-~~Sdsp~GPwt~~g~P- 403 (493)
++.|.+++|++|++.+.++... .......|||.|+|++|+|||+||.+..+...|.+. ++|++++|||+..+.+
T Consensus 140 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~EgP~~~k~~g~yyl~ys~~~~~~~~y~~~~~~s~~~~Gp~~~~~~~~ 219 (271)
T cd08978 140 FGGIYISELTDDLTKPTGPPVLSASSGNNNAVTEGPTIFKKNGYYYLTYSANGTGDYGYNIGYATSDSIDGPYVKKGGNA 219 (271)
T ss_pred CCcEEEEEECcccccccCCceeeeeeccCCCceEccEEEEECCEEEEEEEeCCCCCCCceEEEEECCCCCCCcCcCCCCc
Confidence 4679999999999887766532 123458999999999999999999754434456665 4799999999998543
Q ss_pred --cccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCeeEEEEEEE
Q 011114 404 --CIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPLIV 457 (493)
Q Consensus 404 --v~~~~~~~~~~t~gsq~~~V~~~~G~~~~yi~y~d~w~~~~~~~sR~v~lPl~~ 457 (493)
+..... ....+.+|+.|++.++ .++|++||.+-.......++.+++||.|
T Consensus 220 ~~~~~~~~---~~~~~~gh~~~~~~~~-g~~~~~yh~~~~~~~~~~r~~~~~~~~~ 271 (271)
T cd08978 220 GLESDSAG---FVGVGLGHGSVVRDKN-GEWYLVYHAYNANSDNPNRKLVINPLVW 271 (271)
T ss_pred ceEeccCC---CccccCCCceEEECCC-CCEEEEEEeecCCCCCCCceEEEEeccC
Confidence 222111 3456777778887763 2788888754433234455668888864
No 17
>cd08982 GH43_3 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=100.00 E-value=2.1e-35 Score=299.36 Aligned_cols=232 Identities=16% Similarity=0.122 Sum_probs=171.5
Q ss_pred eCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeece
Q 011114 178 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPK 257 (493)
Q Consensus 178 hgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~ 257 (493)
+||.|++. +|+||+|+|... .|++|+||+||+.++.++. ...+|||+
T Consensus 4 ~DP~i~~~--~g~YY~~~T~~~-------------------~i~~S~DL~~W~~~g~~~~------------~~~~WAP~ 50 (295)
T cd08982 4 ADPVVILF--KGEYYLFASMSG-------------------GYWHSSDLIDWDFIPTNSL------------PDEGYAPA 50 (295)
T ss_pred CCCeEEEE--CCEEEEEEeCCC-------------------CeEECCCcCCceECCcccC------------CCCcCcCE
Confidence 67888886 499999998621 2799999999999998753 24589999
Q ss_pred EEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCC-ceecccCCCCCCCcCCceEEEcCCCcEEEEEEecCCCceEEE
Q 011114 258 VIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGP-FDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIG 336 (493)
Q Consensus 258 Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GP-f~~~~~~~p~g~~siDPsvF~DdDGk~YL~~g~~~n~~i~ia 336 (493)
|++ .+|+||++++.. .++||+|++|+|| |+.. .......+|||++|+|+||+.||+|++..++.|+++
T Consensus 51 i~~--~~g~~Y~~~~~~-------~~~v~~s~~p~gp~w~~~--~~~~~~~~IDp~vf~DdDGk~Yl~~g~~~~~~i~~~ 119 (295)
T cd08982 51 VFV--YDGTLYYTASTY-------NSRIYKTADPLSGPWEEV--DKSFPPGLADPALFIDDDGRLYLYYGCSNNYPLRGV 119 (295)
T ss_pred EEE--ECCEEEEEEeCC-------CceEEEeCCCCCCCcccc--ccccCCCccCCceEECCCCCEEEEEecCCCCCeEEE
Confidence 998 789988776642 2568999999976 6543 122345689999999999999999987545679999
Q ss_pred EcCCCCCCccccEEEeec--------------------CceeeeeEEEEECCEEEEEEeCCCCCCCCcEEE-EEECCCCC
Q 011114 337 PLTSDYLDVSNVVRRILV--------------------GQHREAPALFKHLGTYYMVTSGCTGWAPNEALV-HAAESIMG 395 (493)
Q Consensus 337 eLs~D~~~~~g~~~~i~~--------------------g~~~EgP~i~K~~G~YYL~yS~~tg~~~n~~v~-~~Sdsp~G 395 (493)
||++|+.++.|+...+.. ..+.|||+|+|++|+|||+||.+..+...|.+. ++|++|+|
T Consensus 120 eL~~d~~~~~g~~~~l~~~~~~~~~We~~g~~~~~~~~~~~~EGP~i~k~~G~YYL~yS~~~~~~~~Y~v~~a~s~~p~G 199 (295)
T cd08982 120 EVDPDTFRPIGEPVELIPGNPDKHGWERFGENNDNPDKTPWMEGAWMTKHNGKYYLQYAAPGTEFNTYADGVYVSDSPLG 199 (295)
T ss_pred EECcccCCccCcceEEEeCCCCCcCeEecCcccccccCCccccccEEEEECCEEEEEEeCCCcccCcEeEEEEEeCCCCC
Confidence 999999888787665431 237899999999999999999754445567765 57999999
Q ss_pred CceeC-CCccccCCccceeeccCCCceEEEc-ccCCcccEEEEEeEeCCCCCCCCee-EEEEEEEcC
Q 011114 396 PWEDM-GNPCIGGNKVFRLTTFFAQSTYVIP-LAGLPGLYIFMADRWNPADLRESRY-IWLPLIVRG 459 (493)
Q Consensus 396 Pwt~~-g~Pv~~~~~~~~~~t~gsq~~~V~~-~~G~~~~yi~y~d~w~~~~~~~sR~-v~lPl~~~~ 459 (493)
||+.. ++|++.... ....+.+|+++++ .+| +||++|| ++...+....|. .++||.|++
T Consensus 200 P~~~~~~~pil~~~~---~~~~g~GH~s~v~~~~G--~~~~~yh-~~~~~~~~~~R~~~i~pv~~~~ 260 (295)
T cd08982 200 PFTYQPHNPFSYKPG---GFITGAGHGSTFQDKYG--NYWHVGT-MTVSVKHGFERRIGLFPAFFDE 260 (295)
T ss_pred CCCcCCCCccccCCC---CeEecCCcccEEECCCC--CEEEEEE-EECCCCCCCCceeEEEEEEECC
Confidence 99987 678875321 1123344444554 555 6787776 565533333454 668999976
No 18
>cd08980 GH43_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=100.00 E-value=7.6e-33 Score=278.51 Aligned_cols=253 Identities=17% Similarity=0.227 Sum_probs=180.7
Q ss_pred CCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceE
Q 011114 179 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKV 258 (493)
Q Consensus 179 gg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~V 258 (493)
||+|++++ ++||+++|... +++.+++|+||++|+..+.++......+ .+..+.+|||+|
T Consensus 2 DP~v~~~~--d~yY~~~T~~~----------------~~~~i~~S~dl~~w~~~~~~~~~~~~~~---~~~~~~~WAP~i 60 (288)
T cd08980 2 DPWVIRHD--GYYYFTATTGE----------------DRIELRRSDTLAGLATAESKVVWTPPDS---GPYSGNLWAPEL 60 (288)
T ss_pred CCeEEEEC--CEEEEEEEeCC----------------CcEEEEecCChhHhhcCCcEEEecCCCC---CCccccEECceE
Confidence 67889875 69999998531 5699999999999998764432211111 123567999999
Q ss_pred EEEccCCEEEEEEEEeCC-CCCcceEEEEEeCC---CCCCceecccCC-CCCCCcCCceEEEcCCCcEEEEEEecCC---
Q 011114 259 IYNDRTGKYVMWMHIDDC-NYTKAAVGVAISDY---PTGPFDYLYSKR-PHGFDSRDMTIFKDDDGVAYLVYSSEDN--- 330 (493)
Q Consensus 259 iyn~~~GkYylyfs~~~~-~~~~~~IGVA~Sds---P~GPf~~~~~~~-p~g~~siDPsvF~DdDGk~YL~~g~~~n--- 330 (493)
++ .+|+|||||++... ....++|+||+|++ |+|||++.+... ..+..+|||++|+| ||+.||+|+++..
T Consensus 61 ~~--~~g~yylyys~~~~~~~~~~~~~v~~a~~~~~~~Gpw~~~~~~~~~~~~~~iDp~~~~d-dG~~Yl~~~~~~~~~~ 137 (288)
T cd08980 61 HY--IDGKWYIYFAAGDGGGNANHRMYVLENAGADPPTGPWTFKGRLADPTDRWAIDGTVFEH-NGQLYFVWSGWEGRTN 137 (288)
T ss_pred EE--ECCEEEEEEEccCCCCCcceeEEEEEeCCCCCCCCCceEeeEeccCCCCeeeeeEEEEE-CCEEEEEEEccCCCCC
Confidence 97 78999999998754 23467899999986 899999875432 23467899999997 5999999997642
Q ss_pred --CceEEEEcCCCCCCccccEEEeecC---------ceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEE-EECC---CCC
Q 011114 331 --SELHIGPLTSDYLDVSNVVRRILVG---------QHREAPALFKHLGTYYMVTSGCTGWAPNEALVH-AAES---IMG 395 (493)
Q Consensus 331 --~~i~iaeLs~D~~~~~g~~~~i~~g---------~~~EgP~i~K~~G~YYL~yS~~tg~~~n~~v~~-~Sds---p~G 395 (493)
..|++++|++++. +.|+...+... ...|||+|+|++|+|||+||.......+|.+.+ ++++ |+|
T Consensus 138 ~~~~i~~~~l~~~~~-~~g~~~~i~~p~~~we~~~~~~~EgP~~~k~~G~yYl~yS~~~~~~~~Y~v~~a~~~~~~~~~~ 216 (288)
T cd08980 138 GNQNLYIAKMSNPWT-LTGPRVLISRPEYDWERQGPGVNEGPAALKRNGKVFLTYSASGSWTPDYCLGLLTADGGADLLD 216 (288)
T ss_pred CCccEEEEECCCCCc-cCCcceEecCCCCCceecCceeeECcEEEEECCEEEEEEECCCCCCCCCEEEEEEEcCCCCCCC
Confidence 5799999998764 44666555432 468999999999999999997654456777754 5553 577
Q ss_pred C--ceeCCCccccCCccceeeccCCCceEEEcc-cCCcccEEEEEeEeCCCCCCCCeeE-EEEEEEcC
Q 011114 396 P--WEDMGNPCIGGNKVFRLTTFFAQSTYVIPL-AGLPGLYIFMADRWNPADLRESRYI-WLPLIVRG 459 (493)
Q Consensus 396 P--wt~~g~Pv~~~~~~~~~~t~gsq~~~V~~~-~G~~~~yi~y~d~w~~~~~~~sR~v-~lPl~~~~ 459 (493)
| |++.++|++..+.. ..-.+.+|+.|++. +| +++|++||.+-........|.+ ..||.|++
T Consensus 217 ~~~~~~~~~pil~~~~~--~~~~g~GH~~iv~~~~G-~~~~~~yH~~~~~~~~~~~R~~~i~~v~~~~ 281 (288)
T cd08980 217 PASWTKSPTPVFQSSPE--NGVYGPGHNSFTKSPDG-TEDWIVYHARPYPNGCGGNRHTRAQKVTWDA 281 (288)
T ss_pred hhhCcCCCCCceecCCC--CccCcCCccceEECCCC-CEEEEEEccccCCCCCCCCceEEEEEEEECC
Confidence 6 77778888765431 12334455566654 44 2388888865443323445665 57999975
No 19
>cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68. Members of the glycosyl hydrolase families 32, 43, 62 and 68 (GH32, GH43, GH62, GH68) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases, beta-xylanases, alpha-L-arabinases, and alpha-L-arabinofuranosidases, using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32
Probab=99.97 E-value=6.9e-29 Score=245.27 Aligned_cols=239 Identities=20% Similarity=0.226 Sum_probs=166.1
Q ss_pred eCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccC--CCcccccccCCCCeeee
Q 011114 178 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAA--EETNETHDLYKLNVLER 255 (493)
Q Consensus 178 hgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~--~~~~~~~~~~~~~~iWA 255 (493)
+||+|++.+ |+||||+|..... ...+|.+++|+||++|+.++.++.. .... ......+||
T Consensus 1 ~DP~i~~~~--g~yyl~~~~~~~~------------~~~~~~~~~S~Dl~~W~~~~~~~~~~~~~~~----~~~~~~~wa 62 (286)
T cd08772 1 ADPNLIKYN--GTYYIFFSGDDKN------------GNPGIAHATSKDLVNWTDHPVALVWWARRGG----PKDSGGIWA 62 (286)
T ss_pred CCCeEEEEC--CEEEEEEEccCCC------------CCceEEEEECCCcCcceECCccchhhcccCC----CCCCCcEec
Confidence 467888764 9999999975311 2467999999999999999988751 1111 123567999
Q ss_pred ceEEEEccC-CEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccC--------CCCCCCcCCceEEEcCCCcEEEEEE
Q 011114 256 PKVIYNDRT-GKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSK--------RPHGFDSRDMTIFKDDDGVAYLVYS 326 (493)
Q Consensus 256 P~Viyn~~~-GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~--------~p~g~~siDPsvF~DdDGk~YL~~g 326 (493)
|+|++ .+ |+|||||++.......++|++|+|+++.++|+..... .......|||+||+|+||++||+|+
T Consensus 63 p~v~~--~~~g~~~l~yt~~~~~~~~~~i~~a~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~~y~~~~ 140 (286)
T cd08772 63 PSIVY--IENGKFYLYYTDVSFTKNQQTIGVATAEDGNGPWTDYIGGPVLPDNPPAADVSNFRDPFVFEDDDGKWYLVFG 140 (286)
T ss_pred ceEEE--cCCCCEEEEEEeecCCCCceeEEEEEcCCCCCCCccccccccccCCCCccccccccCCeEEEcCCCCEEEEEc
Confidence 99998 45 9999999987543356899999999999999965321 1123578999999998899999999
Q ss_pred ecC---CCceEEEEcCCCCCCccccEE-Ee---ecCceeeeeEEEEECCEEEEEEeCCCCC--CCCcEEE-EEECCCCCC
Q 011114 327 SED---NSELHIGPLTSDYLDVSNVVR-RI---LVGQHREAPALFKHLGTYYMVTSGCTGW--APNEALV-HAAESIMGP 396 (493)
Q Consensus 327 ~~~---n~~i~iaeLs~D~~~~~g~~~-~i---~~g~~~EgP~i~K~~G~YYL~yS~~tg~--~~n~~v~-~~Sdsp~GP 396 (493)
+.. .+.|.++++++++........ .+ ......|||.|+|++|+|||+||...+. ...|.++ ++|++++||
T Consensus 141 ~~~~~~~~~i~~~~s~d~~~w~~~~~~~~~~~~~~~~~~E~P~~~~~~g~~yL~~s~~~~~~~~~~y~~~~~~~~~~~g~ 220 (286)
T cd08772 141 SGDHHNFGGIFLYESDDDTTWKKGSAELLISEGEGGKQIEGPGLLKKNGKYYLFYSINGTGRVDSTYSIGYARSESDTGP 220 (286)
T ss_pred cccCCCCCeEEEEEcCCCCCcccccceeeEeeccCCCceeccEEEEECCEEEEEEEcCCCcCCCCCcceEEEEccCCCCC
Confidence 763 457999998777653333322 11 1346899999999999999999965432 3346665 469999999
Q ss_pred ceeCC-Cccc--cCCccceeeccCCCceEEEcccCCcccEEEEEeE
Q 011114 397 WEDMG-NPCI--GGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADR 439 (493)
Q Consensus 397 wt~~g-~Pv~--~~~~~~~~~t~gsq~~~V~~~~G~~~~yi~y~d~ 439 (493)
|+... ++.. ..... ....+..|+.++..++ .++|+++|-+
T Consensus 221 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-g~~~~~~~~~ 263 (286)
T cd08772 221 YVPKSDTSGGLSLTGGN--DGGVGPYHAAAFNDAG-GRVVLVYHAY 263 (286)
T ss_pred cccCCCCCCcccccccc--CCCCCCCccEEEECCC-CCEEEEEEec
Confidence 99873 3211 10010 1223344445554332 2678877743
No 20
>cd08984 GH43_5 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.97 E-value=1.2e-28 Score=249.32 Aligned_cols=257 Identities=18% Similarity=0.157 Sum_probs=179.4
Q ss_pred eeCCceEEECCCCEEEEEEEecCCC-ccc-cccccccccccCcEEEEEeCC-CCCCEEeceeccCCCcccccccCCCCee
Q 011114 177 AHGGGILYDERSRTYFWYGEYKDGP-TYH-AHKKAAARVDIIGVGCYSSKD-MWTWKNEGIVLAAEETNETHDLYKLNVL 253 (493)
Q Consensus 177 ahgg~Ii~~~~~g~YY~ygT~~~~~-~~~-~~~~g~~~~~~~gi~v~sS~D-LvnWt~~G~vL~~~~~~~~~~~~~~~~i 253 (493)
++||.|++++++++||||.|..... ... ..| .....|.+++|+| |++|+.++.++... ..| ....+
T Consensus 11 ~~DP~i~~~~~~~~~~~~yT~~~~~~~~~~~~w-----~~~~~i~~a~S~D~l~~W~~~g~~~~~~-~~~-----~~~~~ 79 (294)
T cd08984 11 AADPTIIYNRETKEWWMFYTNRRANVPTPGVAW-----VHGTDIGVASSKDGGATWTYRGTADGLE-FEC-----GRNTF 79 (294)
T ss_pred CCCCEEEEeCCCCEEEEEEccccCcCCCCCccc-----CcCceEEEEEeCCCCCCCEEeeeeccCC-CCC-----cccce
Confidence 3678999988889999999964321 000 112 2235799999999 99999999876542 222 34569
Q ss_pred eeceEEEEccCCEEEEEEEEeCCC----CCcceEEEEEeCCCCCCceecccCCCCCCCcCCceEEEcCCCcEEEEEEecC
Q 011114 254 ERPKVIYNDRTGKYVMWMHIDDCN----YTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSED 329 (493)
Q Consensus 254 WAP~Viyn~~~GkYylyfs~~~~~----~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~siDPsvF~DdDGk~YL~~g~~~ 329 (493)
|||+|++ .+|+|||||++.... ....+|++|+|++. ++|+..+.....+...|||+||+++||++||+|++..
T Consensus 80 WAP~v~~--~~G~y~myys~~~~~~~~~~~~~~i~~a~S~Dl-~~w~~~~~~~~~~~~~iD~~vf~~~dg~~yl~y~~~~ 156 (294)
T cd08984 80 WAPEVVW--HGGVYHMYVTYIPGVPPDWGGPRRIVHYTSPNL-WDWTFVGRVDLDSDRVIDACVFKLPDGRWRMWYKDER 156 (294)
T ss_pred eCceEEE--ECCEEEEEEEecCCCCcccCCCcEEEEEECCCc-CcceECCccccCCCCcEEeEEEEeCCCEEEEEEECCC
Confidence 9999998 789999999986432 13578999999995 7899765432234568999999988899999998654
Q ss_pred CCceEEEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEECCCCCCceeCCCccccCCc
Q 011114 330 NSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMGNPCIGGNK 409 (493)
Q Consensus 330 n~~i~iaeLs~D~~~~~g~~~~i~~g~~~EgP~i~K~~G~YYL~yS~~tg~~~n~~v~~~Sdsp~GPwt~~g~Pv~~~~~ 409 (493)
++......+++|+.+++.....+ .....|||.|||++|+|||+++... ...+++|+++. ||++.+.++.....
T Consensus 157 ~~~~~~~a~s~D~~~w~~~~~~i-~~~~~EgP~v~k~~g~yym~~~~~~-----g~~~~~S~D~~-~W~~~~~~l~~~~~ 229 (294)
T cd08984 157 RGSTTYAADSEDLYHWTVEGPVL-GDRPHEGPNVFRWKGYYWMIIDEWK-----GLGVYRSKDAE-NWERQGGILLKPGT 229 (294)
T ss_pred CCeEEEEEECCCCCEEEeCCccc-cCCCCCCCCeeEECCEEEEEEcCCc-----eEEEEECCChh-hcEECCeeeccCCC
Confidence 33323455788888876543222 2346799999999999999986421 23456899998 99999877764211
Q ss_pred cceeeccCCCceEEEcccCCcccEEEEEeEeCCCCC----------CCCeeEE-EEEEE
Q 011114 410 VFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADL----------RESRYIW-LPLIV 457 (493)
Q Consensus 410 ~~~~~t~gsq~~~V~~~~G~~~~yi~y~d~w~~~~~----------~~sR~v~-lPl~~ 457 (493)
.. ......+|..|++.+| +|||+||.+-.++.. ..+|+|+ ..|.+
T Consensus 230 ~~-~~~~~~~H~~i~~~~~--~~y~~Yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 285 (294)
T cd08984 230 RP-DDGAKGRHADVVVTGD--RAYIFYFTHPGREYEAEDDAADPYRYRRSSIQVAELEV 285 (294)
T ss_pred Cc-cccccccCCcEEEeCC--EEEEEEEecCCCcccccccccCchhheeeeEEEEEEEE
Confidence 00 1122236667887776 799999987665322 2344677 45777
No 21
>COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.2e-26 Score=245.81 Aligned_cols=209 Identities=21% Similarity=0.286 Sum_probs=158.6
Q ss_pred eCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCccccccc-CCCCeeeec
Q 011114 178 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDL-YKLNVLERP 256 (493)
Q Consensus 178 hgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~-~~~~~iWAP 256 (493)
.|++|+++ +..|||-.+. +..++|+.++.|+||+||+.....|.......+... ..++.+|||
T Consensus 31 PDpSi~rv--g~dyYia~st--------------F~~fpGl~i~hS~DL~nW~~v~tpl~~~~~ld~kgn~~~S~giWAP 94 (549)
T COG3507 31 PDPSIVRV--GDDYYIATST--------------FEWFPGLAIHHSRDLVNWTLVSTPLIRTSQLDLKGNFPYSGGIWAP 94 (549)
T ss_pred CCCceEec--CCceEEEcce--------------EEEcCceeeeccccccCcEEecccccCcchhhhhcccCCCCceecc
Confidence 46677774 3667775442 134788999999999999999988877665444333 357889999
Q ss_pred eEEEEccCCEEEEEEEE-e--CCCCCcceEEEEEeCCCCCCceecccCCCCCCCcCCceEEEcCCCcEEEEEEecCCC--
Q 011114 257 KVIYNDRTGKYVMWMHI-D--DCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNS-- 331 (493)
Q Consensus 257 ~Viyn~~~GkYylyfs~-~--~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~siDPsvF~DdDGk~YL~~g~~~n~-- 331 (493)
+|.| .+|||||||+- . ++.+......+.++++++|||++... ..+..+|||++|.|+||+.||++++|..+
T Consensus 95 dl~y--~dGkfwl~ytdvk~~~g~~k~~~nyl~t~~s~~G~WsDpi~--l~~~~~iDPslf~D~dGr~wlv~~~w~~~~~ 170 (549)
T COG3507 95 DLSY--HDGKFWLYYTDVKRSGGPYKNAGNYLVTAESIDGPWSDPIK--LNGSNAIDPSLFFDKDGRKWLVNGSWDGGIF 170 (549)
T ss_pred ceec--CCCcEEEEEecccccCCcccccccEEEEecCCCCCccccee--cCCcCccCCceeecCCCCEEEEecccCCCcc
Confidence 9998 99999999943 2 22345677888999999999998642 22345899999999999999999998644
Q ss_pred -----ceEEEEcCCCCCCcccc-EEEeecC---ceeeeeEEEEECCEEEEEEeCCC-CCCCCcEEEEEECCCCCCceeC-
Q 011114 332 -----ELHIGPLTSDYLDVSNV-VRRILVG---QHREAPALFKHLGTYYMVTSGCT-GWAPNEALVHAAESIMGPWEDM- 400 (493)
Q Consensus 332 -----~i~iaeLs~D~~~~~g~-~~~i~~g---~~~EgP~i~K~~G~YYL~yS~~t-g~~~n~~v~~~Sdsp~GPwt~~- 400 (493)
.+.+.+.++....+.|. .+.++.+ ...|||+++|++|+|||+.+.+. .-.....+++||++|.|||+..
T Consensus 171 ~~~~~~i~l~~~~~~~~~l~g~~~~~~~~G~~~~~~EGPhl~k~~gYYYL~~a~gG~t~~gh~~~vaRSKsidGPYe~~~ 250 (549)
T COG3507 171 MHSFAGIILQEYDKTTQKLVGQGYKIIFDGGNGGLTEGPHLYKKTGYYYLYVAEGGLTTYGHAIRVARSKSIDGPYEDHP 250 (549)
T ss_pred cccccceeeeeccccccccCCccceeEeccCCCccccCceeeccCCEEEEEEEcCCCCccceeEEEEeccCCCCCcccCC
Confidence 57777777777777777 5555543 47999999999999999998533 1112234557899999999988
Q ss_pred CCcccc
Q 011114 401 GNPCIG 406 (493)
Q Consensus 401 g~Pv~~ 406 (493)
++|++.
T Consensus 251 ~~pllt 256 (549)
T COG3507 251 GNPLLT 256 (549)
T ss_pred CCeeee
Confidence 899985
No 22
>cd08983 GH43_4 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.93 E-value=1.2e-24 Score=218.77 Aligned_cols=218 Identities=14% Similarity=0.171 Sum_probs=152.0
Q ss_pred eeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeec
Q 011114 177 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERP 256 (493)
Q Consensus 177 ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP 256 (493)
.+||.|++.+++|+|||++|+..... +.....+|.+|+|+||++|+..+.++.... ...++|||
T Consensus 18 ~rDP~I~r~~~~g~yy~~~T~~~~~~--------~~~~~~~i~i~~S~DLv~W~~~~~~~~~~~--------~~~~~WAP 81 (276)
T cd08983 18 LRDPFILRSHEGGKYYMIATDLKITG--------QTNGSQYIVVWESTDLVNWTFQRLVKVNPP--------NAGNTWAP 81 (276)
T ss_pred ccCCeEEEcCCCCEEEEEEEecCcCC--------cccCCCeEEEEECCcccCCcccceeecCCC--------CcCcEeCc
Confidence 47899999856799999999864210 012356899999999999999998863221 23568999
Q ss_pred eEEEEccCCEEEEEEEEeCCC----CCcceEEEEEeCCCCCCceecccCCCCCCCcCCceEEEcCCCcEEEEEEecCCCc
Q 011114 257 KVIYNDRTGKYVMWMHIDDCN----YTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSE 332 (493)
Q Consensus 257 ~Viyn~~~GkYylyfs~~~~~----~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~siDPsvF~DdDGk~YL~~g~~~n~~ 332 (493)
+|+|++.+|+|||||++...+ .....|+++++.++ ..|+........+...||+++|+|+ |++||+|+.+.+..
T Consensus 82 ev~~d~~~g~y~~~~s~~~~~~~~~~~~~~i~~~tt~Df-~tft~p~~~~~~~~~~ID~~v~~~~-g~~Yl~~k~~~~~~ 159 (276)
T cd08983 82 EAFWDAERGQYVVYWSSRLYDNTGGFYNYRLYATTTSDF-VTFTEPKVWIDLGANVIDTTVVKVG-GTYYRFYKNEGSKD 159 (276)
T ss_pred cceEcCCCCeEEEEEecccCCCCCCCccEEEEEEecCcc-cccCCCeEeecCCCCeEeeEEEEeC-CEEEEEEecCCCCc
Confidence 999988899999999987542 33566777777454 4577544333356789999999975 99999999876567
Q ss_pred eEEEEcCCCCCCccccEEEee-----cCceeeeeEEEEECC--EEEEEEeCCCCCCCCcEEEEEECCC-CCCceeCCCcc
Q 011114 333 LHIGPLTSDYLDVSNVVRRIL-----VGQHREAPALFKHLG--TYYMVTSGCTGWAPNEALVHAAESI-MGPWEDMGNPC 404 (493)
Q Consensus 333 i~iaeLs~D~~~~~g~~~~i~-----~g~~~EgP~i~K~~G--~YYL~yS~~tg~~~n~~v~~~Sdsp-~GPwt~~g~Pv 404 (493)
|++++.+. +.|+...+. .+...|||.|||.++ +|||+++.+. ...|... .++++ .|.|+.....-
T Consensus 160 i~~~~s~~----l~g~~~~~~~~~~~~~~~~EgP~v~k~~~~~~y~L~~d~y~--~~~Y~~~-~t~d~~~~~~~~~~~~~ 232 (276)
T cd08983 160 IELARSKS----LTGPWTIVGTGDAGWGGAVEGPTVFKLNNGGGWYLYGDNYS--GGGYYPF-DTSDLASTSWTKVALYG 232 (276)
T ss_pred EEEEEeCC----CCCCceEecccccCCCCceeCCeEEEECCCCEEEEEEEECC--CCCeEEE-EecCcCCCceecccccC
Confidence 88877543 345544332 235799999999987 9999999765 2233332 34444 56677432211
Q ss_pred ccCCccceeeccCCCceEEEcccC
Q 011114 405 IGGNKVFRLTTFFAQSTYVIPLAG 428 (493)
Q Consensus 405 ~~~~~~~~~~t~gsq~~~V~~~~G 428 (493)
...+..|+.|+++.-
T Consensus 233 ---------~~~~~rHg~v~~it~ 247 (276)
T cd08983 233 ---------LPGNPRHGTVVPITA 247 (276)
T ss_pred ---------CCCCCCcceEecCCH
Confidence 223456778998864
No 23
>cd08987 GH62 Glycosyl hydrolase family 62, characterized arabinofuranosidases. The glycosyl hydrolase family 62 includes eukaryotic and prokaryotic enzymes, most of which are characterized arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. The enzyme does not act on xylose moieties in xylan that are adorned with an arabinose side chain at both O2 and O3 positions, nor does it display any non-specific arabinofuranosidase activity. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. The catalytic mechanism of this family has not yet been determined, but is predicted to display a single displacement or inverting mechanism, based on its location in the same carbohydrate-active enzymes database (CAZY) clan (Clan F) as that occupied by GH43, a well characterized inverting family. Similarly, the catalytic residues are predicted fr
Probab=99.92 E-value=1.1e-23 Score=209.84 Aligned_cols=199 Identities=18% Similarity=0.222 Sum_probs=146.8
Q ss_pred eCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCC-CcccccccCCCCeeeec
Q 011114 178 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAE-ETNETHDLYKLNVLERP 256 (493)
Q Consensus 178 hgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~-~~~~~~~~~~~~~iWAP 256 (493)
-|+.|+.. +|+||+|||..++. ....+++| |++|+.++.|+... .... .....|||
T Consensus 25 kDPtiv~~--nGkYyvYgT~~~~~--------------~~~s~~~S--f~~Ws~~g~A~q~~l~~~~-----~~~~fwAP 81 (303)
T cd08987 25 KDPTVVYY--NGRYHVYATTADAG--------------NYGSMYFN--FTDWSQAASATQYYLQNGN-----MTGYRVAP 81 (303)
T ss_pred cCCeEEEE--CCEEEEEEccCCCC--------------Cceeeeec--ccCHhHhccchhhcccCCC-----CCcccccC
Confidence 45667765 49999999975421 12467888 99999999776311 0000 13459999
Q ss_pred eEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCC-------CCCCCcCCceEEEcCCCcEEEEEEecC
Q 011114 257 KVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR-------PHGFDSRDMTIFKDDDGVAYLVYSSED 329 (493)
Q Consensus 257 ~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~-------p~g~~siDPsvF~DdDGk~YL~~g~~~ 329 (493)
+|+|-+.+++|||+|.+. .+.+++|++|+||+....... ..+...||+.| ++||++.||++.+.
T Consensus 82 qVfyf~pk~kwYL~Yq~~-------~~~yaTs~dp~~P~~ws~~qpl~~~~~~~~~~~~ID~~v-I~Dd~~~YLff~~d- 152 (303)
T cd08987 82 QVFYFAPQNKWYLIYQWW-------PAAYSTNSDISNPNGWSAPQPLFSGTPNGSPGGWIDFWV-ICDDTNCYLFFSDD- 152 (303)
T ss_pred EEeeeccCCEEEEEEecC-------ceEEEeCCCCCCCCccCCCcccccCcccCCCCCccceeE-EeCCCCEEEEEecC-
Confidence 999877889999999972 267999999999988432211 11245799999 68899999999865
Q ss_pred CCceEEEEcCCC-CCCccccEEEeec----CceeeeeEEEEECC--EEEEEEeCCCCCCCCcEEEEEECCCCCCceeC--
Q 011114 330 NSELHIGPLTSD-YLDVSNVVRRILV----GQHREAPALFKHLG--TYYMVTSGCTGWAPNEALVHAAESIMGPWEDM-- 400 (493)
Q Consensus 330 n~~i~iaeLs~D-~~~~~g~~~~i~~----g~~~EgP~i~K~~G--~YYL~yS~~tg~~~n~~v~~~Sdsp~GPwt~~-- 400 (493)
|+.|+.++|+.+ .-...++...+.. ...+|||.|+|.+| +|||++++.....+.|.+.++|+||.|||++.
T Consensus 153 nG~iyra~~~~~nFp~~~~~~~~~~~~~~~~~lfEa~~Vykv~G~~~YlmiveA~g~~~~rYfrs~Ts~Sl~GpWt~~a~ 232 (303)
T cd08987 153 NGKLYRSSTTLGNFPNGGTETVIIMSDSNKNNLFEASNVYKVKGQNQYLLIVEAIGSDGGRYFRSWTATSLDGPWTPLAT 232 (303)
T ss_pred CCeEEEEecchhhCCCCCCccEEEecCCCccccceeeEEEEECCCeEEEEEEEecCCCCCCeEEEEEcCCCCCCceeccc
Confidence 578999999876 5444444333332 47899999999998 99999997543345677778999999999998
Q ss_pred --CCccccCC
Q 011114 401 --GNPCIGGN 408 (493)
Q Consensus 401 --g~Pv~~~~ 408 (493)
.||+.+.+
T Consensus 233 ~e~nPfag~~ 242 (303)
T cd08987 233 TESNPFAGAN 242 (303)
T ss_pred ccCCCccccc
Confidence 47888763
No 24
>cd08995 GH32_Aec43_like Glycosyl hydrolase family 32. This glycosyl hydrolase family 32 (GH32) includes characterized as well as uncharacterized proteins. GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH32 family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an a
Probab=99.88 E-value=1.4e-20 Score=188.51 Aligned_cols=202 Identities=18% Similarity=0.167 Sum_probs=139.9
Q ss_pred CceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEE
Q 011114 180 GGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVI 259 (493)
Q Consensus 180 g~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~Vi 259 (493)
+..++. +|+||||.++..... .|. .....|.+++|+||+||+.++.+|.+.+.. .....+|+|+|+
T Consensus 3 ~~~~~~--~G~yhlfyq~~p~~~---~~~----~~~~~wgha~S~Dlv~W~~~~~al~~~~~~-----~d~~g~~sgs~~ 68 (280)
T cd08995 3 PMPFYD--DGTFHIFYLHDPRNG---PPE----GLRHPWSLLTTKDLVNYEDHGEAIPRGGDE-----DDDDAIGTGSVI 68 (280)
T ss_pred ccceEE--CCEEEEEEEcCCCCC---Ccc----cCCceEEEEEccCcCccEECcceecCCCCc-----ccccCceEeEEE
Confidence 344554 489999999765211 110 134569999999999999999998764322 135679999999
Q ss_pred EEccCCEEEEEEEEeCCC-CCcceEEEEEeCCCCCCceeccc--CC--CCC---CCcCCceEEEcC-CCcEEEEEEecC-
Q 011114 260 YNDRTGKYVMWMHIDDCN-YTKAAVGVAISDYPTGPFDYLYS--KR--PHG---FDSRDMTIFKDD-DGVAYLVYSSED- 329 (493)
Q Consensus 260 yn~~~GkYylyfs~~~~~-~~~~~IGVA~SdsP~GPf~~~~~--~~--p~g---~~siDPsvF~Dd-DGk~YL~~g~~~- 329 (493)
. .+|+|||||++.... ...++|++|+|+++ .+|+.... .. +.+ ...+||.||.|+ +|++||++++..
