Query 011115
Match_columns 493
No_of_seqs 329 out of 2047
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 08:17:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09431 asnB asparagine synth 100.0 2E-102 4E-107 818.2 49.5 474 1-480 1-480 (554)
2 KOG0571 Asparagine synthase (g 100.0 5E-104 1E-108 754.9 33.7 478 1-481 1-479 (543)
3 PLN02549 asparagine synthase ( 100.0 3E-102 7E-107 816.8 50.0 480 1-480 1-480 (578)
4 PTZ00077 asparagine synthetase 100.0 5E-102 1E-106 817.9 49.7 481 1-481 1-495 (586)
5 TIGR03104 trio_amidotrans aspa 100.0 3.1E-93 6.7E-98 758.3 46.3 465 1-489 1-557 (589)
6 TIGR03108 eps_aminotran_1 exos 100.0 3.4E-88 7.5E-93 729.7 45.8 467 1-489 1-597 (628)
7 TIGR01536 asn_synth_AEB aspara 100.0 1.3E-85 2.7E-90 687.2 46.2 429 4-453 1-467 (467)
8 COG0367 AsnB Asparagine syntha 100.0 1.3E-84 2.8E-89 680.8 41.7 471 1-489 1-513 (542)
9 KOG0573 Asparagine synthase [A 100.0 8.2E-46 1.8E-50 357.7 26.0 430 1-458 1-499 (520)
10 cd01991 Asn_Synthase_B_C The C 100.0 2.2E-41 4.8E-46 329.8 18.8 227 211-456 1-269 (269)
11 cd00712 AsnB Glutamine amidotr 100.0 6.4E-40 1.4E-44 309.0 24.9 189 2-192 1-220 (220)
12 PF00733 Asn_synthase: Asparag 100.0 1.3E-39 2.8E-44 314.4 16.8 225 209-450 1-255 (255)
13 PRK08525 amidophosphoribosyltr 100.0 1.8E-35 3.8E-40 303.3 27.8 218 1-224 1-274 (445)
14 cd03766 Gn_AT_II_novel Gn_AT_I 100.0 2.3E-36 4.9E-41 274.1 17.9 168 1-178 1-179 (181)
15 PRK07631 amidophosphoribosyltr 100.0 1.9E-34 4.1E-39 295.1 29.0 233 1-243 11-298 (475)
16 PRK06388 amidophosphoribosyltr 100.0 9.8E-35 2.1E-39 297.6 25.9 227 1-234 19-302 (474)
17 PRK07272 amidophosphoribosyltr 100.0 4.1E-34 9E-39 293.2 30.1 183 1-189 11-236 (484)
18 PRK09123 amidophosphoribosyltr 100.0 3.7E-34 7.9E-39 294.6 28.9 233 1-243 21-310 (479)
19 cd00714 GFAT Glutamine amidotr 100.0 1E-34 2.2E-39 271.8 21.8 172 2-181 1-214 (215)
20 PRK07349 amidophosphoribosyltr 100.0 7.3E-34 1.6E-38 292.1 28.1 228 1-233 33-322 (500)
21 PRK08341 amidophosphoribosyltr 100.0 6.4E-34 1.4E-38 289.6 25.5 226 1-235 4-283 (442)
22 PRK06781 amidophosphoribosyltr 100.0 2.9E-33 6.4E-38 286.9 29.6 234 1-244 11-299 (471)
23 PRK07847 amidophosphoribosyltr 100.0 2.4E-33 5.2E-38 288.9 26.2 228 1-234 23-313 (510)
24 PLN02440 amidophosphoribosyltr 100.0 3.3E-33 7.1E-38 288.7 23.9 180 1-186 1-222 (479)
25 PRK05793 amidophosphoribosyltr 100.0 6.4E-32 1.4E-36 278.4 28.8 183 1-188 14-238 (469)
26 cd00715 GPATase_N Glutamine am 100.0 4E-32 8.7E-37 260.7 23.5 183 2-190 1-226 (252)
27 PRK00331 glucosamine--fructose 100.0 3E-32 6.6E-37 293.6 23.2 180 1-188 1-222 (604)
28 cd01907 GlxB Glutamine amidotr 100.0 1.9E-32 4.2E-37 261.3 18.6 174 2-181 1-248 (249)
29 PRK09246 amidophosphoribosyltr 100.0 3.7E-32 7.9E-37 282.8 22.1 181 1-186 1-235 (501)
30 TIGR01134 purF amidophosphorib 100.0 1.5E-30 3.4E-35 266.9 28.3 226 2-233 1-283 (442)
31 TIGR01135 glmS glucosamine--fr 100.0 2.7E-31 5.9E-36 286.3 21.9 179 2-188 1-221 (607)
32 cd01909 betaLS_CarA_N Glutamin 100.0 3.7E-31 8.1E-36 240.8 19.2 129 60-193 44-199 (199)
33 PTZ00295 glucosamine-fructose- 100.0 1.5E-30 3.2E-35 281.0 21.5 183 1-191 24-255 (640)
34 cd00352 Gn_AT_II Glutamine ami 100.0 4.8E-30 1E-34 242.3 21.8 179 2-180 1-220 (220)
35 COG0034 PurF Glutamine phospho 100.0 6.3E-28 1.4E-32 236.7 26.0 239 1-246 4-301 (470)
36 cd01910 Wali7 This domain is p 100.0 4.4E-28 9.4E-33 221.1 20.8 138 61-201 64-209 (224)
37 PTZ00394 glucosamine-fructose- 100.0 3.5E-28 7.6E-33 261.6 21.9 183 1-186 1-275 (670)
38 PF13537 GATase_7: Glutamine a 100.0 3.2E-29 6.9E-34 214.4 10.7 119 48-166 1-125 (125)
39 PLN02981 glucosamine:fructose- 100.0 3E-28 6.5E-33 263.2 20.5 184 1-187 1-273 (680)
40 KOG0572 Glutamine phosphoribos 99.9 8.8E-27 1.9E-31 221.2 18.1 187 1-191 1-241 (474)
41 COG0449 GlmS Glucosamine 6-pho 99.9 3.7E-26 7.9E-31 234.8 19.7 179 1-188 1-219 (597)
42 PF13522 GATase_6: Glutamine a 99.9 3E-26 6.5E-31 197.8 15.3 127 33-160 1-133 (133)
43 TIGR03442 conserved hypothetic 99.8 7.2E-19 1.6E-23 167.6 16.6 174 1-188 1-247 (251)
44 KOG1268 Glucosamine 6-phosphat 99.8 1E-18 2.2E-23 172.6 14.5 183 1-186 1-278 (670)
45 PF00310 GATase_2: Glutamine a 99.7 1.2E-16 2.7E-21 159.0 18.4 111 43-161 196-361 (361)
46 cd01908 YafJ Glutamine amidotr 99.7 1.2E-16 2.6E-21 154.0 15.5 134 43-184 81-256 (257)
47 cd00713 GltS Glutamine amidotr 99.7 6.1E-16 1.3E-20 154.8 16.6 135 43-185 202-395 (413)
48 PF12481 DUF3700: Aluminium in 99.5 2.6E-12 5.6E-17 115.2 16.9 132 67-201 74-213 (228)
49 cd01996 Alpha_ANH_like_III Thi 99.5 4E-13 8.7E-18 119.4 11.6 126 227-364 3-131 (154)
50 TIGR03573 WbuX N-acetyl sugar 99.4 5.2E-12 1.1E-16 126.6 14.8 118 226-354 60-179 (343)
51 COG0067 GltB Glutamate synthas 99.2 1.3E-10 2.8E-15 114.2 14.2 133 43-186 203-362 (371)
52 PRK11750 gltB glutamate syntha 99.1 4.8E-10 1E-14 126.3 13.9 133 43-183 213-403 (1485)
53 TIGR00268 conserved hypothetic 99.1 7.9E-10 1.7E-14 106.2 12.6 119 218-353 5-125 (252)
54 COG1606 ATP-utilizing enzymes 99.1 7.2E-10 1.6E-14 102.1 11.3 117 221-353 13-131 (269)
55 PRK14561 hypothetical protein; 99.0 1.9E-09 4.2E-14 99.1 10.9 106 227-348 2-107 (194)
56 cd00553 NAD_synthase NAD+ synt 99.0 3.4E-09 7.3E-14 101.7 12.3 132 209-353 9-147 (248)
57 PF13230 GATase_4: Glutamine a 99.0 2.8E-09 6.1E-14 103.0 11.4 178 1-187 1-253 (271)
58 cd01990 Alpha_ANH_like_I This 98.9 4.1E-09 8.8E-14 98.0 9.7 110 228-352 1-112 (202)
59 TIGR00552 nadE NAD+ synthetase 98.9 3E-09 6.6E-14 102.1 9.0 134 206-353 5-145 (250)
60 PRK13980 NAD synthetase; Provi 98.9 7.4E-09 1.6E-13 100.2 10.5 133 208-353 15-149 (265)
61 PRK00143 mnmA tRNA-specific 2- 98.8 1.7E-08 3.7E-13 101.3 11.0 113 227-349 2-130 (346)
62 cd01998 tRNA_Me_trans tRNA met 98.8 2.4E-08 5.3E-13 100.3 11.4 113 227-349 1-127 (349)
63 COG0482 TrmU Predicted tRNA(5- 98.8 2.1E-08 4.5E-13 98.3 10.4 113 225-347 3-128 (356)
64 PF03054 tRNA_Me_trans: tRNA m 98.8 7.9E-09 1.7E-13 102.8 7.0 114 227-350 2-131 (356)
65 PF06508 QueC: Queuosine biosy 98.8 3.4E-08 7.3E-13 91.8 10.7 156 228-411 2-174 (209)
66 PRK00876 nadE NAD synthetase; 98.8 1.7E-08 3.6E-13 99.5 9.1 83 205-296 14-98 (326)
67 PRK11106 queuosine biosynthesi 98.8 2.9E-08 6.3E-13 93.2 10.4 156 227-410 3-175 (231)
68 cd01993 Alpha_ANH_like_II This 98.8 3E-08 6.5E-13 90.7 9.9 117 227-350 1-121 (185)
69 PRK14665 mnmA tRNA-specific 2- 98.8 2.2E-08 4.8E-13 100.3 9.8 115 222-346 2-124 (360)
70 COG0603 Predicted PP-loop supe 98.8 1.8E-08 4E-13 92.3 7.4 117 227-354 4-133 (222)
71 PRK04527 argininosuccinate syn 98.7 6.6E-08 1.4E-12 97.2 10.6 108 226-344 3-118 (400)
72 PRK14664 tRNA-specific 2-thiou 98.7 1.3E-07 2.9E-12 94.6 12.0 113 224-347 4-120 (362)
73 TIGR00420 trmU tRNA (5-methyla 98.6 1.5E-07 3.2E-12 94.5 10.6 109 227-345 2-127 (352)
74 TIGR00884 guaA_Cterm GMP synth 98.6 1.8E-07 4E-12 92.1 11.0 118 216-348 8-130 (311)
75 PTZ00323 NAD+ synthase; Provis 98.6 4.1E-07 9E-12 88.5 13.0 140 209-354 28-181 (294)
76 PRK00509 argininosuccinate syn 98.6 2E-07 4.3E-12 94.1 10.6 110 226-345 3-119 (399)
77 cd01712 ThiI ThiI is required 98.6 3E-07 6.5E-12 83.6 10.8 109 227-347 1-115 (177)
78 PRK00919 GMP synthase subunit 98.6 4.2E-07 9E-12 89.0 11.5 124 209-348 6-132 (307)
79 PF02540 NAD_synthase: NAD syn 98.6 3.3E-07 7.1E-12 87.2 10.4 134 208-354 3-139 (242)
80 PRK10696 tRNA 2-thiocytidine b 98.5 7.4E-07 1.6E-11 86.0 12.2 133 208-349 10-145 (258)
81 TIGR00364 exsB protein. This p 98.5 2.8E-07 6E-12 85.6 8.4 115 229-354 2-129 (201)
82 PF09147 DUF1933: Domain of un 98.5 3E-06 6.5E-11 73.5 12.3 120 59-183 40-187 (201)
83 PRK13820 argininosuccinate syn 98.5 1.1E-06 2.3E-11 88.8 11.2 111 226-346 3-120 (394)
84 TIGR02432 lysidine_TilS_N tRNA 98.5 6.5E-07 1.4E-11 82.3 8.9 108 227-348 1-112 (189)
85 PRK08349 hypothetical protein; 98.5 8.3E-07 1.8E-11 82.2 9.5 110 227-348 2-118 (198)
86 cd01999 Argininosuccinate_Synt 98.4 1.3E-06 2.8E-11 88.3 11.3 108 228-345 1-116 (385)
87 PRK13981 NAD synthetase; Provi 98.4 1.6E-06 3.5E-11 92.8 12.4 137 207-354 260-405 (540)
88 cd01997 GMP_synthase_C The C-t 98.4 7.5E-07 1.6E-11 86.9 8.9 108 227-348 1-113 (295)
89 PLN00200 argininosuccinate syn 98.4 1.4E-06 3.1E-11 88.1 10.8 111 226-345 6-123 (404)
90 PRK00074 guaA GMP synthase; Re 98.4 2.2E-06 4.8E-11 90.5 12.1 126 208-348 199-329 (511)
91 cd01986 Alpha_ANH_like Adenine 98.4 1.7E-06 3.7E-11 71.1 8.5 76 228-350 1-76 (103)
92 PRK00768 nadE NAD synthetase; 98.4 3.6E-06 7.9E-11 80.5 11.6 142 210-354 21-170 (268)
93 COG0037 MesJ tRNA(Ile)-lysidin 98.4 1.9E-06 4.1E-11 85.2 9.9 124 210-348 6-133 (298)
94 PLN02347 GMP synthetase 98.3 2.5E-06 5.5E-11 90.0 10.5 123 214-349 218-349 (536)
95 KOG2805 tRNA (5-methylaminomet 98.3 3.9E-06 8.4E-11 79.5 10.2 118 226-353 6-139 (377)
96 cd01992 PP-ATPase N-terminal d 98.3 2E-06 4.4E-11 78.6 7.7 105 227-348 1-109 (185)
97 PRK01565 thiamine biosynthesis 98.3 3.4E-06 7.4E-11 86.3 9.8 109 223-348 174-292 (394)
98 TIGR00032 argG argininosuccina 98.3 4.5E-06 9.7E-11 84.6 10.1 108 227-345 1-116 (394)
99 PF01171 ATP_bind_3: PP-loop f 98.2 2.9E-06 6.3E-11 77.4 7.4 104 227-348 1-109 (182)
100 PRK08384 thiamine biosynthesis 98.2 9.3E-06 2E-10 82.0 10.7 112 223-348 178-297 (381)
101 TIGR00342 thiazole biosynthesi 98.2 5.9E-06 1.3E-10 83.9 8.6 112 223-348 170-288 (371)
102 PRK02628 nadE NAD synthetase; 98.1 1.6E-05 3.5E-10 87.0 12.2 144 207-356 341-495 (679)
103 cd01995 ExsB ExsB is a transcr 98.1 1.1E-05 2.4E-10 72.6 8.9 87 227-348 1-89 (169)
104 COG2117 Predicted subunit of t 98.1 1.1E-05 2.4E-10 69.1 8.2 62 227-298 2-63 (198)
105 cd01994 Alpha_ANH_like_IV This 98.1 2.1E-05 4.5E-10 72.3 9.9 92 227-347 1-100 (194)
106 TIGR03679 arCOG00187 arCOG0018 98.0 2.4E-05 5.3E-10 73.3 9.7 89 230-347 2-98 (218)
107 cd01713 PAPS_reductase This do 98.0 1.9E-05 4.2E-10 70.8 8.0 115 227-350 1-120 (173)
108 PRK01269 tRNA s(4)U8 sulfurtra 98.0 3.4E-05 7.4E-10 81.1 10.2 111 224-348 176-293 (482)
109 PRK05253 sulfate adenylyltrans 98.0 8.1E-05 1.7E-09 73.0 12.1 108 226-347 28-139 (301)
110 COG0171 NadE NAD synthase [Coe 97.9 0.00014 3.1E-09 69.5 12.0 140 208-354 6-155 (268)
111 COG0121 Predicted glutamine am 97.9 0.00048 1E-08 65.5 15.2 42 43-84 71-116 (252)
112 PRK10660 tilS tRNA(Ile)-lysidi 97.9 7.1E-05 1.5E-09 77.6 10.3 78 214-296 4-85 (436)
113 COG1365 Predicted ATPase (PP-l 97.8 9.2E-05 2E-09 66.6 8.8 127 209-354 34-170 (255)
114 PRK08576 hypothetical protein; 97.8 0.00015 3.3E-09 74.3 11.3 122 209-347 216-342 (438)
115 PF02568 ThiI: Thiamine biosyn 97.8 7E-05 1.5E-09 68.5 7.6 110 225-348 3-121 (197)
116 PF00764 Arginosuc_synth: Argi 97.8 0.00011 2.4E-09 73.8 9.3 109 230-348 2-121 (388)
117 PRK05370 argininosuccinate syn 97.7 0.00048 1E-08 69.8 12.1 117 220-348 6-138 (447)
118 COG0137 ArgG Argininosuccinate 97.5 0.0014 3.1E-08 64.7 12.2 114 225-348 4-128 (403)
119 PLN02339 NAD+ synthase (glutam 97.4 0.00098 2.1E-08 73.1 11.6 90 207-296 328-449 (700)
120 TIGR02039 CysD sulfate adenyly 97.3 0.0015 3.2E-08 63.7 10.2 120 211-348 9-132 (294)
121 COG0519 GuaA GMP synthase, PP- 97.1 0.0035 7.5E-08 59.1 10.0 75 209-293 6-83 (315)
122 PRK02090 phosphoadenosine phos 96.9 0.0029 6.4E-08 60.4 7.9 59 227-295 42-102 (241)
123 KOG0399 Glutamate synthase [Am 96.9 0.0033 7.1E-08 69.4 8.8 133 43-183 285-477 (2142)
124 PRK08557 hypothetical protein; 96.8 0.012 2.5E-07 60.5 11.1 59 225-293 181-241 (417)
125 PF01507 PAPS_reduct: Phosphoa 96.8 0.0036 7.8E-08 56.2 6.8 106 227-348 1-112 (174)
126 COG0301 ThiI Thiamine biosynth 96.7 0.011 2.3E-07 59.4 10.3 112 224-347 174-291 (383)
127 PRK12563 sulfate adenylyltrans 96.7 0.012 2.7E-07 57.6 10.4 108 226-347 38-149 (312)
128 PRK13795 hypothetical protein; 96.3 0.023 5E-07 61.9 10.5 60 225-294 243-304 (636)
129 cd01984 AANH_like Adenine nucl 96.2 0.017 3.6E-07 45.4 6.5 34 228-268 1-34 (86)
130 PRK13794 hypothetical protein; 96.1 0.054 1.2E-06 56.9 11.8 60 225-293 247-308 (479)
131 TIGR00289 conserved hypothetic 96.0 0.075 1.6E-06 49.7 10.9 60 227-296 2-68 (222)
132 KOG1706 Argininosuccinate synt 96.0 0.027 5.9E-07 53.7 7.8 56 226-291 6-61 (412)
133 TIGR02057 PAPS_reductase phosp 95.8 0.097 2.1E-06 49.3 10.7 64 225-297 25-90 (226)
134 TIGR00434 cysH phosophoadenyly 95.8 0.074 1.6E-06 49.7 9.9 58 226-293 14-73 (212)
135 PRK06850 hypothetical protein; 95.3 0.23 5.1E-06 52.0 12.5 134 213-348 21-172 (507)
136 TIGR03183 DNA_S_dndC putative 95.1 0.17 3.7E-06 52.4 10.8 123 223-347 11-150 (447)
137 COG3969 Predicted phosphoadeno 95.1 0.12 2.6E-06 50.4 8.7 56 223-283 25-82 (407)
138 COG0175 CysH 3'-phosphoadenosi 94.6 0.27 5.8E-06 47.5 10.1 59 226-294 40-100 (261)
139 KOG1622 GMP synthase [Nucleoti 94.5 0.19 4.2E-06 50.7 8.7 69 218-295 224-294 (552)
140 COG2102 Predicted ATPases of P 93.2 0.97 2.1E-05 41.8 10.2 60 227-296 2-69 (223)
141 TIGR00290 MJ0570_dom MJ0570-re 90.2 1.2 2.6E-05 41.7 7.6 57 228-294 3-66 (223)
142 PF01902 ATP_bind_4: ATP-bindi 90.1 0.48 1.1E-05 44.3 5.0 59 227-295 2-67 (218)
143 KOG2303 Predicted NAD synthase 88.1 2.5 5.4E-05 43.4 8.5 70 227-296 351-449 (706)
144 KOG2840 Uncharacterized conser 77.0 6.2 0.00013 38.6 6.0 119 223-348 49-176 (347)
145 PF08057 Ery_res_leader2: Eryt 65.6 3.5 7.6E-05 19.8 0.8 14 388-401 1-14 (14)
146 TIGR02055 APS_reductase thiore 53.2 26 0.00057 31.9 5.1 50 235-294 2-53 (191)
147 PF02677 DUF208: Uncharacteriz 52.4 75 0.0016 28.6 7.6 97 231-341 4-110 (176)
148 PLN02309 5'-adenylylsulfate re 51.8 64 0.0014 33.8 8.2 57 226-293 111-169 (457)
149 COG1856 Uncharacterized homolo 48.6 17 0.00036 33.8 2.9 18 224-241 53-70 (275)
150 TIGR00424 APS_reduc 5'-adenyly 45.4 86 0.0019 32.9 8.0 57 226-293 116-174 (463)
151 COG0041 PurE Phosphoribosylcar 35.5 1.1E+02 0.0024 26.8 5.7 58 273-351 13-73 (162)
152 COG0367 AsnB Asparagine syntha 33.9 25 0.00055 37.8 2.0 47 385-434 419-465 (542)
153 PF07287 DUF1446: Protein of u 24.6 7.5E+02 0.016 25.1 11.6 43 206-249 52-94 (362)
154 cd00713 GltS Glutamine amidotr 23.0 94 0.002 32.1 3.8 34 2-35 1-35 (413)
155 PRK03359 putative electron tra 21.6 3.4E+02 0.0073 26.1 7.1 57 229-291 84-144 (256)
156 PLN02360 probable 6-phosphoglu 20.9 84 0.0018 30.3 2.9 32 205-236 21-52 (268)
157 PF13519 VWA_2: von Willebrand 20.9 5.2E+02 0.011 21.9 8.9 70 225-303 99-169 (172)
No 1
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=1.9e-102 Score=818.20 Aligned_cols=474 Identities=58% Similarity=1.018 Sum_probs=424.8
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEECCEEEEEeeeeecCCCCCCCCceeCCCcEEEEEeeEEcC
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~n 80 (493)
||||+|+++.+.........+.+|+.+|+|||||++|++..++++|||+||+|+|...+.||+.++++++++++||||||
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~RLsIid~~~g~QP~~~~~~~~~lv~NGEIyN 80 (554)
T PRK09431 1 MCGIFGILDIKTDADELRKKALEMSRLMRHRGPDWSGIYASDNAILGHERLSIVDVNGGAQPLYNEDGTHVLAVNGEIYN 80 (554)
T ss_pred CceEEEEEcCCCcchhHHHHHHHHHHHhhCCCCCcCCEEEeCCeEEEEEEeeecCCCCCCCCCCcCCCCEEEEEEEEEec
Confidence 99999999765433222467889999999999999999999999999999999998789999999999999999999999
Q ss_pred hHHHHHHh-cCCCccCCCHHHHHHHHHHHHhHhHHhhccccEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEe
Q 011115 81 HEALRERL-TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISS 159 (493)
Q Consensus 81 ~~el~~~l-~~~~~~~~~D~e~i~~~~~~~g~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faS 159 (493)
+.||+++| ..+.|++.||+|+|+++|++||.+++++|+|+|||++||..+++++++||++|+|||||+...++.++|||
T Consensus 81 ~~eLr~~L~~~~~f~t~sD~Evil~ly~~~G~~~~~~L~G~FAf~i~D~~~~~l~laRD~~GikPLyy~~~~~~~~~faS 160 (554)
T PRK09431 81 HQELRAELGDKYAFQTGSDCEVILALYQEKGPDFLDDLDGMFAFALYDSEKDAYLIARDPIGIIPLYYGYDEHGNLYFAS 160 (554)
T ss_pred HHHHHHHHhccCCcCCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEEECCCCEEEEEeCCCCCcceEEEEeCCCeEEEec
Confidence 99999999 45789999999999999999999999999999999999999999999999999999999885448899999
Q ss_pred CcchhccccCCcEEeCCCcEEEecCCceeeeeCCCCCCC-CCCCCCCcHHHHHHHHHHHHHHhhccCcceEEEecCCcch
Q 011115 160 ELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYSE-AIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDS 238 (493)
Q Consensus 160 e~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDS 238 (493)
|+|+|...+++|++|||||++.++.++..+||++.+... ..++.++++++++++|.+||++|+.+|+|||++||||+||
T Consensus 161 E~kaL~~~~~~I~~lpPGh~l~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvGv~LSGGLDS 240 (554)
T PRK09431 161 EMKALVPVCKTIKEFPPGHYYWSKDGEFVRYYQRDWFDYDAVKDNVTDKNELRDALEAAVKKRLMSDVPYGVLLSGGLDS 240 (554)
T ss_pred chHHHHHhcCCEEEECCCeEEEECCCcEEEecCCCcccccccCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEcCCCccH
Confidence 999999999999999999999877667889999876332 2233445678999999999999999999999999999999
Q ss_pred hHHHHHHHHHhccccc----ccccCCcceeeeeccCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHHHHHHHHhhcccc
Q 011115 239 SLVASITARHLAGTKA----ARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYD 314 (493)
Q Consensus 239 s~iaa~a~~~~~~~~~----~~~~~~~~~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 314 (493)
|+||++|++...+... ...|..+++|||+++++++|..+|+++|+++|++||++.++.++.++.++++++++++++
T Consensus 241 SlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~~h~~v~~t~~e~~~~l~~vi~~le~~d 320 (554)
T PRK09431 241 SLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLEGSPDLKAAREVADHLGTVHHEIHFTVQEGLDALRDVIYHLETYD 320 (554)
T ss_pred HHHHHHHHHhhcccccccccccccCCCceEEEEeCCCCChHHHHHHHHHHhCCccEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 9999999987532100 012224799999999999999999999999999999999999999999999999999987
Q ss_pred cccccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcccccCCChhHHhHHHHHHHHhhcccccccccccccccCcee
Q 011115 315 VTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEA 394 (493)
Q Consensus 315 ~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~~~~~~~~~~~~~e~~~~~~~l~~~~l~r~dr~~~~~gie~ 394 (493)
+..+.+++++|++++.+++.|++|+|||+||||+||||.+|+.+|+...|..+..+++..++..+|.|.||++|++|+|+
T Consensus 321 p~~~~~~~p~yll~~~~~~~gvkvvLsGeGaDElFgGY~~~~~~p~~~~~~~e~~~~~~~l~~~~l~r~Dr~~ma~glE~ 400 (554)
T PRK09431 321 VTTIRASTPMYLMARKIKAMGIKMVLSGEGADELFGGYLYFHKAPNAKEFHEETVRKLRALHMYDCLRANKAMMAWGVEA 400 (554)
T ss_pred CccchhHHHHHHHHHHHHHcCCEEEEecCchhhhhcCchhhhhCCChhhcCHHHHHHHHHHHHHhhhccchhhhhcCcee
Confidence 77778889999999998788999999999999999999999888776677778888888888889999999999999999
Q ss_pred ccccCChHHHHHHHcCCccccccCCCCCCcchHHHHHhhccCCCCCCChhhhcccCCCCCCCCchhhHHHHHHHHHhhcC
Q 011115 395 RVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVH 474 (493)
Q Consensus 395 r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~iLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~~~~~~~~~l~ 474 (493)
|+||||++||+++++||+++|+.++. ..+|||||+|+++ +||++|+||+|.||+.|++..|++.++++++++++
T Consensus 401 RvPFLD~~lv~~a~~ip~~~K~~~~~--~~~K~iLR~a~~~----~LP~~I~~R~K~~f~~~~g~~w~~~l~~~~~~~~~ 474 (554)
T PRK09431 401 RVPFLDKEFLDVAMRINPEDKMCGNG--KMEKHILREAFEG----YLPESILWRQKEQFSDGVGYSWIDTLKEVAAEQVS 474 (554)
T ss_pred ecCcCCHHHHHHHHhCCHHHHhcCCC--CCCHHHHHHHHhh----hCCHHHhCCCCCCCCCCChhHHHHHHHHHHHHHhC
Confidence 99999999999999999999998521 2489999999999 99999999999999999987899999999999999
Q ss_pred Cccccc
Q 011115 475 IPSYAD 480 (493)
Q Consensus 475 ~~~l~~ 480 (493)
++.+++
T Consensus 475 ~~~~~~ 480 (554)
T PRK09431 475 DQQLAT 480 (554)
T ss_pred cHHHHH
Confidence 887764
No 2
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=5e-104 Score=754.93 Aligned_cols=478 Identities=67% Similarity=1.139 Sum_probs=446.9
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEECCEEEEEeeeeecCCCCCCCCceeCCCcEEEEEeeEEcC
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~n 80 (493)
||||+.++..+. ..........+...+.|||||.+|.+......++|.||+++++.++.||+++.++.+++..||||||
T Consensus 1 MCGI~Av~~~~~-~~~~~~~~l~ls~~~~hRgpd~sg~~~~~~~~l~heRLAIvdp~sg~QPi~~~~~~~~~~vNGEIYN 79 (543)
T KOG0571|consen 1 MCGILAVLGHED-SEAKKPKALELSRRIRHRGPDWSGLAQRNDNILGHERLAIVDPTSGAQPIVGEDGTYVVTVNGEIYN 79 (543)
T ss_pred CCceeeeecccc-hhhcChhhhhHHHhhcCCCCCcchhheeccccccccceeEecCCcCCcccccCCCcEEEEECceecc
Confidence 999999998332 2222334556677899999999999988878999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCccCCCHHHHHHHHHHHH-hHhHHhhccccEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEe
Q 011115 81 HEALRERLTNHKFRTGSDCDVIAHLYEEY-GENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISS 159 (493)
Q Consensus 81 ~~el~~~l~~~~~~~~~D~e~i~~~~~~~-g~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faS 159 (493)
+.+|+..+..+.|+|.||+|+|+++|+++ +.++...|+|+|||++.|...++++++||++|++||||++..++.++|||
T Consensus 80 H~~Lr~~~~~~~~~T~sDcEvIi~lY~khg~~~~~~~LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~gs~~~aS 159 (543)
T KOG0571|consen 80 HKKLREHCKDFEFQTGSDCEVIIHLYEKHGGEQAICMLDGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDGSVYFAS 159 (543)
T ss_pred HHHHHHHhhhcccccCCCceeeeehHhhcCchhHHHHhhhheEEEEecCCCCeEEeccCCcCceeeEEEecCCCcEEEee
Confidence 99999999889999999999999999999 69999999999999999999999999999999999999998889999999
Q ss_pred CcchhccccCCcEEeCCCcEEEecCCceeeeeCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhccCcceEEEecCCcchh
Q 011115 160 ELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSS 239 (493)
Q Consensus 160 e~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs 239 (493)
|.|.|...|+.|...||||++..+.+++.+|++|+|.....|+++.....+|+.|.+||++||.+++|+|++||||||||
T Consensus 160 e~k~l~d~C~~i~~fpPgh~y~~~~~~~~r~f~p~w~~~~~~s~p~d~~~~r~~~~~aV~KRLM~d~p~GvLLSGGLDSS 239 (543)
T KOG0571|consen 160 EMKCLEDDCEKIESFPPGHYYTSKTGKLTRYFNPEWFDENIPSTPLDYLALRHTLEKAVRKRLMTDVPFGVLLSGGLDSS 239 (543)
T ss_pred ehhhhhhhhhceeecCCcceeecccccccCCCCchhhhccCCCCcccHHHHHHHHHHHHHHHhhccCceeEEeeCCchHH
Confidence 99999999999999999999999888899999999988888888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccCCcceeeeeccCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHHHHHHHHhhccccccccc
Q 011115 240 LVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIR 319 (493)
Q Consensus 240 ~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 319 (493)
+||++|++.+.+.+. +.|.++++|++|+++++|...|++||+++|+.||++.++.++.++.++++++++|++++++++
T Consensus 240 LvAsia~R~lk~~~~--~~~~~lhsFaIGle~SPDL~aarkVAd~igt~Hhe~~ft~qegidal~eVI~hLETYDvttIR 317 (543)
T KOG0571|consen 240 LVASIAARELKKAQA--ARGSKLHSFAIGLEDSPDLLAARKVADFIGTIHHEHTFTIQEGIDALDEVIYHLETYDVTTIR 317 (543)
T ss_pred HHHHHHHHHHHHhhh--hcCCCceEEEecCCCChhHHHHHHHHHHhCCcceEEEEcHHHHHHHHHHHheeeeccccceEe
Confidence 999999998865322 125689999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCeEEEeccCccccccCCcccccCCChhHHhHHHHHHHHhhcccccccccccccccCceeccccC
Q 011115 320 ASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFL 399 (493)
Q Consensus 320 ~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~~~~~~~~~~~~~e~~~~~~~l~~~~l~r~dr~~~~~gie~r~Pfl 399 (493)
++++||+++++++++|++|+|||+|+||+||||.+|+++|+.+.|++|..++++.||.++++|.|+.+|+||+|+|+|||
T Consensus 318 astpmyLlsr~Ikk~gvkmvlSGEGsDEifggYlYfh~APs~~~fh~E~~rrvk~Lh~~DcLRankST~a~GlE~RVPFL 397 (543)
T KOG0571|consen 318 ASTPMYLLSRKIKKLGVKMVLSGEGSDEIFGGYLYFHKAPSAEEFHEESVRRVKHLHLYDCLRANKSTMAHGLEARVPFL 397 (543)
T ss_pred cCCchHHHHHHHHhcceEEEEecCCchhhhcceeeeecCCCHHHHHHHHHHHHHHHHHHHHhhcCccccccceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHcCCccccccCCCCCCcchHHHHHhhccCCCCCCChhhhcccCCCCCCCCchhhHHHHHHHHHhhcCCcccc
Q 011115 400 DKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVHIPSYA 479 (493)
Q Consensus 400 D~~lve~~~~lP~~~k~~~~~~~~~~K~iLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~~~~~~~~~l~~~~l~ 479 (493)
|.+++++|++|||++|+.....++++||+||.|+...++|+||++|+||+|.+|..+++++|++.|++.++..++|..++
T Consensus 398 Dk~F~~~~~sldPe~K~~k~~~~r~eK~vlrsafd~~~~pyLP~eilwrqkeqfsdgVgySwid~L~d~~e~~isd~m~a 477 (543)
T KOG0571|consen 398 DKRFLELAMSLDPEEKMIKPKEGRIEKYVLRSAFDTTEKPYLPDEILWRQKEQFSDGVGYSWIDGLKDHAEKQISDAMFA 477 (543)
T ss_pred cHHHHHHHhcCChhHhcCCcchhhHHHHHHHhhcCCcCCCcChHHHHHHHHhhhccccchHHHHHHHHHHHHhcCHHHHh
Confidence 99999999999999999775446789999999999999999999999999999999999999999999999999988776
Q ss_pred cC
Q 011115 480 DF 481 (493)
Q Consensus 480 ~~ 481 (493)
+.
T Consensus 478 ~a 479 (543)
T KOG0571|consen 478 NA 479 (543)
T ss_pred Ch
Confidence 63
No 3
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=3.3e-102 Score=816.79 Aligned_cols=480 Identities=86% Similarity=1.421 Sum_probs=428.4
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEECCEEEEEeeeeecCCCCCCCCceeCCCcEEEEEeeEEcC
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~n 80 (493)
||||+|+++.+.........+.+|+..|+|||||++|++..++++|||+||+|+|...+.||+.++++++++++||||||
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~Lgh~RLsI~d~~~g~QP~~~~~~~~~lv~NGEIyN 80 (578)
T PLN02549 1 MCGILAVLGCSDDSQAKRSRVLELSRRLRHRGPDWSGLYGNEDCYLAHERLAIMDPESGDQPLYNEDKTIVVTANGEIYN 80 (578)
T ss_pred CCcEEEEEeCCCCcchhHHHHHHHHHHhcCcCCCccCEEEeCCeEEEEeeeeEeCCCCCCCCcCcCCCCEEEEEEEEEEc
Confidence 99999999765433223456789999999999999999999999999999999998789999999989999999999999
Q ss_pred hHHHHHHhcCCCccCCCHHHHHHHHHHHHhHhHHhhccccEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeC
Q 011115 81 HEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160 (493)
Q Consensus 81 ~~el~~~l~~~~~~~~~D~e~i~~~~~~~g~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe 160 (493)
+.+|+++|..+.|++.||+|+|+++|++||.+++++|+|+|||++||..+++++++||++|+|||||++..++.++||||
T Consensus 81 ~~eLr~~L~~~~f~t~sD~Evil~ly~~~G~~~~~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyyg~~~~g~~~fASE 160 (578)
T PLN02549 81 HKELREKLKLHKFRTGSDCEVIAHLYEEHGEEFVDMLDGMFSFVLLDTRDNSFIAARDHIGITPLYIGWGLDGSVWFASE 160 (578)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEEECCCCEEEEEECCCCCCCeEEEEecCCeEEEEec
Confidence 99999999548899999999999999999999999999999999999998999999999999999998754678999999
Q ss_pred cchhccccCCcEEeCCCcEEEecCCceeeeeCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhccCcceEEEecCCcchhH
Q 011115 161 LKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSL 240 (493)
Q Consensus 161 ~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~ 240 (493)
+|+|...+++|++|||||++.++.++..+||++.+.....++.++..++++++|.+||++|+.+|+|||++||||+|||+
T Consensus 161 ~KaL~~~~~~I~~lpPGh~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGLDSSl 240 (578)
T PLN02549 161 MKALCDDCERFEEFPPGHYYSSKAGGFRRWYNPPWFSESIPSTPYDPLVLREAFEKAVIKRLMTDVPFGVLLSGGLDSSL 240 (578)
T ss_pred HHHHHHHhCCEEEeCCCeEEEEcCCCEEEEEecccCccccCCchhHHHHHHHHHHHHHHHHhccCCceeEeecCCccHHH
Confidence 99999999999999999999887666889999876543334445677899999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccCCcceeeeeccCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHHHHHHHHhhcccccccccc
Q 011115 241 VASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRA 320 (493)
Q Consensus 241 iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 320 (493)
|+++|++...+......|+.+++|||+++++++|..+|+++|+++|++|+++.++.++..+.+++++++++++++..+..
T Consensus 241 Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~Ar~vA~~lg~~h~ev~~~~~e~~~~l~~~i~~le~~dp~~~~~ 320 (578)
T PLN02549 241 VASIAARHLAETKAARQWGQQLHSFCVGLEGSPDLKAAREVADYLGTVHHEFHFTVQEGIDAIEDVIYHLETYDVTTIRA 320 (578)
T ss_pred HHHHHHHhhhhcccccccCCCceEEecCCCCCCHHHHHHHHHHHhCCCCeEEEEChHHHHHHHHHHHHHhcCCCCccchh
Confidence 99999987543211111224799999999999999999999999999999999999999999999999999987767777
Q ss_pred hHHHHHHHHHHHhCCCeEEEeccCccccccCCcccccCCChhHHhHHHHHHHHhhcccccccccccccccCceeccccCC
Q 011115 321 STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLD 400 (493)
Q Consensus 321 ~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~~~~~~~~~~~~~e~~~~~~~l~~~~l~r~dr~~~~~gie~r~PflD 400 (493)
++++|++++.+++.|++|+|||+||||+||||.+|+.+|+...|+.++.++++.++..++.|.||++|++|+|+|+||||
T Consensus 321 s~p~yll~r~a~~~gvkVvLsGeGaDElFgGY~~~~~ap~~~~~~~e~~~~~~~l~~~~l~r~Dr~~ma~glE~RvPFLD 400 (578)
T PLN02549 321 STPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEEFHKETCRKIKALHQYDCLRANKSTSAWGLEARVPFLD 400 (578)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCchHhhhcChHhhhhCCCHHHHHHHHHHHHHHHhhhhccccchhhhhcCceEECCcCC
Confidence 89999999999999999999999999999999999888876678888888888888889999999999999999999999
Q ss_pred hHHHHHHHcCCccccccCCCCCCcchHHHHHhhccCCCCCCChhhhcccCCCCCCCCchhhHHHHHHHHHhhcCCccccc
Q 011115 401 KDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVHIPSYAD 480 (493)
Q Consensus 401 ~~lve~~~~lP~~~k~~~~~~~~~~K~iLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~~~~~~~~~l~~~~l~~ 480 (493)
++||+++++||+++|+.+..++..+|||||+|+++...++||++|+||+|.||+.|+++.|++.+++++++.++|+.++.
T Consensus 401 ~~~v~~a~~ip~~~k~~~~~~~~~eK~iLR~a~~~~~~~~LP~~Il~R~K~~f~~~~g~~w~~~l~~~~~~~~~d~~~~~ 480 (578)
T PLN02549 401 KEFIDVAMSIDPEWKMIRPGEGRIEKWVLRKAFDDEEDPYLPKHILWRQKEQFSDGVGYSWIDGLKAHAEKHVSDEMFAN 480 (578)
T ss_pred HHHHHHHHhCCHHHHhcCCCCCCCchHHHHHHHhhcCcccCCHHHhCCCccCCCCCCcchHHHHHHHHHHHHcCHHHHHH
Confidence 99999999999999997622223589999999986223379999999999999999988999999999999999887765
No 4
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=100.00 E-value=4.9e-102 Score=817.89 Aligned_cols=481 Identities=59% Similarity=1.048 Sum_probs=425.3
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEE-----CCEEEEEeeeeecCCCCCCCCceeCCCcEEEEEe
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH-----GDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVN 75 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~-----~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~n 75 (493)
||||+|+++........+..+.+|+.+|+|||||++|++.. +++++||+||+|+|...+.||+.+++++++++||
T Consensus 1 MCGI~gi~~~~~~~~~~~~~~~~m~~~l~HRGPD~~g~~~~~~~~~~~~~lgh~RLsIvd~~~g~QP~~~~d~~~~lv~N 80 (586)
T PTZ00077 1 MCGILAIFNSKGERHELRRKALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVDLSDGKQPLLDDDETVALMQN 80 (586)
T ss_pred CceEEEEEecCCchhhHHHHHHHHHHHHhCCCCCcCCEEEeccCCCCcEEEEeccceecCCCCCCCCcCCCCCCEEEEEE
Confidence 99999999765433323456778999999999999999986 5789999999999987899999999999999999
Q ss_pred eEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHHHhH-hHHhhccccEEEEEEECCCCEEEEEecCCCCceEEEEEecC
Q 011115 76 GEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE-NFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLD 152 (493)
Q Consensus 76 G~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~~g~-~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~ 152 (493)
|||||+.+|+++| .|+.|++.||+|+|+++|++||. +++++|+|+|||++||..+++++++||++|+|||||+...+
T Consensus 81 GEIYN~~eLr~~L~~~g~~f~t~sD~Evil~ly~~~G~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyy~~~~~ 160 (586)
T PTZ00077 81 GEIYNHWEIRPELEKEGYKFSSNSDCEIIGHLYKEYGPKDFWNHLDGMFATVIYDMKTNTFFAARDHIGIIPLYIGYAKD 160 (586)
T ss_pred EEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhCHHHHHHhcCCCEEEEEEECCCCEEEEEECCCCCcCeEEEEecC
Confidence 9999999999999 57999999999999999999999 99999999999999999999999999999999999987446
Q ss_pred cEEEEEeCcchhccccCCcEEeCCCcEEEecC--CceeeeeCCCCCCC--CCCCCCCcHHHHHHHHHHHHHHhhccCcce
Q 011115 153 GSIWISSELKGLNDDCEHFEAFPPGHLYSSKS--GGLKRWYNPTWYSE--AIPSTPYDPLVLRQAFENAVIKRLMTDVPF 228 (493)
Q Consensus 153 ~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v 228 (493)
+.++||||+|+|...+.+|++|||||++.++. ...++||+|.+... ..++.++.+++++++|.+||++|+.+++||
T Consensus 161 g~~~faSE~kaL~~~~~~I~~lpPGh~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~lr~~L~~AV~~rl~sdvpv 240 (586)
T PTZ00077 161 GSIWFSSELKALHDQCVEVKQFPPGHYYDQTKEKGEFVRYYNPNWHDFDHPIPTGEIDLEEIREALEAAVRKRLMGDVPF 240 (586)
T ss_pred CeEEEEecHHHHHHhcCCEEEeCCCcEEEecCCcceeEEecCCcccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 78999999999999999999999999998864 35789999876532 133445567899999999999999999999
Q ss_pred EEEecCCcchhHHHHHHHHHhcccc--cccccCCcceeeeeccCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHHHHHH
Q 011115 229 GVLLSGGLDSSLVASITARHLAGTK--AARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEV 306 (493)
Q Consensus 229 ~v~LSGGlDSs~iaa~a~~~~~~~~--~~~~~~~~~~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~ 306 (493)
|++||||+|||+|+++|++...+.. -.+.+..+++|||+++++++|..+|+++|+++|++|+++.++.++.++.++++
T Consensus 241 Gv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~Ar~vA~~lg~~h~~i~~~~~e~~~~l~~~ 320 (586)
T PTZ00077 241 GLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGLEGSPDLKAARKVAEYLGTEHHEFTFTVEEGIDALPDV 320 (586)
T ss_pred EEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcCCCCCchHHHHHHHHHHhCCcCcEEEECHHHHHHHHHHH
Confidence 9999999999999999998753210 00011247999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcccccCCChhHHhHHHHHHHHhhccccccccccc
Q 011115 307 IYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKS 386 (493)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~~~~~~~~~~~~~e~~~~~~~l~~~~l~r~dr~ 386 (493)
++++++|+.+.++.++++|++++.+++.|++|+|||+||||+||||.+|+.+|+...|+.++.++++.++.++|.|.||+
T Consensus 321 i~~le~~~~~~~~~~~p~yll~r~a~~~gvkVvLsGeGaDElFgGY~~~~~ap~~~~~~~e~~~~l~~l~~~~l~r~Dr~ 400 (586)
T PTZ00077 321 IYHTETYDVTTIRASTPMYLLSRRIKALGIKMVLSGEGSDELFGGYLYFHKAPNREEFHRELVRKLHDLHKYDCLRANKA 400 (586)
T ss_pred HHHhcCCCCCCcchHHHHHHHHHHHHhcCCeEEEecCchhhhccCcHhhhhCcchHHHHHHHHHHHHHHhccCCchhhHH
Confidence 99999998777788899999999999999999999999999999999998888766678777777888888899999999
Q ss_pred ccccCceeccccCChHHHHHHHcCCccccccCCCCCCcchHHHHHhhccCCCCCCChhhhcccCCCCCCCCchhhHHHHH
Q 011115 387 TSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLK 466 (493)
Q Consensus 387 ~~~~gie~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~iLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~~~~ 466 (493)
+|++|+|+|+||||++||+++++||+++|+.+...+..+|||||+||++..+++||++|+||+|.||+.|++..|++.++
T Consensus 401 ~ma~glE~RvPFLD~~~v~~a~~ip~~~K~~~~~~~~~~K~iLR~a~~~~~~~~LP~~I~~R~K~~F~~~~g~~w~~~l~ 480 (586)
T PTZ00077 401 TMAWGIEARVPFLDKDFLEYVMNIDPKYKMCNAFEGQMEKYILRKAFEGLEKPYLPDEILWRQKEQFSDGVGYSWIDGLK 480 (586)
T ss_pred HHhcCceeecCcCCHHHHHHHHhCCHHHhcCCCCCCCCCHHHHHHHHhccCcCcCCHHHhCCcccCCCCCCchhHHHHHH
Confidence 99999999999999999999999999999986311235899999999863234799999999999999999878999999
Q ss_pred HHHHhhcCCcccccC
Q 011115 467 AHAEQHVHIPSYADF 481 (493)
Q Consensus 467 ~~~~~~l~~~~l~~~ 481 (493)
++++++++++.++..
