BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011115
(493 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|B Chain B, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|C Chain C, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
pdb|1CT9|D Chain D, Crystal Structure Of Asparagine Synthetase B From
Escherichia Coli
Length = 553
Score = 506 bits (1302), Expect = e-143, Method: Compositional matrix adjust.
Identities = 254/478 (53%), Positives = 330/478 (69%), Gaps = 12/478 (2%)
Query: 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQ 61
I V D+ R + LELSR ++HRGPDWSG+Y + LAH+RL+I+D +G Q
Sbjct: 1 ASIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQ 60
Query: 62 PLYNEDKKIVVTVNGEIYNHEALR-ERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGM 120
PLYN+ K V+ VNGEIYNH+ALR E ++F+TGSDC+VI LY+E G F+D L GM
Sbjct: 61 PLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQGM 120
Query: 121 FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLY 180
F+F L D+ +++++ RD +GI LY+G+ G ++++SE+K L C + FP G
Sbjct: 121 FAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPAGSYL 180
Query: 181 SSKSGGLKRWYNPTWYS-EAIPSTPYDPLVLRQAFENAVIKRLMTDVPFXXXXXXXXXXX 239
S+ G ++ +Y+ W+ +A+ D LRQA E++V LM+DVP+
Sbjct: 181 WSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSS 240
Query: 240 XXXXIT----ARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFT 295
IT AR + + + W QLHSF VGL GSPDLK A+EVA++LGTVHHE HFT
Sbjct: 241 IISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFT 300
Query: 296 VQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355
VQ+G+DAI +VIYH+ETYDVTTIRASTPM+LMSRKIK++G+KMV+SGEGSDE+FGGYLYF
Sbjct: 301 VQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYF 360
Query: 356 HKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWK 415
HKAPN +E H ET K+ ALH YDC RANK+ SAWG+EARVPFLDK F++VAM I+P+ K
Sbjct: 361 HKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQDK 420
Query: 416 MINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHV 473
M G++EK ILR+ F+ YLP V +RQKEQFSDGVGYSWID LK A Q V
Sbjct: 421 MCG--NGKMEKHILRECFE----AYLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQV 472
>pdb|1Q15|A Chain A, Carbapenam Synthetase
pdb|1Q15|B Chain B, Carbapenam Synthetase
pdb|1Q15|C Chain C, Carbapenam Synthetase
pdb|1Q15|D Chain D, Carbapenam Synthetase
pdb|1Q19|A Chain A, Carbapenam Synthetase
pdb|1Q19|B Chain B, Carbapenam Synthetase
pdb|1Q19|C Chain C, Carbapenam Synthetase
pdb|1Q19|D Chain D, Carbapenam Synthetase
Length = 503
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 106/206 (51%), Gaps = 12/206 (5%)
Query: 252 TKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVE 311
T A + +L+++ +G E S + +++++VAD LGT H + + I+ I E IY+ E
Sbjct: 255 TALASRHFKKLNTYSIGTELSNEFEFSQQVADALGTHHQMKILSETEVINGIIESIYYNE 314
Query: 312 TYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY-FHKAPNKEEFHRETCH 370
+D + + +F + R+ + V +++G GSD +FGG L + N + E +
Sbjct: 315 IFDGLSAEIQSGLFNVYRQAQG-QVSCMLTGYGSDLLFGGILKPGAQYDNPNQLLAEQVY 373
Query: 371 KIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILR 430
+ + ++ A S +G++ R PF I++ A+ P++K+ + + K ILR
Sbjct: 374 RTRWTGEF----ATHGASCYGIDIRHPFWSHSLISLCHALHPDYKIFDNE----VKNILR 425
Query: 431 KAFDDEERPYLPKHVLYRQKEQFSDG 456
+ D + LPK +++R+K +G
Sbjct: 426 EYADSLQ--LLPKDIVWRKKIGIHEG 449
>pdb|1JGT|A Chain A, Crystal Structure Of Beta-Lactam Synthetase
pdb|1JGT|B Chain B, Crystal Structure Of Beta-Lactam Synthetase
pdb|1M1Z|A Chain A, Beta-Lactam Synthetase Apo Enzyme