T Consensus 69 ~--~~g~~~l~YTg~~~~~~~~~~i~~A~S~D~-~~w~k~~~~pv~~~~~~~~~~~~rDP~Vf~~~~~g~y~m~~g~~~~ 145 (280)
T cd08995 69 K--GEGTYHAFYTGHNLDGKPKQVVMHATSDDL-ITWTKDPEFILIADGEGYEKNDWRDPFVFWNEEEGCYWMLLATRLL 145 (280)
T ss_pred e--eCCEEEEEEEEECCCCCCcEEEEEEECCCC-CccEECCCCeecCCccccccCCccCCcEEEcCCCCeEEEEEEeccC
Confidence 7 679999999986432 23578999999997 68886532 11 222 357899999985 799999998742
Q ss_pred ----CCceEEEEc-CCCCCCcccc--EEEeecCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEECCCCCCceeC
Q 011114 330 ----NSELHIGPL-TSDYLDVSNV--VRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDM 400 (493)
Q Consensus 330 ----n~~i~iaeL-s~D~~~~~g~--~~~i~~g~~~EgP~i~K~~G~YYL~yS~~tg~~~n~~v~~~Sdsp~GPwt~~ 400 (493)
+....+..+ |+|+.+++-. ......+...|+|.||+.+|+|||+||... ......+++++++.|||+..
T Consensus 146 ~~~~~~~g~i~~~~S~Dl~~W~~~~~~~~~~~~~~~E~P~l~~~~g~~~L~~s~~~--~~~~~~Y~~~~~~~g~~~~~ 221 (280)
T cd08995 146 DGPYNRRGCIALFTSKDLKNWEYEEPFYAPGLYFMPECPDLFKMGDWWYLVYSEFS--ENRKTHYRVSKSPFGPWRAP 221 (280)
T ss_pred CCCCCCCeEEEEEEeCCcCcceecCceecCCCcceeecceEEEECCEEEEEEEecc--CCCcEEEEEeCCCCCCeEcC
Confidence 222333333 6788877532 111112356899999999999999999653 22233445688999999765
No 25
>cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase. Glycosyl hydrolase family 68 (GH68) consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Levansucrase, also known as beta-D-fructofuranosyl transferase, catalyzes the transfer of the sucrose fructosyl moiety to a growing levan chain. Similarly, inulosucrase catalyzes long inulin-type of fructans, and beta-fructofuranosidases create fructooligosaccharides (FOS). However, in the absence of high fructan/sucrose ratio, some GH68 enzymes can also use fructan as donor substrate. GH68 retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic n
Probab=99.87 E-value=1.5e-20 Score=194.01 Aligned_cols=217 Identities=20% Similarity=0.245 Sum_probs=148.9
Q ss_pred cccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC-----CCCcceEEEEE
Q 011114 213 VDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC-----NYTKAAVGVAI 287 (493)
Q Consensus 213 ~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~-----~~~~~~IGVA~ 287 (493)
.....|.++.|+||++|++.+.+++... .+...+|+++++. ..+|+++|||++... ....++|++|+
T Consensus 38 h~~~~wgh~~S~dlv~W~~~~~l~p~~~-------~d~~g~wSGsa~~-~~dg~~~lfYTg~~~~~~~~~~~~Q~ia~a~ 109 (349)
T cd08997 38 HGDARIGYFYSRAGGNWIDGGKVFPDGL-------SPGSREWSGSATL-DDDGTVQLFYTAVGRKGEPQPTFTQRLALAR 109 (349)
T ss_pred cCceEEEEEEeCCCCcccCCCccCCCCc-------ccCCCeEcceEEE-eCCCeEEEEEeccccCCCCCCCceEEEEEEE
Confidence 3456799999999999999888776432 2467899999997 346999999998632 12357788887
Q ss_pred eCCC----------------CCCceeccc------CCCCCCCcCCceEEEcC-CCcEEEEEEecCC--------------
Q 011114 288 SDYP----------------TGPFDYLYS------KRPHGFDSRDMTIFKDD-DGVAYLVYSSEDN-------------- 330 (493)
Q Consensus 288 SdsP----------------~GPf~~~~~------~~p~g~~siDPsvF~Dd-DGk~YL~~g~~~n-------------- 330 (493)
++.. .|++-.... ........|||.||+|+ +|+.||++.+...
T Consensus 110 ~~~~~v~~~~~~~~~~lf~~Dg~~Yqt~~q~~~~~~~~~~~~fRDP~vf~d~~~G~~ymvfeant~~~~g~~~~~~~~~~ 189 (349)
T cd08997 110 GTLSVVNLSGFEDHHELFEPDGDLYQTDQQYEGTGAQGDIKAFRDPFVFEDPETGKTYLLFEGNTAGERGSQECTEAELG 189 (349)
T ss_pred CCCcceEecccCccceeeeCCCceEEeccccccccccCccCcccCCEEEecCCCCcEEEEEEeccCCCCCcccccccccc
Confidence 7652 122111000 00113578999999997 8999999998531
Q ss_pred ----------------CceEEEEcC-CCCCCcc--ccEE-EeecCceeeeeEEEEECCEEEEEEe-CCCCCCCC-----c
Q 011114 331 ----------------SELHIGPLT-SDYLDVS--NVVR-RILVGQHREAPALFKHLGTYYMVTS-GCTGWAPN-----E 384 (493)
Q Consensus 331 ----------------~~i~iaeLs-~D~~~~~--g~~~-~i~~g~~~EgP~i~K~~G~YYL~yS-~~tg~~~n-----~ 384 (493)
+.|.+++++ +|+.+++ ++.. ........|+|.|||++|+||||+| .++++.++ +
T Consensus 190 ~~~~~~~~~~~a~~~~G~IGia~~~s~dl~~W~~~~PL~~a~~v~d~~E~P~v~~~~gk~yL~~s~~~~~~~~~~~~~~~ 269 (349)
T cd08997 190 RVLPDTVKPDGASYQNGNVGIAVAKNDDLTEWKLLPPLLEANGVNDELERPHVVFHNGKYYLFTISHRSTFAPGLSGPDG 269 (349)
T ss_pred ccccccccccccccccceEEEEEecCCCCCCcEEcCccccCCCcCCceEcceEEEECCEEEEEEeCCcCccccccCCCCc
Confidence 235566664 3454432 2211 0112357999999999999999999 45566653 5
Q ss_pred EEEEEECCCCCCceeC-CCccccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCC
Q 011114 385 ALVHAAESIMGPWEDM-GNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPA 443 (493)
Q Consensus 385 ~v~~~Sdsp~GPwt~~-g~Pv~~~~~~~~~~t~gsq~~~V~~~~G~~~~yi~y~d~w~~~ 443 (493)
..+++|++++|||+.. +.+++.+++. ..++++|+++|++ . ....-|-|.+...
T Consensus 270 ~~g~vsdsl~GP~~~~n~sglvl~~p~--~~~~~~ys~~~~p-~---~lv~Sfid~~~~~ 323 (349)
T cd08997 270 LYGFVSDSLRGPYKPLNGSGLVLGNPT--DAPFQTYSWYVMP-N---GLVTSFIDNVGFA 323 (349)
T ss_pred EEEEEeCCCCCCCccCCCCcceeCCCC--CCccccceEEEEC-C---CEEEEEecccCCc
Confidence 6677899999999997 6666666554 4689999999998 3 3444555666543
No 26
>cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins. This subfamily is glycosyl hydrolase family 43 (GH43)-like and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.85 E-value=1.6e-19 Score=186.18 Aligned_cols=200 Identities=21% Similarity=0.323 Sum_probs=125.9
Q ss_pred EEeeCCc-eEEECCCCEEEEEEEecCCCc--ccccccccccc--ccCcEEEEEeCCCCCCEEeceeccCCCcccccccCC
Q 011114 175 IQAHGGG-ILYDERSRTYFWYGEYKDGPT--YHAHKKAAARV--DIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYK 249 (493)
Q Consensus 175 I~ahgg~-Ii~~~~~g~YY~ygT~~~~~~--~~~~~~g~~~~--~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~ 249 (493)
|...||+ |++. +|+|||+.+...... +..+......+ ....|.+++|+||++|+.++.+|...+.. .++
T Consensus 35 i~r~dP~~Vi~~--~g~Y~mwYs~~~~~~~~~~~~~~~~~~~~w~~y~I~~A~S~Dgv~W~~~g~~L~~~~~g----~Wd 108 (349)
T cd08992 35 VHRRDPSSVIKV--DGLYHVWYTKSEGETDGFGTGDPEAKVFPWDKCEIWHATSKDGWTWKEEGPAIGRGEKG----AYD 108 (349)
T ss_pred eecCCCceEEEE--CCEEEEEEEecCCcccccccCCccccccCCCceEEEEEECCCCCCceECCccccCCCCC----Ccc
Confidence 3344553 6664 489999877532100 00000000000 13457789999999999999888754321 124
Q ss_pred CCeeeeceEEEEccCCEEEEEEEEeCCCC---CcceEEEEEeCCCCCCceecccCCCCCCCcCCceEEEcCCCcEEEEEE
Q 011114 250 LNVLERPKVIYNDRTGKYVMWMHIDDCNY---TKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYS 326 (493)
Q Consensus 250 ~~~iWAP~Viyn~~~GkYylyfs~~~~~~---~~~~IGVA~SdsP~GPf~~~~~~~p~g~~siDPsvF~DdDGk~YL~~g 326 (493)
...+|||+|++ .+|+|||||++....+ ...+||||+|++|.|||+.... |.-...-|...+.|+||
T Consensus 109 ~~~vwaP~Vi~--~dGkyYM~Ysa~~~~~~~~~~~~IGvA~AdSp~GpWtr~d~--Pil~p~~dg~w~~d~~~------- 177 (349)
T cd08992 109 DRSVFTPEVLE--HEGTYYLVYQVVKSPYLNRSFESIAMAVADSPYGPWTKSDE--PILSPSNDGIWKGDEDN------- 177 (349)
T ss_pred ccceECcEEEE--ECCEEEEEEEecccccCCCCcceEEEEEECCcccccccCCC--cEecCCcCCceeeccCc-------
Confidence 67899999996 8899999998643211 2368999999999999986431 11011123334444333
Q ss_pred ecCCCceEEEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCCC-----C-CCCcEEEE-EECCCCCCcee
Q 011114 327 SEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTG-----W-APNEALVH-AAESIMGPWED 399 (493)
Q Consensus 327 ~~~n~~i~iaeLs~D~~~~~g~~~~i~~g~~~EgP~i~K~~G~YYL~yS~~tg-----~-~~n~~v~~-~Sdsp~GPwt~ 399 (493)
..++++..++.+ ..+|+|.|++++|+|||+|++... + ..++.+++ +|+||+|||++
T Consensus 178 ------~~~~~~~g~wD~-----------~~v~~P~v~~~~g~yyL~Y~G~~~g~~~~~~~~~~~iGvAvAdsP~GPf~r 240 (349)
T cd08992 178 ------RFLVKKKGSFDS-----------HKVHDPCLFPFNGKFYLYYKGEQMGEEMTMGGRETKWGVAIADDPEGPYVK 240 (349)
T ss_pred ------eeEeccCCCccc-----------CceECCEEEEECCEEEEEEEccccCcccccCCCCceEEEEEECCCCCCCEe
Confidence 223333333332 246999999999999999987531 1 12455654 69999999998
Q ss_pred C-CCccccCC
Q 011114 400 M-GNPCIGGN 408 (493)
Q Consensus 400 ~-g~Pv~~~~ 408 (493)
. .+||+...
T Consensus 241 ~~~nPi~~~~ 250 (349)
T cd08992 241 SPYNPITNSG 250 (349)
T ss_pred CCCCcccCCC
Confidence 7 68987643
No 27
>cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins. This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, f
Probab=99.83 E-value=2.2e-18 Score=173.47 Aligned_cols=214 Identities=14% Similarity=0.196 Sum_probs=142.9
Q ss_pred EeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCC-CCEEeceeccCCCcccccccCCCCeee
Q 011114 176 QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMW-TWKNEGIVLAAEETNETHDLYKLNVLE 254 (493)
Q Consensus 176 ~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv-nWt~~G~vL~~~~~~~~~~~~~~~~iW 254 (493)
.++++.|++++ +|+||||.|......-..+| .....|.+..|+|+. +|+..+.||.+.... .++...+|
T Consensus 12 ~~w~~~vi~~~-~g~y~lfy~~~~~~~~~~~~-----~~~~~i~~A~S~~~~g~w~~~g~vl~~~~~~----~wd~~~~~ 81 (291)
T cd08994 12 SVWGGSIIKGP-DGKYHLFASRWPEGLGFHGW-----LPYSEIVHAVSDTPEGPYTFQEVVLPGRGGG----YWDARTTH 81 (291)
T ss_pred EEEecceEECC-CCcEEEEEEEccCCCCCCcc-----cccceEEEEEcCCCCCCcEEeeeEcCCCCCC----cccCCCcc
Confidence 35788999876 48999999864311001111 112358899999975 899999999865422 22466799
Q ss_pred eceEEEEccCCEEEEEEEEeCC------CCCcceEEEEEeCCCCCCceec-ccC-CC--C---CCCcCCceEEEcCCCcE
Q 011114 255 RPKVIYNDRTGKYVMWMHIDDC------NYTKAAVGVAISDYPTGPFDYL-YSK-RP--H---GFDSRDMTIFKDDDGVA 321 (493)
Q Consensus 255 AP~Viyn~~~GkYylyfs~~~~------~~~~~~IGVA~SdsP~GPf~~~-~~~-~p--~---g~~siDPsvF~DdDGk~ 321 (493)
+|+|++ .+|+|||||+.... ....++||+|+|++|.|||+.. ... .+ . ....+||+|++++||++
T Consensus 82 ~P~vi~--~~g~yyl~Y~~~~~~~~~~~~~~~~~ig~a~s~~~~g~w~~~~~pvl~~~~~~~~~~~~~~p~v~~~~~g~~ 159 (291)
T cd08994 82 NPTIKR--FDGKYYLYYIGNTDPGPRPGHRNNQRIGVAVSDSLDGPWKRSDQPILEPRPGGWDNLITSNPAVTRRPDGSY 159 (291)
T ss_pred CCeEEE--ECCEEEEEEEcccCCcccccCCCCceEEEEEeCCCCCCcEECCCceecCCCCccccccccCCCeEEeCCCCE
Confidence 999997 67999999998642 2246789999999999999974 221 11 1 13478999999879999
Q ss_pred EEEEEecCC------CceEEEEcCCCC-CCccccEE-Ee---ecCceeeeeEEEEECCEEEEEEeCCCCCC--CCcEEE-
Q 011114 322 YLVYSSEDN------SELHIGPLTSDY-LDVSNVVR-RI---LVGQHREAPALFKHLGTYYMVTSGCTGWA--PNEALV- 387 (493)
Q Consensus 322 YL~~g~~~n------~~i~iaeLs~D~-~~~~g~~~-~i---~~g~~~EgP~i~K~~G~YYL~yS~~tg~~--~n~~v~- 387 (493)
||+|.+... ..+.++. ++|. ..++-... .+ .....+|.|.|+|++|+|||+|+...++. ..+.+.
T Consensus 160 ~m~y~g~~~~~~~~~~~~gla~-s~d~~g~~~~~~~~~v~~~~~~~~~~dP~V~~~~g~yym~~~~~~~~~~~~~~~i~~ 238 (291)
T cd08994 160 LLVYKGGTYNPTKGNRKYGVAI-ADSPTGPYTKVSGPPFIEPGDNGNTEDPFVWYDKGQFHMIVKDMLGYVTGEKGGGAY 238 (291)
T ss_pred EEEEeccccCCCCCcEEEEEEE-eCCCCCCCEECCCCccccCCCCCceeCceEEEeCCEEEEEEeecccCcCCCCceEEE
Confidence 999987521 1234444 3343 23321100 11 12357999999999999999998766541 223443
Q ss_pred EEECCCCCCceeCCCc
Q 011114 388 HAAESIMGPWEDMGNP 403 (493)
Q Consensus 388 ~~Sdsp~GPwt~~g~P 403 (493)
++|++.. .|+..+.+
T Consensus 239 a~S~Dg~-~W~~~~~~ 253 (291)
T cd08994 239 FRSKDGI-HWKLAPGL 253 (291)
T ss_pred EECCCCC-CceecCcc
Confidence 4566543 79988655
No 28
>COG3940 Predicted beta-xylosidase [General function prediction only]
Probab=99.79 E-value=3.3e-17 Score=155.61 Aligned_cols=219 Identities=18% Similarity=0.243 Sum_probs=157.2
Q ss_pred CCeeeeceEEEEccCCEEEEEEEEeCC-----CCCcceEEEEEeCC--C-CCCceecccC-CCCCCCcCCceEEEcCCCc
Q 011114 250 LNVLERPKVIYNDRTGKYVMWMHIDDC-----NYTKAAVGVAISDY--P-TGPFDYLYSK-RPHGFDSRDMTIFKDDDGV 320 (493)
Q Consensus 250 ~~~iWAP~Viyn~~~GkYylyfs~~~~-----~~~~~~IGVA~Sds--P-~GPf~~~~~~-~p~g~~siDPsvF~DdDGk 320 (493)
+..+|||++++ .+|+||+||++... +...+++.|....+ | +|.|...+.. .+-...++|.+.|. ..|+
T Consensus 67 s~liwapeih~--ingkwyiyfaaa~ta~~k~g~f~hrmfvlene~anpltg~w~ekgqikt~wesfsldattfe-h~gk 143 (324)
T COG3940 67 SNLIWAPEIHF--INGKWYIYFAAAPTANIKDGTFNHRMFVLENENANPLTGNWVEKGQIKTAWESFSLDATTFE-HNGK 143 (324)
T ss_pred hhcccccceeE--EcceEEEEEeecCcccccccccceeEEEEecCCCCCCcccceecceeccchhcceeeeeeee-eCCE
Confidence 56799999998 99999999998643 12357777776543 3 6888876543 34456789999996 6899
Q ss_pred EEEEEEec-----CCCceEEEEcCCCCCCccccEEEeec--------C-ceeeeeEEEEECCEEEEEEeCCCCCCCCcEE
Q 011114 321 AYLVYSSE-----DNSELHIGPLTSDYLDVSNVVRRILV--------G-QHREAPALFKHLGTYYMVTSGCTGWAPNEAL 386 (493)
Q Consensus 321 ~YL~~g~~-----~n~~i~iaeLs~D~~~~~g~~~~i~~--------g-~~~EgP~i~K~~G~YYL~yS~~tg~~~n~~v 386 (493)
.|++|... +|++|+|++|...++ +.|++..+.. | -..|||+|+|++|+-++.||.... ..+|++
T Consensus 144 ~yyvwaqkdp~i~gnsniyiaemenpwt-ikgepvmlskpe~dwe~~gfwvnegpav~k~ngkifi~ysasat-d~nycm 221 (324)
T COG3940 144 LYYVWAQKDPNIKGNSNIYIAEMENPWT-IKGEPVMLSKPELDWEIKGFWVNEGPAVLKKNGKIFITYSASAT-DVNYCM 221 (324)
T ss_pred EEEEEeccCCCccCCcceEEEeccCCce-ecCceEEecCCCcccEEEEEEecCCceEEEECCEEEEEEecccc-ccceee
Confidence 99999863 367899999988775 6787766642 1 368999999999999999997543 467887
Q ss_pred EE--E--ECCCCCC--ceeCCCccccCCccceeeccCCCc-eEEEcccCCcccEEEEEeEeCC---CC--CCCCee-EEE
Q 011114 387 VH--A--AESIMGP--WEDMGNPCIGGNKVFRLTTFFAQS-TYVIPLAGLPGLYIFMADRWNP---AD--LRESRY-IWL 453 (493)
Q Consensus 387 ~~--~--Sdsp~GP--wt~~g~Pv~~~~~~~~~~t~gsq~-~~V~~~~G~~~~yi~y~d~w~~---~~--~~~sR~-v~l 453 (493)
+. + -++++-| |++...|++...-. +.-||.+| +|.++.+|+ ...|+||.|--. ++ -.+.|. ...
T Consensus 222 gllwanen~dlldpaswtksptpvf~ts~e--n~qygpghnsftvtedgk-hdvlvyharnyteiegdplydpnrhtrlk 298 (324)
T COG3940 222 GLLWANENSDLLDPASWTKSPTPVFKTSME--NHQYGPGHNSFTVTEDGK-HDVLVYHARNYTEIEGDPLYDPNRHTRLK 298 (324)
T ss_pred eeeeecccCCcCCchhcccCCCcceeeehh--ccccCCCCCceEecCCCc-ccEEEEeccccccccCCcCcCCCccceeE
Confidence 74 2 4466655 99998898875322 34555554 466777774 446777765432 11 244565 455
Q ss_pred EEEEcCCCCCCCccccCCCccceeeEE
Q 011114 454 PLIVRGPADRPLEYNFGFPLWSRVSIY 480 (493)
Q Consensus 454 Pl~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (493)
-+.|++ |+ ++.||-|.=..+.|.
T Consensus 299 ~~~wde--dg--~pdfgvp~~dt~~~e 321 (324)
T COG3940 299 IINWDE--DG--TPDFGVPEVDTLEIE 321 (324)
T ss_pred EEeecc--CC--CCCCCCCCCceeeeE
Confidence 578987 66 899999987777764
No 29
>cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J. This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). The overall sequence homology between the two families is low (<15% identity), but common sequence motifs have been identified. GH32 enzymes are invertases that also include other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named inverta
Probab=99.74 E-value=2.3e-16 Score=156.03 Aligned_cols=193 Identities=17% Similarity=0.203 Sum_probs=131.9
Q ss_pred CEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccC-CEE
Q 011114 189 RTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRT-GKY 267 (493)
Q Consensus 189 g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~-GkY 267 (493)
|+|+||.+...... .+ .....+++++|+||++|+..+.++...... ..+...+|+|+|++ .+ |+|
T Consensus 14 g~yhlfy~~~~~~~---~~-----~~~~~~~~a~S~D~~~w~~~~~~l~~~~~~----~~~~~~~~~p~v~~--~~dg~~ 79 (276)
T cd08979 14 GKYHLFYLAAPRGG---GD-----GNTSRIGAASSDDGTWWTRPPAPLPPGPPG----SFDDGGVWTPSVVR--DPDGTY 79 (276)
T ss_pred eeEEEEEEccCcCc---CC-----CCcceeEEEEcCCCCccEECCcCccCCCCC----chhcCCeEcceEEE--cCCCeE
Confidence 78999988654211 00 123458899999999999999887322211 12457899999997 45 999
Q ss_pred EEEEEEeCC-CCCcceEEEEEeCCCCCCceecccCC------------CCCCCcCCceEEEcCC-CcEEEEEEecC---C
Q 011114 268 VMWMHIDDC-NYTKAAVGVAISDYPTGPFDYLYSKR------------PHGFDSRDMTIFKDDD-GVAYLVYSSED---N 330 (493)
Q Consensus 268 ylyfs~~~~-~~~~~~IGVA~SdsP~GPf~~~~~~~------------p~g~~siDPsvF~DdD-Gk~YL~~g~~~---n 330 (493)
+|||++... ....++|++|+|++... |+...... ......+||.||.+++ |++||++++.. .
T Consensus 80 ~~~Yt~~~~~~~~~~~i~~A~S~D~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~dP~v~~~~~~g~y~m~~~~~~~~~~ 158 (276)
T cd08979 80 RMFYTGYDRPKGAVQRIGLATSKDLIH-WTKHGPNPVPRWYESGNPGPWDDHAWRDPAVVRDEEGGGWRMYYGARDADER 158 (276)
T ss_pred EEEEecccCCCCCcceEEEEECCCCCc-eEECCCCcceeeeecCCCCCcccccccccEEEEECCCCEEEEEEEeEccCCC
Confidence 999998642 22467899999999764 66543211 1224689999999876 89999999753 2
Q ss_pred CceEEEEcCCCCCCccccEEE--ee---cCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEECCCCCCcee
Q 011114 331 SELHIGPLTSDYLDVSNVVRR--IL---VGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWED 399 (493)
Q Consensus 331 ~~i~iaeLs~D~~~~~g~~~~--i~---~g~~~EgP~i~K~~G~YYL~yS~~tg~~~n~~v~~~Sdsp~GPwt~ 399 (493)
+.|.+++ |+|+.+++..... .. .....|+|.+++.+|+|||+|+... ......+..+..+.++++.
T Consensus 159 ~~i~~a~-S~D~~~W~~~~~~~~~~~~~~~~~~e~P~~~~~~g~~~l~~~~~~--~~~~~~y~vg~~~~~~~~~ 229 (276)
T cd08979 159 GAIGLAT-SPDLIHWTPVPPPPGPRTGYDDGQLEVPQVVKIDGRWYLLYSGRN--EDAKTGYRVGTALFGPGRP 229 (276)
T ss_pred cEEEEEE-CCCCCcceECCCCCCCCCcccCCcCccceEEEECCEEEEEEEecC--ccCCccEEEEecccCCccc
Confidence 4566665 7888887532211 11 2357899999999999999999643 1222334456666677754
No 30
>cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases. Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catal
Probab=99.72 E-value=6.8e-16 Score=155.86 Aligned_cols=177 Identities=19% Similarity=0.220 Sum_probs=128.5
Q ss_pred CceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEE
Q 011114 180 GGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVI 259 (493)
Q Consensus 180 g~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~Vi 259 (493)
.++++.+ |+||||.++.... ..| ....+.+++|+||+||+.++.+|.+.. ..+...+|+|+++
T Consensus 7 ng~~~~~--G~yhlfyq~~p~~---~~~------~~~~wgha~S~Dlv~W~~~~~al~p~~------~~d~~g~~sGsav 69 (298)
T cd08996 7 NGLVYFN--GKYHLFYQYNPFG---PVW------GNMHWGHATSKDLVHWEHLPVALAPDD------PYDSGGCFSGSAV 69 (298)
T ss_pred CeeeEEC--CEEEEEEcCCCCC---CCC------CCcEEEEEEecCccceeECCcccCCCC------cccCCeEEeCeEE
Confidence 3566654 8999998875421 111 235689999999999999999987622 1245689999999
Q ss_pred EEccC-CEEEEEEEEeCCC--CCcceEEEEEeCCCCCCceecccCC----C--CCCCcCCceEEEcCCCcEEEEEEecC-
Q 011114 260 YNDRT-GKYVMWMHIDDCN--YTKAAVGVAISDYPTGPFDYLYSKR----P--HGFDSRDMTIFKDDDGVAYLVYSSED- 329 (493)
Q Consensus 260 yn~~~-GkYylyfs~~~~~--~~~~~IGVA~SdsP~GPf~~~~~~~----p--~g~~siDPsvF~DdDGk~YL~~g~~~- 329 (493)
. .+ |+|+|||++.... ...+.+++|+|++....|+...... + .....+||.||.++ |++||++++..
T Consensus 70 ~--~~~g~~~~~YTg~~~~~~~~~~~~~lA~S~ddg~~w~k~~~~~~~~~~~~~~~~~RDP~V~~~~-g~~~m~~g~~~~ 146 (298)
T cd08996 70 V--DDNGKLVLFYTGNVKLDGGRRQTQCLAYSTDDGRTFTKYEGNPVIPPPDGYTTHFRDPKVFWHD-GKWYMVLGAGTE 146 (298)
T ss_pred E--cCCCcEEEEEeceeCCCCCceEEEEEEEEcCCCCEEEECCCCceEcCCCCCCCcccCCeEEeEC-CEEEEEEEEEec
Confidence 7 45 9999999986431 2467899999997678898754321 1 12468999999975 89999999853
Q ss_pred --CCceEEEEcCCCCCCccccEEE----eecCceeeeeEEEEEC--CEEEEEEeCC
Q 011114 330 --NSELHIGPLTSDYLDVSNVVRR----ILVGQHREAPALFKHL--GTYYMVTSGC 377 (493)
Q Consensus 330 --n~~i~iaeLs~D~~~~~g~~~~----i~~g~~~EgP~i~K~~--G~YYL~yS~~ 377 (493)
.+.+.+++ |+|+.+++-.... ...+...|+|.+|+.+ |+|||++|..
T Consensus 147 ~~~~~i~ly~-S~Dl~~W~~~~~~~~~~~~~~~~~EcP~l~~l~~~~k~vL~~s~~ 201 (298)
T cd08996 147 DGTGRILLYR-SDDLKNWEYLGELLTSLGDFGYMWECPDLFPLDVEGKWVLIFSPQ 201 (298)
T ss_pred CCCcEEEEEE-CCCCCCCEEcceecccCCCccceEeCCcEEEECCCCeEEEEECCC
Confidence 24555555 8898887532211 1124579999999999 9999999864
No 31
>cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function. This subfamily has sequences similar to the glycosyl hydrolase family 43 (GH43) and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.60 E-value=1.3e-13 Score=137.62 Aligned_cols=217 Identities=13% Similarity=0.144 Sum_probs=136.9
Q ss_pred CCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEece--eccCCCcccccccCCCCeeeec
Q 011114 179 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGI--VLAAEETNETHDLYKLNVLERP 256 (493)
Q Consensus 179 gg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~--vL~~~~~~~~~~~~~~~~iWAP 256 (493)
+|++++. +|+|||+.+..... ....|.+.+|+|++||+..+. +++..+.. +....+|+|
T Consensus 2 nP~v~~~--~G~y~l~y~~~~~~------------~~~~ig~A~S~Dg~~~~~~~~~~i~p~~~~~-----~~~~gv~dP 62 (268)
T cd08993 2 NPAVVYD--NGEFYLLYRAAGND------------GVIRLGLARSRDGLHFEIDPDPPVWPPPEDG-----FEEGGVEDP 62 (268)
T ss_pred cCeEEEE--CCEEEEEEEEECCC------------CceEEEEEEECCCceEEECCcceEcCCCCCc-----ccccCccCc
Confidence 3567765 48999998753211 123588999999999998763 33422221 235679999
Q ss_pred eEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCCCCCCCcCCceEEEc-CCCcEEEEEEec-----CC
Q 011114 257 KVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKD-DDGVAYLVYSSE-----DN 330 (493)
Q Consensus 257 ~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~siDPsvF~D-dDGk~YL~~g~~-----~n 330 (493)
.|++ .+|+|||+|++........+|++|+|++. ..|+..+.. .....+|+.+|.+ .||++||+|... ..
T Consensus 63 ~v~~--~~g~y~m~Yta~~~~~~~~~i~lA~S~D~-~~W~~~~~~--~~~~~~d~~~~p~~~~g~y~m~~r~~~~~~~~~ 137 (268)
T cd08993 63 RIVK--IDDTYYITYAARPNAPNGTRIGLATTKDF-ITFERLGTS--LVPNNRDGILFPEKINGKYVMLHRPFEYGGTSP 137 (268)
T ss_pred EEEE--ECCEEEEEEEccCCCCCCcEEEEEEeCCc-ceEEEeccc--CCCCCCCEEEeeEEECCEEEEEEccccCCCCCC
Confidence 9997 79999999998753224578999999985 678876432 1234579988864 489999999643 23
Q ss_pred CceEEEEcCCCCCCccccEEEeec-------CceeeeeEEEEECCEEEEEEeCCC-CCCCCcEEEEEE---CCCCCCcee
Q 011114 331 SELHIGPLTSDYLDVSNVVRRILV-------GQHREAPALFKHLGTYYMVTSGCT-GWAPNEALVHAA---ESIMGPWED 399 (493)
Q Consensus 331 ~~i~iaeLs~D~~~~~g~~~~i~~-------g~~~EgP~i~K~~G~YYL~yS~~t-g~~~n~~v~~~S---dsp~GPwt~ 399 (493)
..|.+++ |+|+..|......+.. ....+||..++.++.+||+|-+.. .+...|.+++.- ++|.-.|.+
T Consensus 138 ~~I~lA~-S~Dl~~W~~~~~~~~~~~~~wd~~~ig~g~~pi~~~~g~l~~yhg~~~~~~~~Y~~g~~lld~~dp~~~~~~ 216 (268)
T cd08993 138 PDMWLSF-SPDLVHWGNHRFVLSPRPNHWEQLKIGAGTPPIKTEEGWLVLYHGVDQSCGSVYRLGAALLDLEDPTKVIAR 216 (268)
T ss_pred CcEEEEE-CCCcCccCCCeEEecCCCCceeeceecCCCCCcCcCCCEEEEEeccCCCCCcEEeeeEEEEcccCchHHhcc
Confidence 5788886 7889888654322221 124566777765433667774432 222446666542 244333446
Q ss_pred CCCccccCCccceeeccCCCc
Q 011114 400 MGNPCIGGNKVFRLTTFFAQS 420 (493)
Q Consensus 400 ~g~Pv~~~~~~~~~~t~gsq~ 420 (493)
..+|++.+.......+.+++.
T Consensus 217 ~~~p~l~p~~~~e~~G~~~~v 237 (268)
T cd08993 217 SRRPLLEPETDYETGGFIPNV 237 (268)
T ss_pred cCCceecCCcccccccccCCE
Confidence 678888764322223444443
No 32
>cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins. This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, f
Probab=99.59 E-value=7.4e-14 Score=140.67 Aligned_cols=184 Identities=17% Similarity=0.162 Sum_probs=126.5
Q ss_pred eeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCC-CCCCEE-eceeccCCCcccccccCCCCeee
Q 011114 177 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKD-MWTWKN-EGIVLAAEETNETHDLYKLNVLE 254 (493)
Q Consensus 177 ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~D-LvnWt~-~G~vL~~~~~~~~~~~~~~~~iW 254 (493)
++.|.+++.+ |+||||.+......- .+.. .....|.+..|++ +.+|+. .+.+|...+..| ....++
T Consensus 80 ~~~P~vi~~~--g~yyl~Y~~~~~~~~--~~~~---~~~~~ig~a~s~~~~g~w~~~~~pvl~~~~~~~-----~~~~~~ 147 (291)
T cd08994 80 THNPTIKRFD--GKYYLYYIGNTDPGP--RPGH---RNNQRIGVAVSDSLDGPWKRSDQPILEPRPGGW-----DNLITS 147 (291)
T ss_pred ccCCeEEEEC--CEEEEEEEcccCCcc--cccC---CCCceEEEEEeCCCCCCcEECCCceecCCCCcc-----cccccc
Confidence 4678888764 899999886432000 0000 1134588888988 569998 566776543322 346789
Q ss_pred eceEEEEccCCEEEEEEEEeCCCC--CcceEEEEEeCCCCCCceecccCC----CCCCCcCCceEEEcCCCcEEEEEEec
Q 011114 255 RPKVIYNDRTGKYVMWMHIDDCNY--TKAAVGVAISDYPTGPFDYLYSKR----PHGFDSRDMTIFKDDDGVAYLVYSSE 328 (493)
Q Consensus 255 AP~Viyn~~~GkYylyfs~~~~~~--~~~~IGVA~SdsP~GPf~~~~~~~----p~g~~siDPsvF~DdDGk~YL~~g~~ 328 (493)
+|.|+++ .+|+|||||++...+. ...++|+|+|+++.|+|+...... ......+||.||+++ |++||+|+..