T Consensus 481 ~~~~~~~~~~~~~~~ 495 (586)
T PTZ00077 481 EYAEKKISDQEFSQA 495 (586)
T ss_pred HHHHHHhChHHHHHH
Confidence 999999999887654
No 5
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=3.1e-93 Score=758.29 Aligned_cols=465 Identities=29% Similarity=0.504 Sum_probs=394.4
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEECCEEEEEeeeeecCCC-CCCCCceeCCCcEEEEEeeEEc
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPA-SGDQPLYNEDKKIVVTVNGEIY 79 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~-~~~qP~~~~~~~~~~~~nG~i~ 79 (493)
||||+|++..++... ....+..|+++|+|||||++|++..+++++||+||+|++.+ .+.||+.+++++++++||||||
T Consensus 1 McGI~G~~~~~~~~~-~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~rl~i~~~~~~~~QP~~~~~~~~~~v~nGeiy 79 (589)
T TIGR03104 1 MCGICGEIRFDGQAP-DVAAVVRMLAVLAPRGPDAGGVHAQGPVALGHRRLKIIDLSEASQQPMVDAELGLALVFNGCIY 79 (589)
T ss_pred CcEEEEEEecCCCcc-hHHHHHHHHHhhcCCCCCcCCcEecCCEEEEEEeeEecCCCcCCCCCeECCCCCEEEEECCEec
Confidence 999999997654332 24668899999999999999999999999999999999864 6899999988899999999999
Q ss_pred ChHHHHHHh--cCCCccCCCHHHHHHHHHHHHhHhHHhhccccEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEE
Q 011115 80 NHEALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWI 157 (493)
Q Consensus 80 n~~el~~~l--~~~~~~~~~D~e~i~~~~~~~g~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~f 157 (493)
|+.||+++| .|+.|.+.||+|+|+++|++||.+++++|+|+|||++||+.+++++++|||+|+|||||+.. ++.++|
T Consensus 80 N~~eL~~~l~~~g~~f~~~sD~Evil~~y~~~G~~~~~~l~G~fa~~i~d~~~~~l~laRD~~G~kPLyy~~~-~~~~~f 158 (589)
T TIGR03104 80 NYRELRAELEALGYRFFSDGDTEVILKAYHAWGRDCVSRFNGMFAFAIWERDSGRLLLARDRLGIKPLYYAED-AGRLRF 158 (589)
T ss_pred CHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHHHHHHHhhcceEEEEEeCCCCEEEEEecCCCCCCeEEEEe-CCEEEE
Confidence 999999999 58899999999999999999999999999999999999999999999999999999999985 788999
Q ss_pred EeCcchhccc----------------------------cCCcEEeCCCcEEEec-CC--ceeeeeCCCCCCC---CCCCC
Q 011115 158 SSELKGLNDD----------------------------CEHFEAFPPGHLYSSK-SG--GLKRWYNPTWYSE---AIPST 203 (493)
Q Consensus 158 aSe~~~l~~~----------------------------~~~i~~l~pG~~~~~~-~~--~~~~~~~~~~~~~---~~~~~ 203 (493)
|||+++|+.. +++|++|||||++.++ .+ ...+||++..... ...+.
T Consensus 159 aSe~kaLl~~~~~~~~~d~~~l~~~l~~~~~~~~~~T~~~gI~~l~pG~~l~i~~~~~~~~~~yw~~~~~~~~~~~~~~~ 238 (589)
T TIGR03104 159 ASSLPALLAAGGVDTDIDPVALHHYLTFHAVVPAPHTILKGVRKLPPATWMTVEPDGSRTQRSYWSLDAGRPADDAARTE 238 (589)
T ss_pred EeCHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCCCchhhCceeeCCCcEEEEECCCCeEEEeeccCCCCcccccCCCCH
Confidence 9999998642 4689999999999886 33 2568999864321 11233
Q ss_pred CCcHHHHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCC-----CcHHHH
Q 011115 204 PYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-----PDLKYA 278 (493)
Q Consensus 204 ~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~-----~d~~~A 278 (493)
++.+++++++|.+||++|+.+++|||++||||+|||+|++++++.. ..++.|||+++++. +|..+|
T Consensus 239 ~~~~~~l~~~L~~AV~~rl~sd~pvg~~LSGGlDSs~Iaa~~~~~~---------~~~l~tftigf~~~~~~~~dE~~~A 309 (589)
T TIGR03104 239 ADWQDAILEALRLAVKRRLVADVPVGVLLSGGLDSSLIVGLLAEAG---------VDGLRTFSIGFEDVGGEKGDEFEYS 309 (589)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCceeEEecCCccHHHHHHHHHHhc---------CCCceEEEEEecCCCCCCCChHHHH
Confidence 4456889999999999999999999999999999999999988764 24799999999753 799999
Q ss_pred HHHHHHhCCcceEEEeChhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcccccC
Q 011115 279 KEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKA 358 (493)
Q Consensus 279 ~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~~~~~ 358 (493)
+++|+++|++||++.++++++.+.+++++++.+.|.. ..+.+++|.+++.+++ +++|+|||+||||+||||++|...
T Consensus 310 ~~vA~~~g~~h~~i~~~~~~~~~~l~~~v~~~~~P~~--~~~~~~~~~l~~~a~~-~~kV~LsGeGaDElFgGY~~~~~~ 386 (589)
T TIGR03104 310 DIIAERFHTRHHKIRIPNHRVLPALPEAVAAMSEPMV--SHDCVAFYLLSEEVSK-HVKVVQSGQGADEVFGGYHWYPPL 386 (589)
T ss_pred HHHHHHhCCcCeEEEcCHHHHHHHHHHHHHHhCCCCC--CchHHHHHHHHHHHhC-CCeEEeecCchHhcccCcHhHHHH
Confidence 9999999999999999999999999999998877642 2345778888888766 699999999999999999876421
Q ss_pred ------CCh-----------hHH----hH---------HH-------------HHH-----HHh-hcccccccccccccc
Q 011115 359 ------PNK-----------EEF----HR---------ET-------------CHK-----IKA-LHQYDCLRANKSTSA 389 (493)
Q Consensus 359 ------~~~-----------~~~----~~---------e~-------------~~~-----~~~-l~~~~l~r~dr~~~~ 389 (493)
|.. ..+ .. ++ ..+ ++. +....|.|.||++|+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~l~~~~L~~~Dr~sMa 466 (589)
T TIGR03104 387 AAGAGDPVAAYRRAFFDRDHAEYLEMVGPRFHAEDVSGEFVADHFARPGADTAVDQALRLDTTVMLVDDPVKRVDNMTMA 466 (589)
T ss_pred HhhccCchHHHHHHHhccCHHHHHHHhhhhhhccchhHHHHHHHhhcccCCCHHHHHHHHHHHHhCccccccchhhhhhh
Confidence 100 000 00 00 000 000 111235689999999
Q ss_pred cCceeccccCChHHHHHHHcCCccccccCCCCCCcchHHHHHhhccCCCCCCChhhhcccCCCCCCCCchhhHH-HHHHH
Q 011115 390 WGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWID-GLKAH 468 (493)
Q Consensus 390 ~gie~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~iLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~-~~~~~ 468 (493)
+|+|+|+||||++||||+++||+++|+.++ +|+|||+++++ +||++|++|+|+||+.|.+ .|++ .++++
T Consensus 467 ~svE~R~PFLD~~lve~a~~lP~~~k~~~~-----~K~iLR~a~~~----~lP~~i~~R~K~gf~~P~~-~w~~~~l~~~ 536 (589)
T TIGR03104 467 WGLEARVPFLDHELVELAARIPPELKLADG-----GKGVLKEAARG----VIPSEVIDRPKGYFPVPAL-KYLRGPFLEW 536 (589)
T ss_pred ccccccCCccCHHHHHHHHhCCHHHhcCCC-----cCHHHHHHHhh----hCCHHHhCCCCCCCCCcHH-HHhhhHHHHH
Confidence 999999999999999999999999999773 69999999999 9999999999999999986 8986 79999
Q ss_pred HHhhcCCcccccCCcccccce
Q 011115 469 AEQHVHIPSYADFSIFISQFC 489 (493)
Q Consensus 469 ~~~~l~~~~l~~~gl~d~~~~ 489 (493)
++++|.++.+...|+||++.+
T Consensus 537 ~~~~l~~~~~~~~~~~~~~~v 557 (589)
T TIGR03104 537 VRDALTSPAARERGLFQRAYV 557 (589)
T ss_pred HHHHhCccchhhcCccCHHHH
Confidence 999999988889999998765
No 6
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=100.00 E-value=3.4e-88 Score=729.71 Aligned_cols=467 Identities=31% Similarity=0.531 Sum_probs=388.9
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEECCEEEEEeeeeecCCCCCCCCceeCCCcEEEEEeeEEcC
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~n 80 (493)
||||+|+++.++........+..|+++|.|||||++|+|..+++++||+|++|++...+.||+.+++++++++|||||||
T Consensus 1 McGI~G~~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGei~N 80 (628)
T TIGR03108 1 MCGITGIFDLTGQRPIDRDLLRRMNDAQAHRGPDGGGVHVEPGIGLGHRRLSIIDLSGGQQPLFNEDGSVVVVFNGEIYN 80 (628)
T ss_pred CCEEEEEEECCCCccccHHHHHHHHHHhcCCCCCccCeEeeCCEEEEEEeeeecCCCCCCCCcCcCCCCEEEEECCeECC
Confidence 99999999755432112356889999999999999999999999999999999987678999999999999999999999
Q ss_pred hHHHHHHh--cCCCccCCCHHHHHHHHHHHHhHhHHhhccccEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEE
Q 011115 81 HEALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWIS 158 (493)
Q Consensus 81 ~~el~~~l--~~~~~~~~~D~e~i~~~~~~~g~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~fa 158 (493)
+.||+++| .|+.|.+.||+|+|+++|++||.+++++|+|+|||++||..+++++++||++|++||||+...++.++||
T Consensus 81 ~~eL~~~l~~~g~~~~~~sD~Evi~~~~~~~g~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLyy~~~~~~~~~fa 160 (628)
T TIGR03108 81 FQELVAELQALGHVFRTRSDTEVIVHAWEEWGEACVERFRGMFAFALWDRNQETLFLARDRLGIKPLYYALLADGWFIFG 160 (628)
T ss_pred HHHHHHHHHhcCCccCCCChHHHHHHHHHHHHHHHHHHcCCCEEEEEEECCCCEEEEEECCCCCcceEEEEeCCCEEEEE
Confidence 99999999 5889999999999999999999999999999999999999999999999999999999986446789999
Q ss_pred eCcchhccc---------------------------cCCcEEeCCCcEEEecCC----ceeeeeCCCCCCCCCCCCCCcH
Q 011115 159 SELKGLNDD---------------------------CEHFEAFPPGHLYSSKSG----GLKRWYNPTWYSEAIPSTPYDP 207 (493)
Q Consensus 159 Se~~~l~~~---------------------------~~~i~~l~pG~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 207 (493)
||+++|... +++|++|||||++.++.+ ..++||++...+....+.++++
T Consensus 161 Se~~al~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~gI~~l~pG~~l~~~~~~~~~~~~~yw~~~~~~~~~~~~~e~~ 240 (628)
T TIGR03108 161 SELKALTAHPSLPRELDPLAVEDYFAYGYVPDPRTIFKGVKKLEPGHTLTLRRGAPPARPRCYWDVSFAPAAPLSEADAL 240 (628)
T ss_pred ecHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCCchhcCcEEECCCeEEEEECCCcceeccccccCCCCCCCCCCHHHHH
Confidence 999988642 479999999999988643 2468999764322222345567
Q ss_pred HHHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC--CCcHHHHHHHHHHh
Q 011115 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYL 285 (493)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~va~~l 285 (493)
++++++|.+||+.|+.+++|||++||||+|||+|++++++.. +.+++|||+++++ .+|..+|+++|+++
T Consensus 241 e~l~~~l~~aV~~rl~~d~~vg~~LSGGlDSs~Iaa~~~~~~---------~~~i~t~s~~~~~~~~dE~~~A~~vA~~~ 311 (628)
T TIGR03108 241 AELIERLREAVRSRMVADVPLGAFLSGGVDSSAVVALMAGLS---------DTPVNTCSIAFDDPAFDESAYARQVAERY 311 (628)
T ss_pred HHHHHHHHHHHHHHHhcCCcceEeecCCccHHHHHHHHHHhc---------CCCCcEEEEecCCCCCChHHHHHHHHHHh
Confidence 899999999999999999999999999999999999988754 2579999999975 48999999999999
Q ss_pred CCcceEEEeChhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcccccC-------
Q 011115 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKA------- 358 (493)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~~~~~------- 358 (493)
|++|+++.+++++ .+.+++++++.+.|.. ..+..+.+.+++.+++ +++|+|||+||||+|+||++|...
T Consensus 312 g~~h~~~~~~~~~-~~~~~~~~~~~~~P~~--~~~~~~~~~~~~~a~~-~~kV~LsG~GgDElf~GY~~~~~~~~~~~~~ 387 (628)
T TIGR03108 312 GTNHRVETVDPDD-FSLVDRLAGLYDEPFA--DSSALPTYRVCELARK-RVTVALSGDGGDELFAGYRRYRWHMAEERVR 387 (628)
T ss_pred CCCCeEEecCHHH-HHHHHHHHHHhCCCCC--CchHHHHHHHHHHHHC-CCCEEEeccchhhcccCcHHHHHHHHHHHHh
Confidence 9999999999877 5677777777666542 2345677888887765 799999999999999999764310
Q ss_pred ---C----------------Ch--------h--H-----------H-h------HHHHHH-----------------H-H
Q 011115 359 ---P----------------NK--------E--E-----------F-H------RETCHK-----------------I-K 373 (493)
Q Consensus 359 ---~----------------~~--------~--~-----------~-~------~e~~~~-----------------~-~ 373 (493)
| .. . . + . .+.... + .
T Consensus 388 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 467 (628)
T TIGR03108 388 GILPLGLRRPLFGTLGRLYPKADWAPRMLRAKTTFQALARDPLEGYFHSVSVLDNALRRQLFSPDFRRELQGYRAIEVLR 467 (628)
T ss_pred hhCCHHHHHHHHHHHHhhCcccccchhhhhhhhhHhhhhcchHHHHHHHhhhcChHHHHHHHHHHhhhhcccCCHHHHHH
Confidence 0 00 0 0 0 0 000000 0 0
Q ss_pred hh----c------------------ccccccccccccccCceeccccCChHHHHHHHcCCccccccCCCCCCcchHHHHH
Q 011115 374 AL----H------------------QYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRK 431 (493)
Q Consensus 374 ~l----~------------------~~~l~r~dr~~~~~gie~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~iLR~ 431 (493)
.. . ...+.+.||++|++|+|+|+||||++|||||++||+++|++++. +|+|||+
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~lL~~~Dr~sMa~svE~R~PFLD~~lve~a~slP~~~k~~~~~----~K~iLR~ 543 (628)
T TIGR03108 468 RHAARAPTDDALSLAQYLDLKTYLPGDILTKVDRASMAHGLEVRVPLLDHRLVEWAAGLPPDLKLRGGE----GKYLLKK 543 (628)
T ss_pred HHhccccCCCHHHHHHHHHHHHhCccccccccCccchhccccccCCCCCHHHHHHHHhCCHHHhcCCCC----chHHHHH
Confidence 00 0 00134679999999999999999999999999999999998865 8999999
Q ss_pred hhccCCCCCCChhhhcccCCCCCCCCchhhHH-HHHHHHHhhcCCcccccCCcccccce
Q 011115 432 AFDDEERPYLPKHVLYRQKEQFSDGVGYSWID-GLKAHAEQHVHIPSYADFSIFISQFC 489 (493)
Q Consensus 432 a~~~~~~~~LP~~i~~R~K~~f~~~~~~~w~~-~~~~~~~~~l~~~~l~~~gl~d~~~~ 489 (493)
||++ +||++|++|+|+||+.|.. .|+. .+.+.++++|.++.+.+.|+||++.+
T Consensus 544 a~~~----~LP~~I~~R~K~gF~~p~~-~w~~~~l~~~~~~~l~~~~~~~~g~~d~~~v 597 (628)
T TIGR03108 544 AMRP----YLPDDVLYRPKMGFSVPLA-AWFRGPLRERVRTLVLGETLAETGLFDPAFI 597 (628)
T ss_pred HHHh----hCCHHHhCCCCCCCCCCHH-HHhccHHHHHHHHHhChhhhhhcCCcCHHHH
Confidence 9999 9999999999999999986 7985 68999999999999999999998765
No 7
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=100.00 E-value=1.3e-85 Score=687.19 Aligned_cols=429 Identities=45% Similarity=0.755 Sum_probs=369.1
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceE-EECCEEEEEeeeeecCCCCCCCCceeCCCcEEEEEeeEEcChH
Q 011115 4 ILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLY-QHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNHE 82 (493)
Q Consensus 4 I~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~-~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~n~~ 82 (493)
|+|+++.++......+.+..|+++|+|||||++|+| ..+++++||+||+|++...+.||+.+++++++++|||||||+.
T Consensus 1 i~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGeiyN~~ 80 (467)
T TIGR01536 1 IAGFFDLDDKAVEEDEAILRMSDTIAHRGPDASGIEYKDGNAILGHRRLAIIDLSGGAQPMSNEGKTYVIVFNGEIYNHE 80 (467)
T ss_pred CEEEEecCCcchhhHHHHHHHHHHhhCcCCCcCCcEEccCCEEEEEEEeEEeCCCCCCCeeECCCCCEEEEEeeEEcCHH
Confidence 678888776543334578899999999999999999 8899999999999999877899999988999999999999999
Q ss_pred HHHHHh--cCCCccCCCHHHHHHHHHHHHhHhHHhhccccEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeC
Q 011115 83 ALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160 (493)
Q Consensus 83 el~~~l--~~~~~~~~~D~e~i~~~~~~~g~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe 160 (493)
||+++| .|+.|++.||+|+++++|++||.+++++++|+|||++||+.+++++++||++|+|||||+.. ++.++||||
T Consensus 81 eL~~~l~~~g~~~~~~~D~e~il~~y~~~g~~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe 159 (467)
T TIGR01536 81 ELREELEAKGYTFQTDSDTEVILHLYEEWGEECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYD-GGQLYFASE 159 (467)
T ss_pred HHHHHHHhcCCccCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEE-CCEEEEEec
Confidence 999999 68899999999999999999999999999999999999999999999999999999999985 788999999
Q ss_pred cchhccc----------------------------cCCcEEeCCCcEEEecCCc---eeeeeCCCCCCCCCCCCCCcHHH
Q 011115 161 LKGLNDD----------------------------CEHFEAFPPGHLYSSKSGG---LKRWYNPTWYSEAIPSTPYDPLV 209 (493)
Q Consensus 161 ~~~l~~~----------------------------~~~i~~l~pG~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 209 (493)
+++|... +++|++|+|||++.++.++ .++||.+. .....+.++++++
T Consensus 160 ~kaL~~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~I~~l~pG~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~ 237 (467)
T TIGR01536 160 IKALLAHPRNIKPFPDGAALAPGFGFVRVPPPSTFFRGVFELEPGHDLPLEDDGLNIERYYWERR--DEHTDSEEDLVDE 237 (467)
T ss_pred HHHHHhccccCcCCCCHHHHHHHhccCccCCCCcccCCcEEcCCCeEEEEeCCCceEEEEecCCC--CCCCCCHHHHHHH
Confidence 9987542 4789999999999886432 44566532 1122234556789
Q ss_pred HHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC---CCcHHHHHHHHHHhC
Q 011115 210 LRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---SPDLKYAKEVADYLG 286 (493)
Q Consensus 210 l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~---~~d~~~A~~va~~lg 286 (493)
++++|.+||++|+.++.|||++||||+||++|++++++...+ .++.+||+++++ .+|..+|+++|+++|
T Consensus 238 l~~~l~~aV~~r~~~~~~vg~~LSGGlDSs~iaa~a~~~~~~--------~~~~~~t~~~~~~~~~~E~~~A~~vA~~lg 309 (467)
T TIGR01536 238 LRSLLEDAVKRRLVADVPVGVLLSGGLDSSLVAAIARREAPR--------GPVHTFSIGFEGSPDFDESPYARKVADHLG 309 (467)
T ss_pred HHHHHHHHHHHHhccCCceEEEecCChhHHHHHHHHHHhcCC--------CCceEEEEecCCCCCCChHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999886421 378999999863 367889999999999
Q ss_pred CcceEEEeChhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcccccCCChhHHhH
Q 011115 287 TVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHR 366 (493)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~~~~~~~~~~~~~ 366 (493)
++|+++.++++++.+.+++.+++.+.|. .....++.+.+++.+++.|++|+|||+||||+|+||++|..++....+.+
T Consensus 310 ~~~~~i~~~~~~~~~~~~~~v~~~~~p~--~~~~~~~~~~l~~~a~~~G~~vlltG~GaDElf~GY~~~~~~~~~~~~~~ 387 (467)
T TIGR01536 310 TEHHEVLFSVEEGLDALPEVIYHLEDPT--TIRASIPLYLLSKLAREDGVKVVLSGEGADELFGGYLYFHEAPAAEALRE 387 (467)
T ss_pred CcCeEEECCHHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHhcCCEEEEecCcchhcccCchhhhhccccHHHHH
Confidence 9999999999998899999998887553 33456788899999999999999999999999999998876544333322
Q ss_pred HH-HHHHHhhcccccccccccccccCceeccccCChHHHHHHHcCCccccccCCCCCCcchHHHHHhhccCCCCCCChhh
Q 011115 367 ET-CHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHV 445 (493)
Q Consensus 367 e~-~~~~~~l~~~~l~r~dr~~~~~gie~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~iLR~a~~~~~~~~LP~~i 445 (493)
+. ...++.....++++.||++|++|+|+|+||||.+||+|+++||+++|+.++. +|+|||++|++ +||++|
T Consensus 388 ~~~~~~~~~~l~~~l~~~dr~~ma~gvE~R~PflD~~lv~~a~~lp~~~k~~~~~----~K~iLR~a~~~----~lP~~i 459 (467)
T TIGR01536 388 ELQYLDLELYMPGLLRRKDRMSMAHSLEVRVPFLDHELVEYALSIPPEMKLRDGK----EKYLLREAFEG----YLPEEI 459 (467)
T ss_pred HHHHHHHHHhCcccchhHHHHHhhccccccCCcCCHHHHHHHHhCCHHHhcCCCC----cHHHHHHHHhh----hCCHHH
Confidence 22 2234555556777889999999999999999999999999999999998765 89999999999 999999
Q ss_pred hcccCCCC
Q 011115 446 LYRQKEQF 453 (493)
Q Consensus 446 ~~R~K~~f 453 (493)
++|+|.||
T Consensus 460 ~~R~K~gf 467 (467)
T TIGR01536 460 LWRKKEGF 467 (467)
T ss_pred hcCCCCCC
Confidence 99999987
No 8
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-84 Score=680.76 Aligned_cols=471 Identities=37% Similarity=0.613 Sum_probs=402.2
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEECCEEEEEeeeeecCCCCCCCCceeCCCcEEEEEeeEEcC
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~n 80 (493)
||||+|+++.++... ....+.+|.++|.|||||..|+|...++.+||+||+++|...+.||+.+.+++++++|||||||
T Consensus 1 MCGI~g~~~~~~~~~-~~~~~~~m~~~l~hRGPD~~g~~~~~~~~~gh~rL~i~d~~~g~QP~~~~~~~~~l~~NGEIYN 79 (542)
T COG0367 1 MCGIAGILNFKNLID-AKSIIEEMTKLLRHRGPDDSGVWISLNALLGHRRLSIVDLSGGRQPMIKEGGKYAIVYNGEIYN 79 (542)
T ss_pred CCceeeeeccccccc-chHHHHHHHHHhhccCCCccccEecCCceeeeeEEEEeccccCCCCcccCCCcEEEEECCEeee
Confidence 999999999763222 2567889999999999999999999999999999999998889999998778899999999999
Q ss_pred hHHHHHHh--cCCCccCCCHHHHHHHHHHHHhHhHHhhccccEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEE
Q 011115 81 HEALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWIS 158 (493)
Q Consensus 81 ~~el~~~l--~~~~~~~~~D~e~i~~~~~~~g~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~fa 158 (493)
+.||+++| .|+.|.|.||||+|+++|++||.+|+++++|+|||++||..+++|+++|||+|+|||||+.. ++.++||
T Consensus 80 ~~elr~~l~~~g~~f~t~sDtEvil~~y~~~g~~~~~~l~G~fAfai~d~~~~~l~laRD~~GikPLyy~~~-~~~l~fa 158 (542)
T COG0367 80 VEELRKELREAGYEFRTYSDTEVILTLYEEWGEDCVEHLNGMFAFAIYDETRQKLFLARDPFGVKPLYYTSK-NENLAFA 158 (542)
T ss_pred HHHHHHHHHhcCceeccccchHHHHHHHHHHHHHHHHHhccceEEEEEECCCCEEEEEecCCCccccEEEec-CCceEEE
Confidence 99999999 49999999999999999999999999999999999999999999999999999999999985 6779999
Q ss_pred eCcchhccc-----cCCcEEeCCCcEEEecCCc-eeeeeCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhccCcceEEEe
Q 011115 159 SELKGLNDD-----CEHFEAFPPGHLYSSKSGG-LKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLL 232 (493)
Q Consensus 159 Se~~~l~~~-----~~~i~~l~pG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~v~L 232 (493)
||+|+|..+ +++|++|||||++.++.++ +.+||.+.+.... .+.++..++++++|.+||++|+++++|+|++|
T Consensus 159 SE~Kal~~~~~~~~~~~i~~l~pg~~l~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~l~~~l~~sV~~r~~advpvg~~l 237 (542)
T COG0367 159 SEIKALLAHPVVRFLRDIKELPPGHLLEFTDGGLIRRYWRLSEKTSK-ESADELAEHLRSLLEDAVKRRLVADVPVGVFL 237 (542)
T ss_pred echhhhhhCCcccccCCeEEcCCCcEEEEcCCCceeeeecccccccc-cchHHHHHHHHHHHHHHHHHHhccCCcEEEEe
Confidence 999999999 9999999999999998766 8999998765443 34556688999999999999999999999999
Q ss_pred cCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCC--cHHHHHHHHHHhCCcceEEEeChhhhHHHHHHHHHhh
Q 011115 233 SGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP--DLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHV 310 (493)
Q Consensus 233 SGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~--d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~ 310 (493)
|||+|||+||++|++.... ...++||+++++++ |.++|+++|+.+|++|+.+.++++++.+.+++++++.
T Consensus 238 SGGlDSS~Iaa~a~~~~~~--------~~~~~fsvg~~~~~~~D~~~a~~~A~~lg~~h~~~~~~~~e~~~~~~~vv~~~ 309 (542)
T COG0367 238 SGGLDSSLIAAIAAEELGK--------EGKTTFTVGFEDSDSPDAKYARAVAKFLGTPHHEIILTNEELLNALPEVVKAL 309 (542)
T ss_pred CCCccHHHHHHHHHHhccc--------cceeeeEeecCCCCCchHHHHHHHHHHhCCCcEEEeecHHHHHHHHHHHHhhc
Confidence 9999999999999998642 12225999998774 9999999999999999999999999999999999999
Q ss_pred cccccccccchHHHHHHHHHHHhCCCeEEEeccCccccccCC-cccccCCChhH-HhHHHHHHHHhhccccccccccccc
Q 011115 311 ETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGY-LYFHKAPNKEE-FHRETCHKIKALHQYDCLRANKSTS 388 (493)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy-~~~~~~~~~~~-~~~e~~~~~~~l~~~~l~r~dr~~~ 388 (493)
+.|.. +...+++|++++.+++.|.+|+|||+||||+|||| ++....+.... +.+++.+++......++.|.+++.+
T Consensus 310 ~~p~~--~~~~~ply~~~~~a~~~g~kVvLSGeGADElFgGY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~ 387 (542)
T COG0367 310 DTPGG--MAASIPLYLLSRKARAEGEKVVLSGEGADELFGGYPPYSRFAPGPEELLNEALRRALALIDYNRLARDDRVAA 387 (542)
T ss_pred CCCCc--ccchhHHHHHHHhhhhcCcEEeecCccHHHHhcCCchhhhhccchHHHHHHHHHhhhhhhhhhhhhhhhhhhh
Confidence 98874 56778999999999999999999999999999999 45444444433 3333444443333333466777777
Q ss_pred ccCceeccccCChHHHHHHHcCCccccccCC----C------------------------CCCcchHHHHHhhccCCCCC
Q 011115 389 AWGLEARVPFLDKDFINVAMAIDPEWKMINP----Q------------------------EGRIEKWILRKAFDDEERPY 440 (493)
Q Consensus 389 ~~gie~r~PflD~~lve~~~~lP~~~k~~~~----~------------------------~~~~~K~iLR~a~~~~~~~~ 440 (493)
++++|.|.||+|.+++++++++|++.++..+ . .....|.++|.+.+. .
T Consensus 388 ~~~~E~r~p~ld~~~~~l~l~~~~~~~i~~~~~m~~~le~Rvpf~~~~~l~~~i~~~~K~~~~~gk~~lr~~~~~----~ 463 (542)
T COG0367 388 AFGVEARVPFLDRELVDLALKIPPEHKLNRDRSMAKKLERRVPFSDGVELPEEIPWREKIAFGYGKGILRIAYEK----I 463 (542)
T ss_pred hcccccccCchHHHHHHHHhcCCcccccchhhhhhhhhheecccccchhhHhhCChhhhhhcCCcchhhHhhhhc----c
Confidence 7777777777777777777777777666552 0 013579999999999 9
Q ss_pred CChhhhcccCCCCCCCCchhhH--HHHHHHHHhhcCCcccccCCcccccce
Q 011115 441 LPKHVLYRQKEQFSDGVGYSWI--DGLKAHAEQHVHIPSYADFSIFISQFC 489 (493)
Q Consensus 441 LP~~i~~R~K~~f~~~~~~~w~--~~~~~~~~~~l~~~~l~~~gl~d~~~~ 489 (493)
+|+.+..|+|.+|+.|.. .|. ....+++.+++.++.....+++|+..+
T Consensus 464 ~p~~~~~r~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 513 (542)
T COG0367 464 LPDFILSRKKLGFPKPLW-GRYYENSLLLWLYRLIEEEFSPEYPLVDLALV 513 (542)
T ss_pred CcHHHhcccccCCCcccc-cccccchHHHHHHHHHhhhcccccchhhhHHH
Confidence 999999999999999965 455 247889999999998888899988765
No 9
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.2e-46 Score=357.65 Aligned_cols=430 Identities=22% Similarity=0.288 Sum_probs=298.4
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEECC----EEEEEeeeeecCCCCCCCCceeCCCcEEEEEee
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGD----FYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNG 76 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~----~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG 76 (493)
||||+-.+..+.+-. ....-..|...+..||||.++....+. +.++-.-|+..| ....||++.. .++++.|||
T Consensus 1 MCGI~~s~~~~~~l~-~~~i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f~~~vL~lrG-~~t~Qpvv~d-~~~vfl~NG 77 (520)
T KOG0573|consen 1 MCGIFLSVDKDLALN-SELISEALGLLIGNRGPDHSSKVCTDGKPYIVLFESSVLSLRG-YLTKQPVVED-DRYVFLFNG 77 (520)
T ss_pred CceEEEeecCCcccc-ccchhhHHHHHhhccCCCchhhhhhcccceeEEeecceEEEee-eeccCceecc-cceEEEecc
Confidence 999999988765422 223445677788999999876554332 233333344444 2356998754 458999999
Q ss_pred EEcChHHHHHHhcCCCccCCCHHHHHHHHHHHHh-----HhHHhhccccEEEEEEECCCCEEEEEecCCCCceEEEEEec
Q 011115 77 EIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYG-----ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL 151 (493)
Q Consensus 77 ~i~n~~el~~~l~~~~~~~~~D~e~i~~~~~~~g-----~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~ 151 (493)
||||... ..+..|+..|++.+...+ .+.++.+.|+|+|++||...++||+.||++|+|+|.|....
T Consensus 78 eIyn~~~---------s~~~~d~~~l~~~l~~~~e~~~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~~GRrSLly~~~~ 148 (520)
T KOG0573|consen 78 EIYNGEK---------SDTLFDTDILAEELSNLKESGDILDIIKSLQGPWAFIYYDVRSDKLYFGRDDIGRRSLLYSLDP 148 (520)
T ss_pred eeccCCC---------ccccchHHHHHHHHhcCCccccHHHHHHhccCCceEEEEEccCcEEEEecccccceeeeEEecc
Confidence 9999653 245569999988887654 56788899999999999999999999999999999999864
Q ss_pred CcEEEEEeCcchhccccCCcEEeCCCcEEEecCCceeeeeCCCCCC---CCCCCCC-------------CcHHHHHHHHH
Q 011115 152 DGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYS---EAIPSTP-------------YDPLVLRQAFE 215 (493)
Q Consensus 152 ~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------------~~~~~l~~~l~ 215 (493)
.+..++.|.... ..+.|+++||+-.......-...|.+..... .+.++.. +.+..+-+.+.
T Consensus 149 ~~f~~~~st~g~---~~~~i~e~~~~F~~~~~d~~~w~y~s~~le~~~~~s~~p~~~i~~~~l~~~~~~~~v~~l~~~l~ 225 (520)
T KOG0573|consen 149 FNFSLVLSTVGT---SGKLIYEVPPVFRNKLTDRVPWPYLSTKLENSLGPSLPPLCDISEIFLNQSHRSEVVSGLHTGLR 225 (520)
T ss_pred CceeEEeecccc---CCccccccCchhhhccCCccccccccceecccCCCcCCCccchHHHHhhhHHHHHHHhhhHHHHH
Confidence 443333332211 1234678999833222211111111100000 0011111 12345556677
Q ss_pred HHHHHhhcc---------------CcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC---C-----C
Q 011115 216 NAVIKRLMT---------------DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE---G-----S 272 (493)
Q Consensus 216 ~aV~~rl~~---------------~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~---~-----~ 272 (493)
++++.|... ..+|+|++|||+||++||.++.+..+.+ .+|..+++.|. + .
T Consensus 226 ds~k~rvl~i~~rl~~~i~~~c~~~s~VcVlfSGGvDs~vvA~l~h~~vp~n-------e~IdLINVaF~n~e~~~~~~~ 298 (520)
T KOG0573|consen 226 DSLKDRVLVIPPRLCANILLRCIHESNVCVLFSGGVDSTVVAVLAHYVVPEN-------EPIDLINVAFGNPEGSKEQNV 298 (520)
T ss_pred HHHhhhhhccChhHhhhccccccccCcEEEEecCCchHHHHHHHHHhhcCCC-------CceeEEEeeccCCCcccccCC
Confidence 777765421 3689999999999999999999988664 57777777773 2 2
Q ss_pred CcHHHHHHHHHHhCC-------cceEEEeChhhhHHHHHHHHHhhccccccc--ccchHHHHHHHHH---------HHhC
Q 011115 273 PDLKYAKEVADYLGT-------VHHEFHFTVQDGIDAIEEVIYHVETYDVTT--IRASTPMFLMSRK---------IKSL 334 (493)
Q Consensus 273 ~d~~~A~~va~~lg~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~---------a~~~ 334 (493)
+|++.+++-++++.. .+.+++++.+++..+.+. +.++-.|..+. .+.+.++|++++. ..+.
T Consensus 299 PDRktgr~g~~eL~s~~P~R~~nlV~vnV~~~El~~~k~~-I~~LiyP~dtvmD~SIgcafwFAsrg~G~~~~~~~sy~s 377 (520)
T KOG0573|consen 299 PDRKTGRRGLEELQSLYPKRSWNLVEVNVTYEELQKAKEH-IKHLIYPKDTVMDLSIGCAFWFASRGRGVDSENQQSYRS 377 (520)
T ss_pred ccHHHHHHHHHHHHHhCCcceEEEEeccCCHHHHHHHHHH-HHHhhCcCccccccccceEEEEeeccccccccCcccccc
Confidence 799988888877763 234455666665544333 44443332222 2334556666651 1234
Q ss_pred CCeEEEeccCccccccCCcccccC---CChhHHhHHHHHHHHhhcccccccccccccccCceeccccCChHHHHHHHcCC
Q 011115 335 GVKMVISGEGSDEIFGGYLYFHKA---PNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAID 411 (493)
Q Consensus 335 g~~v~ltG~GgDelfgGy~~~~~~---~~~~~~~~e~~~~~~~l~~~~l~r~dr~~~~~gie~r~PflD~~lve~~~~lP 411 (493)
.++|+++|.||||+||||.+|+.. +..+.+.+|+.+++.++..+||-|+||+...+|+|+|+||||..||+|..++|
T Consensus 378 ~a~V~l~GsGADEllgGY~rhr~rf~~~~~e~l~eEl~~dl~rIs~RNLgRDDRViad~Gke~R~PFLde~vV~~~~~l~ 457 (520)
T KOG0573|consen 378 YARVALLGSGADELLGGYHRHRTRFEKEDLEGLREELERDLFRISHRNLGRDDRVIADSGKEVRSPFLDENVVKLSNALP 457 (520)
T ss_pred ccEEEEecCChHHhhccHHHHHhhhccCCcHHHHHHHHHHHhhhhhcccCccchhhhccCceEeccchHHHHHHHHHhcc
Confidence 579999999999999999988732 33346889999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCcchHHHHHhhccCCCCCCChhhhcccCCCCCCCCc
Q 011115 412 PEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVG 458 (493)
Q Consensus 412 ~~~k~~~~~~~~~~K~iLR~a~~~~~~~~LP~~i~~R~K~~f~~~~~ 458 (493)
...|...+..| .+|.+||++.+.+| ||. +..-||++++.|+.
T Consensus 458 ~~~k~~l~l~G-G~KlllRe~~~~lG---l~~-~s~~pKrAmQFGSr 499 (520)
T KOG0573|consen 458 VSVKMMLGLRG-GEKLLLREAGRRLG---LPS-ASTEPKRAMQFGSR 499 (520)
T ss_pred hhHHhhhcccc-hhhHHHHHHHHHhC---CCc-ccccchHHHHhhhh
Confidence 99999877644 69999999999843 554 44467888887764
No 10
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=100.00 E-value=2.2e-41 Score=329.78 Aligned_cols=227 Identities=42% Similarity=0.725 Sum_probs=184.6
Q ss_pred HHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC--CCCcHHHHHHHHHHhCCc
Q 011115 211 RQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGTV 288 (493)
Q Consensus 211 ~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~va~~lg~~ 288 (493)
+++|.+||++|+++++|||++||||+||++|++++++... .++.+||+.+. +.+|..+|+++|+++|++
T Consensus 1 r~~l~~av~~~~~~~~~v~~~LSGGlDSs~va~~~~~~~~---------~~~~~~~~~~~~~~~~e~~~a~~~a~~l~~~ 71 (269)
T cd01991 1 RELLEDAVRRRLRSDVPVGVLLSGGLDSSLVAALAARLLP---------EPVKTFSIGFGFEGSDEREYARRVAEHLGTE 71 (269)
T ss_pred ChHHHHHHHHHhccCCceEEeecccHHHHHHHHHHHHhhC---------CCCceEEEeeCCCCCChHHHHHHHHHHhCCc
Confidence 4689999999999999999999999999999999988752 34788888765 456799999999999999
Q ss_pred ceEEEeChhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcccccCCCh-------
Q 011115 289 HHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNK------- 361 (493)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~~~~~~~~------- 361 (493)
|+.+.++..++.+.++..++..+.|. ...+..+.+.+++.+++.|++|+|||+||||+|+||+++......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~l~~~a~~~~~~v~l~G~g~Delf~Gy~~~~~~~~~~~~~~~~ 149 (269)
T cd01991 72 HHEVEFTPADLLAALPDVIWELDEPF--ADSSAIPLYLLSRLARKHGIKVVLSGEGADELFGGYPRYRRAPLARRRRRRL 149 (269)
T ss_pred ceEEEcCHHHHHHHHHHHHHHhCCCC--CCcHHHHHHHHHHHHHHhCCEEEEecCCccccccChHHHHHHHHHhhccccC
Confidence 99999998888888888777666553 234456788899999999999999999999999999876432110
Q ss_pred -------------hHHhHHHHHHHHhhcc--------------------cccccccccccccCceeccccCChHHHHHHH
Q 011115 362 -------------EEFHRETCHKIKALHQ--------------------YDCLRANKSTSAWGLEARVPFLDKDFINVAM 408 (493)
Q Consensus 362 -------------~~~~~e~~~~~~~l~~--------------------~~l~r~dr~~~~~gie~r~PflD~~lve~~~ 408 (493)
..+...+...++.+.. ..+.+.|+++|++|+|+|+||||.+|||||+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dr~~m~~gvE~R~PflD~~lve~~~ 229 (269)
T cd01991 150 LGLAALARALAGAEGLREELARDLARLHLLNGAADAAARARDLLTYLLGDLLLRDDRASMAHGLEVRVPFLDHRLVEFAL 229 (269)
T ss_pred cchhhHHHHhhhhhhhHHHHHHHHHhCcccccCCHHHHHHHHHHHhcccchHHHhhHHHHHhcccccCCCCCHHHHHHHH
Confidence 0011111121222211 1246789999999999999999999999999
Q ss_pred cCCccccccCCCCCCcchHHHHHhhccCCCCCCChhhhcccCCCCCCC
Q 011115 409 AIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDG 456 (493)
Q Consensus 409 ~lP~~~k~~~~~~~~~~K~iLR~a~~~~~~~~LP~~i~~R~K~~f~~~ 456 (493)
+||+++|+.++. +|+|||+++++ +||++|++|+|+||+.|
T Consensus 230 ~lP~~~k~~~~~----~K~iLR~a~~~----~lP~~i~~r~K~g~~~p 269 (269)
T cd01991 230 SLPPELKIRGGR----EKYLLREAAAG----LLPDEILWRPKRGFQVP 269 (269)
T ss_pred cCCHHHhcCCCC----chHHHHHHHHh----hCCHHHHcCCCCCCCCC
Confidence 999999998765 89999999999 99999999999999865
No 11
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=100.00 E-value=6.4e-40 Score=309.01 Aligned_cols=189 Identities=42% Similarity=0.781 Sum_probs=170.4
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEECCEEEEEeeeeecCCCCCCCCceeCCCcEEEEEeeEEcCh
Q 011115 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNH 81 (493)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~n~ 81 (493)
|||+|+++.+.... ....+..|+.+|+|||||+.|++..+++++||+|+++.+...+.||+..+++++++++||+|||+
T Consensus 1 cGI~g~~~~~~~~~-~~~~~~~~~~~l~hRGpd~~~~~~~~~~~lgh~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~N~ 79 (220)
T cd00712 1 CGIAGIIGLDGASV-DRATLERMLDALAHRGPDGSGIWIDEGVALGHRRLSIIDLSGGAQPMVSEDGRLVLVFNGEIYNY 79 (220)
T ss_pred CeEEEEEeCCCCcc-hHHHHHHHHHHHhccCCCCCCEEEECCEEEEEEeeeecCcccCCCCeEeCCCCEEEEEEEEEeCH
Confidence 99999997654222 35678899999999999999999999999999999999876789999988889999999999999
Q ss_pred HHHHHHh--cCCCccCCCHHHHHHHHHHHHhHhHHhhccccEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEe
Q 011115 82 EALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISS 159 (493)
Q Consensus 82 ~el~~~l--~~~~~~~~~D~e~i~~~~~~~g~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faS 159 (493)
.+|+++| .++.+.+.||+|+|+++|++||.+++++++|+||+++||+.+++++++||++|.+||||+.. ++.++|||
T Consensus 80 ~~L~~~l~~~~~~~~~~sD~e~l~~~~~~~g~~~~~~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy~~~~-~~~~~~aS 158 (220)
T cd00712 80 RELRAELEALGHRFRTHSDTEVILHLYEEWGEDCLERLNGMFAFALWDKRKRRLFLARDRFGIKPLYYGRD-GGGLAFAS 158 (220)
T ss_pred HHHHHHHHhcCCcCCCCChHHHHHHHHHHHhHHHHHHhhheEEEEEEECCCCEEEEEECCCCCEeeEEEEE-CCEEEEEc
Confidence 9999999 57778999999999999999999999999999999999999999999999999999999985 67899999
Q ss_pred Ccchhccc---------------------------cCCcEEeCCCcEEEecCCc--eeeeeC
Q 011115 160 ELKGLNDD---------------------------CEHFEAFPPGHLYSSKSGG--LKRWYN 192 (493)
Q Consensus 160 e~~~l~~~---------------------------~~~i~~l~pG~~~~~~~~~--~~~~~~ 192 (493)
|+++|... +++|++|||||++.++.+. .++||+
T Consensus 159 e~~~l~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~V~~l~pG~~l~~~~~~~~~~~yw~ 220 (220)
T cd00712 159 ELKALLALPGVPRELDEAALAEYLAFQYVPAPRTIFKGIRKLPPGHYLTVDPGGVEIRRYWD 220 (220)
T ss_pred chHHHHhcCCCCCCcCHHHHHHHHhcCCCCCCCchhcCceEECCceEEEEECCCeEEeeeCC
Confidence 99998652 4689999999999987643 678884
No 12
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=100.00 E-value=1.3e-39 Score=314.42 Aligned_cols=225 Identities=35% Similarity=0.646 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCC--cHHHHHHHHHHhC
Q 011115 209 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP--DLKYAKEVADYLG 286 (493)
Q Consensus 209 ~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~--d~~~A~~va~~lg 286 (493)
+|+++|.+||++|++++.+|++.||||+||++|++++++.. +.++.+||+++++.. |..+|+++|+++|
T Consensus 1 ~~r~~l~~av~~rl~~~~~i~~~LSGGlDSs~i~~~~~~~~---------~~~~~~~t~~~~~~~~~e~~~a~~va~~~~ 71 (255)
T PF00733_consen 1 ELRELLEEAVARRLRSDKPIGILLSGGLDSSAIAALAARQG---------GPPIKTFTIGFEDDDYDEREYARKVARHLG 71 (255)
T ss_dssp HHHHHHHHHHHHHCGCTSEEEEE--SSHHHHHHHHHHHHTC---------CSEEEEEEEECSSCC--HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCChhHHHHHHHHHHhh---------CCceeEEEEEcCCCcchhHHHHHHHhcccc
Confidence 68999999999999999999999999999999999999832 378999999998877 9999999999999
Q ss_pred CcceEEEeChhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcccccCC----Chh
Q 011115 287 TVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAP----NKE 362 (493)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~~~~~~----~~~ 362 (493)
++|+.+.++.+++.+.+++.++..+.|.........+.+.+++.+++.|++++|||+||||+|+||+.+.... ...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~ltG~GgDelf~G~~~~~~~~~~~~~~~ 151 (255)
T PF00733_consen 72 LEHHEIELDPEDLLDNLEDIIWRLDGPSPLDDPNSLPLYLLARLARENGIRVLLTGQGGDELFGGYPRYRPAYLRPLLLG 151 (255)
T ss_dssp -EEEEEEE-HHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHCHTTBSEEE--TTHHHHHTTTT-TTGGGCGHCCHH
T ss_pred cccceeeechhhHHHhHHHHHHHHhCCcccccccccHHHHHHHhhcccceeEEEeccccccccccchHhHHHHhhhhhhh
Confidence 9999999999999888888888887765321334556677888888899999999999999999997654321 111
Q ss_pred HHhHHHHHHHH------------------------hhcccccccccccccccCceeccccCChHHHHHHHcCCccccccC
Q 011115 363 EFHRETCHKIK------------------------ALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMIN 418 (493)
Q Consensus 363 ~~~~e~~~~~~------------------------~l~~~~l~r~dr~~~~~gie~r~PflD~~lve~~~~lP~~~k~~~ 418 (493)
.....+...+. .+....+.+.+++++.+|+|+|+||||.+||+||++||.++++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~PflD~~lv~~~~~lP~~~~~~~ 231 (255)
T PF00733_consen 152 RLSRELRRFIRNLLRADLERFQQPYDRSEYFDFWKRLLARLLPRSDRASMAYGIEVRSPFLDRRLVEFCLSLPPEQRFDG 231 (255)
T ss_dssp HHHHHHHHHHHHCCCTHH----------------HHHHHHHSCCHCHHHHCTT-EEE-GGGSHHHHHHHHCB-GGGCCET
T ss_pred hhhhhhhHHHHHHhhhccccccccccccccccccccccchhhhhhhhhhhhcccccCceecCHHHHHHHHhCCHHHHcCC
Confidence 22222222221 122223456778999999999999999999999999999999988
Q ss_pred CCCCCcchHHHHHhhccCCCCCCChhhhcccC
Q 011115 419 PQEGRIEKWILRKAFDDEERPYLPKHVLYRQK 450 (493)
Q Consensus 419 ~~~~~~~K~iLR~a~~~~~~~~LP~~i~~R~K 450 (493)
+. +|++||++|++ +||++|++|+|
T Consensus 232 ~~----~K~llR~a~~~----~lP~~i~~r~K 255 (255)
T PF00733_consen 232 GI----YKYLLREAMKD----LLPPEILWRKK 255 (255)
T ss_dssp TE----CTHHHHHHHTC----CS-HHHHTS-S
T ss_pred CC----CcHHHHHHHHh----hCCHHHhcCCC
Confidence 75 79999999999 99999999998
No 13
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.8e-35 Score=303.27 Aligned_cols=218 Identities=21% Similarity=0.377 Sum_probs=173.9
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEEC---------------------------CEEEEEeeeee
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAI 53 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~ 53 (493)
||||+|+++..+ ....+..|+.+|+|||||++|++..+ ++++||+||+|
T Consensus 1 MCGI~G~~~~~~----~~~~~~~~L~~LqhRG~DsaGia~~~~~~~~~~k~~G~v~~~f~~~~~~~~~g~~~iGH~R~at 76 (445)
T PRK08525 1 MCAVVGVINSKN----AAKLAYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNEDNLKTLKGEIAIGHNRYST 76 (445)
T ss_pred CceEEEEEcCcc----HHHHHHHHHHHhhCcCcccceEEEEeCCEEEEEEcCcchhhccchhhhhccCCcEEEeeccccc
Confidence 999999998542 24556789999999999999998732 47999999999
Q ss_pred cCCC--CCCCCcee--CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHHHh--------HhHHhhccc
Q 011115 54 IDPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (493)
Q Consensus 54 ~~~~--~~~qP~~~--~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~~g--------~~~~~~l~G 119 (493)
.|.. .+.||+.+ .+++++++|||+|||+.+|+++| .|+.|.+.||+|+|+++|.+++ .+++++|+|
T Consensus 77 ~g~~~~~naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l~~~~~~~~~~ea~~~~~~~L~G 156 (445)
T PRK08525 77 AGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHLIARSKKESLKDRIIEALKKIIG 156 (445)
T ss_pred CCCCCCCCCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcCC
Confidence 9953 58999987 56889999999999999999999 6899999999999999998875 578999999
Q ss_pred cEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeCcchhccc-cCCcEEeCCCcEEEec--CCcee--eeeCCC
Q 011115 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSK--SGGLK--RWYNPT 194 (493)
Q Consensus 120 ~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~--~~~~~--~~~~~~ 194 (493)
+|||+++++ ++++++||++|+|||||+...++.++||||.++|... .+.+++++||+++.++ +++++ +++...
