BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011116
(493 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 296 bits (757), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 176/439 (40%), Positives = 260/439 (59%), Gaps = 21/439 (4%)
Query: 57 GVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSYKLP-----SNLRTILMDSP----- 106
G +I+ ANP S+ +E++ + S+ + + K+ S+++ + +DS
Sbjct: 98 GAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCL 157
Query: 107 EFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHV 166
F L +E+ A + + D A+ YSSGTTG KGV+L+H +I +A
Sbjct: 158 HFSELTQADENEA----PQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVA---QQ 210
Query: 167 TEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASK-GETLVFMERFDFEKMLKAVENY 225
+ +PN V LPMFH++ ++ + G ++ M +F+ +L +E Y
Sbjct: 211 VDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKY 270
Query: 226 RVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGY 285
+V+ PV PP++++ S DK+DLSSL+++ GGAPLGKE+ + KFP + QGY
Sbjct: 271 KVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGY 330
Query: 286 GLTETGGAGSRVIGPDEAE---RHGSVGRLAELMEAKIVDPATGEALPPGQKGELWLRGP 342
G+TE G + + + + G+ G + E KIVDP TG +LP Q GE+ +RG
Sbjct: 331 GMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGD 390
Query: 343 TIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELE 402
IMKGY+ D +ATS T+ EGWL TGD+ Y D + LFIVDRLKELIKYK +QV P ELE
Sbjct: 391 QIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELE 450
Query: 403 HLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVAPYKKIRRV 462
LL ++PEI+DAAV+ DE+AG++P+AFVV+ S TE EI +I+KQV YK+I+RV
Sbjct: 451 ALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRV 510
Query: 463 AFINSIPKSTAGKILRREL 481
FI +IPK+ +GKILR+ L
Sbjct: 511 FFIEAIPKAPSGKILRKNL 529
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 284 bits (727), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 172/459 (37%), Positives = 254/459 (55%), Gaps = 25/459 (5%)
Query: 54 LSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSH-------TSYKLPSNLRTILMDSP 106
L +GV ++P N + + E+ + + +S+P+I F + KLP + +++DS
Sbjct: 130 LFIGVGVAPTNDIYNERELYNSLSISQPTIVFCSKRALQKILGVQKKLPIIQKIVILDSR 189
Query: 107 E-FISLLNQNEDVADFANSNMTVYQSDP---------AAILYSSGTTGKVKGVLLSHLNV 156
E ++ + + + Y P A I+ SSG+TG KGV L+H N
Sbjct: 190 EDYMGKQSMYSFIESHLPAGFNEYDYIPDSFDRETATALIMNSSGSTGLPKGVELTHKN- 248
Query: 157 IAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFMERFDFE 216
I + H + N+ P + +P H FG F + + G +V M RF+ E
Sbjct: 249 --ICVRFSHCRDPVFGNQIIPDTAI-LTVIPFHHGFGMFTTLGYLTCGFRIVLMYRFEEE 305
Query: 217 KMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKF 276
L+++++Y++ + P L F S L DKYDLS+L + GGAPL KEV ++F
Sbjct: 306 LFLRSLQDYKIQSALLVPTLFSFFAKSTLVDKYDLSNLHEIASGGAPLAKEVGEAVAKRF 365
Query: 277 PNVEIRQGYGLTETGGAGSRVIGP-DEAERHGSVGRLAELMEAKIVDPATGEALPPGQKG 335
IRQGYGLTET A +I P ++ G+ G++ AKIVD TG+ L Q+G
Sbjct: 366 KLPGIRQGYGLTETTSA--IIITPRGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRG 423
Query: 336 ELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQ 395
EL ++GP IMKGYV + +ATS + +GWL +GD+ Y+D +G+ FIVDRLK LIKYK YQ
Sbjct: 424 ELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQ 483
Query: 396 VPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVAP 455
VPP ELE +L +P I DA V PD +AG++P A VV + G +TE E+MD++A QV
Sbjct: 484 VPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAVVVLEEGKTMTEQEVMDYVAGQVTA 543
Query: 456 YKKIR-RVAFINSIPKSTAGKILRRELVTHAISGNLSKL 493
K++R V F++ +PK GKI R++ + G SKL
Sbjct: 544 SKRLRGGVKFVDEVPKGLTGKIDARKIREILMMGKKSKL 582
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 280 bits (716), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 168/446 (37%), Positives = 252/446 (56%), Gaps = 24/446 (5%)
Query: 54 LSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSH------TSYKLPSNLRTI-LMDSP 106
L +GV ++P N + + E+ H + +SKP+I F++ T K + ++TI ++DS