T Consensus 148 ~p~v~~~-~~g~~~m~y~g~~~~~~~~~~~~gla~s~d~~g~~~~~~~~~v~~~~~~~~~~dP~V~~~~-g~yym~~~~~ 225 (291)
T cd08994 148 NPAVTRR-PDGSYLLVYKGGTYNPTKGNRKYGVAIADSPTGPYTKVSGPPFIEPGDNGNTEDPFVWYDK-GQFHMIVKDM 225 (291)
T ss_pred CCCeEEe-CCCCEEEEEeccccCCCCCcEEEEEEEeCCCCCCCEECCCCccccCCCCCceeCceEEEeC-CEEEEEEeec
Confidence 9999973 3899999999764321 357899999999999999764222 123568999999975 8999999985
Q ss_pred CC------CceEEEEcCCCCCCcccc--EE---Eee-------cCceeeeeEEE-EECCEEEEEEe
Q 011114 329 DN------SELHIGPLTSDYLDVSNV--VR---RIL-------VGQHREAPALF-KHLGTYYMVTS 375 (493)
Q Consensus 329 ~n------~~i~iaeLs~D~~~~~g~--~~---~i~-------~g~~~EgP~i~-K~~G~YYL~yS 375 (493)
.+ ..+.+++ |+|+.+|+-. .. .+. .....|.|.|+ +.+|+.+++|+
T Consensus 226 ~~~~~~~~~~i~~a~-S~Dg~~W~~~~~~~~~~~~~~~~~~~~~~~~~erP~v~~~~~g~~~~l~~ 290 (291)
T cd08994 226 LGYVTGEKGGGAYFR-SKDGIHWKLAPGLAYSTTVEWTDGTTEDWGRLERPQVLLDEDGKPTYLFF 290 (291)
T ss_pred ccCcCCCCceEEEEE-CCCCCCceecCcceeeeeEEcCCCcccccccccCCEEEEcCCCCEEEEec
Confidence 32 3455555 7888777422 21 111 13568999999 99999999987
No 33
>cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of
Probab=99.59 E-value=6.4e-14 Score=140.20 Aligned_cols=206 Identities=20% Similarity=0.178 Sum_probs=135.0
Q ss_pred EEecCccccchhhhhhccccCCCCCCCCCChhhhcCCCcccceeeecccCCcceEEeecCCCCCCCCCCCcCCCCeEEe-
Q 011114 83 HISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYY- 161 (493)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~~~~~~~~~yi- 161 (493)
...+...|+||++||.++.+|+.. ..|.|.. +..|||.|... +.. ..||+ ++.+. .....--+..
T Consensus 31 ~~~~v~~S~Dl~~W~~~g~~l~~~---~~~~~~~--~~~wAP~i~~~---~g~-yy~yy----~~~~~-~~~~~igva~s 96 (274)
T cd08990 31 NDYHVFSSPDLVNWTDHGVILSVT---DFPAWAK--GQAWAPDVVEK---NGK-YYLYF----PARDK-DGGFAIGVAVS 96 (274)
T ss_pred ceEEEEECCCCCCcEECcccccCC---CCCcccc--CCcCcCeEEEE---CCE-EEEEE----EeecC-CCceEEEEEEe
Confidence 346778899999999999999864 2245664 47899998876 555 55666 33322 1001111111
Q ss_pred -ecCCceeCCCCCcE--------EeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEe
Q 011114 162 -YPGRIWLDTEGAPI--------QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNE 232 (493)
Q Consensus 162 -~pG~~w~dt~G~pI--------~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~ 232 (493)
.|..+|.+....++ .+.|++++.++ +|++|++-... ...+.+--|.|+.+|+..
T Consensus 97 ~~p~Gpw~~~~~~~~~~~~~~~~~~iDp~vf~d~-dG~~yl~~~~~----------------~~~~~~~l~~d~~~~~~~ 159 (274)
T cd08990 97 DSPAGPFKDAGGPILITTPSGGWYSIDPAVFIDD-DGQAYLYWGGG----------------LGLRVAKLKPDMLSLKGE 159 (274)
T ss_pred CCCCCCCCCCCCccccccCCCCCCccCCcEEECC-CCCEEEEECCc----------------CCEEEEEeCccccccCCC
Confidence 34556777654442 34688888764 57888874321 011233447799999987
Q ss_pred ceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCCC--CCCCcCC
Q 011114 233 GIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRP--HGFDSRD 310 (493)
Q Consensus 233 G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p--~g~~siD 310 (493)
..++...+. +. ......+|||.|++ ++|+|||+|+... ...+++|+|++|+|||+..+.... ......+
T Consensus 160 ~~~i~~~~~-~~--~~~~~~~EgP~i~k--~~G~YYl~yS~~~----~~~~~~a~s~~p~GP~~~~g~~~~~~~~~g~gh 230 (274)
T cd08990 160 PVEIVITDG-AG--DELRRFFEAPWVHK--RNGTYYLSYSTGD----PEEIAYATSDSPLGPFTYRGVILDPPVNGGTNH 230 (274)
T ss_pred cEEEEeccc-cC--CCCCCcccceeEEE--ECCEEEEEEECCC----CcEEEEEEcCCCCCCcccCcEEecCCCCCCCCC
Confidence 766543221 10 11245689999996 8999999999854 367999999999999997653221 1235678
Q ss_pred ceEEEcCCCcEEEEEEecC
Q 011114 311 MTIFKDDDGVAYLVYSSED 329 (493)
Q Consensus 311 PsvF~DdDGk~YL~~g~~~ 329 (493)
+++|.+ +|+.|++|....
T Consensus 231 ~~~~~~-~g~~y~~yh~~~ 248 (274)
T cd08990 231 GSIVEF-KGQWYLFYHRAT 248 (274)
T ss_pred CeEEEE-CCeEEEEEECCc
Confidence 888864 599999998754
No 34
>cd08999 GH43_ABN_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=99.58 E-value=9.5e-14 Score=139.09 Aligned_cols=211 Identities=20% Similarity=0.206 Sum_probs=131.6
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCChhhhcCCCcccceeeecccCCcceEEeecCCCCCCCCCCCcCCCCeEEe---
Q 011114 85 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYY--- 161 (493)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~~~~~~~~~yi--- 161 (493)
+.+..|+||++|+.++.+||+. +.|.. .+..|||.|... +-. ..||+ ++.+... .+..+.+
T Consensus 32 i~~~~S~Dl~~W~~~g~~l~~~-----~~~~~-~~~~waP~v~~~---~g~-y~~~y----~~~~~~~--~~~~i~~a~s 95 (287)
T cd08999 32 VPIATSTDLVNWTYLGDAFPKL-----PRWWT-GGDFWAPDVSYV---NGK-YVLYY----SARDKGS--GGQCIGVATA 95 (287)
T ss_pred EEEEECCCCCCcEECCcccCCC-----CCccc-CCCccCceEEEE---CCE-EEEEE----EeecCCC--CCEEEEEEEC
Confidence 5678899999999999888765 34433 457899988877 545 55665 2222210 1111222
Q ss_pred -ecCCceeCCCCCcE-------EeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEE-EeCCCCCCEEe
Q 011114 162 -YPGRIWLDTEGAPI-------QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCY-SSKDMWTWKNE 232 (493)
Q Consensus 162 -~pG~~w~dt~G~pI-------~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~-sS~DLvnWt~~ 232 (493)
-|...|.+....++ .+.|+.|+.++ +|++||+-...... .+. ...+.+. .|+|+..|+..
T Consensus 96 ~~p~g~~~~~~~~~~~~~~~~~~~~Dp~v~~d~-dG~~Yl~~~~~~~~------~~~----~~~i~~~~ls~d~~~~~~~ 164 (287)
T cd08999 96 DSPLGPFTDHGKPPLCCPEGEGGAIDPSFFTDT-DGKRYLVWKSDGNS------IGK----PTPIYLQELSADGLTLTGE 164 (287)
T ss_pred CCCCCCCccCCcceEecCCCCCCccCCCeEECC-CCCEEEEEeccCCC------CCC----CceEEEEEeCCCCccccCC
Confidence 13345654322222 24678888864 57888764322110 000 0113332 37899999876
Q ss_pred ceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCC--cceEEEEEeCCCCCCceecccC--C---CCC
Q 011114 233 GIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYT--KAAVGVAISDYPTGPFDYLYSK--R---PHG 305 (493)
Q Consensus 233 G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~~~--~~~IGVA~SdsP~GPf~~~~~~--~---p~g 305 (493)
...+......+ ....+|+|.+++ .+|+|||+|+....... ..+|++|+|++|.|||++.... . +.+
T Consensus 165 ~~~i~~~~~~~-----~~~~~EgP~i~k--~~g~yyl~~S~~~~~~~~~~y~i~~~~s~~~~Gpw~~~~~~~~~~~~~~~ 237 (287)
T cd08999 165 PVRLLRNDEDW-----EGPLVEAPYLVK--RGGYYYLFYSAGGCCSGASTYAVGVARSKSLLGPYVKAPGPPLLTSSGNG 237 (287)
T ss_pred cEeeecccccc-----cCCceEeeEEEE--ECCEEEEEEEcCCccCCCCCEEEEEEEeCCCcCCcCCCCCCcceeccCCC
Confidence 54432222222 345799999996 89999999998643222 5789999999999999975321 1 111
Q ss_pred --CCcCCceEEEcCCCcEEEEEEecC
Q 011114 306 --FDSRDMTIFKDDDGVAYLVYSSED 329 (493)
Q Consensus 306 --~~siDPsvF~DdDGk~YL~~g~~~ 329 (493)
...-++++|+++||+.|++|.+..
T Consensus 238 ~~~g~gh~~~~~~~~g~~~~~yh~~~ 263 (287)
T cd08999 238 RWVGPGHNTVVTDDDGRDWLLYHAWD 263 (287)
T ss_pred eEEcCCCCeEEECCCCCEEEEEEEEc
Confidence 234688999998999999998753
No 35
>TIGR01322 scrB_fam sucrose-6-phosphate hydrolase.
Probab=99.53 E-value=3.8e-13 Score=144.16 Aligned_cols=169 Identities=20% Similarity=0.279 Sum_probs=119.4
Q ss_pred CCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEE
Q 011114 188 SRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKY 267 (493)
Q Consensus 188 ~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkY 267 (493)
+|+|+||.++.... ..| ....+.+++|+||+||+.++.+|.+... .+..++|+++++. .+|++
T Consensus 36 ~G~yHlfyq~~p~~---~~~------g~~~Wgha~S~Dlv~W~~~~~al~P~~~------~d~~G~~sGsav~--~~g~~ 98 (445)
T TIGR01322 36 KGEYHLFYQWFPFG---PVH------GLKSWGHYTSKDLVHWEDEGVALAPDDP------YDSHGCYSGSAVD--NNGQL 98 (445)
T ss_pred CCEEEEEEccCCCC---Ccc------CceEEEEEECCCccccEECCccCcCCCc------ccCCceEECeEEe--eCCEE
Confidence 49999998875421 112 1345889999999999999999976542 2346799999996 78999
Q ss_pred EEEEEEeCCC---CCcceEEEEEeCCCCCCceeccc-C---CCCC--CCcCCceEEEcCCCcEEEEEEecC---CCceEE
Q 011114 268 VMWMHIDDCN---YTKAAVGVAISDYPTGPFDYLYS-K---RPHG--FDSRDMTIFKDDDGVAYLVYSSED---NSELHI 335 (493)
Q Consensus 268 ylyfs~~~~~---~~~~~IGVA~SdsP~GPf~~~~~-~---~p~g--~~siDPsvF~DdDGk~YL~~g~~~---n~~i~i 335 (493)
+|||++.... ...+.+++|+|++ .+.|+..+. . .+.+ ...+||.||.+ +|++||++++.. .+.+.+
T Consensus 99 ~l~YTg~~~~~~~~~~~~q~lA~S~D-g~~~~k~~~pvi~~~~~~~~~~fRDP~V~~~-~g~~~M~~g~~~~~~~g~i~l 176 (445)
T TIGR01322 99 TLMYTGNVRDSDWNRESYQCLATMDD-DGHFEKFGIVVIELPPAGYTAHFRDPKVWKH-NGHWYMVIGAQTETEKGSILL 176 (445)
T ss_pred EEEEeccccCCCCCeeEEEEEEEcCC-CCeEEECCCceEeCCCCCCcCcCCCCcEEeE-CCEEEEEEEEecCCCceEEEE
Confidence 9999985321 1235578999988 578987542 1 1222 25699999985 689999998742 234444
Q ss_pred EEcCCCCCCcc--ccEEEee------cCceeeeeEEEEECCEEEEEEeC
Q 011114 336 GPLTSDYLDVS--NVVRRIL------VGQHREAPALFKHLGTYYMVTSG 376 (493)
Q Consensus 336 aeLs~D~~~~~--g~~~~i~------~g~~~EgP~i~K~~G~YYL~yS~ 376 (493)
.. |+|+.+|+ +...... .+...|+|.+|+.+|+++|++|.
T Consensus 177 y~-S~Dl~~W~~~g~~~~~~~~~~~~~g~~~ECPdlf~l~~k~vL~~s~ 224 (445)
T TIGR01322 177 YR-SKDLKNWTFVGEILGDGQNGLDDRGYMWECPDLFSLDGQDVLLFSP 224 (445)
T ss_pred EE-CCCcccCeEecccccccccccCCccceEECCeEEEECCcEEEEEec
Confidence 44 88988874 3321111 13479999999999999999984
No 36
>smart00640 Glyco_32 Glycosyl hydrolases family 32.
Probab=99.53 E-value=5e-13 Score=142.95 Aligned_cols=177 Identities=21% Similarity=0.216 Sum_probs=121.9
Q ss_pred ceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEE
Q 011114 181 GILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIY 260 (493)
Q Consensus 181 ~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~Viy 260 (493)
+++++ +|+|+||.++.... ..| ....|.+++|+||++|+.++.+|.+... .+..++|+++++.
T Consensus 14 Gl~~~--~G~yHlFyq~~p~~---~~~------g~~~Wgha~S~Dlv~W~~~~~aL~P~~~------~d~~g~~sGsav~ 76 (437)
T smart00640 14 GLIYY--KGKYHLFYQYNPFG---PVW------GNIHWGHAVSKDLVHWTHLPVALAPDEW------YDSNGVFSGSAVI 76 (437)
T ss_pred eeeEE--CCEEEEEEecCCCC---CCC------CCeEEEEEEcCCcceeeecCcccCCCCc------CCCCcEEEEEEEE
Confidence 46665 49999999976421 112 1345899999999999999999876542 1345699999996
Q ss_pred EccCCEEEEEEEEeCCC-----CCcceEEEEEeCCCCCCceecc--cC---CCC--CCCcCCceEEEcCCCcEEEEEEec
Q 011114 261 NDRTGKYVMWMHIDDCN-----YTKAAVGVAISDYPTGPFDYLY--SK---RPH--GFDSRDMTIFKDDDGVAYLVYSSE 328 (493)
Q Consensus 261 n~~~GkYylyfs~~~~~-----~~~~~IGVA~SdsP~GPf~~~~--~~---~p~--g~~siDPsvF~DdDGk~YL~~g~~ 328 (493)
.+++++|||++.... .....+.++.+++....|+... +. .|. ....+||.||.+++|++||++++.
T Consensus 77 --~~~~~~~~YTg~~~~~~~~~~~~~~~~~~ass~d~~~w~k~~~~Pvi~~~p~~~~~~fRDP~Vf~~~~~~~~m~~g~~ 154 (437)
T smart00640 77 --DPGNLSLLYTGNVAIDTNVQVQRQAQQLAASDDLGGTWTKYPGNPVLVPPPGIGTEHFRDPKVFWYDGDKWYMVIGAS 154 (437)
T ss_pred --CCCceEEEEcCCcccccccCcccEEEEEEEECCCCCeeEECCCCcEEeCCCCCCCCCcCCCCccEECCCEEEEEEEEE
Confidence 677899999876311 1223444555656568898752 21 121 246899999998778999999964
Q ss_pred C---CCceEEEEcCCCCCCcc--ccEEEe---ecCceeeeeEEEEECC-----EEEEEEeCC
Q 011114 329 D---NSELHIGPLTSDYLDVS--NVVRRI---LVGQHREAPALFKHLG-----TYYMVTSGC 377 (493)
Q Consensus 329 ~---n~~i~iaeLs~D~~~~~--g~~~~i---~~g~~~EgP~i~K~~G-----~YYL~yS~~ 377 (493)
. .+.+.+.+ |+|+.+|+ +..... ..+...|+|.+|+.++ +++|++|..
T Consensus 155 ~~~~~G~i~ly~-S~Dl~~W~~~~~~~~~~~~~~g~~wECPdlf~l~~~~~~~~~vLi~s~~ 215 (437)
T smart00640 155 DEDKTGIALLYR-STDLKNWTLLGELLHSGVGDTGGMWECPDLFPLPGDGDTSKHVLKVSPQ 215 (437)
T ss_pred ecCCCeEEEEEE-CCCcccCeECCcccccCCCCccceEECCcEEEeCCCCCceeEEEEECcC
Confidence 2 12355554 78888875 332211 1236899999999998 999999965
No 37
>PF02435 Glyco_hydro_68: Levansucrase/Invertase; InterPro: IPR003469 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family consists of the glycosyl hydrolase 68 family (GH68 from CAZY), including several bacterial levansucrase enzymes, and invertase from Zymomonas. Levansucrase (2.4.1.10 from EC), also known as beta-D-fructofuranosyl transferase, catalyses the conversion of sucrose and (2,6-beta-D-fructosyl)(N) to glucose and (2,6-beta-D-fructosyl)(N+1), where other sugars can also act as fructosyl acceptors. Invertase, or extracellular sucrase (3.2.1.26 from EC), catalyses the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides.; GO: 0050053 levansucrase activity, 0009758 carbohydrate utilization; PDB: 2YFR_A 2YFT_A 2YFS_A 1W18_A 3OM7_B 3OM4_C 3OM6_D 3OM5_A 3OM2_A 1PT2_A ....
Probab=99.51 E-value=1.4e-12 Score=136.77 Aligned_cols=250 Identities=22% Similarity=0.309 Sum_probs=145.7
Q ss_pred CCeEEeecCCceeCCCCCcEEeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCC----CCEE
Q 011114 156 NDSFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMW----TWKN 231 (493)
Q Consensus 156 ~~~~yi~pG~~w~dt~G~pI~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLv----nWt~ 231 (493)
.+.+.|-.+=+..|.+|+++..+|-.|++. |.+..+. .+. .+.+...|.++.|++.. +|++
T Consensus 51 ~~dldVWDsWPLqd~~G~~~~~~Gy~vvfa-------L~a~r~~--~~~------~Rh~~A~I~~fY~k~G~~~~~~W~~ 115 (428)
T PF02435_consen 51 ADDLDVWDSWPLQDADGNVVNYNGYQVVFA-------LTADRHE--DPD------DRHDDARIYLFYSKDGDNANDGWKN 115 (428)
T ss_dssp TTE-EEEEEEEEE-TTSSBEEBTTEEEEEE-------EEE-TT----GG------GCSCGEEEEEEEEETT--SGGG-EE
T ss_pred ccceeeeccceeecccccEEEECCEEEEEE-------EecCCcc--CCc------cccCCcEEEEEEecCCCCccCCceE
Confidence 335777666666777788777666555531 3332221 111 12334568999998887 8999
Q ss_pred eceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC---CCCcce-----EEEEEeCC----CCCCceecc
Q 011114 232 EGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC---NYTKAA-----VGVAISDY----PTGPFDYLY 299 (493)
Q Consensus 232 ~G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~---~~~~~~-----IGVA~Sds----P~GPf~~~~ 299 (493)
.|.|++...... ....-|+.+++.+..+|+-.|||++.+. ....++ +|.+.+++ .+| |+...
T Consensus 116 ~G~vf~~g~~~~-----~~s~EWSGSA~l~~~dg~I~LfYTav~~~~~~~~~Q~l~t~~~g~~~~d~~~v~i~g-~~~~~ 189 (428)
T PF02435_consen 116 GGPVFPEGASFV-----PGSREWSGSATLNNDDGSIQLFYTAVGFSDTPTFRQRLATATLGLIHADDDGVWITG-FSNHH 189 (428)
T ss_dssp EEESS-TTCCCC-----GCEEEEEEEEEESTTTSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEECSTEEEEEE-EEEEE
T ss_pred CcccCCCCCCCC-----ccCcEecCceEEcCCCCeEEEEEeecccCCCcchhhhhhhHhcCeeecCCCceeEcc-cccee
Confidence 999998754300 2457899999996558999999987532 122233 34444454 222 22211
Q ss_pred c-CCCC-----------CCCcCCceEEEc-CCCcEEEEEEecC-----------------------------------CC
Q 011114 300 S-KRPH-----------GFDSRDMTIFKD-DDGVAYLVYSSED-----------------------------------NS 331 (493)
Q Consensus 300 ~-~~p~-----------g~~siDPsvF~D-dDGk~YL~~g~~~-----------------------------------n~ 331 (493)
. +.+. ++..+||.+|+| .||+.||+|.+.. |+
T Consensus 190 ~lfe~DG~~Yqt~~Q~~~~afRDP~~f~DP~~G~~YLvFEgNtg~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~A~~~ng 269 (428)
T PF02435_consen 190 ELFEGDGKHYQTYEQNPGYAFRDPHVFEDPEDGKRYLVFEGNTGGERNWANYGGDDLGNVPGDPKLENNDNKSGASYANG 269 (428)
T ss_dssp EEES--SSSB--HHHHHH---EEEEEEEETTTTEEEEEEEEEBSTTSBGGGT-SHHHHHHHHHHHHHHSCCHHHHHH-EE
T ss_pred EeeccchhhhhChhhcCCccccCCeeEECCCCCcEEEEEecccCCCCCccccCccccccccccccccccccccccceecc
Confidence 1 2222 256899999999 7999999998742 12
Q ss_pred ceEEEEcCCCCCCccccEEEe----ecCceeeeeEEEEECCEEEEEEeC-CCCC-----CCCcEEEEE-ECCCCCCceeC
Q 011114 332 ELHIGPLTSDYLDVSNVVRRI----LVGQHREAPALFKHLGTYYMVTSG-CTGW-----APNEALVHA-AESIMGPWEDM 400 (493)
Q Consensus 332 ~i~iaeLs~D~~~~~g~~~~i----~~g~~~EgP~i~K~~G~YYL~yS~-~tg~-----~~n~~v~~~-Sdsp~GPwt~~ 400 (493)
.|.|++|+.+..+.......+ .....+|.|+|+++|||||||.+. .... .++..++.. ++++.|||++.
T Consensus 270 ~iGi~~~~~~~~~~w~~~~PL~~a~~v~de~ERP~iv~~~gkyYLFt~s~~~~~a~g~~g~d~~yg~~~~~~L~g~y~PL 349 (428)
T PF02435_consen 270 AIGIAKLTNDDGTVWELLPPLLSANGVNDELERPHIVFMNGKYYLFTISHLSTFADGIVGPDGVYGFVVSDSLRGPYKPL 349 (428)
T ss_dssp EEEEEEESTTTTSEEEEEEEEEEETTTBS-EEEEEEEEETTEEEEEEEEEGGGBSTTHHTTSEEEEEEEESSTTS--EEG
T ss_pred eeeeEEecCCCCCccEEeCcceecccccccccCCcEEEECCEEEEEEEeccccccCCccCCCeEEEEEECccccCCceec
Confidence 478999988764322222222 235789999999999999999963 1111 133344444 66699999998
Q ss_pred -CCccccCCc-cceeeccCCCceEEEcc
Q 011114 401 -GNPCIGGNK-VFRLTTFFAQSTYVIPL 426 (493)
Q Consensus 401 -g~Pv~~~~~-~~~~~t~gsq~~~V~~~ 426 (493)
|.-++-+++ .-....+.+.|+++++.
T Consensus 350 NgsGlVl~np~~~~p~~~qtYS~~~~p~ 377 (428)
T PF02435_consen 350 NGSGLVLGNPPSQAPWRTQTYSHYVMPD 377 (428)
T ss_dssp CCTSEEEEESTTSTTSTTCEEEEEEECC
T ss_pred CCCceEecCCCCCCCccceeeEEEEECC
Confidence 544443333 21112366678899986
No 38
>cd08986 GH43_7 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.50 E-value=5.6e-13 Score=133.65 Aligned_cols=204 Identities=13% Similarity=0.048 Sum_probs=128.5
Q ss_pred ecCccccchhhhhhccccCCCCCCC-------CCChhhhcCCCcccceeeecccCCcceEEeecCCCCCCCCCCCcCCCC
Q 011114 85 SHNPSFRELVEVEEENIQIPPPRGK-------RSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGND 157 (493)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~p~~~~~-------~~p~~~~~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~~~~~~~ 157 (493)
+++..|+||++||.++.+++.+..- ..+.|. .+..|||.|... +.. ..||+ ++.+... ...
T Consensus 38 i~i~~S~DLv~W~~~g~v~~~~~~~~~~~~~~~~~~~~--~~~~WAP~v~~~---~g~-yyl~~----s~~~~~~--~~~ 105 (269)
T cd08986 38 IPLWRSKDLKKWESLGLIWDREKDATWQSYWIDEDDWY--KNAVWAPELHYI---KGR-WYLVA----CMNNPGY--GGS 105 (269)
T ss_pred eEEEeCccccCccccCcccccCCcccccccccccCCcc--cCCcCCceEEEE---CCE-EEEEE----EccCCCC--Cce
Confidence 5678999999999999888755100 111232 457899999887 655 56665 3332210 011
Q ss_pred eEEe----ecCCceeCCCCC-c-EEeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEE
Q 011114 158 SFYY----YPGRIWLDTEGA-P-IQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKN 231 (493)
Q Consensus 158 ~~yi----~pG~~w~dt~G~-p-I~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~ 231 (493)
.+.+ .|..+|.+..+. + ..++|+.++.++ +|+.|++-.+. .+ +--+.|+.....
T Consensus 106 ~i~va~a~~p~Gp~~~~~~~~~~~~~iD~~~f~D~-DG~~Yl~~~~~------------------~i-~~l~~d~~~~~~ 165 (269)
T cd08986 106 SILLSTSGKIEGPYKHITGNKPLFPGIDPSLFEDD-DGKVYLVWHNT------------------LI-ARLKDDLSGLAG 165 (269)
T ss_pred EEEEEeCCCCCCCcEeccCCCCCCCccCCceEEcC-CCCEEEEeeCC------------------ce-EeccCccccccC
Confidence 1222 356678776544 3 246788888875 67888873211 01 112566665554
Q ss_pred eceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC---CCCcceEEEEEeCCCCCCceecccCCCCCCCc
Q 011114 232 EGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC---NYTKAAVGVAISDYPTGPFDYLYSKRPHGFDS 308 (493)
Q Consensus 232 ~G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~---~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~s 308 (493)
....+...... .+....+|+|.|++ ++|+|||+|++... .....+|+||+|++|.|||++.... ....
T Consensus 166 ~~~~~~~~~~~----~~~~~~~EgP~i~k--~~G~YYL~yS~~~~~~~~~~~y~v~va~S~s~~GPy~~~~~~---~~g~ 236 (269)
T cd08986 166 DPVRIDPSPTF----YKDEIGHEGAFVFK--YGGKYYLFGTAWSTDKGRKGSYDLYYAVADKITGPYGARYFA---GRFL 236 (269)
T ss_pred CcEEEeccccc----ccCCccccccEEEE--ECCEEEEEEeecCCCCCCCCceEEEEEEcCCCCCCccccCcc---cccc
Confidence 44333221110 01235699999996 89999999987432 1235689999999999999986421 1223
Q ss_pred CCceEEEcCCCcEEEEEEecC
Q 011114 309 RDMTIFKDDDGVAYLVYSSED 329 (493)
Q Consensus 309 iDPsvF~DdDGk~YL~~g~~~ 329 (493)
-+.++|+|+||+.|+++.++.
T Consensus 237 Gh~~~v~~~~G~~~~~~h~~~ 257 (269)
T cd08986 237 GHNTPFQDLDGRWWCTAFFNP 257 (269)
T ss_pred CCCceEECCCCCEEEEEEcCC
Confidence 466799999999999998764
No 39
>cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.49 E-value=1.3e-12 Score=130.74 Aligned_cols=197 Identities=19% Similarity=0.182 Sum_probs=127.7
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCChhhhcCCCcccceeeecccCCcceEEeecCCCCCCCCCCCcCCCCeEEeecC
Q 011114 85 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPG 164 (493)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~~~~~~~~~yi~pG 164 (493)
.++..|+||++||+++.+||+.. +.|.. ...|||.|... +.. ..||+ ++. . ...-+..-.|.
T Consensus 36 ~~~~~S~Dl~~W~~~g~~l~~~~----~~~~~--~~~wAP~v~~~---~g~-yy~yy----s~~---~-~i~va~s~~p~ 97 (275)
T cd09004 36 FDVFSSKDLVNWTKEGIILDMAD----VSWAN--RAAWAPSVIER---NGK-YYFYF----SAN---G-GIGVAVADSPL 97 (275)
T ss_pred EEEEECCCCCCceECcccccccC----CcccC--CCcCCCeEEEE---CCE-EEEEE----EcC---C-cEEEEEeCCCC
Confidence 56788999999999999997641 35553 47999998887 655 55555 221 1 01111112355
Q ss_pred CceeCCCCCcEE--------eeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEE-EEEeCCCCCCEEecee
Q 011114 165 RIWLDTEGAPIQ--------AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVG-CYSSKDMWTWKNEGIV 235 (493)
Q Consensus 165 ~~w~dt~G~pI~--------ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~-v~sS~DLvnWt~~G~v 235 (493)
.+|.+..++|+. +.|+.|+.++ +|++||+-... + ++. +--|.|+.+|+.....
T Consensus 98 gp~~~~~~~p~~~~~~~~~~~iDp~vf~d~-dG~~yl~~~~~-~----------------~~~i~~l~~d~~~~~~~~~~ 159 (275)
T cd09004 98 GPFKDALGKPLIDKFTFGAQPIDPDVFIDD-DGQAYLYWGGW-G----------------HCNVAKLNEDMISFDGERDG 159 (275)
T ss_pred CCCCCCCCCccccCCcCCCCccCCCeEECC-CCCEEEEEcCc-C----------------CEEEEEECCCcccccCccee
Confidence 667765566653 3577888765 57787763210 0 112 2347889888766554
Q ss_pred ccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccC---CCCC--CCcCC
Q 011114 236 LAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSK---RPHG--FDSRD 310 (493)
Q Consensus 236 L~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~---~p~g--~~siD 310 (493)
+... ....+++|.+++ ++|+|||+|+.........++++|+|++|.|||+..... .+.+ ...-.
T Consensus 160 ~~~~---------~~~~~EgP~i~k--~~G~yyl~ys~~~~~~~~Y~~~ya~s~~~~GP~~~~~~~~~~~~~~~~~g~gH 228 (275)
T cd09004 160 SEIT---------PKNYFEGPFMFK--RNGIYYLMWSEGGWTDPDYHVAYAMADSPLGPFERPGNIILQQDPGIATGPGH 228 (275)
T ss_pred eecc---------CCCceecceEEE--ECCEEEEEEECCCCCCCCceEEEEEcCCCCCCcccCCcEeeeCCCCCcccCCC
Confidence 3111 134689999996 899999999986433235689999999999999976421 1111 23456
Q ss_pred ceEEEcC-CCcEEEEEEec
Q 011114 311 MTIFKDD-DGVAYLVYSSE 328 (493)
Q Consensus 311 PsvF~Dd-DGk~YL~~g~~ 328 (493)
.++|+++ +|+.|++|...
T Consensus 229 ~~~~~~~~~~~~~~~yh~~ 247 (275)
T cd09004 229 HSVVNVPGTDEWYIVYHRR 247 (275)
T ss_pred CEEEEeCCCCeEEEEEeCC
Confidence 6788876 58899999864
No 40
>cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68. Members of the glycosyl hydrolase families 32, 43, 62 and 68 (GH32, GH43, GH62, GH68) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases, beta-xylanases, alpha-L-arabinases, and alpha-L-arabinofuranosidases, using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32
Probab=99.45 E-value=2.4e-12 Score=127.18 Aligned_cols=210 Identities=18% Similarity=0.213 Sum_probs=133.3
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCChhhhcCCCcccceeeecccCC-cceEEeecCCCCCCCCCCCcCCCCeEEee-
Q 011114 85 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDEN-SQLRHVFFPDMKTAIDPMKDNGNDSFYYY- 162 (493)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~v~~~~~~~-p~v~~~~~p~~~~aaDP~~~~~~~~~yi~- 162 (493)
..|..|+||++||..+.+++... +. +.+.. .+-.|||.|... + ......|+ +.+... ....+.+.
T Consensus 27 ~~~~~S~Dl~~W~~~~~~~~~~~-~~-~~~~~-~~~~wap~v~~~---~~g~~~l~yt-----~~~~~~--~~~~i~~a~ 93 (286)
T cd08772 27 IAHATSKDLVNWTDHPVALVWWA-RR-GGPKD-SGGIWAPSIVYI---ENGKFYLYYT-----DVSFTK--NQQTIGVAT 93 (286)
T ss_pred EEEEECCCcCcceECCccchhhc-cc-CCCCC-CCcEecceEEEc---CCCCEEEEEE-----eecCCC--CceeEEEEE
Confidence 57889999999999999986210 00 12222 457999988766 3 55344444 322200 11122221
Q ss_pred ---cCCceeCCCC-----------CcEEeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCC
Q 011114 163 ---PGRIWLDTEG-----------APIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWT 228 (493)
Q Consensus 163 ---pG~~w~dt~G-----------~pI~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvn 228 (493)
+...|.+... ....+.|+.|+.++ +|+|||+-..... .....|.+++|+|+.+
T Consensus 94 s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~v~~d~-dG~~y~~~~~~~~------------~~~~~i~~~~s~d~~~ 160 (286)
T cd08772 94 AEDGNGPWTDYIGGPVLPDNPPAADVSNFRDPFVFEDD-DGKWYLVFGSGDH------------HNFGGIFLYESDDDTT 160 (286)
T ss_pred cCCCCCCCccccccccccCCCCccccccccCCeEEEcC-CCCEEEEEccccC------------CCCCeEEEEEcCCCCC
Confidence 2233443221 12345789999875 4788886433210 0124688999999999
Q ss_pred CEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCC--CCcceEEEEEeCCCCCCceecccCC----
Q 011114 229 WKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN--YTKAAVGVAISDYPTGPFDYLYSKR---- 302 (493)
Q Consensus 229 Wt~~G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~--~~~~~IGVA~SdsP~GPf~~~~~~~---- 302 (493)
|+..+..+.... ......+++|.+++ .+|+|||+|+..... ....++++|+|+++.|||+......
T Consensus 161 w~~~~~~~~~~~------~~~~~~~E~P~~~~--~~g~~yL~~s~~~~~~~~~~y~~~~~~~~~~~g~~~~~~~~~~~~~ 232 (286)
T cd08772 161 WKKGSAELLISE------GEGGKQIEGPGLLK--KNGKYYLFYSINGTGRVDSTYSIGYARSESDTGPYVPKSDTSGGLS 232 (286)
T ss_pred cccccceeeEee------ccCCCceeccEEEE--ECCEEEEEEEcCCCcCCCCCcceEEEEccCCCCCcccCCCCCCccc
Confidence 998775421111 11345799999996 889999999987532 2467899999999999998753210
Q ss_pred -----CCCCCcCCceEEEcCCCcEEEEEEec
Q 011114 303 -----PHGFDSRDMTIFKDDDGVAYLVYSSE 328 (493)
Q Consensus 303 -----p~g~~siDPsvF~DdDGk~YL~~g~~ 328 (493)
..+.....+++|+|.+|+.||++...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 263 (286)
T cd08772 233 LTGGNDGGVGPYHAAAFNDAGGRVVLVYHAY 263 (286)
T ss_pred cccccCCCCCCCccEEEECCCCCEEEEEEec
Confidence 11235567789999899999998864
No 41
>PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure []. ; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 3UGG_A 3UGH_B 3UGF_B 1Y9M_A 1Y4W_A ....