pdb|1M1Z|B Chain B, Beta-Lactam Synthetase Apo Enzyme
pdb|1MB9|A Chain A, Beta-Lactam Synthetase Complexed With Atp
pdb|1MB9|B Chain B, Beta-Lactam Synthetase Complexed With Atp
pdb|1MBZ|A Chain A, Beta-Lactam Synthetase With Trapped Intermediate
pdb|1MBZ|B Chain B, Beta-Lactam Synthetase With Trapped Intermediate
pdb|1MC1|A Chain A, Beta-Lactam Synthetase With Product (Dgpc), Amp And Ppi
pdb|1MC1|B Chain B, Beta-Lactam Synthetase With Product (Dgpc), Amp And Ppi
Length = 513
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 88/411 (21%), Positives = 156/411 (37%), Gaps = 56/411 (13%)
Query: 74 VNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSF 133
+ GEIYN + L L G D +++ L E Y + +++G F+ V+ +
Sbjct: 75 LAGEIYNRDELLSVLPAGPAPEG-DAELVLRLLERYDLHAFRLVNGRFATVV--RTGDRV 131
Query: 134 IVARDAIGITSLYIGWGLDGSIWISSELKGL--NDDCEHFE--------------AFPPG 177
++A D G LY G + S+E K L + D + F P G
Sbjct: 132 LLATDHAGSVPLYTCVA-PGEVRASTEAKALAAHRDPKGFPLADARRVAGLTGVYQVPAG 190
Query: 178 HLY----SSKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMT-DVPFXXXX 232
+ S + R + P +P V R A E AV +R+ D P
Sbjct: 191 AVMDIDLGSGTAVTHRTWTPGLSRRILPEGEAVAAV-RAALEKAVAQRVTPGDTPLVVLS 249
Query: 233 XXXXXXXXXXXITARHLAGTKA-ARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHE 291
+G A A + +L + +G + S + + A+ V D+L T H E
Sbjct: 250 GGIDS------------SGVAACAHRAAGELDTVSMGTDTSNEFREARAVVDHLRTRHRE 297
Query: 292 FHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGG 351
+ + + ++ E+ D I P+ + R + + +++G G+D GG
Sbjct: 298 ITIPTTELLAQLPYAVWASESVDPDIIEYLLPLTALYRALDG-PERRILTGYGADIPLGG 356
Query: 352 YLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSA--WGLEARVPFLDKDFINVAMA 409
H+ H + + + ST A W P+ D++ +++ ++
Sbjct: 357 ---MHREDRLPALDTVLAHDMATFDGLNEMSPVLSTLAGHWTTH---PYWDREVLDLLVS 410
Query: 410 IDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYS 460
++ K + GR +KW+LR A D LP + R K +G G +
Sbjct: 411 LEAGLKR---RHGR-DKWVLRAAMADA----LPAETVNRPKLGVHEGSGTT 453
>pdb|1XFF|A Chain A, Glutaminase Domain Of Glucosamine 6-Phosphate Synthase
Complexed With Glutamate
pdb|1XFF|B Chain B, Glutaminase Domain Of Glucosamine 6-Phosphate Synthase
Complexed With Glutamate
pdb|1XFG|A Chain A, Glutaminase Domain Of Glucosamine 6-phosphate Synthase
Complexed With L-glu Hydroxamate
pdb|1XFG|B Chain B, Glutaminase Domain Of Glucosamine 6-phosphate Synthase
Complexed With L-glu Hydroxamate
Length = 240
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 82/201 (40%), Gaps = 48/201 (23%)
Query: 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQ--------------------- 40
CGI+ + D ++ +LE RRL++RG D +GL
Sbjct: 1 CGIVGAIAQRDVAEI----LLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQ 56
Query: 41 -------HGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNHEALRERLT--NH 91
HG +AH R A S + + IVV NG I NHE LRE L +
Sbjct: 57 AAEEHPLHGGTGIAHTRWATHGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGY 116
Query: 92 KFRTGSDCDVIAHL----------YEEYGENFVDMLDGMFSFVLLDTRD-NSFIVARDAI 140
F + +D +VIAHL E + L G + V++D+R ++ + AR
Sbjct: 117 TFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSG- 175
Query: 141 GITSLYIGWGLDGSIWISSEL 161
+ L IG G+ + S +L
Sbjct: 176 --SPLVIGLGMGENFIASDQL 194
>pdb|1JXA|A Chain A, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
pdb|1JXA|B Chain B, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
pdb|1JXA|C Chain C, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate
pdb|2BPL|A Chain A, E.Coli Glucosamine-6p Synthase In Complex With Fructose-6p