Sbjct: 98 LFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSK 157
Query: 107 ------EFISLLNQNEDVADFANSNMTVYQSDP----AAILYSSGTTGKVKGVLLSHLNV 156
+ + + F S+ + D A I+ SSG+TG KGV L+H N
Sbjct: 158 VDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHEN- 216
Query: 157 IAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFMERFDFE 216
I+ + H + N+ P V +P H FG F + G +V + +FD E
Sbjct: 217 --IVTRFSHARDPIYGNQVSPGTAV-LTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEE 273
Query: 217 KMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKF 276
LK +++Y+ T + + P L S+L +KYDLS+L + GGAPL KEV +F
Sbjct: 274 TFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRF 333
Query: 277 PNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIVDPATGEALPPGQKGE 336
+RQGYGLTET A +I P+ ++ G+ G++ L +AK++D T ++L P ++GE
Sbjct: 334 NLPGVRQGYGLTETTSA--IIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGE 391
Query: 337 LWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQV 396
+ ++GP +MKGYV + +AT E + EGWL TGD+ Y+D FIVDRLK LIKYK YQV
Sbjct: 392 VCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451
Query: 397 PPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVAPY 456
PP ELE +L +P I DA V PD AG++P A VV + G N+TE E+MD++A QV+
Sbjct: 452 PPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNA 511
Query: 457 KKIR-RVAFINSIPKSTAGKILRREL 481
K++R V F++ +PK GKI R +
Sbjct: 512 KRLRGGVRFVDEVPKGLTGKIDGRAI 537
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 280 bits (715), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 170/446 (38%), Positives = 254/446 (56%), Gaps = 24/446 (5%)
Query: 54 LSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSH------TSYKLPSNLRTI-LMDSP 106
L +GV ++P N + + E+ H + +SKP+I F++ T K + ++TI ++DS
Sbjct: 98 LFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSK 157
Query: 107 E-------FISLLNQNEDVADFANSNMTV---YQSDPAAILYSSGTTGKVKGVLLSHLNV 156
+ + +N A+S TV + A I+ SSG+TG KGV L+H N
Sbjct: 158 VDYRGYQCLDTFIKRNTPPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHEN- 216
Query: 157 IAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFMERFDFE 216
I+ + H + N+ P V +P H FG F + G +V + +FD E
Sbjct: 217 --IVTRFSHARDPIYGNQVSPGTAV-LTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEE 273
Query: 217 KMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKF 276
LK +++Y+ T + + P L S+L +KYDLS+L + GGAPL KEV +F
Sbjct: 274 TFLKTLQDYKCTNVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRF 333
Query: 277 PNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIVDPATGEALPPGQKGE 336
+RQGYGLTET A +I P+ ++ G+ G++ L +AK++D T ++L P ++GE
Sbjct: 334 NLPGVRQGYGLTETTSA--IIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGE 391
Query: 337 LWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQV 396
+ ++GP +MKGYV + +AT E + EGWL TGD+ Y+D FIVDRLK LIKYK YQV
Sbjct: 392 VCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451
Query: 397 PPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVAPY 456
PP ELE +L +P I DA V PD AG++P A VV + G N+TE E+MD++A QV+
Sbjct: 452 PPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNA 511
Query: 457 KKIR-RVAFINSIPKSTAGKILRREL 481
K++R V F++ +PK GKI R +
Sbjct: 512 KRLRGGVRFVDEVPKGLTGKIDGRAI 537
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 280 bits (715), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 168/446 (37%), Positives = 252/446 (56%), Gaps = 24/446 (5%)
Query: 54 LSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSH------TSYKLPSNLRTI-LMDSP 106
L +GV ++P N + + E+ H + +SKP+I F++ T K + ++TI ++DS
Sbjct: 98 LFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSK 157
Query: 107 ------EFISLLNQNEDVADFANSNMTVYQSDP----AAILYSSGTTGKVKGVLLSHLNV 156
+ + + F S+ + D A I+ SSG+TG KGV L+H N
Sbjct: 158 VDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHEN- 216
Query: 157 IAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFMERFDFE 216