Probab=99.45 E-value=6.5e-12 Score=128.35 Aligned_cols=201 Identities=16% Similarity=0.172 Sum_probs=136.1
Q ss_pred CCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceE
Q 011114 179 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKV 258 (493)
Q Consensus 179 gg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~V 258 (493)
+.++++. +|+|++|-++..... .| ....+.+.+|+||++|+..+.||.+.... +...+|..++
T Consensus 12 PnG~~~~--~G~yHlFyQ~~P~~~---~~------g~~~WgHa~S~Dlv~W~~~~~aL~P~~~~------d~~g~~SGs~ 74 (308)
T PF00251_consen 12 PNGLVYY--DGKYHLFYQYNPFGP---EW------GNMHWGHATSKDLVHWEHLPVALPPDEEY------DADGCFSGSA 74 (308)
T ss_dssp EEEEEEE--TTEEEEEEEEETTSS---SS-------SBEEEEEEESSSSSEEEEEEEE-SSSGG------GTTEEEEEEE
T ss_pred CccCeEe--CCEEEEEeccCCCCc---cc------ceeEEEEEECCCCCCceeCCceEcccccC------CcCccCcceE
Confidence 3467774 599999998865211 12 24568899999999999999999876421 3467999999
Q ss_pred EEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecc---cC---CCC--CCCcCCceEEEcCCCcEEEEEEecCC
Q 011114 259 IYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLY---SK---RPH--GFDSRDMTIFKDDDGVAYLVYSSEDN 330 (493)
Q Consensus 259 iyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~---~~---~p~--g~~siDPsvF~DdDGk~YL~~g~~~n 330 (493)
+. .+++++|||++...+. .+.+.+|+|.+....|+... +. .|. ....+||.||.+++|++||+.++...
T Consensus 75 ~~--~~~~~~~~YTg~~~~~-~~~q~~A~s~d~~~~w~k~~~~~pvi~~~p~~~~~~~RDP~v~~~~~~~~~m~~g~~~~ 151 (308)
T PF00251_consen 75 VV--DDDNLVLFYTGNNRDG-KQVQCLAYSTDDGITWTKYPQGNPVIPEPPPGDTTDFRDPKVFWREDGRWYMLLGAGRD 151 (308)
T ss_dssp EE--ETTCEEEEEEEEETTT-EEEEEEEEESSTTSSEEE-TTTCESBESSSTTSCTSEEEEEEEEECTTEEEEEEEEEET
T ss_pred EE--ECCEEEEEEeccCCCC-CeEEEEEEECCCCCceEEcCCCCcEEEecccCCCCccccCeEEEecCCEEEEEEecccc
Confidence 97 5568999999876542 68899999977777888743 11 122 35789999977778999999987532
Q ss_pred --CceEEEEcCCCCCCccccEEEe--e--cCceeeeeEEEEECCE--------EEEEEeCCC-CCCCCcEEEEEECC--C
Q 011114 331 --SELHIGPLTSDYLDVSNVVRRI--L--VGQHREAPALFKHLGT--------YYMVTSGCT-GWAPNEALVHAAES--I 393 (493)
Q Consensus 331 --~~i~iaeLs~D~~~~~g~~~~i--~--~g~~~EgP~i~K~~G~--------YYL~yS~~t-g~~~n~~v~~~Sds--p 393 (493)
+.+.+.+ |+|+.+++-.-... . .+...|+|.+|+.+++ ++|++|... ........+++++- .
T Consensus 152 ~~g~i~~y~-S~Dl~~W~~~~~l~~~~~~~g~~~ECPdlf~l~~~~~~~~~~~~vl~~s~~g~~~~~~~~~Y~vG~~d~~ 230 (308)
T PF00251_consen 152 GRGCILLYT-SDDLIHWEYLGPLFIPGDNGGGMWECPDLFPLDGKGDGTGKWVWVLIFSPQGIEDNGHGTYYMVGDFDFD 230 (308)
T ss_dssp TEEEEEEEE-ESSSSSEEEEEEESEEETTTSSEEEEEEEEEEEBTTSSSEEEEEEEEEEEESTTTTTTEEEEEEEEEETT
T ss_pred CcceEEEEE-cCCcccCceeCcccccccccccccccceEEEECCcccccceEEEEEEecccccccccccceEEeEEecCC
Confidence 2333333 68888885332111 1 2578999999998777 589998521 11222344445543 5
Q ss_pred CCCceeC
Q 011114 394 MGPWEDM 400 (493)
Q Consensus 394 ~GPwt~~ 400 (493)
.+.|+..
T Consensus 231 ~~~f~~~ 237 (308)
T PF00251_consen 231 GGTFTPD 237 (308)
T ss_dssp TTEEEES
T ss_pred CCeeeee
Confidence 6677654
No 42
>cd08988 GH43_ABN Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bla
Probab=99.41 E-value=1.1e-11 Score=124.85 Aligned_cols=202 Identities=18% Similarity=0.187 Sum_probs=118.5
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCChhhh-----cCCCcccceeeecccCCcceEEeecCCCCCCCCCCCcCCCCeE
Q 011114 85 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAK-----RRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSF 159 (493)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~p~~~~~~~p~~~~-----~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~~~~~~~~~ 159 (493)
.+...|+||++||..+.+|+++ |.|.+ ..+..|||.|... +.. +.||+ ++.+.... ...+
T Consensus 21 ~~v~~S~DL~~W~~~g~~~~~~-----~~~~~~~~~~~~~~~WAP~v~~~---~G~-yylyy----s~~~~~~~--~~~i 85 (279)
T cd08988 21 ITILSSKDLVNWTYSGSAFATE-----PTWKKRVPPSFDGHLWAPDIYQH---NGK-FYLYY----SVSAFGSN--TSAI 85 (279)
T ss_pred EEEEECCCcCCccccCccccCC-----CccccccCCCCCCCEecceEEEE---CCE-EEEEE----EeccCCCC--CceE
Confidence 4678899999999999999765 44432 1346899999887 554 66666 22221110 1111
Q ss_pred Ee----ecCCceeCCC---CCcE---------EeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEE-
Q 011114 160 YY----YPGRIWLDTE---GAPI---------QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS- 222 (493)
Q Consensus 160 yi----~pG~~w~dt~---G~pI---------~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~s- 222 (493)
.+ .|-.+|.+.. ..+| .+.|++++.|+ +|++||+-.... .+|.+.+
T Consensus 86 gva~s~~p~Gp~~~~~w~~~~~i~~~~~~~~~~~iDp~~f~Dd-DG~~Yl~~g~~~----------------~gi~~~eL 148 (279)
T cd08988 86 GLAVNKTIDGPSPDYGWEKGGVVISSDASDNYNAIDPAIIFDQ-HGQPWLSFGSFW----------------GGIKLFEL 148 (279)
T ss_pred EEEEcCCCCCCCcCcCccccCceEecCCCCCCCccCCceEEcC-CCCEEEEecccC----------------CCEEEEEE
Confidence 11 2333332211 0122 34688888875 688888632110 1233433
Q ss_pred eCCCCCCEEece--eccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC---CCCcceEEEEEeCCCCCCcee
Q 011114 223 SKDMWTWKNEGI--VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC---NYTKAAVGVAISDYPTGPFDY 297 (493)
Q Consensus 223 S~DLvnWt~~G~--vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~---~~~~~~IGVA~SdsP~GPf~~ 297 (493)
+.|+..-...+. .+.... .....+++|.+++ ++|+|||+++.... .....+++||+|++|.|||++
T Consensus 149 ~~d~~~~~~~~~~~~i~~~~-------~~~~~~Egp~i~k--~~g~YYl~~S~g~~~~~~~~~y~v~~arS~~~~GPy~~ 219 (279)
T cd08988 149 DKDTMKPAEPGELHSIAGRE-------RSSAAIEAPFILY--RGDYYYLFVSFGLCCRGGDSTYKIAVGRSKNITGPYLD 219 (279)
T ss_pred CcccCCccCCCcceEEeccC-------CCCCceEeeEEEE--cCCeEEEEEEcCcccCCCCCCeEEEEEEeCCCCCCCCC
Confidence 445443211121 111111 0135689999996 89999999987532 123468999999999999987
Q ss_pred cccCCC---CC----------CCcCCceEEEcCCCcEEEEEEec
Q 011114 298 LYSKRP---HG----------FDSRDMTIFKDDDGVAYLVYSSE 328 (493)
Q Consensus 298 ~~~~~p---~g----------~~siDPsvF~DdDGk~YL~~g~~ 328 (493)
...... .+ ...-..+||+|+ |+.||+|...
T Consensus 220 ~~~~p~~~~~~~~~~~~~~~~~g~GH~~v~~~~-g~~~~~yH~~ 262 (279)
T cd08988 220 KTGRSMLQGGGTILDKGNDRWVGPGHNSAYTDD-GKDYLVLHAY 262 (279)
T ss_pred CCCCCcccCCceEEEcCCCcEEcCCCCEEEeCC-CCEEEEEEEe
Confidence 422110 00 122467889876 8999999874
No 43
>cd08995 GH32_Aec43_like Glycosyl hydrolase family 32. This glycosyl hydrolase family 32 (GH32) includes characterized as well as uncharacterized proteins. GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH32 family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an a
Probab=99.40 E-value=1.9e-11 Score=122.44 Aligned_cols=202 Identities=12% Similarity=0.052 Sum_probs=126.4
Q ss_pred EecCccccchhhhhhccccCCCCCCCCCChhhhcCCCcccceeeecccCCcceEEeecCCCCCCCCCCCcCCCCeEEe--
Q 011114 84 ISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYY-- 161 (493)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~~~~~~~~~yi-- 161 (493)
...|..|+||++||+.+.+|+++ +.+.. .+..|+|-+... +..+...|| +...... ....+.+
T Consensus 31 ~wgha~S~Dlv~W~~~~~al~~~-----~~~~d-~~g~~sgs~~~~---~g~~~l~YT-----g~~~~~~-~~~~i~~A~ 95 (280)
T cd08995 31 PWSLLTTKDLVNYEDHGEAIPRG-----GDEDD-DDAIGTGSVIKG---EGTYHAFYT-----GHNLDGK-PKQVVMHAT 95 (280)
T ss_pred eEEEEEccCcCccEECcceecCC-----CCccc-ccCceEeEEEee---CCEEEEEEE-----EECCCCC-CcEEEEEEE
Confidence 36789999999999999999875 22222 346888866554 455455555 2111100 0111111
Q ss_pred -ecCCceeCCCCCcEE----------eeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCE
Q 011114 162 -YPGRIWLDTEGAPIQ----------AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWK 230 (493)
Q Consensus 162 -~pG~~w~dt~G~pI~----------ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt 230 (493)
..+..|....++||. ..||.|.+++.+|+|||+-....... . ......|.+++|+||.+|+
T Consensus 96 S~D~~~w~k~~~~pv~~~~~~~~~~~~rDP~Vf~~~~~g~y~m~~g~~~~~~-------~-~~~~g~i~~~~S~Dl~~W~ 167 (280)
T cd08995 96 SDDLITWTKDPEFILIADGEGYEKNDWRDPFVFWNEEEGCYWMLLATRLLDG-------P-YNRRGCIALFTSKDLKNWE 167 (280)
T ss_pred CCCCCccEECCCCeecCCccccccCCccCCcEEEcCCCCeEEEEEEeccCCC-------C-CCCCeEEEEEEeCCcCcce
Confidence 133445444444443 24789988766799999643221000 0 0012347889999999999
Q ss_pred EeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCCCCCCCcCC
Q 011114 231 NEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRD 310 (493)
Q Consensus 231 ~~G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~siD 310 (493)
..+.+.... ....+++|.++. .+|+|||+|+... ....+.+++++++.|||+........|....=
T Consensus 168 ~~~~~~~~~---------~~~~~E~P~l~~--~~g~~~L~~s~~~---~~~~~~Y~~~~~~~g~~~~~~~~~~dg~dfYA 233 (280)
T cd08995 168 YEEPFYAPG---------LYFMPECPDLFK--MGDWWYLVYSEFS---ENRKTHYRVSKSPFGPWRAPDDDTFDGRAFYA 233 (280)
T ss_pred ecCceecCC---------CcceeecceEEE--ECCEEEEEEEecc---CCCcEEEEEeCCCCCCeEcCCcCccCcccccc
Confidence 987654321 134689999995 8999999999865 23557788899999999754321122566777
Q ss_pred ceEEEcCCCcEEE
Q 011114 311 MTIFKDDDGVAYL 323 (493)
Q Consensus 311 PsvF~DdDGk~YL 323 (493)
|..|.|+ |+..|
T Consensus 234 ~~~~~~~-~r~i~ 245 (280)
T cd08995 234 AKTASDG-TRRFL 245 (280)
T ss_pred eeEEEeC-CeEEE
Confidence 8899887 76544
No 44
>cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.39 E-value=9.1e-12 Score=125.59 Aligned_cols=214 Identities=15% Similarity=0.153 Sum_probs=129.4
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCChhhhcCCCcccceeeecccCCcceEEeecCCCCCCCCCCCcCCCCeEEe---
Q 011114 85 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYY--- 161 (493)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~~~~~~~~~yi--- 161 (493)
+++..|+||++|+.++.+++++. +.|.. ...|||.|... +.. ..||+ ++.+.... +..+.+
T Consensus 25 i~~~~S~Dl~~W~~~~~~~~~~~----~~~~~--~~~waP~v~~~---~g~-yyl~y----s~~~~~~~--~~~i~~a~s 88 (294)
T cd08991 25 FAVYSSPDLVDWKLHGGALLALD----DDWGR--RGFWAPEVYYY---NGK-FYMYY----SANDRDEK--TEHIGVAVS 88 (294)
T ss_pred eEEEECCCCCCceECCccccCCC----CCccC--CcEEccEEEEE---CCE-EEEEE----EeccCCCC--cceEEEEEe
Confidence 45667999999999999887662 23664 58999998776 555 66666 33332211 112222
Q ss_pred -ecCCceeCCCCCcE----EeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEE-EEeCCCCCCEEecee
Q 011114 162 -YPGRIWLDTEGAPI----QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGC-YSSKDMWTWKNEGIV 235 (493)
Q Consensus 162 -~pG~~w~dt~G~pI----~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v-~sS~DLvnWt~~G~v 235 (493)
.|-.+|.+....++ .+.|+.++.++ +|++||+-........ ..++.+ --|.|+.+|......
T Consensus 89 ~~p~gp~~~~~~~~~~~~~~~iD~~vf~d~-dG~~yl~~~~~~~~~~-----------~~~i~~~~l~~d~~~~~~~~~~ 156 (294)
T cd08991 89 DSPLGPFRDIKKPPIDFEPKSIDAHPFIDD-DGKPYLYYSRNNYGNR-----------VSDIYGTELVDDKLSIKTELVG 156 (294)
T ss_pred CCCCCCCCcCCCCcccCCCcccCCceEECC-CCCEEEEEEecCCCCc-----------ccceEEEEEccceeeeccceee
Confidence 23345665433333 24578888775 5888887543221100 012322 237788887643221
Q ss_pred c--cCCCc-------ccc-cccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCC---
Q 011114 236 L--AAEET-------NET-HDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR--- 302 (493)
Q Consensus 236 L--~~~~~-------~~~-~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~--- 302 (493)
. +.... .|. ........+++|.+++ ++|+|||+|++........++++|+|++|+|||++.....
T Consensus 157 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~EgP~~~k--~~g~yyl~ys~~~~~~~~y~~~~a~s~~~~gp~~~~~~~pl~~ 234 (294)
T cd08991 157 PPIPVSAPGIDEIFERWRFGEGKDWRTNEGPTVLK--HNGRYYLTYSANHYENEDYGVGYATADSPLGPWTKYSNNPILR 234 (294)
T ss_pred ccccccccccccccccccccccccCceeeCcEEEE--ECCEEEEEEECCCCCCCCceEEEEEcCCCCCCcEecCCCceEe
Confidence 1 11100 000 0012345799999996 8999999999754322346899999999999999752111
Q ss_pred --CC--CCCcCCceEEEcCC-CcEEEEEEec
Q 011114 303 --PH--GFDSRDMTIFKDDD-GVAYLVYSSE 328 (493)
Q Consensus 303 --p~--g~~siDPsvF~DdD-Gk~YL~~g~~ 328 (493)
.. -......++|+++| |+.||+|.+.
T Consensus 235 ~~~~~~~~g~gh~~~~~~~~g~~~~~~yh~~ 265 (294)
T cd08991 235 RNGDKGVEGTGHNSVVKSPDGGELYIVYHAH 265 (294)
T ss_pred eCCCCceEeCCCCceEECCCCCEEEEEEeee
Confidence 01 12456778999988 7899999874
No 45
>cd08981 GH43_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.39 E-value=3.7e-11 Score=121.99 Aligned_cols=225 Identities=16% Similarity=0.096 Sum_probs=129.9
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCChhhhcCCCcccceeeecccCCcceEEeecCCCCCCCCCCCcCCCCeEEe---
Q 011114 85 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYY--- 161 (493)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~~~~~~~~~yi--- 161 (493)
+++..|+||++||..+.+++++. .-|.. ...|||.|.+. +.. ..||+ ++.+.... +-.+++
T Consensus 38 i~v~~S~DLv~W~~~g~~~~~~~----~~~~~--~~~WAP~v~~~---~G~-yyly~----s~~~~~~~--~~~~~va~s 101 (291)
T cd08981 38 FDVYKSKDLKDWEGPYPVFRPPD----DFWAD--DNFWAPEVHEY---KGR-YYMFA----TFHNPGGE--RRGTAILVS 101 (291)
T ss_pred EEEEECCChhcccccceeeccCC----CcCcc--ccccCCeeeee---CCE-EEEEE----EeccCCCc--eeeEEEEEC
Confidence 57788999999999999997652 13553 36899999876 666 44555 33322211 011222
Q ss_pred -ecCCceeCCCCCcE-----EeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEE-eCCCCCCEEece
Q 011114 162 -YPGRIWLDTEGAPI-----QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNEGI 234 (493)
Q Consensus 162 -~pG~~w~dt~G~pI-----~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLvnWt~~G~ 234 (493)
.|-.+|.+..+.++ .+.|+++..++ +|+.|++..+..... ....|.+.+ +.|+..-.....
T Consensus 102 ~~p~GP~~~~~~~~~~~~~~~~iDp~~f~Dd-DG~~Yl~~~~~~~~~-----------~~~~i~~~eL~~d~~~~~ge~~ 169 (291)
T cd08981 102 DSPEGPFVPHSDGPVTPEDWMCLDGTLYVDE-DGKPWMVFCHEWVQV-----------YDGTIEAVRLSPDLSRAIGEPV 169 (291)
T ss_pred CCCCCCCEeCCCCccCCCCCceEcCceEEcC-CCCEEEEEEeccccc-----------CCCCEEEEEeCCCccccCCceE
Confidence 35566776544333 34677887765 577776532210000 001233333 455543322222
Q ss_pred -eccCCCccccccc------CCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCC--CCCCceecccCCCCC
Q 011114 235 -VLAAEETNETHDL------YKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDY--PTGPFDYLYSKRPHG 305 (493)
Q Consensus 235 -vL~~~~~~~~~~~------~~~~~iWAP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~Sds--P~GPf~~~~~~~p~g 305 (493)
++...+.+|.... .....+++|.+++ .++|+|||+|++.. .....+++|.|++ |.|||++.... ...
T Consensus 170 ~i~~~~~~~w~~~~~~~~~~~~~~~~EgP~i~k-~~~G~YYl~yS~~~--~~~Y~~~~~rs~s~~~~GPy~~~~~p-i~~ 245 (291)
T cd08981 170 LLFRASEAPWVREFGLIGRGSGGYVTDGPFLYR-TKSGRLLMLWSSFS--DGGYAQGVARSESGTLLGPWVQEPEP-LIS 245 (291)
T ss_pred EEecCCcCCcccccccccccCCCeEeeCCEEEE-eCCCcEEEEEEecC--CCCEEEEEEEcCCCCccCCcEECCCc-ccC
Confidence 3332222232110 1234679999996 35899999998732 2357788888886 99999986521 111
Q ss_pred CCcCCceEEEcCCCcEEEEEEecCC---CceEEEEcCCC
Q 011114 306 FDSRDMTIFKDDDGVAYLVYSSEDN---SELHIGPLTSD 341 (493)
Q Consensus 306 ~~siDPsvF~DdDGk~YL~~g~~~n---~~i~iaeLs~D 341 (493)
...-..++|+++||+.|++|..... ....+++++.+
T Consensus 246 ~~~GH~s~v~~~~G~~~~vyH~~~~~~~~~~~~~~~~~~ 284 (291)
T cd08981 246 DDGGHGMLFRTFDGRLMLSLHTPNKHPDERPIFIEVDED 284 (291)
T ss_pred CCCCCCeeEEcCCCCEEEEEECCCCCCCeeeEEEEEeec
Confidence 2234577899999999999987531 12344555443
No 46
>cd09003 GH43_AXH_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), xylanase (endo-alpha-L-arabinanase) as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose
Probab=99.36 E-value=1.6e-11 Score=125.76 Aligned_cols=207 Identities=15% Similarity=0.117 Sum_probs=127.1
Q ss_pred EEecCccccchhhhhhccccCCCCCCCCCChhhhcCCCcccceeeecccCC---cceEEeecCCCCCCCCCCCcCCCCeE
Q 011114 83 HISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDEN---SQLRHVFFPDMKTAIDPMKDNGNDSF 159 (493)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~v~~~~~~~---p~v~~~~~p~~~~aaDP~~~~~~~~~ 159 (493)
.-+++..|.||++||.++.+++++ ..+.|+. ..|||.|.+. + --.+.||+ ++......| ..
T Consensus 46 ~~i~v~~S~DL~~W~~~g~v~~~~---~~~~w~~---~~WAP~v~~~---~~~~~gkyylyy----~~~~~~igv---a~ 109 (311)
T cd09003 46 NDITVISSDDMVNWTDHGEIFVPN---GIAKWAG---NSWAPSIAVK---KINGKGKFYLYF----ANGGGGIGV---LT 109 (311)
T ss_pred CcEEEEECCCCCCcEEcccccCcC---CCCCccc---ccCCCceEEe---ccCCCCEEEEEE----ecCCCeEEE---EE
Confidence 346677899999999999999743 2257764 6799998876 4 13467777 222111111 11
Q ss_pred EeecCCceeCCCCCcEE------------eeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEE-eCCC
Q 011114 160 YYYPGRIWLDTEGAPIQ------------AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDM 226 (493)
Q Consensus 160 yi~pG~~w~dt~G~pI~------------ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DL 226 (493)
.-.|-.+|.+..|+|+. +.|+.+..|+ +|+.|++-....... .+ .....+.+.+ ++|+
T Consensus 110 SdsP~GP~~~~~g~~l~~~~~~~~~~~~~~iDp~~f~Dd-DG~~Yl~~g~~~~~~---~~-----~~~~~i~i~~l~~D~ 180 (311)
T cd09003 110 ADSPVGPWTDPLGKPLITGSTPGCAGVVWLFDPAVFVDD-DGQGYLYFGGGVPGG---RW-----ANPNTARVIKLGDDM 180 (311)
T ss_pred cCCCCCCcccCCCCeeecCCCCCccCCccccCCCeEECC-CCCEEEEECCccCCC---cc-----ccCCCEEEEEeCCCc
Confidence 22366778876666553 3578888775 577777643211000 00 0112355554 4477
Q ss_pred CCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC-----CCCcceEEEEEeCCCCCCceecccC
Q 011114 227 WTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC-----NYTKAAVGVAISDYPTGPFDYLYSK 301 (493)
Q Consensus 227 vnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~-----~~~~~~IGVA~SdsP~GPf~~~~~~ 301 (493)
..-+.....+. ....+++|.+++ ++|+|||+|+.... .....++++|+|++|.|||+..+..
T Consensus 181 ~~~~g~~~~i~-----------~~~~~Egp~~~K--~~G~YYL~ys~~~~~~~~~~~~~y~v~y~~s~~~~GP~~~~g~i 247 (311)
T cd09003 181 ISVDGSAVTID-----------APYFFEASGLHK--INGTYYYSYCTNFGGRDPGKPPPGRIAYMTSKNPMGPFTYKGII 247 (311)
T ss_pred eeccCCceEcc-----------CCCceEeeeEEE--ECCEEEEEEeCCCCccCCCCCCceeEEEEEcCCCCCCcccCCEe
Confidence 65443222221 124689999996 99999999997532 1246789999999999999975422
Q ss_pred C--CC---C-CCcCCceEEEcCCCcEEEEEEec
Q 011114 302 R--PH---G-FDSRDMTIFKDDDGVAYLVYSSE 328 (493)
Q Consensus 302 ~--p~---g-~~siDPsvF~DdDGk~YL~~g~~ 328 (493)
. +. + ...-..++|.+ +|+.|++|...
T Consensus 248 l~~~~~~~~~~g~gH~s~~~~-~g~~y~vyH~~ 279 (311)
T cd09003 248 LKNPGAFFGNGGNNHHSIFEF-KGKWYIAYHAR 279 (311)
T ss_pred ccCCccccCCccCCCccEEEe-CCeEEEEEeCC
Confidence 1 11 1 23446678864 78999999854
No 47
>cd08998 GH43_ABN_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=99.35 E-value=6e-11 Score=119.60 Aligned_cols=207 Identities=18% Similarity=0.177 Sum_probs=119.3
Q ss_pred ecCccccchhhhhhccccCCCCCC-CCCChhhhcCCCcccceeeecccCCcceEEeecCCCCCCCCCCCcCCCCeEEe--
Q 011114 85 SHNPSFRELVEVEEENIQIPPPRG-KRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYY-- 161 (493)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~p~~~~-~~~p~~~~~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~~~~~~~~~yi-- 161 (493)
+++..|+||++||.++.+|+.+.. .....+.. .+..|||.|... +.. ..||+ ++.+... ....+.+
T Consensus 22 i~i~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~-~~~~wAP~v~~~---~g~-yyl~y----s~~~~~~--~~~~i~va~ 90 (288)
T cd08998 22 IAIAKSKDLGNWTYVGSVFPTGPPWWSSIDPGG-SGNLWAPDVIYL---NGK-YYLYY----SVSTFGS--NRSAIGLAT 90 (288)
T ss_pred eEEEECCCCCCcEECCccccCCCccccccccCC-CCCccCCeEEEE---CCE-EEEEE----EEEeCCC--CceEEEEEE
Confidence 567889999999999999977621 00011222 467999998776 555 55555 2222110 0111111
Q ss_pred e--c-CCceeCCC-------C-CcEEeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEe-CC---C
Q 011114 162 Y--P-GRIWLDTE-------G-APIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSS-KD---M 226 (493)
Q Consensus 162 ~--p-G~~w~dt~-------G-~pI~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS-~D---L 226 (493)
. | -.+|.+.. + ....+.|+.++.++ +|++||+-.... .++.+.+- .| .
T Consensus 91 s~~~~~gpw~~~~~v~~~~~~~~~~~~iDp~vf~d~-dG~~Yl~~~~~~----------------~~i~~~~l~~~~~~~ 153 (288)
T cd08998 91 SDTLPDGPWTDHGIVIESGPGRDDPNAIDPNVFYDE-DGKLWLSFGSFW----------------GGIFLVELDPKTGKP 153 (288)
T ss_pred eCCCCCCCCEEcceeeecCCCCCCcccccCCEEEcC-CCCEEEEeeecc----------------CCEEEEEeCcccCCc
Confidence 1 2 23454421 0 11235688888875 678888643211 12333332 22 1
Q ss_pred CCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCC---CCcceEEEEEeCCCCCCceecccCC-
Q 011114 227 WTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN---YTKAAVGVAISDYPTGPFDYLYSKR- 302 (493)
Q Consensus 227 vnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~---~~~~~IGVA~SdsP~GPf~~~~~~~- 302 (493)
+.|...+..+...+. ....+++|.+++ ++|+|||+++..... ....++++|+|++|.|||++.....
T Consensus 154 ~~~~~~~~~i~~~~~-------~~~~~Egp~~~k--~~g~YYl~~S~~~~~~~~~~~y~v~~~~s~~~~GP~~~~~g~~~ 224 (288)
T cd08998 154 LYPGGYGYNIAGRPR-------GHGAIEAPYIIY--RGGYYYLFVSYGGCCAGEDSTYNIRVGRSKSITGPYVDRNGNDM 224 (288)
T ss_pred cCCCCcceEEeccCC-------CCCceeeeEEEE--eCCEEEEEEEcchhcCCCCCceEEEEEEcCCCCCCcCCCCCCch
Confidence 223211222221110 134689999996 899999999864322 2356899999999999999642111
Q ss_pred -C-----------CC-CCcCCceEEEcCCCcEEEEEEec
Q 011114 303 -P-----------HG-FDSRDMTIFKDDDGVAYLVYSSE 328 (493)
Q Consensus 303 -p-----------~g-~~siDPsvF~DdDGk~YL~~g~~ 328 (493)
. .+ ......++|+++||+.|++|.+.
T Consensus 225 ~~~~~~~~~~~~~~~~~g~GH~~~~~~~~g~~~~~yH~~ 263 (288)
T cd08998 225 LNGGGTLYLLSSNGGYVGPGHNSVFTDDDGKDYLVYHYY 263 (288)
T ss_pred hhCCCcceeeccCCeEEcCCCCEEEECCCCCEEEEEEEE
Confidence 0 01 12357899999999999999875
No 48
>cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended subs
Probab=99.34 E-value=2e-11 Score=123.23 Aligned_cols=197 Identities=17% Similarity=0.129 Sum_probs=118.4
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCChhhhcCCCcccceeeecccCCcceEEeecCCCCCCCCCCCcCCCCeEEe---
Q 011114 85 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYY--- 161 (493)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~~~~~~~~~yi--- 161 (493)
++...|+||++||.++.++|.. .+..|||.|.+. +.. +.||+ ++.+... +.++++
T Consensus 40 i~i~~S~DL~~W~~~g~~~~~~-----------~~~~WAP~i~~~---~gk-yy~yy----s~~~~~~---~~~~~va~a 97 (280)
T cd09002 40 LVIWHSRDLVNWTPVGPALPEY-----------EGDVWAPDLCKY---DGR-YYIYF----PAIPEGG---NWTNMVIWA 97 (280)
T ss_pred EEEEECCCcCCceEccccccCC-----------CCCEEcCeeEEE---CCE-EEEEE----EeecCCC---CceEEEEEE
Confidence 4667799999999999888653 346899998776 665 66776 4433321 112222
Q ss_pred -ecCCceeCCCC-CcEEeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCC
Q 011114 162 -YPGRIWLDTEG-APIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAE 239 (493)
Q Consensus 162 -~pG~~w~dt~G-~pI~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~ 239 (493)
.|..+|.+.-. ..-.+.|++++.++ +|++||+-.. . ..+.+ +.|+..-+.....+...
T Consensus 98 d~p~Gpw~~~~~~~~~~~IDp~vf~Dd-dG~~Yl~~~~--~---------------~~~~l--~~d~~~~~g~~~~~~~~ 157 (280)
T cd09002 98 DSPEGPWSKPIDLKIGGCIDPGHVVDE-DGNRYLFLSG--G---------------DRVRL--TADGLSTDGKLEHVYDG 157 (280)
T ss_pred CCCCCCCcCCEecCCCCccCCceEEcC-CCCEEEEECC--e---------------eEEEE--CccccEecCcCEEEecC
Confidence 35556765321 11114688888765 6899987321 0 01112 33443332221111110
Q ss_pred -C--cccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCC--CcceEEEEEeCCCCCCceecccCC-----C-C-C-C
Q 011114 240 -E--TNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNY--TKAAVGVAISDYPTGPFDYLYSKR-----P-H-G-F 306 (493)
Q Consensus 240 -~--~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~~--~~~~IGVA~SdsP~GPf~~~~~~~-----p-~-g-~ 306 (493)
+ ..|. .....+++|.+++ ++|+|||+|+...... ....+++|+|++|.|||++....+ . . + .
T Consensus 158 ~~~~~~~~---~~~~~~Egp~~~k--~~g~YYl~yS~g~~~~~~~~~~v~~ars~s~~GP~~~~~~~pi~~~~~~~~~~~ 232 (280)
T cd09002 158 WRYPEDWV---VEGFALEGPKLKK--RNGYYYLTTAVGGTAGPPTGHMVVAARSKSVHGPWENSPYNPLVRTQSPQEPWW 232 (280)
T ss_pred cccccccc---cCCcccccceEEE--ECCEEEEEEccCCCCCCCCCEEEEEEECCCCCCCCccCCCCcEEecCCCCCCce
Confidence 0 0111 1233589999996 8999999998654321 135689999999999999753210 1 0 1 1
Q ss_pred CcCCceEEEcCCCcEEEEEEec
Q 011114 307 DSRDMTIFKDDDGVAYLVYSSE 328 (493)
Q Consensus 307 ~siDPsvF~DdDGk~YL~~g~~ 328 (493)
..-..+||.++||+.|++|.+.
T Consensus 233 g~GH~~i~~~~~g~~~~vyH~~ 254 (280)
T cd09002 233 SKGHATLVDGPDGQWWMVYHAY 254 (280)
T ss_pred eCCCCcEEECCCCCEEEEEEee
Confidence 3457789998899999999864
No 49
>cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=99.33 E-value=4.6e-11 Score=120.52 Aligned_cols=208 Identities=16% Similarity=0.147 Sum_probs=122.4
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCC--hhhhcCCCcccceeeecccCCcceEEeecCCCCCCCCCCCcCCCCeEEe-
Q 011114 85 SHNPSFRELVEVEEENIQIPPPRGKRSP--RAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYY- 161 (493)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~p~~~~~~~p--~~~~~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~~~~~~~~~yi- 161 (493)
+++..|+||++||+++.+|+.+. ..| .+ ...+..|||+|.+. +.. ..||+ ++.+.. ....+++
T Consensus 33 i~~~~S~Dl~~W~~~g~~~~~~~--~~~~~~~-~~~~~~WAP~v~~~---~g~-yy~yy----~~~~~~---~~~~~~v~ 98 (288)
T cd09000 33 VPIFHSKDLVNWELIGHALTRPS--QLDLDGL-PDSGGIWAPTIRYH---DGT-FYLIT----TNVDGM---KDGGNFIV 98 (288)
T ss_pred ceEEECCCcCCcEEcccccCCcc--cccccCC-CCCCceEcceEEEE---CCE-EEEEE----EecCCC---CCCceEEE
Confidence 56788999999999999997652 112 11 12457899999876 665 55555 333321 1112333
Q ss_pred ---ecCCceeCCCCCcEEeeCCceEEECCCCEEEEE-EEecCCCccccccccccccccCcEEEEEeCCCCCCEEece--e
Q 011114 162 ---YPGRIWLDTEGAPIQAHGGGILYDERSRTYFWY-GEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGI--V 235 (493)
Q Consensus 162 ---~pG~~w~dt~G~pI~ahgg~Ii~~~~~g~YY~y-gT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~--v 235 (493)
-|..+|.+.--..-.+.|+++..++ +|+.|++ +.......+ ....++.+.+.+ ...|+..+. .
T Consensus 99 ~s~~p~gpw~~~~~~~~~~iDp~vf~d~-dG~~Y~~~~~~~~~~~~---------~~~~~i~~~~l~-~~~~~~~~~~~~ 167 (288)
T cd09000 99 TADDPAGPWSDPVWLDSGGIDPSLFFDD-DGKVYLVGNGWDERRGY---------NGHGGIWLQEID-LETGKLLGEPKV 167 (288)
T ss_pred EeCCCCCCCcCCEecCCCccCCceeEcC-CCCEEEEecccCCcccc---------CCCCcEEEEEEc-cccCCCCCCcEE
Confidence 2444565421000034688888875 5676665 332111000 012346665543 333433221 1
Q ss_pred ccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccc--C-C----CCC--C
Q 011114 236 LAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYS--K-R----PHG--F 306 (493)
Q Consensus 236 L~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~--~-~----p~g--~ 306 (493)
+.... ....+++|.|++ ++|+|||+|+..... ....+++|+|++|+|||++... . . ..+ .