T Consensus 157 ~fa~vi~~~--~~l~~~RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g~~~~~~~~pGe~v~i~~~~~~~~~~~~~~~~ 234 (445)
T PRK08525 157 AYCLVLLSR--SKMFAIRDPHGVRPLSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEMLIFEQGNDEFESIQLFEPT 234 (445)
T ss_pred ceEEEEEeC--CEEEEEECCCCCCCeEEEEecCCEEEEEECHHHhhccCCcEEEEeCCCeEEEEEcCCCceEEEEecCCC
Confidence 999999996 7999999999999999987435689999999999654 4568889999998886 33332 233321
Q ss_pred -------CCCCCCCCC---CCcHHHHHHHHHHHHHHhhcc
Q 011115 195 -------WYSEAIPST---PYDPLVLRQAFENAVIKRLMT 224 (493)
Q Consensus 195 -------~~~~~~~~~---~~~~~~l~~~l~~aV~~rl~~ 224 (493)
|.....|+. ...+-+++..+-+.+.+.+..
T Consensus 235 ~~~c~fe~iY~~rpds~~~g~~v~~~R~~~G~~La~~~~~ 274 (445)
T PRK08525 235 PRICAFEYIYFARPDSIVFGKNVYEVRKKMGEELAKKFPI 274 (445)
T ss_pred CccceeEeeeecCCCceECCEEHHHHHHHHHHHHHHHhcc
Confidence 111122322 234567777777777766653
No 14
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=100.00 E-value=2.3e-36 Score=274.08 Aligned_cols=168 Identities=26% Similarity=0.387 Sum_probs=142.3
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEE----CCEEEEEeeeeecCCCCCCCCceeCCCcEEEEEee
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH----GDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNG 76 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~----~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG 76 (493)
||||+|+++...........+..|+++|+|||||++|++.. ..+.++|+||++++...+.||+...+++++++|||
T Consensus 1 MCGI~~~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~~rL~i~~~~~~~QP~~~~~~~~~lv~NG 80 (181)
T cd03766 1 MCGILCSVSPSGPHINSSLLSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGDHVTRQPLVDQSTGNVLQWNG 80 (181)
T ss_pred CCcEEEEEeCCCCcccchhhHHHHHHHHHhcCCCccCCEEeeccccEEEEEeeEEEecCCCCCCCCCEeCCCCEEEEECC
Confidence 99999999764432111345788999999999999999986 35899999999999767899999887889999999
Q ss_pred EEcChHHHHHHhcCCCccCCCHHHHHHHHHHHHh------HhHHhhccccEEEEEEECCCCEEEEEecCCCCceEEEEEe
Q 011115 77 EIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYG------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWG 150 (493)
Q Consensus 77 ~i~n~~el~~~l~~~~~~~~~D~e~i~~~~~~~g------~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~ 150 (493)
+|||+.+|++ +.||||+|+++|+++| .+++++|+|+|||++||+.+++++++||++|+|||||+..
T Consensus 81 eIyN~~~l~~--------s~sDtEvi~~l~~~~g~~~~~i~~~~~~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~y~~~ 152 (181)
T cd03766 81 ELYNIDGVED--------EENDTEVIFELLANCSSESQDILDVLSSIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLD 152 (181)
T ss_pred EEECcccccC--------CCCHHHHHHHHHHHHhhhHHHHHHHHHhcccceEEEEEeCCCCEEEEEECCCCCcCcEEEee
Confidence 9999999863 7899999999999998 4899999999999999999999999999999999999985
Q ss_pred c-CcEEEEEeCcchhccccCCcEEeCCCc
Q 011115 151 L-DGSIWISSELKGLNDDCEHFEAFPPGH 178 (493)
Q Consensus 151 ~-~~~~~faSe~~~l~~~~~~i~~l~pG~ 178 (493)
. ++.++|||+..... .....+++|+.
T Consensus 153 ~~~~~l~~aS~~~~~~--~~~~~e~~~~g 179 (181)
T cd03766 153 PNGFELSISSVSGSSS--GSGFQEVLAGG 179 (181)
T ss_pred CCCCcEEEEEccCCCC--CCceEECCCCc
Confidence 3 67899999865332 12466777753
No 15
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.9e-34 Score=295.12 Aligned_cols=233 Identities=24% Similarity=0.365 Sum_probs=179.3
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEE---------------------------CCEEEEEeeeee
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAI 53 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~ 53 (493)
||||+|+++..+ ....+..++.+|+|||||++|++.. +++++||+|++|
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~l~~l~G~~gIGH~RysT 86 (475)
T PRK07631 11 ECGVFGIWGHEE----AAQITYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQNGELDALKGKAAIGHVRYAT 86 (475)
T ss_pred CCcEEEEECCch----hHHHHHHHHHHhcCCCcccCeEEEEcCCEEEEEEcccccchhhchhhhhccCCCEEEEEeeccc
Confidence 999999998532 2455778899999999999998852 357899999999
Q ss_pred cCCC--CCCCCce--eCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHHHh--------HhHHhhccc
Q 011115 54 IDPA--SGDQPLY--NEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (493)
Q Consensus 54 ~~~~--~~~qP~~--~~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~~g--------~~~~~~l~G 119 (493)
.|.. .+.||+. +.+++++++|||+|||+.+|+++| .|+.|.+.||+|+|++++.+++ .+++++++|
T Consensus 87 ~G~~~~~n~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~Li~~~~~~~~~eai~~~~~~l~G 166 (475)
T PRK07631 87 AGGGGYENVQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHLIKRSGAPTLKEQIKNALSMLKG 166 (475)
T ss_pred cCCCCcCCcCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 9964 5899996 456889999999999999999999 6899999999999999999987 468999999
Q ss_pred cEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeCcchhccc-cCCcEEeCCCcEEEecCCceeeeeC-CCCC-
Q 011115 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKRWYN-PTWY- 196 (493)
Q Consensus 120 ~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~~~~~-~~~~- 196 (493)
+||+++++. ++++++|||+|+|||||+.. ++.++||||.++|... .+.++.|+||+++.++.++++.+-. +...
T Consensus 167 ~yalvi~~~--~~l~aaRDp~GirPL~~G~~-~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g~~~~~~~~~~~~ 243 (475)
T PRK07631 167 AYAFLLMTE--TELYVALDPNGLRPLSIGRL-GDAYVVASETCAFDVIGATYEREVEPGELLIINDEGMRSERFAPNQNR 243 (475)
T ss_pred CceeeEEeC--CEEEEEECCCCCCCEEEEEe-CCEEEEEeChHHHhhcCcceEEEcCCCeEEEEECCcEEEEecCCCCCc
Confidence 999999997 78999999999999999985 6789999999999765 3568899999999887655443221 1110
Q ss_pred --------CCCCCCC---CCcHHHHHHHHHHHHHHhhccCcceEEEecCCcchhHHHH
Q 011115 197 --------SEAIPST---PYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVAS 243 (493)
Q Consensus 197 --------~~~~~~~---~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa 243 (493)
....|+. ...+.+.|..+-+.+.+....+.. .+.+=-||+..+|
T Consensus 244 ~~C~fE~iYfarpdS~~~g~~vy~~R~~~G~~La~~~~~~~D---~VvpVP~s~~~~A 298 (475)
T PRK07631 244 SICSMEYIYFARPDSNVDGINVHTARKNLGKRLALEAPVEAD---VVTGVPDSSISAA 298 (475)
T ss_pred ccceEEEEEeecCCcccCCeEHHHHHHHHHHHHHhhCCCCCc---EEEEechhHHHHH
Confidence 1122221 234667777777777665432221 2333345555443
No 16
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=9.8e-35 Score=297.57 Aligned_cols=227 Identities=22% Similarity=0.319 Sum_probs=178.8
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEEC--------------------------CEEEEEeeeeec
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG--------------------------DFYLAHQRLAII 54 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~--------------------------~~~l~h~rl~~~ 54 (493)
||||+|+++..+ ....+..++.+|+|||+|++|+++.. ++++||+|++|.
T Consensus 19 mCGI~G~~~~~~----~~~~~~~gL~~LqhRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~~l~G~~gIGH~RyaT~ 94 (474)
T PRK06388 19 DCAVVGFKGGIN----AYSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPATDPIKGIVGVGHTRYSTA 94 (474)
T ss_pred CCeEEEEECCcc----hHHHHHHHHHHhhCcCcCcceEEEEcCCEEEEEecCcchHHHhhhhhhcCCCcEEEeeeeeeec
Confidence 999999997542 24567899999999999999998732 369999999999
Q ss_pred CCC--CCCCCcee--CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHH----HHh-----HhHHhhccc
Q 011115 55 DPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYE----EYG-----ENFVDMLDG 119 (493)
Q Consensus 55 ~~~--~~~qP~~~--~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~----~~g-----~~~~~~l~G 119 (493)
|.. .+.||+.. ..++++++|||+|+|+.+|+++| .|+.|.+.||+|++++++. ++| .+++++++|
T Consensus 95 G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~li~~~~~~~~~~eai~~~~~~l~G 174 (474)
T PRK06388 95 GSKGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISKYGLKEGFERSMERLRG 174 (474)
T ss_pred CCCCccCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhccC
Confidence 954 58999973 46789999999999999999999 6899999999999999995 345 568999999
Q ss_pred cEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeCcchhcccc-CCcEEeCCCcEEEecCCceeeeeC-CC---
Q 011115 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC-EHFEAFPPGHLYSSKSGGLKRWYN-PT--- 194 (493)
Q Consensus 120 ~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~-~~i~~l~pG~~~~~~~~~~~~~~~-~~--- 194 (493)
+||+++++. ++++++||++|+|||||+.. ++.++||||.++|.... +.|+.|+||+++.++.++++.+.. +.
T Consensus 175 ~ya~vi~~~--~~l~a~RDp~GiRPL~~G~~-~~~~~~ASE~~Al~~~~~~~i~~l~PGeiv~i~~~g~~~~~~~~~~~~ 251 (474)
T PRK06388 175 AYACALMIN--DRLYAIRDPNGIRPLVLGKN-FDGYIIASESCAIDALSGTTIKNVEPGEVVEVFDNGYKTIFKLDGDKV 251 (474)
T ss_pred ceeEEEEEC--CEEEEEECCCCCCceEEEec-CCEEEEEEChHHHHhccCcEEEEeCCCEEEEEECCceEEEEecCCCcc
Confidence 999999976 89999999999999999985 66799999999999864 479999999998887665433332 11
Q ss_pred ------CCCCCCCCC---CCcHHHHHHHHHHHHHHhhc--cCcceEEEecC
Q 011115 195 ------WYSEAIPST---PYDPLVLRQAFENAVIKRLM--TDVPFGVLLSG 234 (493)
Q Consensus 195 ------~~~~~~~~~---~~~~~~l~~~l~~aV~~rl~--~~~~v~v~LSG 234 (493)
|.....|+. ...+.+.|..+-+...+... .|.-+.|.+||
T Consensus 252 ~~C~fE~iYfarpds~~~g~~vy~~R~~~G~~La~~~~~~~D~VvpVP~s~ 302 (474)
T PRK06388 252 AHCMFEYVYFSRPDSIIDGINVYQARVRMGMRLAKESPVEADVVVPVPDSG 302 (474)
T ss_pred ccceEEEEeecCCccccCCcHHHHHHHHHHHHHHhhccCCCcEEEeeCCCc
Confidence 001122322 23456677777666666543 33346777776
No 17
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=4.1e-34 Score=293.25 Aligned_cols=183 Identities=25% Similarity=0.416 Sum_probs=158.2
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEE----------------------------CCEEEEEeeee
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH----------------------------GDFYLAHQRLA 52 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~----------------------------~~~~l~h~rl~ 52 (493)
||||+|+++..+ ....+..++.+|+|||||++|++.. +++++||+|++
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~l~~l~G~~~IGH~Rys 86 (484)
T PRK07272 11 ECGVFGIWGHPD----AAQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDKLTGQAAIGHVRYA 86 (484)
T ss_pred cCeEEEEECCcc----HHHHHHHHHHHhcccCCccceEEEEeCCeeEEEecCCcccchhcchhhHhcCCCcEEEEEeecc
Confidence 999999997532 3456778899999999999999874 24799999999
Q ss_pred ecCCC--CCCCCcee--CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHHHh--------HhHHhhcc
Q 011115 53 IIDPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLD 118 (493)
Q Consensus 53 ~~~~~--~~~qP~~~--~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~~g--------~~~~~~l~ 118 (493)
|.|.. .|.||+.. .+++++++|||+|+|+.+|+++| .|+.|.+.||||+|++++.+++ .+++++++
T Consensus 87 T~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~Li~~~~~~~~~eai~~~~~~l~ 166 (484)
T PRK07272 87 TAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHLIRRSHNPTFMGKLKEALNTVK 166 (484)
T ss_pred ccCCCCcCCCCCEEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHcc
Confidence 99953 58999976 46889999999999999999999 6899999999999999998864 57899999
Q ss_pred ccEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeCcchhccc-cCCcEEeCCCcEEEecCCceee
Q 011115 119 GMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKR 189 (493)
Q Consensus 119 G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~~ 189 (493)
|+||+++++. ++++++|||+|+|||||+...++.++||||.++|... .+.|++|+||+++.++.++++.
T Consensus 167 G~ya~~i~~~--~~l~a~RDp~GirPL~~G~~~~~~~~~ASE~~Al~~ig~~~ir~l~PGEiv~i~~~g~~~ 236 (484)
T PRK07272 167 GGFAYLLLTE--DKLIAALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEIVIIDDEGIQY 236 (484)
T ss_pred CceeEEEEEC--CEEEEEECCCCCCcEEEEEecCCEEEEEECHHHHhccCCceEEEcCCCeEEEEECCceEE
Confidence 9999999997 7899999999999999987545679999999999765 3568899999999887665443
No 18
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.7e-34 Score=294.58 Aligned_cols=233 Identities=25% Similarity=0.340 Sum_probs=183.2
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEEC----------------------------CEEEEEeeee
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG----------------------------DFYLAHQRLA 52 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~----------------------------~~~l~h~rl~ 52 (493)
||||+|+++..+ ....+..++.+|+|||||++|+++.. ++++||+|++
T Consensus 21 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~~l~~l~G~~~IGH~R~s 96 (479)
T PRK09123 21 ECGVFGILGHPD----AAALTALGLHALQHRGQEAAGIVSFDGERFHSERRMGLVGDHFTDADVIARLPGNRAIGHVRYS 96 (479)
T ss_pred cCeEEEEEcCcc----hHHHHHHHHHHhcCcCccCCEEEEEECCEEEEEecCcchhhhhhhhhhhhccCCCEEEEEEecc
Confidence 999999998542 24567788999999999999998622 3689999999
Q ss_pred ecCCC--CCCCCcee--CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHHHh--------HhHHhhcc
Q 011115 53 IIDPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLD 118 (493)
Q Consensus 53 ~~~~~--~~~qP~~~--~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~~g--------~~~~~~l~ 118 (493)
|.|.. .|.||+.. .+++++++|||+|+|+.+|+++| .|+.|.+.||+|+|++++.+++ .+++++|+
T Consensus 97 T~G~~~~~n~QP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~Li~~~~~~~~~eai~~~~~~L~ 176 (479)
T PRK09123 97 TTGETILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHLIARSRKASFLDRFIDALRQVE 176 (479)
T ss_pred cCCCCCcCCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Confidence 99953 68999986 36789999999999999999999 6889999999999999998765 67899999
Q ss_pred ccEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeCcchhccc-cCCcEEeCCCcEEEecCCc-eeeeeCCCCC
Q 011115 119 GMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG-LKRWYNPTWY 196 (493)
Q Consensus 119 G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~-~~~~~~~~~~ 196 (493)
|+||+++++. ++++++||++|+|||||+.. ++.++||||.++|... ...++.|+||+++.++... +..+......
T Consensus 177 G~ya~vil~~--~~l~a~RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~~r~v~pGeiv~i~~~g~~~~~~~~~~~ 253 (479)
T PRK09123 177 GAYSLVALTN--TKLIGARDPLGIRPLVLGEL-DGSPILASETCALDIIGAEFVRDVEPGELVVIDEDGSIESIKPFPPQ 253 (479)
T ss_pred cceeEEEEEC--CEEEEEECCCCCCceEEEEE-CCEEEEEECchHHhccCCceEEEECCCeEEEEeCCCcEEEEEecCCC
Confidence 9999999997 79999999999999999985 6789999999999754 4678999999999887554 5443211111
Q ss_pred C----------CCCCC---CCCcHHHHHHHHHHHHHHhhccCcceEEEecCCcchhHHHH
Q 011115 197 S----------EAIPS---TPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVAS 243 (493)
Q Consensus 197 ~----------~~~~~---~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa 243 (493)
+ ...|. ....+.++|..+.+.+.+....+. =.+.+=.||+..++
T Consensus 254 ~~~~C~FE~VYfarPdS~~~g~~vy~~R~~~g~~La~~~~~~~---D~Vv~VP~sg~~~A 310 (479)
T PRK09123 254 PARFCIFEYVYFARPDSVVGGRSVYEVRKNIGRELARESPVDA---DVVVPVPDSGVPAA 310 (479)
T ss_pred CCCCChhheEEecCCCceECCeEHHHHHHHHHHHHHHhCCCCC---eEEEEcCccHHHHH
Confidence 1 11221 123567888888888887664332 22445566666544
No 19
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=100.00 E-value=1e-34 Score=271.75 Aligned_cols=172 Identities=29% Similarity=0.459 Sum_probs=153.8
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEE---------------------------CCEEEEEeeeeec
Q 011115 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAII 54 (493)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~~ 54 (493)
|||+|+++... ....+..|+.+|+|||||+.|++.. +.+++||+|+++.
T Consensus 1 CGI~G~~~~~~----~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~ 76 (215)
T cd00714 1 CGIVGYIGKRE----AVDILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVGIGHTRWATH 76 (215)
T ss_pred CEEEEEEcCcc----HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEEcCccHHHHHHHhhhccCCccEEEEEEEccCC
Confidence 99999997532 2356778999999999999999875 4589999999999
Q ss_pred CC--CCCCCCceeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHHHhH----------hHHhhcccc
Q 011115 55 DP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE----------NFVDMLDGM 120 (493)
Q Consensus 55 ~~--~~~~qP~~~~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~~g~----------~~~~~l~G~ 120 (493)
+. ..+.||+...+++++++|||+|||+.+|+++| .|+.+.+.||+|+++++|.+++. +++++|+|+
T Consensus 77 g~~~~~n~qPf~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~ 156 (215)
T cd00714 77 GEPTDVNAHPHRSCDGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGA 156 (215)
T ss_pred CCCCccCCCCCCcCCCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence 96 35899999877889999999999999999999 58899999999999999999886 689999999
Q ss_pred EEEEEEECCC-CEEEEEecCCCCceEEEEEecCcEEEEEeCcchhccccCCcEEeCCCcEEE
Q 011115 121 FSFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYS 181 (493)
Q Consensus 121 fa~~~~d~~~-~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~ 181 (493)
||+++||+.+ ++++++|| .|||||+.. ++.++||||.++|...+..|..|.+|.++.
T Consensus 157 fa~~~~d~~~~~~l~~~RD---~~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~~~~~~~~~ 214 (215)
T cd00714 157 YALAVISKDEPDEIVAARN---GSPLVIGIG-DGENFVASDAPALLEHTRRVIYLEDGDIAV 214 (215)
T ss_pred eEEEEEEeCCCCEEEEEEC---CCCcEEEEc-CCeEEEEECHHHHHHhcCEEEEECCCCEEe
Confidence 9999999876 49999999 499999984 678999999999999999999999999865
No 20
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=7.3e-34 Score=292.07 Aligned_cols=228 Identities=25% Similarity=0.328 Sum_probs=175.9
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEE---------------------------CCEEEEEeeeee
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAI 53 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~ 53 (493)
||||+|+++.+.+ ....+..++.+|+|||||++|++.. +++++||+|++|
T Consensus 33 mCGI~Gi~~~~~~---~~~~~~~gL~~LqHRGqdsaGIa~~~~~~~~~~K~~Glv~~vf~~~~l~~l~G~i~IGHvRysT 109 (500)
T PRK07349 33 ACGVFGVYAPGEE---VAKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILEELPGDLAVGHTRYST 109 (500)
T ss_pred CCeEEEEECCCcC---HHHHHHHHHHHhcccCcCcceEEEEeCCEEEEEecCcchhhhcchhhhhcCCCCEEEEEeeccc
Confidence 9999999985432 3456678999999999999999762 247999999999
Q ss_pred cCCC--CCCCCceeC--CCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHH-------Hh---HhHHhhc
Q 011115 54 IDPA--SGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE-------YG---ENFVDML 117 (493)
Q Consensus 54 ~~~~--~~~qP~~~~--~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~-------~g---~~~~~~l 117 (493)
.|.. .++||+... .++++++|||+|||+.+|+++| .|+.|++.||||+|+++|.+ ++ .++++++
T Consensus 110 ~G~~~~~naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~~~~~~~eai~~~~~~l 189 (500)
T PRK07349 110 TGSSRKANAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDWLEAAISAFQRC 189 (500)
T ss_pred CCCCCccCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 9963 589999863 4789999999999999999999 68999999999999999975 22 5688999
Q ss_pred cccEEEEEEECCCCEEEEEecCCCCceEEEEEec---CcEEEEEeCcchhccc-cCCcEEeCCCcEEEecCCceeee-eC
Q 011115 118 DGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL---DGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKRW-YN 192 (493)
Q Consensus 118 ~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~---~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~~~-~~ 192 (493)
+|+|||++.++ ++++++||++|+|||||+... ++.++||||.++|... .+.|+.|+||+++.++.++++.+ +.
T Consensus 190 ~G~ya~vi~~~--~~l~aaRDp~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir~v~PGeiv~i~~~g~~~~~~~ 267 (500)
T PRK07349 190 QGAFSLVIGTP--EGLMGVRDPNGIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGELVWITEGGLSSFHWA 267 (500)
T ss_pred hhhEEEEEEeC--CEEEEEECCCCCCCeEEEecccCCCCeEEEEeccchhhhcCCceEEEeCCCeEEEEECCceEEEecc
Confidence 99999999987 789999999999999998741 3479999999999765 46689999999998876554332 21
Q ss_pred CC---------CCCCCCCCC---CCcHHHHHHHHHHHHHHhhc--cCcceEEEec
Q 011115 193 PT---------WYSEAIPST---PYDPLVLRQAFENAVIKRLM--TDVPFGVLLS 233 (493)
Q Consensus 193 ~~---------~~~~~~~~~---~~~~~~l~~~l~~aV~~rl~--~~~~v~v~LS 233 (493)
+. |.....|+. ...+.+.|..+-+.+.+... .|.-+++..|
T Consensus 268 ~~~~~~~C~fE~vYfarpdS~~~g~~V~~~R~~~G~~La~~~~~~~DvVv~VP~s 322 (500)
T PRK07349 268 QEPQRKLCIFEMIYFARPDSRMHGESLYSYRQRLGQQLAKESPVDADLVIGVPDS 322 (500)
T ss_pred cCCCcceeEEEeeeccCCCCccCCeEHHHHHHHHHHHHhhhcccCCcEEEEeccc
Confidence 11 111122322 23467788877777765543 2333455555
No 21
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=6.4e-34 Score=289.59 Aligned_cols=226 Identities=25% Similarity=0.344 Sum_probs=174.2
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEE--------------------------CCEEEEEeeeeec
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH--------------------------GDFYLAHQRLAII 54 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~--------------------------~~~~l~h~rl~~~ 54 (493)
||||+|+++ ++ ....+..++.+|+|||+|++|+++. +++++||+|++|.
T Consensus 4 ~CGI~G~~~-~~----~~~~l~~gL~~LqhRG~dsaGIa~~~~~~~~~K~~Glv~~vf~~~~~~~l~g~~~IGH~R~sT~ 78 (442)
T PRK08341 4 KCGIFAAYS-EN----APKKAYYALIALQHRGQEGAGISVWRHRIRTVKGHGLVSEVFKGGSLSRLKSNLAIGHVRYSTS 78 (442)
T ss_pred ccEEEEEEC-CC----cHHHHHHHHHHhhccCcccceEEEECCcEEEEecCCchhhhhcccccccCCCCEEEEEeecccc
Confidence 999999998 32 2456788999999999999999762 3589999999999
Q ss_pred CCCCCCCCceeC--CCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHH----HHh------HhHHhhcccc
Q 011115 55 DPASGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYE----EYG------ENFVDMLDGM 120 (493)
Q Consensus 55 ~~~~~~qP~~~~--~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~----~~g------~~~~~~l~G~ 120 (493)
|...+.||+... +++++++|||+|||+.+|+++| .|+.|++.||||+|++++. ++| .+++++|+|+
T Consensus 79 G~~~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~li~~~~~~~~~~~~ai~~~~~~l~G~ 158 (442)
T PRK08341 79 GSLSEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGISFLWHYSETGDEFEAMREVFNEVKGA 158 (442)
T ss_pred CCCcCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCc
Confidence 977899999753 4789999999999999999999 6899999999999987653 333 2468999999
Q ss_pred EEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeCcchhccccCCcEEeCCCcEEEecCCceeeee--CCC----
Q 011115 121 FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWY--NPT---- 194 (493)
Q Consensus 121 fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~--~~~---- 194 (493)
||++++++ ++++++||++|+|||||+. .+ .++||||.++|......|+.|+||+++.++.++++.+. .+.
T Consensus 159 yal~i~~~--~~l~a~RD~~GirPL~~G~-~~-~~~~ASE~~Al~~~~~~v~~l~PGeiv~i~~~g~~~~~~~~~~~~~C 234 (442)
T PRK08341 159 YSVAILFD--GKIIVARDPVGFRPLSYGE-GD-GHYFASEDSALRMFVNEIRDVFPGEVFVVSEGEVESKVLAREKHHHC 234 (442)
T ss_pred eEEEEEEC--CEEEEEEcCCCceEEEEEE-CC-EEEEEeCcHHHHhhCCeEEEeCCCEEEEEECCceEEEeeccCCCccc
Confidence 99999987 8999999999999999997 34 58999999999988889999999999988766543221 110
Q ss_pred ---CCCCCCCCC---CCcHHHHHHHHHHHHHHhhcc--CcceEEEecCC
Q 011115 195 ---WYSEAIPST---PYDPLVLRQAFENAVIKRLMT--DVPFGVLLSGG 235 (493)
Q Consensus 195 ---~~~~~~~~~---~~~~~~l~~~l~~aV~~rl~~--~~~v~v~LSGG 235 (493)
|.....|+. ...+...|..+-+........ |.-+++..||-
T Consensus 235 ~fe~iYfarpds~~~g~~v~~~R~~~G~~La~~~~~~~D~Vv~VPdsg~ 283 (442)
T PRK08341 235 VFEYIYFARPDSVIDGVSVYSARYRMGVELARESPAEGDVVIAVPDSGR 283 (442)
T ss_pred eEEEEEecCCccccCCcCHHHHHHHHHHHhhcccCCCCceEEEecCchH
Confidence 011112221 223556676666666655433 33345555554
No 22
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.9e-33 Score=286.90 Aligned_cols=234 Identities=25% Similarity=0.369 Sum_probs=182.4
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEE---------------------------CCEEEEEeeeee
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAI 53 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~ 53 (493)
||||+|+++.++ ....+..++.+|+|||||++|++.. +++++||+|++|
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqhRG~dsaGia~~d~~~~~~~k~~GlV~~vf~~~~l~~l~g~~~IGHvRyaT 86 (471)
T PRK06781 11 ECGVFGIWGHEN----AAQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEGLNGKSAIGHVRYAT 86 (471)
T ss_pred cCeEEEEEcCcc----HHHHHHHHHHHhhCcCcCcceEEEEeCCEEEEEecCcchhhhcchhhHhcCCCCEEEEEeEccc
Confidence 999999998642 2456668999999999999999852 246899999999
Q ss_pred cCCC--CCCCCcee--CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHHHh--------HhHHhhccc
Q 011115 54 IDPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (493)
Q Consensus 54 ~~~~--~~~qP~~~--~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~~g--------~~~~~~l~G 119 (493)
.|.. .|+||+.. .+++++++|||+|+|+.+|+++| .|+.|.+.||||+|++++.+++ .+++++++|
T Consensus 87 ~G~~~~~naqP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~Li~~~~~~~~~eai~~~~~~l~G 166 (471)
T PRK06781 87 AGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKRSTKDSLIESVKEALNKVKG 166 (471)
T ss_pred CCCCCcCCCCCeEEecCCCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 9963 58999964 46789999999999999999999 6889999999999999998876 567899999
Q ss_pred cEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeCcchhccc-cCCcEEeCCCcEEEecCCceee--eeCCCC-
Q 011115 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKR--WYNPTW- 195 (493)
Q Consensus 120 ~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~~--~~~~~~- 195 (493)
+||+++++. ++++++||++|+|||||+.. ++.++||||.++|... .+.++.|+||+++.++.++++. +..+..
T Consensus 167 ~ya~vi~~~--~~l~aaRD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~ir~v~pGeiv~i~~~g~~~~~~~~~~~~ 243 (471)
T PRK06781 167 AFAYLLLTG--NEMIVALDPNGFRPLSIGKM-GDAYVVASETCAFDVVGATYIRDVEPGELLIINDEGIHVDRFTNEVDH 243 (471)
T ss_pred cEEEEEEEC--CEEEEEECCCCCCCeEEEEE-CCEEEEEECchHhhhcCCcEEEEeCCCEEEEEECCceEEEecCcCccc
Confidence 999999997 78999999999999999985 6689999999999754 3468889999999887655433 221110
Q ss_pred -------CCCCCCCC---CCcHHHHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHH
Q 011115 196 -------YSEAIPST---PYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASI 244 (493)
Q Consensus 196 -------~~~~~~~~---~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~ 244 (493)
.....|+. ...+.+.|..+-+.+.+....+.. .+.+=-||+..+|.
T Consensus 244 ~~C~fE~vYfarpds~~~g~~vy~~R~~~G~~La~~~~~~~D---~vv~VP~s~~~~A~ 299 (471)
T PRK06781 244 AICSMEYIYFARPDSNIAGINVHAARKNMGKRLAAEAPIEAD---VVTGVPDSSISAAI 299 (471)
T ss_pred ccceEEEEEecCCCceeCCEEHHHHHHHHHHHHhhhCCCCCc---EEEEcChhHHHHHH
Confidence 01122222 234667777777777766543322 34556778876654
No 23
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.4e-33 Score=288.90 Aligned_cols=228 Identities=21% Similarity=0.323 Sum_probs=178.1
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEEC---------------------------CEEEEEeeeee
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAI 53 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~ 53 (493)
||||+|+++...+ ....+..++.+|+|||||++|+++.+ ++++||+|++|
T Consensus 23 mCGI~Gi~~~~~~---~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~d~~l~~l~G~i~IGHvR~sT 99 (510)
T PRK07847 23 ECGVFGVWAPGEE---VAKLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLASLQGHVAIGHCRYST 99 (510)
T ss_pred cCeEEEEECCCcC---HHHHHHHHHHHHhhhCcCcccEEEEeCCEEEEEecCccHHHhhchhhhhhcCCcEEEEeccCCc
Confidence 9999999985422 34566788999999999999987632 36999999999
Q ss_pred cCCC--CCCCCceeC---CCcEEEEEeeEEcChHHHHHHh--cCC-----CccCCCHHHHHHHHHHHHhH---------h
Q 011115 54 IDPA--SGDQPLYNE---DKKIVVTVNGEIYNHEALRERL--TNH-----KFRTGSDCDVIAHLYEEYGE---------N 112 (493)
Q Consensus 54 ~~~~--~~~qP~~~~---~~~~~~~~nG~i~n~~el~~~l--~~~-----~~~~~~D~e~i~~~~~~~g~---------~ 112 (493)
.|.. .++||+... .++++++|||+|+|+.+|+++| .|+ .|.+.||||+|++++.+++. +
T Consensus 100 ~G~~~~~naQP~~~~~~~~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~Li~~~~~~~~~~eai~~ 179 (510)
T PRK07847 100 TGASTWENAQPTFRATAAGGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTALLAHGAADSTLEQAALE 179 (510)
T ss_pred CCCCcccCCCCcCcccCCCCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHhccCCCHHHHHHH
Confidence 9864 589999753 6789999999999999999999 465 48999999999999988763 5
Q ss_pred HHhhccccEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeCcchhccc-cCCcEEeCCCcEEEecCCce--ee
Q 011115 113 FVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGL--KR 189 (493)
Q Consensus 113 ~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~--~~ 189 (493)
++++++|+||++++|. ++++++||++|+|||||+.. ++.++||||.++|... .+.|+.|+||+++.++.+++ .+
T Consensus 180 ~~~~l~G~yA~vi~d~--~~L~aaRDp~GirPL~~g~~-~~~~~vASE~~AL~~~g~~~ir~v~PGeiv~I~~~gv~~~~ 256 (510)
T PRK07847 180 LLPTVRGAFCLVFMDE--HTLYAARDPQGVRPLVLGRL-ERGWVVASETAALDIVGASFVREIEPGELIAIDADGLRSTR 256 (510)
T ss_pred HHHHhhhheEEEEEEC--CEEEEEECCCCCCCcEEEEE-CCeEEEEechHHHhccCCcEEEEECcCEEEEEECCceEEEe
Confidence 8999999999999997 78999999999999999985 6779999999999876 67899999999999876543 34
Q ss_pred eeCCCCC-------CCCCCCC---CCcHHHHHHHHHHHHHHhhcc--CcceEEEecC
Q 011115 190 WYNPTWY-------SEAIPST---PYDPLVLRQAFENAVIKRLMT--DVPFGVLLSG 234 (493)
Q Consensus 190 ~~~~~~~-------~~~~~~~---~~~~~~l~~~l~~aV~~rl~~--~~~v~v~LSG 234 (493)
+|.+... ....|+. ...+.+.|..+-+.+.+..+. |.=+.|..||
T Consensus 257 ~~~~~~~~C~fE~vYfarpdS~~~g~~v~~~R~~~G~~La~~~~~~~D~VvpVP~sG 313 (510)
T PRK07847 257 FAEPTPKGCVFEYVYLARPDTTIAGRSVHAARVEIGRRLAREHPVEADLVIPVPESG 313 (510)
T ss_pred ccCCCCCCCeEEEEEecCCcceeCCeEHHHHHHHHHHHHHhhCCCCCeEEEeccCch
Confidence 5543210 1122321 234667777776666665433 2234555553
No 24
>PLN02440 amidophosphoribosyltransferase
Probab=100.00 E-value=3.3e-33 Score=288.68 Aligned_cols=180 Identities=26% Similarity=0.397 Sum_probs=156.6
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEE---------------------------ECCEEEEEeeeee
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQ---------------------------HGDFYLAHQRLAI 53 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~---------------------------~~~~~l~h~rl~~ 53 (493)
||||+|+++..+ ....+..|+.+|+|||||+.|++. .+++++||+|+++
T Consensus 1 MCGI~Gi~~~~~----~~~~~~~~L~~LqHRGqds~Gi~~~d~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT 76 (479)
T PLN02440 1 ECGVVGIFGDPE----ASRLCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESKLDQLPGDIAIGHVRYST 76 (479)
T ss_pred CceEEEEECCcc----HHHHHHHHHHHHHhhCcccceEEEEcCCEEEEEecCCchhhhcchhhhhccCCcEEEEEEeccc
Confidence 999999997431 245678899999999999999976 2357999999999
Q ss_pred cCCC--CCCCCcee--CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHHH--------hHhHHhhccc
Q 011115 54 IDPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEY--------GENFVDMLDG 119 (493)
Q Consensus 54 ~~~~--~~~qP~~~--~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~~--------g~~~~~~l~G 119 (493)
.+.. .+.||+.. ..++++++|||+|+|+.+|+++| .|+.|.+.||+|+|+++|.++ +.+++++++|
T Consensus 77 ~G~~~~~n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~li~~~~~~~~~~a~~~~~~~l~G 156 (479)
T PLN02440 77 AGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHLIAISKARPFFSRIVDACEKLKG 156 (479)
T ss_pred cCCCCccCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHhcc
Confidence 9963 59999985 45789999999999999999999 678899999999999999765 5789999999
Q ss_pred cEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeCcchhccc-cCCcEEeCCCcEEEecCCc
Q 011115 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG 186 (493)
Q Consensus 120 ~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~ 186 (493)
+||+++||+ ++++++||++|+|||||+...++.++||||.++|... .+.|+.|+||+++.++.++
T Consensus 157 ~fa~vi~~~--~~l~a~RD~~G~RPL~~g~~~~~~~~vASE~~al~~~g~~~ir~v~PGeiv~i~~~g 222 (479)
T PLN02440 157 AYSMVFLTE--DKLVAVRDPHGFRPLVMGRRSNGAVVFASETCALDLIGATYEREVNPGEVIVVDKDK 222 (479)
T ss_pred ceeeeEEEC--CEEEEEECCCCCCceEEEEeCCCEEEEEECchHHhccCCcEEEEeCCCeEEEEECCC
Confidence 999999997 6799999999999999987545679999999999875 5678999999998887654
No 25
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=6.4e-32 Score=278.44 Aligned_cols=183 Identities=25% Similarity=0.400 Sum_probs=157.3
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEE---------------------------CCEEEEEeeeee
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAI 53 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~ 53 (493)
||||+|+++.++. +....+..++.+|+|||||++|++.. +++++||+|++|
T Consensus 14 mCGI~Gi~~~~~~--~~~~~~~~gL~~LqhRG~dsaGIa~~~~~~~~~~k~~G~v~~~f~~~~l~~l~g~~~iGHvR~sT 91 (469)
T PRK05793 14 ECGVFGVFSKNNI--DVASLTYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLKGLKGNSAIGHVRYST 91 (469)
T ss_pred CCeEEEEEcCCCc--cHHHHHHHHHHHHhhhCCCcceEEEEeCCEEEEEecccccccccchhhHhccCCcEEEEEeeccc
Confidence 9999999986431 13456778899999999999999753 247899999999
Q ss_pred cCCC--CCCCCceeC--CCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHHHh--------HhHHhhccc
Q 011115 54 IDPA--SGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (493)
Q Consensus 54 ~~~~--~~~qP~~~~--~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~~g--------~~~~~~l~G 119 (493)
.|.. .|+||+... +++++++|||+|+|+.+|+++| .|+.|++.||+|+|++++.+++ .+++++++|
T Consensus 92 ~G~~~~~n~qPf~~~~~~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~li~~~~~~~~~~ai~~~~~~l~G 171 (469)
T PRK05793 92 TGASDLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNLIARSAKKGLEKALVDAIQAIKG 171 (469)
T ss_pred CCCCCCCCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Confidence 9863 589999863 6889999999999999999999 6889999999999999999875 368999999
Q ss_pred cEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeCcchhccc-cCCcEEeCCCcEEEecCCcee
Q 011115 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLK 188 (493)
Q Consensus 120 ~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~ 188 (493)
+|++++++. ++++++||++|+|||||+.. ++.++||||.++|... .+.++.|+||+++.++.++++
T Consensus 172 ~ya~vi~~~--~~l~a~RD~~GirPL~~g~~-~~~~~vASE~~al~~~g~~~~r~v~pGeiv~i~~~g~~ 238 (469)
T PRK05793 172 SYALVILTE--DKLIGVRDPHGIRPLCLGKL-GDDYILSSESCALDTIGAEFIRDVEPGEIVIIDEDGIK 238 (469)
T ss_pred hceEEEEEC--CEEEEEECCCCCCCcEEEEE-CCEEEEEEChHHHhhcCcceEEEeCCCeEEEEECCceE
Confidence 999999997 79999999999999999985 6789999999999864 356889999999988765543
No 26
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=100.00 E-value=4e-32 Score=260.73 Aligned_cols=183 Identities=26% Similarity=0.407 Sum_probs=157.8
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEEC---------------------------CEEEEEeeeeec
Q 011115 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAII 54 (493)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~~ 54 (493)
|||+|+++... ....+..|+..|+|||||+.|++..+ .++|||+|+++.