pdb|2BPL|B Chain B, E.Coli Glucosamine-6p Synthase In Complex With Fructose-6p
pdb|2BPL|C Chain C, E.Coli Glucosamine-6p Synthase In Complex With Fructose-6p
Length = 608
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 82/201 (40%), Gaps = 48/201 (23%)
Query: 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLY---------------------- 39
CGI+ + D ++ +LE RRL++RG D +GL
Sbjct: 1 CGIVGAIAQRDVAEI----LLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQ 56
Query: 40 ------QHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNHEALRERLT--NH 91
HG +AH R A S + + IVV NG I NHE LRE L +
Sbjct: 57 AAEEHPLHGGTGIAHTRWATHGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGY 116
Query: 92 KFRTGSDCDVIAHL----------YEEYGENFVDMLDGMFSFVLLDTR-DNSFIVARDAI 140
F + +D +VIAHL E + L G + V++D+R ++ + AR
Sbjct: 117 TFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSG- 175
Query: 141 GITSLYIGWGLDGSIWISSEL 161
+ L IG G+ + S +L
Sbjct: 176 --SPLVIGLGMGENFIASDQL 194
>pdb|2J6H|A Chain A, E. Coli Glucosamine-6-p Synthase In Complex With
Glucose-6p And 5-oxo-l-norleucine
pdb|2J6H|B Chain B, E. Coli Glucosamine-6-p Synthase In Complex With
Glucose-6p And 5-oxo-l-norleucine
pdb|2VF4|X Chain X, E. Coli Glucosamine-6-P Synthase
pdb|2VF5|X Chain X, Glucosamine-6-Phosphate Synthase In Complex With
Glucosamine-6-Phosphate
Length = 608
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 82/201 (40%), Gaps = 48/201 (23%)
Query: 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLY---------------------- 39
CGI+ + D ++ +LE RRL++RG D +GL
Sbjct: 1 CGIVGAIAQRDVAEI----LLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQ 56
Query: 40 ------QHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNHEALRERLT--NH 91
HG +AH R A S + + IVV NG I NHE LRE L +
Sbjct: 57 AAEEHPLHGGTGIAHTRWATHGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGY 116
Query: 92 KFRTGSDCDVIAHL----------YEEYGENFVDMLDGMFSFVLLDTR-DNSFIVARDAI 140
F + +D +VIAHL E + L G + V++D+R ++ + AR
Sbjct: 117 TFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSG- 175
Query: 141 GITSLYIGWGLDGSIWISSEL 161
+ L IG G+ + S +L
Sbjct: 176 --SPLVIGLGMGENFIASDQL 194
>pdb|1GPH|1 Chain 1, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|2 Chain 2, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|3 Chain 3, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|4 Chain 4, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
Length = 465
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 15/158 (9%)
Query: 61 QPLY---NEDKKIVVTVNGEIYNHEALRERLTNHK--FRTGSDCDVIAHLYEEYG----- 110
QPL + + + NG + N L+++L N F+T SD +V+AHL + G
Sbjct: 85 QPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLK 144
Query: 111 ---ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD 167
+N + ML G ++F+++ + IVA D G+ L IG D + S
Sbjct: 145 DQIKNSLSMLKGAYAFLIMT--ETEMIVALDPNGLRPLSIGMMGDAYVVASETCAFDVVG 202
Query: 168 CEHFEAFPPGHLYSSKSGGLKRWYNPTWYSEAIPSTPY 205
+ PG + G+K + +I S Y
Sbjct: 203 ATYLREVEPGEMLIINDEGMKSERFSMNINRSICSMEY 240
>pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|B Chain B, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|C Chain C, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|D Chain D, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
Length = 459
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 15/158 (9%)
Query: 61 QPLY---NEDKKIVVTVNGEIYNHEALRERLTNHK--FRTGSDCDVIAHLYEEYG----- 110
QPL + + + NG + N L+++L N F+T SD +V+AHL + G