I+ + H + N+ P V +P H FG F + G +V + +FD E
Sbjct: 217 --IVTRFSHARDPIYGNQVSPGTAV-LTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEE 273
Query: 217 KMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKF 276
LK +++Y+ T + + P L S+L +KYDLS+L + GGAPL KEV +F
Sbjct: 274 TFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRF 333
Query: 277 PNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIVDPATGEALPPGQKGE 336
+RQGYGLTET A +I P+ ++ G+ G++ L +AK++D T ++L P ++GE
Sbjct: 334 NLPGVRQGYGLTETTSA--IIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGE 391
Query: 337 LWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQV 396
+ ++GP +MKGYV + +AT E + EGWL TGD+ Y+D FIVDRLK LIKYK YQV
Sbjct: 392 VCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451
Query: 397 PPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVAPY 456
PP ELE +L +P I DA V PD AG++P A VV + G N+TE E+MD++A QV+
Sbjct: 452 PPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNA 511
Query: 457 KKIR-RVAFINSIPKSTAGKILRREL 481
K++R V F++ +PK GKI R +
Sbjct: 512 KRLRGGVRFVDEVPKGLTGKIDGRAI 537
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 278 bits (710), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 175/468 (37%), Positives = 255/468 (54%), Gaps = 41/468 (8%)
Query: 54 LSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATS-------HTSYKLPSNLRTILMDSP 106
L +GV ++PAN + + E+ + + +S+P++ F + + KLP + I+MDS
Sbjct: 96 LFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK 155
Query: 107 E----FISL-----------LNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLL 151
F S+ N+ + V + + + T+ A I+ SSG+TG KGV L
Sbjct: 156 TDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI-----ALIMNSSGSTGLPKGVAL 210
Query: 152 SHLNVIAIIAGYYHVTEETDPNEGPP--PHPVSFFTLPMFHVFGFFMLVRAASKGETLVF 209
H + DP G P +P H FG F + G +V
Sbjct: 211 PHRTACV------RFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVL 264
Query: 210 MERFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVT 269
M RF+ E L+++++Y++ + P L F S L DKYDLS+L + GGAPL KEV
Sbjct: 265 MYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVG 324
Query: 270 LKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIVDPATGEAL 329
++F IRQGYGLTET A +I P+ ++ G+VG++ EAK+VD TG+ L
Sbjct: 325 EAVAKRFHLPGIRQGYGLTETTSA--ILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTL 382
Query: 330 PPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELI 389
Q+GEL +RGP IM GYV + +AT+ + +GWL +GD+ Y+D + FIVDRLK LI
Sbjct: 383 GVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLI 442
Query: 390 KYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFI 449
KYK YQV P ELE +L +P I DA V PD++AG++P A VV + G +TE EI+D++
Sbjct: 443 KYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYV 502
Query: 450 AKQVAPYKKIR-RVAFINSIPKSTAGKILR---RELVTHAISGNLSKL 493
A QV KK+R V F++ +PK GK+ RE++ A G SKL
Sbjct: 503 ASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKGGKSKL 550
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 278 bits (710), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 175/468 (37%), Positives = 255/468 (54%), Gaps = 41/468 (8%)
Query: 54 LSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATS-------HTSYKLPSNLRTILMDSP 106
L +GV ++PAN + + E+ + + +S+P++ F + + KLP + I+MDS
Sbjct: 96 LFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK 155
Query: 107 E----FISL-----------LNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLL 151
F S+ N+ + V + + + T+ A I+ SSG+TG KGV L
Sbjct: 156 TDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI-----ALIMNSSGSTGLPKGVAL 210
Query: 152 SHLNVIAIIAGYYHVTEETDPNEGPP--PHPVSFFTLPMFHVFGFFMLVRAASKGETLVF 209
H + DP G P +P H FG F + G +V
Sbjct: 211 PHRTACV------RFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVL 264
Query: 210 MERFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVT 269
M RF+ E L+++++Y++ + P L F S L DKYDLS+L + GGAPL KEV