T Consensus 1 Cgi~g~~~~~~----~~~~~~~~l~~l~~RG~D~~Gi~~~d~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~lgH~R~at~ 76 (252)
T cd00715 1 CGVFGIYGAED----AARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIAIGHVRYSTA 76 (252)
T ss_pred CEEEEEECCcc----hHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEecCCcHHHhhcccchhhCCCcEEEEEEEcccC
Confidence 99999998532 23557789999999999999997642 368999999999
Q ss_pred CCC--CCCCCcee--CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHHHhH---------hHHhhccc
Q 011115 55 DPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE---------NFVDMLDG 119 (493)
Q Consensus 55 ~~~--~~~qP~~~--~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~~g~---------~~~~~l~G 119 (493)
+.. .++||+.. .+++++++|||+|+|+.+|+++| .++.+.+.||+|++++++.+++. ++++.++|
T Consensus 77 g~~~~~n~qPf~~~~~~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l~~~~~~~~~~~~al~~~~~~l~G 156 (252)
T cd00715 77 GSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDDLFEAIIDALERVKG 156 (252)
T ss_pred CCCCccCCCCcEEecCCCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHhhccCCHHHHHHHHHHhccC
Confidence 863 58999986 35789999999999999999999 56778899999999999999984 58999999
Q ss_pred cEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeCcchhccc-cCCcEEeCCCcEEEecCCceeee
Q 011115 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKRW 190 (493)
Q Consensus 120 ~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~~~ 190 (493)
+|+++++|+ ++++++||++|++||||+...++.++||||.++|... .+.+++||||+++.++.+++..+
T Consensus 157 ~~a~~~~d~--~~l~~~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~~~~~~~~l~pg~~~~i~~~~~~~~ 226 (252)
T cd00715 157 AYSLVIMTA--DGLIAVRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVIDDDGLESS 226 (252)
T ss_pred ceEEEEEEC--CEEEEEECCCCCCCeEEEEeCCCeEEEEECHHHhcccCCcEEEEcCCCeEEEEECCceEEE
Confidence 999999998 8999999999999999988533789999999999885 67899999999999876654433
No 27
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=100.00 E-value=3e-32 Score=293.55 Aligned_cols=180 Identities=29% Similarity=0.479 Sum_probs=159.1
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEE---------------------------ECCEEEEEeeeee
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQ---------------------------HGDFYLAHQRLAI 53 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~---------------------------~~~~~l~h~rl~~ 53 (493)
||||+|+++..+ ....+..|+.+|+|||||+.|++. .+++++||+|+++
T Consensus 1 MCGI~g~~~~~~----~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~~igH~R~at 76 (604)
T PRK00331 1 MCGIVGYVGQRN----AAEILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAKLEEEPLPGTTGIGHTRWAT 76 (604)
T ss_pred CcEEEEEEcCcc----HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEECCcCHHHHHhhhccccCCCcEEEEEEecCC
Confidence 999999997542 245677899999999999999987 2357999999999
Q ss_pred cCC--CCCCCCceeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHHH---h-------HhHHhhccc
Q 011115 54 IDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEY---G-------ENFVDMLDG 119 (493)
Q Consensus 54 ~~~--~~~~qP~~~~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~~---g-------~~~~~~l~G 119 (493)
.|. ..++||+.+..++++++|||+|||+++|+++| .|+.|.+.||+|+++++|.++ | .+++++++|
T Consensus 77 ~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~~~a~~~~~~~l~G 156 (604)
T PRK00331 77 HGKPTERNAHPHTDCSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEG 156 (604)
T ss_pred CCCCccccCCccccCCCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHhccC
Confidence 996 35899999777899999999999999999999 588999999999999999887 5 578999999
Q ss_pred cEEEEEEECCC-CEEEEEecCCCCceEEEEEecCcEEEEEeCcchhccccCCcEEeCCCcEEEecCCcee
Q 011115 120 MFSFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLK 188 (493)
Q Consensus 120 ~fa~~~~d~~~-~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~ 188 (493)
+|||++||..+ ++++++||+ |||||+.. ++.++||||.++|......++.|+||+++.++.++++
T Consensus 157 ~~a~~~~d~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~~~~l~pg~~~~i~~~~~~ 222 (604)
T PRK00331 157 AYALAVIDKDEPDTIVAARNG---SPLVIGLG-EGENFLASDALALLPYTRRVIYLEDGEIAVLTRDGVE 222 (604)
T ss_pred eeEEEEEecCCCCEEEEEECC---CceEEEEc-CCeEEEEECHHHHHHhcCEEEEECCCeEEEEECCeEE
Confidence 99999999876 899999997 99999984 6789999999999999899999999999888655443
No 28
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=100.00 E-value=1.9e-32 Score=261.31 Aligned_cols=174 Identities=28% Similarity=0.384 Sum_probs=149.4
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhhhccCC-CCCceEEE------------------------------------CCE
Q 011115 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGP-DWSGLYQH------------------------------------GDF 44 (493)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGp-d~~g~~~~------------------------------------~~~ 44 (493)
|||+|+++..+... ....+..|+.+|+|||| |++|++.. +.+
T Consensus 1 CGI~G~~~~~~~~~-~~~~~~~~l~~lqhRG~~dsaGia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~~~~~~~~~~ 79 (249)
T cd01907 1 CGIFGIMSKDGEPF-VGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRYDLEEYKGYH 79 (249)
T ss_pred CcEEEEEecCCccc-cHHHHHHHHHHHHhcCCCCCceEEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhcCchheEEEE
Confidence 99999998642111 24667889999999999 99999874 348
Q ss_pred EEEEeeeeecCCC--CCCCCceeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHH----HhH-----
Q 011115 45 YLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE----YGE----- 111 (493)
Q Consensus 45 ~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~----~g~----- 111 (493)
++||+|++|.+.. .++||+... +++++|||+|||+.+|+++| .|+.|.+.||+|++++++++ +|.
T Consensus 80 ~igH~R~aT~g~~~~~n~qP~~~~--~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi~~ll~~~~~~~g~~~~a~ 157 (249)
T cd01907 80 WIAHTRQPTNSAVWWYGAHPFSIG--DIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYY 157 (249)
T ss_pred EEEEEeccCCCCCCccCCCCeecC--CEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCCChHHHH
Confidence 9999999998853 489999863 79999999999999999999 68889999999999998864 232
Q ss_pred --------------------hHHhhccccEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeCcchhccc----
Q 011115 112 --------------------NFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD---- 167 (493)
Q Consensus 112 --------------------~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~---- 167 (493)
.++++++|+||++++++ +.++++||++|.|||||+.. ++.++||||.++|...
T Consensus 158 ~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~~~~~ 234 (249)
T cd01907 158 KHIIRMPEEERELLLALRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET-DDYVAIASEECAIREIPDRD 234 (249)
T ss_pred HHHhcCCHhHHHHHHHHHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE-CCEEEEEEcHHHHhccCccc
Confidence 46789999999999997 67999999999999999985 6789999999999876
Q ss_pred cCCcEEeCCCcEEE
Q 011115 168 CEHFEAFPPGHLYS 181 (493)
Q Consensus 168 ~~~i~~l~pG~~~~ 181 (493)
.+.+..+.||+++.
T Consensus 235 ~~~~~~l~pGe~v~ 248 (249)
T cd01907 235 NAKVWEPRPGEYVI 248 (249)
T ss_pred hheEecCCCCceEe
Confidence 57888999999875
No 29
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.7e-32 Score=282.76 Aligned_cols=181 Identities=25% Similarity=0.423 Sum_probs=152.4
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEE---------------------------CCEEEEEeeeee
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAI 53 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~ 53 (493)
||||+|+++.++ ....+..|+.+|+|||||++|++.. +++++||+|++|
T Consensus 1 MCGI~Gi~~~~~----~~~~~~~~L~aLqHRGqdsaGi~~~~~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT 76 (501)
T PRK09246 1 MCGIVGIVGHSP----VNQSIYDALTVLQHRGQDAAGIVTIDGNRFRLRKANGLVRDVFRTRHMRRLQGNMGIGHVRYPT 76 (501)
T ss_pred CceEEEEEcCcC----HHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEccCCccccccCcchHhhCCCCEEEEEEcCCc
Confidence 999999997532 2355778999999999999999872 468999999999
Q ss_pred cCCC--CCCCCce-eCCCcEEEEEeeEEcChHHHHHHh-c--CCCccCCCHHHHHHHHHHHHh-----------------
Q 011115 54 IDPA--SGDQPLY-NEDKKIVVTVNGEIYNHEALRERL-T--NHKFRTGSDCDVIAHLYEEYG----------------- 110 (493)
Q Consensus 54 ~~~~--~~~qP~~-~~~~~~~~~~nG~i~n~~el~~~l-~--~~~~~~~~D~e~i~~~~~~~g----------------- 110 (493)
.|.. .+.||+. +..++++++|||+|+|+++|+++| . +..|.+.||+|+|++++.++.
T Consensus 77 ~G~~~~~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~li~~~l~~~~g~~~~~~~l~eai 156 (501)
T PRK09246 77 AGSSSSAEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNVFAHELQKFRGLPLTPEDIFAAV 156 (501)
T ss_pred CCCCCcccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHHHHHHHHhccccccCccCHHHHH
Confidence 9963 5999997 344569999999999999999999 3 568899999999999998762
Q ss_pred HhHHhhccccEEEEEEECCCCEEEEEecCCCCceEEEEEec---CcEEEEEeCcchhccc-cCCcEEeCCCcEEEecCCc
Q 011115 111 ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL---DGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG 186 (493)
Q Consensus 111 ~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~---~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~ 186 (493)
.+++++++|+||++++.. .++++++||++|+|||||+... ++.++||||.++|... .+.|+.|+||+++.++.++
T Consensus 157 ~~~~~~l~Gays~v~~~~-~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g 235 (501)
T PRK09246 157 AAVHRRVRGAYAVVAMII-GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVAPGEAIYITEDG 235 (501)
T ss_pred HHHHHhcccceeeEEEec-CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCceEEEEeCCCeEEEEECCC
Confidence 157899999999997753 2679999999999999999742 3479999999999875 4568899999998887543
No 30
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.98 E-value=1.5e-30 Score=266.92 Aligned_cols=226 Identities=25% Similarity=0.361 Sum_probs=175.1
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEE---------------------------CCEEEEEeeeeec
Q 011115 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAII 54 (493)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~~ 54 (493)
|||+|+++...+ ....+..|+.+|+|||||++|++.. +++++||+|+++.
T Consensus 1 CGI~Gi~~~~~~---~~~~~~~~L~~lqhRG~ds~Gia~~d~~~~~~~k~~glv~~v~~~~~l~~l~g~~~IgHvR~aT~ 77 (442)
T TIGR01134 1 CGVVGIYSQEED---AASLTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVFDERHLERLKGNVGIGHVRYSTA 77 (442)
T ss_pred CEEEEEEcCCcc---HHHHHHHHHHHHHhhCccceEEEEEeCCEEEEEEcCCchhhhcchhhhhcccCcEEEEEEEecCC
Confidence 999999975421 2456778999999999999999753 3589999999999
Q ss_pred CCC--CCCCCcee-CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHHHh----------HhHHhhccc
Q 011115 55 DPA--SGDQPLYN-EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG----------ENFVDMLDG 119 (493)
Q Consensus 55 ~~~--~~~qP~~~-~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~~g----------~~~~~~l~G 119 (493)
+.. .+.||+.. ..++++++|||+|+|+.+|+++| .|+.|.+.||+|+|++++.+++ .+++++++|
T Consensus 78 G~~~~~n~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~li~~~~~~~~~~~~ai~~~~~~l~G 157 (442)
T TIGR01134 78 GSSSLSNAQPFVVNSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHLLARERLEEDDLFEAIARVLKRVRG 157 (442)
T ss_pred CCCCccCCCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhcccCCHHHHHHHHHHHhCc
Confidence 863 58999984 34559999999999999999999 5788999999999999999876 478999999
Q ss_pred cEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeCcchhcc-ccCCcEEeCCCcEEEecCCceeee-eCCCC--
Q 011115 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLND-DCEHFEAFPPGHLYSSKSGGLKRW-YNPTW-- 195 (493)
Q Consensus 120 ~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~-~~~~i~~l~pG~~~~~~~~~~~~~-~~~~~-- 195 (493)
+|+++++++ ++++++||++|+|||||+.. ++.++||||.++|.. ..+.++.|+||+++.++.++++.+ +.+..
T Consensus 158 ~falvi~~~--~~L~a~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~g~~~~r~v~pGeiv~i~~~~~~~~~~~~~~~~ 234 (442)
T TIGR01134 158 AYALVIMIG--DGLIAVRDPHGIRPLVLGKR-GDGYVVASESCALDILGAEFIRDVEPGEAVVIDDGGLESRLFANTPRA 234 (442)
T ss_pred cceEEEEEC--CEEEEEECCCCCCCcEEEEe-CCEEEEEeCchHhcccCCcEEEEECCCeEEEEECCcEEEEeccCCCCc
Confidence 999999986 79999999999999999985 678999999999975 357899999999998876654432 11110
Q ss_pred ------CCCCCCCC---CCcHHHHHHHHHHHHHHhhcc--CcceEEEec
Q 011115 196 ------YSEAIPST---PYDPLVLRQAFENAVIKRLMT--DVPFGVLLS 233 (493)
Q Consensus 196 ------~~~~~~~~---~~~~~~l~~~l~~aV~~rl~~--~~~v~v~LS 233 (493)
.....|+. ...+.+.|..+-+.+.+.... |.=++|..|
T Consensus 235 ~c~fe~vYfarpds~~~g~~v~~~R~~~g~~La~~~~~~~D~Vv~VP~s 283 (442)
T TIGR01134 235 PCIFEYVYFARPDSVIDGISVYKARKRMGEKLARESPVEADVVIPVPDS 283 (442)
T ss_pred ceEEEEEEecCCcceECCeEHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 00112221 234556677776766665433 223455555
No 31
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.98 E-value=2.7e-31 Score=286.30 Aligned_cols=179 Identities=30% Similarity=0.485 Sum_probs=157.7
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEE---------------------------CCEEEEEeeeeec
Q 011115 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAII 54 (493)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~~ 54 (493)
|||+|+++..+ ....+..|+.+|+|||||++|++.. +.+++||+|++|.
T Consensus 1 CGI~g~~~~~~----~~~~~~~~l~~l~hRG~ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~ 76 (607)
T TIGR01135 1 CGIVGYIGQRD----AVPILLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQELANKLGEKPLPGGVGIGHTRWATH 76 (607)
T ss_pred CeEEEEECCcc----HHHHHHHHHHHHhccCcccceEEEEeCCEEEEEECCcCHHHHHhhhhcccCCccEEEEEeeccCC
Confidence 99999997432 2356788999999999999999872 3579999999999
Q ss_pred CCC--CCCCCceeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHHHhH----------hHHhhcccc
Q 011115 55 DPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE----------NFVDMLDGM 120 (493)
Q Consensus 55 ~~~--~~~qP~~~~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~~g~----------~~~~~l~G~ 120 (493)
|.. .++||+...+++++++|||+|||+.+|+++| .|+.|.+.||+|+|+++|.++|. +++++|+|+
T Consensus 77 g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~ 156 (607)
T TIGR01135 77 GKPTEENAHPHTDEGGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLIEEYLREGGDLLEAVQKALKQLRGA 156 (607)
T ss_pred CCCCccCCCCcCcCCCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCc
Confidence 963 5899999878889999999999999999999 58899999999999999999885 689999999
Q ss_pred EEEEEEECCC-CEEEEEecCCCCceEEEEEecCcEEEEEeCcchhccccCCcEEeCCCcEEEecCCcee
Q 011115 121 FSFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLK 188 (493)
Q Consensus 121 fa~~~~d~~~-~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~ 188 (493)
|||++||... ++++++||+ |||||+.. ++.++||||.++|......+..|+||+++.++.++++
T Consensus 157 ~a~~i~~~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~l~pg~~~~~~~~~~~ 221 (607)
T TIGR01135 157 YALAVLHADHPETLVAARSG---SPLIVGLG-DGENFVASDVTALLPVTRRVIYLEDGDIAILTRDGVR 221 (607)
T ss_pred eEEEEEecCCCCEEEEEECC---CceEEEEC-CCeEEEEEChHHHHhhCCEEEEeCCCeEEEEECCeeE
Confidence 9999999875 469999996 99999984 7789999999999998889999999999888655443
No 32
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.98 E-value=3.7e-31 Score=240.77 Aligned_cols=129 Identities=23% Similarity=0.383 Sum_probs=114.0
Q ss_pred CCCceeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHHHhHhHHhhccccEEEEEEECCCCEEEEEe
Q 011115 60 DQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVAR 137 (493)
Q Consensus 60 ~qP~~~~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~~g~~~~~~l~G~fa~~~~d~~~~~l~~~r 137 (493)
.|++.+ +++++++||||||+.||+++| .++.|++.||+|+|+++|++||.+++++|+|||||++||++ ++++++|
T Consensus 44 ~~~~~~--~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~~~G~~~l~~L~G~FAfai~D~~-~~L~laR 120 (199)
T cd01909 44 VQVARS--ETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTRLGLHAFRLAEGDFCFFIEDGN-GRLTLAT 120 (199)
T ss_pred eeEeeC--CCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHhHHHHHHcCEEEEEEEEcCC-CEEEEEE
Confidence 455543 468999999999999999999 57889999999999999999999999999999999999999 9999999
Q ss_pred cCCCCceEEEEEecCcEEEEEeCcchhccc------------------cCCcEEeCCCcEEEecCC-------ceeeeeC
Q 011115 138 DAIGITSLYIGWGLDGSIWISSELKGLNDD------------------CEHFEAFPPGHLYSSKSG-------GLKRWYN 192 (493)
Q Consensus 138 D~~G~~pLyy~~~~~~~~~faSe~~~l~~~------------------~~~i~~l~pG~~~~~~~~-------~~~~~~~ 192 (493)
||+|+|||||+. . +.++||||+|+|++. +++|++|||||++.++.. ..++||+
T Consensus 121 Dr~GikPLYy~~-~-~~l~FASEikaLla~~~~~~~~d~~~~~~~~T~~~gI~rL~PG~~l~~~~~g~~~~~~~~~~yW~ 198 (199)
T cd01909 121 DHAGSVPVYLVQ-A-GEVWATTELKLLAAHEGPKAFPFKSAGADTVSGLTGVQRVPPGTVNVLTFDGGSYGTAESRRTWT 198 (199)
T ss_pred CCCCCcCeEEEE-C-CeEEEEeCHHHHhhCcCCCcccCcccCCCCCChhcCceEECCCcEEEEeeCCcccceEEEEEeec
Confidence 999999999987 4 789999999999653 578999999999866422 2678997
Q ss_pred C
Q 011115 193 P 193 (493)
Q Consensus 193 ~ 193 (493)
|
T Consensus 199 p 199 (199)
T cd01909 199 P 199 (199)
T ss_pred C
Confidence 6
No 33
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.97 E-value=1.5e-30 Score=281.04 Aligned_cols=183 Identities=28% Similarity=0.457 Sum_probs=158.0
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEEC----------------------------------CEEE
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG----------------------------------DFYL 46 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~----------------------------------~~~l 46 (493)
||||+|+++..+ ....+..++.+|+|||||++|++... ++++
T Consensus 24 MCGI~G~~~~~~----~~~~~~~~l~~L~hRG~ds~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~~~~~~~~~~~~i 99 (640)
T PTZ00295 24 CCGIVGYLGNED----ASKILLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTTSDSIEILKEKLLDSHKNSTIGI 99 (640)
T ss_pred CCeEEEEEcCcc----hHHHHHHHHHHHHhcCCCeeEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHHhhcCCCCCcEEE
Confidence 999999997542 24567789999999999999998731 2489
Q ss_pred EEeeeeecCC--CCCCCCceeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHH---Hh-------Hh
Q 011115 47 AHQRLAIIDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE---YG-------EN 112 (493)
Q Consensus 47 ~h~rl~~~~~--~~~~qP~~~~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~---~g-------~~ 112 (493)
||+|++|.|. ..|+||+.+..++++++|||+|||+.+|+++| .|+.|.+.||+|+|++++.+ +| .+
T Consensus 100 gH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~li~~~~~~g~~~~~a~~~ 179 (640)
T PTZ00295 100 AHTRWATHGGKTDENAHPHCDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQGEDFQEAVKS 179 (640)
T ss_pred EEeccccCCCCCcCCCCCCCCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 9999999996 35899998777899999999999999999999 68999999999999999864 34 36
Q ss_pred HHhhccccEEEEEEECC-CCEEEEEecCCCCceEEEEEecCcEEEEEeCcchhccccCCcEEeCCCcEEEecCCceeeee
Q 011115 113 FVDMLDGMFSFVLLDTR-DNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWY 191 (493)
Q Consensus 113 ~~~~l~G~fa~~~~d~~-~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~ 191 (493)
++++|+|+||+++||.. .++++++||+ |||||+.. ++.++||||.++|......+..|+||+++.++.++++.|.
T Consensus 180 ~~~~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~~~~l~pGei~~i~~~~~~~~~ 255 (640)
T PTZ00295 180 AISRLQGTWGLCIIHKDNPDSLIVARNG---SPLLVGIG-DDSIYVASEPSAFAKYTNEYISLKDGEIAELSLENVNDLY 255 (640)
T ss_pred HHHHhhhhceEEEEEeCCCCEEEEEECC---CceEEEEc-CceEEEEechHHHHhhCcEEEEeCCCeEEEEECCeEEEEe
Confidence 89999999999999976 4899999998 99999985 6789999999999988888889999999988776665543
No 34
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.97 E-value=4.8e-30 Score=242.32 Aligned_cols=179 Identities=37% Similarity=0.591 Sum_probs=155.5
Q ss_pred EEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEEC---------------------------CEEEEEeeeeec
Q 011115 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAII 54 (493)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~~ 54 (493)
|||+|+++.+............|+..++|||||+.|++... .++++|+|+++.
T Consensus 1 Cgi~g~~~~~~~~~~~~~~~~~~~~~~~~rg~dg~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~R~at~ 80 (220)
T cd00352 1 CGIFGIVGADGAASLLLLLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALGHVRLATN 80 (220)
T ss_pred CEEEEEECCCCcchhhHHHHHHHHHhhcccCCccCCeEEECCCceEEEEeccchhhhhhhhhhhccCCCEEEEEeEeeec
Confidence 99999998765432211111468899999999999999875 689999999999
Q ss_pred CC--CCCCCCceeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHHHh---------HhHHhhccccE
Q 011115 55 DP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG---------ENFVDMLDGMF 121 (493)
Q Consensus 55 ~~--~~~~qP~~~~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~~g---------~~~~~~l~G~f 121 (493)
+. ..++||+....++++++|||+|+|+.+|+++| .+..+.+.||+|+++.+|.+++ .+++++++|.|
T Consensus 81 g~~~~~n~hPf~~~~~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 160 (220)
T cd00352 81 GLPSEANAQPFRSEDGRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKRLDGPF 160 (220)
T ss_pred CCCCCCCCCCcCcCCCCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHHHHHHHhccCCHHHHHHHHHHhCCccE
Confidence 85 46999998776789999999999999999998 4667889999999999999999 89999999999
Q ss_pred EEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeCcchhcccc-CCcEEeCCCcEE
Q 011115 122 SFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC-EHFEAFPPGHLY 180 (493)
Q Consensus 122 a~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~-~~i~~l~pG~~~ 180 (493)
+|+++|+.+++++++||++|.+||||....++.++||||..++.... +.+.+|+||+++
T Consensus 161 ~~~~~d~~~~~l~~~rd~~G~~pL~~~~~~~~~~~~aSe~~~~~~~~~~~~~~l~~g~~~ 220 (220)
T cd00352 161 AFALWDGKPDRLFAARDRFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL 220 (220)
T ss_pred EEEEEECCCCEEEEEECCCCCCCeEEEEeCCCeEEEEecHHHHhhcCcccEEECCCCCCC
Confidence 99999998899999999999999999984267899999999998765 679999999863
No 35
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.96 E-value=6.3e-28 Score=236.69 Aligned_cols=239 Identities=24% Similarity=0.332 Sum_probs=180.5
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEECC----------------------------EEEEEeeee
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGD----------------------------FYLAHQRLA 52 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~----------------------------~~l~h~rl~ 52 (493)
||||+|+++.++.+ ....+..++.+|+|||++++|+...++ +++||+|++
T Consensus 4 ~CGV~Gi~~~~~~~--a~~~~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~l~G~~~IGHvRYs 81 (470)
T COG0034 4 MCGVFGIWGHKDNN--AAQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRKLQGNVGIGHVRYS 81 (470)
T ss_pred cceEEEEecCCccc--hHHHHHHHHHHHhhCCcccccEEEEcCceEEEEecCccchhhcCchhhhhhccCcceeeEeeec
Confidence 99999999986522 356788899999999999999987542 488999999
Q ss_pred ecCCC--CCCCCcee--CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHHHh---------HhHHhhc
Q 011115 53 IIDPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG---------ENFVDML 117 (493)
Q Consensus 53 ~~~~~--~~~qP~~~--~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~~g---------~~~~~~l 117 (493)
|.|.. .+.||+.. ..+.+.++|||.|.|..+|+++| .|..|+++||+|++++++.+.. ...++++
T Consensus 82 TaG~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~~~~~~a~~~~~~~v 161 (470)
T COG0034 82 TAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDEDDIFEAVKEVLRRV 161 (470)
T ss_pred CCCCcccccccceEEecCCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHHHHHHHhhcccccHHHHHHHHHhhc
Confidence 99964 58999975 34579999999999999999999 6888999999999999998643 4678899
Q ss_pred cccEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeCcchhccc-cCCcEEeCCCcEEEe--cCCcee--eeeC
Q 011115 118 DGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSS--KSGGLK--RWYN 192 (493)
Q Consensus 118 ~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~--~~~~~~--~~~~ 192 (493)
.|.|++++..+ +.|+.+|||.|+|||.++...+|.+++|||..+|... .+-++.|.||+++.+ +..++. ++..
T Consensus 162 ~G~ys~v~~~~--~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE~v~i~~~~~g~~s~~~~~ 239 (470)
T COG0034 162 KGAYALVALIK--DGLIAVRDPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVIITIDGDGLESKQVAE 239 (470)
T ss_pred CCcEEEEEEEC--CeEEEEECCCCCccceeeecCCCCEEEEechhhhhcccceEEEecCCceEEEEEecCceeEEEeccC
Confidence 99999999998 6999999999999999998645669999999999775 355789999999874 333232 2222
Q ss_pred CCC--------CCCCCCCC---CCcHHHHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHH
Q 011115 193 PTW--------YSEAIPST---PYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITA 246 (493)
Q Consensus 193 ~~~--------~~~~~~~~---~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~ 246 (493)
+.. .....|++ ...+...|..+-+.+.+...-+..| ..|=.||+.-+|+-.
T Consensus 240 ~~~~~~C~fEyVYFARPDS~Idg~sVy~~R~~mG~~La~e~~~eaDv---VipVPDSg~~aAig~ 301 (470)
T COG0034 240 PPRRAPCSFEYVYFARPDSVIDGISVYEARKRMGEKLAEEIPVEADV---VIPVPDSGRPAAIGY 301 (470)
T ss_pred CCCCccceEEEEEeecCccccCCeeHHHHHHHHHHHHHHhCCccccE---EEecCCCChHHHHHH
Confidence 210 00112221 2235566766666665544332222 233489998777643
No 36
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=99.96 E-value=4.4e-28 Score=221.07 Aligned_cols=138 Identities=29% Similarity=0.562 Sum_probs=122.0
Q ss_pred CCceeCCCcEEEEEeeEEcChHHHHHHhcCCCccCCCHHHHHHHHHHHH---h----HhHHhhccccEEEEEEECCCCEE
Q 011115 61 QPLYNEDKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEY---G----ENFVDMLDGMFSFVLLDTRDNSF 133 (493)
Q Consensus 61 qP~~~~~~~~~~~~nG~i~n~~el~~~l~~~~~~~~~D~e~i~~~~~~~---g----~~~~~~l~G~fa~~~~d~~~~~l 133 (493)
|=+.+.++++++++||||||+.+|+++|. . .++.+|+|+|+++|++| | .+++++|+|+|||++||+.++++
T Consensus 64 ~rl~~~~~~~~~vfnGeIyN~~eLr~~lg-~-~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l 141 (224)
T cd01910 64 PRLFAVKDDIFCLFQGHLDNLGSLKQQYG-L-SKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTV 141 (224)
T ss_pred CcEECCCCCEEEEEEeEEcCHHHHHHHhC-C-CCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEE
Confidence 44556778899999999999999999983 2 36889999999999997 7 47999999999999999999999
Q ss_pred EEEecCCCCceEEEEEecCcEEEEEeCcchhcccc-CCcEEeCCCcEEEecCCceeeeeCCCCCCCCCC
Q 011115 134 IVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC-EHFEAFPPGHLYSSKSGGLKRWYNPTWYSEAIP 201 (493)
Q Consensus 134 ~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~-~~i~~l~pG~~~~~~~~~~~~~~~~~~~~~~~~ 201 (493)
+++||++|++||||+...+|.++||||+++|...| +.+..+||||++.. .+++.+|++|.|..+.+|
T Consensus 142 ~lARD~~Gi~PLYyg~~~dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s-~ggl~~~~~p~~~~~~vp 209 (224)
T cd01910 142 FVASDADGSVPLYWGIAADGSVVFSDDVELVKASCGKSFAPFPKGCFFHS-EGGLRSFEHPMNKLKAVP 209 (224)
T ss_pred EEEEcCCCCcceEEEEeCCCEEEEEeCHHHhhhhhccEEEEECCCCEEeC-CCCEEEeeCCCchhhcCC
Confidence 99999999999999975588999999999999988 78999999999876 667899999988655444
No 37
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.96 E-value=3.5e-28 Score=261.63 Aligned_cols=183 Identities=20% Similarity=0.324 Sum_probs=155.1
Q ss_pred CEEEEEEEcCCCC--chHHHHHHHHHHHhhhccCCCCCceEEE-----------------C-------------------
Q 011115 1 MCGILAVLGCSDD--SQAKRVRVLELSRRLKHRGPDWSGLYQH-----------------G------------------- 42 (493)
Q Consensus 1 McGI~G~~~~~~~--~~~~~~~~~~~~~~l~~RGpd~~g~~~~-----------------~------------------- 42 (493)
||||+|+++.... ..+....+...+.+|+|||+|++|+... +
T Consensus 1 mCGI~g~~~~~~~~~~~~~~~~~~~gL~~Le~RG~dsaGia~~~~~~~~~~~~~~~~~~~~~~~~~k~~G~v~~l~~~~~ 80 (670)
T PTZ00394 1 MCGIFGYANHNVPRTVEQILNVLLDGIQKVEYRGYDSAGLAIDANIGSEKEDGTAASAPTPRPCVVRSVGNISQLREKVF 80 (670)
T ss_pred CceEEEEECCCCccccccHHHHHHHHHHHHhccCcccceEEEecCcccccccccccccCCCcEEEEECCccHHHHHHHHh
Confidence 9999999985410 0023566778899999999999999875 1
Q ss_pred -----------------CEEEEEeeeeecCC--CCCCCCceeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHH
Q 011115 43 -----------------DFYLAHQRLAIIDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDV 101 (493)
Q Consensus 43 -----------------~~~l~h~rl~~~~~--~~~~qP~~~~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~ 101 (493)
++++||+||+|.|. ..|.||+.+.+++++++|||+|||+.+|+++| .|+.|++.||||+
T Consensus 81 ~~~~~~~~~~~~~~~~g~~~igH~R~at~g~~~~~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEv 160 (670)
T PTZ00394 81 SEAVAATLPPMDATTSHHVGIAHTRWATHGGVCERNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEV 160 (670)
T ss_pred cchhhhhccccccCCCCCEEEEEeeceecCCCCcCCCCCcCCCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHH
Confidence 25899999999996 35899999888899999999999999999999 7899999999999
Q ss_pred HHHH----HHHHhH--------hHHhhccccEEEEEEECC-CCEEEEEecCCCCceEEEEEecC----------------
Q 011115 102 IAHL----YEEYGE--------NFVDMLDGMFSFVLLDTR-DNSFIVARDAIGITSLYIGWGLD---------------- 152 (493)
Q Consensus 102 i~~~----~~~~g~--------~~~~~l~G~fa~~~~d~~-~~~l~~~rD~~G~~pLyy~~~~~---------------- 152 (493)
|+++ |.++|. +++++|+|+|||++.+.. .++++++||+ +||+++...+
T Consensus 161 i~~li~~~~~~~g~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~~~~~~~~~~ 237 (670)
T PTZ00394 161 ISVLSEYLYTRKGIHNFADLALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVMKLQTYDLTD 237 (670)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHccCceEEEEEecCCCCEEEEEEcC---CceEEEeccccccccccccccccccc
Confidence 9966 445563 789999999999998633 3899999999 9999998531
Q ss_pred ----cEEEEEeCcchhccccCCcEEeCCCcEEEecCCc
Q 011115 153 ----GSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGG 186 (493)
Q Consensus 153 ----~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~ 186 (493)
+.++|||++.+|...++.|..|++|++..+..+.
T Consensus 238 ~~~~~~~~~aSd~~a~~~~t~~~~~l~dg~~~~~~~~~ 275 (670)
T PTZ00394 238 LSGPLEVFFSSDVNSFAEYTREVVFLEDGDIAHYCDGA 275 (670)
T ss_pred cCCCCcEEEEeChHHHHHhhceEEEecCCeEEEEECCE
Confidence 4799999999999999999999999998876554
No 38
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.96 E-value=3.2e-29 Score=214.44 Aligned_cols=119 Identities=44% Similarity=0.755 Sum_probs=75.1
Q ss_pred EeeeeecCCCCCCCCce-eCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHH---HhHhHHhhccccE
Q 011115 48 HQRLAIIDPASGDQPLY-NEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE---YGENFVDMLDGMF 121 (493)
Q Consensus 48 h~rl~~~~~~~~~qP~~-~~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~---~g~~~~~~l~G~f 121 (493)
|+||++.+...+.||+. ++++++++++||+|||++||+++| .|+.+.+.+|+|+++++|++ ||.+++++++|+|
T Consensus 1 h~rl~~~~~~~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~~~~~~~~~l~G~f 80 (125)
T PF13537_consen 1 HVRLSTDDSDEGAQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYREWGEDFLKRLDGPF 80 (125)
T ss_dssp ------------------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH---HGGGGGGT--EEE
T ss_pred CcccccccccccccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCceE
Confidence 89999977778999999 678899999999999999999999 46788999999999999987 9999999999999
Q ss_pred EEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeCcchhcc
Q 011115 122 SFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLND 166 (493)
Q Consensus 122 a~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~ 166 (493)
|+++||+++++++++||++|+|||||+..+++.++||||+++|++
T Consensus 81 a~v~~d~~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~a 125 (125)
T PF13537_consen 81 AFVIWDKDKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALLA 125 (125)
T ss_dssp EEEEEETTE--EEEEE-TT--S--EEEEETT-EEEEESSHHHHHT
T ss_pred EEEEEeCCCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhcC
Confidence 999999998899999999999999999963369999999999864
No 39
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.96 E-value=3e-28 Score=263.20 Aligned_cols=184 Identities=23% Similarity=0.416 Sum_probs=154.1
Q ss_pred CEEEEEEEcCCCC--chHHHHHHHHHHHhhhccCCCCCceEEEC------------------------------------
Q 011115 1 MCGILAVLGCSDD--SQAKRVRVLELSRRLKHRGPDWSGLYQHG------------------------------------ 42 (493)
Q Consensus 1 McGI~G~~~~~~~--~~~~~~~~~~~~~~l~~RGpd~~g~~~~~------------------------------------ 42 (493)
||||+|+++.... ..+....+...+.+|+|||+|++|+++.+
T Consensus 1 mCGI~g~~~~~~~~~~~~~~~~l~~gL~~Lq~RG~dsaGia~~~~~~~~~~~~~~~k~~G~~~~l~~~~~~~~~~~~l~~ 80 (680)
T PLN02981 1 MCGIFAYLNYNVPRERRFILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGKIESLVRSVYEEVAETDLNL 80 (680)
T ss_pred CceEEEEEccCCccccccHHHHHHHHHHHHhcCCcccceEEEEcCCcccccceEEEEcCCCHHHHHHHHhhhcccccccc
Confidence 9999999975310 11235677788999999999999998731
Q ss_pred ------CEEEEEeeeeecCC--CCCCCCceeC-CCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHH----HH
Q 011115 43 ------DFYLAHQRLAIIDP--ASGDQPLYNE-DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHL----YE 107 (493)
Q Consensus 43 ------~~~l~h~rl~~~~~--~~~~qP~~~~-~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~----~~ 107 (493)
++++||+||+|.|. ..|.||+... .+.++++|||+|||+.+|+++| .|+.|++.||||+|+++ |.
T Consensus 81 ~~~~~g~~~IGH~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~li~~~~~ 160 (680)
T PLN02981 81 DLVFENHAGIAHTRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFD 160 (680)
T ss_pred ccCCCCcEEEEEcccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHHHHHHHH
Confidence 37899999999996 3589999864 3789999999999999999999 68999999999999998 44
Q ss_pred HHhH------------hHHhhccccEEEEEEECCC-CEEEEEecCCCCceEEEEEec--C--------------------
Q 011115 108 EYGE------------NFVDMLDGMFSFVLLDTRD-NSFIVARDAIGITSLYIGWGL--D-------------------- 152 (493)
Q Consensus 108 ~~g~------------~~~~~l~G~fa~~~~d~~~-~~l~~~rD~~G~~pLyy~~~~--~-------------------- 152 (493)
++|. +++++|+|+|||+++++.. ++++++||+ +||+++... +
T Consensus 161 ~~~~~~~~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (680)
T PLN02981 161 KLNEEEGDVTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTSEGFLTKNRDK 237 (680)
T ss_pred hcccccCCCCHHHHHHHHHHhccCccceEEEecCCCCeEEEEecC---CceEEEecCccccccccccccccccccccccc
Confidence 4543 4899999999999999653 899999997 999998752 1
Q ss_pred -cEEEEEeCcchhccccCCcEEeCCCcEEEecCCce
Q 011115 153 -GSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGL 187 (493)
Q Consensus 153 -~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~ 187 (493)
+.+++|||.++|....+.|..|+||+++.++.+++
T Consensus 238 ~~~~~~aSe~~al~~~~~~~~~l~~gei~~i~~~~~ 273 (680)
T PLN02981 238 PKEFFLASDASAVVEHTKRVLVIEDNEVVHLKDGGV 273 (680)
T ss_pred CCcEEEEeCHHHHHHhcCEEEEECCCeEEEEECCeE
Confidence 36999999999999999999999999988876543
No 40
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.95 E-value=8.8e-27 Score=221.24 Aligned_cols=187 Identities=22% Similarity=0.371 Sum_probs=154.1
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEEC----------------------------CEEEEEeeee
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG----------------------------DFYLAHQRLA 52 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~----------------------------~~~l~h~rl~ 52 (493)
||||+|++....-+. -..+.....+|+|||+|+.|+...+ ++++||+|++
T Consensus 1 eCGv~Gi~~a~~~~~--l~~l~~~~~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l~~L~g~~gIGH~RYs 78 (474)
T KOG0572|consen 1 ECGVFGIVAAGEASR--LPELALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKLSQLPGSIGIGHTRYS 78 (474)
T ss_pred CCcEEEEEecCcccc--CcHHHhhhHHHhhCCccccceEeecCCCceEEEeccchhhhhhcHHHHhhCccceeeeeeecc
Confidence 999999998654321 2223333468999999999998754 5899999999
Q ss_pred ecCCC--CCCCCcee--CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHHH-----h----------H
Q 011115 53 IIDPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEY-----G----------E 111 (493)
Q Consensus 53 ~~~~~--~~~qP~~~--~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~~-----g----------~ 111 (493)
|.|.. .+.|||+. .-|.+.++|||++-|.++||++| .|+.+.|.||+|+|++++... + .
T Consensus 79 TaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~~~d~~~ri~ 158 (474)
T KOG0572|consen 79 TAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVDAPDWFARIR 158 (474)
T ss_pred cccccccccccceEeeccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhhhcccCccHHHHHH
Confidence 99865 58999975 35779999999999999999999 688999999999999998642 1 4
Q ss_pred hHHhhccccEEEEEEECCCCEEEEEecCCCCceEEEEEecCc----EEEEEeCcchhccc-cCCcEEeCCCcEEEecCCc
Q 011115 112 NFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDG----SIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG 186 (493)
Q Consensus 112 ~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~----~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~ 186 (493)
++.+.+.|.|++++... ++|+.+||++|.|||..+..... .+++|||..+|... .+-.++|.||+++.++..+
T Consensus 159 ~~~~~~~g~Yslv~m~~--d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PGEiV~i~r~g 236 (474)
T KOG0572|consen 159 DVMELLPGAYSLVFMTA--DKLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPGEIVEISRNG 236 (474)
T ss_pred HHHHhcCCceeEEEEEc--cEEEEEecCCCCccceEeeecCCCCcceEEEEecceeeeecccEEEEeecCceEEEEecCC
Confidence 67889999999999988 78999999999999999875332 79999999999886 6678899999998887654
Q ss_pred eeeee
Q 011115 187 LKRWY 191 (493)
Q Consensus 187 ~~~~~ 191 (493)
.+.-|
T Consensus 237 ~~s~~ 241 (474)
T KOG0572|consen 237 VKSVD 241 (474)
T ss_pred ceeee
Confidence 43333
No 41
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=3.7e-26 Score=234.80 Aligned_cols=179 Identities=28% Similarity=0.455 Sum_probs=156.9
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCCCCCceEEEC---------------------------CEEEEEeeeee
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAI 53 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~ 53 (493)
||||+|+++.+.+ ....+.+.+++|++||.|++|+++.+ .+++|||||+|
T Consensus 1 MCGIvG~i~~~~~---~~~il~~gL~rLEYRGYDSaGiav~~~~~l~~~k~~Gkv~~l~~~~~~~~~~~~~gIgHTRWAT 77 (597)
T COG0449 1 MCGIVGYIGFLRE---AIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEELLNKEPLIGGVGIAHTRWAT 77 (597)
T ss_pred CCcEEEEEcCCcc---HHHHHHHHHHHHHccCCCcccEEEEeCCeEEEEEccCCHHHHHhhhcccccCCceeeeeccccC
Confidence 9999999975443 35678888999999999999998752 58999999999
Q ss_pred cCCC--CCCCCceeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHHHh--------HhHHhhccccE
Q 011115 54 IDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDGMF 121 (493)
Q Consensus 54 ~~~~--~~~qP~~~~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~~g--------~~~~~~l~G~f 121 (493)
.|.. .|+||..+ +++++||||.|.|+.+|+++| +|+.|.+++|||+|.++++++= ...+++|.|.|
T Consensus 78 HG~P~~~NAHPh~~--~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi~hLi~~~~~~~~~~a~~~~l~~l~Gsy 155 (597)
T COG0449 78 HGGPTRANAHPHSD--GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHLLEEIYDTSLLEAVKKVLKRLEGSY 155 (597)
T ss_pred CCCCCcCCCCCCCC--CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHhccee
Confidence 9954 59999976 889999999999999999999 7999999999999999997642 46789999999
Q ss_pred EEEEEECCC-CEEEEEecCCCCceEEEEEecCcEEEEEeCcchhccccCCcEEeCCCcEEEecCCcee
Q 011115 122 SFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLK 188 (493)
Q Consensus 122 a~~~~d~~~-~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~ 188 (493)
|+++.|... ++++++|.. .||..+.. ++..++||++.+++...+.+..|..|.+..+..+++.
T Consensus 156 al~~~~~~~p~~i~~ar~~---sPL~iG~g-~~e~f~aSD~~a~l~~t~~~~~l~dgd~~~~~~~~v~ 219 (597)
T COG0449 156 ALLCTHSDFPDELVAARKG---SPLVIGVG-EGENFLASDVSALLNFTRRFVYLEEGDIAKLTTDGVS 219 (597)
T ss_pred EEEEEecCCCCeEEEEcCC---CCeEEEec-CCcceEecChhhhhhhhceEEEeCCCCEEEEECCcEE
Confidence 999999887 789999998 99999985 7788999999999999999999999998776655443
No 42
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.94 E-value=3e-26 Score=197.77 Aligned_cols=127 Identities=36% Similarity=0.677 Sum_probs=115.3
Q ss_pred CCCCce--EEECCEEEEEeeeeecCCC--CCCCCceeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHH
Q 011115 33 PDWSGL--YQHGDFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLY 106 (493)
Q Consensus 33 pd~~g~--~~~~~~~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~ 106 (493)
||..++ +..+.+++||+|+++.|.. .++||+.+.+++++++|||+|+|+.+|+++| .++.|++.||+|+|++++
T Consensus 1 pd~~~~~~~~~~~~~lgH~R~AT~G~~~~~~~hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~li 80 (133)
T PF13522_consen 1 PDFEGLASWLDGEAALGHTRYATVGSPTEENNHPFSNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAALI 80 (133)
T ss_pred CChHHHHHhcCCCEEEEEeecCCCCCCCCcCCCCCcCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHHH
Confidence 566666 5667799999999999965 4669997777889999999999999999999 588899999999999999
Q ss_pred HHHhHhHHhhccccEEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeC
Q 011115 107 EEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160 (493)
Q Consensus 107 ~~~g~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe 160 (493)
.++|.+++++++|+|++++++...++++++||++|.+||||+.. ++.++||||
T Consensus 81 ~~~g~~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~~~~~-~~~~~~ASE 133 (133)
T PF13522_consen 81 HRWGEEALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLYYGRD-GDGYVFASE 133 (133)
T ss_pred HHHHHHHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEEEEEc-CCEEEEEeC
Confidence 99999999999999999999987799999999999999999985 789999998
No 43
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.81 E-value=7.2e-19 Score=167.60 Aligned_cols=174 Identities=23% Similarity=0.243 Sum_probs=132.9
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHHHhhhccCC------------CCCceEEEC--------------------------
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGP------------DWSGLYQHG-------------------------- 42 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGp------------d~~g~~~~~-------------------------- 42 (493)
||+|+|+++.+.. ....+..-...|.+|+. |+.|+....
T Consensus 1 MCr~~gy~g~~~~---l~~~l~~~~~sL~~qs~~~~~~~~~~~~~DGwGia~~~~~~~~~~~~~k~~~pa~~d~~l~~l~ 77 (251)
T TIGR03442 1 MCRHLAYLGAPVS---LADLLLDPPHSLLVQSYQPREMRHGLVNADGFGVGWYDSGKDTVPFRYRSTQPIWNDINFASLA 77 (251)
T ss_pred CceEeeecCCCee---HHHheeCCCcchHHhCcchhhhcCCCcCCCcceEEEecCCCCCCceEEeCCCccccChhHHHHH
Confidence 9999999986311 23344444455555543 888876531
Q ss_pred -----CEEEEEeeeeecCC-C--CCCCCceeCCCcEEEEEeeEEcChH-----HHHHHh--cCC-CccCCCHHHHHHHHH
Q 011115 43 -----DFYLAHQRLAIIDP-A--SGDQPLYNEDKKIVVTVNGEIYNHE-----ALRERL--TNH-KFRTGSDCDVIAHLY 106 (493)
Q Consensus 43 -----~~~l~h~rl~~~~~-~--~~~qP~~~~~~~~~~~~nG~i~n~~-----el~~~l--~~~-~~~~~~D~e~i~~~~ 106 (493)
.++++|.|.++.|. . .|+|||.. ++++++|||.|.|++ +|+++| .++ .+.+.||+|++++++
T Consensus 78 ~~~~s~~~i~HvR~AT~G~~~~~~N~hPf~~--g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~li 155 (251)
T TIGR03442 78 RYVESGCVLAAVRSATVGMAIDESACAPFSD--GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALL 155 (251)
T ss_pred hhcccceEEEEeeeCCCCCCcchhcCCCCCc--CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHHHH
Confidence 47899999999983 2 59999985 689999999999987 566666 343 678999999999888
Q ss_pred HHHhH------------hHHhhcccc-------EEEEEEECCCCEEEEEecCCCCceEEEEEecCcEEEEEeCcchhccc
Q 011115 107 EEYGE------------NFVDMLDGM-------FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD 167 (493)
Q Consensus 107 ~~~g~------------~~~~~l~G~-------fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~ 167 (493)
.+... ++++.+.|. |++++.|+ ++++++||+. ||||... ++.++||||. |...