Sbjct: 85 QPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLK 144
Query: 111 ---ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD 167
+N + ML G ++F+++ + IVA D G+ L IG D + S
Sbjct: 145 DQIKNSLSMLKGAYAFLIMT--ETEMIVALDPNGLRPLSIGMMGDAYVVASETCAFDVVG 202
Query: 168 CEHFEAFPPGHLYSSKSGGLKRWYNPTWYSEAIPSTPY 205
+ PG + G+K + +I S Y
Sbjct: 203 ATYLREVEPGEMLIINDEGMKSERFSMNINRSICSMEY 240
>pdb|3OOJ|A Chain A, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|B Chain B, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|C Chain C, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|D Chain D, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|E Chain E, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|F Chain F, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|G Chain G, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
pdb|3OOJ|H Chain H, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And
Glutamate
Length = 608
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 81/201 (40%), Gaps = 48/201 (23%)
Query: 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLY---------------------- 39
GI+ + D ++ +LE RRL++RG D +GL
Sbjct: 1 AGIVGAIAQRDVAEI----LLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQ 56
Query: 40 ------QHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNHEALRERLT--NH 91
HG +AH R A S + + IVV NG I NHE LRE L +
Sbjct: 57 AAEEHPLHGGTGIAHTRWATHGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGY 116
Query: 92 KFRTGSDCDVIAHL----------YEEYGENFVDMLDGMFSFVLLDTR-DNSFIVARDAI 140
F + +D +VIAHL E + L G + V++D+R ++ + AR
Sbjct: 117 TFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSG- 175
Query: 141 GITSLYIGWGLDGSIWISSEL 161
+ L IG G+ + S +L
Sbjct: 176 --SPLVIGLGMGENFIASDQL 194
>pdb|1DPP|A Chain A, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|C Chain C, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|E Chain E, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|G Chain G, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
Length = 507
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 132 SFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWY 191
++ V +DAI I ++Y G G+ I + G NDD + + P K GL++ +
Sbjct: 286 TYAVNKDAI-IKAVYQGAGVSAKNLIPPTMWGYNDDVQDYTYDPEKAKALLKEAGLEKGF 344
Query: 192 NPTWYSEAIPSTPYDPLVLRQA 213
+ ++ + PY+P R A
Sbjct: 345 SIDLWAMPV-QRPYNPNARRMA 365
>pdb|1DPE|A Chain A, Dipeptide-Binding Protein
Length = 507
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 132 SFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWY 191
++ V +DAI I ++Y G G+ I + G NDD + + P K GL++ +
Sbjct: 286 TYAVNKDAI-IKAVYQGAGVSAKNLIPPTMWGYNDDVQDYTYDPEKAKALLKEAGLEKGF 344
Query: 192 NPTWYSEAIPSTPYDPLVLRQA 213
+ ++ + PY+P R A
Sbjct: 345 SIDLWAMPV-QRPYNPNARRMA 365
>pdb|2Y0F|A Chain A, Structure Of Gcpe (Ispg) From Thermus Thermophilus Hb27
pdb|2Y0F|B Chain B, Structure Of Gcpe (Ispg) From Thermus Thermophilus Hb27
pdb|2Y0F|C Chain C, Structure Of Gcpe (Ispg) From Thermus Thermophilus Hb27
pdb|2Y0F|D Chain D, Structure Of Gcpe (Ispg) From Thermus Thermophilus Hb27
pdb|4G9P|A Chain A, Structure Of The Gcpe-Mecpp (Ispg) Complex From Thermus
Thermophilus
Length = 406
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
Query: 23 ELSRRLKHRGPDWSGLYQ--------------HGDFYLAHQRLAIIDPASGDQPLYN--E 66
E+SRRLK R P+W Y +G H + I P +G++P
Sbjct: 314 EVSRRLKERLPEWRARYPGVEELKVAVMGCVVNGPGESKHAHIGISLPGAGEEPKAPVYA 373
Query: 67 DKKIVVTVNGEIYNHEALR 85
D K++ + GE E LR
Sbjct: 374 DGKLLTILKGEGIAEEFLR 392