Sbjct: 265 MYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVG 324
Query: 270 LKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIVDPATGEAL 329
++F IRQGYGLTET A +I P+ ++ G+VG++ EAK+VD TG+ L
Sbjct: 325 EAVAKRFHLPGIRQGYGLTETTSA--ILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTL 382
Query: 330 PPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELI 389
Q+GEL +RGP IM GYV + +AT+ + +GWL +GD+ Y+D + FIVDRLK LI
Sbjct: 383 GVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLI 442
Query: 390 KYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFI 449
KYK YQV P ELE +L +P I DA V PD++AG++P A VV + G +TE EI+D++
Sbjct: 443 KYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYV 502
Query: 450 AKQVAPYKKIR-RVAFINSIPKSTAGKILR---RELVTHAISGNLSKL 493
A QV KK+R V F++ +PK GK+ RE++ A G SKL
Sbjct: 503 ASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKGGKSKL 550
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 277 bits (709), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 175/468 (37%), Positives = 255/468 (54%), Gaps = 41/468 (8%)
Query: 54 LSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATS-------HTSYKLPSNLRTILMDSP 106
L +GV ++PAN + + E+ + + +S+P++ F + + KLP + I+MDS
Sbjct: 101 LFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK 160
Query: 107 E----FISL-----------LNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLL 151
F S+ N+ + V + + + T+ A I+ SSG+TG KGV L
Sbjct: 161 TDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI-----ALIMNSSGSTGLPKGVAL 215
Query: 152 SHLNVIAIIAGYYHVTEETDPNEGPP--PHPVSFFTLPMFHVFGFFMLVRAASKGETLVF 209
H + DP G P +P H FG F + G +V
Sbjct: 216 PHRTACV------RFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVL 269
Query: 210 MERFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVT 269
M RF+ E L+++++Y++ + P L F S L DKYDLS+L + GGAPL KEV
Sbjct: 270 MYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVG 329
Query: 270 LKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIVDPATGEAL 329
++F IRQGYGLTET A +I P+ ++ G+VG++ EAK+VD TG+ L
Sbjct: 330 EAVAKRFHLPGIRQGYGLTETTSA--ILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTL 387
Query: 330 PPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELI 389
Q+GEL +RGP IM GYV + +AT+ + +GWL +GD+ Y+D + FIVDRLK LI
Sbjct: 388 GVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLI 447
Query: 390 KYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFI 449
KYK YQV P ELE +L +P I DA V PD++AG++P A VV + G +TE EI+D++
Sbjct: 448 KYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYV 507
Query: 450 AKQVAPYKKIR-RVAFINSIPKSTAGKILR---RELVTHAISGNLSKL 493
A QV KK+R V F++ +PK GK+ RE++ A G SKL
Sbjct: 508 ASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKGGKSKL 555
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 275 bits (704), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 162/450 (36%), Positives = 254/450 (56%), Gaps = 21/450 (4%)
Query: 57 GVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSYKLP-----SNLRTILMDSPEFISL 111
G + ANP + +E++ Q + S + + K+ + + +D E + +
Sbjct: 137 GATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPI 196
Query: 112 ---------LNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAG 162
L Q+ A ++ + D A+ YSSGTTG KGV+L+H ++ +A
Sbjct: 197 PEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVA- 255
Query: 163 YYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASK-GETLVFMERFDFEKMLKA 221
+ +PN V LPMFH++ ++ + G ++ M +F+ +L+
Sbjct: 256 --QQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLEL 313
Query: 222 VENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEI 281
++ +VT P+ PP+++A S T+KYDLSS++++ G APLGKE+ KFPN ++
Sbjct: 314 IQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKL 373
Query: 282 RQGYGLTETGGAGSRVIGPDEAE---RHGSVGRLAELMEAKIVDPATGEALPPGQKGELW 338
QGYG+TE G + +G + + G+ G + E KIVDP TG++L Q GE+
Sbjct: 374 GQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEIC 433