T Consensus 156 ~~~~~~~~~~~~~~ai~~~~~~l~~~~~~~~~~~n~~~sdg--~~l~a~R~~~---~L~~~~~-~~~~vvASEp--l~~~ 227 (251)
T TIGR03442 156 LNRLLENDPRALEEALAEVLLILFSAAAAPRVRLNLLLTDG--SRLVATRWAD---TLYWLKD-PEGVIVASEP--YDDD 227 (251)
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHHHhhCcccceEEEEEcC--CEEEEEEeCC---eEEEEEc-CCEEEEEeCC--cCCC
Confidence 76531 356677777 99999998 8999999995 9999975 5689999997 3332
Q ss_pred cCCcEEeCCCcEEEecCCcee
Q 011115 168 CEHFEAFPPGHLYSSKSGGLK 188 (493)
Q Consensus 168 ~~~i~~l~pG~~~~~~~~~~~ 188 (493)
..++.|+||+++.+++++++
T Consensus 228 -~~W~~v~pge~v~i~~~~v~ 247 (251)
T TIGR03442 228 -PGWQDVPDRHLLSVSEDDVT 247 (251)
T ss_pred -CCceEeCCCeEEEEECCcEE
Confidence 48999999999998776543
No 44
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=99.79 E-value=1e-18 Score=172.62 Aligned_cols=183 Identities=23% Similarity=0.339 Sum_probs=139.1
Q ss_pred CEEEEEEEcCCCCch--HHHHHHHHHHHhhhccCCCCCceEEEC-----------------------------------C
Q 011115 1 MCGILAVLGCSDDSQ--AKRVRVLELSRRLKHRGPDWSGLYQHG-----------------------------------D 43 (493)
Q Consensus 1 McGI~G~~~~~~~~~--~~~~~~~~~~~~l~~RGpd~~g~~~~~-----------------------------------~ 43 (493)
||||||+.+.-.... .+.+.+...+.+|.+||.|+.|+..++ .
T Consensus 1 MCGIF~Y~N~l~~R~R~eIid~Li~GLqRLEYRGYDSaGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q~~~l~~~f~sH 80 (670)
T KOG1268|consen 1 MCGIFGYCNFLIERTRGEIIDTLIDGLQRLEYRGYDSAGIAIDGDELESLLIYKQTGKVSSLKEEINNQNLNLDEKFISH 80 (670)
T ss_pred CcceeeeeccccCCcHHHHHHHHHHHHHHhhccCCCCCceeecCCcccchhhhcccCceeehhHHHhhcCcccceeeeee
Confidence 999999998754322 234556667889999999999999865 4
Q ss_pred EEEEEeeeeecCCC--CCCCCcee-CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHH----Hh----
Q 011115 44 FYLAHQRLAIIDPA--SGDQPLYN-EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE----YG---- 110 (493)
Q Consensus 44 ~~l~h~rl~~~~~~--~~~qP~~~-~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~----~g---- 110 (493)
++++|+||++.|.. .|+||..+ +.+.++++|||-|.|+++|++.| +|+.|.+++|||+++.++.. .+
T Consensus 81 ~gIAHTRWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL~~~~~D~~~~~~~ 160 (670)
T KOG1268|consen 81 CGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKLYKHIYDTSPEDLD 160 (670)
T ss_pred eeeeeeehhhcCCCCccCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHHHHHHHHHHhhCCCccc
Confidence 78999999999943 59999985 45789999999999999999999 79999999999999988864 23
Q ss_pred -----HhHHhhccccEEEEEEECCC-CEEEEEecCCCCceEEEEEe----------------------------------
Q 011115 111 -----ENFVDMLDGMFSFVLLDTRD-NSFIVARDAIGITSLYIGWG---------------------------------- 150 (493)
Q Consensus 111 -----~~~~~~l~G~fa~~~~d~~~-~~l~~~rD~~G~~pLyy~~~---------------------------------- 150 (493)
...+++++|.|++++-...- +++...|+. -||..+..
T Consensus 161 F~~lv~~v~k~lEGaFalvfkS~hfP~e~Va~Rrg---SPlliGvKs~~kls~d~~~V~y~~~~~~~~~~~~~~d~~~~~ 237 (670)
T KOG1268|consen 161 FHVLVELVLKELEGAFGLLFKSSHFPGEVVAARKG---SPLLIGVKSKTKLSVDFFPVEYGDTQEVSYLKLNKTDTKASL 237 (670)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhcCCcceeeeccC---CcceeeecccccccccceeeeccccceecccccCCccccccc
Confidence 34689999999999854332 788888876 33333210
Q ss_pred ---cCc--EEEEEeCcchhccccCCcEEeCCCcEEEecCCc
Q 011115 151 ---LDG--SIWISSELKGLNDDCEHFEAFPPGHLYSSKSGG 186 (493)
Q Consensus 151 ---~~~--~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~ 186 (493)
.+. .++|||+..++..+.+.|--|.-+.+..+.+++
T Consensus 238 ~~~~~~~vEff~aSDasa~IEhT~rV~flEDddia~v~dG~ 278 (670)
T KOG1268|consen 238 HFLAGSPVEFFTASDASALIEHTKRVLFLEDDDIAHVSDGE 278 (670)
T ss_pred ccccCCceEEEEecCcchhheecceeEEeccCcEEEEecCc
Confidence 011 567778777777777766666666665555443
No 45
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=99.73 E-value=1.2e-16 Score=159.05 Aligned_cols=111 Identities=29% Similarity=0.407 Sum_probs=85.3
Q ss_pred CEEEEEeeeeecCCC--CCCCCceeCCCcEEEEEeeEEcChHHHHHHh--cCCCccC----------------CCHHHHH
Q 011115 43 DFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRT----------------GSDCDVI 102 (493)
Q Consensus 43 ~~~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~----------------~~D~e~i 102 (493)
.++++|+|++|.+.. .++||+. +++|||||.|...+++.+ .+..+.+ .||+|++
T Consensus 196 ~~~i~H~RysTnt~p~w~~AqPf~------~laHNGeInt~~~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS~~l 269 (361)
T PF00310_consen 196 HFAIGHQRYSTNTFPSWENAQPFR------ALAHNGEINTIRGNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDSEVL 269 (361)
T ss_dssp SEEEEEEEE-SSSSCSGGGSSSEE------EEEEEEEETTHHHHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HHHHH
T ss_pred eEEEEEEecCCCCCCcchhcChHH------HhhhccccccHHHHHHHHHhhcccccCccccchhhcccccCCCCChHHHH
Confidence 589999999999865 4899997 899999999999999998 4666655 8999998
Q ss_pred HHHHHHH---h--------------------------------HhHHhhccccEEEEEEECCCCEEEEEecCCCCceEEE
Q 011115 103 AHLYEEY---G--------------------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYI 147 (493)
Q Consensus 103 ~~~~~~~---g--------------------------------~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy 147 (493)
.++++.. | ..+.+.++|.|++++.|. +.+++++||.|.||+.|
T Consensus 270 ~~~le~l~~~g~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~~~~g--~~~~a~~Dr~GLRP~~~ 347 (361)
T PF00310_consen 270 DNLLELLLRRGRSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAAIIFTDG--NGVGAFLDRNGLRPLRY 347 (361)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEEEEEECS--SEEEEEE-TT--S--EE
T ss_pred HHHHHHHHhcCCCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceEEEEEeC--CEEEEEECCCCCcceEE
Confidence 7776532 2 235678999999999988 67999999999999999
Q ss_pred EEecCcEEEEEeCc
Q 011115 148 GWGLDGSIWISSEL 161 (493)
Q Consensus 148 ~~~~~~~~~faSe~ 161 (493)
+...++.+++|||.
T Consensus 348 ~~~~d~~~v~aSE~ 361 (361)
T PF00310_consen 348 GITEDGLVVLASEA 361 (361)
T ss_dssp EEETTCEEEEESST
T ss_pred EEECCCEEEEEeCC
Confidence 98757889999983
No 46
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.72 E-value=1.2e-16 Score=154.02 Aligned_cols=134 Identities=24% Similarity=0.283 Sum_probs=111.6
Q ss_pred CEEEEEeeeeecCC--CCCCCCceeCCCcEEEEEeeEEcChHHHHHHh--cC-CCccCCCHHHHHHHHHHHHh-------
Q 011115 43 DFYLAHQRLAIIDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TN-HKFRTGSDCDVIAHLYEEYG------- 110 (493)
Q Consensus 43 ~~~l~h~rl~~~~~--~~~~qP~~~~~~~~~~~~nG~i~n~~el~~~l--~~-~~~~~~~D~e~i~~~~~~~g------- 110 (493)
.++++|+|+++.|. ..+.||+.. ++++++|||.|+|+++|+..+ .+ ..+.+.||+|++++++.+..
T Consensus 81 ~~~l~H~R~At~G~~~~~n~hPf~~--~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~~~~ 158 (257)
T cd01908 81 PLVLAHVRAATVGPVSLENCHPFTR--GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERDPLD 158 (257)
T ss_pred cEEEEEEecCCCCCCccccCCCccc--CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcCCcc
Confidence 47899999999994 358999987 379999999999999999988 34 56889999999999886541
Q ss_pred --------HhHHhhcc-----ccEEEEEEECCCCEEEEEecCCCCceEEEEEec-----------------CcEEEEEeC
Q 011115 111 --------ENFVDMLD-----GMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL-----------------DGSIWISSE 160 (493)
Q Consensus 111 --------~~~~~~l~-----G~fa~~~~d~~~~~l~~~rD~~G~~pLyy~~~~-----------------~~~~~faSe 160 (493)
.+.++.|. |.|++++.|. ++++++||+. .+||||.... ++.++||||
T Consensus 159 ~~~~~~al~~~~~~l~~~~~~~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vvaSE 235 (257)
T cd01908 159 PAELLDAILQTLRELAALAPPGRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVASE 235 (257)
T ss_pred hHHHHHHHHHHHHHHHHhCcCeEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEEEeC
Confidence 23567777 7899999887 8899999998 8999998753 368999999
Q ss_pred cchhccccCCcEEeCCCcEEEecC
Q 011115 161 LKGLNDDCEHFEAFPPGHLYSSKS 184 (493)
Q Consensus 161 ~~~l~~~~~~i~~l~pG~~~~~~~ 184 (493)
.-+... .++.|+||+++.++.
T Consensus 236 ~l~~~~---~w~~v~~ge~~~i~~ 256 (257)
T cd01908 236 PLTDDE---GWTEVPPGELVVVSE 256 (257)
T ss_pred CCCCCC---CceEeCCCEEEEEeC
Confidence 877654 789999999988764
No 47
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.69 E-value=6.1e-16 Score=154.80 Aligned_cols=135 Identities=21% Similarity=0.244 Sum_probs=110.0
Q ss_pred CEEEEEeeeeecCCC--CCCCCceeCCCcEEEEEeeEEcChHHHHHHhc--C-----------------CCccCCCHHHH
Q 011115 43 DFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERLT--N-----------------HKFRTGSDCDV 101 (493)
Q Consensus 43 ~~~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nG~i~n~~el~~~l~--~-----------------~~~~~~~D~e~ 101 (493)
.++++|+|++|.+.. ..+||+. +++|||||+|...+++.+. . ....+.||+++
T Consensus 202 ~~al~H~RfSTNT~p~W~~AqPfr------~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~~ 275 (413)
T cd00713 202 AFALVHSRFSTNTFPSWPLAQPFR------YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSAS 275 (413)
T ss_pred EEEEEEEecCCCCCCCcccCCcce------eEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHHH
Confidence 489999999998854 4789996 5999999999999988771 1 12235899999
Q ss_pred HHHHHHHH---h--------------------------------HhHHhhccccEEEEEEECCCCEEEEEecCCCCceEE
Q 011115 102 IAHLYEEY---G--------------------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLY 146 (493)
Q Consensus 102 i~~~~~~~---g--------------------------------~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pLy 146 (493)
+.++++-. | ..+++.++|.|++++.|+ +.++++||+.|.|||+
T Consensus 276 ld~~le~l~~~g~~l~~A~~mliPeaw~~~~~m~~~~r~fYey~~~~me~~dGp~aiv~~dg--~~i~a~rDrnGlRPl~ 353 (413)
T cd00713 276 LDNVLELLVRSGRSLPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTDG--RQVGASLDRNGLRPAR 353 (413)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCChhhccCccCCHHHHHHHHHHHHHhccCCCcEEEEEEeC--CEEEEEeCCCCCcceE
Confidence 88877532 2 145678999999999998 8999999999999999
Q ss_pred EEEecCcEEEEEeCcchhccccCCcE---EeCCCcEEEecCC
Q 011115 147 IGWGLDGSIWISSELKGLNDDCEHFE---AFPPGHLYSSKSG 185 (493)
Q Consensus 147 y~~~~~~~~~faSe~~~l~~~~~~i~---~l~pG~~~~~~~~ 185 (493)
|+...++.+++|||..++......|. +|.||+++.++..
T Consensus 354 ~~~t~d~~~v~ASE~gal~~~~~~V~~kg~l~PGe~v~id~~ 395 (413)
T cd00713 354 YVITKDGLLIMSSEVGVVDVPPEKVVEKGRLGPGEMLLVDLE 395 (413)
T ss_pred EEEECCCEEEEEeCCcccCCCcceeeecCCCCCCeEEEEECC
Confidence 99865667999999999966566676 8999999887643
No 48
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=99.47 E-value=2.6e-12 Score=115.21 Aligned_cols=132 Identities=31% Similarity=0.581 Sum_probs=110.4
Q ss_pred CCcEEEEEeeEEcChHHHHHHhcCCCccCCCHHHHHHHHHHHH---h----HhHHhhccccEEEEEEECCCCEEEEEecC
Q 011115 67 DKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEY---G----ENFVDMLDGMFSFVLLDTRDNSFIVARDA 139 (493)
Q Consensus 67 ~~~~~~~~nG~i~n~~el~~~l~~~~~~~~~D~e~i~~~~~~~---g----~~~~~~l~G~fa~~~~d~~~~~l~~~rD~ 139 (493)
-..+.++|-|.|.|...|++++ |. -++.++.-++.++|+.. | .+.++.|+|.|+||++|..++++++|||.
T Consensus 74 ~DdIfCiF~G~L~Nl~~L~qqY-GL-sK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~ 151 (228)
T PF12481_consen 74 VDDIFCIFLGSLENLCSLRQQY-GL-SKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDS 151 (228)
T ss_pred cCCEEEEEecchhhHHHHHHHh-Cc-CcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecC
Confidence 3569999999999999999998 22 25778888999999754 3 57899999999999999999999999999
Q ss_pred CCCceEEEEEecCcEEEEEeCcchhccccC-CcEEeCCCcEEEecCCceeeeeCCCCCCCCCC
Q 011115 140 IGITSLYIGWGLDGSIWISSELKGLNDDCE-HFEAFPPGHLYSSKSGGLKRWYNPTWYSEAIP 201 (493)
Q Consensus 140 ~G~~pLyy~~~~~~~~~faSe~~~l~~~~~-~i~~l~pG~~~~~~~~~~~~~~~~~~~~~~~~ 201 (493)
-|..||||+...||.++||++...|...|. .....|+|+++... ++++.|-.|....+..|
T Consensus 152 ~G~vpLyWGi~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~f~S~-~Gl~sfehP~nk~k~~p 213 (228)
T PF12481_consen 152 DGSVPLYWGIAADGSLVFSDDLELIKEGCGKSFAPFPAGCFFSSE-GGLRSFEHPKNKVKAMP 213 (228)
T ss_pred CCCcceEEEEeCCCCEEEcCCHHHHHhhhhhccCCCCcceEEEec-CceEeecCCcccccccc
Confidence 999999999988899999999999977764 55689999988765 55777777655444333
No 49
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=99.47 E-value=4e-13 Score=119.38 Aligned_cols=126 Identities=17% Similarity=0.134 Sum_probs=85.2
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeee--ccCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHHHH
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~--~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~ 304 (493)
.+.++||||+||+++++++.+... .++.++++ ++....+...++++|+. |++++.+.++..+..+...
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~---------~~v~~v~~~~g~~~~~~~~~~~~~a~~-g~~~~~~~~~~~~~~~~~~ 72 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYG---------LNPLAVTVDNGFNSEEAVKNIKNLIKK-GLDLDHLVINPEEMKDLQL 72 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhC---------CceEEEEeCCCCCCHHHHHHHHHHHHh-CCCeEEEecCHHHHHHHHH
Confidence 478999999999999999987641 25555555 44433456889999999 8887777776655443322
Q ss_pred HHHH-hhcccccccccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcccccCCChhHH
Q 011115 305 EVIY-HVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEF 364 (493)
Q Consensus 305 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~~~~~~~~~~~ 364 (493)
.... ..+.+. ..........+.+.|++.|++++++|+++||+|+||+.++..+..+.+
T Consensus 73 ~~l~~~~~~p~--~~~~~~~~~~~~~~A~~~g~~~il~G~~~de~~~Gy~~~~~~~~~~~~ 131 (154)
T cd01996 73 ARFKAKVGDPC--WPCDTAIFTSLYKVALKFGIPLIITGENPAQEFGGIREEEGGIIDERR 131 (154)
T ss_pred HHHhcccCCCC--hhhhHHHHHHHHHHHHHhCcCEEEeCcCHHHhcccccccccchhHHHH
Confidence 2211 112221 111223344667788899999999999999999999987665544444
No 50
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=99.39 E-value=5.2e-12 Score=126.55 Aligned_cols=118 Identities=17% Similarity=0.143 Sum_probs=85.0
Q ss_pred cceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeee--eccCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHHH
Q 011115 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFC--VGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (493)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t--~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l 303 (493)
-.+.|++|||+||+++++++++.. |.++.++| .++....+.+.++++++.+|++|+.+.++++.+.+.+
T Consensus 60 yD~iV~lSGGkDSs~la~ll~~~~---------gl~~l~vt~~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d~~~~~~l~ 130 (343)
T TIGR03573 60 YDCIIGVSGGKDSTYQAHVLKKKL---------GLNPLLVTVDPGWNTELGVKNLNNLIKKLGFDLHTITINPETFRKLQ 130 (343)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHh---------CCceEEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHH
Confidence 348899999999999998886543 23444444 4454333556899999999999999999877765555
Q ss_pred HHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 011115 304 EEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (493)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~ 354 (493)
...+.....|. ..........+.+.|++.|++++++|+++||+||||..
T Consensus 131 ~~~~~~~~~pc--~~c~~~~~~~l~~~A~~~gi~~Il~G~~~dE~fgGy~~ 179 (343)
T TIGR03573 131 RAYFKKVGDPE--WPQDHAIFASVYQVALKFNIPLIIWGENIAEEYGGDSE 179 (343)
T ss_pred HHHHhccCCCc--hhhhhHHHHHHHHHHHHhCCCEEEeCCCHHHhcCCccc
Confidence 55444333222 11122345567788999999999999999999999874
No 51
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=99.24 E-value=1.3e-10 Score=114.22 Aligned_cols=133 Identities=23% Similarity=0.234 Sum_probs=100.1
Q ss_pred CEEEEEeeeeecCCC--CCCCCceeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCCHHHHHHHHHHH---H------
Q 011115 43 DFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE---Y------ 109 (493)
Q Consensus 43 ~~~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nG~i~n~~el~~~l--~~~~~~~~~D~e~i~~~~~~---~------ 109 (493)
.++++|+|.+|.... ..+|||. .++|||||.++.-.++.+ .++.+.+.+|+|.+..++-- .
T Consensus 203 ~~~l~HsRFSTNT~p~W~~AHPfr------~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~a~l~p~~~~~~sDs~~ 276 (371)
T COG0067 203 AIALVHTRFSTNTFPSWPLAHPFR------LLVHNGEINTYGGNRNWLEARGYKFESPTDGEVLAKLLPILMRGGSDSAS 276 (371)
T ss_pred eEEEEEeccCCCCCCCCCccCcce------eeeecceecccccHHHHHHHhhcccccCccHHHHHHHHHHhcccCCcchh
Confidence 488999999998754 4889996 469999999999888888 68889999999998887731 1
Q ss_pred -----------h--HhHHhhccccEEEEEEE-CCCCEEEEEecCCCCceEEEEEecCcEEEEEeCcchhccccCCcEEeC
Q 011115 110 -----------G--ENFVDMLDGMFSFVLLD-TRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFP 175 (493)
Q Consensus 110 -----------g--~~~~~~l~G~fa~~~~d-~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~ 175 (493)
| ..-...++|.||++.-. -..+...+++|+.+.+|.+-+.. +..+.++|+..+++.. .-|.
T Consensus 277 ~dn~lE~l~~~G~~l~~a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa-~~~f~dgse~gA~ldr----ngLr 351 (371)
T COG0067 277 LDNALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPA-DIVFTDGSEEGAILDR----NGLR 351 (371)
T ss_pred hhHHHHHHHhcCcCchhHHHhcCchhhccCCCCCcceEEEEehhhhCCCCccCCc-ceeEEeeeeeeeeecc----CCCC
Confidence 2 12345778889988754 11367888899999999988763 6678888998888653 3467
Q ss_pred CCcEEEecCCc
Q 011115 176 PGHLYSSKSGG 186 (493)
Q Consensus 176 pG~~~~~~~~~ 186 (493)
|+.++..+.+.
T Consensus 352 p~Ry~~t~d~~ 362 (371)
T COG0067 352 PARYWITKDGE 362 (371)
T ss_pred cceEEEecCCE
Confidence 77776655443
No 52
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.13 E-value=4.8e-10 Score=126.29 Aligned_cols=133 Identities=22% Similarity=0.204 Sum_probs=99.0
Q ss_pred CEEEEEeeeeecCCCC--CCCCceeCCCcEEEEEeeEEcChHHHHHHh--c----------------CCCccCCCHHHHH
Q 011115 43 DFYLAHQRLAIIDPAS--GDQPLYNEDKKIVVTVNGEIYNHEALRERL--T----------------NHKFRTGSDCDVI 102 (493)
Q Consensus 43 ~~~l~h~rl~~~~~~~--~~qP~~~~~~~~~~~~nG~i~n~~el~~~l--~----------------~~~~~~~~D~e~i 102 (493)
.+++.|+|.+|..... .+|||. .++|||||.-..-.++.+ . ...-...||++.+
T Consensus 213 ~~al~HsRFSTNT~PsW~~AqPFR------~laHNGEINTi~gN~nwm~are~~l~s~~~~~~~~~~Pii~~~~SDSa~l 286 (1485)
T PRK11750 213 AICVFHQRFSTNTLPRWPLAQPFR------YLAHNGEINTITGNRQWARARAYKFQTPLIPDLQEAAPFVNETGSDSSSL 286 (1485)
T ss_pred EEEEEECcCCCCCCCCCCcCCCce------eeeeccccccHHHHHHHHHHHHHhccCCCcchHHhhCCcCCCCCChHHHH
Confidence 4899999999987653 689995 589999998555444333 1 1112357899876
Q ss_pred HHHH---HHHh--------------------------------HhHHhhccccEEEEEEECCCCEEEEEecCCCCceEEE
Q 011115 103 AHLY---EEYG--------------------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYI 147 (493)
Q Consensus 103 ~~~~---~~~g--------------------------------~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pLyy 147 (493)
-.++ .+.| ...++-++|.|++++.|. +.+++.|||.|.|||.|
T Consensus 287 Dn~lElL~~~G~sl~~A~~mliPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaaiv~~~g--~~i~A~~DrnGlRPlr~ 364 (1485)
T PRK11750 287 DNMLELLLAGGMDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVMTDG--RYAACNLDRNGLRPARY 364 (1485)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEEEEEeC--CEEEEecCCCCCccceE
Confidence 4443 3333 124556799999999998 89999999999999988
Q ss_pred EEecCcEEEEEeCcchhccccCCc-E--EeCCCcEEEec
Q 011115 148 GWGLDGSIWISSELKGLNDDCEHF-E--AFPPGHLYSSK 183 (493)
Q Consensus 148 ~~~~~~~~~faSe~~~l~~~~~~i-~--~l~pG~~~~~~ 183 (493)
+...++.+++|||..++......+ + +|.||+++.++
T Consensus 365 ~~~~d~~~i~aSE~g~ldi~~~~vvrkg~l~PGemi~id 403 (1485)
T PRK11750 365 VITKDKLITLASEVGIWDYQPDEVVEKGRVGPGELLVID 403 (1485)
T ss_pred EEEcCCEEEEEecceeeecccceeEEecccCCCeEEEEe
Confidence 776677899999999887554444 4 79999998765
No 53
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.10 E-value=7.9e-10 Score=106.25 Aligned_cols=119 Identities=18% Similarity=0.215 Sum_probs=82.2
Q ss_pred HHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCC--CcHHHHHHHHHHhCCcceEEEeC
Q 011115 218 VIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVADYLGTVHHEFHFT 295 (493)
Q Consensus 218 V~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~--~d~~~A~~va~~lg~~~~~~~~~ 295 (493)
++..+.+..++.+++|||+||+++++++.+.. .++.++++..+.. .|...|+++|+++|++|+.+.++
T Consensus 5 l~~~l~~~~~vlVa~SGGvDSs~ll~la~~~g----------~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~ 74 (252)
T TIGR00268 5 LRNFLKEFKKVLIAYSGGVDSSLLAAVCSDAG----------TEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVKID 74 (252)
T ss_pred HHHHHHhcCCEEEEecCcHHHHHHHHHHHHhC----------CCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcH
Confidence 44455566789999999999999999998752 5788888876433 46788999999999999988874
Q ss_pred hhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCccccccCCc
Q 011115 296 VQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (493)
Q Consensus 296 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~ 353 (493)
+ +.+.+ . ...+..........+..+.+.|++.|+++++||+++|+++..++
T Consensus 75 ~--~~~~~---~--~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~rp 125 (252)
T TIGR00268 75 K--MINPF---R--ANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHRP 125 (252)
T ss_pred H--HHHHH---H--hCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCCcccccccH
Confidence 3 11111 1 11111111111122234566788899999999999999876543
No 54
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.10 E-value=7.2e-10 Score=102.08 Aligned_cols=117 Identities=21% Similarity=0.271 Sum_probs=82.5
Q ss_pred hhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCC--cHHHHHHHHHHhCCcceEEEeChhh
Q 011115 221 RLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP--DLKYAKEVADYLGTVHHEFHFTVQD 298 (493)
Q Consensus 221 rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~--d~~~A~~va~~lg~~~~~~~~~~~~ 298 (493)
-+....++.|++|||.|||++|.+|.+.+ |.++.++|+..+-.+ +.+.|+..|+.+|+.|..+.++..+
T Consensus 13 ~ik~~~kv~vAfSGGvDSslLa~la~~~l---------G~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~ 83 (269)
T COG1606 13 AIKEKKKVVVAFSGGVDSSLLAKLAKEAL---------GDNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMD 83 (269)
T ss_pred HHhhcCeEEEEecCCccHHHHHHHHHHHh---------ccceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeehhhcc
Confidence 34444589999999999999999998877 568999999776443 6789999999999999998875322
Q ss_pred hHHHHHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCccccccCCc
Q 011115 299 GIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (493)
Q Consensus 299 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~ 353 (493)
++..+ .+.+...++-..-.-.+.+.|.+.|.+++++|-.+|++++.-|
T Consensus 84 -----~~~~~--n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~~RP 131 (269)
T COG1606 84 -----PEFKE--NPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFDYRP 131 (269)
T ss_pred -----hhhcc--CCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhcCCCc
Confidence 12221 1111100000111223456678889999999999999998444
No 55
>PRK14561 hypothetical protein; Provisional
Probab=99.02 E-value=1.9e-09 Score=99.11 Aligned_cols=106 Identities=23% Similarity=0.273 Sum_probs=73.5
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHHHHHH
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEV 306 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~ 306 (493)
+|+++||||+||+++++++.+.. ...+.+++.++ .+|.++|+++|+.+|++|+.+.++.+. .+...+.
T Consensus 2 kV~ValSGG~DSslll~~l~~~~---------~v~a~t~~~g~--~~e~~~a~~~a~~lGi~~~~v~~~~~~-~~~~~~~ 69 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERFY---------DVELVTVNFGV--LDSWKHAREAAKALGFPHRVLELDREI-LEKAVDM 69 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhcC---------CeEEEEEecCc--hhHHHHHHHHHHHhCCCEEEEECCHHH-HHHHHHH
Confidence 48999999999999999886541 12234455554 468899999999999999999987654 5555555
Q ss_pred HHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 011115 307 IYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (493)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDel 348 (493)
.+..+.|... ...+..+.+.. ++ .|++++.+|+..|.+
T Consensus 70 ~~~~~~P~~~--~~~l~~~~l~~-~a-~g~~~Ia~G~n~DD~ 107 (194)
T PRK14561 70 IIEDGYPNNA--IQYVHEHALEA-LA-EEYDVIADGTRRDDR 107 (194)
T ss_pred HHHcCCCCch--hHHHHHHHHHH-HH-cCCCEEEEEecCCCc
Confidence 5555444321 11223333444 33 789999999999984
No 56
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.00 E-value=3.4e-09 Score=101.71 Aligned_cols=132 Identities=23% Similarity=0.284 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC--CCcHHHHHHHHHHhC
Q 011115 209 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLG 286 (493)
Q Consensus 209 ~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~va~~lg 286 (493)
.+...|.+.|+.. ....+.+.||||+||+++++++++.... .++.++++.... ..|...|+++|+++|
T Consensus 9 ~l~~~l~~~~~~~--~~~~vvv~lSGGiDSs~~a~la~~~~~~--------~~v~~~~~~~~~~~~~~~~~a~~~a~~lg 78 (248)
T cd00553 9 ALVLFLRDYLRKS--GFKGVVLGLSGGIDSALVAALAVRALGR--------ENVLALFMPSRYSSEETREDAKELAEALG 78 (248)
T ss_pred HHHHHHHHHHHHh--CCCCEEEeCCCcHHHHHHHHHHHHHhCc--------ccEEEEECCCCCCCHHHHHHHHHHHHHhC
Confidence 3444444444432 2356999999999999999999987621 468888887654 358889999999999
Q ss_pred CcceEEEeChhhhHHHHHHHHHhh--cccccc---cccchHHHHHHHHHHHhCCCeEEEeccCccccccCCc
Q 011115 287 TVHHEFHFTVQDGIDAIEEVIYHV--ETYDVT---TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (493)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~---~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~ 353 (493)
++|+++.+++ ..+.+....... ..+... .+..-+-+..+...|.+.|..|+-||+ .+|++.||.
T Consensus 79 i~~~~i~i~~--~~~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn-~~E~~~G~~ 147 (248)
T cd00553 79 IEHVNIDIDP--AVEAFLALLGESGGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGN-KSELLLGYF 147 (248)
T ss_pred CeEEEeccHH--HHHHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCc-HhHHHhCCe
Confidence 9999887653 223222222110 111110 111112234456677788988888887 668888874
No 57
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=98.99 E-value=2.8e-09 Score=103.02 Aligned_cols=178 Identities=21% Similarity=0.312 Sum_probs=74.5
Q ss_pred CEEEEEEEcCCCCchHHHHHHHHHH--HhhhccCCCCCceEEEC-----------------------------CEEEEEe
Q 011115 1 MCGILAVLGCSDDSQAKRVRVLELS--RRLKHRGPDWSGLYQHG-----------------------------DFYLAHQ 49 (493)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~--~~l~~RGpd~~g~~~~~-----------------------------~~~l~h~ 49 (493)
||=++|+-....... .-.+.... .....+-|||.|+.... .++++|.
T Consensus 1 MC~Llg~s~~~p~~~--~~sl~~~~~~~~~~~~h~DGwGiawy~~~~~~~~k~~~pa~~~~~~~~l~~~~i~S~~~laHv 78 (271)
T PF13230_consen 1 MCRLLGMSSNRPTDI--NFSLTSFAARGGKTPPHPDGWGIAWYDGGGPRVFKSPRPAWNSPNLRLLADYKIRSRLFLAHV 78 (271)
T ss_dssp -------------------------------------EEEEEESSSS-EEEEESS-CCC-HHHHHHHH-H-EEEEEEEEE
T ss_pred Ccccccccccccccc--ccccccccccccCcCCCCCeeEEEEEeCCeEEEEECCCCCcCCchHHHHhhCCccCCEEEEEe
Confidence 999999976432211 11111111 11122348999987643 4789999
Q ss_pred eeeecCCC--CCCCCceeC--CCcEEEEEeeEEcChHHHHHHhcCCCccCCCHHHHHHHHHHHH----h-----------
Q 011115 50 RLAIIDPA--SGDQPLYNE--DKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEY----G----------- 110 (493)
Q Consensus 50 rl~~~~~~--~~~qP~~~~--~~~~~~~~nG~i~n~~el~~~l~~~~~~~~~D~e~i~~~~~~~----g----------- 110 (493)
|.++.|.- .|+|||..+ .++++++|||.|.+.+.+.... +.....+|+|.++.++... +
T Consensus 79 R~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~~~~--~~~~G~TDSE~~F~lll~~l~~~~~~~~~~~~~~~ 156 (271)
T PF13230_consen 79 RAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDILDDR--YQPVGTTDSEHAFCLLLDQLRDRGPDAPPALEELF 156 (271)
T ss_dssp ------------SS-EE----ETTEEEEEEEEETTGGGGHHHH--HT--S--HHHHHHHHHHHTTTTT-HH--HHHHHHH
T ss_pred cccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccCccc--cccCCCcHHHHHHHHHHHHHHHhCCcccccHHHHH
Confidence 99998843 599999853 3679999999999987665322 2246789999999887542 1
Q ss_pred ---HhHHhhcc--ccEEEEEEECCCCEEEEEecC----CCCceEE-------------E---EEecCcEEEEEeCcchhc
Q 011115 111 ---ENFVDMLD--GMFSFVLLDTRDNSFIVARDA----IGITSLY-------------I---GWGLDGSIWISSELKGLN 165 (493)
Q Consensus 111 ---~~~~~~l~--G~fa~~~~d~~~~~l~~~rD~----~G~~pLy-------------y---~~~~~~~~~faSe~~~l~ 165 (493)
.+..+.+. |.+.|++.|. ..+++.|+. .-+++.+ . ....+..+++|||. |.
T Consensus 157 ~~l~~~~~~~~~~~~~N~~lsDG--~~l~a~~~~~l~~~~r~~p~~~~~l~~~~~~~~~~~~~~~~~~~~vVaSeP--Lt 232 (271)
T PF13230_consen 157 EALRELAKEINEYGSLNFLLSDG--ERLFAHRYTSLYYLTRRPPFGKARLFDEDYEVDFSEVTDPDDRAVVVASEP--LT 232 (271)
T ss_dssp HHHHHHHHS-SSSEEEEEEEE-S--S-EEEEEEESSS----------------------EEEEETTTTEEEEESS-----
T ss_pred HHHHHHHHHhccCeeEEEEEECC--ceEEEEEcCCeeEEeccccccccccccchhhhhhhhccCCCCCEEEEEecc--CC
Confidence 12233333 7799999998 799999982 1122221 0 01124567888884 33
Q ss_pred cccCCcEEeCCCcEEEecCCce
Q 011115 166 DDCEHFEAFPPGHLYSSKSGGL 187 (493)
Q Consensus 166 ~~~~~i~~l~pG~~~~~~~~~~ 187 (493)
. -.....||+|+++.+..|++
T Consensus 233 ~-~e~W~~vp~g~~l~~~~G~v 253 (271)
T PF13230_consen 233 D-DEDWEPVPPGSLLVFRDGEV 253 (271)
T ss_dssp --SS--EE--SSEEEE------
T ss_pred C-CCCeEEcCCCcEEEEecccc
Confidence 2 24589999999999887764
No 58
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=98.94 E-value=4.1e-09 Score=98.05 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=75.4
Q ss_pred eEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC--CCcHHHHHHHHHHhCCcceEEEeChhhhHHHHHH
Q 011115 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEE 305 (493)
Q Consensus 228 v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~ 305 (493)
|.+++|||+||++++.++.+.. +..+.++++.... ..|.+.++++|+++|++|+.+.++... ...+
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~---------~~~v~~v~vd~g~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~-~~~~-- 68 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL---------GDRVLAVTATSPLFPRRELEEAKRLAKEIGIRHEVIETDELD-DPEF-- 68 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh---------CCcEEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCccc-cHHH--
Confidence 5689999999999999998764 2367888876543 357889999999999999998876311 1111
Q ss_pred HHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCccccccCC
Q 011115 306 VIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGY 352 (493)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy 352 (493)
.. .............+-.+.+.|++.|+++++||+.+|+.+.++
T Consensus 69 --~~-~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e~~ 112 (202)
T cd01990 69 --AK-NPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDYR 112 (202)
T ss_pred --hc-CCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCccccCcccC
Confidence 10 111110111112223456778889999999999999998764
No 59
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=98.93 E-value=3e-09 Score=102.12 Aligned_cols=134 Identities=20% Similarity=0.220 Sum_probs=87.8
Q ss_pred cHHHHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC---CCCcHHHHHHHH
Q 011115 206 DPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE---GSPDLKYAKEVA 282 (493)
Q Consensus 206 ~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~---~~~d~~~A~~va 282 (493)
..+++.+.|.++|+.+..+ .|.+.||||+||+++++++.+.. +..+.++.+... ...|...|+++|
T Consensus 5 ~~~~l~~~l~~~v~~~~~~--~V~vglSGGiDSsvla~l~~~~~---------~~~~~~~~~~~~~~~~~~e~~~a~~~a 73 (250)
T TIGR00552 5 YVEEIEDFLRGYVQKSGAK--GVVLGLSGGIDSAVVAALCVEAL---------GEQNHALLLPHSVQTPEQDVQDALALA 73 (250)
T ss_pred HHHHHHHHHHHHHHHhCCC--CEEEECCCcHHHHHHHHHHHHhh---------CCceEEEEECCccCCCHHHHHHHHHHH
Confidence 4678999999999987544 56677999999999999998764 224445544322 224789999999
Q ss_pred HHhCCcceEEEeChhhhHHHHHHHHHhh-ccccc---ccccchHHHHHHHHHHHhCCCeEEEeccCccccccCCc
Q 011115 283 DYLGTVHHEFHFTVQDGIDAIEEVIYHV-ETYDV---TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (493)
Q Consensus 283 ~~lg~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~---~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~ 353 (493)
+.+|++|+++.+++... .+....... +..+. ..+..-+.+..+...|.+.|+.++.||+..+ .+.||.
T Consensus 74 ~~lgi~~~~i~i~~~~~--~~~~~~~~~~~~~~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~E-~~~G~~ 145 (250)
T TIGR00552 74 EPLGINYKNIDIAPIAA--SFQAQTETGDELSDFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKSE-LMLGYF 145 (250)
T ss_pred HHhCCeEEEEcchHHHH--HHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHHH-HhhCCe
Confidence 99999999887754321 111100000 00000 0111123445667778889999999999975 567774
No 60
>PRK13980 NAD synthetase; Provisional
Probab=98.90 E-value=7.4e-09 Score=100.23 Aligned_cols=133 Identities=24% Similarity=0.243 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC--CCcHHHHHHHHHHh
Q 011115 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYL 285 (493)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~va~~l 285 (493)
+++...+.+.|++. ....+.+.||||+||+++++++.+.... .++.++++.... ..|...|+++|+++
T Consensus 15 ~~l~~~l~~~v~~~--g~~~vvv~lSGGiDSsv~a~l~~~~~~~--------~~v~av~~~~~~~~~~~~~~a~~la~~l 84 (265)
T PRK13980 15 EIIVDFIREEVEKA--GAKGVVLGLSGGIDSAVVAYLAVKALGK--------ENVLALLMPSSVSPPEDLEDAELVAEDL 84 (265)
T ss_pred HHHHHHHHHHHHHc--CCCcEEEECCCCHHHHHHHHHHHHHhCc--------cceEEEEeeCCCCCHHHHHHHHHHHHHh
Confidence 34444555555442 2357889999999999999999886521 478888887653 34788999999999
Q ss_pred CCcceEEEeChhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCccccccCCc
Q 011115 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (493)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~ 353 (493)
|++|+.+.+++ ..+.+..............+...+.+..+...|.+.|..|+-||...+. +-||.
T Consensus 85 gi~~~~i~i~~--~~~~~~~~~~~~~~~~~~n~~aR~R~~~L~~~A~~~g~lvlgTgn~sE~-~~G~~ 149 (265)
T PRK13980 85 GIEYKVIEITP--IVDAFFSAIPDADRLRVGNIMARTRMVLLYDYANRENRLVLGTGNKSEL-LLGYF 149 (265)
T ss_pred CCCeEEEECHH--HHHHHHHHcccccchHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCHhHH-HhCCc
Confidence 99999988753 2232222111000000001111233345666777889888889877654 45553
No 61
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=98.84 E-value=1.7e-08 Score=101.26 Aligned_cols=113 Identities=21% Similarity=0.192 Sum_probs=78.2
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC------------CCcHHHHHHHHHHhCCcceEEEe
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG------------SPDLKYAKEVADYLGTVHHEFHF 294 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~------------~~d~~~A~~va~~lg~~~~~~~~ 294 (493)
+|++++|||+||+++++++.+. |..+.++++.... ..|...|+++|+.+|++|+.+.+
T Consensus 2 kVlValSGGvDSsvla~lL~~~----------G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~ 71 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKEQ----------GYEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVDF 71 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHHc----------CCcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEeC
Confidence 5899999999999999999874 3578888876521 24678999999999999999988
Q ss_pred ChhhhHHHHHHHHH---hhcccccccccchHH-HHHHHHHHHhCCCeEEEeccCccccc
Q 011115 295 TVQDGIDAIEEVIY---HVETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIF 349 (493)
Q Consensus 295 ~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~-~~~~~~~a~~~g~~v~ltG~GgDelf 349 (493)
..+...+.+...+. ...+|++....+... +..+.+.|.+.|++.+.||+.+|...
T Consensus 72 ~~~f~~~vi~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~ 130 (346)
T PRK00143 72 EKEFWDRVIDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATGHYARIRD 130 (346)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccc
Confidence 65432222222221 223343322222222 33566778889999999999998754
No 62
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=98.82 E-value=2.4e-08 Score=100.34 Aligned_cols=113 Identities=22% Similarity=0.181 Sum_probs=76.5
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC----------CCCcHHHHHHHHHHhCCcceEEEeCh
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE----------GSPDLKYAKEVADYLGTVHHEFHFTV 296 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~----------~~~d~~~A~~va~~lg~~~~~~~~~~ 296 (493)
+|++++|||+||+++++++.+.. .++.++++... ...|...|+++|+.+|++|+.+.++.
T Consensus 1 kVlValSGGvDSsvla~lL~~~g----------~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd~~~ 70 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQG----------YEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVNFEK 70 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHcC----------CcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEECcH
Confidence 47899999999999999998752 46777766332 12578899999999999999998875
Q ss_pred hhhHHHHHHHHH---hhcccccccccchHH-HHHHHHHHHhCCCeEEEeccCccccc
Q 011115 297 QDGIDAIEEVIY---HVETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIF 349 (493)
Q Consensus 297 ~~~~~~l~~~~~---~~~~~~~~~~~~~~~-~~~~~~~a~~~g~~v~ltG~GgDelf 349 (493)
+...+.+...+. ...+|++....+... +..+.+.|.+.|++.+.||+.+|...
T Consensus 71 ~f~~~v~~~~i~~~~~g~tpnpc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~ 127 (349)
T cd01998 71 EYWEKVFEPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKLGADYIATGHYARIEE 127 (349)
T ss_pred HHHHHHHHHHHHHHHcCCCCCchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeee
Confidence 433222222222 122343322222222 23455678889999999999998755
No 63
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=2.1e-08 Score=98.33 Aligned_cols=113 Identities=20% Similarity=0.159 Sum_probs=80.3
Q ss_pred CcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC------C---CcHHHHHHHHHHhCCcceEEEeC
Q 011115 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG------S---PDLKYAKEVADYLGTVHHEFHFT 295 (493)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~------~---~d~~~A~~va~~lg~~~~~~~~~ 295 (493)
..+|.+++|||+|||+.|+++++.. ..|.++++.... + .|...|++||+.+|++|+.+++.
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk~QG----------yeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~ 72 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLKEQG----------YEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFE 72 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHHHcC----------CeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchH
Confidence 4578999999999999999999874 678887764321 1 47789999999999999999986
Q ss_pred hhhh---HHHHHHHHHhhcccccccccchHHHH-HHHHHHHhCCCeEEEeccCccc
Q 011115 296 VQDG---IDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDE 347 (493)
Q Consensus 296 ~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~g~~v~ltG~GgDe 347 (493)
.+-. ++.+.+......+|++...++-.-.| .+.+.|.+.|++-+.||+.+-.
T Consensus 73 ~~y~~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~ 128 (356)
T COG0482 73 KEFWNKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQ 128 (356)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEee
Confidence 4332 23333333344566654444433333 4567778899999999998743
No 64
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=98.80 E-value=7.9e-09 Score=102.85 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=70.3
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCC-----------CcHHHHHHHHHHhCCcceEEEeC
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-----------PDLKYAKEVADYLGTVHHEFHFT 295 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~-----------~d~~~A~~va~~lg~~~~~~~~~ 295 (493)
+|.|++|||+|||+.|+++.+. |.+|..+++...+. .|...|+++|++||++|+.+++.
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~----------G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~ 71 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQ----------GYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLR 71 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHC----------T-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETH
T ss_pred eEEEEccCCHHHHHHHHHHHhh----------cccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChH
Confidence 5889999999999999999986 47888888765433 25778999999999999999986
Q ss_pred hh---hhHHHHHHHHHhhcccccccccchHH-HHHHHHHHHh-CCCeEEEeccCcccccc
Q 011115 296 VQ---DGIDAIEEVIYHVETYDVTTIRASTP-MFLMSRKIKS-LGVKMVISGEGSDEIFG 350 (493)
Q Consensus 296 ~~---~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~-~g~~v~ltG~GgDelfg 350 (493)
.+ .+++.+-+......+|++....|..- +-.+.+.|.+ .|++.+-||+.|--...