T Consensus 168 ~~~~~--------~~~~~Egp~v~k--~~g~YYl~ys~~~~~-~~~~v~~~~s~~~~Gp~~~~~~~~il~~~~~~~~~~~ 236 (288)
T cd09000 168 IWNGT--------GGRWPEGPHLYK--RDGWYYLLIAEGGTG-YGHSVTVARSRSITGPYEPAPNNPILTNRDLPDSPIQ 236 (288)
T ss_pred EEeCC--------CCCCcccCeEEE--ECCEEEEEEecCCCC-CCeEEEEEEeCCCCCCCccCCCCceEEcCCCCCCcce
Confidence 11110 124689999996 899999999865432 2368999999999999997421 1 0 011 2
Q ss_pred CcCCceEEEcCCCcEEEEEEec
Q 011114 307 DSRDMTIFKDDDGVAYLVYSSE 328 (493)
Q Consensus 307 ~siDPsvF~DdDGk~YL~~g~~ 328 (493)
..-..++|+++||+.|++|.+.
T Consensus 237 g~gH~~~~~~~dG~~~~~yH~~ 258 (288)
T cd09000 237 ATGHADLVQTPDGEWWAVFLAT 258 (288)
T ss_pred eCCccceEECCCCCEEEEEEEE
Confidence 3456789999899999999864
No 50
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=99.32 E-value=7.2e-12 Score=124.99 Aligned_cols=209 Identities=21% Similarity=0.276 Sum_probs=130.1
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCChhhhcCCCcccceeeecccCCcceEEeecCCCCCCCCCCCcCCCCeEEee--
Q 011114 85 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY-- 162 (493)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~~~~~~~~~yi~-- 162 (493)
+++..|+||++|+.++..++... .+.+.. .+..|||+|... +.. ..||+ + ..... .+..+++.
T Consensus 35 i~v~~S~DL~~W~~~g~~~~~~~---~~~~~~-~~~~WAP~i~~~---~g~-yy~y~----~-~~~~~--~~~~~~va~a 99 (286)
T PF04616_consen 35 IPVWSSKDLVNWTDAGNVLPPPP---DWDWAN-NGNIWAPEIHYI---NGK-YYMYY----S-DSGGD--AGSGIGVATA 99 (286)
T ss_dssp EEEEEESSSSSEEEEEECESSTT---TTSTTT-SETTEEEEEEEE---TTE-EEEEE----E-EESTS--TTEEEEEEEE
T ss_pred EEEEECCCCcccccceeeecccc---cccccc-cccccCCeEEEc---CCe-EEEEE----E-ccCCC--CCcceeEEEe
Confidence 56678899999999998887761 122222 223399998876 555 66777 2 00000 11123332
Q ss_pred --cCCceeCCCCCc---EEeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEE-eCCCCCCEEec-ee
Q 011114 163 --PGRIWLDTEGAP---IQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNEG-IV 235 (493)
Q Consensus 163 --pG~~w~dt~G~p---I~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLvnWt~~G-~v 235 (493)
|..+|.+....+ ..+.|++|+.+++ |++||+-...... .....|.+.+ +.|+..+.... .+
T Consensus 100 ~~~~Gp~~~~~~~~~~~~~~iD~~vf~d~d-G~~Yl~~~~~~~~-----------~~~~~i~~~~l~~d~~~~~~~~~~~ 167 (286)
T PF04616_consen 100 DSPDGPWTDPGKIPIPGGNSIDPSVFVDDD-GKYYLYYGSWDNG-----------DPGGGIYIAELDPDGTSLTGEPVVV 167 (286)
T ss_dssp SSTTS-EEEEEEEEEESSSSSSEEEEEETT-SEEEEEEEESTTT-----------SSEEEEEEEEEETTTSSEEEEECEE
T ss_pred CCcccccccccceeeccccccCceEEEecC-CCcEEeCcccCCC-----------ccceeEEeecccCccccccCccccc
Confidence 444555542221 1246888888764 7787775543211 0012344444 56677777666 33
Q ss_pred ccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCCC-------C-CCC
Q 011114 236 LAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRP-------H-GFD 307 (493)
Q Consensus 236 L~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p-------~-g~~ 307 (493)
+..... ......+++|.+++ ++|+|||+|+...... ..++++|+|++|.|||+......+ . ...
T Consensus 168 ~~~~~~-----~~~~~~~Egp~~~k--~~g~yYl~~s~~~~~~-~y~v~~~~s~~~~gp~~~~~~~~~~~~~~~~~~~~g 239 (286)
T PF04616_consen 168 IFPGDE-----GWDGGVVEGPFVFK--HGGKYYLFYSAGGTGS-PYQVGYARSDSPLGPWEWKKGNPILFSRDGENGVYG 239 (286)
T ss_dssp EEEESG-----SSTTTBEEEEEEEE--ETTEEEEEEEESGSST-TTEEEEEEESSTTSGGEETTTCBCEGTTBTTSSCEE
T ss_pred cccccc-----ccCCccccceEEEE--cCCCEEEEEeccCCCC-CceEEEeeccCCCCceeeccCCeEEEeeccCCcccc
Confidence 322221 12356899999996 8999999999765443 388999999999999997532211 1 134
Q ss_pred cCCceEEEcCCCcEEEEEEec
Q 011114 308 SRDMTIFKDDDGVAYLVYSSE 328 (493)
Q Consensus 308 siDPsvF~DdDGk~YL~~g~~ 328 (493)
.-..++|+++||+.||+|.+.
T Consensus 240 ~gH~~~~~~~~g~~~~~yh~~ 260 (286)
T PF04616_consen 240 PGHGSVFKDPDGRWYIVYHAR 260 (286)
T ss_dssp EEEEEEEEETTSEEEEEEEEE
T ss_pred CccCCEEECCCCCEEEEEeec
Confidence 567889999999999999875
No 51
>cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended
Probab=99.31 E-value=9e-11 Score=117.68 Aligned_cols=201 Identities=12% Similarity=0.067 Sum_probs=121.0
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCChhh----hcCCCcccceeeecccCCcceEEeecCCCCCCCCCCCcCCCCeEE
Q 011114 85 SHNPSFRELVEVEEENIQIPPPRGKRSPRAA----KRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFY 160 (493)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~p~~~~~~~p~~~----~~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~~~~~~~~~y 160 (493)
+++..|+||++||..+.+++.. |.+. ...+..|||.|.+. +.. ..||+ ++.+.. .+.+++
T Consensus 33 ~~~~~S~DL~~W~~~g~~~~~~-----~~~~~~~~~~~~~~WAP~v~~~---~G~-yy~yy----~~~~~~---~~~~i~ 96 (269)
T cd08989 33 VQIHHSTDLVNWHLIGHPLDRL-----EDLDMKGNPYSGGIWAPCLSYY---DGK-FWLIY----TAVKVW---KDCHNY 96 (269)
T ss_pred cEEEECCccCCCEEccccccCc-----cccccccCCCCCcEEcceEEEE---CCE-EEEEE----eccccC---CCceEE
Confidence 4567899999999999888764 2221 01356899999887 666 55555 232211 122343
Q ss_pred e----ecCCceeCCCCCcEEeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEE-eCCCCCCEEecee
Q 011114 161 Y----YPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNEGIV 235 (493)
Q Consensus 161 i----~pG~~w~dt~G~pI~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLvnWt~~G~v 235 (493)
+ .|..+|.+.-.....+.|++++.|+ +|+.||+... | .+|.+.+ +.|+..-......
T Consensus 97 va~sd~~~Gpw~~~~~~~~~~IDp~~f~D~-dG~~Yl~~~~---------~--------~~i~l~~l~~~~~~~~~~~~~ 158 (269)
T cd08989 97 LFTAEDITGPWSRPIFLNYGGFDPSLFHDD-DGKKYLINMG---------W--------SGIRLQEYSPAEKKLIGKPLN 158 (269)
T ss_pred EEEECCCCCCCcCCEECCCCcccCceEEcC-CCCEEEEecC---------C--------CcEEEEEEChhhCCCCCCcee
Confidence 3 3445676532222245788888875 6888887321 1 1344433 2232211100000
Q ss_pred ccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCC------CCC--CC
Q 011114 236 LAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR------PHG--FD 307 (493)
Q Consensus 236 L~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~------p~g--~~ 307 (493)
...+. ......+++|.+++ ++|+|||+++.....+ ...+++|+|++|.|||++....+ +.+ ..
T Consensus 159 ----~~~~~--~~~~~~~Egp~~~k--~~G~YYl~~S~~~~~~-~~~~~~~rs~~~~GP~~~~~~~pl~~~~~~~~~~~g 229 (269)
T cd08989 159 ----KVIIK--GTDDGLTEGPHLYK--INGKYYLTTAEGGTGY-IHEETIARSDKIHGPYEGRPDNPLVLWDTPGNPLQK 229 (269)
T ss_pred ----EEEec--CCCCCccccceEEE--ECCEEEEEEeeCCCCC-CeeEEEEEECCCCCCCCcCCCCcceeecCCCCCccc
Confidence 00000 01234689999996 8999999999764432 45789999999999999754311 111 23
Q ss_pred cCCceEEEcCCCcEEEEEEec
Q 011114 308 SRDMTIFKDDDGVAYLVYSSE 328 (493)
Q Consensus 308 siDPsvF~DdDGk~YL~~g~~ 328 (493)
.-..++|+++||+.|++|...
T Consensus 230 ~GH~s~v~~~~G~~~~~~h~~ 250 (269)
T cd08989 230 CGHASLVETPDGKWYLAHLTG 250 (269)
T ss_pred CCCcCeEECcCCCEEEEEEee
Confidence 457789999999999999875
No 52
>cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F. This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Ma
Probab=99.31 E-value=2.1e-10 Score=112.95 Aligned_cols=212 Identities=18% Similarity=0.166 Sum_probs=127.9
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCChhhhcCCCcccceeeecccCCcceEEeecCCCCCCCCCCCcCCCCeEEee--
Q 011114 85 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY-- 162 (493)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~~~~~~~~~yi~-- 162 (493)
+++..|.||++|+..+.+|+..... +.+.. .+..|||.|... +.. ..||+ ++.+.. .....+.+.
T Consensus 26 i~i~~S~Dl~~W~~~~~~~~~~~~~--~~~~~-~~~~waP~v~~~---~g~-yyl~y----~~~~~~--~~~~~i~~a~s 92 (271)
T cd08978 26 VQVWSSKDLVNWRYEGAVFVAWRGR--GEAKD-SGGLWAPEVIYY---EGK-YYLYY----SVSDFD--YNGSGIGVATS 92 (271)
T ss_pred EEEEECCccCCcEECCccccccccc--CCccc-CCceeCCeEEEE---CCE-EEEEE----EcccCC--CCcccEEEEEC
Confidence 4566789999999999988631101 12222 468999998876 444 55555 222110 011123332
Q ss_pred --cCCceeCC-----CCCcEEeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEecee
Q 011114 163 --PGRIWLDT-----EGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIV 235 (493)
Q Consensus 163 --pG~~w~dt-----~G~pI~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~v 235 (493)
|-+.|.+. ......+.|+.++.++ +|++||+-...... ....+|.+.++++...|.....+
T Consensus 93 ~d~~g~~~~~~~~~~~~~~~~~iDp~vf~d~-dg~~yl~~~~~~~~-----------~~~~~i~~~~l~~~~~~~~~~~~ 160 (271)
T cd08978 93 EDPTGPFEDKVIRPPTSNNGNSIDPTVFKDD-DGKYYLYYGSGDPG-----------AGFGGIYISELTDDLTKPTGPPV 160 (271)
T ss_pred CCCCCCccccccCcCccCCCCccCcceEEcC-CCCEEEEEecccCC-----------CCCCcEEEEEECcccccccCCce
Confidence 22223221 1111234678888875 48888875432110 11345778887775554332222
Q ss_pred ccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccC------C-C-CCCC
Q 011114 236 LAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSK------R-P-HGFD 307 (493)
Q Consensus 236 L~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~------~-p-~g~~ 307 (493)
+.... ......+++|.+++ ++|+|||+|+..........+++|+|++|.|||+..... . . ....
T Consensus 161 ~~~~~------~~~~~~~EgP~~~k--~~g~yyl~ys~~~~~~~~y~~~~~~s~~~~Gp~~~~~~~~~~~~~~~~~~~~~ 232 (271)
T cd08978 161 LSASS------GNNNAVTEGPTIFK--KNGYYYLTYSANGTGDYGYNIGYATSDSIDGPYVKKGGNAGLESDSAGFVGVG 232 (271)
T ss_pred eeeee------ccCCCceEccEEEE--ECCEEEEEEEeCCCCCCCceEEEEECCCCCCCcCcCCCCcceEeccCCCcccc
Confidence 21100 11245789999996 889999999987542246789999999999999975432 1 1 1235
Q ss_pred cCCceEEEcCCCcEEEEEEecC
Q 011114 308 SRDMTIFKDDDGVAYLVYSSED 329 (493)
Q Consensus 308 siDPsvF~DdDGk~YL~~g~~~ 329 (493)
....++|.+++|+.|++|.+..
T Consensus 233 ~gh~~~~~~~~g~~~~~yh~~~ 254 (271)
T cd08978 233 LGHGSVVRDKNGEWYLVYHAYN 254 (271)
T ss_pred CCCceEEECCCCCEEEEEEeec
Confidence 6788999998999999999753
No 53
>cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=99.29 E-value=5.3e-11 Score=119.33 Aligned_cols=200 Identities=15% Similarity=0.026 Sum_probs=119.8
Q ss_pred ecCccccchhhhhhccccCCCCCCCC-CChhhh---cCCCcccceeeecccCCcceEEeecCCCCCCCCCCCcCCCCeEE
Q 011114 85 SHNPSFRELVEVEEENIQIPPPRGKR-SPRAAK---RRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFY 160 (493)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~p~~~~~~-~p~~~~---~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~~~~~~~~~y 160 (493)
++...|.||++||..+.+++.+.... .+.|.. ..+..|||.|... +.. ..||+ ++.+....| .+.
T Consensus 36 i~v~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~WAP~v~~~---~gk-yy~yy----s~~~~~~~v---~~a 104 (269)
T cd09001 36 APILHSKDLVNWEIIGYVYDRLDDGDAYNLENGGNAYGKGQWAPSLRYH---NGT-FYVFF----CTNTGGTYI---YTA 104 (269)
T ss_pred CEEEEcccccCCeEcccccccccccccccccccCCCCCCCEECCceEEE---CCE-EEEEE----EecCCCeEE---EEc
Confidence 55678999999999998886541000 011211 1246899999887 555 66666 332221111 111
Q ss_pred eecCCceeCCCCCcEEeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEE-eCCCCCCEEece-eccC
Q 011114 161 YYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNEGI-VLAA 238 (493)
Q Consensus 161 i~pG~~w~dt~G~pI~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLvnWt~~G~-vL~~ 238 (493)
-.|-.+|.+.... ..+.|+++..|+ +|+.||+-.. .++.+.+ +.|+........ ++..
T Consensus 105 ~~p~Gpw~~~~~~-~~~iDp~~f~D~-dG~~Yl~~~~------------------~~i~~~~l~~d~~~~~~~~~~~~~~ 164 (269)
T cd09001 105 DDPEGPWTKTALD-GGYHDPSLLFDD-DGTAYLVYGG------------------GTIRLVELSPDLTGVGGKDQVIIDA 164 (269)
T ss_pred CCCCCCCcCCCcC-CCcccCceEEcC-CCCEEEEeCC------------------CcEEEEEECcccCCcCCCceEEEeC
Confidence 1355667664321 145688888775 5777776211 0233433 567766633222 2222
Q ss_pred CCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCC-CC--CCCcCCceEEE
Q 011114 239 EETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR-PH--GFDSRDMTIFK 315 (493)
Q Consensus 239 ~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~-p~--g~~siDPsvF~ 315 (493)
... ....++||.+++ ++|+|||+++... .....+++|+|++|.|||+...... +. .......++|.
T Consensus 165 ~~~-------~~~~~Egp~i~k--~~G~YYl~~S~~~--~~~~~~~~~~s~~~~GP~~~~~~~~~~~~~~~~~gh~~~~~ 233 (269)
T cd09001 165 GEE-------IGLGAEGSHLYK--INGYYYIFNIAWG--GGGRTQTCLRSKSLTGPYESKVVLEDGSTGGNGPHQGGIVD 233 (269)
T ss_pred CCc-------cccccccCeEEE--ECCEEEEEEecCC--CCCceEEEEEeCCCCCCcCCcceecCCCCCCCCCCCEEEEE
Confidence 111 135689999996 8999999999764 2245788999999999999753221 11 12234557888
Q ss_pred cCCCcEEEEEE
Q 011114 316 DDDGVAYLVYS 326 (493)
Q Consensus 316 DdDGk~YL~~g 326 (493)
++||+.|+++.
T Consensus 234 ~~~G~~~~~~~ 244 (269)
T cd09001 234 TPDGEWYFMLF 244 (269)
T ss_pred CCCCCEEEEEc
Confidence 88999887765
No 54
>cd08982 GH43_3 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.25 E-value=2.5e-10 Score=116.19 Aligned_cols=188 Identities=17% Similarity=0.206 Sum_probs=111.0
Q ss_pred CccccchhhhhhccccCCCCCCCCCChhhhcCCCcccceeeecccCCcceEEeecCCCCCCCCCCCcCCCCeEEe--ec-
Q 011114 87 NPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYY--YP- 163 (493)
Q Consensus 87 ~~~~~~l~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~~~~~~~~~yi--~p- 163 (493)
+..|+||++||..+.++. .+..|||+|... |..++..++ +.. ..++. .|
T Consensus 25 i~~S~DL~~W~~~g~~~~-------------~~~~WAP~i~~~---~g~~Y~~~~-------~~~-----~~v~~s~~p~ 76 (295)
T cd08982 25 YWHSSDLIDWDFIPTNSL-------------PDEGYAPAVFVY---DGTLYYTAS-------TYN-----SRIYKTADPL 76 (295)
T ss_pred eEECCCcCCceECCcccC-------------CCCcCcCEEEEE---CCEEEEEEe-------CCC-----ceEEEeCCCC
Confidence 467999999999997653 346899999887 554332222 211 12222 22
Q ss_pred CCceeCC-CCCcEEeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEE-eCCC---------------
Q 011114 164 GRIWLDT-EGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDM--------------- 226 (493)
Q Consensus 164 G~~w~dt-~G~pI~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DL--------------- 226 (493)
|..|.+. ......+.|++++.++ +|+.|++-..... .+|.+.+ +.|+
T Consensus 77 gp~w~~~~~~~~~~~IDp~vf~Dd-DGk~Yl~~g~~~~---------------~~i~~~eL~~d~~~~~g~~~~l~~~~~ 140 (295)
T cd08982 77 SGPWEEVDKSFPPGLADPALFIDD-DGRLYLYYGCSNN---------------YPLRGVEVDPDTFRPIGEPVELIPGNP 140 (295)
T ss_pred CCCccccccccCCCccCCceEECC-CCCEEEEEecCCC---------------CCeEEEEECcccCCccCcceEEEeCCC
Confidence 2235442 1122345788888875 5777776321110 1122222 1222
Q ss_pred --CCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCC--
Q 011114 227 --WTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR-- 302 (493)
Q Consensus 227 --vnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~-- 302 (493)
..|+..+..... ......+++|.+++ ++|+|||+|++........+++||+|++|.|||+......
T Consensus 141 ~~~~We~~g~~~~~--------~~~~~~~EGP~i~k--~~G~YYL~yS~~~~~~~~Y~v~~a~s~~p~GP~~~~~~~pil 210 (295)
T cd08982 141 DKHGWERFGENNDN--------PDKTPWMEGAWMTK--HNGKYYLQYAAPGTEFNTYADGVYVSDSPLGPFTYQPHNPFS 210 (295)
T ss_pred CCcCeEecCccccc--------ccCCccccccEEEE--ECCEEEEEEeCCCcccCcEeEEEEEeCCCCCCCCcCCCCccc
Confidence 233332221000 00134689999996 8999999999765433456899999999999999754211
Q ss_pred --CCC--CCcCCceEEEcCCCcEEEEEEec
Q 011114 303 --PHG--FDSRDMTIFKDDDGVAYLVYSSE 328 (493)
Q Consensus 303 --p~g--~~siDPsvF~DdDGk~YL~~g~~ 328 (493)
+.+ ....+.++|++.||+.|++|..+
T Consensus 211 ~~~~~~~~g~GH~s~v~~~~G~~~~~yh~~ 240 (295)
T cd08982 211 YKPGGFITGAGHGSTFQDKYGNYWHVGTMT 240 (295)
T ss_pred cCCCCeEecCCcccEEECCCCCEEEEEEEE
Confidence 111 13457789999999999998654
No 55
>cd08985 GH43_6 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.20 E-value=5.3e-10 Score=112.00 Aligned_cols=208 Identities=13% Similarity=0.078 Sum_probs=125.2
Q ss_pred eEEecCccccchhhhhhccccCCCCCCCCCChhhhcCCCcccceeeecccCCcceEEeecCCCCCCCCCCCc--CCCCeE
Q 011114 82 LHISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKD--NGNDSF 159 (493)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~~~--~~~~~~ 159 (493)
..-.++..|+||++||.++.+|++... -.+.|. ....|||.|...- .+.. +.||+ .+.++... ..+-++
T Consensus 29 ~~gi~~~sS~DLvnW~~~g~vl~~~~~-~~~~~~--~~~~waP~v~y~~-~~g~-Y~m~~----~~~~~~~~~~~igvA~ 99 (265)
T cd08985 29 FGGVSCYSSTDLVNWTFEGLALTPEED-SADLGP--GRIIERPKVIYNA-KTGK-YVMWM----HIDSSDYSDARVGVAT 99 (265)
T ss_pred cccEEEEECCCCccceECceecccccc-cccccc--CcEEECCeEEEeC-CCCE-EEEEE----EeCCCCCcceeEEEEE
Confidence 344678889999999999999987621 113444 3478999876642 1333 77777 32221110 011111
Q ss_pred EeecCCceeCCCCC---cEEeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEE-eCCCCCCEEecee
Q 011114 160 YYYPGRIWLDTEGA---PIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYS-SKDMWTWKNEGIV 235 (493)
Q Consensus 160 yi~pG~~w~dt~G~---pI~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~s-S~DLvnWt~~G~v 235 (493)
.-.|-.+|.+.... ...+.|+++..|+ +|++||+-.... ..++.+.+ ++|+..+......
T Consensus 100 Sd~p~Gpf~~~~~~~~~~~~~~Dp~vf~Dd-DG~~Yl~~~~~~---------------~~~i~i~~L~~d~~~~~~~~~~ 163 (265)
T cd08985 100 SDTPTGPYTYLGSFRPLGYQSRDFGLFVDD-DGTAYLLYSDRD---------------NSDLYIYRLTDDYLSVTGEVTT 163 (265)
T ss_pred eCCCCCCCEECCccCCCCCCccCCceEEcC-CCCEEEEEecCC---------------CCceEEEEeCCCcccccceEEE
Confidence 22355667653211 1234688888875 567777643221 12345544 4688877654332
Q ss_pred ccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCCCCCCCcCC---ce
Q 011114 236 LAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRD---MT 312 (493)
Q Consensus 236 L~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~siD---Ps 312 (493)
+. ....++||.+++ ++|+|||+++... .+....+.+|+|++|.|||+..+...+.+..+.+ ..
T Consensus 164 ~~-----------~~~~~EaP~i~K--~~g~YYL~~S~~t-~~~~~~~~y~~s~s~~GP~~~~~~~~~~~~~t~~sq~~~ 229 (265)
T cd08985 164 VF-----------VGAGREAPAIFK--RNGKYYLLTSGLT-GWNPNDARYATATSILGPWTDLGNPGPGGSTTYGSQTTF 229 (265)
T ss_pred cc-----------CCCccccceEEE--ECCEEEEEEccCC-CccCCceEEEEecCCCCCccccCcCCCCCCcEECCCcce
Confidence 11 235689999996 8999999999752 2334568999999999999987654333333333 33
Q ss_pred EEEcC--CCcEEEEEEec
Q 011114 313 IFKDD--DGVAYLVYSSE 328 (493)
Q Consensus 313 vF~Dd--DGk~YL~~g~~ 328 (493)
|+.-. .++.||+++..
T Consensus 230 v~~~~g~~~~~~~~~~dr 247 (265)
T cd08985 230 VLPVPGSKQTTYIYMGDR 247 (265)
T ss_pred EEEeCCCCCCEEEEEEcc
Confidence 44322 23789998864
No 56
>cd08984 GH43_5 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.09 E-value=8.8e-09 Score=104.48 Aligned_cols=169 Identities=14% Similarity=0.135 Sum_probs=110.7
Q ss_pred eCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeece
Q 011114 178 HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPK 257 (493)
Q Consensus 178 hgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~ 257 (493)
..|.|++. +|+||||-+...+... .+ .....|.+++|+||++|+..+.++.. ...+.-|.
T Consensus 80 WAP~v~~~--~G~y~myys~~~~~~~--~~-----~~~~~i~~a~S~Dl~~w~~~~~~~~~-----------~~~~iD~~ 139 (294)
T cd08984 80 WAPEVVWH--GGVYHMYVTYIPGVPP--DW-----GGPRRIVHYTSPNLWDWTFVGRVDLD-----------SDRVIDAC 139 (294)
T ss_pred eCceEEEE--CCEEEEEEEecCCCCc--cc-----CCCcEEEEEECCCcCcceECCccccC-----------CCCcEEeE
Confidence 45788886 4999999886432110 00 11346889999999999998865311 12356788
Q ss_pred EEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCCCCCCCcCCceEEEcCCCcEEEEEEecCCCceEEEE
Q 011114 258 VIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGP 337 (493)
Q Consensus 258 Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~siDPsvF~DdDGk~YL~~g~~~n~~i~iae 337 (493)
|+.+ .+|+|||||+... ....+++|.|+++ ..|+......+ ....-+|.||+. +|++||++... .++.+.+
T Consensus 140 vf~~-~dg~~yl~y~~~~---~~~~~~~a~s~D~-~~w~~~~~~i~-~~~~EgP~v~k~-~g~yym~~~~~--~g~~~~~ 210 (294)
T cd08984 140 VFKL-PDGRWRMWYKDER---RGSTTYAADSEDL-YHWTVEGPVLG-DRPHEGPNVFRW-KGYYWMIIDEW--KGLGVYR 210 (294)
T ss_pred EEEe-CCCEEEEEEECCC---CCeEEEEEECCCC-CEEEeCCcccc-CCCCCCCCeeEE-CCEEEEEEcCC--ceEEEEE
Confidence 8863 4699999997542 2356789999986 45775432211 223468999985 78999998643 2344444
Q ss_pred cCCCCCCccccEEEeec-------CceeeeeEEEEECCEEEEEEeC
Q 011114 338 LTSDYLDVSNVVRRILV-------GQHREAPALFKHLGTYYMVTSG 376 (493)
Q Consensus 338 Ls~D~~~~~g~~~~i~~-------g~~~EgP~i~K~~G~YYL~yS~ 376 (493)
++|+..|+-....+.. +...+-|.|++.+|+.||+|-.
T Consensus 211 -S~D~~~W~~~~~~l~~~~~~~~~~~~~~H~~i~~~~~~~y~~Yh~ 255 (294)
T cd08984 211 -SKDAENWERQGGILLKPGTRPDDGAKGRHADVVVTGDRAYIFYFT 255 (294)
T ss_pred -CCChhhcEECCeeeccCCCCccccccccCCcEEEeCCEEEEEEEe
Confidence 5677676432222221 2245669999999999999974
No 57
>cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins. This subfamily is glycosyl hydrolase family 43 (GH43)-like and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.08 E-value=2.6e-09 Score=110.82 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=55.0
Q ss_pred CCCeeeeceEEEEccCCEEEEEEEEeCCC------CCcceEEEEEeCCCCCCceecccCCCCCCCcCCceEEEcCCCcEE
Q 011114 249 KLNVLERPKVIYNDRTGKYVMWMHIDDCN------YTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAY 322 (493)
Q Consensus 249 ~~~~iWAP~Viyn~~~GkYylyfs~~~~~------~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~siDPsvF~DdDGk~Y 322 (493)
+...+++|.|++ .+|+|||||+++..+ ....+||||+|++|+|||+..... |.-...-..+|+.+.||-++
T Consensus 188 D~~~v~~P~v~~--~~g~yyL~Y~G~~~g~~~~~~~~~~~iGvAvAdsP~GPf~r~~~n-Pi~~~~~~~~~~~~~~~~~~ 264 (349)
T cd08992 188 DSHKVHDPCLFP--FNGKFYLYYKGEQMGEEMTMGGRETKWGVAIADDPEGPYVKSPYN-PITNSGHETCVWQYKGGIAA 264 (349)
T ss_pred ccCceECCEEEE--ECCEEEEEEEccccCcccccCCCCceEEEEEECCCCCCCEeCCCC-cccCCCCceEEEecCCceEE
Confidence 456799999996 799999999986421 135789999999999999975322 21111223578888877777
Q ss_pred EEEEe
Q 011114 323 LVYSS 327 (493)
Q Consensus 323 L~~g~ 327 (493)
|+-..
T Consensus 265 ~~~~d 269 (349)
T cd08992 265 MLTTD 269 (349)
T ss_pred EEecc
Confidence 77654
No 58
>cd08980 GH43_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.06 E-value=8.5e-09 Score=103.98 Aligned_cols=213 Identities=15% Similarity=0.188 Sum_probs=122.1
Q ss_pred ecCccccchhhhhhccccCC-CCCCCCCChhhhcCCCcccceeeecccCCcceEEeecCCCCCCCCCCCcCCCCeEEee-
Q 011114 85 SHNPSFRELVEVEEENIQIP-PPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY- 162 (493)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~p-~~~~~~~p~~~~~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~~~~~~~~~yi~- 162 (493)
++...|+||++|+.++..++ .+ ....|. .+..|||.|... +-. +.||+ ++.+... .....+++.
T Consensus 23 ~~i~~S~dl~~w~~~~~~~~~~~---~~~~~~--~~~~WAP~i~~~---~g~-yylyy----s~~~~~~-~~~~~~~v~~ 88 (288)
T cd08980 23 IELRRSDTLAGLATAESKVVWTP---PDSGPY--SGNLWAPELHYI---DGK-WYIYF----AAGDGGG-NANHRMYVLE 88 (288)
T ss_pred EEEEecCChhHhhcCCcEEEecC---CCCCCc--cccEECceEEEE---CCE-EEEEE----EccCCCC-CcceeEEEEE
Confidence 56788999999999864332 12 111122 457899999766 555 66666 2222210 011122221
Q ss_pred ------cCCceeCCCCCc-----EEeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEE
Q 011114 163 ------PGRIWLDTEGAP-----IQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKN 231 (493)
Q Consensus 163 ------pG~~w~dt~G~p-----I~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~ 231 (493)
|-.+|.+. |.. ..+.|++++.++ |++|++-...... .....++.+.+.+|...+..
T Consensus 89 a~~~~~~~Gpw~~~-~~~~~~~~~~~iDp~~~~dd--G~~Yl~~~~~~~~----------~~~~~~i~~~~l~~~~~~~g 155 (288)
T cd08980 89 NAGADPPTGPWTFK-GRLADPTDRWAIDGTVFEHN--GQLYFVWSGWEGR----------TNGNQNLYIAKMSNPWTLTG 155 (288)
T ss_pred eCCCCCCCCCceEe-eEeccCCCCeeeeeEEEEEC--CEEEEEEEccCCC----------CCCCccEEEEECCCCCccCC
Confidence 34556653 211 134678888764 8888775432210 00123466666666545553
Q ss_pred eceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCC---CCC--ceecc-cC---C
Q 011114 232 EGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYP---TGP--FDYLY-SK---R 302 (493)
Q Consensus 232 ~G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP---~GP--f~~~~-~~---~ 302 (493)
...++...+..|.. .....+++|.+++ ++|+|||+|++........++++|+|+++ .|| |+... .. .
T Consensus 156 ~~~~i~~p~~~we~--~~~~~~EgP~~~k--~~G~yYl~yS~~~~~~~~Y~v~~a~~~~~~~~~~~~~~~~~~~pil~~~ 231 (288)
T cd08980 156 PRVLISRPEYDWER--QGPGVNEGPAALK--RNGKVFLTYSASGSWTPDYCLGLLTADGGADLLDPASWTKSPTPVFQSS 231 (288)
T ss_pred cceEecCCCCCcee--cCceeeECcEEEE--ECCEEEEEEECCCCCCCCCEEEEEEEcCCCCCCChhhCcCCCCCceecC
Confidence 34444433322211 0124689999996 88999999998654234678999998754 555 44322 11 0
Q ss_pred C--CCCCcCCceEEEcCCCc-EEEEEEec
Q 011114 303 P--HGFDSRDMTIFKDDDGV-AYLVYSSE 328 (493)
Q Consensus 303 p--~g~~siDPsvF~DdDGk-~YL~~g~~ 328 (493)
. .-......++|+|+||+ .||+|.+.
T Consensus 232 ~~~~~~g~GH~~iv~~~~G~~~~~~yH~~ 260 (288)
T cd08980 232 PENGVYGPGHNSFTKSPDGTEDWIVYHAR 260 (288)
T ss_pred CCCccCcCCccceEECCCCCEEEEEEccc
Confidence 1 11235688899999998 99999875
No 59
>COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]
Probab=99.03 E-value=8.5e-09 Score=110.83 Aligned_cols=175 Identities=19% Similarity=0.267 Sum_probs=122.6
Q ss_pred CceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEE
Q 011114 180 GGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVI 259 (493)
Q Consensus 180 g~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~Vi 259 (493)
.++++.+ |+|++|-++..- .+.| ....|..+.|+||++|+..+.+|.+.+. .+.+++++.+++
T Consensus 45 NG~iy~~--G~yHlFYQ~~P~---~~~~------g~~~WgHa~S~Dlv~W~~~piaL~Pd~~------~d~~g~ySGSAV 107 (486)
T COG1621 45 NGLIYFD--GKYHLFYQYNPF---GAAH------GPKHWGHAVSKDLVHWEHLPIALAPDDD------YDSHGCYSGSAV 107 (486)
T ss_pred CceeEEC--CEEEEEEecCCC---CCCC------CCceeeeeccCCcccceECCceecCCCc------cccCCceeeeEE
Confidence 3556653 899999998651 1112 3567899999999999999999987653 246789999999
Q ss_pred EEccCCEEEEEEEEeC--CCC-CcceEEEEEeCCCCCCceec-cc---CCCCC--CCcCCceEEEcCCCcEEEEEEecCC
Q 011114 260 YNDRTGKYVMWMHIDD--CNY-TKAAVGVAISDYPTGPFDYL-YS---KRPHG--FDSRDMTIFKDDDGVAYLVYSSEDN 330 (493)
Q Consensus 260 yn~~~GkYylyfs~~~--~~~-~~~~IGVA~SdsP~GPf~~~-~~---~~p~g--~~siDPsvF~DdDGk~YL~~g~~~n 330 (493)
- .+|+-.++|+..- .+. .....++|.|++ .|.|+.. +. ..|.+ ..++||-||.+++|+.||+.++...
T Consensus 108 ~--~~~~l~lfytg~v~~~~~~r~~~Q~iA~s~d-g~~f~K~~~~~i~~~p~~~t~hFRDPKv~w~~~~~~~~mlgAq~~ 184 (486)
T COG1621 108 V--DDGNLSLFYTGNVRDSNGIRQQTQCIAYSED-GGTFEKYSGNPIIDQPEGYTPHFRDPKVVWDEGGKWWMMLGAQGE 184 (486)
T ss_pred E--eCCcEEEEEccceeccCCcceeEEEEEEEcC-CCceEeccCCceecCCCcccccCCCCcccccCCCcEEEEEEEecC
Confidence 5 5566666665442 222 345678999998 6778873 22 13445 4799999999999999999998643
Q ss_pred ---CceEEEEcCCCCCCcc--ccEEEe--ecCceeeeeEEEEECCEEEEEEe
Q 011114 331 ---SELHIGPLTSDYLDVS--NVVRRI--LVGQHREAPALFKHLGTYYMVTS 375 (493)
Q Consensus 331 ---~~i~iaeLs~D~~~~~--g~~~~i--~~g~~~EgP~i~K~~G~YYL~yS 375 (493)
+.+.+.+ |+|+.+|. |+...- ..+.+.|+|-+|.-++.=.++++
T Consensus 185 ~~~g~i~lY~-S~DL~~W~~~g~~~~~~~~~gym~ECPdlf~l~~~~~~~~~ 235 (486)
T COG1621 185 DLKGTILLYE-SDDLKNWQFTGEFGLEQGGLGYMWECPDLFELDGEDVLLFW 235 (486)
T ss_pred CCCceEEEEe-CCCccCcEEEEeeccCCCceeeEEECCCeEEecCcCceEEc
Confidence 2455555 67777764 433211 12457999999999887666654
No 60
>cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases. Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catal
Probab=99.01 E-value=1.5e-08 Score=102.30 Aligned_cols=203 Identities=17% Similarity=0.216 Sum_probs=125.6
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCChhhhcCCCcccceeeecccCCcceEEeecCCCCCCCCCC--CcCCCCeEEee
Q 011114 85 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPM--KDNGNDSFYYY 162 (493)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~--~~~~~~~~yi~ 162 (493)
.-|..|+||+||++.+.+|+|. .... .+..|++.+..- ++..+...|| +.... .....-.+.+.