Query: 339 LRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPP 398
+RG IMKGY+ + AT+ET+ +GWL TGD+ D + LFIVDRLKELIKYK +QV P
Sbjct: 434 IRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAP 493
Query: 399 VELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVAPYKK 458
ELE LL +P+I D AV+ +E AG++P+AFVV+ S ++E ++ F++KQV YK+
Sbjct: 494 AELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKR 553
Query: 459 IRRVAFINSIPKSTAGKILRRELVTHAISG 488
I +V F SIPK+ +GKILR++L +G
Sbjct: 554 INKVFFTESIPKAPSGKILRKDLRAKLANG 583
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 273 bits (698), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 173/466 (37%), Positives = 255/466 (54%), Gaps = 37/466 (7%)
Query: 54 LSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATS-------HTSYKLPSNLRTILMDSP 106
L +GV ++PAN + E+ + + +S+P++ F + + KLP + I+MDS
Sbjct: 101 LFIGVAVAPANDCYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK 160
Query: 107 E----FISL-----------LNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLL 151
F S+ N+ + V + + + T+ A I+ SSG+TG KGV L
Sbjct: 161 TDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI-----ALIMNSSGSTGLPKGVAL 215
Query: 152 SHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFME 211
H A+ + H + N+ P + +P H FG F + G +V M
Sbjct: 216 PHR---ALAVRFSHARDPIFGNQIAPDTAI-LSVVPFHHGFGMFTTLGYLISGFRVVLMY 271
Query: 212 RFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLK 271
RF+ E L+++++Y++ + P L S L DKYDLS+L + GGAPL KEV
Sbjct: 272 RFEEELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEA 331
Query: 272 FKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIVDPATGEALPP 331
++F IRQGYGLTET A +I P ++ G+VG++ EAK+VD TG+ L
Sbjct: 332 VAKRFHLPGIRQGYGLTETTSA--ILITPKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGV 389
Query: 332 GQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKY 391
Q+GEL +RGP IM GYV + +AT+ + +GWL +GD+ Y+D + FIVDRLK LIKY
Sbjct: 390 NQRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKY 449
Query: 392 KAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAK 451
K QV P ELE +L +P I DA V PD++AG++P A VV + G +TE EI+D++A
Sbjct: 450 KGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVAS 509
Query: 452 QVAPYKKIR-RVAFINSIPKSTAGKILR---RELVTHAISGNLSKL 493
QV KK+R V F++ +PK GK+ RE++ A G SKL
Sbjct: 510 QVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKGGKSKL 555
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 168 bits (425), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 133/464 (28%), Positives = 217/464 (46%), Gaps = 41/464 (8%)
Query: 51 FSLLSLGVVISPANPLSSTSEVSHQIQLSKPS--IAFATSHTSYK---LPSNLRTILMDS 105
++L + P NP + E+ H + S+ + + + + ++K + + + +
Sbjct: 95 YALWRVAATPVPINPXYKSFELEHILNDSEATTLVVHSXLYENFKPVLEKTGVERVFVVG 154
Query: 106 PEFISLLN-QNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNV------IA 158
E SL + DF N + + D A I Y+ GTTG KGV L+H N+ +A
Sbjct: 155 GEVNSLSEVXDSGSEDFENVKVNP-EEDVALIPYTGGTTGXPKGVXLTHFNLAANALQLA 213
Query: 159 IIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFMERFDFEKM 218
+ G H D G P FH F ++ + G V F+ E +
Sbjct: 214 VATGLSH----XDTIVG---------CXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXL 260
Query: 219 LKAVENYRVTYMPVSPPLIVAFINS--KLTDKYDLSSLQLLGCGGAPLGKEVTLKF---- 272
+ +E Y+ T+ PP + +N+ YD S L++ G P+ + K
Sbjct: 261 AENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLA 320
Query: 273 KEKFPNVEIR--QGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIVDPATGEALP 330
EK N +R Q +G TE + P ++ + G +E K++ G L
Sbjct: 321 AEKCNNPRLRHNQIWGXTEACPXVT-TNPPLRLDKSTTQGVPXSDIELKVISLEDGRELG 379
Query: 331 PGQKGELWLRGPTIMKGYVGDDKATSETV----HSEGWLKTGDLCYFDSNGFLFIVDRLK 386
G+ GE+ +RGP I KGY +K E + +TGD+ + D GFL DR+K
Sbjct: 380 VGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVK 439
Query: 387 ELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPG--SNITEAE 444