T Consensus 72 ~~f~~~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~ 131 (356)
T PF03054_consen 72 EEFWEEVIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKD 131 (356)
T ss_dssp HHHHHHTHHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEee
Confidence 53 23344433334455666433333211 2246677888 89999999999976554
No 65
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=98.80 E-value=3.4e-08 Score=91.78 Aligned_cols=156 Identities=21% Similarity=0.302 Sum_probs=81.8
Q ss_pred eEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeee--ccCCCCcHHHHHHHHHHhCC-cceEEEeCh-hhh----
Q 011115 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGT-VHHEFHFTV-QDG---- 299 (493)
Q Consensus 228 v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~--~~~~~~d~~~A~~va~~lg~-~~~~~~~~~-~~~---- 299 (493)
+.++||||+||+++++.+.+.. ..+.++++ |+....|.+.|+++++++|+ +|+.+.++. .++
T Consensus 2 avvl~SGG~DSt~~l~~~~~~~----------~~v~al~~~YGq~~~~El~~a~~i~~~l~v~~~~~i~l~~~~~~~~s~ 71 (209)
T PF06508_consen 2 AVVLFSGGLDSTTCLYWAKKEG----------YEVYALTFDYGQRHRRELEAAKKIAKKLGVKEHEVIDLSFLKEIGGSA 71 (209)
T ss_dssp EEEE--SSHHHHHHHHHHHHH-----------SEEEEEEEESSSTTCHHHHHHHHHHHHCT-SEEEEEE-CHHHHCSCHH
T ss_pred EEEEeCCCHHHHHHHHHHHHcC----------CeEEEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEeeHHHHHhhCCCc
Confidence 5689999999999999988764 56766665 55555689999999999999 999998872 211
Q ss_pred -HHH---HHHHHHhhccccccc--ccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcccccCCChhHHhHHHHHHHH
Q 011115 300 -IDA---IEEVIYHVETYDVTT--IRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIK 373 (493)
Q Consensus 300 -~~~---l~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~~~~~~~~~~~~~e~~~~~~ 373 (493)
.+. +++.-...+...... .+|.+.+-.++..|.+.|+..++.|..+++ +.+|+.-. ..|.+.+.+.+.
T Consensus 72 L~~~~~~v~~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D-~~~ypDc~-----~~F~~~~~~~~~ 145 (209)
T PF06508_consen 72 LTDDSIEVPEEEYSEESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAED-ASGYPDCR-----PEFIDAMNRLLN 145 (209)
T ss_dssp HHHTT------------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-S-TT--GGGS-----HHHHHHHHHHHH
T ss_pred ccCCCcCCcccccccCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCc-cCCCCCCh-----HHHHHHHHHHHH
Confidence 111 111000001111111 233333334455677789999999998887 57887532 233333222222
Q ss_pred hhcccccccccccccccCceeccccCCh---HHHHHHHcCC
Q 011115 374 ALHQYDCLRANKSTSAWGLEARVPFLDK---DFINVAMAID 411 (493)
Q Consensus 374 ~l~~~~l~r~dr~~~~~gie~r~PflD~---~lve~~~~lP 411 (493)
.. ....+.+..||++. ++++.+..+.
T Consensus 146 ~~------------~~~~v~i~~P~~~~tK~eiv~~~~~lg 174 (209)
T PF06508_consen 146 LG------------EGGPVRIETPLIDLTKAEIVKLGVELG 174 (209)
T ss_dssp HH------------HTS--EEE-TTTT--HHHHHHHHHHTT
T ss_pred hc------------CCCCEEEEecCCCCCHHHHHHHHHHcC
Confidence 11 23467889999885 5666666654
No 66
>PRK00876 nadE NAD synthetase; Reviewed
Probab=98.80 E-value=1.7e-08 Score=99.47 Aligned_cols=83 Identities=25% Similarity=0.279 Sum_probs=66.5
Q ss_pred CcHHHHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC--CCCcHHHHHHHH
Q 011115 205 YDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVA 282 (493)
Q Consensus 205 ~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~va 282 (493)
+..+++.+.|+++|++++.++ +|++.||||+||+++++++.+.... .++.++.+... ..+|...|+.+|
T Consensus 14 ~~~e~i~~~l~~~V~~~~~~~-~VvVgLSGGIDSSvvaaLa~~a~g~--------~~v~av~~~~~~s~~~e~~~A~~lA 84 (326)
T PRK00876 14 AEAERIRAAIREQVRGTLRRR-GVVLGLSGGIDSSVTAALCVRALGK--------ERVYGLLMPERDSSPESLRLGREVA 84 (326)
T ss_pred HHHHHHHHHHHHHHHHHcCCC-CEEEEccCCHHHHHHHHHHHHhhCC--------CcEEEEEecCCCCChHHHHHHHHHH
Confidence 456789999999999988777 8999999999999999999876421 24445554322 345889999999
Q ss_pred HHhCCcceEEEeCh
Q 011115 283 DYLGTVHHEFHFTV 296 (493)
Q Consensus 283 ~~lg~~~~~~~~~~ 296 (493)
+++|++|+.+.+++
T Consensus 85 ~~LGi~~~~i~i~~ 98 (326)
T PRK00876 85 EHLGVEYVVEDITP 98 (326)
T ss_pred HHcCCCEEEEECch
Confidence 99999999998875
No 67
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=98.80 E-value=2.9e-08 Score=93.20 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=94.2
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC--CCcHHHHHHHHHHhCCc-ceEEEeChhhhH--H
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTV-HHEFHFTVQDGI--D 301 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~va~~lg~~-~~~~~~~~~~~~--~ 301 (493)
++.|+||||+||+++++++.+.. ..+.++|+.+.. ..|.+.|+++|+++|++ |+++.++.-..+ .
T Consensus 3 kvvVl~SGG~DSt~~l~~a~~~~----------~~v~alt~dygq~~~~El~~a~~ia~~~gi~~h~vid~~~l~~l~~s 72 (231)
T PRK11106 3 RAVVVFSGGQDSTTCLIQALQQY----------DEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLDVTLLNELAVS 72 (231)
T ss_pred cEEEEeeCcHHHHHHHHHHHhcC----------CeEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc
Confidence 58899999999999999886532 467788776543 45889999999999996 888776531100 0
Q ss_pred HHHHH-HH----h--hccccccccc--chHHHHHHHHHHHhCCCeEEEeccCccccccCCcccccCCChhHHhHHHHHHH
Q 011115 302 AIEEV-IY----H--VETYDVTTIR--ASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKI 372 (493)
Q Consensus 302 ~l~~~-~~----~--~~~~~~~~~~--~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~~~~~~~~~~~~~e~~~~~ 372 (493)
.+.+. +. . .+.+....++ +.+........|.+.|++.++.|-.+|+. ++|+. .+..|.+. +
T Consensus 73 ~Lt~~~~~~p~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~-~~YpD-----cr~~Fi~A----~ 142 (231)
T PRK11106 73 SLTRDSIPVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDF-SGYPD-----CRDEFVKA----L 142 (231)
T ss_pred ccccccccCCccccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcC-CCCCC-----CCHHHHHH----H
Confidence 11000 00 0 0001111122 22222223335778999999999999884 77863 33444433 2
Q ss_pred HhhcccccccccccccccCceeccccCCh---HHHHHHHcC
Q 011115 373 KALHQYDCLRANKSTSAWGLEARVPFLDK---DFINVAMAI 410 (493)
Q Consensus 373 ~~l~~~~l~r~dr~~~~~gie~r~PflD~---~lve~~~~l 410 (493)
+.+.. ..+..++.+..||++. ++++.+..+
T Consensus 143 ~~~~~--------~~~~~~i~I~aPl~~lsK~eI~~l~~~l 175 (231)
T PRK11106 143 NHAVS--------LGMAKDIRFETPLMWLNKAETWALADYY 175 (231)
T ss_pred HHHHH--------hccCCCcEEEecCCCCCHHHHHHHHHHc
Confidence 22211 1122348899999984 566665543
No 68
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.79 E-value=3e-08 Score=90.74 Aligned_cols=117 Identities=20% Similarity=0.209 Sum_probs=75.0
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC--C--CCcHHHHHHHHHHhCCcceEEEeChhhhHHH
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--G--SPDLKYAKEVADYLGTVHHEFHFTVQDGIDA 302 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~--~--~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~ 302 (493)
+|.+++|||.||++++.++.+...... .+.++.++++... . ..+..+++++|+.+|++++.+.++.. + ..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~-~~ 74 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYP----YGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEE-Y-TD 74 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcC----CCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhhh-c-ch
Confidence 478999999999999999988653210 0136777777543 2 24678999999999999998887532 1 00
Q ss_pred HHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCcccccc
Q 011115 303 IEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFG 350 (493)
Q Consensus 303 l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfg 350 (493)
... ....................+.+.|++.|+.++++|+.+|++..
T Consensus 75 ~~~-~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~e 121 (185)
T cd01993 75 DIE-VKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEAE 121 (185)
T ss_pred hhh-hhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHHH
Confidence 000 00000011101112234456677888899999999999998643
No 69
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.79 E-value=2.2e-08 Score=100.33 Aligned_cols=115 Identities=19% Similarity=0.175 Sum_probs=76.0
Q ss_pred hccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC---C-CcHHHHHHHHHHhCCcceEEEeChh
Q 011115 222 LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---S-PDLKYAKEVADYLGTVHHEFHFTVQ 297 (493)
Q Consensus 222 l~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~---~-~d~~~A~~va~~lg~~~~~~~~~~~ 297 (493)
+.++.+|.+++|||+||++++.++++. |.++.++++.... + .|...|+++|+.+|++|+.+.++..
T Consensus 2 ~~~~~kVlValSGGVDSsvaa~LL~~~----------G~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~~~~ 71 (360)
T PRK14665 2 MEKNKRVLLGMSGGTDSSVAAMLLLEA----------GYEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDARKV 71 (360)
T ss_pred CCCCCEEEEEEcCCHHHHHHHHHHHHc----------CCeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEecHHH
Confidence 345678999999999999999999875 3578888875432 2 3577899999999999998876532
Q ss_pred h---hHHHHHHHHHhhcccccccccchHHHH-HHHHHHHhCCCeEEEeccCcc
Q 011115 298 D---GIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSD 346 (493)
Q Consensus 298 ~---~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~g~~v~ltG~GgD 346 (493)
- ..+.+.+......++.+....+....| .+.+.|.+.|++.+.||+.+.
T Consensus 72 f~~~v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~ 124 (360)
T PRK14665 72 FRKQIIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVR 124 (360)
T ss_pred HHHHHHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 1 111111111112233322222222222 456777889999999999985
No 70
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=98.76 E-value=1.8e-08 Score=92.25 Aligned_cols=117 Identities=28% Similarity=0.394 Sum_probs=77.8
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeee--ccCCCCcHHHHHHHHHHhCCcceEEEeChhhhHH--H
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGID--A 302 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~--~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~--~ 302 (493)
+..+.||||+||+++++.|.+.. ..|+++|+ |.+...|.+.|+++|+.+|++|+++.++.-.-+. .
T Consensus 4 kavvl~SGG~DStt~l~~a~~~~----------~ev~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid~~~~~~~~~sa 73 (222)
T COG0603 4 KAVVLLSGGLDSTTCLAWAKKEG----------YEVHALTFDYGQRHRKELEAAKELAKKLGVPHHIIDVDLLGEIGGSA 73 (222)
T ss_pred eEEEEccCChhHHHHHHHHHhcC----------CEEEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEechhHHhhcCCCc
Confidence 45689999999999999999864 56776665 5556679999999999999999988765321010 0
Q ss_pred H-HH---HHH-h--hcccccc--cccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 011115 303 I-EE---VIY-H--VETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (493)
Q Consensus 303 l-~~---~~~-~--~~~~~~~--~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~ 354 (493)
+ ++ +.. . .++...+ +.+|.+.+...+-.|...|++.+++|-.+.+ |.|||.
T Consensus 74 Ltd~~~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D-~sgYPD 133 (222)
T COG0603 74 LTDDSIDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEED-FSGYPD 133 (222)
T ss_pred CcCCCccccccccccccCcceEeccccHHHHHHHHHHHHHcCCCeEEEEecccc-cCCCCC
Confidence 0 00 000 0 0101111 1234444445566677889999999998877 567875
No 71
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.72 E-value=6.6e-08 Score=97.16 Aligned_cols=108 Identities=16% Similarity=0.207 Sum_probs=75.1
Q ss_pred cceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC--CCcHHHHHHHHHHhCC-cceEEEeChhhhHHH
Q 011115 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGT-VHHEFHFTVQDGIDA 302 (493)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~va~~lg~-~~~~~~~~~~~~~~~ 302 (493)
.+|.+++|||+|||+++.++.+. |..+.++|+.... ..|.+.|+++|+.+|+ +|+++.+..+...+.
T Consensus 3 ~kVvVA~SGGvDSSvla~~l~e~----------G~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~~eef~e~v 72 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYLQER----------GYAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEGF 72 (400)
T ss_pred CcEEEEEcCChHHHHHHHHHHHc----------CCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHHH
Confidence 57899999999999999998874 3578999886644 4688999999999998 588888765433333
Q ss_pred HHHHH-----HhhcccccccccchHHHHHHHHHHHhCCCeEEEeccC
Q 011115 303 IEEVI-----YHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEG 344 (493)
Q Consensus 303 l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~G 344 (493)
+..++ +...+|.+.. .-.+-.-.+.+.|++.|++.+.+|..
T Consensus 73 i~p~i~aNa~y~G~yPl~~~-nR~~~~~~l~e~A~~~G~~~IA~G~t 118 (400)
T PRK04527 73 VKPLVWAGEGYQGQYPLLVS-DRYLIVDAALKRAEELGTRIIAHGCT 118 (400)
T ss_pred HHHHHhcchhhcCCCCCccc-cHHHHHHHHHHHHHHCCCCEEEecCc
Confidence 33222 2222343221 11122224567788899999999995
No 72
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.70 E-value=1.3e-07 Score=94.60 Aligned_cols=113 Identities=16% Similarity=0.126 Sum_probs=77.9
Q ss_pred cCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCCcHHHHHHHHHHhCCcceEEEeChhh---hH
Q 011115 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQD---GI 300 (493)
Q Consensus 224 ~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~---~~ 300 (493)
.+.+|.+++|||+||++++.++++. |..+.++++... ..|...|+++|+++|++|+.+.++..- .+
T Consensus 4 ~~~kVlVa~SGGvDSsv~a~lL~~~----------G~eV~av~~~~~-~~e~~~a~~va~~LGI~~~vvd~~~~f~~~v~ 72 (362)
T PRK14664 4 SKKRVLVGMSGGIDSTATCLMLQEQ----------GYEIVGVTMRVW-GDEPQDARELAARMGIEHYVADERVPFKDTIV 72 (362)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHc----------CCcEEEEEecCc-chhHHHHHHHHHHhCCCEEEEeChHHHHHHHH
Confidence 3457999999999999999988764 357888888653 345678999999999999998876432 22
Q ss_pred HHHHHHHHhhcccccccccchHH-HHHHHHHHHhCCCeEEEeccCccc
Q 011115 301 DAIEEVIYHVETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDE 347 (493)
Q Consensus 301 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~g~~v~ltG~GgDe 347 (493)
+.+.+......+|++...++... .-.+.+.|.+.|+..+.||+.++-
T Consensus 73 ~~~~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~ 120 (362)
T PRK14664 73 KNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRL 120 (362)
T ss_pred HHhHHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCcccc
Confidence 22222222223444333333222 234677788999999999999964
No 73
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=98.64 E-value=1.5e-07 Score=94.52 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=72.8
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC------------CCCcHHHHHHHHHHhCCcceEEEe
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE------------GSPDLKYAKEVADYLGTVHHEFHF 294 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~------------~~~d~~~A~~va~~lg~~~~~~~~ 294 (493)
+|.+++|||+||+++++++.+.. ..+.++++... ...|.+.|+++|+.+|++|+.+.+
T Consensus 2 kVlValSGGvDSsv~a~lL~~~G----------~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~ 71 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLKQQG----------YEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNF 71 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHHHcC----------CeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 58899999999999999998753 57888887311 113678899999999999999887
Q ss_pred Chhh---hHHHHHHHHHhhcccccccccchHH-HHHHHHHHHhC-CCeEEEeccCc
Q 011115 295 TVQD---GIDAIEEVIYHVETYDVTTIRASTP-MFLMSRKIKSL-GVKMVISGEGS 345 (493)
Q Consensus 295 ~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~-g~~v~ltG~Gg 345 (493)
+.+- +.+.+.+......+|++....+... +..+.+.|.+. |++.+.||+.+
T Consensus 72 ~~~f~~~v~~~~~~~y~~g~tpnpC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya 127 (352)
T TIGR00420 72 QKEYWNKVFEPFIQEYKEGRTPNPDILCNKFIKFGAFLEYAAELLGNDKIATGHYA 127 (352)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 5432 1222222222223444322222222 23455677775 99999999999
No 74
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=98.64 E-value=1.8e-07 Score=92.07 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=74.5
Q ss_pred HHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC--CCCcHHHHHHH-HHHhCCcceEE
Q 011115 216 NAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEV-ADYLGTVHHEF 292 (493)
Q Consensus 216 ~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~v-a~~lg~~~~~~ 292 (493)
+.+++.+.. .++.+++|||+||+++++++.+.. |.++.++++... ...|...+++. ++++|++|+.+
T Consensus 8 ~~l~~~v~~-~kVvValSGGVDSsvla~ll~~~~---------G~~v~av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vv 77 (311)
T TIGR00884 8 EEIREQVGD-AKVIIALSGGVDSSVAAVLAHRAI---------GDRLTCVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYV 77 (311)
T ss_pred HHHHHHhCC-CcEEEEecCChHHHHHHHHHHHHh---------CCCEEEEEEeCCCCChHHHHHHHHHHHHHcCCcEEEE
Confidence 344445544 679999999999999999998865 357888887543 34566677665 45899999988
Q ss_pred EeChhhhHHHHHHHHHhhcccccc-cccchHHHHHHHHHHHhCC-CeEEEeccCcccc
Q 011115 293 HFTVQDGIDAIEEVIYHVETYDVT-TIRASTPMFLMSRKIKSLG-VKMVISGEGSDEI 348 (493)
Q Consensus 293 ~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~g-~~v~ltG~GgDel 348 (493)
..+.. +.+.+.. ...+... .+........+.+.|++.| ++.+++|...|.+
T Consensus 78 d~~e~-fl~~l~~----v~~p~~~r~~~~~~~~~~~~~~A~~~g~~~~la~Gt~~dD~ 130 (311)
T TIGR00884 78 DAKER-FLSALKG----VTDPEEKRKIIGRVFIEVFEREAKKIGDAEYLAQGTIYPDV 130 (311)
T ss_pred eCcHH-HHhhhcC----CCChHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCChhh
Confidence 87532 2222211 1111100 0001111223455677788 9999999998765
No 75
>PTZ00323 NAD+ synthase; Provisional
Probab=98.63 E-value=4.1e-07 Score=88.45 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhhcc--CcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC-CCCcHHHHHHHHHHh
Q 011115 209 VLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPDLKYAKEVADYL 285 (493)
Q Consensus 209 ~l~~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~-~~~d~~~A~~va~~l 285 (493)
++-+...+.++++++. ...+.+.||||+||+++++++.+....... ....+.++..... ...+...|+.+|+.+
T Consensus 28 ~~i~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~---~~~~~~~v~~P~~ss~~~~~~A~~la~~l 104 (294)
T PTZ00323 28 AWIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNS---PIQKNVGLCQPIHSSAWALNRGRENIQAC 104 (294)
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhccccC---CceEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3334444555565544 567899999999999999999987643100 0012334443322 225778999999999
Q ss_pred CCcceEEEeChhhhHHHHHHHHHhhcccccc---------cccchHHHHHHHHHHHhCCCeEEEecc-Ccccc-ccCCcc
Q 011115 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVT---------TIRASTPMFLMSRKIKSLGVKMVISGE-GSDEI-FGGYLY 354 (493)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~a~~~g~~v~ltG~-GgDel-fgGy~~ 354 (493)
|++|+++.+++- .+.+...+......... -.++ ...|.+++.+.+.|...++.|- ..||. .-||..
T Consensus 105 Gi~~~~idi~~l--~~~~~~~i~~~~~~~~~~~~~~n~~ar~R~-~~lY~la~~~~~~g~~~lV~GT~N~sE~~~~Gy~t 181 (294)
T PTZ00323 105 GATEVTVDQTEI--HTQLSSLVEKAVGIKGGAFARGQLRSYMRT-PVAFYVAQLLSQEGTPAVVMGTGNFDEDGYLGYFC 181 (294)
T ss_pred CCcEEEEECcHH--HHHHHHHHhhhhcccchhhHHHhHHHHHHh-HHHHHHHHHHhhcCCCeEEECCCCchhhhHhchHh
Confidence 999999988742 22222222111000000 0111 2336677767677888888888 78885 358754
No 76
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.62 E-value=2e-07 Score=94.07 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=74.0
Q ss_pred cceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCCcHHHHHHHHHHhCCcceE-EEeChhhhHH-HH
Q 011115 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHE-FHFTVQDGID-AI 303 (493)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~va~~lg~~~~~-~~~~~~~~~~-~l 303 (493)
.+|.+++|||+||++++.++.+.. |.++.++++......|.+.|+++|+.+|+.++. +.+. +++.+ .+
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~l---------G~eViavt~d~Gq~~dle~a~~~A~~lGi~~~~viD~~-~ef~~~~i 72 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKETY---------GCEVIAFTADVGQGEELEPIREKALKSGASEIYVEDLR-EEFVRDYV 72 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhh---------CCeEEEEEEecCCHHHHHHHHHHHHHcCCCeEEEEcCH-HHHHHHhH
Confidence 368999999999999999998753 357999998776557899999999999985444 4443 23322 22
Q ss_pred HHHHH-----hhcccccccccchHHHHHHHHHHHhCCCeEEEeccCc
Q 011115 304 EEVIY-----HVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 345 (493)
Q Consensus 304 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~Gg 345 (493)
...+. ....|.+..+......-.+.+.|++.|++++.+|..+
T Consensus 73 ~~~i~~n~~y~g~ypl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~ 119 (399)
T PRK00509 73 FPAIRANALYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTG 119 (399)
T ss_pred HHHHHhChHhcCcCCCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCc
Confidence 22222 2223332222222222245567888999999999987
No 77
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=98.61 E-value=3e-07 Score=83.56 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=64.9
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC--CCc----HHHHHHHHHHhCCcceEEEeChhhhH
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPD----LKYAKEVADYLGTVHHEFHFTVQDGI 300 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d----~~~A~~va~~lg~~~~~~~~~~~~~~ 300 (493)
++.++||||+||++++.++.+. |.++.++++.... ..| ...+.+.+..++.+|+...++..+.
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~----------g~~v~av~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 69 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR----------GIEVDALHFNSGPFTSEKAREKVEDLARKLARYSPGHKLVVIIFTFF- 69 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc----------CCeEEEEEEeCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEeCcHH-
Confidence 4789999999999999999875 3577788775432 222 3344445566777776544443321
Q ss_pred HHHHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 011115 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (493)
Q Consensus 301 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDe 347 (493)
...+......++.............+.+.|.+.|++++++|+.+|.
T Consensus 70 -~~~~~~~~~~~~~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D 115 (177)
T cd01712 70 -VQKEIYGYGKEKYRCILCKRMMYRIAEKLAEELGADAIVTGESLGQ 115 (177)
T ss_pred -HHHHHHHhCCCccHhHHHHHHHHHHHHHHHHHcCCCEEEEccCccc
Confidence 1112122222222211111222234556678899999999998776
No 78
>PRK00919 GMP synthase subunit B; Validated
Probab=98.58 E-value=4.2e-07 Score=88.98 Aligned_cols=124 Identities=18% Similarity=0.174 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC--CCcHHHHHHHHHHhC
Q 011115 209 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLG 286 (493)
Q Consensus 209 ~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~va~~lg 286 (493)
.|.+...+.+++.+.. .++.+++|||+||+++++++.+.. |.++.++++...- ..|.+.++++|+.+
T Consensus 6 ~~~~~~~~~l~~~~~~-~kVlVa~SGGVDSsvla~la~~~l---------G~~v~aV~vD~G~~~~~E~e~a~~~~~~~- 74 (307)
T PRK00919 6 KFIEEAIEEIREEIGD-GKAIIALSGGVDSSVAAVLAHRAI---------GDRLTPVFVDTGLMRKGETERIKETFSDM- 74 (307)
T ss_pred HHHHHHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHHh---------CCeEEEEEEECCCCCHHHHHHHHHHHhcc-
Confidence 3444444556666655 789999999999999999998864 4578888876543 45888999999887
Q ss_pred CcceEEEeChhhhHHHHHHHHHhhcccccc-cccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 011115 287 TVHHEFHFTVQDGIDAIEEVIYHVETYDVT-TIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (493)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDel 348 (493)
++|+.+.++. .+.+.+.. ...+... .+........+.+.|++.|++.+++|...|.+
T Consensus 75 i~~~vvd~~e-~fl~~L~~----v~npe~rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~ 132 (307)
T PRK00919 75 LNLRIVDAKD-RFLDALKG----VTDPEEKRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDW 132 (307)
T ss_pred CCcEEEECCH-HHHHhccC----CCChHHhhhHHHHHHHHHHHHHHHHcCCCEEEECCCCcch
Confidence 8888877653 12232221 1111100 00011112234566778899999999988875
No 79
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=98.58 E-value=3.3e-07 Score=87.20 Aligned_cols=134 Identities=22% Similarity=0.228 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCC--CcHHHHHHHHHHh
Q 011115 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVADYL 285 (493)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~--~d~~~A~~va~~l 285 (493)
+.+.+-|.+-+++. ....+.+.||||+||+++|+++.+.+.. .++.++.+....+ .+...|+.+|+.+
T Consensus 3 ~~l~~~L~~~~~~~--g~~~vVvglSGGiDSav~A~La~~Alg~--------~~v~~v~mp~~~~~~~~~~~A~~la~~l 72 (242)
T PF02540_consen 3 EALVDFLRDYVKKS--GAKGVVVGLSGGIDSAVVAALAVKALGP--------DNVLAVIMPSGFSSEEDIEDAKELAEKL 72 (242)
T ss_dssp HHHHHHHHHHHHHH--TTSEEEEEETSSHHHHHHHHHHHHHHGG--------GEEEEEEEESSTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCeEEEEcCCCCCHHHHHHHHHHHhhh--------ccccccccccccCChHHHHHHHHHHHHh
Confidence 34445555555442 3356889999999999999999998732 4688888863333 3678899999999
Q ss_pred CCcceEEEeChhhhHHHHHHHHHhhc-ccccccccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 011115 286 GTVHHEFHFTVQDGIDAIEEVIYHVE-TYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (493)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~ 354 (493)
|+++..+.+++ ..+.+.+.+.... ......+..-+.+-.++..|...+ .+++....-+|..-||..
T Consensus 73 gi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~Ni~aR~Rm~~ly~~a~~~~-~lVlgT~N~sE~~~Gy~T 139 (242)
T PF02540_consen 73 GIEYIVIDIDP--IFDAFLKSLEPADDDLARGNIQARIRMTTLYALANKYN-YLVLGTGNKSELLLGYFT 139 (242)
T ss_dssp TSEEEEEESHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEBE--CHHHHHHTCSH
T ss_pred CCCeeccchHH--HHHHHhhhhccchhhhhhhhHHHHHHHHHHHHHhcccc-eEEecCCcHHHhhcCccc
Confidence 99999998854 3333322221111 000001111122223333344444 355555556788888854
No 80
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=98.55 E-value=7.4e-07 Score=86.02 Aligned_cols=133 Identities=19% Similarity=0.136 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHh--hccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC-CCcHHHHHHHHHH
Q 011115 208 LVLRQAFENAVIKR--LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPDLKYAKEVADY 284 (493)
Q Consensus 208 ~~l~~~l~~aV~~r--l~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~-~~d~~~A~~va~~ 284 (493)
+.+...+.+++++. +....+|.|++|||.||++++.++.+...... .+..+.++++.... ..+.+.++++|+.
T Consensus 10 ~~~~~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~----~~~~l~av~vd~g~~~~~~~~~~~~~~~ 85 (258)
T PRK10696 10 KRLRRQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAP----INFELVAVNLDQKQPGFPEHVLPEYLES 85 (258)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCC----CCeEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 45666777777763 34566899999999999999999987532210 11356777765421 2244578999999
Q ss_pred hCCcceEEEeChhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCccccc
Q 011115 285 LGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (493)
Q Consensus 285 lg~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelf 349 (493)
+|++++.+.++..... ..... ............-...+.+.|.+.|++++++|+.+|...
T Consensus 86 lgI~~~v~~~~~~~~~---~~~~~--~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~ 145 (258)
T PRK10696 86 LGVPYHIEEQDTYSIV---KEKIP--EGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDDIL 145 (258)
T ss_pred hCCCEEEEEecchhhh---hhhhc--cCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHH
Confidence 9999998775432211 11000 000000000112234556778889999999999999753
No 81
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=98.53 E-value=2.8e-07 Score=85.61 Aligned_cols=115 Identities=24% Similarity=0.374 Sum_probs=73.6
Q ss_pred EEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC--CCcHHHHHHHHHHhCCcceEEEeChhhhHH--HHH
Q 011115 229 GVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTVQDGID--AIE 304 (493)
Q Consensus 229 ~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~va~~lg~~~~~~~~~~~~~~~--~l~ 304 (493)
.++||||+||+++++++.+. |.++.++++.+.. ..|.+.++++|+.+|++|+.+.++.-..+. .+.
T Consensus 2 vv~lSGG~DSs~~~~~~~~~----------g~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~~~~~ 71 (201)
T TIGR00364 2 VVVLSGGQDSTTCLAIAKDE----------GYEVHAITFDYGQRHSRELESARKIAEALGIEHHVIDLSLLKQLGGSALT 71 (201)
T ss_pred EEEeccHHHHHHHHHHHHHc----------CCcEEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEechhhccccccccc
Confidence 58999999999999988774 2578888887643 357889999999999999988875321100 000
Q ss_pred H---HHH-hhccc---ccc--cccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 011115 305 E---VIY-HVETY---DVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (493)
Q Consensus 305 ~---~~~-~~~~~---~~~--~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~ 354 (493)
. ... ..... ... ..++.+.+-.+...|.+.|+..+++|...|++ +.|+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~-~~~~d 129 (201)
T TIGR00364 72 DESEIPPQKSNEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDF-SGYPD 129 (201)
T ss_pred CCCCCCCcCccccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcC-CCCCC
Confidence 0 000 00000 000 01122222345677888999999999999985 66653
No 82
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=98.47 E-value=3e-06 Score=73.49 Aligned_cols=120 Identities=20% Similarity=0.341 Sum_probs=80.0
Q ss_pred CCCCceeCCCcEEEEEeeEEcChHHHHHHhcCCC--ccCCCHHHHHHHHHHHHhHhHHhhccccEEEEEEECCCCEEEEE
Q 011115 59 GDQPLYNEDKKIVVTVNGEIYNHEALRERLTNHK--FRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVA 136 (493)
Q Consensus 59 ~~qP~~~~~~~~~~~~nG~i~n~~el~~~l~~~~--~~~~~D~e~i~~~~~~~g~~~~~~l~G~fa~~~~d~~~~~l~~~ 136 (493)
.-|-+..+ +...-.-|.|||+.-|+.-...+. -..-+|+|++..++.+.|..++.--+|+|+|.+-|+ +++|.+.
T Consensus 40 ~~qk~~~~--~~tayLIGsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~~lG~~aLsLAEGdfcffiE~k-ng~L~l~ 116 (201)
T PF09147_consen 40 PFQKMRFE--RGTAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFTRLGNSALSLAEGDFCFFIEDK-NGELTLI 116 (201)
T ss_dssp -EEEEEET--TEEEEEES--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHHHH-GGGGGG--SSEEEEEEET-TSEEEEE
T ss_pred ceeEEEec--CccEEEEEEeccHHHHHHhhheeeccceeeccHHHHHHHHHHhhhhhhhhhcCceEEEEecC-CCcEEEE
Confidence 33444443 456777899999988876552221 234689999999999999999999999999999887 4999999
Q ss_pred ecCCCCceEEEEEecCcEEEEEeCcchhccc--------------------------cCCcEEeCCCcEEEec
Q 011115 137 RDAIGITSLYIGWGLDGSIWISSELKGLNDD--------------------------CEHFEAFPPGHLYSSK 183 (493)
Q Consensus 137 rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~--------------------------~~~i~~l~pG~~~~~~ 183 (493)
+|.-|..|+|.-+. +..++...+|-+... .+++.++.||++..+.
T Consensus 117 Tds~G~~pv~lV~~--~~~WiTn~LK~V~~~eg~~a~df~~E~~v~q~~l~~d~~sPi~na~RlkPGsin~l~ 187 (201)
T PF09147_consen 117 TDSRGFNPVYLVQS--KFIWITNSLKLVSAVEGEGAFDFMPESLVIQSSLRPDNFSPIKNAQRLKPGSINVLT 187 (201)
T ss_dssp E-SSSSS-EEEEES--SSEEEES-HHHHHHHH-TTSS-B--HHHHSS-S---TT--SBTTEEEE-SSEEEEEE
T ss_pred ecCCCCceEEEEec--CceEEecceEEEEEeeccccccccchhHHHhhhccCCCcCccccceecCCCceEEEE
Confidence 99999999999763 456667766654321 2578899999986553
No 83
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.46 E-value=1.1e-06 Score=88.79 Aligned_cols=111 Identities=20% Similarity=0.205 Sum_probs=72.5
Q ss_pred cceEEEecCCcchhHHHHHHHHHhcccccccccCC-cceeeeeccCC-CCcHHHHHHHHHHhCCcceEEEeChhhhH-HH
Q 011115 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGT-QLHSFCVGLEG-SPDLKYAKEVADYLGTVHHEFHFTVQDGI-DA 302 (493)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~-~~~~~t~~~~~-~~d~~~A~~va~~lg~~~~~~~~~~~~~~-~~ 302 (493)
.+|.+++|||+||++++.++.+.. |. ++.++++.... ..|.+.++++|+.+|++++.+.+.. ++. +.
T Consensus 3 ~kVvvA~SGGvDSsvll~lL~e~~---------g~~~Viav~vd~g~~~~e~~~a~~~a~~lGi~~~vvd~~e-ef~~~~ 72 (394)
T PRK13820 3 KKVVLAYSGGLDTSVCVPLLKEKY---------GYDEVITVTVDVGQPEEEIKEAEEKAKKLGDKHYTIDAKE-EFAKDY 72 (394)
T ss_pred CeEEEEEeCcHHHHHHHHHHHHhc---------CCCEEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEeCHH-HHHHHH
Confidence 468999999999999999987653 33 78888876643 3578899999999999988877653 233 22
Q ss_pred HHHHHHhhc---cccccc-ccchHHHHHHHHHHHhCCCeEEEeccCcc
Q 011115 303 IEEVIYHVE---TYDVTT-IRASTPMFLMSRKIKSLGVKMVISGEGSD 346 (493)
Q Consensus 303 l~~~~~~~~---~~~~~~-~~~~~~~~~~~~~a~~~g~~v~ltG~GgD 346 (493)
+...+.... .+...+ .......-.+.+.|++.|++++.+|+.++
T Consensus 73 i~~~i~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~ 120 (394)
T PRK13820 73 IFPAIKANALYEGYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGK 120 (394)
T ss_pred HHHHHHhCccccCCcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 223332211 111111 00011112355667889999999999664
No 84
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=98.46 E-value=6.5e-07 Score=82.25 Aligned_cols=108 Identities=12% Similarity=0.133 Sum_probs=70.8
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC--CC--CcHHHHHHHHHHhCCcceEEEeChhhhHHH
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GS--PDLKYAKEVADYLGTVHHEFHFTVQDGIDA 302 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~--~~--~d~~~A~~va~~lg~~~~~~~~~~~~~~~~ 302 (493)
+|.+++|||.||++++.++.+..... +.++.++++... .. .+.+.++++|+.+|++++.+.++..+....
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~------~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~ 74 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKL------KIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKALAKG 74 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc------CCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchhhccc
Confidence 47899999999999999998754321 246777777543 21 367889999999999999888754321100
Q ss_pred HHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 011115 303 IEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (493)
Q Consensus 303 l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDel 348 (493)
....+. ......-+..+.+.+.+.|++++++|+.+|++
T Consensus 75 ------~~~~~~--~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~ 112 (189)
T TIGR02432 75 ------KKKNLE--EAAREARYDFFEEIAKKHGADYILTAHHADDQ 112 (189)
T ss_pred ------cCCCHH--HHHHHHHHHHHHHHHHHcCCCEEEEcCccHHH
Confidence 000000 00001122345566778899999999999874
No 85
>PRK08349 hypothetical protein; Validated
Probab=98.46 E-value=8.3e-07 Score=82.17 Aligned_cols=110 Identities=16% Similarity=0.160 Sum_probs=65.4
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCCcHHHHHHHHHHhC----CcceE-EEeChhhh-H
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLG----TVHHE-FHFTVQDG-I 300 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~va~~lg----~~~~~-~~~~~~~~-~ 300 (493)
++.+++|||+||++.+.++.+. |.++.++++.. +..+...++++|++++ ++|+. +.++..+. .
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~----------g~~v~av~~d~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 70 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRR----------GVEVYPVHFRQ-DEKKEEKVRELVERLQELHGGKLKDPVVVDAFEEQG 70 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHc----------CCeEEEEEEeC-CHHHHHHHHHHHHHHHHhcCCCcceEEEEcchHHhH
Confidence 4678999999999999988764 35788888876 3456666777776664 77642 33332221 1
Q ss_pred HHHHHHHHhhcccccccc-cchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 011115 301 DAIEEVIYHVETYDVTTI-RASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (493)
Q Consensus 301 ~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~g~~v~ltG~GgDel 348 (493)
..+..+......+. ++. ...+....+.+.|.+.|++.++||+..|+.
T Consensus 71 ~~~~~~~~~~~~~~-~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~ 118 (198)
T PRK08349 71 PVFEKLRELKKEKW-TCIFCKYTMYRKAERIAHEIGASAIITGDSLGQV 118 (198)
T ss_pred HHHHHHHhhCCCCC-chHHHHHHHHHHHHHHHHHcCCCEEEEecCCchH
Confidence 12222111111111 111 111223345667788999999999876653
No 86
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=98.45 E-value=1.3e-06 Score=88.32 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=68.8
Q ss_pred eEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCCc-HHHHHHHHHHhCCc-ceEEEeChhhhHH-HHH
Q 011115 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPD-LKYAKEVADYLGTV-HHEFHFTVQDGID-AIE 304 (493)
Q Consensus 228 v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~d-~~~A~~va~~lg~~-~~~~~~~~~~~~~-~l~ 304 (493)
|.+++|||+||++++.++.+.. +..+.++++......+ .+.|+++|+.+|++ |+++.+. +++.+ .+.
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~---------~~eV~av~~d~Gq~~~~~e~a~~~a~~lG~~~~~viD~~-~ef~~~~i~ 70 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKG---------GYEVIAVTADVGQPEEEIEAIEEKALKLGAKKHVVVDLR-EEFVEDYIF 70 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhC---------CCeEEEEEEECCCcchhHHHHHHHHHHcCCCEEEEeccH-HHHHHHhhH
Confidence 5689999999999999998764 2478999987654433 48999999999996 6665553 23332 233
Q ss_pred HHHHhhccc----cc-ccccchHHHHHHHHHHHhCCCeEEEeccCc
Q 011115 305 EVIYHVETY----DV-TTIRASTPMFLMSRKIKSLGVKMVISGEGS 345 (493)
Q Consensus 305 ~~~~~~~~~----~~-~~~~~~~~~~~~~~~a~~~g~~v~ltG~Gg 345 (493)
..+.....+ .. ..+......-.+.+.|++.|++++.+|..+
T Consensus 71 ~~i~an~~~~g~y~l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~ 116 (385)
T cd01999 71 PAIQANALYEGTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTG 116 (385)
T ss_pred HHHHhCccccCCCcCCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 333322111 11 111111112234567888999999888865
No 87
>PRK13981 NAD synthetase; Provisional
Probab=98.44 E-value=1.6e-06 Score=92.78 Aligned_cols=137 Identities=20% Similarity=0.211 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHhhcc--CcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCC--CcHHHHHHHH
Q 011115 207 PLVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVA 282 (493)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~--~d~~~A~~va 282 (493)
.+++.+.+...+++++.. ...+.+.||||+||+++++++.+.+.. .+++++++....+ .+...|+++|
T Consensus 260 ~~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~--------~~v~~~~~p~~~~~~~~~~~a~~~a 331 (540)
T PRK13981 260 EAEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGA--------ERVRAVMMPSRYTSEESLDDAAALA 331 (540)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCc--------CcEEEEECCCCCCCHHHHHHHHHHH
Confidence 455666666666666644 357889999999999999999887621 3688888875543 4678899999
Q ss_pred HHhCCcceEEEeChhhhHHHHHHHHHhh---cccccc--cccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 011115 283 DYLGTVHHEFHFTVQDGIDAIEEVIYHV---ETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (493)
Q Consensus 283 ~~lg~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~--~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~ 354 (493)
+.+|++|+++.+++ ..+.+...+... +..+.. .+.+.+.+..++..|...|.-|+=||. -+|+.-||-.
T Consensus 332 ~~lgi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~a~~~~~lvlgt~n-~sE~~~Gy~t 405 (540)
T PRK13981 332 KNLGVRYDIIPIEP--AFEAFEAALAPLFAGTEPDITEENLQSRIRGTLLMALSNKFGSLVLTTGN-KSEMAVGYAT 405 (540)
T ss_pred HHcCCeEEEEECHH--HHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhccCCEEEeCCc-cCHHHcCCeE
Confidence 99999999988764 233332222211 111110 111122233445556666665555554 4577788754
No 88
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=98.43 E-value=7.5e-07 Score=86.95 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=71.2
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC--CCCcHHHHHHHHHHhCC-cceEEEeChhhhHHHH
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGT-VHHEFHFTVQDGIDAI 303 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~va~~lg~-~~~~~~~~~~~~~~~l 303 (493)
++.+++|||+||+++++++.+.. |.++.++++... ...|.+.++++|+.++. +|+.+.++. .+.+.+
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~l---------G~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~~e-~fl~~l 70 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAI---------GDRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDASE-RFLSAL 70 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHh---------CCcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcCcH-HHHHHh
Confidence 46799999999999999999864 357888887643 24588899999998886 888877642 222221
Q ss_pred HHHHHhhcccccc-cccchHHHHHHHHHHHhCC-CeEEEeccCcccc
Q 011115 304 EEVIYHVETYDVT-TIRASTPMFLMSRKIKSLG-VKMVISGEGSDEI 348 (493)
Q Consensus 304 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~g-~~v~ltG~GgDel 348 (493)
.. ...+... .+........+.+.|++.| ++.+++|+.+|.+
T Consensus 71 ~~----v~npe~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~ 113 (295)
T cd01997 71 KG----VTDPEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDV 113 (295)
T ss_pred cC----CCCHHHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccch
Confidence 11 1111000 0000111223556678889 9999999999876
No 89
>PLN00200 argininosuccinate synthase; Provisional
Probab=98.42 E-value=1.4e-06 Score=88.13 Aligned_cols=111 Identities=17% Similarity=0.162 Sum_probs=71.3
Q ss_pred cceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCC-CcHHHHHHHHHHhCCcceEEEeChhhhHH-HH
Q 011115 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-PDLKYAKEVADYLGTVHHEFHFTVQDGID-AI 303 (493)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~-~d~~~A~~va~~lg~~~~~~~~~~~~~~~-~l 303 (493)
.+|++++|||+||++++.++.+.. |.++.++++..... .|.+.|+++|+.+|++|+.+.--.+++.+ .+
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~~---------G~eViav~id~Gq~~~el~~a~~~A~~lGi~~~~v~dl~~ef~~~~i 76 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRENY---------GCEVVCFTADVGQGIEELEGLEAKAKASGAKQLVVKDLREEFVRDYI 76 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhh---------CCeEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhhc
Confidence 479999999999999999997753 35788998876543 58899999999999987555422333332 22
Q ss_pred HHHHHhhcccccc-cccch----HHHHHHHHHHHhCCCeEEEeccCc
Q 011115 304 EEVIYHVETYDVT-TIRAS----TPMFLMSRKIKSLGVKMVISGEGS 345 (493)
Q Consensus 304 ~~~~~~~~~~~~~-~~~~~----~~~~~~~~~a~~~g~~v~ltG~Gg 345 (493)
...+.....+... .+..+ ...-.+.+.|++.|++++.+|..|
T Consensus 77 ~p~i~~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tg 123 (404)
T PLN00200 77 FPCLRANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATG 123 (404)
T ss_pred CHHHHcCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcC
Confidence 2222211111100 01111 112345667888999999888766
No 90
>PRK00074 guaA GMP synthase; Reviewed
Probab=98.40 E-value=2.2e-06 Score=90.48 Aligned_cols=126 Identities=18% Similarity=0.190 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC--CCCcHHHHHH-HHHH
Q 011115 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKE-VADY 284 (493)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~-va~~ 284 (493)
+.+.+...+.+++.+.. .++.+++|||+||+++++++.+.. |.++.++++... ..+|...+.+ +|+.
T Consensus 199 ~~~~~~~~~~l~~~v~~-~~vlva~SGGvDS~vll~ll~~~l---------g~~v~av~vd~g~~~~~e~~~~~~~~a~~ 268 (511)
T PRK00074 199 ENFIEEAIEEIREQVGD-KKVILGLSGGVDSSVAAVLLHKAI---------GDQLTCVFVDHGLLRKNEAEQVMEMFREH 268 (511)
T ss_pred HHHHHHHHHHHHHhcCC-CcEEEEeCCCccHHHHHHHHHHHh---------CCceEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34444455566666654 689999999999999999998875 357888887543 2346666665 7799
Q ss_pred hCCcceEEEeChhhhHHHHHHHHHhhcccccc-cccchHHHHHHHHHHHhC-CCeEEEeccCcccc
Q 011115 285 LGTVHHEFHFTVQDGIDAIEEVIYHVETYDVT-TIRASTPMFLMSRKIKSL-GVKMVISGEGSDEI 348 (493)
Q Consensus 285 lg~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~-g~~v~ltG~GgDel 348 (493)
+|++|+.+.++.. +.+.+.. ...+... .+........+.+.|++. |++.++||+..|.+
T Consensus 269 lgi~~~vvd~~~~-f~~~l~g----~~~~~~~r~~~~~~~~~~~~~~a~~~~g~~~latGhn~dD~ 329 (511)
T PRK00074 269 FGLNLIHVDASDR-FLSALAG----VTDPEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTLYPDV 329 (511)
T ss_pred cCCcEEEEccHHH-HHHhccC----CCCcHHhhhhhhHHHHHHHHHHHHHccCCCEEEECCCcchh
Confidence 9999998876522 2222111 0111100 011111123445667777 99999999987765
No 91
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=98.38 E-value=1.7e-06 Score=71.14 Aligned_cols=76 Identities=29% Similarity=0.296 Sum_probs=57.5
Q ss_pred eEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCCcHHHHHHHHHHhCCcceEEEeChhhhHHHHHHHH
Q 011115 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVI 307 (493)
Q Consensus 228 v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~ 307 (493)
+.+++|||.||++++.++.+.. .++.++++.....+|...+++.++.