>pdb|3TSP|A Chain A, Crystal Structure Of E. Coli Hypf
pdb|3TSU|A Chain A, Crystal Structure Of E. Coli Hypf With Amp-Pnp And
Carbamoyl Phosphate
pdb|3TTC|A Chain A, Crystal Structure Of E. Coli Hypf With Adp And Carbamoyl
Phosphate
pdb|3TTF|A Chain A, Crystal Structure Of E. Coli Hypf With Amp And Carbamoyl
Phosphate
Length = 657
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 11/100 (11%)
Query: 138 DAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYN----- 192
D I +T IG G +G++W L+ +CEH P L + W N
Sbjct: 406 DVIALTLDGIGMGENGALWGGECLRVNYRECEHLGGLPAVALPGGDLAAKQPWRNLLAQC 465
Query: 193 ----PTW--YSEAIPSTPYDPLVLRQAFENAVIKRLMTDV 226
P W Y E + VL +A E + L +
Sbjct: 466 LRFVPEWQNYPETASVAAANWSVLARAIERGINAPLASSC 505
>pdb|3TSQ|A Chain A, Crystal Structure Of E. Coli Hypf With Atp And Carbamoyl
Phosphate
pdb|3TTD|A Chain A, Crystal Structure Of E. Coli Hypf With Amp-Cpp And
Carbamoyl Phosphate
Length = 658
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 11/100 (11%)
Query: 138 DAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYN----- 192
D I +T IG G +G++W L+ +CEH P L + W N
Sbjct: 406 DVIALTLDGIGMGENGALWGGECLRVNYRECEHLGGLPAVALPGGDLAAKQPWRNLLAQC 465
Query: 193 ----PTW--YSEAIPSTPYDPLVLRQAFENAVIKRLMTDV 226
P W Y E + VL +A E + L +
Sbjct: 466 LRFVPEWQNYPETASVAAANWSVLARAIERGINAPLASSC 505
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 22/103 (21%)
Query: 383 ANKSTSAWGLEA----RVPFLDKDFINVAMAIDPEWK-MINPQ-----EGRIE------K 426
AN + WG + + P++D + A + E K M+NP E I
Sbjct: 28 ANPHPNVWGYDLVHSLKSPYIDSSYRERAEVLVSEIKAMLNPAITGDGESMITPSAYDTA 87
Query: 427 WILR-KAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAH 468
W+ R A D RP P+ V + K Q DG SW G+++H
Sbjct: 88 WVARVPAIDGSARPQFPQTVDWILKNQLKDG---SW--GIQSH 125
>pdb|1TT8|A Chain A, Chorismate Lyase With Product, 1.0 A Resolution
Length = 164
Score = 28.9 bits (63), Expect = 6.1, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 14/96 (14%)
Query: 374 ALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAF 433
AL Q LR +K +P LD ++ + D K Q + ++R+ F
Sbjct: 4 ALTQLRALRYSK---------EIPALDPQLLDWLLLEDSMTKRFEQQGKTVSVTMIREGF 54
Query: 434 DD-----EERPYLPKHVLYRQKEQFSDGVGYSWIDG 464
+ EE P LPK Y +E G W+ G
Sbjct: 55 VEQNEIPEELPLLPKESRYWLREILLSADGEPWLAG 90
>pdb|1FW9|A Chain A, Chorismate Lyase With Bound Product
pdb|2AHC|A Chain A, Chorismate Lyase With Inhibitor Vanilate
pdb|2AHC|B Chain B, Chorismate Lyase With Inhibitor Vanilate
pdb|2AHC|C Chain C, Chorismate Lyase With Inhibitor Vanilate
pdb|2AHC|D Chain D, Chorismate Lyase With Inhibitor Vanilate
Length = 164
Score = 28.9 bits (63), Expect = 6.4, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 14/96 (14%)
Query: 374 ALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAF 433
AL Q LR +K +P LD ++ + D K Q + ++R+ F
Sbjct: 4 ALTQLRALRYSK---------EIPALDPQLLDWLLLEDSMTKRFEQQGKTVSVTMIREGF 54
Query: 434 DD-----EERPYLPKHVLYRQKEQFSDGVGYSWIDG 464
+ EE P LPK Y +E G W+ G
Sbjct: 55 VEQNEIPEELPLLPKESRYWLREILLSADGEPWLAG 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,754,773
Number of Sequences: 62578
Number of extensions: 681271
Number of successful extensions: 1455
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1439
Number of HSP's gapped (non-prelim): 24
length of query: 493
length of database: 14,973,337
effective HSP length: 103
effective length of query: 390
effective length of database: 8,527,803
effective search space: 3325843170
effective search space used: 3325843170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)