E+IKYK Y + P ELE LL + + D AVI PDEEAG++P AF+V KP + E +
Sbjct: 440 EVIKYKGYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEED 499
Query: 445 IMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRRELVTHAISG 488
I++++ ++++ YK++R V F+ +P++ +GK+LRR L G
Sbjct: 500 IIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEG 543
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 161 bits (408), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 126/447 (28%), Positives = 212/447 (47%), Gaps = 33/447 (7%)
Query: 48 VLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFAT-------SHTSYKLPSNLRT 100
VLY + + G V P N + E+ + I ++P I + + K+ + + T
Sbjct: 68 VLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVET 127
Query: 101 ILMDSPEFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIA-- 158
+ P+ L A A + + D AAILY+SGTTG+ KG LSH N+ +
Sbjct: 128 L---GPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAXLSHDNLASNS 184
Query: 159 -IIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFML--VRAASKGETLVFMERFDF 215
+ Y+ T P V LP++H G F+ V ++G + +F+ +FD
Sbjct: 185 LTLVDYWRFT----------PDDVLIHALPIYHTHGLFVASNVTLFARG-SXIFLPKFDP 233
Query: 216 EKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEK 275
+K+L R T + P + S K +L G APL + ++ K
Sbjct: 234 DKILDLXA--RATVLXGVPTFYTRLLQSPRLTKETTGHXRLFISGSAPLLADTHREWSAK 291
Query: 276 FPNVEIRQGYGLTETGGAGSRVIGPDEAER-HGSVGRLAELMEAKIVDPATGEALPPGQK 334
+ + + YG TET S P + +R G+VG + A++ DP TG+ LP G
Sbjct: 292 TGHAVLER-YGXTETNXNTSN---PYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDI 347
Query: 335 GELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAY 394
G + ++GP + KGY + T +G+ TGDL D G++ I+ R K+L+ +
Sbjct: 348 GXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGF 407
Query: 395 QVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVA 454
V P E+E + + P + ++AVI P + G+ A VVR G+ I EA+++ + Q+A
Sbjct: 408 NVYPKEIESEIDAXPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLA 467
Query: 455 PYKKIRRVAFINSIPKSTAGKILRREL 481
+K ++V F++ +P++T GK+ + L
Sbjct: 468 KFKXPKKVIFVDDLPRNTXGKVQKNVL 494
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/355 (30%), Positives = 172/355 (48%), Gaps = 19/355 (5%)
Query: 131 SDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFH 190
+D I++++ G+ +G L+S N++ + T+ + V+ LP+FH
Sbjct: 160 ADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEAD-------VNLGMLPLFH 212
Query: 191 VFGFFMLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYD 250
V G +++ G V +FD + + +E ++VT M P++ ++ +
Sbjct: 213 VTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQ-- 270
Query: 251 LSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVG 310
L+SL+ + P E +F+ PN +G +ET G + P +R S G
Sbjct: 271 LASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLST--FAPYR-DRPKSAG 324
Query: 311 RLAELMEAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDL 370
R +VD A LPPG+ GE+ LRGPT+ KGY + AT + GW TGD+
Sbjct: 325 RPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRN-GWHHTGDM 382
Query: 371 CYFDSNGFLFIVDRL--KELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIP 428
FD++G+LF R KELIK V P E+E L +P IADA VI PD + +
Sbjct: 383 GRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAI 442
Query: 429 MAFVVRKPGSNITEAEIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRRELVT 483
A V KPG +I + +F+A +A YKK + V F+ ++PK G I R + T
Sbjct: 443 KAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKT 497
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 176/346 (50%), Gaps = 13/346 (3%)
Query: 136 ILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFF 195
I+Y+SGTTG KGV+ +H +V + + + + + LPMFHV
Sbjct: 175 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDR-------LLLPLPMFHVAALT 227
Query: 196 MLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQ 255
++ +A +G TL+ M +FD K+ + RV P ++ + D +
Sbjct: 228 TVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFR 287