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG----------YQVIAVTVDHGISPRLEDAKEIAKE----------------------- 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC----------CCEEEEEEcCCCcccHHHHHHHHHH-----------------------
Confidence 4689999999999999998763 4677888766544567777777766
Q ss_pred HhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCcccccc
Q 011115 308 YHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFG 350 (493)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfg 350 (493)
.....+.+.+++.|++.+++|+..|.+..
T Consensus 48 --------------~r~~~~~~~a~~~g~~~i~~g~~~~D~~~ 76 (103)
T cd01986 48 --------------AREEAAKRIAKEKGAETIATGTRRDDVAN 76 (103)
T ss_pred --------------HHHHHHHHHHHHcCCCEEEEcCCcchHHH
Confidence 12334556677889999999999998644
No 92
>PRK00768 nadE NAD synthetase; Reviewed
Probab=98.37 E-value=3.6e-06 Score=80.47 Aligned_cols=142 Identities=14% Similarity=0.091 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhhcc--CcceEEEecCCcchhHHHHHHHHHhccccccc-ccCCcceeeeeccCCCCcHHHHHHHHHHhC
Q 011115 210 LRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAAR-QWGTQLHSFCVGLEGSPDLKYAKEVADYLG 286 (493)
Q Consensus 210 l~~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~-~~~~~~~~~t~~~~~~~d~~~A~~va~~lg 286 (493)
..+.+.+.++.+++. ...+.+.||||+||+++++++.+.....+..+ .....+.++...+....+...|+.+|+.+|
T Consensus 21 ~~~~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~~~~~~da~~la~~lg 100 (268)
T PRK00768 21 EIRRRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGVQADEDDAQDALAFIQ 100 (268)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCCcCCHHHHHHHHHhcC
Confidence 334444555555433 34577999999999999999888764321000 000124444544433456889999999999
Q ss_pred C-cceEEEeChhhhHHHHHHHHHhhcc-ccc---ccccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 011115 287 T-VHHEFHFTVQDGIDAIEEVIYHVET-YDV---TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (493)
Q Consensus 287 ~-~~~~~~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~ 354 (493)
+ +|.++.+++ ..+.+.+.+..... ... ..+.+-+.+-.++..|...|.-|+=|| .-+|+.-||..
T Consensus 101 i~~~~~i~I~~--~~~~~~~~l~~~~~~~~~~a~~NiqARlRm~~Ly~~An~~~~lvlgT~-N~sE~~~Gy~T 170 (268)
T PRK00768 101 PDRVLTVNIKP--AVDASVAALEAAGIELSDFVKGNIKARERMIAQYAIAGATGGLVVGTD-HAAEAVTGFFT 170 (268)
T ss_pred CCeeEEEECHH--HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHccCCCEEEcCC-cccHHHhCcee
Confidence 9 788887754 33443332221000 000 011111223344445555665444444 46678888854
No 93
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.36 E-value=1.9e-06 Score=85.16 Aligned_cols=124 Identities=17% Similarity=0.186 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeec--cCC--CCcHHHHHHHHHHh
Q 011115 210 LRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEG--SPDLKYAKEVADYL 285 (493)
Q Consensus 210 l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~--~~~--~~d~~~A~~va~~l 285 (493)
+...+.++++....-+.+|.|++|||.||++++.++.+.... ..+.++++. +.. ..+...++.+|+.+
T Consensus 6 ~~~~v~~~i~~~~~~~~~ilVavSGGkDS~~ll~~L~~l~~~--------~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~ 77 (298)
T COG0037 6 LERKVKRAIREFNLIEYKILVAVSGGKDSLALLHLLKELGRR--------IEVEAVHVDHGLRGYSDQEAELVEKLCEKL 77 (298)
T ss_pred HHHHHHHHHHhccccCCeEEEEeCCChHHHHHHHHHHHhccC--------ceEEEEEecCCCCCccchHHHHHHHHHHHh
Confidence 344444444442211568999999999999999999987521 256666653 433 35678889999999
Q ss_pred CCcceEEEeChhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 011115 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (493)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDel 348 (493)
++++....++........+ ...+. ..........+.+.|.+.|+++++||+.+|..
T Consensus 78 ~~~~~v~~~~~~~~~~~~~-----~~~~c--~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~ 133 (298)
T COG0037 78 GIPLIVERVTDDLGRETLD-----GKSIC--AACRRLRRGLLYKIAKELGADKIATGHHLDDQ 133 (298)
T ss_pred CCceEEEEEEeeccccccC-----CCChh--HHHHHHHHHHHHHHHHHcCCCeEEeccCcHHH
Confidence 9988877765432211110 00000 11112234467788889999999999999974
No 94
>PLN02347 GMP synthetase
Probab=98.33 E-value=2.5e-06 Score=89.96 Aligned_cols=123 Identities=15% Similarity=0.184 Sum_probs=77.1
Q ss_pred HHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeecc--CCCCcHHHH-HHHHHHhCCcce
Q 011115 214 FENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYA-KEVADYLGTVHH 290 (493)
Q Consensus 214 l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~--~~~~d~~~A-~~va~~lg~~~~ 290 (493)
..+.+++.+..+.++.++||||+||+++|+++++.+ |.++.++++.. ....|...+ +.+|+++|++|+
T Consensus 218 ~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~al---------G~~v~av~id~g~~~~~E~~~~~~~~a~~lgi~~~ 288 (536)
T PLN02347 218 QIELIKATVGPDEHVICALSGGVDSTVAATLVHKAI---------GDRLHCVFVDNGLLRYKEQERVMETFKRDLHLPVT 288 (536)
T ss_pred HHHHHHHHhccCCeEEEEecCChhHHHHHHHHHHHh---------CCcEEEEEEeCCCCChhHHHHHHHHHHHHcCCcEE
Confidence 335555667767889999999999999999999965 45788888863 334466665 779999999999
Q ss_pred EEEeChhhhHHHHHHHHHhhcccccccccch--HHHH-HHH-HHHHhCC--CeEEEeccCccccc
Q 011115 291 EFHFTVQDGIDAIEEVIYHVETYDVTTIRAS--TPMF-LMS-RKIKSLG--VKMVISGEGSDEIF 349 (493)
Q Consensus 291 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~-~~~-~~a~~~g--~~v~ltG~GgDelf 349 (493)
.+.+++ .+++.++.+. ++.+-.-+... +..+ .+. +.+.+.| ++.++.|...|.+.
T Consensus 289 vvd~~e-~fl~~l~~~~---~pe~k~~~~~~~f~~~f~~~~~~~~~~~~~~~~~l~qGt~~~D~~ 349 (536)
T PLN02347 289 CVDASE-RFLSKLKGVT---DPEKKRKIIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVI 349 (536)
T ss_pred EEeCcH-HHHhhCCCCC---ChHHhcchhCchHHHHHHHHHHHHHHhhCCCCcEEccCCcccccc
Confidence 988763 3344332221 11110000001 1112 122 2222334 48899999888776
No 95
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=3.9e-06 Score=79.47 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=79.3
Q ss_pred cceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeecc----C-------CCCcHHHHHHHHHHhCCcceEEEe
Q 011115 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL----E-------GSPDLKYAKEVADYLGTVHHEFHF 294 (493)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~----~-------~~~d~~~A~~va~~lg~~~~~~~~ 294 (493)
.+|.|++|||+||++-|.++++.+ .++..+-+.- + ...|.+.|+.||++++++.+.+++
T Consensus 6 ~~VvvamSgGVDSsVaa~Ll~~~g----------~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf 75 (377)
T KOG2805|consen 6 DRVVVAMSGGVDSSVAARLLAARG----------YNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVNF 75 (377)
T ss_pred ceEEEEecCCchHHHHHHHHHhcC----------CCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEee
Confidence 468999999999999999988764 5666655421 1 125889999999999999999999
Q ss_pred ChhhhHHHHHHHHHh---hcccccccccchHHHHH-HHHHHH-hCCCeEEEeccCccccccCCc
Q 011115 295 TVQDGIDAIEEVIYH---VETYDVTTIRASTPMFL-MSRKIK-SLGVKMVISGEGSDEIFGGYL 353 (493)
Q Consensus 295 ~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~-~~~~a~-~~g~~v~ltG~GgDelfgGy~ 353 (493)
..+.+.+.+...+.. ..+|++....+-.-.|- +.+.|. ..|.+-+.||+.|-.+++-+.
T Consensus 76 ~kEYW~~Vfs~~L~~Y~~G~TPNPDI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~ 139 (377)
T KOG2805|consen 76 VKEYWNDVFSPFLEEYENGRTPNPDILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVLEDED 139 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCccccceeeccHHHHHHHHhcCCCeEEeeeeeeeecCccc
Confidence 877666655555432 22343322222211122 233333 457889999999987776554
No 96
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=98.29 E-value=2e-06 Score=78.63 Aligned_cols=105 Identities=13% Similarity=0.158 Sum_probs=68.2
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC--CC--CcHHHHHHHHHHhCCcceEEEeChhhhHHH
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GS--PDLKYAKEVADYLGTVHHEFHFTVQDGIDA 302 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~--~~--~d~~~A~~va~~lg~~~~~~~~~~~~~~~~ 302 (493)
+|.+++|||.||++++.++.+..... +.++.++++... .. .+...++++|+.+|++++.+......
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~------~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---- 70 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRL------GLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALAP---- 70 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc------CCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeecccc----
Confidence 47899999999999999998865321 236888887643 22 46788999999999998876211000
Q ss_pred HHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 011115 303 IEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (493)
Q Consensus 303 l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDel 348 (493)
..........-..-...+.+.|.+.|++.+++|+-+|++
T Consensus 71 -------~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~ 109 (185)
T cd01992 71 -------KPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQ 109 (185)
T ss_pred -------CCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHH
Confidence 000000000001122345667788999999999999874
No 97
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.28 E-value=3.4e-06 Score=86.32 Aligned_cols=109 Identities=17% Similarity=0.238 Sum_probs=70.4
Q ss_pred ccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeec---cCCCCcHHHHHHHHHHhC-----CcceEEEe
Q 011115 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG---LEGSPDLKYAKEVADYLG-----TVHHEFHF 294 (493)
Q Consensus 223 ~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~---~~~~~d~~~A~~va~~lg-----~~~~~~~~ 294 (493)
.+++++.++||||+||+++++++.+. |.++.++++. +....+...++++|+.++ ++|+.+++
T Consensus 174 g~~gkvvvllSGGiDS~vaa~l~~k~----------G~~v~av~~~~~~~~~~~~~~~~~~~a~~l~~~~~~i~~~vv~~ 243 (394)
T PRK01565 174 GTSGKALLLLSGGIDSPVAGYLAMKR----------GVEIEAVHFHSPPYTSERAKEKVIDLARILAKYGGRIKLHVVPF 243 (394)
T ss_pred CCCCCEEEEECCChhHHHHHHHHHHC----------CCEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 35678899999999999999998774 3567777763 223346677888888874 88888887
Q ss_pred ChhhhHHHHHHHHHhhcccc-cccccc-hHHHHHHHHHHHhCCCeEEEeccCcccc
Q 011115 295 TVQDGIDAIEEVIYHVETYD-VTTIRA-STPMFLMSRKIKSLGVKMVISGEGSDEI 348 (493)
Q Consensus 295 ~~~~~~~~l~~~~~~~~~~~-~~~~~~-~~~~~~~~~~a~~~g~~v~ltG~GgDel 348 (493)
++.. ..+.. ..+. ...+.. ...+-.+...|.+.|+.+++||+..|++
T Consensus 244 ~~~~--~~i~~-----~~~~~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~ 292 (394)
T PRK01565 244 TEIQ--EEIKK-----KVPESYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQV 292 (394)
T ss_pred HHHH--HHHhh-----cCCCceEEEeHHHHHHHHHHHHHHHcCCCEEEEccccccc
Confidence 5421 22211 1111 011111 1122234566778999999999998775
No 98
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=98.26 E-value=4.5e-06 Score=84.64 Aligned_cols=108 Identities=17% Similarity=0.145 Sum_probs=69.1
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC-CCcHHHHHHHHHHhCC-cceEEEeChhhhHHH-H
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPDLKYAKEVADYLGT-VHHEFHFTVQDGIDA-I 303 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~-~~d~~~A~~va~~lg~-~~~~~~~~~~~~~~~-l 303 (493)
+|.+++|||+||++++.++.+. |.++.++++.... ..|.+.+++.|+.+|+ +|+.+.+.. ++.+. .
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----------g~~V~av~id~Gq~~~e~~~a~~~a~~lGi~~~~viD~~~-ef~~~~~ 69 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----------GYEVIAYTADVGQPEEDIDAIPEKALEYGAENHYTIDARE-EFVKDYG 69 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----------CCEEEEEEEecCCChHHHHHHHHHHHHhCCCeEEEEeCHH-HHHHhhc
Confidence 4789999999999999998865 2578888886543 3588899999999997 687776642 33332 1
Q ss_pred HHHHHhhccccc-ccccchHHHH----HHHHHHHhCCCeEEEeccCc
Q 011115 304 EEVIYHVETYDV-TTIRASTPMF----LMSRKIKSLGVKMVISGEGS 345 (493)
Q Consensus 304 ~~~~~~~~~~~~-~~~~~~~~~~----~~~~~a~~~g~~v~ltG~Gg 345 (493)
-..+.....+.. ..+..++... .+.+.|++.|++++.+|.-+
T Consensus 70 ~~~i~~n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~ 116 (394)
T TIGR00032 70 FAAIQANAFYEGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTG 116 (394)
T ss_pred hhhhcCCccccCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccC
Confidence 111111111110 0011112222 34566788999999999855
No 99
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=98.23 E-value=2.9e-06 Score=77.45 Aligned_cols=104 Identities=16% Similarity=0.177 Sum_probs=61.5
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeecc--CCC--CcHHHHHHHHHHhCCcceEEEeChhhhHHH
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGS--PDLKYAKEVADYLGTVHHEFHFTVQDGIDA 302 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~--~~~--~d~~~A~~va~~lg~~~~~~~~~~~~~~~~ 302 (493)
+|.|++|||.||.+++.++.+..... +.++.++++.. ... .+....+++|+.+|++++...++...
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~------~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~~~---- 70 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRN------GIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDEDR---- 70 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTT------TTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--CHC----
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhc------CCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeeeee----
Confidence 47899999999999999999875432 24677777653 322 35678899999999999988775300
Q ss_pred HHHHHHhhcccccccccchHHHH-HHHHHHHhCCCeEEEeccCcccc
Q 011115 303 IEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 348 (493)
Q Consensus 303 l~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~g~~v~ltG~GgDel 348 (493)
..............| .+.+.|.+.|++++++|+-.|..
T Consensus 71 --------~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~ 109 (182)
T PF01171_consen 71 --------KKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQ 109 (182)
T ss_dssp --------CTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHH
T ss_pred --------cccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCcc
Confidence 000000000111122 55677888999999999999874
No 100
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=98.19 E-value=9.3e-06 Score=81.98 Aligned_cols=112 Identities=20% Similarity=0.228 Sum_probs=69.3
Q ss_pred ccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCCcHHHHHHHHHHhCCcce-----EEEeChh
Q 011115 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHH-----EFHFTVQ 297 (493)
Q Consensus 223 ~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~va~~lg~~~~-----~~~~~~~ 297 (493)
.+.+++.+++|||+||++.+.++.+.+ ..+.++++... ..+.+.++++|+.++..+. .+.++..
T Consensus 178 Gs~gkvlvllSGGiDSpVAa~ll~krG----------~~V~~v~f~~g-~~~~e~v~~la~~L~~~~~~~~i~l~~v~~~ 246 (381)
T PRK08384 178 GTQGKVVALLSGGIDSPVAAFLMMKRG----------VEVIPVHIYMG-EKTLEKVRKIWNQLKKYHYGGKAELIVVKPQ 246 (381)
T ss_pred CCCCcEEEEEeCChHHHHHHHHHHHcC----------CeEEEEEEEeC-HHHHHHHHHHHHHhcccccCCcceEEEEChH
Confidence 356789999999999999999998863 67887777432 3456788899999885422 2223222
Q ss_pred ---hhHHHHHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 011115 298 ---DGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (493)
Q Consensus 298 ---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDel 348 (493)
++...+.+.. .+.+. ..+....-+..+.+.|.+.|++.++||+..|.+
T Consensus 247 ~~~~v~~~i~~~~--~~~~~-C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqv 297 (381)
T PRK08384 247 ERERIIQKLKELK--KENYT-CVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQV 297 (381)
T ss_pred HHHHHHHHHHHhc--cCCCc-hHHHHHHHHHHHHHHHHHcCCCEEEEcccchhH
Confidence 1222222211 11110 111111222345566788999999999987764
No 101
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=98.16 E-value=5.9e-06 Score=83.89 Aligned_cols=112 Identities=21% Similarity=0.244 Sum_probs=68.8
Q ss_pred ccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC---CCcHHHHHHHHHHhC---CcceEEEeCh
Q 011115 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---SPDLKYAKEVADYLG---TVHHEFHFTV 296 (493)
Q Consensus 223 ~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~---~~d~~~A~~va~~lg---~~~~~~~~~~ 296 (493)
.++.++.+++|||+||++.++++.+. |.++.++++.... ..+...++.+|+.++ .+.+.+.++.
T Consensus 170 g~~~kvlvllSGGiDS~vaa~ll~kr----------G~~V~av~~~~~~~~~~~~~~~v~~l~~~l~~~~~~~~l~~v~~ 239 (371)
T TIGR00342 170 GTQGKVLALLSGGIDSPVAAFMMMKR----------GCRVVAVHFFNEPAASEKAREKVERLANSLNETGGSVKLYVFDF 239 (371)
T ss_pred CcCCeEEEEecCCchHHHHHHHHHHc----------CCeEEEEEEeCCCCccHHHHHHHHHHHHHHhhcCCCceEEEEeC
Confidence 35677899999999999999999775 3578777776432 245678889999884 3223333332
Q ss_pred hhhHHHHHHHHHhhcccccccccchHHHH-HHHHHHHhCCCeEEEeccCcccc
Q 011115 297 QDGIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 348 (493)
Q Consensus 297 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~g~~v~ltG~GgDel 348 (493)
.+... +......+.. .++..--.++ .+.+.|.+.|++.++||+..|++
T Consensus 240 ~~~~~---~i~~~~~~~~-~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~ 288 (371)
T TIGR00342 240 TDVQE---EIIHIIPEGY-TCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQV 288 (371)
T ss_pred HHHHH---HHHhcCCCCc-eeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhh
Confidence 33222 2221111111 1111111222 34566788999999999998874
No 102
>PRK02628 nadE NAD synthetase; Reviewed
Probab=98.15 E-value=1.6e-05 Score=86.99 Aligned_cols=144 Identities=15% Similarity=0.108 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHhhcc--CcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCC--cHHHHHHHH
Q 011115 207 PLVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP--DLKYAKEVA 282 (493)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~--d~~~A~~va 282 (493)
.+++.+.+...++++++. ...+.+.||||+||+++++++.+....-+. ...++.++++...++. ....|+++|
T Consensus 341 ~~~~~~~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~~~a~~~lg~---~~~~v~~v~mp~~~ss~~s~~~a~~la 417 (679)
T PRK02628 341 CYEAYNIQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVAAKAMDRLGL---PRKNILAYTMPGFATTDRTKNNAVALM 417 (679)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHhhCC---CcceEEEEECCCCCCCHHHHHHHHHHH
Confidence 355666666677776643 467889999999999999998887421100 0046888887433343 457899999
Q ss_pred HHhCCcceEEEeChhhhHHHHHHHHHhh-c---cccccc---ccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccc
Q 011115 283 DYLGTVHHEFHFTVQDGIDAIEEVIYHV-E---TYDVTT---IRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (493)
Q Consensus 283 ~~lg~~~~~~~~~~~~~~~~l~~~~~~~-~---~~~~~~---~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~~ 355 (493)
+.+|++|+++.+.+ ..+...+.+... . .....+ +.+-+.+..+...|.+.|.-|+-|| .-.|+.-||..+
T Consensus 418 ~~LGi~~~~i~I~~--~~~~~~~~l~~~~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tg-n~sE~~~Gy~T~ 494 (679)
T PRK02628 418 KALGVTAREIDIRP--AALQMLKDIGHPFARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTG-DLSELALGWCTY 494 (679)
T ss_pred HHhCCeEEEEEcHH--HHHHHHHHhccccccCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCC-chhhHHhCceec
Confidence 99999999998843 233222222111 0 000001 1222344567777888899888898 455777787654
Q ss_pred c
Q 011115 356 H 356 (493)
Q Consensus 356 ~ 356 (493)
.
T Consensus 495 ~ 495 (679)
T PRK02628 495 G 495 (679)
T ss_pred C
Confidence 3
No 103
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=98.13 E-value=1.1e-05 Score=72.63 Aligned_cols=87 Identities=22% Similarity=0.272 Sum_probs=61.2
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC--CCCcHHHHHHHHHHhCCcceEEEeChhhhHHHHH
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~ 304 (493)
++.+++|||+||++++.++.+.. .++.++++.+. ...|.+.++++++.+| ++..+...
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~--------- 60 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKEG----------YEVHALSFDYGQRHAKEEEAAKLIAEKLG-PSTYVPAR--------- 60 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHcC----------CcEEEEEEECCCCChhHHHHHHHHHHHHC-CCEEEeCc---------
Confidence 47899999999999999988752 46778887653 2346688999999999 33322110
Q ss_pred HHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 011115 305 EVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (493)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDel 348 (493)
.....-.+.+.|.+.|++.+++|+..|+.
T Consensus 61 ---------------~~~~~~~l~~~a~~~g~~~i~~G~~~~d~ 89 (169)
T cd01995 61 ---------------NLIFLSIAAAYAEALGAEAIIIGVNAEDY 89 (169)
T ss_pred ---------------CHHHHHHHHHHHHHCCCCEEEEeeccCcc
Confidence 00011134555678899999999999885
No 104
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=1.1e-05 Score=69.06 Aligned_cols=62 Identities=32% Similarity=0.334 Sum_probs=52.1
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCCcHHHHHHHHHHhCCcceEEEeChhh
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQD 298 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~ 298 (493)
.+++++|||-|||+-|.++.+.+ -.++.+|+.|.--+..++|++.|+.+|.+|..+.++.+-
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~klg----------yev~LVTvnFGv~d~~k~A~~tA~~lgF~h~vl~Ldr~i 63 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKLG----------YEVELVTVNFGVLDSWKYARETAAILGFPHEVLQLDREI 63 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHhC----------CCcEEEEEEeccccchhhHHHHHHHhCCCcceeccCHHH
Confidence 47899999999999999998874 466666766666688899999999999999999987543
No 105
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.09 E-value=2.1e-05 Score=72.32 Aligned_cols=92 Identities=18% Similarity=0.169 Sum_probs=62.1
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC--------CCcHHHHHHHHHHhCCcceEEEeChhh
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--------SPDLKYAKEVADYLGTVHHEFHFTVQD 298 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~--------~~d~~~A~~va~~lg~~~~~~~~~~~~ 298 (493)
++.+++|||.||++.+.++.+.. ..+.+++...+. ..+.+.++++|+.+|++|..+.++...
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~G----------~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~ 70 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEEG----------HEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEE 70 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHcC----------CEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCc
Confidence 46799999999999999988753 466665543221 137789999999999999988864311
Q ss_pred hHHHHHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 011115 299 GIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (493)
Q Consensus 299 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDe 347 (493)
-+.. -.++...+.+++.|++++++|.-.++
T Consensus 71 -e~~~------------------~~l~~~l~~~~~~g~~~vv~G~i~sd 100 (194)
T cd01994 71 -EDEV------------------EDLKELLRKLKEEGVDAVVFGAILSE 100 (194)
T ss_pred -hHHH------------------HHHHHHHHHHHHcCCCEEEECccccH
Confidence 1111 11222233333348999999988876
No 106
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=98.05 E-value=2.4e-05 Score=73.33 Aligned_cols=89 Identities=19% Similarity=0.237 Sum_probs=59.7
Q ss_pred EEecCCcchhHHHHHHHHHhcccccccccCCcce-eeeeccC-------CCCcHHHHHHHHHHhCCcceEEEeChhhhHH
Q 011115 230 VLLSGGLDSSLVASITARHLAGTKAARQWGTQLH-SFCVGLE-------GSPDLKYAKEVADYLGTVHHEFHFTVQDGID 301 (493)
Q Consensus 230 v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~-~~t~~~~-------~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~ 301 (493)
+++|||+||++.+..|.+.. ..+. .+++..+ ...+.+.++++|+.+|++|+.+.++... ..
T Consensus 2 vl~SGGkDS~~al~~a~~~G----------~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~-~~ 70 (218)
T TIGR03679 2 ALYSGGKDSNYALYKALEEG----------HEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEK-EK 70 (218)
T ss_pred eeecCcHHHHHHHHHHHHcC----------CEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCC-hH
Confidence 68999999999999888743 4554 3343322 2347889999999999999988875210 00
Q ss_pred HHHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 011115 302 AIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (493)
Q Consensus 302 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDe 347 (493)
..+ .++.+.+.+++.|++.+++|.-.++
T Consensus 71 ~~~------------------~l~~~l~~~~~~g~~~vv~G~i~sd 98 (218)
T TIGR03679 71 EVE------------------DLKGALKELKREGVEGIVTGAIASR 98 (218)
T ss_pred HHH------------------HHHHHHHHHHHcCCCEEEECCcccH
Confidence 000 1333334445559999999988763
No 107
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=98.01 E-value=1.9e-05 Score=70.78 Aligned_cols=115 Identities=18% Similarity=0.135 Sum_probs=67.8
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeecc--CCCCcHHHHHHHHHHhCCcceEEEeChhhhHHHHH
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~--~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~ 304 (493)
++.+.+|||.||++++.++.+..... .++..+++.. +.....++++++++.+|++++.+......... ..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-------~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~ 72 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-------KPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVRPPDSPAEG-LA 72 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-------cCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEECCCccHHHH-HH
Confidence 47899999999999999998865210 1566666543 22235678999999999998887665332111 00
Q ss_pred HHHHhhcccccccccch---HHHHHHHHHHHhCCCeEEEeccCcccccc
Q 011115 305 EVIYHVETYDVTTIRAS---TPMFLMSRKIKSLGVKMVISGEGSDEIFG 350 (493)
Q Consensus 305 ~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~g~~v~ltG~GgDelfg 350 (493)
.... ............ .-.-.+.+.+++.+..++++|.-+||...
T Consensus 73 ~~~~-~~~~~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~~ 120 (173)
T cd01713 73 LGLK-GFPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESAR 120 (173)
T ss_pred Hhhh-ccCCccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccchh
Confidence 0011 011110000000 00112334455568899999999999643
No 108
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=97.98 E-value=3.4e-05 Score=81.14 Aligned_cols=111 Identities=18% Similarity=0.261 Sum_probs=68.2
Q ss_pred cCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCC----CcHHHHHHHHHHhCCcce--EEEeChh
Q 011115 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS----PDLKYAKEVADYLGTVHH--EFHFTVQ 297 (493)
Q Consensus 224 ~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~----~d~~~A~~va~~lg~~~~--~~~~~~~ 297 (493)
+.+++.++||||+||++.++++.+.. ..+.++++.+... .+.+.++.+++.++..|. .+.++-.
T Consensus 176 ~~gk~lvllSGGiDS~va~~~~~krG----------~~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~~~~l~~v~~~ 245 (482)
T PRK01269 176 TQEDVLSLISGGFDSGVASYMLMRRG----------SRVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSHRVRFISVDFE 245 (482)
T ss_pred ccCeEEEEEcCCchHHHHHHHHHHcC----------CEEEEEEEecCCchhHHHHHHHHHHHHHHhCccCCceEEEEecH
Confidence 45678899999999999999887753 5778777654322 257788899988886555 3444322
Q ss_pred hhHHHHHHHHHhhccccccc-ccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 011115 298 DGIDAIEEVIYHVETYDVTT-IRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (493)
Q Consensus 298 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~g~~v~ltG~GgDel 348 (493)
+... ++.... ...... +..-..+-.+.+.|.+.|++.++||+..|++
T Consensus 246 ~~~~---~i~~~~-~~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dv 293 (482)
T PRK01269 246 PVVG---EILEKV-DDGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQV 293 (482)
T ss_pred HHHH---HHHhcC-CCceecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhh
Confidence 2222 222111 111001 0001111123566778999999999998875
No 109
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=97.98 E-value=8.1e-05 Score=72.95 Aligned_cols=108 Identities=16% Similarity=0.172 Sum_probs=67.7
Q ss_pred cceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC-CCCc-HHHHHHHHHHhCCcceEEEeChhhhHHHH
Q 011115 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (493)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~-~~~d-~~~A~~va~~lg~~~~~~~~~~~~~~~~l 303 (493)
.++++++|||.||++++.++.+..... +.++..+++... ..+| .+++.++|+.+|++++.+... +.+
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~------~~~~~vl~iDTG~~FpEt~ef~d~~a~~~gl~l~v~~~~--~~i--- 96 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPG------KLPFPLLHVDTGWKFPEMIEFRDRRAKELGLELIVHSNP--EGI--- 96 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhccc------CCCeeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCh--HHH---
Confidence 568899999999999999998875321 135666666432 1233 578999999999998776532 111
Q ss_pred HHHHHhhcccccc-c-ccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 011115 304 EEVIYHVETYDVT-T-IRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (493)
Q Consensus 304 ~~~~~~~~~~~~~-~-~~~~~~~~~~~~~a~~~g~~v~ltG~GgDe 347 (493)
......+... . .+...-...+.+.+++.|++++++|.-.||
T Consensus 97 ---~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE 139 (301)
T PRK05253 97 ---ARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDE 139 (301)
T ss_pred ---hcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccch
Confidence 1111111100 0 011111234556677789999999999998
No 110
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=97.90 E-value=0.00014 Score=69.55 Aligned_cols=140 Identities=20% Similarity=0.221 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHhhcc--CcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC--CCCcHHHHHHHHH
Q 011115 208 LVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVAD 283 (493)
Q Consensus 208 ~~l~~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~va~ 283 (493)
++..+.+..-+++++.. ...+.+-+|||+||++++++|.+.+.+. . .-..+.++...+. ...+..-|+.+++
T Consensus 6 ~~~~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La~~A~~~~-~---~~~~~~av~mP~~~~~~~~~~da~~~~~ 81 (268)
T COG0171 6 EEEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGKG-D---SKENVLAVRLPYGYTVQADEEDAQDLAE 81 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHHHHHhccc-c---chhheeeEECCCCCccccCHHHHHHHHH
Confidence 33444444555555542 3457789999999999999999887420 0 0024777777766 4468889999999
Q ss_pred HhCCcceEEEeChhhhHHHH-HHHHHhhcc-----cccccccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 011115 284 YLGTVHHEFHFTVQDGIDAI-EEVIYHVET-----YDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (493)
Q Consensus 284 ~lg~~~~~~~~~~~~~~~~l-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~ 354 (493)
.+|+...++.+++ ..+.+ ..+...... .....+.+-..+-.++..|.+.|. +|+.-...+|+.-||-.
T Consensus 82 ~lg~~~~~i~I~~--~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An~~~~-lVlGTgn~sE~~~Gy~T 155 (268)
T COG0171 82 ALGIDYKEINIKP--AVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVILYAIANKLGG-LVLGTGNKSELALGYFT 155 (268)
T ss_pred HhCCceEEEecHH--HHHHHHHhhhhhhcccchhhHHHhhhhHHHHHHHHHHHHhhcCC-EEEcCCcHHHHhcCcee
Confidence 9999977777653 23332 221211111 111111122334444555555554 44444457788888853
No 111
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=97.89 E-value=0.00048 Score=65.51 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=34.5
Q ss_pred CEEEEEeeeeecCCC--CCCCCceeC--CCcEEEEEeeEEcChHHH
Q 011115 43 DFYLAHQRLAIIDPA--SGDQPLYNE--DKKIVVTVNGEIYNHEAL 84 (493)
Q Consensus 43 ~~~l~h~rl~~~~~~--~~~qP~~~~--~~~~~~~~nG~i~n~~el 84 (493)
..+++|.|.|+.|.- .++||+..+ ...++++|||.|.+++.+
T Consensus 71 ~~viaHvR~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~~ 116 (252)
T COG0121 71 ELVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLL 116 (252)
T ss_pred cEEEEEEeccCCCcccccCCCCccccCCccceEEEecCcccCcccc
Confidence 488999999999842 589999864 345799999999999873
No 112
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=97.88 E-value=7.1e-05 Score=77.62 Aligned_cols=78 Identities=18% Similarity=0.173 Sum_probs=56.2
Q ss_pred HHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC--C-CC-cHHHHHHHHHHhCCcc
Q 011115 214 FENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--G-SP-DLKYAKEVADYLGTVH 289 (493)
Q Consensus 214 l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~--~-~~-d~~~A~~va~~lg~~~ 289 (493)
+.+.+...+....++.+++|||.||++++.++.+..... .+.++.++++.+. . ++ +..+++.+|+.+|+++
T Consensus 4 ~~~~l~~~l~~~~~ilvavSGG~DS~~Ll~~l~~~~~~~-----~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~ 78 (436)
T PRK10660 4 LTLTLNRQLLTSRQILVAFSGGLDSTVLLHLLVQWRTEN-----PGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPL 78 (436)
T ss_pred HHHHHHHhcCCCCeEEEEecCCHHHHHHHHHHHHHHHhc-----CCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcE
Confidence 334555667777889999999999999999887643111 1346777777543 2 22 3478899999999999
Q ss_pred eEEEeCh
Q 011115 290 HEFHFTV 296 (493)
Q Consensus 290 ~~~~~~~ 296 (493)
+...++.
T Consensus 79 ~~~~~~~ 85 (436)
T PRK10660 79 VVERVQL 85 (436)
T ss_pred EEEEEec
Confidence 9887653
No 113
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=97.83 E-value=9.2e-05 Score=66.58 Aligned_cols=127 Identities=21% Similarity=0.154 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhhcc----------CcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCCcHHHH
Q 011115 209 VLRQAFENAVIKRLMT----------DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYA 278 (493)
Q Consensus 209 ~l~~~l~~aV~~rl~~----------~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A 278 (493)
+..+.+.+.+..||.. +.+++|++|||.|||+.+-++....- .+.--|+-.++ .=...+
T Consensus 34 e~~~rl~e~l~~RL~g~~ef~r~~id~~kiaVA~SGG~DSsas~iilR~~g~----------~v~p~t~~Lp~-~ir~n~ 102 (255)
T COG1365 34 EVYERLRELLKKRLEGEKEFERIKIDKPKIAVAYSGGVDSSASAIILRWAGF----------TVDPGTAILPD-HIRRNK 102 (255)
T ss_pred HHHHHHHHHHHHHhcCchhcccCCCCCceEEEEecCCcchHHHHHHHHhhce----------eeccccccCCH-HHhHHH
Confidence 4556677777777753 26789999999999999888876531 11111111111 123457
Q ss_pred HHHHHHhCCcceEEEeChhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 011115 279 KEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (493)
Q Consensus 279 ~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelfgGy~~ 354 (493)
...+..+|..+..+..+..+ +.+-. ....+.+..-++++-.-.+..++++.+++++.+|+ -|=.||..
T Consensus 103 ~~l~~~lg~~p~yveedl~~----i~kGa-lnGRfhpCGRCh~~I~~~V~~k~re~di~~vafGD---lLs~G~~s 170 (255)
T COG1365 103 EELETLLGEVPEYVEEDLED----IEKGA-LNGRFHPCGRCHSMIENAVMDKARELDIDVVAFGD---LLSTGYGS 170 (255)
T ss_pred HHHHHHHccCHHHHHHHHHH----HHhhh-ccCCCCCcchHHHHHHHHHHHHHHhcCCeEEEEcc---cccccccc
Confidence 78889999876554332222 11111 01223322223445556778889999999999995 45567753
No 114
>PRK08576 hypothetical protein; Provisional
Probab=97.81 E-value=0.00015 Score=74.30 Aligned_cols=122 Identities=20% Similarity=0.176 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhhccCc--ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC--CCCcHHHHHHHHHH
Q 011115 209 VLRQAFENAVIKRLMTDV--PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADY 284 (493)
Q Consensus 209 ~l~~~l~~aV~~rl~~~~--~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~--~~~d~~~A~~va~~ 284 (493)
.+-+.+++.+.+-++... ++.+.+|||.||++++.++.+.. .++.++++... .....++++++++.
T Consensus 216 ~~le~~e~~~~~~Lr~~~~~rVvVafSGGKDStvLL~La~k~~----------~~V~aV~iDTG~e~pet~e~~~~lae~ 285 (438)
T PRK08576 216 EVLEAFEKASIKFLRKFEEWTVIVPWSGGKDSTAALLLAKKAF----------GDVTAVYVDTGYEMPLTDEYVEKVAEK 285 (438)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcChHHHHHHHHHHHHhC----------CCCEEEEeCCCCCChHHHHHHHHHHHH
Confidence 344455555444444333 79999999999999999988865 24677776432 22356889999999
Q ss_pred hCCcceEEEeChhhhHHHHHHHHHhhccccccc-ccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 011115 285 LGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTT-IRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (493)
Q Consensus 285 lg~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~g~~v~ltG~GgDe 347 (493)
+|++++...++... .. .....+.... .+...-...+.+.+++.|+.++++|+-.||
T Consensus 286 LGI~lii~~v~~~~---~~----~~~g~p~~~~rcCt~lK~~pL~raake~g~~~iatG~R~dE 342 (438)
T PRK08576 286 LGVDLIRAGVDVPM---PI----EKYGMPTHSNRWCTKLKVEALEEAIRELEDGLLVVGDRDGE 342 (438)
T ss_pred cCCCEEEcccCHHH---Hh----hhcCCCCcccchhhHHHHHHHHHHHHhCCCCEEEEEeeHHH
Confidence 99987762222111 01 1011111101 111111123455667788999999987666
No 115
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=97.79 E-value=7e-05 Score=68.50 Aligned_cols=110 Identities=18% Similarity=0.281 Sum_probs=53.2
Q ss_pred CcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeec---cCCCCcHHHHHHHHHHhCC-----cceEEEeCh
Q 011115 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG---LEGSPDLKYAKEVADYLGT-----VHHEFHFTV 296 (493)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~---~~~~~d~~~A~~va~~lg~-----~~~~~~~~~ 296 (493)
.+++-++||||+||.+-+.++.+. |-.|.++++. +.+......++++++.+.. ....+.++.
T Consensus 3 ~gk~l~LlSGGiDSpVAa~lm~kr----------G~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~ 72 (197)
T PF02568_consen 3 QGKALALLSGGIDSPVAAWLMMKR----------GCEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLYVVDF 72 (197)
T ss_dssp T-EEEEE-SSCCHHHHHHHHHHCB----------T-EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEEEECH
T ss_pred CceEEEEecCCccHHHHHHHHHHC----------CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEEEECc
Confidence 457789999999999988888875 3567766664 3333445556666665532 222333333
Q ss_pred hhhHHHHHHHHHhhcccccccccchHHHHHH-HHHHHhCCCeEEEeccCcccc
Q 011115 297 QDGIDAIEEVIYHVETYDVTTIRASTPMFLM-SRKIKSLGVKMVISGEGSDEI 348 (493)
Q Consensus 297 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~g~~v~ltG~GgDel 348 (493)
.+... ++..... ...+++..-..|+.. .+.|.+.|++.++||+---++
T Consensus 73 ~~~~~---~i~~~~~-~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQv 121 (197)
T PF02568_consen 73 TEVQK---EILRGVK-ERNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQV 121 (197)
T ss_dssp HHHHH---HHHHHS--GGGHHHHHHHHHHHHHHHHHHHTT--EEE----SSST
T ss_pred HHHHH---HHHhcCC-ccchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHH
Confidence 33322 2222221 111111111223333 345678999999999865544
No 116
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=97.77 E-value=0.00011 Score=73.75 Aligned_cols=109 Identities=23% Similarity=0.260 Sum_probs=65.9
Q ss_pred EEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCC-CcHHHHHHHHHHhCC-cceEEEeChhhhH-HHHHHH
Q 011115 230 VLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-PDLKYAKEVADYLGT-VHHEFHFTVQDGI-DAIEEV 306 (493)
Q Consensus 230 v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~-~d~~~A~~va~~lg~-~~~~~~~~~~~~~-~~l~~~ 306 (493)
+++|||||||+++..+.+.. +..|+||++..-.. .|...+++-|..+|. +|+.+... +++. +.+-..
T Consensus 2 LAySGGLDTS~~l~~L~e~~---------~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r-~ef~~~~i~~a 71 (388)
T PF00764_consen 2 LAYSGGLDTSVILKWLKEEG---------GYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDAR-DEFAEDYIFPA 71 (388)
T ss_dssp EE--SSHHHHHHHHHHHHTT---------TEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-H-HHHHHHTHHHH
T ss_pred eeeCCChHHHHHHHHHHhhc---------CceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchH-HHHHHHHHHHH
Confidence 68999999999998888764 25899999876544 688899999999997 77777764 3444 444444
Q ss_pred HHhhccccc-ccccchHHHH----HHHHHHHhCCCeEEE---eccCcccc
Q 011115 307 IYHVETYDV-TTIRASTPMF----LMSRKIKSLGVKMVI---SGEGSDEI 348 (493)
Q Consensus 307 ~~~~~~~~~-~~~~~~~~~~----~~~~~a~~~g~~v~l---tG~GgDel 348 (493)
+.....+.. -.+..++... .+.+.|++.|++++. ||-|-|++
T Consensus 72 I~anA~Yeg~YpL~tsl~RplIa~~~v~~A~~~ga~~vaHG~TgkGNDqv 121 (388)
T PF00764_consen 72 IKANALYEGRYPLSTSLARPLIAKKLVEVAREEGADAVAHGCTGKGNDQV 121 (388)
T ss_dssp HHTT--BTTTB--CCCCHHHHHHHHHHHHHHHHT-SEEE----TTSSHHH
T ss_pred HHHHHHhCCCccccccchHHHHHHHHHHHHHHcCCeEEeccCCcCCCchh
Confidence 443322221 0111222222 344567788999887 45567764
No 117
>PRK05370 argininosuccinate synthase; Validated
Probab=97.67 E-value=0.00048 Score=69.76 Aligned_cols=117 Identities=19% Similarity=0.156 Sum_probs=76.8
Q ss_pred HhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC--CCcHHHHHHHHHHhCC-cceEEEeCh
Q 011115 220 KRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGT-VHHEFHFTV 296 (493)
Q Consensus 220 ~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~--~~d~~~A~~va~~lg~-~~~~~~~~~ 296 (493)
+.|....+|+++.|||+|||+++..+.+. +-.|+||++..-. ..|.+.+++-|..+|. +|..+...