T Consensus 34 wgha~S~Dlv~W~~~~~al~p~------~~~d-~~g~~sGsav~~--~~g~~~~~YT-----g~~~~~~~~~~~~~lA~S 99 (298)
T cd08996 34 WGHATSKDLVHWEHLPVALAPD------DPYD-SGGCFSGSAVVD--DNGKLVLFYT-----GNVKLDGGRRQTQCLAYS 99 (298)
T ss_pred EEEEEecCccceeECCcccCCC------Cccc-CCeEEeCeEEEc--CCCcEEEEEe-----ceeCCCCCceEEEEEEEE
Confidence 4579999999999999999763 2222 346777755443 2245555666 22110 11111223332
Q ss_pred --cCCceeCCCCCcEE---------eeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEE
Q 011114 163 --PGRIWLDTEGAPIQ---------AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKN 231 (493)
Q Consensus 163 --pG~~w~dt~G~pI~---------ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~ 231 (493)
+|..|.....+++. .+||.|.+++ |+|||+-..... .....+.+|+|+||.+|+.
T Consensus 100 ~ddg~~w~k~~~~~~~~~~~~~~~~~RDP~V~~~~--g~~~m~~g~~~~------------~~~~~i~ly~S~Dl~~W~~ 165 (298)
T cd08996 100 TDDGRTFTKYEGNPVIPPPDGYTTHFRDPKVFWHD--GKWYMVLGAGTE------------DGTGRILLYRSDDLKNWEY 165 (298)
T ss_pred cCCCCEEEECCCCceEcCCCCCCCcccCCeEEeEC--CEEEEEEEEEec------------CCCcEEEEEECCCCCCCEE
Confidence 57888877777764 2689999875 899987654211 0124588999999999999
Q ss_pred eceeccCCCcccccccCCCCeeeeceEEEEccC--CEEEEEEEEeCCCC--CcceEEEEEeCCCCCCceecc-cC--CCC
Q 011114 232 EGIVLAAEETNETHDLYKLNVLERPKVIYNDRT--GKYVMWMHIDDCNY--TKAAVGVAISDYPTGPFDYLY-SK--RPH 304 (493)
Q Consensus 232 ~G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~--GkYylyfs~~~~~~--~~~~IGVA~SdsP~GPf~~~~-~~--~p~ 304 (493)
.+.+...... .+...++|+++. .+ ++|||+|+...... ......+++.+-..+.|+... .. .-.
T Consensus 166 ~~~~~~~~~~-------~~~~~EcP~l~~--l~~~~k~vL~~s~~~~~~~~~~~~~~y~~G~~~~~~~~~~~~~~~~lD~ 236 (298)
T cd08996 166 LGELLTSLGD-------FGYMWECPDLFP--LDVEGKWVLIFSPQGLEPEGNGSGTGYLVGDFDGTTFTFDHTEFGELDY 236 (298)
T ss_pred cceecccCCC-------ccceEeCCcEEE--ECCCCeEEEEECCCCCCCCCCccceEEEEEEEECCCCeEecCCceEecC
Confidence 8876421111 245678999995 77 99999999875321 123455556544445565421 11 112
Q ss_pred CCCcCCceEEEcCCCcEEEE
Q 011114 305 GFDSRDMTIFKDDDGVAYLV 324 (493)
Q Consensus 305 g~~siDPsvF~DdDGk~YL~ 324 (493)
|....=|..|.|++|+..|+
T Consensus 237 G~dfYA~q~~~~~~~r~i~~ 256 (298)
T cd08996 237 GFDFYAPQTFVDPDGRRILI 256 (298)
T ss_pred CCCeEeCceeeCCCCCEEEE
Confidence 45566678888877775544
No 61
>cd08983 GH43_4 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.99 E-value=4.2e-08 Score=98.97 Aligned_cols=178 Identities=20% Similarity=0.218 Sum_probs=108.8
Q ss_pred eeeeceEEEEccCCEEEEEEEEeCC---CCCcceEEEEEeCCCCCCceecccCC---CCCCCcCCceEEEcC-CCcEEEE
Q 011114 252 VLERPKVIYNDRTGKYVMWMHIDDC---NYTKAAVGVAISDYPTGPFDYLYSKR---PHGFDSRDMTIFKDD-DGVAYLV 324 (493)
Q Consensus 252 ~iWAP~Viyn~~~GkYylyfs~~~~---~~~~~~IGVA~SdsP~GPf~~~~~~~---p~g~~siDPsvF~Dd-DGk~YL~ 324 (493)
.+=-|.|++++.+|+|||+++.... ......|.++.|++. -.|+..+... +.....-.|.+|.|+ +|++||+
T Consensus 17 ~~rDP~I~r~~~~g~yy~~~T~~~~~~~~~~~~~i~i~~S~DL-v~W~~~~~~~~~~~~~~~~WAPev~~d~~~g~y~~~ 95 (276)
T cd08983 17 GLRDPFILRSHEGGKYYMIATDLKITGQTNGSQYIVVWESTDL-VNWTFQRLVKVNPPNAGNTWAPEAFWDAERGQYVVY 95 (276)
T ss_pred CccCCeEEEcCCCCEEEEEEEecCcCCcccCCCeEEEEECCcc-cCCcccceeecCCCCcCcEeCccceEcCCCCeEEEE
Confidence 4556999985468999999987531 113467999999986 4788654321 112234589999985 8999999
Q ss_pred EEecCC------CceEEEEcC-CCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEECCCCCCc
Q 011114 325 YSSEDN------SELHIGPLT-SDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPW 397 (493)
Q Consensus 325 ~g~~~n------~~i~iaeLs-~D~~~~~g~~~~i~~g~~~EgP~i~K~~G~YYL~yS~~tg~~~n~~v~~~Sdsp~GPw 397 (493)
|+.... ....+.-.+ .|..+++.+..-+..+...=.+.|++.+|+|||+|..... .....++|+++.|||
T Consensus 96 ~s~~~~~~~~~~~~~~i~~~tt~Df~tft~p~~~~~~~~~~ID~~v~~~~g~~Yl~~k~~~~---~~i~~~~s~~l~g~~ 172 (276)
T cd08983 96 WSSRLYDNTGGFYNYRLYATTTSDFVTFTEPKVWIDLGANVIDTTVVKVGGTYYRFYKNEGS---KDIELARSKSLTGPW 172 (276)
T ss_pred EecccCCCCCCCccEEEEEEecCcccccCCCeEeecCCCCeEeeEEEEeCCEEEEEEecCCC---CcEEEEEeCCCCCCc
Confidence 997422 122232233 4777776432222222223345899999999999985431 234445799999999
Q ss_pred eeCCCccccCCccceeeccCCCceEEEcccCCcccEEEEEeEeC
Q 011114 398 EDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWN 441 (493)
Q Consensus 398 t~~g~Pv~~~~~~~~~~t~gsq~~~V~~~~G~~~~yi~y~d~w~ 441 (493)
+......... .....+..|++.++...||||+ |.+.
T Consensus 173 ~~~~~~~~~~-------~~~~EgP~v~k~~~~~~y~L~~-d~y~ 208 (276)
T cd08983 173 TIVGTGDAGW-------GGAVEGPTVFKLNNGGGWYLYG-DNYS 208 (276)
T ss_pred eEecccccCC-------CCceeCCeEEEECCCCEEEEEE-EECC
Confidence 9875432111 1112233577776533455555 6654
No 62
>cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J. This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). The overall sequence homology between the two families is low (<15% identity), but common sequence motifs have been identified. GH32 enzymes are invertases that also include other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named inverta
Probab=98.99 E-value=2.1e-08 Score=99.20 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=98.3
Q ss_pred EecCccccchhhhhhccccCCCCCCCCCChhhhcCCCcccceeeecccCCcceEEeecCCCCCCCCCCCcCCCCeEEee-
Q 011114 84 ISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYY- 162 (493)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~~~~~~~~~yi~- 162 (493)
...+..|+||++||..+.+||+. ..+.+. .+..|+|-|...- +.. ..||+ ++.+.. ......+.+.
T Consensus 34 ~~~~a~S~D~~~w~~~~~~l~~~---~~~~~~--~~~~~~p~v~~~~--dg~-~~~~Y----t~~~~~-~~~~~~i~~A~ 100 (276)
T cd08979 34 RIGAASSDDGTWWTRPPAPLPPG---PPGSFD--DGGVWTPSVVRDP--DGT-YRMFY----TGYDRP-KGAVQRIGLAT 100 (276)
T ss_pred eeEEEEcCCCCccEECCcCccCC---CCCchh--cCCeEcceEEEcC--CCe-EEEEE----ecccCC-CCCcceEEEEE
Confidence 46789999999999999988332 113444 3578899777651 134 55655 333321 1111112222
Q ss_pred --cCCceeCCCCCcE---------------EeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCC
Q 011114 163 --PGRIWLDTEGAPI---------------QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKD 225 (493)
Q Consensus 163 --pG~~w~dt~G~pI---------------~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~D 225 (493)
.+..|......++ ...||.|++++++|+|||+-+.... .....|.+++|+|
T Consensus 101 S~D~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~dP~v~~~~~~g~y~m~~~~~~~------------~~~~~i~~a~S~D 168 (276)
T cd08979 101 SKDLIHWTKHGPNPVPRWYESGNPGPWDDHAWRDPAVVRDEEGGGWRMYYGARDA------------DERGAIGLATSPD 168 (276)
T ss_pred CCCCCceEECCCCcceeeeecCCCCCcccccccccEEEEECCCCEEEEEEEeEcc------------CCCcEEEEEECCC
Confidence 3344544333321 2368889988766999997654321 0124588999999
Q ss_pred CCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeC
Q 011114 226 MWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDD 275 (493)
Q Consensus 226 LvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~ 275 (493)
|++|+..+.++.... . .....+++|.++. .+|+|||+|+...
T Consensus 169 ~~~W~~~~~~~~~~~-~-----~~~~~~e~P~~~~--~~g~~~l~~~~~~ 210 (276)
T cd08979 169 LIHWTPVPPPPGPRT-G-----YDDGQLEVPQVVK--IDGRWYLLYSGRN 210 (276)
T ss_pred CCcceECCCCCCCCC-c-----ccCCcCccceEEE--ECCEEEEEEEecC
Confidence 999999886531111 1 1245689999996 7899999999864
No 63
>cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase. Glycosyl hydrolase family 68 (GH68) consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Levansucrase, also known as beta-D-fructofuranosyl transferase, catalyzes the transfer of the sucrose fructosyl moiety to a growing levan chain. Similarly, inulosucrase catalyzes long inulin-type of fructans, and beta-fructofuranosidases create fructooligosaccharides (FOS). However, in the absence of high fructan/sucrose ratio, some GH68 enzymes can also use fructan as donor substrate. GH68 retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic n
Probab=98.77 E-value=2.3e-07 Score=96.48 Aligned_cols=194 Identities=14% Similarity=0.177 Sum_probs=111.8
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCChhhhcCCCcccceeeecccCCcceEEeecCCCCCCCCCC----CcC--C---
Q 011114 85 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPM----KDN--G--- 155 (493)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~----~~~--~--- 155 (493)
+.|..|+||++|++.+..+|+ .+.. +...|++-+.. .++..+...|| +........ ..+ .
T Consensus 43 wgh~~S~dlv~W~~~~~l~p~-------~~~d-~~g~wSGsa~~--~~dg~~~lfYT-g~~~~~~~~~~~~Q~ia~a~~~ 111 (349)
T cd08997 43 IGYFYSRAGGNWIDGGKVFPD-------GLSP-GSREWSGSATL--DDDGTVQLFYT-AVGRKGEPQPTFTQRLALARGT 111 (349)
T ss_pred EEEEEeCCCCcccCCCccCCC-------Cccc-CCCeEcceEEE--eCCCeEEEEEe-ccccCCCCCCCceEEEEEEECC
Confidence 778999999999998877774 3444 45788885433 22355555555 211000011 000 0
Q ss_pred ----------CCeEEee-cCCceeCC-------CCCcE-EeeCCceEEECCCCEEEEEEEecCCCc-cc-----------
Q 011114 156 ----------NDSFYYY-PGRIWLDT-------EGAPI-QAHGGGILYDERSRTYFWYGEYKDGPT-YH----------- 204 (493)
Q Consensus 156 ----------~~~~yi~-pG~~w~dt-------~G~pI-~ahgg~Ii~~~~~g~YY~ygT~~~~~~-~~----------- 204 (493)
+.+.-+. +|...... .++.+ .-+||.++.++++|++||.-+...+.. ..
T Consensus 112 ~~~v~~~~~~~~~~lf~~Dg~~Yqt~~q~~~~~~~~~~~~fRDP~vf~d~~~G~~ymvfeant~~~~g~~~~~~~~~~~~ 191 (349)
T cd08997 112 LSVVNLSGFEDHHELFEPDGDLYQTDQQYEGTGAQGDIKAFRDPFVFEDPETGKTYLLFEGNTAGERGSQECTEAELGRV 191 (349)
T ss_pred CcceEecccCccceeeeCCCceEEeccccccccccCccCcccCCEEEecCCCCcEEEEEEeccCCCCCcccccccccccc
Confidence 0111112 22222111 11222 237999999886788888766543211 10
Q ss_pred ----cccccc-cccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCC-
Q 011114 205 ----AHKKAA-ARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNY- 278 (493)
Q Consensus 205 ----~~~~g~-~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~~- 278 (493)
....++ ......|+.++.|+||.+|+..+.++..... ...+++|+++. .+|+|||+++.....+
T Consensus 192 ~~~~~~~~~a~~~~G~IGia~~~s~dl~~W~~~~PL~~a~~v--------~d~~E~P~v~~--~~gk~yL~~s~~~~~~~ 261 (349)
T cd08997 192 LPDTVKPDGASYQNGNVGIAVAKNDDLTEWKLLPPLLEANGV--------NDELERPHVVF--HNGKYYLFTISHRSTFA 261 (349)
T ss_pred ccccccccccccccceEEEEEecCCCCCCcEEcCccccCCCc--------CCceEcceEEE--ECCEEEEEEeCCcCccc
Confidence 000000 0012234555678899999999887764321 34599999996 8999999999654322
Q ss_pred ----CcceEEEEEeCCCCCCceecc
Q 011114 279 ----TKAAVGVAISDYPTGPFDYLY 299 (493)
Q Consensus 279 ----~~~~IGVA~SdsP~GPf~~~~ 299 (493)
+.-.+..++|+++.|||+...
T Consensus 262 ~~~~~~~~~~g~vsdsl~GP~~~~n 286 (349)
T cd08997 262 PGLSGPDGLYGFVSDSLRGPYKPLN 286 (349)
T ss_pred cccCCCCcEEEEEeCCCCCCCccCC
Confidence 122466779999999999854
No 64
>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process
Probab=98.73 E-value=1.9e-06 Score=84.27 Aligned_cols=196 Identities=19% Similarity=0.252 Sum_probs=123.9
Q ss_pred eCCceEEECCCCEEEEEEEecC-CCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeec
Q 011114 178 HGGGILYDERSRTYFWYGEYKD-GPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERP 256 (493)
Q Consensus 178 hgg~Ii~~~~~g~YY~ygT~~~-~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP 256 (493)
-|+.|++. +|+|.+|+|..+ +.+| +--.|.+ +.+|...+.+-... + ....-||
T Consensus 26 KD~T~V~y--nGk~~VyAtt~d~~~~y-------------~sm~f~~--Ftdws~~~sA~q~~-------m--~~~~vAP 79 (271)
T PF03664_consen 26 KDFTIVPY--NGKHHVYATTADTGGGY-------------GSMNFGP--FTDWSQMASASQNY-------M--DQSAVAP 79 (271)
T ss_pred cCceEEeE--CCEEEEEEEeccCCCcc-------------ceEeeec--cCCHHHhhcccccc-------C--Ccccccc
Confidence 46677765 499999999763 2222 1122443 56788776542211 1 2336799
Q ss_pred eEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCC--ceecccC-----CCCCCCcCCceEEEcCCCcEEEEEEecC
Q 011114 257 KVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGP--FDYLYSK-----RPHGFDSRDMTIFKDDDGVAYLVYSSED 329 (493)
Q Consensus 257 ~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GP--f~~~~~~-----~p~g~~siDPsvF~DdDGk~YL~~g~~~ 329 (493)
+|+|-+-.+.|||.|-... ....+.++++|+.| |.....+ ...+...||+.|+-| |-..||++.+.
T Consensus 80 ~vFYFaPk~~W~L~yQwg~-----~~fsY~Ts~DptnpngWSapq~lf~g~i~~~~~g~iD~~vI~D-~~n~yLFfa~D- 152 (271)
T PF03664_consen 80 QVFYFAPKNIWYLAYQWGP-----AAFSYSTSSDPTNPNGWSAPQPLFSGSISGSGTGPIDQWVICD-DTNMYLFFAGD- 152 (271)
T ss_pred eEEEecCCcEEEEEEecCC-----CcceeecCCCCCCCccCCCCcccccccccCCCCCceeeEEEec-CCceEEEEcCC-
Confidence 9999888899999987532 34567888898876 6643322 122346799999975 55899999864
Q ss_pred CCceEEEEcCC-CCCCccc-cEEEee---cCceeeeeEEEEEC--CEEEEEEeCCCCCCCCcEEEEEECCCCCCceeCC-
Q 011114 330 NSELHIGPLTS-DYLDVSN-VVRRIL---VGQHREAPALFKHL--GTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMG- 401 (493)
Q Consensus 330 n~~i~iaeLs~-D~~~~~g-~~~~i~---~g~~~EgP~i~K~~--G~YYL~yS~~tg~~~n~~v~~~Sdsp~GPwt~~g- 401 (493)
|+.|+-+++.- +.-.-.| ....+. ....+||+.|+|.+ ++|.|+..+- |-...|-.-++|+|+.|||+...
T Consensus 153 nGkiYRs~~~i~nFP~~fgs~~~vvmsd~~~nLFEA~~VYkv~G~~~YLmiVEai-Gs~gRyFRSfTa~sL~G~Wtp~A~ 231 (271)
T PF03664_consen 153 NGKIYRSSMPIGNFPGGFGSSYTVVMSDTRNNLFEAVQVYKVKGQNQYLMIVEAI-GSDGRYFRSFTATSLDGPWTPQAA 231 (271)
T ss_pred CCcEEEeccchhhCCCCCCCceEEEEecCccceeeeeEEEEEcCCceEEEEEEEe-cCCCcEEEeeecCCCCCcceeccc
Confidence 57787776643 2211123 233332 24689999999985 5788887532 11123333457999999999873
Q ss_pred ---CccccC
Q 011114 402 ---NPCIGG 407 (493)
Q Consensus 402 ---~Pv~~~ 407 (493)
+|..+.
T Consensus 232 tEsnPFAg~ 240 (271)
T PF03664_consen 232 TESNPFAGK 240 (271)
T ss_pred cccCCcccc
Confidence 565543
No 65
>PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure []. ; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 3UGG_A 3UGH_B 3UGF_B 1Y9M_A 1Y4W_A ....
Probab=98.72 E-value=8.8e-08 Score=97.99 Aligned_cols=221 Identities=17% Similarity=0.200 Sum_probs=123.7
Q ss_pred hheeeeeeccCCCCcceeeEEecCccccchhhhhhccccCCCCCCCCCChhhhcCCCcccceeeecccCCcceEEeecCC
Q 011114 64 LHFFSLVSHKDGTSGEIELHISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPD 143 (493)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~v~~~~~~~p~v~~~~~p~ 143 (493)
.|+|.+.+-.....+ .. .--|..|+||+|||+.+.||+|- .+... .-.|+--+..- ++ .+..+||
T Consensus 22 yHlFyQ~~P~~~~~g--~~-~WgHa~S~Dlv~W~~~~~aL~P~------~~~d~-~g~~SGs~~~~--~~-~~~~~YT-- 86 (308)
T PF00251_consen 22 YHLFYQYNPFGPEWG--NM-HWGHATSKDLVHWEHLPVALPPD------EEYDA-DGCFSGSAVVD--DD-NLVLFYT-- 86 (308)
T ss_dssp EEEEEEEETTSSSS---SB-EEEEEEESSSSSEEEEEEEE-SS------SGGGT-TEEEEEEEEEE--TT-CEEEEEE--
T ss_pred EEEEeccCCCCcccc--ee-EEEEEECCCCCCceeCCceEccc------ccCCc-CccCcceEEEE--CC-EEEEEEe--
Confidence 466655554333332 11 12479999999999999999875 22332 23454422222 22 3455555
Q ss_pred CCCCCCCC-CcCCCCeEEeecCCceeCCC-CCcEEe----------eCCceEEECCCCEEEEEEEecCCCcccccccccc
Q 011114 144 MKTAIDPM-KDNGNDSFYYYPGRIWLDTE-GAPIQA----------HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAA 211 (493)
Q Consensus 144 ~~~aaDP~-~~~~~~~~yi~pG~~w~dt~-G~pI~a----------hgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~ 211 (493)
+.... ..++.-+...-+|..|.... ++||.. +||.|++.++ ++|||+-.....
T Consensus 87 ---g~~~~~~~~q~~A~s~d~~~~w~k~~~~~pvi~~~p~~~~~~~RDP~v~~~~~-~~~~m~~g~~~~----------- 151 (308)
T PF00251_consen 87 ---GNNRDGKQVQCLAYSTDDGITWTKYPQGNPVIPEPPPGDTTDFRDPKVFWRED-GRWYMLLGAGRD----------- 151 (308)
T ss_dssp ---EEETTTEEEEEEEEESSTTSSEEE-TTTCESBESSSTTSCTSEEEEEEEEECT-TEEEEEEEEEET-----------
T ss_pred ---ccCCCCCeEEEEEEECCCCCceEEcCCCCcEEEecccCCCCccccCeEEEecC-CEEEEEEecccc-----------
Confidence 22221 11222222224667777766 576653 5788877764 889987543211
Q ss_pred ccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCC------EEEEEEEEeCCCCCcceEEE
Q 011114 212 RVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTG------KYVMWMHIDDCNYTKAAVGV 285 (493)
Q Consensus 212 ~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~G------kYylyfs~~~~~~~~~~IGV 285 (493)
....+.+|+|+||.+|+..+........ .+...++|+++.-...+ ++||.++..+........++
T Consensus 152 --~~g~i~~y~S~Dl~~W~~~~~l~~~~~~-------~g~~~ECPdlf~l~~~~~~~~~~~~vl~~s~~g~~~~~~~~~Y 222 (308)
T PF00251_consen 152 --GRGCILLYTSDDLIHWEYLGPLFIPGDN-------GGGMWECPDLFPLDGKGDGTGKWVWVLIFSPQGIEDNGHGTYY 222 (308)
T ss_dssp --TEEEEEEEEESSSSSEEEEEEESEEETT-------TSSEEEEEEEEEEEBTTSSSEEEEEEEEEEEESTTTTTTEEEE
T ss_pred --CcceEEEEEcCCcccCceeCcccccccc-------cccccccceEEEECCcccccceEEEEEEecccccccccccceE
Confidence 1235889999999999999987665331 24667899999632221 25777787543212344455
Q ss_pred EEeCC--CCCCceec-ccC--CCCCCCcCCceEEEcCCC-cEEE
Q 011114 286 AISDY--PTGPFDYL-YSK--RPHGFDSRDMTIFKDDDG-VAYL 323 (493)
Q Consensus 286 A~Sds--P~GPf~~~-~~~--~p~g~~siDPsvF~DdDG-k~YL 323 (493)
++.+- ..+.|+.. ... .-.|....=|..|.|++| +.+|
T Consensus 223 ~vG~~d~~~~~f~~~~~~~~~lD~G~dfYA~qtf~~~~~~r~i~ 266 (308)
T PF00251_consen 223 MVGDFDFDGGTFTPDDSSFQRLDYGFDFYAPQTFYDPDGGRRIL 266 (308)
T ss_dssp EEEEEETTTTEEEESSTTSEESBSSSS-EEEEEEEETTTTEEEE
T ss_pred EeEEecCCCCeeeeeccccceeccCccccCCchhcCCCcCcEEE
Confidence 55443 56778754 111 112444455677888776 5444
No 66
>TIGR01322 scrB_fam sucrose-6-phosphate hydrolase.
Probab=98.71 E-value=5.7e-07 Score=96.70 Aligned_cols=207 Identities=16% Similarity=0.181 Sum_probs=114.1
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCChhhhcCCCcccceeeecccCCcceEEeecCCCCCCCCCCCcCCCCeEEe-ec
Q 011114 85 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYY-YP 163 (493)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~~~~~~~~~yi-~p 163 (493)
--|..|+||+|||+.+.+|+|- ..+- ++..+++-+..- +-.+..+|| +... ..+........+.+ -.
T Consensus 57 Wgha~S~Dlv~W~~~~~al~P~-----~~~d--~~G~~sGsav~~---~g~~~l~YT-g~~~-~~~~~~~~~q~lA~S~D 124 (445)
T TIGR01322 57 WGHYTSKDLVHWEDEGVALAPD-----DPYD--SHGCYSGSAVDN---NGQLTLMYT-GNVR-DSDWNRESYQCLATMDD 124 (445)
T ss_pred EEEEECCCccccEECCccCcCC-----Cccc--CCceEECeEEee---CCEEEEEEe-cccc-CCCCCeeEEEEEEEcCC
Confidence 4589999999999999999764 2232 235677754432 344455555 1110 00000000001211 24
Q ss_pred CCceeCCCCCcEEe----------eCCceEEECCCCEEEEE-EEecCCCccccccccccccccCcEEEEEeCCCCCCEEe
Q 011114 164 GRIWLDTEGAPIQA----------HGGGILYDERSRTYFWY-GEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNE 232 (493)
Q Consensus 164 G~~w~dt~G~pI~a----------hgg~Ii~~~~~g~YY~y-gT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~ 232 (493)
+..|... ++||.. .||.|.+. +|+|||+ +..... ....+.+|+|+||++|+..
T Consensus 125 g~~~~k~-~~pvi~~~~~~~~~~fRDP~V~~~--~g~~~M~~g~~~~~-------------~~g~i~ly~S~Dl~~W~~~ 188 (445)
T TIGR01322 125 DGHFEKF-GIVVIELPPAGYTAHFRDPKVWKH--NGHWYMVIGAQTET-------------EKGSILLYRSKDLKNWTFV 188 (445)
T ss_pred CCeEEEC-CCceEeCCCCCCcCcCCCCcEEeE--CCEEEEEEEEecCC-------------CceEEEEEECCCcccCeEe
Confidence 5556543 445543 47888765 4889885 332211 0123679999999999999
Q ss_pred ceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCC-----C-CcceEEEEEe--CCCCCCceecccCC--
Q 011114 233 GIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN-----Y-TKAAVGVAIS--DYPTGPFDYLYSKR-- 302 (493)
Q Consensus 233 G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~-----~-~~~~IGVA~S--dsP~GPf~~~~~~~-- 302 (493)
+.++....... . ..+...+.|+++. -+|+++|+|+..+.. + .....++.+. +-..+.|+......
T Consensus 189 g~~~~~~~~~~-~--~~g~~~ECPdlf~--l~~k~vL~~s~~g~~~~~~~~~~~~~~~Y~vG~~d~~~~~f~~~~~~~~l 263 (445)
T TIGR01322 189 GEILGDGQNGL-D--DRGYMWECPDLFS--LDGQDVLLFSPQGLDASGYDYQNIYQNGYIVGQLDYEAPEFTHGTEFHEL 263 (445)
T ss_pred ccccccccccc-C--CccceEECCeEEE--ECCcEEEEEeccccCcccccccccccceeEEEEEECCCCEEecCCCCcee
Confidence 97754321110 0 0133566999995 789999999865421 1 1112344444 32234565321111
Q ss_pred CCCCCcCCceEEEcCCCcEEEE
Q 011114 303 PHGFDSRDMTIFKDDDGVAYLV 324 (493)
Q Consensus 303 p~g~~siDPsvF~DdDGk~YL~ 324 (493)
-.|....=|..|.|+||+.+|+
T Consensus 264 D~G~dfYA~qtf~~~~gr~i~~ 285 (445)
T TIGR01322 264 DYGFDFYAPQTFLAPDGRRILV 285 (445)
T ss_pred ccCcCceeeeeEECCCCCEEEE
Confidence 1244455667888888886544
No 67
>smart00640 Glyco_32 Glycosyl hydrolases family 32.
Probab=98.69 E-value=5.1e-07 Score=96.89 Aligned_cols=201 Identities=15% Similarity=0.119 Sum_probs=117.2
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCChhhhcCCCcccceeeecccCCcceEEeecCCCCCCCCCC-CcCCCCe---EE
Q 011114 85 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPM-KDNGNDS---FY 160 (493)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~-~~~~~~~---~y 160 (493)
.-|..|+||+||++.+.||.|- .+.. +...|++-+..- +++ +..+||... +... ....... .+
T Consensus 40 Wgha~S~Dlv~W~~~~~aL~P~------~~~d-~~g~~sGsav~~-~~~--~~~~YTg~~---~~~~~~~~~~~~~~~~a 106 (437)
T smart00640 40 WGHAVSKDLVHWTHLPVALAPD------EWYD-SNGVFSGSAVID-PGN--LSLLYTGNV---AIDTNVQVQRQAQQLAA 106 (437)
T ss_pred EEEEEcCCcceeeecCcccCCC------CcCC-CCcEEEEEEEEC-CCc--eEEEEcCCc---ccccccCcccEEEEEEE
Confidence 5689999999999999999764 1223 234777754432 223 455555111 1111 1111111 12
Q ss_pred e-ecCCceeCCCCCcEEe----------eCCceEEECCCCEEEEEEEe-cCCCccccccccccccccCcEEEEEeCCCCC
Q 011114 161 Y-YPGRIWLDTEGAPIQA----------HGGGILYDERSRTYFWYGEY-KDGPTYHAHKKAAARVDIIGVGCYSSKDMWT 228 (493)
Q Consensus 161 i-~pG~~w~dt~G~pI~a----------hgg~Ii~~~~~g~YY~ygT~-~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvn 228 (493)
. -.+..|....++||.. +||.|.++++ ++|||+-.. ..+ ....+.+|+|+||.+
T Consensus 107 ss~d~~~w~k~~~~Pvi~~~p~~~~~~fRDP~Vf~~~~-~~~~m~~g~~~~~-------------~~G~i~ly~S~Dl~~ 172 (437)
T smart00640 107 SDDLGGTWTKYPGNPVLVPPPGIGTEHFRDPKVFWYDG-DKWYMVIGASDED-------------KTGIALLYRSTDLKN 172 (437)
T ss_pred ECCCCCeeEECCCCcEEeCCCCCCCCCcCCCCccEECC-CEEEEEEEEEecC-------------CCeEEEEEECCCccc
Confidence 2 3677888877788865 3578877653 689986442 211 012388999999999
Q ss_pred CEEeceeccCCCcccccccCCCCeeeeceEEEEccCC-----EEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccC--
Q 011114 229 WKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTG-----KYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSK-- 301 (493)
Q Consensus 229 Wt~~G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~G-----kYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~-- 301 (493)
|+..+.++...... .+...+.|+++. -++ ++||.++..+.......+|....+ ..|+.....
T Consensus 173 W~~~~~~~~~~~~~------~g~~wECPdlf~--l~~~~~~~~~vLi~s~~g~~~~~y~~G~~~g~---~~f~~~~~~~~ 241 (437)
T smart00640 173 WTLLGELLHSGVGD------TGGMWECPDLFP--LPGDGDTSKHVLKVSPQGGSGNYYFVGYFDGS---DQFTPDDPEDV 241 (437)
T ss_pred CeECCcccccCCCC------ccceEECCcEEE--eCCCCCceeEEEEECcCCCCccEEEEEEEcCc---eeEeECCcccc
Confidence 99999876532110 135688999995 667 999999987432223444543321 245543211
Q ss_pred -----CCCCCCcCCceEEEcCCC-cEEE
Q 011114 302 -----RPHGFDSRDMTIFKDDDG-VAYL 323 (493)
Q Consensus 302 -----~p~g~~siDPsvF~DdDG-k~YL 323 (493)
.-.|....=|..|.|++| +.+|
T Consensus 242 ~~~~~lD~G~dfYA~qt~~~~~~~r~i~ 269 (437)
T smart00640 242 GIGLRLDYGFDFYASQTFYDPDGNRRIL 269 (437)
T ss_pred CccceEecCCCceeeeeeecCCCCcEEE
Confidence 111344555678888665 5444
No 68
>cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function. This subfamily has sequences similar to the glycosyl hydrolase family 43 (GH43) and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=98.60 E-value=1.9e-06 Score=86.17 Aligned_cols=138 Identities=19% Similarity=0.290 Sum_probs=86.3
Q ss_pred eceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceeccc--CCC--C----CCCcCCceEEEcCCCcEEEEEE
Q 011114 255 RPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYS--KRP--H----GFDSRDMTIFKDDDGVAYLVYS 326 (493)
Q Consensus 255 AP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~--~~p--~----g~~siDPsvF~DdDGk~YL~~g 326 (493)
.|.|++ .+|+|||+|.+.+.+ ....||+|+|++. -.|+.... ..| . .....||.|++. ||++||+|.
T Consensus 2 nP~v~~--~~G~y~l~y~~~~~~-~~~~ig~A~S~Dg-~~~~~~~~~~i~p~~~~~~~~~gv~dP~v~~~-~g~y~m~Yt 76 (268)
T cd08993 2 NPAVVY--DNGEFYLLYRAAGND-GVIRLGLARSRDG-LHFEIDPDPPVWPPPEDGFEEGGVEDPRIVKI-DDTYYITYA 76 (268)
T ss_pred cCeEEE--ECCEEEEEEEEECCC-CceEEEEEEECCC-ceEEECCcceEcCCCCCcccccCccCcEEEEE-CCEEEEEEE
Confidence 377886 799999999986543 3578999999883 35775331 112 1 134679999985 779999998
Q ss_pred ecC----CCceEEEEcCCCCCCccccEEEeecCceeeeeEEE--EECCEEEEEEeCCCCC-CCCcEEE-EEECCCCCCce
Q 011114 327 SED----NSELHIGPLTSDYLDVSNVVRRILVGQHREAPALF--KHLGTYYMVTSGCTGW-APNEALV-HAAESIMGPWE 398 (493)
Q Consensus 327 ~~~----n~~i~iaeLs~D~~~~~g~~~~i~~g~~~EgP~i~--K~~G~YYL~yS~~tg~-~~n~~v~-~~Sdsp~GPwt 398 (493)
+.. ...+.+++ |+|+.+++-... +... ....+.++ |.+|+|||+|+...+. ...+.++ +.|+++. -|+
T Consensus 77 a~~~~~~~~~i~lA~-S~D~~~W~~~~~-~~~~-~~~d~~~~p~~~~g~y~m~~r~~~~~~~~~~~I~lA~S~Dl~-~W~ 152 (268)
T cd08993 77 ARPNAPNGTRIGLAT-TKDFITFERLGT-SLVP-NNRDGILFPEKINGKYVMLHRPFEYGGTSPPDMWLSFSPDLV-HWG 152 (268)
T ss_pred ccCCCCCCcEEEEEE-eCCcceEEEecc-cCCC-CCCCEEEeeEEECCEEEEEEccccCCCCCCCcEEEEECCCcC-ccC
Confidence 753 23466665 567776643211 1111 11235566 4699999999643211 1234454 4588776 587
Q ss_pred eCC
Q 011114 399 DMG 401 (493)
Q Consensus 399 ~~g 401 (493)
..+
T Consensus 153 ~~~ 155 (268)
T cd08993 153 NHR 155 (268)
T ss_pred CCe
Confidence 654
No 69
>COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=98.52 E-value=2e-06 Score=92.70 Aligned_cols=209 Identities=18% Similarity=0.193 Sum_probs=122.6
Q ss_pred ecCccccchhhhhhccccCCCCCCCCCChhhhc----CCCcccceeeecccCCcceEEeecCCCCCCCCCCCcCC-CCeE
Q 011114 85 SHNPSFRELVEVEEENIQIPPPRGKRSPRAAKR----RPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNG-NDSF 159 (493)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~p~~~~~~~p~~~~~----~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~~~~~-~~~~ 159 (493)
.+...|+||++|+...-.|- +.+..-.|. .+-.|||.|... +.....+|++-.- +...+ +...
T Consensus 55 l~i~hS~DL~nW~~v~tpl~----~~~~ld~kgn~~~S~giWAPdl~y~---dGkfwl~ytdvk~-----~~g~~k~~~n 122 (549)
T COG3507 55 LAIHHSRDLVNWTLVSTPLI----RTSQLDLKGNFPYSGGIWAPDLSYH---DGKFWLYYTDVKR-----SGGPYKNAGN 122 (549)
T ss_pred eeeeccccccCcEEeccccc----CcchhhhhcccCCCCceeccceecC---CCcEEEEEecccc-----cCCccccccc
Confidence 34577999999998886332 222322221 357899988854 7775555542222 11122 2245
Q ss_pred Eeec----CCceeCCCCCcE-EeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEec-
Q 011114 160 YYYP----GRIWLDTEGAPI-QAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEG- 233 (493)
Q Consensus 160 yi~p----G~~w~dt~G~pI-~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G- 233 (493)
|++. -..|.|..--+. +++||++.+|+++.+|.+++.+..+...+ .++...+++++.+ .-+-.|
T Consensus 123 yl~t~~s~~G~WsDpi~l~~~~~iDPslf~D~dGr~wlv~~~w~~~~~~~-------~~~~i~l~~~~~~---~~~l~g~ 192 (549)
T COG3507 123 YLVTAESIDGPWSDPIKLNGSNAIDPSLFFDKDGRKWLVNGSWDGGIFMH-------SFAGIILQEYDKT---TQKLVGQ 192 (549)
T ss_pred EEEEecCCCCCcccceecCCcCccCCceeecCCCCEEEEecccCCCcccc-------cccceeeeecccc---ccccCCc
Confidence 6553 345666552222 37899999999988999998876542110 0122223333332 222222
Q ss_pred ---eeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCC-------C
Q 011114 234 ---IVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR-------P 303 (493)
Q Consensus 234 ---~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~-------p 303 (493)
.++... +....++|.+. +++|=||||.+-.........+.||.|++++|||++..... |
T Consensus 193 ~~~~~~~G~---------~~~~~EGPhl~--k~~gYYYL~~a~gG~t~~gh~~~vaRSKsidGPYe~~~~~pllt~~~~p 261 (549)
T COG3507 193 GYKIIFDGG---------NGGLTEGPHLY--KKTGYYYLYVAEGGLTTYGHAIRVARSKSIDGPYEDHPGNPLLTSRDNP 261 (549)
T ss_pred cceeEeccC---------CCccccCceee--ccCCEEEEEEEcCCCCccceeEEEEeccCCCCCcccCCCCeeeeecCCC
Confidence 222221 23468999444 68998888877654233468899999999999999764321 1
Q ss_pred CC--CCcCCceEEEcCCCcEEEEEE
Q 011114 304 HG--FDSRDMTIFKDDDGVAYLVYS 326 (493)
Q Consensus 304 ~g--~~siDPsvF~DdDGk~YL~~g 326 (493)
.. ..+-...+++.++|++|+.+.
T Consensus 262 ~~~~q~~gh~~~v~t~~g~w~~~~~ 286 (549)
T COG3507 262 ENPLQKAGHGTLVVTPTGEWYFAYL 286 (549)
T ss_pred CChhhhcCCcceEECCCCcEeeeee
Confidence 11 123345566677899998887
No 70
>PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety. On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B.
Probab=98.49 E-value=1.7e-05 Score=81.59 Aligned_cols=176 Identities=17% Similarity=0.191 Sum_probs=107.9
Q ss_pred cEEEEEeCCCCCCEEece-eccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCc
Q 011114 217 GVGCYSSKDMWTWKNEGI-VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPF 295 (493)
Q Consensus 217 gi~v~sS~DLvnWt~~G~-vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf 295 (493)
.|.+..|+|.++|+.... +|.+... +...+++-|-|++ .+++|||+|++.+.. ..++++|+|++-. .|
T Consensus 61 ~iglA~S~DGi~f~~~~~pil~P~~~------~e~~GvEDPRVt~--i~d~yymtYta~~~~--~~~~~la~s~D~~-~~ 129 (312)
T PF04041_consen 61 RIGLARSDDGIHFERDPEPILYPDTD------YEEWGVEDPRVTK--IDDTYYMTYTAYSGK--GPRIGLATSKDFK-HW 129 (312)
T ss_dssp EEEEEEESSSSS-EE-SS-SBEE-SS------TTHTEEEEEEEEE--ETTEEEEEEEEEESS--SEEEEEEEESSSS-SE
T ss_pred EEEEEEccCCcCceECCCCEEccCCC------CcccCccceeEEE--ECCEEEEEEEEecCC--CcccceEEccchH-hh
Confidence 588999999999998753 4444332 1335699999996 789999999987643 5789999998853 46
Q ss_pred eecccCCCC-C-------CCcCCceEEEc-CCCcEEEEEEecCCCceEEEEcCCCCCCccccEEEeec-------Ccee-
Q 011114 296 DYLYSKRPH-G-------FDSRDMTIFKD-DDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILV-------GQHR- 358 (493)
Q Consensus 296 ~~~~~~~p~-g-------~~siDPsvF~D-dDGk~YL~~g~~~n~~i~iaeLs~D~~~~~g~~~~i~~-------g~~~- 358 (493)
+..+...+. . ....|..+|-. -+|+++|++. ...|+++. |+|++.|......+.. ...+
T Consensus 130 ~r~g~~~~~~~~~~~~~~~~~kd~~lfp~ki~Gky~m~~r---~~~i~la~-S~Dl~~W~~~~~~~~~~~~~~~d~~kiG 205 (312)
T PF04041_consen 130 ERHGKIFPPFNGNEDYRDFWSKDGALFPEKINGKYAMLHR---DPSIWLAY-SPDLIHWGNHREPLLSPRPGWWDSSKIG 205 (312)
T ss_dssp EEEECTTTTTCTS-EEEEEEEECCEEEESEETTEEEEEEE---SSSBEEEE-ESSSSSEEEEBETSB--STTSSCSSEEE
T ss_pred EEeccccCcccccccccccccCceEEEEEEECCEEEEEEC---CCCEEEEe-cCCcccccccccccccCCCCcChhhccc
Confidence 665432211 1 23478888876 3899998887 46788887 5888887654332221 1233
Q ss_pred eeeEEEEECCEEEEEEeC-CCCCCCCcEEEEEECCCCCCceeC---CCccccC
Q 011114 359 EAPALFKHLGTYYMVTSG-CTGWAPNEALVHAAESIMGPWEDM---GNPCIGG 407 (493)
Q Consensus 359 EgP~i~K~~G~YYL~yS~-~tg~~~n~~v~~~Sdsp~GPwt~~---g~Pv~~~ 407 (493)
-||.-+|-+.-|.++|-+ .+.....|.++++-=+...|.+-. .+|++.+
T Consensus 206 ~g~pPi~t~~GwL~iyHG~~~~~~~~Y~~g~~LlD~~dP~kvi~r~~~pil~P 258 (312)
T PF04041_consen 206 AGPPPIKTDEGWLLIYHGNVTDEGRVYRLGAALLDLDDPTKVIARSPEPILEP 258 (312)
T ss_dssp E-S-EEEETTEEEEEEEEEESSTTTEEEEEEEEE-SSSTTSEEEEBSS-SB-S
T ss_pred CCCCceEecCCEEEEEeccccCCCCEEEEEEEEEcCCCCcceEECCCCceEcC
Confidence 346667765447777764 223334466665433344454422 4566654
No 71
>KOG0228 consensus Beta-fructofuranosidase (invertase) [Carbohydrate transport and metabolism]
Probab=98.00 E-value=6.7e-05 Score=80.21 Aligned_cols=162 Identities=19% Similarity=0.098 Sum_probs=103.3
Q ss_pred CCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEE
Q 011114 188 SRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKY 267 (493)
Q Consensus 188 ~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkY 267 (493)
+|.|.+|-++... .+.| +-..+++..|+||+||+....|+.+.+. .+.+.+|..++.-+ .+|+=
T Consensus 69 kG~yHLFyQyNP~---gavw------g~ivWGHavSkDLinW~~lp~Ai~Ps~~------~ding~wSGSati~-~~~~~ 132 (571)
T KOG0228|consen 69 KGKYHLFYQYNPK---GAVW------GNIVWGHAVSKDLINWEALPPAIAPSEW------FDINGCWSGSATID-PNNSP 132 (571)
T ss_pred CcEEEEEEecCCC---Ccee------eeeEeeeecchhhccccccCcccCCCCc------cccCccccceEEEc-cCCCe
Confidence 4999999988642 1122 1245778889999999999998887542 24567999999985 56667
Q ss_pred EEEEEEeCCCCCcceEEEEE------------eCCCCCCceeccc-CCCCCCCcCCceEEEc-CCCcEEEEEEecC-CCc
Q 011114 268 VMWMHIDDCNYTKAAVGVAI------------SDYPTGPFDYLYS-KRPHGFDSRDMTIFKD-DDGVAYLVYSSED-NSE 332 (493)
Q Consensus 268 ylyfs~~~~~~~~~~IGVA~------------SdsP~GPf~~~~~-~~p~g~~siDPsvF~D-dDGk~YL~~g~~~-n~~ 332 (493)
+|+++..+.+. .+-.-+|. ++++..||..... .......++||+++.+ +||++-|+-++-. ...
T Consensus 133 vilytg~d~~~-rqVqn~a~p~d~sdp~l~~w~k~~gnp~~~p~~V~~in~s~FRDPttaW~~~dgkWrm~vgsk~~q~g 211 (571)
T KOG0228|consen 133 VILYTGIDPNN-RQVQNYAYPKDVSDPQLIAWSKDGGNPFMKPDKVLGINSSQFRDPTTAWFGQDGKWRMTVGSKIKQRG 211 (571)
T ss_pred EEEecccCcCc-eEEEEEeccCCCCchhhheeecCCCceeeccccccCCChhhccCCceeeecCCCcEEEEEEeecCccc
Confidence 77766554331 12222333 3333344432211 0112356899999988 6889888888742 233
Q ss_pred eEEEEcCCCCCCccccEEEee---cCceeeeeEEEEE
Q 011114 333 LHIGPLTSDYLDVSNVVRRIL---VGQHREAPALFKH 366 (493)
Q Consensus 333 i~iaeLs~D~~~~~g~~~~i~---~g~~~EgP~i~K~ 366 (493)
+.+.--+.|+.+|+...+.+. .+.+.|+|-+|..
T Consensus 212 ~a~~Y~S~Df~~W~k~~~~~h~~~~tgmwECPdffpV 248 (571)
T KOG0228|consen 212 KAIIYSSDDFKHWTKSSVPLHSGDLTGMWECPDFFPV 248 (571)
T ss_pred eEEEEeccchhhhhcccccccccCccceEECCCcEEe
Confidence 444445889988876544432 3578999999874
No 72
>cd08987 GH62 Glycosyl hydrolase family 62, characterized arabinofuranosidases. The glycosyl hydrolase family 62 includes eukaryotic and prokaryotic enzymes, most of which are characterized arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. The enzyme does not act on xylose moieties in xylan that are adorned with an arabinose side chain at both O2 and O3 positions, nor does it display any non-specific arabinofuranosidase activity. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. The catalytic mechanism of this family has not yet been determined, but is predicted to display a single displacement or inverting mechanism, based on its location in the same carbohydrate-active enzymes database (CAZY) clan (Clan F) as that occupied by GH43, a well characterized inverting family. Similarly, the catalytic residues are predicted fr
Probab=97.55 E-value=0.0041 Score=63.27 Aligned_cols=163 Identities=13% Similarity=0.124 Sum_probs=90.2
Q ss_pred hhhhhhccccCCC-CCCCCCChhhhcCCCcccceeeecccCCcceEEeecCC---CCCCCCCCCcCCC--CeEEeecCCc
Q 011114 93 LVEVEEENIQIPP-PRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPD---MKTAIDPMKDNGN--DSFYYYPGRI 166 (493)
Q Consensus 93 l~~~~~~~~~~p~-~~~~~~p~~~~~~~~~~~~~v~~~~~~~p~v~~~~~p~---~~~aaDP~~~~~~--~~~yi~pG~~ 166 (493)
|++|++.+.|+.- ++ +.... ...|||+|-.|.-+ .+....|+-+ ..|+.||+.- ++ ..--++.|..
T Consensus 55 f~~Ws~~g~A~q~~l~----~~~~~--~~fwAPqVfyf~pk-~kwYL~Yq~~~~~yaTs~dp~~P-~~ws~~qpl~~~~~ 126 (303)
T cd08987 55 FTDWSQAASATQYYLQ----NGNMT--GYRVAPQVFYFAPQ-NKWYLIYQWWPAAYSTNSDISNP-NGWSAPQPLFSGTP 126 (303)
T ss_pred ccCHhHhccchhhccc----CCCCC--cccccCEEeeeccC-CEEEEEEecCceEEEeCCCCCCC-CccCCCcccccCcc
Confidence 9999999987741 11 11122 24899999977432 3333334411 1134455442 21 2222332221
Q ss_pred eeCCCCCcEEeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEe-CCCCCCEEe---c-eeccCCCc
Q 011114 167 WLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSS-KDMWTWKNE---G-IVLAAEET 241 (493)
Q Consensus 167 w~dt~G~pI~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS-~DLvnWt~~---G-~vL~~~~~ 241 (493)
.+....+| |..|+ + ++++.|||-..+++ .||.| ..+.|.... . .++.. +.
T Consensus 127 -~~~~~~~I---D~~vI-~-Dd~~~YLff~~dnG------------------~iyra~~~~~nFp~~~~~~~~~~~~-~~ 181 (303)
T cd08987 127 -NGSPGGWI---DFWVI-C-DDTNCYLFFSDDNG------------------KLYRSSTTLGNFPNGGTETVIIMSD-SN 181 (303)
T ss_pred -cCCCCCcc---ceeEE-e-CCCCEEEEEecCCC------------------eEEEEecchhhCCCCCCccEEEecC-CC
Confidence 11111223 34453 3 36899999776543 24443 344433321 1 22211 11
Q ss_pred ccccccCCCCeeeeceEEEEccCC--EEEEEEEEeCCCCCcceEEEEEeCCCCCCceec
Q 011114 242 NETHDLYKLNVLERPKVIYNDRTG--KYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYL 298 (493)
Q Consensus 242 ~~~~~~~~~~~iWAP~Viyn~~~G--kYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~ 298 (493)
..+.++||.|.. .+| +|||.+.+.+.+......+ +||+++.|||+..
T Consensus 182 -------~~~lfEa~~Vyk--v~G~~~YlmiveA~g~~~~rYfrs-~Ts~Sl~GpWt~~ 230 (303)
T cd08987 182 -------KNNLFEASNVYK--VKGQNQYLLIVEAIGSDGGRYFRS-WTATSLDGPWTPL 230 (303)
T ss_pred -------ccccceeeEEEE--ECCCeEEEEEEEecCCCCCCeEEE-EEcCCCCCCceec
Confidence 247899999996 556 9999999987643345566 9999999999976
No 73
>COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]
Probab=97.52 E-value=0.0022 Score=69.62 Aligned_cols=203 Identities=17% Similarity=0.192 Sum_probs=107.9
Q ss_pred cCccccchhhhhhccccCCCCCCCCCChhhhcCCCcccceeeecccCCcceEEeecCCCCCCCCCCCc----CCCCeEEe
Q 011114 86 HNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKD----NGNDSFYY 161 (493)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~~~----~~~~~~yi 161 (493)
-|..|.||+|||.+++||=|- .|.++ +..+.=- .. ..+-.+.-+|| ........ .+.- .|-
T Consensus 73 gHa~S~Dlv~W~~~piaL~Pd------~~~d~-~g~ySGS--AV-~~~~~l~lfyt----g~v~~~~~~r~~~Q~i-A~s 137 (486)
T COG1621 73 GHAVSKDLVHWEHLPIALAPD------DDYDS-HGCYSGS--AV-VDDGNLSLFYT----GNVRDSNGIRQQTQCI-AYS 137 (486)
T ss_pred eeeccCCcccceECCceecCC------Ccccc-CCceeee--EE-EeCCcEEEEEc----cceeccCCcceeEEEE-EEE
Confidence 378999999999999999664 44442 2222211 11 11333355566 22221111 1110 111
Q ss_pred ecCCceeCCCCCcEEe---------eCCceEEECCCCEEEEE-EEecCCCccccccccccccccCcEEEEEeCCCCCCEE
Q 011114 162 YPGRIWLDTEGAPIQA---------HGGGILYDERSRTYFWY-GEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKN 231 (493)
Q Consensus 162 ~pG~~w~dt~G~pI~a---------hgg~Ii~~~~~g~YY~y-gT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~ 231 (493)
-.|..+.--.|+||.. +||.++.++ ++++|++ |--..+ ....|.+|+|.||.+|+.
T Consensus 138 ~dg~~f~K~~~~~i~~~p~~~t~hFRDPKv~w~~-~~~~~~mlgAq~~~-------------~~g~i~lY~S~DL~~W~~ 203 (486)
T COG1621 138 EDGGTFEKYSGNPIIDQPEGYTPHFRDPKVVWDE-GGKWWMMLGAQGED-------------LKGTILLYESDDLKNWQF 203 (486)
T ss_pred cCCCceEeccCCceecCCCcccccCCCCcccccC-CCcEEEEEEEecCC-------------CCceEEEEeCCCccCcEE
Confidence 2233332223444432 477877765 4666664 321110 112488999999999999
Q ss_pred eceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEE-----eCCCC-CcceEEEEEeC-CCCCCceeccc-C--
Q 011114 232 EGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHI-----DDCNY-TKAAVGVAISD-YPTGPFDYLYS-K-- 301 (493)
Q Consensus 232 ~G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~-----~~~~~-~~~~IGVA~Sd-sP~GPf~~~~~-~-- 301 (493)
.|........ .+.+.+.|+++. -.++=+++++. .+..+ +....++.+.+ ++ ..|+.... +
T Consensus 204 ~g~~~~~~~~-------~gym~ECPdlf~--l~~~~~~~~~pqg~~~~~~~~~n~~~~~Y~vG~~dg-~~f~~~~~~~~~ 273 (486)
T COG1621 204 TGEFGLEQGG-------LGYMWECPDLFE--LDGEDVLLFWPQGLSINGGEYDNIYQSGYFVGDFDG-KEFKLDDGQFRE 273 (486)
T ss_pred EEeeccCCCc-------eeeEEECCCeEE--ecCcCceEEcceeeecCCCcCCCcceeEEEEEeecc-ceeEecCCCcee
Confidence 9987654221 234688999995 55553333332 22222 23445666665 32 22333222 1
Q ss_pred CCCCCCcCCceEEEcCCCcEE-EEEEe
Q 011114 302 RPHGFDSRDMTIFKDDDGVAY-LVYSS 327 (493)
Q Consensus 302 ~p~g~~siDPsvF~DdDGk~Y-L~~g~ 327 (493)
.-.|.++.=|..|.|+||+.+ +-|.+
T Consensus 274 LD~G~DfYApQtf~~~dgrri~igWmg 300 (486)
T COG1621 274 LDFGFDFYAPQTFLDPDGRRILIGWMG 300 (486)
T ss_pred cccCccccceeeccCCCCCEEEEEecc
Confidence 124677788889998888854 44444
No 74
>PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety. On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B.
Probab=97.19 E-value=0.0085 Score=61.83 Aligned_cols=144 Identities=17% Similarity=0.248 Sum_probs=83.0
Q ss_pred CCeeeeceEEEEccCCE--EEEEEEEeCCCCCcceEEEEEeCCCCCCceeccc--CCCC----CCCcCCceEEEcCCCcE
Q 011114 250 LNVLERPKVIYNDRTGK--YVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYS--KRPH----GFDSRDMTIFKDDDGVA 321 (493)
Q Consensus 250 ~~~iWAP~Viyn~~~Gk--Yylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~--~~p~----g~~siDPsvF~DdDGk~ 321 (493)
...+.-|.++. .+|+ ++|.|-+........+||+|.|++.. .|+.... ..|. -.+.=||-|.+- ||++
T Consensus 29 ~~~vfNpgai~--~~~~~R~~l~yr~~~~~~~~~~iglA~S~DGi-~f~~~~~pil~P~~~~e~~GvEDPRVt~i-~d~y 104 (312)
T PF04041_consen 29 PNAVFNPGAIV--FDGGLRVYLLYRAYGSDIGSSRIGLARSDDGI-HFERDPEPILYPDTDYEEWGVEDPRVTKI-DDTY 104 (312)
T ss_dssp SSEEEEEEEEE--ETTE--EEEEEEEEESSSSEEEEEEEEESSSS-S-EE-SS-SBEE-SSTTHTEEEEEEEEEE-TTEE
T ss_pred cceEEcCcEEE--ECCeeEEEEEEEeECCCCceeEEEEEEccCCc-CceECCCCEEccCCCCcccCccceeEEEE-CCEE
Confidence 35678888885 4555 88877766544344599999999874 4664321 1111 134679999986 5689
Q ss_pred EEEEEecCCC--ceEEEEcCCCCCCccccEEEeecC-c----------eeeeeEEEEECCEEEEEEeCCCCCCCCcEEEE
Q 011114 322 YLVYSSEDNS--ELHIGPLTSDYLDVSNVVRRILVG-Q----------HREAPALFKHLGTYYMVTSGCTGWAPNEALVH 388 (493)
Q Consensus 322 YL~~g~~~n~--~i~iaeLs~D~~~~~g~~~~i~~g-~----------~~EgP~i~K~~G~YYL~yS~~tg~~~n~~v~~ 388 (493)
||+|.+.+.. .+.++ .+.|..+++-.. .++.. . -.-+.+.-|.||+|+|++-. + ..-.+
T Consensus 105 ymtYta~~~~~~~~~la-~s~D~~~~~r~g-~~~~~~~~~~~~~~~~~kd~~lfp~ki~Gky~m~~r~-----~-~i~la 176 (312)
T PF04041_consen 105 YMTYTAYSGKGPRIGLA-TSKDFKHWERHG-KIFPPFNGNEDYRDFWSKDGALFPEKINGKYAMLHRD-----P-SIWLA 176 (312)
T ss_dssp EEEEEEEESSSEEEEEE-EESSSSSEEEEE-CTTTTTCTS-EEEEEEEECCEEEESEETTEEEEEEES-----S-SBEEE
T ss_pred EEEEEEecCCCcccceE-EccchHhhEEec-cccCcccccccccccccCceEEEEEEECCEEEEEECC-----C-CEEEE
Confidence 9999986433 23344 367877764211 01100 0 11122223679999999972 1 22234
Q ss_pred EECCCCCCceeCCCcccc
Q 011114 389 AAESIMGPWEDMGNPCIG 406 (493)
Q Consensus 389 ~Sdsp~GPwt~~g~Pv~~ 406 (493)
.|++.. .|+...+++..
T Consensus 177 ~S~Dl~-~W~~~~~~~~~ 193 (312)
T PF04041_consen 177 YSPDLI-HWGNHREPLLS 193 (312)
T ss_dssp EESSSS-SEEEEBETSB-
T ss_pred ecCCcc-ccccccccccc
Confidence 577665 48876554443
No 75
>PF02435 Glyco_hydro_68: Levansucrase/Invertase; InterPro: IPR003469 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family consists of the glycosyl hydrolase 68 family (GH68 from CAZY), including several bacterial levansucrase enzymes, and invertase from Zymomonas. Levansucrase (2.4.1.10 from EC), also known as beta-D-fructofuranosyl transferase, catalyses the conversion of sucrose and (2,6-beta-D-fructosyl)(N) to glucose and (2,6-beta-D-fructosyl)(N+1), where other sugars can also act as fructosyl acceptors. Invertase, or extracellular sucrase (3.2.1.26 from EC), catalyses the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides.; GO: 0050053 levansucrase activity, 0009758 carbohydrate utilization; PDB: 2YFR_A 2YFT_A 2YFS_A 1W18_A 3OM7_B 3OM4_C 3OM6_D 3OM5_A 3OM2_A 1PT2_A ....
Probab=96.67 E-value=0.0091 Score=63.67 Aligned_cols=188 Identities=15% Similarity=0.166 Sum_probs=97.2
Q ss_pred cchhhhhhccccCCCCCC--CCCChhhhcCCCcccceeeecccC-CcceEEeecCCCCCCCCCC--CcCC----------
Q 011114 91 RELVEVEEENIQIPPPRG--KRSPRAAKRRPKRTTTLIDEFLDE-NSQLRHVFFPDMKTAIDPM--KDNG---------- 155 (493)
Q Consensus 91 ~~l~~~~~~~~~~p~~~~--~~~p~~~~~~~~~~~~~v~~~~~~-~p~v~~~~~p~~~~aaDP~--~~~~---------- 155 (493)
.++-+|...|-.+|..-. -.+-.|.= ...+.+ +..|+..||.-- ....|. ..+.
T Consensus 108 ~~~~~W~~~G~vf~~g~~~~~~s~EWSG----------SA~l~~~dg~I~LfYTav~-~~~~~~~~Q~l~t~~~g~~~~d 176 (428)
T PF02435_consen 108 NANDGWKNGGPVFPEGASFVPGSREWSG----------SATLNNDDGSIQLFYTAVG-FSDTPTFRQRLATATLGLIHAD 176 (428)
T ss_dssp -SGGG-EEEEESS-TTCCCCGCEEEEEE----------EEEESTTTSEEEEEEEEEE-EETTTTTEEEEEEEEEEEEEEC
T ss_pred CccCCceECcccCCCCCCCCccCcEecC----------ceEEcCCCCeEEEEEeecc-cCCCcchhhhhhhHhcCeeecC
Confidence 347799999988888632 12224442 233333 677788787100 001333 1111
Q ss_pred CCeEEee---cCCceeCCCCCcEEe---------eCCceEEECCCCEEEEEEEecCCCcccccccccc------------
Q 011114 156 NDSFYYY---PGRIWLDTEGAPIQA---------HGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAA------------ 211 (493)
Q Consensus 156 ~~~~yi~---pG~~w~dt~G~pI~a---------hgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~------------ 211 (493)
++.+.|- .-+....-+|...+. +||.++.++.+|+-||+-+...+......-+|..
T Consensus 177 ~~~v~i~g~~~~~~lfe~DG~~Yqt~~Q~~~~afRDP~~f~DP~~G~~YLvFEgNtg~~~~~~~~g~~d~~~~~~~~~~~ 256 (428)
T PF02435_consen 177 DDGVWITGFSNHHELFEGDGKHYQTYEQNPGYAFRDPHVFEDPEDGKRYLVFEGNTGGERNWANYGGDDLGNVPGDPKLE 256 (428)
T ss_dssp STEEEEEEEEEEEEEES--SSSB--HHHHHH---EEEEEEEETTTTEEEEEEEEEBSTTSBGGGT-SHHHHHHHHHHHHH
T ss_pred CCceeEccccceeEeeccchhhhhChhhcCCccccCCeeEECCCCCcEEEEEecccCCCCCccccCcccccccccccccc
Confidence 1223321 112233344544432 6889999977788888777643321111111100
Q ss_pred --------ccccCcEEEEEe--CCCCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCC---
Q 011114 212 --------RVDIIGVGCYSS--KDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNY--- 278 (493)
Q Consensus 212 --------~~~~~gi~v~sS--~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~~--- 278 (493)
......|.+.+. +++..|+....+|..... ...+++|.|+. .+||||||.......+
T Consensus 257 ~~~~~~~A~~~ng~iGi~~~~~~~~~~w~~~~PL~~a~~v--------~de~ERP~iv~--~~gkyYLFt~s~~~~~a~g 326 (428)
T PF02435_consen 257 NNDNKSGASYANGAIGIAKLTNDDGTVWELLPPLLSANGV--------NDELERPHIVF--MNGKYYLFTISHLSTFADG 326 (428)
T ss_dssp HSCCHHHHHH-EEEEEEEEESTTTTSEEEEEEEEEEETTT--------BS-EEEEEEEE--ETTEEEEEEEEEGGGBSTT
T ss_pred ccccccccceecceeeeEEecCCCCCccEEeCcceecccc--------cccccCCcEEE--ECCEEEEEEEeccccccCC
Confidence 011223555554 445579988877765433 46799999996 9999999998864211
Q ss_pred --CcceEEEEE-eCCCCCCceecc
Q 011114 279 --TKAAVGVAI-SDYPTGPFDYLY 299 (493)
Q Consensus 279 --~~~~IGVA~-SdsP~GPf~~~~ 299 (493)
+.-.+...+ +++..|||+++.
T Consensus 327 ~~g~d~~yg~~~~~~L~g~y~PLN 350 (428)
T PF02435_consen 327 IVGPDGVYGFVVSDSLRGPYKPLN 350 (428)
T ss_dssp HHTTSEEEEEEEESSTTS--EEGC
T ss_pred ccCCCeEEEEEECccccCCceecC
Confidence 122334444 445999999875
No 76
>KOG0228 consensus Beta-fructofuranosidase (invertase) [Carbohydrate transport and metabolism]
Probab=96.08 E-value=0.033 Score=60.22 Aligned_cols=152 Identities=17% Similarity=0.176 Sum_probs=86.2
Q ss_pred hheeeeeeccCCCCcceeeEEecCccccchhhhhhccccCCCCCCCCCChhhhcCCCccc----------c--eeeeccc
Q 011114 64 LHFFSLVSHKDGTSGEIELHISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTT----------T--LIDEFLD 131 (493)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~----------~--~v~~~~~ 131 (493)
-|||.-+..+...-++ .+=-|..|.||++||....||=|- +|.. -+..|. | +..-+..
T Consensus 72 yHLFyQyNP~gavwg~---ivWGHavSkDLinW~~lp~Ai~Ps------~~~d-ing~wSGSati~~~~~~vilytg~d~ 141 (571)
T KOG0228|consen 72 YHLFYQYNPKGAVWGN---IVWGHAVSKDLINWEALPPAIAPS------EWFD-INGCWSGSATIDPNNSPVILYTGIDP 141 (571)
T ss_pred EEEEEecCCCCceeee---eEeeeecchhhccccccCcccCCC------Cccc-cCccccceEEEccCCCeEEEecccCc
Confidence 4666666666654433 345689999999999999999664 4543 233332 2 1111212
Q ss_pred CCcceEEeecCCCCCCCCCCCcCCCCeEEeecCCceeCCCCCcEEe------------eCCceEEECCCCEEEEEEEecC
Q 011114 132 ENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPGRIWLDTEGAPIQA------------HGGGILYDERSRTYFWYGEYKD 199 (493)
Q Consensus 132 ~~p~v~~~~~p~~~~aaDP~~~~~~~~~yi~pG~~w~dt~G~pI~a------------hgg~Ii~~~~~g~YY~ygT~~~ 199 (493)
++-+|...-.|... +||-.. - |.-..|+|+.. +||.......+|+|=|.--.+.
T Consensus 142 ~~rqVqn~a~p~d~--sdp~l~-----~-------w~k~~gnp~~~p~~V~~in~s~FRDPttaW~~~dgkWrm~vgsk~ 207 (571)
T KOG0228|consen 142 NNRQVQNYAYPKDV--SDPQLI-----A-------WSKDGGNPFMKPDKVLGINSSQFRDPTTAWFGQDGKWRMTVGSKI 207 (571)
T ss_pred CceEEEEEeccCCC--Cchhhh-----e-------eecCCCceeeccccccCCChhhccCCceeeecCCCcEEEEEEeec
Confidence 23344433333332 555443 1 22333333322 5677776666777766543331
Q ss_pred CCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeeeeceEEE
Q 011114 200 GPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIY 260 (493)
Q Consensus 200 ~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~Viy 260 (493)
. .-..+-+|+|+|+++|+.....+...+- +.+-+.|+.+.
T Consensus 208 ~-------------q~g~a~~Y~S~Df~~W~k~~~~~h~~~~--------tgmwECPdffp 247 (571)
T KOG0228|consen 208 K-------------QRGKAIIYSSDDFKHWTKSSVPLHSGDL--------TGMWECPDFFP 247 (571)
T ss_pred C-------------ccceEEEEeccchhhhhcccccccccCc--------cceEECCCcEE
Confidence 1 1124668999999999998877665432 34456677664
No 77
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism]
Probab=95.86 E-value=0.36 Score=49.44 Aligned_cols=179 Identities=15% Similarity=0.108 Sum_probs=106.7
Q ss_pred cCcEEEEEeCCCCC-CEEece-eccC-CCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCC
Q 011114 215 IIGVGCYSSKDMWT-WKNEGI-VLAA-EETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYP 291 (493)
Q Consensus 215 ~~gi~v~sS~DLvn-Wt~~G~-vL~~-~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP 291 (493)
...+.+..|+|+.+ |+.+.. ++-+ .. ....-+++-|-|.+ .+++|||-|++.+. .+.++++|++.+-
T Consensus 60 ~s~l~ia~s~dgi~~~~~e~ep~~~P~~~------~~e~~G~EDPRvt~--I~~~y~mtYTa~s~--~g~~~~la~t~~f 129 (314)
T COG2152 60 ISHLRIARSDDGIGEFEIEPEPTLWPANY------PYEIYGIEDPRVTK--IGGRYYMTYTAYSD--KGPRLALAVTKDF 129 (314)
T ss_pred ceEEEEEecccCCCceecCCcceEecCCC------chhhhcccCceEEE--ECCEEEEEEEecCC--CCcccchhhhhhh
Confidence 34578888999999 997653 3322 21 12345688999997 99999999998633 3578889999886
Q ss_pred CCCceecccCCCCCCCcCCceEEEc-CCCcEEEEEEec----C-CCceEEEEcCCCCCCccccEEEeec---C-----ce
Q 011114 292 TGPFDYLYSKRPHGFDSRDMTIFKD-DDGVAYLVYSSE----D-NSELHIGPLTSDYLDVSNVVRRILV---G-----QH 357 (493)
Q Consensus 292 ~GPf~~~~~~~p~g~~siDPsvF~D-dDGk~YL~~g~~----~-n~~i~iaeLs~D~~~~~g~~~~i~~---g-----~~ 357 (493)
.. |+..+...+. ...|..+|-- -+|++.|+..-- . ..+++++- |+|+.++......+.. + ..