T Consensus 6 ~~l~~~~KVvLAYSGGLDTSv~l~wL~e~----------~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr- 74 (447)
T PRK05370 6 KHLPVGQRVGIAFSGGLDTSAALLWMRQK----------GAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCR- 74 (447)
T ss_pred hhCCCCCEEEEEecCCchHHHHHHHHHhc----------CCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccH-
Confidence 34556678999999999999999888764 2579999986543 5688899999999998 46666654
Q ss_pred hhhH-HHHHHHHHhhccc--------cc-ccccchHHHHHHHHHHHhCCCeEEE---eccCcccc
Q 011115 297 QDGI-DAIEEVIYHVETY--------DV-TTIRASTPMFLMSRKIKSLGVKMVI---SGEGSDEI 348 (493)
Q Consensus 297 ~~~~-~~l~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~a~~~g~~v~l---tG~GgDel 348 (493)
+++. +.+ ..+.....+ .. ..+...+.--.+.+.|++.|++++. ||-|-|++
T Consensus 75 ~eF~e~~i-~aI~anA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQv 138 (447)
T PRK05370 75 AQLVAEGI-AAIQCGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIE 138 (447)
T ss_pred HHHHHHHH-HHHHcCCccccccCccccCCCcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCCchH
Confidence 3444 344 555433221 11 1111111112455678889999886 55667775
No 118
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=97.49 E-value=0.0014 Score=64.66 Aligned_cols=114 Identities=21% Similarity=0.232 Sum_probs=73.8
Q ss_pred CcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC-CCcHHHHHHHHHHhCCc-ceEEEeChhhhH-H
Q 011115 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPDLKYAKEVADYLGTV-HHEFHFTVQDGI-D 301 (493)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~-~~d~~~A~~va~~lg~~-~~~~~~~~~~~~-~ 301 (493)
..+|+++.|||||+|++.-.+.+.. |..|.|||...-. .+|.+.+++-|..+|.. |..+... +++. +
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL~e~~---------~~eVia~tadvGQ~eed~~~i~eKA~~~Ga~~~~viD~r-eeF~~~ 73 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWLKEKG---------GAEVIAVTADVGQPEEDLDAIREKALELGAEEAYVIDAR-EEFVED 73 (403)
T ss_pred CcEEEEEecCCccHHHHHHHHHHhc---------CceEEEEEEeCCCChHHhHHHHHHHHHhCCceEEEeecH-HHHHHH
Confidence 3578999999999999988888765 3688999987654 47899999999999986 5666654 3443 3
Q ss_pred HHHHHHHhhccccc-ccccchHHHHH----HHHHHHhCCCeEEE---eccCcccc
Q 011115 302 AIEEVIYHVETYDV-TTIRASTPMFL----MSRKIKSLGVKMVI---SGEGSDEI 348 (493)
Q Consensus 302 ~l~~~~~~~~~~~~-~~~~~~~~~~~----~~~~a~~~g~~v~l---tG~GgDel 348 (493)
.+-.++.....+.. -.+..+++.-+ +.+.|++.|+..+- ||-|-|++
T Consensus 74 yi~~~i~ana~Yeg~YpL~TalaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQv 128 (403)
T COG0137 74 YIFPAIKANALYEGVYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQV 128 (403)
T ss_pred HHHHHHHhhceeeccccccchhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCcee
Confidence 33333333222211 01111222222 34557778887775 56677876
No 119
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=97.43 E-value=0.00098 Score=73.13 Aligned_cols=90 Identities=23% Similarity=0.212 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHhhcc--CcceEEEecCCcchhHHHHHH-------HHHhcc--cccc----------ccc-------
Q 011115 207 PLVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASIT-------ARHLAG--TKAA----------RQW------- 258 (493)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a-------~~~~~~--~~~~----------~~~------- 258 (493)
.+++.....-.+..+++. ...+.+.||||+||+++|+++ .+.+.. .++. +.+
T Consensus 328 ~~ei~~~~~~~L~d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 407 (700)
T PLN02339 328 EEEIALGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKE 407 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhh
Confidence 356666666667776653 345779999999999988885 333311 0000 000
Q ss_pred --CCcceeeeeccCCCC--cHHHHHHHHHHhCCcceEEEeCh
Q 011115 259 --GTQLHSFCVGLEGSP--DLKYAKEVADYLGTVHHEFHFTV 296 (493)
Q Consensus 259 --~~~~~~~t~~~~~~~--d~~~A~~va~~lg~~~~~~~~~~ 296 (493)
+.-+++++++...+. ....|+++|+.+|+.|+++.+++
T Consensus 408 ~~~~~~~~v~mp~~~ss~~t~~~A~~la~~lG~~~~~i~I~~ 449 (700)
T PLN02339 408 FAKRIFYTVYMGSENSSEETRSRAKQLADEIGSSHLDVKIDG 449 (700)
T ss_pred hhcceeEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEeCHH
Confidence 011567777655443 45789999999999999999864
No 120
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=97.33 E-value=0.0015 Score=63.68 Aligned_cols=120 Identities=11% Similarity=0.074 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC-CCCc-HHHHHHHHHHhCCc
Q 011115 211 RQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTV 288 (493)
Q Consensus 211 ~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~-~~~d-~~~A~~va~~lg~~ 288 (493)
.++|.++++.- .+..+++|||.||++++.++.+..... +.++..+++... ..+| ..+..++++.+|++
T Consensus 9 i~ilRe~~~~f----~~~vv~~SGGKDS~VlLhLa~kaf~~~------~~p~~vl~IDTG~~F~Et~efrd~~a~~~gl~ 78 (294)
T TIGR02039 9 IHIIREVAAEF----ERPVMLYSIGKDSSVLLHLARKAFYPG------PLPFPLLHVDTGWKFREMIAFRDHMVAKYGLR 78 (294)
T ss_pred HHHHHHHHHhc----CCcEEEEecChHHHHHHHHHHHHhccc------CCCeEEEEEecCCCCHHHHHHHHHHHHHhCCC
Confidence 34454444432 234688999999999999999876321 135666766432 1344 46788999999998
Q ss_pred ceEEEeChhhhHHHHHHHHHhhcccc--cccccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 011115 289 HHEFHFTVQDGIDAIEEVIYHVETYD--VTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (493)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDel 348 (493)
++.+... +... .....+. ....+...-...+.+.+.+.|.+++++|.--||-
T Consensus 79 l~v~~~~--~~~~------~g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDEe 132 (294)
T TIGR02039 79 LIVHSNE--EGIA------DGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEE 132 (294)
T ss_pred EEEEech--hhhh------cCccccccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhhh
Confidence 8776542 2111 0000110 0001111223445566677899999999998884
No 121
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=97.14 E-value=0.0035 Score=59.13 Aligned_cols=75 Identities=24% Similarity=0.250 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeec--cCCCCcHHHHHH-HHHHh
Q 011115 209 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKE-VADYL 285 (493)
Q Consensus 209 ~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~--~~~~~d~~~A~~-va~~l 285 (493)
.+.+...+.|++++. +.++-+.||||.|||+.|.++++.. |.+++|.-+. +-.-.|.+...+ ..+++
T Consensus 6 ~~ie~~i~~ir~~vg-~~kvi~alSGGVDSsv~a~L~~~Ai---------Gd~l~cvfVD~GLlR~~E~e~V~~~f~~~~ 75 (315)
T COG0519 6 NFIEEAIEEIREQVG-DGKVILALSGGVDSSVAAVLAHRAI---------GDQLTCVFVDHGLLRKGEAEQVVEMFREHL 75 (315)
T ss_pred HHHHHHHHHHHHHhC-CceEEEEecCCCcHHHHHHHHHHHh---------hcceEEEEecCCcccCCcHHHHHHHHHhhc
Confidence 455555566777765 6789999999999999999999987 4677776653 323356555544 44558
Q ss_pred CCcceEEE
Q 011115 286 GTVHHEFH 293 (493)
Q Consensus 286 g~~~~~~~ 293 (493)
|++...+.
T Consensus 76 ~~nl~~Vd 83 (315)
T COG0519 76 GLNLIVVD 83 (315)
T ss_pred CCceEEEc
Confidence 87765554
No 122
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=96.93 E-value=0.0029 Score=60.35 Aligned_cols=59 Identities=10% Similarity=0.138 Sum_probs=44.8
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC-CCC-cHHHHHHHHHHhCCcceEEEeC
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSP-DLKYAKEVADYLGTVHHEFHFT 295 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~-~~~-d~~~A~~va~~lg~~~~~~~~~ 295 (493)
++.+.+|||.||++++.++.+.. .++..+.+... ..+ -.++++++++++|++.+++...
T Consensus 42 ~i~vs~SGGKDS~vlL~L~~~~~----------~~i~vvfiDTG~~~pet~e~~~~~~~~~gl~l~v~~~~ 102 (241)
T PRK02090 42 RLALVSSFGAEDAVLLHLVAQVD----------PDIPVIFLDTGYLFPETYRFIDELTERLLLNLKVYRPD 102 (241)
T ss_pred CEEEEecCCHHHHHHHHHHHhcC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 58999999999999999999853 45666665322 223 3478899999999998877654
No 123
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.92 E-value=0.0033 Score=69.44 Aligned_cols=133 Identities=22% Similarity=0.200 Sum_probs=89.2
Q ss_pred CEEEEEeeeeecCCCC--CCCCceeCCCcEEEEEeeEEcChH------HHHHHh-------------cCCCccCCCHHHH
Q 011115 43 DFYLAHQRLAIIDPAS--GDQPLYNEDKKIVVTVNGEIYNHE------ALRERL-------------TNHKFRTGSDCDV 101 (493)
Q Consensus 43 ~~~l~h~rl~~~~~~~--~~qP~~~~~~~~~~~~nG~i~n~~------el~~~l-------------~~~~~~~~~D~e~ 101 (493)
.++|.|+|.++....+ -+||+. ++.|||||.-.. .-|+.+ ..+.-...||+..
T Consensus 285 ~~AlvHsRFSTNTfPsWdrAQPmR------~l~HNGEINTlrGN~NwMraREg~mks~~~~~e~~kl~Pive~~~SDSa~ 358 (2142)
T KOG0399|consen 285 HFALVHSRFSTNTFPSWDRAQPMR------FLAHNGEINTLRGNKNWMRAREGVMKSAVFKDELNKLLPIVEEGGSDSAA 358 (2142)
T ss_pred cceeeeeccccCCCCCccccccch------hhhccCceeeeccchhHHHHHHHhhhcchhhhhhhhhcccccCCCCchhh
Confidence 5889999999987543 679985 699999996321 111111 1111234566532
Q ss_pred ---HHHHHHHHh---------------------------------HhHHhhccccEEEEEEECCCCEEEEEecCCCCceE
Q 011115 102 ---IAHLYEEYG---------------------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSL 145 (493)
Q Consensus 102 ---i~~~~~~~g---------------------------------~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~pL 145 (493)
+++++.+.| .-.++-.+|.--+.+-|. +.+-+.-||-|.||.
T Consensus 359 lDnv~ElLvrsG~rslpEAvM~mVPEA~~nd~~~~~e~k~fYd~~a~~MEpWDGPALl~FsDG--ry~GA~LDRNGLRP~ 436 (2142)
T KOG0399|consen 359 LDNVLELLVRSGGRSLPEAVMMMVPEAWQNDKNMDPEKKAFYDWAACQMEPWDGPALLTFSDG--RYCGAILDRNGLRPA 436 (2142)
T ss_pred hhHHHHHHHHhCCCCcHHHHHHhChHHHhcCCCCCHHHHHHHHHHhhcCCCCCCceEEEecCC--ceeeeeeccCCCcce
Confidence 455554444 113567789877778787 788899999999999
Q ss_pred EEEEecCcEEEEEeCcchhccccCCc---EEeCCCcEEEec
Q 011115 146 YIGWGLDGSIWISSELKGLNDDCEHF---EAFPPGHLYSSK 183 (493)
Q Consensus 146 yy~~~~~~~~~faSe~~~l~~~~~~i---~~l~pG~~~~~~ 183 (493)
-|+...|+.++.|||+-.+.-....| -+|.||.++.++
T Consensus 437 Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~MllVD 477 (2142)
T KOG0399|consen 437 RYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMMLLVD 477 (2142)
T ss_pred eeEEecCCEEEEeecccccCCCHHHhhhccCcCCCeEEEEE
Confidence 88887789999999987654332222 278999986553
No 124
>PRK08557 hypothetical protein; Provisional
Probab=96.77 E-value=0.012 Score=60.50 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=43.4
Q ss_pred CcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC-CCCc-HHHHHHHHHHhCCcceEEE
Q 011115 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFH 293 (493)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~-~~~d-~~~A~~va~~lg~~~~~~~ 293 (493)
..++.+.+|||.||++++.++.+.. .++..+++... ..+| .++++++++.+|++.+.+.
T Consensus 181 ~~~i~vsfSGGKDS~vlL~L~~~~~----------~~i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~ 241 (417)
T PRK08557 181 GYAINASFSGGKDSSVSTLLAKEVI----------PDLEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLD 241 (417)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHhC----------CCCEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 3568899999999999999888764 34555555331 1233 4689999999999877765
No 125
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=96.77 E-value=0.0036 Score=56.23 Aligned_cols=106 Identities=17% Similarity=0.164 Sum_probs=53.9
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC-CCCc-HHHHHHHHHHhCCcceEEEeChhhhHHHHH
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~-~~~d-~~~A~~va~~lg~~~~~~~~~~~~~~~~l~ 304 (493)
++.+.+|||.||++++.++.+... ++..+.+... +.+| ..+++.+++.+|++.+.+... ......+.
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~----------~~~vv~~dtg~e~p~t~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~ 69 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGR----------KVPVVFIDTGYEFPETYEFVDELAKRYGIPIIVYRPP-ETFEQRFI 69 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHT----------TCEEEEEE-STB-HHHHHHHHHHHHHTTCEEEEEETT-SHHHHHHH
T ss_pred CeEEEecCCHHHHHHHHHHHHhcC----------CCcEEEEecCccCHHHHHHHHHHHhhhhhhhhhcccc-cchhhccc
Confidence 367999999999999999998873 3333333221 2334 478899999999884444332 22222221
Q ss_pred HHHHhhcccccccccc-hHH---HHHHHHHHHhCCCeEEEeccCcccc
Q 011115 305 EVIYHVETYDVTTIRA-STP---MFLMSRKIKSLGVKMVISGEGSDEI 348 (493)
Q Consensus 305 ~~~~~~~~~~~~~~~~-~~~---~~~~~~~a~~~g~~v~ltG~GgDel 348 (493)
..-. +.. .... ... .-.+.+..++.+..++++|.=+||=
T Consensus 70 ~~~~----~~~-~~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es 112 (174)
T PF01507_consen 70 LYGW----PSK-LWRWWCCSILKVKPLRRALKEYGKDVWIIGVRADES 112 (174)
T ss_dssp HHHH----STT-HHHHHHHHHHTHHHHHHHHHHTTESEEE----TTST
T ss_pred cccc----cch-hhhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhch
Confidence 1111 110 0000 000 1122333456677899999999884
No 126
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=96.73 E-value=0.011 Score=59.42 Aligned_cols=112 Identities=21% Similarity=0.302 Sum_probs=58.6
Q ss_pred cCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCC-CcH--HHHHHHH-HHhCCcceEEEeChhhh
Q 011115 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-PDL--KYAKEVA-DYLGTVHHEFHFTVQDG 299 (493)
Q Consensus 224 ~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~-~d~--~~A~~va-~~lg~~~~~~~~~~~~~ 299 (493)
+.+++-++||||+||-+-+.++.+. |-.++.+++..++. .+. .-+..++ +.+.-.++.+.+..-++
T Consensus 174 t~Gk~l~LlSGGIDSPVA~~l~mkR----------G~~v~~v~f~~~p~~~~~a~~k~~~l~~~~~~~~~~~~~~~~v~f 243 (383)
T COG0301 174 TQGKVLLLLSGGIDSPVAAWLMMKR----------GVEVIPVHFGNPPYTSEKAREKVVALALLRLTSYGGKVRLYVVPF 243 (383)
T ss_pred cCCcEEEEEeCCCChHHHHHHHHhc----------CCEEEEEEEcCCCCchHHHHHHHHHHHhhhhcccCCceEEEEEch
Confidence 4567889999999999999888875 36777777754332 222 1222333 33332222222211122
Q ss_pred HHHHHHHHHhh-cccccccccchHHHHHH-HHHHHhCCCeEEEeccCccc
Q 011115 300 IDAIEEVIYHV-ETYDVTTIRASTPMFLM-SRKIKSLGVKMVISGEGSDE 347 (493)
Q Consensus 300 ~~~l~~~~~~~-~~~~~~~~~~~~~~~~~-~~~a~~~g~~v~ltG~GgDe 347 (493)
.+...++.... +.+.... .--.|+.+ .+.|.+.|+..++||+.--+
T Consensus 244 ~~v~~~i~~~~~~~y~~v~--~rR~M~riA~~iae~~g~~aIvtGEsLGQ 291 (383)
T COG0301 244 TEVQEEILEKVPESYRCVL--LKRMMYRIAEKLAEEFGAKAIVTGESLGQ 291 (383)
T ss_pred HHHHHHHHhhcCccceehH--HHHHHHHHHHHHHHHhCCeEEEecCcchh
Confidence 22222322222 2221111 11123433 34677889999999976433
No 127
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=96.71 E-value=0.012 Score=57.56 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=65.3
Q ss_pred cceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC-CCCc-HHHHHHHHHHhCCcceEEEeChhhhHHHH
Q 011115 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (493)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~-~~~d-~~~A~~va~~lg~~~~~~~~~~~~~~~~l 303 (493)
.++++++|||.||++++.++.+..... +.++..+++... ..+| ..+..++++.+|++++.+.. .+.+.
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~~------~~~~pvl~VDTG~~FpEt~efrD~~a~~~gl~Liv~~~--~~~~~-- 107 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRPT------RPPFPLLHVDTTWKFREMIDFRDRRAKELGLDLVVHHN--PDGIA-- 107 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhccc------CCCeeEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEecC--hHHHH--
Confidence 346799999999999999999875321 145666766432 2244 57888999999998766543 22111
Q ss_pred HHHHHhhccccc--ccccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 011115 304 EEVIYHVETYDV--TTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (493)
Q Consensus 304 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDe 347 (493)
. ....+.. ...+...-...+.+.+.+.|.+++++|.=-||
T Consensus 108 -~---G~~~~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE 149 (312)
T PRK12563 108 -R---GIVPFRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDE 149 (312)
T ss_pred -h---CCCcccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHH
Confidence 1 0111110 00111111233445556678899999988887
No 128
>PRK13795 hypothetical protein; Provisional
Probab=96.30 E-value=0.023 Score=61.90 Aligned_cols=60 Identities=30% Similarity=0.387 Sum_probs=45.0
Q ss_pred CcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeec--cCCCCcHHHHHHHHHHhCCcceEEEe
Q 011115 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGTVHHEFHF 294 (493)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~--~~~~~d~~~A~~va~~lg~~~~~~~~ 294 (493)
+.++.+.+|||.||++++.++.+.. .++..+.+. .+.....++++++++++|++++.+..
T Consensus 243 ~~~v~Va~SGGKDS~vll~L~~~a~----------~~~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~~~~ 304 (636)
T PRK13795 243 NLPVSVSFSGGKDSLVVLDLAREAL----------KDFKAFFNNTGLEFPETVENVKEVAEEYGIELIEADA 304 (636)
T ss_pred CCCEEEEecCcHHHHHHHHHHHHhC----------CCcEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEcc
Confidence 4579999999999999999999865 345555443 33223457899999999998777654
No 129
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=96.19 E-value=0.017 Score=45.40 Aligned_cols=34 Identities=38% Similarity=0.553 Sum_probs=24.4
Q ss_pred eEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeec
Q 011115 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG 268 (493)
Q Consensus 228 v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~ 268 (493)
+.+.+|||.||..++.++.+.... +..+.+++++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~~-------~~~~~~~~~~ 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKSG-------GPEVVALVVV 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHhc-------CCCEEEEEeH
Confidence 458899999999999998876311 2455566654
No 130
>PRK13794 hypothetical protein; Provisional
Probab=96.14 E-value=0.054 Score=56.94 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=43.9
Q ss_pred CcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeec--cCCCCcHHHHHHHHHHhCCcceEEE
Q 011115 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGTVHHEFH 293 (493)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~--~~~~~d~~~A~~va~~lg~~~~~~~ 293 (493)
..++.+.+|||.||++++.++.+... .++..+.+. ++.....++++++++++|++.+.+.
T Consensus 247 ~~~v~vs~SGGKDS~v~L~L~~~~~~---------~~~~vvfiDTG~efpet~e~i~~~~~~~gl~i~~~~ 308 (479)
T PRK13794 247 NKPVTVAYSGGKDSLATLLLALKALG---------INFPVLFNDTGLEFPETLENVEDVEKHYGLEIIRTK 308 (479)
T ss_pred CCCEEEEecchHHHHHHHHHHHHHhC---------CCeEEEEEECCCCChHHHHHHHHHHHhcCCcEEEEc
Confidence 35789999999999999999887641 355555553 3322345678999999999876654
No 131
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=96.02 E-value=0.075 Score=49.75 Aligned_cols=60 Identities=27% Similarity=0.225 Sum_probs=41.9
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC-------CCcHHHHHHHHHHhCCcceEEEeCh
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-------SPDLKYAKEVADYLGTVHHEFHFTV 296 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~-------~~d~~~A~~va~~lg~~~~~~~~~~ 296 (493)
++.+++|||-||++-+..+.+.. ..+..+|.-..+ ..+...++..|+.+|++++.+..+.
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~~----------~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~ 68 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEEH----------EVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSG 68 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHcC----------eeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCC
Confidence 47789999999999887776541 123333332221 2467889999999999998777653
No 132
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=96.00 E-value=0.027 Score=53.75 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=45.6
Q ss_pred cceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCCcHHHHHHHHHHhCCcceE
Q 011115 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHE 291 (493)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~va~~lg~~~~~ 291 (493)
..+.++.|||+|+|.|++.+.+. |-.|.+|......-.|.+.|++-|...|..--.
T Consensus 6 ~~vVLAySGgLDTscil~WLkeq----------GyeViay~AnvGQ~edfe~ar~kAlk~Gakk~~ 61 (412)
T KOG1706|consen 6 KSVVLAYSGGLDTSCILAWLKEQ----------GYEVIAYLANVGQKEDFEEARKKALKSGAKKVV 61 (412)
T ss_pred ceEEEEecCCcCchhhhHHHHhc----------CceEEEeeccccchhhHHHHHHhhhhcCceEEE
Confidence 55678999999999999998875 468999987665567889999999999976443
No 133
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=95.78 E-value=0.097 Score=49.34 Aligned_cols=64 Identities=6% Similarity=0.017 Sum_probs=44.5
Q ss_pred CcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC-CCCc-HHHHHHHHHHhCCcceEEEeChh
Q 011115 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFHFTVQ 297 (493)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~-~~~d-~~~A~~va~~lg~~~~~~~~~~~ 297 (493)
..++.+..|||.||++++.++++... .++..+.+... ..+| .+++.++++.+++..+.+...+.
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~~~~~---------~~i~vv~vDTg~~fpET~e~~d~~~~~~~~~l~v~~~~~~ 90 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLSSISE---------PMIPVIFIDTLYHFPQTLTLKDELTKKYYQTLNLYKYDGC 90 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhC---------CCCCEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEEeCCc
Confidence 34688999999999999999998751 24555555432 2233 47899999999965555554443
No 134
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=95.77 E-value=0.074 Score=49.65 Aligned_cols=58 Identities=7% Similarity=0.097 Sum_probs=41.9
Q ss_pred cceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC-CCCc-HHHHHHHHHHhCCcceEEE
Q 011115 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFH 293 (493)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~-~~~d-~~~A~~va~~lg~~~~~~~ 293 (493)
.++.+.+|||.||++++.++.+.. .++..+.+... ..+| .++.+++++.++++...+.
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~~~~~----------~~~~v~f~DTg~efpeT~efv~~~~~~~~l~i~~~~ 73 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLVSKIS----------PDIPVIFLDTGYHFPETYELIDELTERYPLNIKVYK 73 (212)
T ss_pred CCEEEEecCCHHHHHHHHHHHhcC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEC
Confidence 368999999999999999998864 35555554432 2344 3578899999997655443
No 135
>PRK06850 hypothetical protein; Provisional
Probab=95.32 E-value=0.23 Score=52.05 Aligned_cols=134 Identities=18% Similarity=0.155 Sum_probs=66.2
Q ss_pred HHHHHHHHhh-ccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC-CCCcH--------HHHHHHH
Q 011115 213 AFENAVIKRL-MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPDL--------KYAKEVA 282 (493)
Q Consensus 213 ~l~~aV~~rl-~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~-~~~d~--------~~A~~va 282 (493)
.+.+.|++.. ..+.|+.|.+|||-||++++.++.+.+..-... .--.+++.++...- +.++. ...+..|
T Consensus 21 ~~i~~i~~~Y~~~~~P~vV~fSGGKDStavL~Lv~~Al~~lp~e-~r~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i~~~a 99 (507)
T PRK06850 21 ELIEEIQELYCADNRPWVIGYSGGKDSTAVLQLVWNALAGLPPE-KRTKPVYVISSDTLVENPVVVDWVNKSLERINEAA 99 (507)
T ss_pred HHHHHHHHHHhcCCCCeEEeCCCCchHHHHHHHHHHHHHhcchh-ccCCcEEEEECCCCCccHHHHHHHHHHHHHHHHHH
Confidence 3334555544 456789999999999999998887664311000 00023444443221 22332 2234456
Q ss_pred HHhCCcceEEEeChhhhHHHHHHHHHhhccccc-ccccchH------HH-HHHHHHHHhCCCeEEEeccCcccc
Q 011115 283 DYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDV-TTIRAST------PM-FLMSRKIKSLGVKMVISGEGSDEI 348 (493)
Q Consensus 283 ~~lg~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~------~~-~~~~~~a~~~g~~v~ltG~GgDel 348 (493)
+..|++.+...+.|..-...+..++- ...|.+ ...+... |+ -++.+..++.|..++++|.=.||=
T Consensus 100 ~~~glpi~~~~v~P~~~~sFwv~liG-rG~P~Ps~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES 172 (507)
T PRK06850 100 KKQGLPITPHKLTPKINDTFWVNLIG-KGYPAPRRKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAES 172 (507)
T ss_pred HHcCCceEEEeeCCCcchhHHHHHhc-CCCCCCCCCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeecccc
Confidence 77788766555444321122223221 111111 1112211 11 122222345567789999988874
No 136
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=95.14 E-value=0.17 Score=52.36 Aligned_cols=123 Identities=21% Similarity=0.189 Sum_probs=61.1
Q ss_pred ccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccC-CCCcH-H-------HHHHHHHHhCCcceEEE
Q 011115 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPDL-K-------YAKEVADYLGTVHHEFH 293 (493)
Q Consensus 223 ~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~-~~~d~-~-------~A~~va~~lg~~~~~~~ 293 (493)
..+.|..|.+|||-||++++.++.+.+..-.. ...-.+++.++...- +.++. . ..+..|+..|++.....
T Consensus 11 ~~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~-e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~lpi~~~~ 89 (447)
T TIGR03183 11 SDDIPWVVGYSGGKDSTAVLQLIWNALAALPA-EQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQGLPIEPHR 89 (447)
T ss_pred hcCCceEEEeCCCHHHHHHHHHHHHHHHhccc-cccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcCCCeEEEe
Confidence 35678899999999999999888776422100 000023444333221 22321 2 23456677787765544
Q ss_pred eChhhhHHHHHHHHHhhccccc-ccccchH------HH-HHHHHHHHhCCCeEEEeccCccc
Q 011115 294 FTVQDGIDAIEEVIYHVETYDV-TTIRAST------PM-FLMSRKIKSLGVKMVISGEGSDE 347 (493)
Q Consensus 294 ~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~------~~-~~~~~~a~~~g~~v~ltG~GgDe 347 (493)
+.+..-...+..++- ...|.+ ...+... |+ -++.+.+++.|..++++|.=.||
T Consensus 90 v~P~~~~~Fwv~liG-rG~P~P~~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~E 150 (447)
T TIGR03183 90 LTPEIKDTFWVNLIG-KGYPAPRQKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAE 150 (447)
T ss_pred cCCCcchHHHHHHhc-CCCCCCCCCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhh
Confidence 444321222223221 111111 1112111 11 12233334567789999988777
No 137
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=95.08 E-value=0.12 Score=50.36 Aligned_cols=56 Identities=21% Similarity=0.282 Sum_probs=38.4
Q ss_pred ccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCC--CcHHHHHHHHH
Q 011115 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVAD 283 (493)
Q Consensus 223 ~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~--~d~~~A~~va~ 283 (493)
..-..|+|.+|||-||++++.++++...+.+. .+|..+-+.+++. --.++.+++-+
T Consensus 25 ~~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~-----~~i~VlfiD~E~QYs~TidyV~em~~ 82 (407)
T COG3969 25 NTFPRVCVSFSGGKDSGLMLHLVAEVARENGR-----DKISVLFIDWEAQYSCTIDYVQEMRE 82 (407)
T ss_pred hcCCeEEEEecCCCchhHHHHHHHHHHHHhCC-----CceEEEEEcchhhhhhHHHHHHHHHh
Confidence 45567999999999999999999887655421 2677777777653 23345544444
No 138
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.64 E-value=0.27 Score=47.48 Aligned_cols=59 Identities=17% Similarity=0.279 Sum_probs=42.3
Q ss_pred cceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeec--cCCCCcHHHHHHHHHHhCCcceEEEe
Q 011115 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGTVHHEFHF 294 (493)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~--~~~~~d~~~A~~va~~lg~~~~~~~~ 294 (493)
.++.+..|||.||++++.++.+.. .++..+.+. +.-..-..++.++++++|++..++..
T Consensus 40 ~~~~~~~S~Gkds~V~l~L~~k~~----------~~~~vif~DTg~~f~Et~~~~d~~~~~~~~~l~~~~~ 100 (261)
T COG0175 40 NPVVVSFSGGKDSTVLLHLAAKAF----------PDFPVIFLDTGYHFPETYEFRDRLAEEYGLDLKVYRP 100 (261)
T ss_pred CCeEEEecCchhHHHHHHHHHHhc----------CCCcEEEEeCCCcCHHHHHHHHHHHHHcCCeEEEecC
Confidence 457899999999999999999876 234444443 32222357899999999976555443
No 139
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=94.46 E-value=0.19 Score=50.67 Aligned_cols=69 Identities=25% Similarity=0.345 Sum_probs=51.7
Q ss_pred HHHhhccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeee--ccCCCCcHHHHHHHHHHhCCcceEEEeC
Q 011115 218 VIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFHFT 295 (493)
Q Consensus 218 V~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~--~~~~~~d~~~A~~va~~lg~~~~~~~~~ 295 (493)
+++++. +..|-+++|||.||++.++++.+.+.. .++++..+ |+....|....++....+|++.+.+..+
T Consensus 224 i~k~vG-~~~Vl~~vSGgvdStV~a~Ll~~alg~--------~R~~ai~vdNG~mrk~Ea~~V~~tl~~lgi~i~v~~as 294 (552)
T KOG1622|consen 224 IRKWVG-DYKVLVAVSGGVDSTVCAALLRRALGP--------DRVHAIHVDNGFMRKKEAEQVEKTLVYLGIPITVVDAS 294 (552)
T ss_pred HHHHhc-ccceEEEecCCchHHHHHHHHHHhhCC--------CceEEEEecccchhhhHHHHHHHHHHHcCCceEEeech
Confidence 344554 667889999999999999999988732 47777776 4555567777777777799988877654
No 140
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=93.20 E-value=0.97 Score=41.81 Aligned_cols=60 Identities=25% Similarity=0.290 Sum_probs=41.8
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCccee-eeeccCCC-------CcHHHHHHHHHHhCCcceEEEeCh
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHS-FCVGLEGS-------PDLKYAKEVADYLGTVHHEFHFTV 296 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~-~t~~~~~~-------~d~~~A~~va~~lg~~~~~~~~~~ 296 (493)
++.+++|||-||..-+..|-+. |..|.+ +++..+.. +....+...|+.+|+++.....+.
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~----------G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g 69 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEE----------GHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSG 69 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHc----------CCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCc
Confidence 4678999999998777666654 245543 34333222 467889999999999977766654
No 141
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=90.17 E-value=1.2 Score=41.72 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=38.6
Q ss_pred eEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC-------CCcHHHHHHHHHHhCCcceEEEe
Q 011115 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-------SPDLKYAKEVADYLGTVHHEFHF 294 (493)
Q Consensus 228 v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~-------~~d~~~A~~va~~lg~~~~~~~~ 294 (493)
+.+++|||-||+.-+..|.+. - ..+..+|+...+ .......+..|+.+|+++..+..
T Consensus 3 ~~~l~SGGKDS~~al~~a~~~-~---------~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~ 66 (223)
T TIGR00290 3 VAALISGGKDSCLALYHALKE-H---------EVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYT 66 (223)
T ss_pred EEEEecCcHHHHHHHHHHHHh-C---------eeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeec
Confidence 568999999999887777664 2 233334432221 23557889999999999866543
No 142
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=90.14 E-value=0.48 Score=44.26 Aligned_cols=59 Identities=22% Similarity=0.186 Sum_probs=34.6
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCC-------CCcHHHHHHHHHHhCCcceEEEeC
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-------SPDLKYAKEVADYLGTVHHEFHFT 295 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~-------~~d~~~A~~va~~lg~~~~~~~~~ 295 (493)
++.+++|||-||++-+..|.+.. .....+|+..++ ..-....+..|+.+|+++..+..+
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~~----------~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~ 67 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQH----------EVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTS 67 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT-----------EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE-
T ss_pred cEEEEEcCcHHHHHHHHHHHHhC----------CccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEcc
Confidence 46789999999998776666541 122333432221 123456788899999998887775
No 143
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=88.07 E-value=2.5 Score=43.45 Aligned_cols=70 Identities=29% Similarity=0.393 Sum_probs=42.0
Q ss_pred ceEEEecCCcchhHHHHHHHHHhcc---------ccccc---------cc---------CCcceeeeeccCCCC-c-HHH
Q 011115 227 PFGVLLSGGLDSSLVASITARHLAG---------TKAAR---------QW---------GTQLHSFCVGLEGSP-D-LKY 277 (493)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~---------~~~~~---------~~---------~~~~~~~t~~~~~~~-d-~~~ 277 (493)
-.-+.||||+||+++|++....... .+... ++ +.-++|.-++.+.+. | ...
T Consensus 351 GfflPLSGG~DSsatA~iV~sMC~~V~~av~~g~eqv~~Dvr~i~~~~~~~p~dp~~l~nri~~TcyMgSenSS~ETr~r 430 (706)
T KOG2303|consen 351 GFFLPLSGGVDSSATAAIVYSMCRQVCKAVQSGDEQVLADVRRIVNDISYTPTDPADLCNRILYTCYMGSENSSKETRRR 430 (706)
T ss_pred ceEEecCCCccchHHHHHHHHHHHHHHHHHHcCchhhhhhhHHHhcCCCcCCCCHHHHHHhhhhhheeccccccHHHHHH
Confidence 3557899999999999886543321 00000 00 011222233444443 3 357
Q ss_pred HHHHHHHhCCcceEEEeCh
Q 011115 278 AKEVADYLGTVHHEFHFTV 296 (493)
Q Consensus 278 A~~va~~lg~~~~~~~~~~ 296 (493)
|+++|+.+|.-|..+.++.
T Consensus 431 ak~La~~igs~H~~i~iD~ 449 (706)
T KOG2303|consen 431 AKELANQIGSYHIDLNIDT 449 (706)
T ss_pred HHHHHHhhcceeeeeeehH
Confidence 9999999999998888764
No 144
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=76.97 E-value=6.2 Score=38.65 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=64.6
Q ss_pred ccCcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeec--cCCC-CcHH-HHHHHHHHhCCcceEEEeChhh
Q 011115 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGS-PDLK-YAKEVADYLGTVHHEFHFTVQD 298 (493)
Q Consensus 223 ~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~--~~~~-~d~~-~A~~va~~lg~~~~~~~~~~~~ 298 (493)
.....|++.-|||-||+++|.+...+.... .+|..+...++. ..+. ++.. ..++....+|+|..++. ..+
T Consensus 49 ~rge~v~igasGgkdstvlA~v~~~Ln~r~----~~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lPL~ivs--~~d 122 (347)
T KOG2840|consen 49 ARGERVAIGASGGKDSTVLAYVLDALNERH----DYGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPLCIVS--YKD 122 (347)
T ss_pred CCCCccccccccchhHHHHHHHHHHhhhhc----CCCceeeeeeccccccceeccHHHHHHHhhhhcCCceEEec--HHH
Confidence 344568999999999999999888764321 123445455542 2222 3443 34556678899988765 344
Q ss_pred hHH-----HHHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 011115 299 GID-----AIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (493)
Q Consensus 299 ~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDel 348 (493)
+.. .+...+. .+.-+..++...+-.-.+-+.+...++.-+.||+.+|..
T Consensus 123 l~~~~tmd~i~~~i~-~~~rn~ctfCgv~RrqaL~~ga~~l~~~~~~tghnaDD~ 176 (347)
T KOG2840|consen 123 LYGEWTMDEIVSEIG-QEIRNNCTFCGVFRRQALDRGADVLGAAELVTGHNADDW 176 (347)
T ss_pred HhccchHHHHHHHHh-hhhhcCceeecHHHHHHHHhhccccchhhhhhcccchHH
Confidence 433 2222221 111111111111112233333445677778999999974
No 145
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=65.59 E-value=3.5 Score=19.77 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=11.0
Q ss_pred cccCceeccccCCh
Q 011115 388 SAWGLEARVPFLDK 401 (493)
Q Consensus 388 ~~~gie~r~PflD~ 401 (493)
|.|++.+|+|.|.+
T Consensus 1 mthsmrlrfptlnq 14 (14)
T PF08057_consen 1 MTHSMRLRFPTLNQ 14 (14)
T ss_pred CccceeeeccccCC
Confidence 56788899998763
No 146
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=53.23 E-value=26 Score=31.93 Aligned_cols=50 Identities=8% Similarity=0.131 Sum_probs=35.2
Q ss_pred CcchhHHHHHHHHHhcccccccccCCcceeeeeccC-CCCc-HHHHHHHHHHhCCcceEEEe
Q 011115 235 GLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFHF 294 (493)
Q Consensus 235 GlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~-~~~d-~~~A~~va~~lg~~~~~~~~ 294 (493)
|+||.+++.++.+.. .++..+.+... ..+| .+++.++++.+|++.+.+..
T Consensus 2 ~~~s~Vll~L~~~~~----------~~~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~~ 53 (191)
T TIGR02055 2 GAEDVVLVDLAAKVR----------PDVKVFFLDTGRLFKETYETIDQVRERYDILIDVLSP 53 (191)
T ss_pred ChHHHHHHHHHHhcC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 789999999999875 34555555322 1233 47899999999987666543
No 147
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=52.42 E-value=75 Score=28.57 Aligned_cols=97 Identities=14% Similarity=0.075 Sum_probs=53.7
Q ss_pred EecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCCcHH------HHHHHHHHhCCcceEEEeChhhhHHHHH
Q 011115 231 LLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLK------YAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (493)
Q Consensus 231 ~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~------~A~~va~~lg~~~~~~~~~~~~~~~~l~ 304 (493)
..-=|.||+.+.-.+.+. |.+++.|=+...-.|..+ ..+++|+.++++..+-..+++++.+.
T Consensus 4 H~CCaPCs~~~~~~L~~~----------g~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~Y~~~~w~~~-- 71 (176)
T PF02677_consen 4 HICCAPCSTYPLERLREE----------GFDVTGYFYNPNIHPYEEYERRLEELKRFAEKLGIPLIEGDYDPEEWLRA-- 71 (176)
T ss_pred eecCccccHHHHHHHHHC----------CCCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCCEEecCCCHHHHHHH--
Confidence 334578999888777664 256666666554445444 35678899998765544444444433
Q ss_pred HHHHhhccccccccc----chHHHHHHHHHHHhCCCeEEEe
Q 011115 305 EVIYHVETYDVTTIR----ASTPMFLMSRKIKSLGVKMVIS 341 (493)
Q Consensus 305 ~~~~~~~~~~~~~~~----~~~~~~~~~~~a~~~g~~v~lt 341 (493)
+...+.......+ ..+.+-..++.|++.|.+.+=|
T Consensus 72 --v~~~e~epE~g~RC~~Cy~~RL~~tA~~A~e~gfd~FtT 110 (176)
T PF02677_consen 72 --VKGLEDEPEGGKRCRVCYDLRLEKTAQYAKELGFDYFTT 110 (176)
T ss_pred --HhhCccCCccCchhHHHHHHHHHHHHHHHHHcCCCEEEc
Confidence 3223321111111 1223345567788887755444
No 148
>PLN02309 5'-adenylylsulfate reductase
Probab=51.77 E-value=64 Score=33.82 Aligned_cols=57 Identities=11% Similarity=0.084 Sum_probs=37.5
Q ss_pred cceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeec--cCCCCcHHHHHHHHHHhCCcceEEE
Q 011115 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGTVHHEFH 293 (493)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~--~~~~~d~~~A~~va~~lg~~~~~~~ 293 (493)
.++++..|||-|| +++.++++.. .++..|.+. +.-..-.+++.++++++|++.+.+.
T Consensus 111 ~~ia~~~SG~ed~-vll~l~~~~~----------~~ipV~flDTG~lfpETy~~~d~v~~~ygl~i~~~~ 169 (457)
T PLN02309 111 NDIAIAFSGAEDV-ALIEYAHLTG----------RPFRVFSLDTGRLNPETYRLFDAVEKHYGIRIEYMF 169 (457)
T ss_pred CCEEEEecchHHH-HHHHHHHHhC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEC
Confidence 4688899966665 5666776653 345555553 3322335789999999998766654
No 149
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=48.60 E-value=17 Score=33.82 Aligned_cols=18 Identities=44% Similarity=0.440 Sum_probs=14.4
Q ss_pred cCcceEEEecCCcchhHH
Q 011115 224 TDVPFGVLLSGGLDSSLV 241 (493)
Q Consensus 224 ~~~~v~v~LSGGlDSs~i 241 (493)
+.+-.|++||||+||+.-
T Consensus 53 kkGy~g~llSGGm~srg~ 70 (275)
T COG1856 53 KKGYEGCLLSGGMDSRGK 70 (275)
T ss_pred hcCceeEEEeCCcCCCCC
Confidence 345579999999999964
No 150
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=45.39 E-value=86 Score=32.93 Aligned_cols=57 Identities=11% Similarity=0.117 Sum_probs=38.3
Q ss_pred cceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeec--cCCCCcHHHHHHHHHHhCCcceEEE
Q 011115 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGTVHHEFH 293 (493)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~--~~~~~d~~~A~~va~~lg~~~~~~~ 293 (493)
.++++..|||-|| +++.++.+.. .++..+++. +.-..-..++.++++++|++.+.+.
T Consensus 116 ~~iavasSG~eds-vLlhl~~~~~----------~~ipV~flDTG~lFpETy~~~d~v~~~ygl~l~~~~ 174 (463)
T TIGR00424 116 NDIAIAFSGAEDV-ALIEYAHLTG----------RPFRVFSLDTGRLNPETYRFFDAVEKQYGIRIEYMF 174 (463)
T ss_pred CCEEEEeccHHHH-HHHHHHHHhC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEC
Confidence 3688999977775 4666777654 345555553 3322345788999999998766553
No 151
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=35.52 E-value=1.1e+02 Score=26.78 Aligned_cols=58 Identities=24% Similarity=0.367 Sum_probs=37.0
Q ss_pred CcHHH---HHHHHHHhCCcceEEEeChhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHhCCCeEEEeccCccccc
Q 011115 273 PDLKY---AKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (493)
Q Consensus 273 ~d~~~---A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~ltG~GgDelf 349 (493)
.|.+. |..+.+.+|++++...++.. .+|+ .++..++.+++.|++|++.|-||-.-+
T Consensus 13 SD~~~mk~Aa~~L~~fgi~ye~~VvSAH-------------RTPe--------~m~~ya~~a~~~g~~viIAgAGgAAHL 71 (162)
T COG0041 13 SDWDTMKKAAEILEEFGVPYEVRVVSAH-------------RTPE--------KMFEYAEEAEERGVKVIIAGAGGAAHL 71 (162)
T ss_pred chHHHHHHHHHHHHHcCCCeEEEEEecc-------------CCHH--------HHHHHHHHHHHCCCeEEEecCcchhhc
Confidence 45544 45566778888666554422 1222 234456778889999999999986655
Q ss_pred cC
Q 011115 350 GG 351 (493)
Q Consensus 350 gG 351 (493)
-|
T Consensus 72 PG 73 (162)
T COG0041 72 PG 73 (162)
T ss_pred ch
Confidence 44
No 152
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=33.93 E-value=25 Score=37.77 Aligned_cols=47 Identities=26% Similarity=0.224 Sum_probs=39.0
Q ss_pred ccccccCceeccccCChHHHHHHHcCCccccccCCCCCCcchHHHHHhhc
Q 011115 385 KSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFD 434 (493)
Q Consensus 385 r~~~~~gie~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~iLR~a~~ 434 (493)
+ +|+.++|.|+||+|. ++++.+||.+.|...+.+..+-|...+....
T Consensus 419 ~-~m~~~le~Rvpf~~~--~~l~~~i~~~~K~~~~~gk~~lr~~~~~~~p 465 (542)
T COG0367 419 R-SMAKKLERRVPFSDG--VELPEEIPWREKIAFGYGKGILRIAYEKILP 465 (542)
T ss_pred h-hhhhhhheecccccc--hhhHhhCChhhhhhcCCcchhhHhhhhccCc
Confidence 7 899999999999999 9999999999999865444456666666555
No 153
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=24.56 E-value=7.5e+02 Score=25.09 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHHHHhhccCcceEEEecCCcchhHHHHHHHHHh
Q 011115 206 DPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHL 249 (493)
Q Consensus 206 ~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~ 249 (493)
+...|.+.|+..+........|| |.=+||+|-...+-...+..
T Consensus 52 Y~~~~~~~L~~~L~~~~~~gIkv-I~NaGg~np~~~a~~v~eia 94 (362)
T PF07287_consen 52 YAPDFVRDLRPLLPAAAEKGIKV-ITNAGGLNPAGCADIVREIA 94 (362)
T ss_pred chHHHHHHHHHHHHHHHhCCCCE-EEeCCCCCHHHHHHHHHHHH
Confidence 44455556655555555566666 44588988877655555544
No 154
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=23.03 E-value=94 Score=32.07 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=23.8
Q ss_pred EEEEEEEcCCCCch-HHHHHHHHHHHhhhccCCCC
Q 011115 2 CGILAVLGCSDDSQ-AKRVRVLELSRRLKHRGPDW 35 (493)
Q Consensus 2 cGI~G~~~~~~~~~-~~~~~~~~~~~~l~~RGpd~ 35 (493)
|||--+.+.++.+. ...+....|+..|.|||-.+
T Consensus 1 CGvG~va~~~g~~sh~iv~~al~~L~~m~HRGa~~ 35 (413)
T cd00713 1 CGVGFVANIDGKPSHDIVQDALEALERMEHRGGVG 35 (413)
T ss_pred CeEEEEEECCCCchHHHHHHHHHHHhhCcCCCccc
Confidence 99977777776543 23445667888999998644
No 155
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=21.58 E-value=3.4e+02 Score=26.08 Aligned_cols=57 Identities=14% Similarity=-0.039 Sum_probs=29.0
Q ss_pred EEEec----CCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCCcHHHHHHHHHHhCCcceE
Q 011115 229 GVLLS----GGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHE 291 (493)
Q Consensus 229 ~v~LS----GGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~d~~~A~~va~~lg~~~~~ 291 (493)
++++| +|.|+...+.+++...++. +.++...-....+.+-....-.+|+.||+++-.
T Consensus 84 avli~d~~~~g~D~~~tA~~La~ai~~~------~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt 144 (256)
T PRK03359 84 LIVVIDDQFEQALPQQTASALAAAAQKA------GFDLILCGDGSSDLYAQQVGLLVGEILNIPAIN 144 (256)
T ss_pred EEEEecCcccCcCHHHHHHHHHHHHHHh------CCCEEEEcCccccCCCCcHHHHHHHHhCCCcee
Confidence 45555 4678777777666655431 112211111111222334566778888877554
No 156
>PLN02360 probable 6-phosphogluconolactonase
Probab=20.92 E-value=84 Score=30.33 Aligned_cols=32 Identities=19% Similarity=0.111 Sum_probs=22.0
Q ss_pred CcHHHHHHHHHHHHHHhhccCcceEEEecCCc
Q 011115 205 YDPLVLRQAFENAVIKRLMTDVPFGVLLSGGL 236 (493)
Q Consensus 205 ~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGl 236 (493)
+..+.+.+.+.+.++..+.....+++.||||-
T Consensus 21 el~~~~a~~i~~~~~~a~~~~~~~~lalsGGS 52 (268)
T PLN02360 21 ELSTDLAEYIAELSEASVKERGVFAIALSGGS 52 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEEECCCC
Confidence 33455556666666665666678999999994
No 157
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=20.90 E-value=5.2e+02 Score=21.85 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=39.7
Q ss_pred CcceEEEecCCcchhHHHHHHHHHhcccccccccCCcceeeeeccCCCC-cHHHHHHHHHHhCCcceEEEeChhhhHHHH
Q 011115 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP-DLKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (493)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~~~~~t~~~~~~~-d~~~A~~va~~lg~~~~~~~~~~~~~~~~l 303 (493)
..+.-+++|.|-|+......+.... + ..+..+++++.... .....+++|+..|-....+..+.+++.+.+
T Consensus 99 ~~~~iv~iTDG~~~~~~~~~~~~~~-~--------~~i~i~~v~~~~~~~~~~~l~~la~~tgG~~~~~~~~~~~l~~~~ 169 (172)
T PF13519_consen 99 RRRAIVLITDGEDNSSDIEAAKALK-Q--------QGITIYTVGIGSDSDANEFLQRLAEATGGRYFHVDNDPEDLDDAF 169 (172)
T ss_dssp EEEEEEEEES-TTHCHHHHHHHHHH-C--------TTEEEEEEEES-TT-EHHHHHHHHHHTEEEEEEE-SSSHHHHHHH
T ss_pred CceEEEEecCCCCCcchhHHHHHHH-H--------cCCeEEEEEECCCccHHHHHHHHHHhcCCEEEEecCCHHHHHHHH
Confidence 3457799999998865555554433 2 34666666554332 346788888888765444322444444433
Done!