T Consensus 130 ~n-~~rig~i~~p--dn~~~~lfP~~~ngk~~~lhr~~~~~~~~~~niwia~-S~dl~~w~~~~~~l~~~~~~~~d~~KI 205 (314)
T COG2152 130 LN-WERIGAIFPP--DNKDAALFPKKINGKYALLHRPVLGEYGMKGNIWIAF-SPDLEHWGIHRKLLGPRMGGWWDELKI 205 (314)
T ss_pred hh-hhhcccccCC--CCCCceEeeEEecCcEEEEEeecccccCccCceEEEE-cCCccCCCccceeeccccCCcchhhhc
Confidence 65 8876654333 4677777754 377877765421 1 34677765 7888887655443321 1 11
Q ss_pred eeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEECCCCCCceeC---CCccccC
Q 011114 358 REAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDM---GNPCIGG 407 (493)
Q Consensus 358 ~EgP~i~K~~G~YYL~yS~~tg~~~n~~v~~~Sdsp~GPwt~~---g~Pv~~~ 407 (493)
-=||..+|-..-+-++|-+.+.....|.++++==++.+|..-. .+|++++
T Consensus 206 G~g~~Pikt~egwLvlyHgv~~~~~~Yr~GaALlDledp~kvl~rS~~~IleP 258 (314)
T COG2152 206 GWGTPPIKTEEGWLVLYHGVDETLTVYRLGAALLDLEDPTKVLARSPEYILEP 258 (314)
T ss_pred cCCCCCcCcccceEEEEeeccCccceEEeeeEEEcCCCCcEEEecCCccccCc
Confidence 2244455543335555543221111355555544556665533 4566654
No 78
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=95.12 E-value=3.8 Score=40.41 Aligned_cols=196 Identities=14% Similarity=0.074 Sum_probs=106.5
Q ss_pred CCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCC-CCCCEEeceeccCCCcccccccCCCCeeeece
Q 011114 179 GGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKD-MWTWKNEGIVLAAEETNETHDLYKLNVLERPK 257 (493)
Q Consensus 179 gg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~D-LvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~ 257 (493)
++.++.+. +|+.+++.+...... .|. ...+..+.|+| ..+|+....+...... .........
T Consensus 50 ~p~~~~~~-~g~l~l~~~~~~~~~---~~~------~~~~~~~~S~D~G~TWs~~~~l~~~~~~-------~~~~~~~~~ 112 (275)
T PF13088_consen 50 NPSLVVDP-DGRLWLFYSAGSSGG---GWS------GSRIYYSRSTDGGKTWSEPTDLPPGWFG-------NFSGPGRGP 112 (275)
T ss_dssp EEEEEEET-TSEEEEEEEEEETTE---SCC------TCEEEEEEESSTTSS-EEEEEEHHHCCC-------SCEECSEEE
T ss_pred CcEEEEeC-CCCEEEEEEEccCCC---CCC------ceeEEEEEECCCCCCCCCcccccccccc-------ceeccceee
Confidence 34556655 688888763321100 011 11222355655 8899998755432111 011122222
Q ss_pred -EEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCCCCCCCcCCceEEEcCCCcEEEEEEecCCCceEEE
Q 011114 258 -VIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIG 336 (493)
Q Consensus 258 -Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~siDPsvF~DdDGk~YL~~g~~~n~~i~ia 336 (493)
+.. .+|+.++-+.... .....+.+..|++---.|+..... +......-|+++.+.||+.++++....+..+.++
T Consensus 113 ~i~~--~~G~l~~~~~~~~--~~~~~~~~~~S~D~G~tW~~~~~~-~~~~~~~e~~~~~~~dG~l~~~~R~~~~~~~~~~ 187 (275)
T PF13088_consen 113 PIQL--PDGRLIAPYYHES--GGSFSAFVYYSDDGGKTWSSGSPI-PDGQGECEPSIVELPDGRLLAVFRTEGNDDIYIS 187 (275)
T ss_dssp EEEE--CTTEEEEEEEEES--SCEEEEEEEEESSTTSSEEEEEEC-ECSEEEEEEEEEEETTSEEEEEEEECSSTEEEEE
T ss_pred eeEe--cCCCEEEEEeecc--ccCcceEEEEeCCCCceeeccccc-cccCCcceeEEEECCCCcEEEEEEccCCCcEEEE
Confidence 333 5888877543331 134677888888855558754321 1223567888998999999999887422456666
Q ss_pred EcCCCCCCccccEEEeecCceeeeeEEEE-ECCEEEEEEeCCCCCCCCcEEE-EEECCCCCCceeC
Q 011114 337 PLTSDYLDVSNVVRRILVGQHREAPALFK-HLGTYYMVTSGCTGWAPNEALV-HAAESIMGPWEDM 400 (493)
Q Consensus 337 eLs~D~~~~~g~~~~i~~g~~~EgP~i~K-~~G~YYL~yS~~tg~~~n~~v~-~~Sdsp~GPwt~~ 400 (493)
.-++...+|.. +..+.......++.+++ .+|..+|++....+ ...+. +.|.+=---|+..
T Consensus 188 ~S~D~G~TWs~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---r~~l~l~~S~D~g~tW~~~ 249 (275)
T PF13088_consen 188 RSTDGGRTWSP-PQPTNLPNPNSSISLVRLSDGRLLLVYNNPDG---RSNLSLYVSEDGGKTWSRP 249 (275)
T ss_dssp EESSTTSS-EE-EEEEECSSCCEEEEEEECTTSEEEEEEECSST---SEEEEEEEECTTCEEEEEE
T ss_pred EECCCCCcCCC-ceecccCcccCCceEEEcCCCCEEEEEECCCC---CCceEEEEEeCCCCcCCcc
Confidence 65666777754 33333333446666666 47899999983222 23333 3455433357653
No 79
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism]
Probab=94.21 E-value=6.8 Score=40.39 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=74.1
Q ss_pred eeeeceEEEEccCCEEEEEEEE-----eCCCCCcceEEEEEeCCCCCCceeccc--CCC-C----CCCcCCceEEEcCCC
Q 011114 252 VLERPKVIYNDRTGKYVMWMHI-----DDCNYTKAAVGVAISDYPTGPFDYLYS--KRP-H----GFDSRDMTIFKDDDG 319 (493)
Q Consensus 252 ~iWAP~Viyn~~~GkYylyfs~-----~~~~~~~~~IGVA~SdsP~GPf~~~~~--~~p-~----g~~siDPsvF~DdDG 319 (493)
.+..|.|+. .++++.|++-+ .+.. ..+++++|.|++--+.|+.... ..| . -++.=||-|++- ||
T Consensus 30 ~vFNpav~~--~~~~~~~l~Rv~~~yye~~~-~~s~l~ia~s~dgi~~~~~e~ep~~~P~~~~~e~~G~EDPRvt~I-~~ 105 (314)
T COG2152 30 SVFNPAVVL--VGGELLLLYRVVEGYYEDHS-SISHLRIARSDDGIGEFEIEPEPTLWPANYPYEIYGIEDPRVTKI-GG 105 (314)
T ss_pred EEecceeEE--ECCEEEEEEEEeccccccCc-cceEEEEEecccCCCceecCCcceEecCCCchhhhcccCceEEEE-CC
Confidence 688899997 89999999988 3322 4688999999987665774321 234 2 135669999874 68
Q ss_pred cEEEEEEecCC-CceEEEEcCCCCCCccccEEEeecCceeeeeEE--EEECCEEEEEE
Q 011114 320 VAYLVYSSEDN-SELHIGPLTSDYLDVSNVVRRILVGQHREAPAL--FKHLGTYYMVT 374 (493)
Q Consensus 320 k~YL~~g~~~n-~~i~iaeLs~D~~~~~g~~~~i~~g~~~EgP~i--~K~~G~YYL~y 374 (493)
++||.|.+... +.....-++.|..+|.-... +... ..-.-.+ .|.+|+|+|+-
T Consensus 106 ~y~mtYTa~s~~g~~~~la~t~~f~n~~rig~-i~~p-dn~~~~lfP~~~ngk~~~lh 161 (314)
T COG2152 106 RYYMTYTAYSDKGPRLALAVTKDFLNWERIGA-IFPP-DNKDAALFPKKINGKYALLH 161 (314)
T ss_pred EEEEEEEecCCCCcccchhhhhhhhhhhhccc-ccCC-CCCCceEeeEEecCcEEEEE
Confidence 99999998432 22233345667766542211 1111 1111112 26799999986
No 80
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=94.06 E-value=3.2 Score=40.94 Aligned_cols=172 Identities=14% Similarity=0.094 Sum_probs=96.5
Q ss_pred cCcEEEEEe--CCC-CCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCC--CCCcceEEEEEeC
Q 011114 215 IIGVGCYSS--KDM-WTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDC--NYTKAAVGVAISD 289 (493)
Q Consensus 215 ~~gi~v~sS--~DL-vnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~--~~~~~~IGVA~Sd 289 (493)
..++.++.| +|. .+|+....+..... .....+-|.+++++ +|+.+|+|..... ......+...+|+
T Consensus 15 ~~d~~i~~S~s~D~G~tWs~~~~v~~~~~--------~~~~~~~p~~~~~~-~g~l~l~~~~~~~~~~~~~~~~~~~~S~ 85 (275)
T PF13088_consen 15 AIDIVIRRSRSTDGGKTWSEPRIVADGPK--------PGRRYGNPSLVVDP-DGRLWLFYSAGSSGGGWSGSRIYYSRST 85 (275)
T ss_dssp CEEEEEEEECCCCCTTEEEEEEEEETSTB--------TTCEEEEEEEEEET-TSEEEEEEEEEETTESCCTCEEEEEEES
T ss_pred CCCEEEEEEEeeCCCCeeCCCEEEeeccc--------cCCcccCcEEEEeC-CCCEEEEEEEccCCCCCCceeEEEEEEC
Confidence 356888888 887 56999988776541 24568899999865 9999999855432 1234555568888
Q ss_pred CCCCCceecccCCC--CC--CCcCCceEEEcCCCcEEEEEEecC--CCceEEEEcCCCCCCccccEEEeecC-ceeeeeE
Q 011114 290 YPTGPFDYLYSKRP--HG--FDSRDMTIFKDDDGVAYLVYSSED--NSELHIGPLTSDYLDVSNVVRRILVG-QHREAPA 362 (493)
Q Consensus 290 sP~GPf~~~~~~~p--~g--~~siDPsvF~DdDGk~YL~~g~~~--n~~i~iaeLs~D~~~~~g~~~~i~~g-~~~EgP~ 362 (493)
|---.|+......+ .. .......+++-.||+.++.+.... +....+..-++...+|... ..+... ...|...
T Consensus 86 D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~-~~~~~~~~~~e~~~ 164 (275)
T PF13088_consen 86 DGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSG-SPIPDGQGECEPSI 164 (275)
T ss_dssp STTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEE-EECECSEEEEEEEE
T ss_pred CCCCCCCCccccccccccceeccceeeeeEecCCCEEEEEeeccccCcceEEEEeCCCCceeecc-ccccccCCcceeEE
Confidence 74346886532110 11 112233234446998888653321 1233333334445554322 111122 3455555
Q ss_pred EEEECCEEEEEEeCCCCCCCCcEEEEEECCCCCCcee
Q 011114 363 LFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWED 399 (493)
Q Consensus 363 i~K~~G~YYL~yS~~tg~~~n~~v~~~Sdsp~GPwt~ 399 (493)
+...+|..++++-.. +- .....+.|++--.-|+.
T Consensus 165 ~~~~dG~l~~~~R~~-~~--~~~~~~~S~D~G~TWs~ 198 (275)
T PF13088_consen 165 VELPDGRLLAVFRTE-GN--DDIYISRSTDGGRTWSP 198 (275)
T ss_dssp EEETTSEEEEEEEEC-SS--TEEEEEEESSTTSS-EE
T ss_pred EECCCCcEEEEEEcc-CC--CcEEEEEECCCCCcCCC
Confidence 556689999998653 11 13344457665446886
No 81
>COG3940 Predicted beta-xylosidase [General function prediction only]
Probab=93.41 E-value=5.4 Score=39.21 Aligned_cols=180 Identities=14% Similarity=0.187 Sum_probs=98.0
Q ss_pred CCCcccceeeecccCCcceEEeecCCCCCCCCCCC----cCCCCeEEeecCCceeCCCCCcEE------e-----eCCce
Q 011114 118 RPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMK----DNGNDSFYYYPGRIWLDTEGAPIQ------A-----HGGGI 182 (493)
Q Consensus 118 ~~~~~~~~v~~~~~~~p~v~~~~~p~~~~aaDP~~----~~~~~~~yi~pG~~w~dt~G~pI~------a-----hgg~I 182 (493)
....|||++... |...+-.|. |.|++ ..|+-++++---.+-....|+-+. + -|..+
T Consensus 67 s~liwapeih~i---ngkwyiyfa------aa~ta~~k~g~f~hrmfvlene~anpltg~w~ekgqikt~wesfsldatt 137 (324)
T COG3940 67 SNLIWAPEIHFI---NGKWYIYFA------AAPTANIKDGTFNHRMFVLENENANPLTGNWVEKGQIKTAWESFSLDATT 137 (324)
T ss_pred hhcccccceeEE---cceEEEEEe------ecCcccccccccceeEEEEecCCCCCCcccceecceeccchhcceeeeee
Confidence 347899999888 777444343 44443 335666666433222222233221 1 13333
Q ss_pred EEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEec--eeccCCCcccccccCCCCeee---ece
Q 011114 183 LYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEG--IVLAAEETNETHDLYKLNVLE---RPK 257 (493)
Q Consensus 183 i~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G--~vL~~~~~~~~~~~~~~~~iW---AP~ 257 (493)
... .+..||+.++-+..- .| ...|-+.+.++ .|+-.| +.|...+..|. -.++| .|.
T Consensus 138 feh-~gk~yyvwaqkdp~i------~g-----nsniyiaemen--pwtikgepvmlskpe~dwe-----~~gfwvnegpa 198 (324)
T COG3940 138 FEH-NGKLYYVWAQKDPNI------KG-----NSNIYIAEMEN--PWTIKGEPVMLSKPELDWE-----IKGFWVNEGPA 198 (324)
T ss_pred eee-CCEEEEEEeccCCCc------cC-----CcceEEEeccC--CceecCceEEecCCCcccE-----EEEEEecCCce
Confidence 333 456788877644311 11 22355655554 577666 45555554442 23344 689
Q ss_pred EEEEccCCEEEEEEEEeCCCCCcceEEEEEeC---CCCCC--ceeccc------CCCCCCCcCCceEEEcCCCcE-EEEE
Q 011114 258 VIYNDRTGKYVMWMHIDDCNYTKAAVGVAISD---YPTGP--FDYLYS------KRPHGFDSRDMTIFKDDDGVA-YLVY 325 (493)
Q Consensus 258 Viyn~~~GkYylyfs~~~~~~~~~~IGVA~Sd---sP~GP--f~~~~~------~~p~g~~siDPsvF~DdDGk~-YL~~ 325 (493)
|+. ++||-++-|+++..+ ...|+|+..+. ++..| |+.... .....++...-++-+.+||+. -|+|
T Consensus 199 v~k--~ngkifi~ysasatd-~nycmgllwanen~dlldpaswtksptpvf~ts~en~qygpghnsftvtedgkhdvlvy 275 (324)
T COG3940 199 VLK--KNGKIFITYSASATD-VNYCMGLLWANENSDLLDPASWTKSPTPVFKTSMENHQYGPGHNSFTVTEDGKHDVLVY 275 (324)
T ss_pred EEE--ECCEEEEEEeccccc-cceeeeeeeecccCCcCCchhcccCCCcceeeehhccccCCCCCceEecCCCcccEEEE
Confidence 995 999999999987654 35799998874 33333 443211 001113334455566688864 6777
Q ss_pred Eec
Q 011114 326 SSE 328 (493)
Q Consensus 326 g~~ 328 (493)
...
T Consensus 276 har 278 (324)
T COG3940 276 HAR 278 (324)
T ss_pred ecc
Confidence 653
No 82
>PF13810 DUF4185: Domain of unknown function (DUF4185)
Probab=93.16 E-value=12 Score=38.82 Aligned_cols=168 Identities=22% Similarity=0.389 Sum_probs=88.8
Q ss_pred cCCE-EEEEEEEeCCC-----CCcceEEEEEeCCCCCCceeccc-CCCC-----CCC----cCCceEEEcCCCcEEEEEE
Q 011114 263 RTGK-YVMWMHIDDCN-----YTKAAVGVAISDYPTGPFDYLYS-KRPH-----GFD----SRDMTIFKDDDGVAYLVYS 326 (493)
Q Consensus 263 ~~Gk-Yylyfs~~~~~-----~~~~~IGVA~SdsP~GPf~~~~~-~~p~-----g~~----siDPsvF~DdDGk~YL~~g 326 (493)
.+++ |+.|++.+.-+ +....-++|.|++.-..|+.... ..+. |.. ..=+.-|..+||-.|++=.
T Consensus 103 v~~~~Yl~~msv~~wg~~~G~W~tn~S~i~~S~D~G~tW~~~~~~~~~~~~~~~g~~~~~~~fq~~a~~~~dgyVYv~gt 182 (316)
T PF13810_consen 103 VGGRQYLHYMSVRNWGNVPGSWTTNYSGIAYSDDNGETWTVVPGTIRPNSPFHPGFNQGNWNFQMAAFVKDDGYVYVYGT 182 (316)
T ss_pred ECCcEEEEEEEEccCCCCCCccccCceEEEEeCCCCCCceeCCCcccccccccCCccccccccccccccCCCCEEEEEeC
Confidence 4555 44455554321 22335789999997777887642 1111 111 1112234446777777644
Q ss_pred ecC-CCceEEEEcCCCCC----C---cccc----------EEEeecCceeeeeEEEE-ECCEEEEEEeCCCCCCCCcEEE
Q 011114 327 SED-NSELHIGPLTSDYL----D---VSNV----------VRRILVGQHREAPALFK-HLGTYYMVTSGCTGWAPNEALV 387 (493)
Q Consensus 327 ~~~-n~~i~iaeLs~D~~----~---~~g~----------~~~i~~g~~~EgP~i~K-~~G~YYL~yS~~tg~~~n~~v~ 387 (493)
..+ ++.+++++..++-+ . +.+. .+.|+.+..-|.....- +.|+|.|+|-.. .+..+.
T Consensus 183 ~~~R~g~~~LaRV~~~~i~d~~ayeyw~g~~~~W~~~~~~atpv~~~~vgElSv~~~~~~gk~Vl~~~~~----~~~~I~ 258 (316)
T PF13810_consen 183 PFGRNGGVYLARVPPDDILDRSAYEYWDGSGGGWSWGNPPATPVLPGPVGELSVRYNEYLGKWVLSYFDA----GTGGIV 258 (316)
T ss_pred CCCCCCcEEEEEeCHHHCCChhhccccCCCCcccccCCCCccccccCCccceEEEEeCCCCEEEEEEecc----cCCcEE
Confidence 322 46788888765311 1 1111 13445555667644432 489999999753 124444
Q ss_pred -EEECCCCCCceeCCCccccCCccceeeccCCCceEEEcccCCcc-cEEEEEeEeC
Q 011114 388 -HAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPG-LYIFMADRWN 441 (493)
Q Consensus 388 -~~Sdsp~GPwt~~g~Pv~~~~~~~~~~t~gsq~~~V~~~~G~~~-~yi~y~d~w~ 441 (493)
.+|++|.|||+.....+... . ..+-.+++|.|-.-..+ .|+++ -.|+
T Consensus 259 ~RtA~~P~GpWs~~~~l~~~~-~-----~~~lYggyihP~s~~g~~L~~~v-S~W~ 307 (316)
T PF13810_consen 259 LRTAPSPTGPWSEPKPLVTVE-E-----VPQLYGGYIHPWSTSGDDLYFVV-SQWN 307 (316)
T ss_pred EEecCCCCCCCCCCeeEEeCC-c-----CCcceeeEeCCCccCCCCEEEEE-EEcc
Confidence 46999999999653222211 1 11223357776542223 45444 6776
No 83
>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process
Probab=88.36 E-value=26 Score=35.21 Aligned_cols=172 Identities=12% Similarity=0.153 Sum_probs=93.5
Q ss_pred eeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCCC--CCCCcCCceEEEc-CCCcEEEEEEecC
Q 011114 253 LERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRP--HGFDSRDMTIFKD-DDGVAYLVYSSED 329 (493)
Q Consensus 253 iWAP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p--~g~~siDPsvF~D-dDGk~YL~~g~~~ 329 (493)
+=-|.+++ .||||++|.+..+...+-..+... +.-.|.++.+... .....-=|.||.= +...+||+|- |+
T Consensus 25 lKD~T~V~--ynGk~~VyAtt~d~~~~y~sm~f~----~Ftdws~~~sA~q~~m~~~~vAP~vFYFaPk~~W~L~yQ-wg 97 (271)
T PF03664_consen 25 LKDFTIVP--YNGKHHVYATTADTGGGYGSMNFG----PFTDWSQMASASQNYMDQSAVAPQVFYFAPKNIWYLAYQ-WG 97 (271)
T ss_pred ccCceEEe--ECCEEEEEEEeccCCCccceEeee----ccCCHHHhhccccccCCcccccceEEEecCCcEEEEEEe-cC
Confidence 34488886 899999999876432111122221 1112333322111 1223567888764 6778899997 43
Q ss_pred CCceEEEEcCCCCCCccc--cEEEeecC------ceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEECCCCCCceeC-
Q 011114 330 NSELHIGPLTSDYLDVSN--VVRRILVG------QHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDM- 400 (493)
Q Consensus 330 n~~i~iaeLs~D~~~~~g--~~~~i~~g------~~~EgP~i~K~~G~YYL~yS~~tg~~~n~~v~~~Sdsp~GPwt~~- 400 (493)
+ .....+-+.|-....| .++.++.+ ...=..+|+-.+-.-|||+++.. .. .|+|.-+.|.|-..
T Consensus 98 ~-~~fsY~Ts~DptnpngWSapq~lf~g~i~~~~~g~iD~~vI~D~~n~yLFfa~Dn-----Gk-iYRs~~~i~nFP~~f 170 (271)
T PF03664_consen 98 P-AAFSYSTSSDPTNPNGWSAPQPLFSGSISGSGTGPIDQWVICDDTNMYLFFAGDN-----GK-IYRSSMPIGNFPGGF 170 (271)
T ss_pred C-CcceeecCCCCCCCccCCCCcccccccccCCCCCceeeEEEecCCceEEEEcCCC-----Cc-EEEeccchhhCCCCC
Confidence 2 2233455666555432 23333222 12234567777888999998533 22 56877777766544
Q ss_pred C-Cc--cccCCccceeeccCCCceEEEcccCCcccEEEEEeEeCCCC
Q 011114 401 G-NP--CIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPAD 444 (493)
Q Consensus 401 g-~P--v~~~~~~~~~~t~gsq~~~V~~~~G~~~~yi~y~d~w~~~~ 444 (493)
| ++ ++.... ..-|- ...|-+++| ++.||++-.+..+++
T Consensus 171 gs~~~vvmsd~~---~nLFE--A~~VYkv~G-~~~YLmiVEaiGs~g 211 (271)
T PF03664_consen 171 GSSYTVVMSDTR---NNLFE--AVQVYKVKG-QNQYLMIVEAIGSDG 211 (271)
T ss_pred CCceEEEEecCc---cceee--eeEEEEEcC-CceEEEEEEEecCCC
Confidence 3 22 222111 12222 245778888 456888888887643
No 84
>PF13810 DUF4185: Domain of unknown function (DUF4185)
Probab=69.13 E-value=7 Score=40.56 Aligned_cols=68 Identities=21% Similarity=0.166 Sum_probs=43.9
Q ss_pred ceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccC-----CCCC-CCcCCceEEEcCCCcEEEEEEecC
Q 011114 256 PKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSK-----RPHG-FDSRDMTIFKDDDGVAYLVYSSED 329 (493)
Q Consensus 256 P~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~-----~p~g-~~siDPsvF~DdDGk~YL~~g~~~ 329 (493)
-+|.|++..|||+|.+... ....|.+.+|++|+|||...... .+.- ...|.|..- .+...|++.+.|.
T Consensus 234 lSv~~~~~~gk~Vl~~~~~----~~~~I~~RtA~~P~GpWs~~~~l~~~~~~~~lYggyihP~s~--~g~~L~~~vS~W~ 307 (316)
T PF13810_consen 234 LSVRYNEYLGKWVLSYFDA----GTGGIVLRTAPSPTGPWSEPKPLVTVEEVPQLYGGYIHPWST--SGDDLYFVVSQWN 307 (316)
T ss_pred eEEEEeCCCCEEEEEEecc----cCCcEEEEecCCCCCCCCCCeeEEeCCcCCcceeeEeCCCcc--CCCCEEEEEEEcc
Confidence 4789988899998887643 23579999999999999853321 1110 124555432 2334777777764
No 85
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=59.11 E-value=2.1e+02 Score=29.17 Aligned_cols=170 Identities=15% Similarity=0.117 Sum_probs=89.3
Q ss_pred CcEEEEEeCC-CCCCEEeceeccCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCC---------CCcceEEE
Q 011114 216 IGVGCYSSKD-MWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCN---------YTKAAVGV 285 (493)
Q Consensus 216 ~gi~v~sS~D-LvnWt~~G~vL~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~---------~~~~~IGV 285 (493)
..+.+..|+| ..+|+....+..... ....++-|.++.+.. |+-+|++...... ....++.+
T Consensus 46 ~~iv~~~S~D~G~tW~~~~~i~~~~~--------~~~~~~~p~~v~~~~-g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (351)
T cd00260 46 IDIVARRSTDGGKTWSPSTVISDGDG--------KSSRVKDPTVVVDGL-GRVFLLVGSFPNGEGEDNDYAGPSNAYLVL 116 (351)
T ss_pred cceeEEEeccCCCcccccEEehhcCC--------CCCcEEcceEEEcCC-CCEEEEEEECCCcccccccccCCCceEEEE
Confidence 3566777776 579999865544322 124578899998544 6766666543221 13467888
Q ss_pred EEeCCCCCCceecccCCCC----CCC----cCCceEEEcCCCcEEEEEEecCCC---ceEEEEcCCCCCCccccEEEeec
Q 011114 286 AISDYPTGPFDYLYSKRPH----GFD----SRDMTIFKDDDGVAYLVYSSEDNS---ELHIGPLTSDYLDVSNVVRRILV 354 (493)
Q Consensus 286 A~SdsP~GPf~~~~~~~p~----g~~----siDPsvF~DdDGk~YL~~g~~~n~---~i~iaeLs~D~~~~~g~~~~i~~ 354 (493)
..|++.--.|.......+. .+. .--..+. -+||+..+........ ...+...+++..+|.-. ..+..
T Consensus 117 ~~S~D~G~tW~~p~~l~~~~~~~~~~~~~~~~g~gi~-l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~-~~~~~ 194 (351)
T cd00260 117 VYSDDDGITWSSPRDLTPSVKGDNWAALFTGPGSGIQ-MKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLG-EGVND 194 (351)
T ss_pred EEEEcCCceecCCccCCccccCcceeEEEecCcCeEE-ecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEEC-CCCCC
Confidence 9998864567643322111 111 1112233 3588877665543221 22333334444555311 01111
Q ss_pred -CceeeeeEEEEE-CCEEEEEEeCCCCCCCCcEEEEEECCCCCCceeC
Q 011114 355 -GQHREAPALFKH-LGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDM 400 (493)
Q Consensus 355 -g~~~EgP~i~K~-~G~YYL~yS~~tg~~~n~~v~~~Sdsp~GPwt~~ 400 (493)
....| |.|+.. +|..+|+..... ......+.|++----|+..
T Consensus 195 ~~~~~e-~~i~el~dG~l~~~~R~~~---~~~~~~~~S~D~G~tWs~~ 238 (351)
T cd00260 195 AGGCSE-CSVVELSDGKLYMYTRDNS---GGRRPVYESRDMGTTWTEA 238 (351)
T ss_pred CCCCcC-CEEEEecCCEEEEEEeeCC---CCcEEEEEEcCCCcCcccC
Confidence 22345 666666 899988776432 1233345566543357765
No 86
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=54.82 E-value=1.2e+02 Score=30.50 Aligned_cols=68 Identities=18% Similarity=0.332 Sum_probs=44.2
Q ss_pred CCcCCceEEEcCCCcEEEEEEecC-CCceEEEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCC
Q 011114 306 FDSRDMTIFKDDDGVAYLVYSSED-NSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCT 378 (493)
Q Consensus 306 ~~siDPsvF~DdDGk~YL~~g~~~-n~~i~iaeLs~D~~~~~g~~~~i~~g~~~EgP~i~K~~G~YYL~yS~~t 378 (493)
..-|| +-+|+.| .|.+|.+.+ ++.|.+++|++..+........-......++.+| .-|.-|.+.|..+
T Consensus 122 ~sdiD--~avDE~G-LWviYat~~~~g~iv~skLdp~tl~~e~tW~T~~~k~~~~~aF~--iCGvLY~v~S~~~ 190 (249)
T KOG3545|consen 122 HSDID--LAVDENG-LWVIYATPENAGTIVLSKLDPETLEVERTWNTTLPKRSAGNAFM--ICGVLYVVHSYNC 190 (249)
T ss_pred Ccccc--ceecccc-eeEEecccccCCcEEeeccCHHHhheeeeeccccCCCCcCceEE--EeeeeEEEecccc
Confidence 34455 4457776 677777754 5678889999976655544433333444555555 4699999999755
No 87
>smart00284 OLF Olfactomedin-like domains.
Probab=43.02 E-value=65 Score=32.59 Aligned_cols=65 Identities=18% Similarity=0.340 Sum_probs=45.4
Q ss_pred CCceEEEcCCCcEEEEEEecC-CCceEEEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeC
Q 011114 309 RDMTIFKDDDGVAYLVYSSED-NSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSG 376 (493)
Q Consensus 309 iDPsvF~DdDGk~YL~~g~~~-n~~i~iaeLs~D~~~~~g~~~~i~~g~~~EgP~i~K~~G~YYL~yS~ 376 (493)
-|..+-+|+.| .|++|.+.. ++.|.++||+++.+++......-...+..+.++| .-|.-|.+.|.
T Consensus 129 sdiDlAvDE~G-LWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFm--vCGvLY~~~s~ 194 (255)
T smart00284 129 SDIDLAVDENG-LWVIYATEQNAGKIVISKLNPATLTIENTWITTYNKRSASNAFM--ICGILYVTRSL 194 (255)
T ss_pred ccEEEEEcCCc-eEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCcccccccEE--EeeEEEEEccC
Confidence 34446668776 688888754 4789999999988877665554444455555555 56999999874
No 88
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=27.40 E-value=2.3e+02 Score=28.46 Aligned_cols=81 Identities=20% Similarity=0.336 Sum_probs=50.9
Q ss_pred CceEEEcCCCcEEEEEEecCC-CceEEEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEE
Q 011114 310 DMTIFKDDDGVAYLVYSSEDN-SELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVH 388 (493)
Q Consensus 310 DPsvF~DdDGk~YL~~g~~~n-~~i~iaeLs~D~~~~~g~~~~i~~g~~~EgP~i~K~~G~YYL~yS~~tg~~~n~~v~~ 388 (493)
|-.+-+|+.| .|++|.+..+ +.|.+++|+++-+++......-...+..+..+| .-|..|.+.|..+. +..+.+
T Consensus 125 ~iD~AvDE~G-LWvIYat~~~~g~ivvskld~~tL~v~~tw~T~~~k~~~~naFm--vCGvLY~~~s~~~~---~~~I~y 198 (250)
T PF02191_consen 125 DIDFAVDENG-LWVIYATEDNNGNIVVSKLDPETLSVEQTWNTSYPKRSAGNAFM--VCGVLYATDSYDTR---DTEIFY 198 (250)
T ss_pred eEEEEEcCCC-EEEEEecCCCCCcEEEEeeCcccCceEEEEEeccCchhhcceee--EeeEEEEEEECCCC---CcEEEE
Confidence 3335557765 7888887654 469999999988877655544344444555444 57999999986432 234545
Q ss_pred EECCCCCC
Q 011114 389 AAESIMGP 396 (493)
Q Consensus 389 ~Sdsp~GP 396 (493)
+=|--+|.
T Consensus 199 afDt~t~~ 206 (250)
T PF02191_consen 199 AFDTYTGK 206 (250)
T ss_pred EEECCCCc
Confidence 43333443
No 89
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=25.42 E-value=7.3e+02 Score=25.22 Aligned_cols=175 Identities=11% Similarity=0.102 Sum_probs=91.2
Q ss_pred cEEEEEeCCC-CCCEEeceeccCCCc-ccccccCCCCeeeec--eEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCC
Q 011114 217 GVGCYSSKDM-WTWKNEGIVLAAEET-NETHDLYKLNVLERP--KVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPT 292 (493)
Q Consensus 217 gi~v~sS~DL-vnWt~~G~vL~~~~~-~~~~~~~~~~~iWAP--~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~ 292 (493)
.+.+..|+|. .+|+....+.+.... .+. ..+=.| -+.. .+|+.++-+...... ......+..|++--
T Consensus 113 ~~~~~~S~D~G~tW~~p~~l~~~~~~~~~~------~~~~~~g~gi~l--~~Grlv~p~~~~~~~-~~~~~~~~~S~D~G 183 (351)
T cd00260 113 YLVLVYSDDDGITWSSPRDLTPSVKGDNWA------ALFTGPGSGIQM--KDGRLVFPVYGGNAG-GRVSSAIIYSDDSG 183 (351)
T ss_pred EEEEEEEEcCCceecCCccCCccccCccee------EEEecCcCeEEe--cCCcEEEEEEEEcCC-CCEEEEEEEECCCC
Confidence 4556666664 789876554432210 110 011111 2332 579987776654322 23556777888754
Q ss_pred CCceecccCCCCCCCcCCceEEEcCCCcEEEEEEecCCCceEEEEcCCCCCCccccEEEee---------cCceeeeeEE
Q 011114 293 GPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRIL---------VGQHREAPAL 363 (493)
Q Consensus 293 GPf~~~~~~~p~g~~siDPsvF~DdDGk~YL~~g~~~n~~i~iaeLs~D~~~~~g~~~~i~---------~g~~~EgP~i 363 (493)
-.|+..... +.......|+++.-.||+.+|+......+.+.+++-++...+|........ .....++..+
T Consensus 184 ~tW~~~~~~-~~~~~~~e~~i~el~dG~l~~~~R~~~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~g~~~~~i 262 (351)
T cd00260 184 KTWKLGEGV-NDAGGCSECSVVELSDGKLYMYTRDNSGGRRPVYESRDMGTTWTEALGTLSRVWGNCPTRCGSGVQGSFI 262 (351)
T ss_pred CCcEECCCC-CCCCCCcCCEEEEecCCEEEEEEeeCCCCcEEEEEEcCCCcCcccCcCCccccccccccCCCCcccceEE
Confidence 458754221 111456788999888999998877652345666665555666754322111 1223333333
Q ss_pred EE-EC-CEEEEEEeCCCCCCCCc-EEEEEECCCCCCceeCC
Q 011114 364 FK-HL-GTYYMVTSGCTGWAPNE-ALVHAAESIMGPWEDMG 401 (493)
Q Consensus 364 ~K-~~-G~YYL~yS~~tg~~~n~-~v~~~Sdsp~GPwt~~g 401 (493)
-. .+ |+-+|+++......... ...+.+++-..-|....
T Consensus 263 ~~~~~~g~~~ll~~~~~~~~~R~~l~l~~s~d~g~~w~~~~ 303 (351)
T cd00260 263 TATIESGKKVMLLSRPNSPDSRSNLTLWLTDNNGSRWLDVG 303 (351)
T ss_pred EeEecCCCEEEEEeCCCCCCCCCceEEEEEeCCCceEEeee
Confidence 32 23 77778887532211112 22334554434566654
No 90
>PRK10927 essential cell division protein FtsN; Provisional
Probab=22.30 E-value=1.5e+02 Score=30.87 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=10.0
Q ss_pred heeeeeeccCCCC
Q 011114 65 HFFSLVSHKDGTS 77 (493)
Q Consensus 65 ~~~~~~~~~~~~~ 77 (493)
.||++.|||..+.
T Consensus 50 GLyFith~k~~e~ 62 (319)
T PRK10927 50 GLYFITHHKKEES 62 (319)
T ss_pred heEEEecCCCCCC
Confidence 4999999987544
Done!