Query: 256 LLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAEL 315
GGAP+ + + + K N+E+ QGY LTE+ G G+ ++ D + GS GR A +
Sbjct: 288 YFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGR-ATM 344
Query: 316 MEAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDS 375
V G G+ GE+ ++ ++K Y +AT + + GW +TGD+ D
Sbjct: 345 FTDVAVRGDDGVIREHGE-GEVVIKSDILLKEYWNRPEATRDAFDN-GWFRTGDIGEIDD 402
Query: 376 NGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRK 435
G+L+I DRLK++I V P E+E ++ P +++ AVI PDE+ G+I A VV
Sbjct: 403 EGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVAD 462
Query: 436 PGSNITEAEIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRREL 481
+ ++E +I+++ ++A YK ++V F +IP++ GKIL+ L
Sbjct: 463 Q-NEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVL 507
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 124/458 (27%), Positives = 217/458 (47%), Gaps = 42/458 (9%)
Query: 50 YFSLLSLGVVISPANPLSSTSEVSH-------QIQLSKPSIAFATSHTSYKLPSNLRTIL 102
YF++ +G V+ ANP S E+++ ++ L P++ +L + ++
Sbjct: 89 YFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVV 148
Query: 103 MDSPEFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVI--AII 160
MD L E + + A+ + V + + Y++GTTG KGV+ SH ++ ++
Sbjct: 149 MDEKAPEGYLAYEEALGEEADP-VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLA 207
Query: 161 AGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVF-MERFDFEKML 219
A T ++ + V +PMFHV + + A G V R D ++
Sbjct: 208 ASLVDGTALSEKD-------VVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLV 260
Query: 220 KAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNV 279
+ + VT+ P + +A + + + L +L+ L GG+ + + +F+ V
Sbjct: 261 ELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERM--GV 318
Query: 280 EIRQGYGLTETGGA------GSRVIGPDEAER---HGSVGRLAELMEAKIVD------PA 324
E+RQGYGLTET S + E E+ G L+ ++ D P
Sbjct: 319 EVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPK 378
Query: 325 TGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDR 384
G+AL GE+ L+GP I GY G+++AT + +G+ +TGD+ +D G++ I DR
Sbjct: 379 DGKAL-----GEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDR 433
Query: 385 LKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAE 444
LK+LIK + V+LE+ L +P++ +AAV+ P + + P+A VV + G T E
Sbjct: 434 LKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEKPTPEE 492
Query: 445 IMDFIAKQ-VAPYKKIRRVAFINSIPKSTAGKILRREL 481
+ + + K A ++ F IP+++AGK L+R L
Sbjct: 493 LNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRAL 530
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 116/439 (26%), Positives = 197/439 (44%), Gaps = 27/439 (6%)
Query: 48 VLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFAT----SHTSYKLPSNLRTILM 103
VLY + + G V P N + E+ + I ++P I + T+
Sbjct: 68 VLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVET 127
Query: 104 DSPEFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIA---II 160
P+ L A A + + D AAILY+SGTTG+ G +LSH N+ + +
Sbjct: 128 LGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTL 187
Query: 161 AGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFML--VRAASKGETLVFMERFDFEKM 218
Y+ T P V LP++H G F+ V ++G +++F+ FD + +
Sbjct: 188 VDYWRFT----------PDDVLIHALPIYHTHGLFVASNVTLFARG-SMIFLPXFDPDXI 236
Query: 219 LKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPN 278
L + R T + P + S ++L G APL + ++ +
Sbjct: 237 LDLMA--RATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGH 294
Query: 279 VEIRQGYGLTETGGAGSRVIGPDEAER-HGSVGRLAELMEAKIVDPATGEALPPGQKGEL 337
+ + YG+TET S P + +R G+VG + A++ DP TG LP G G +
Sbjct: 295 AVLER-YGMTETNMNTSN---PYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMI 350
Query: 338 WLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVP 397
+ GP + GY + T +G+ TGDL D G++ I+ R +L+ + V
Sbjct: 351 EVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVY 410
Query: 398 PVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVAPYK 457
P E+E + + P + ++AVI P + G+ A VVR G+ I EA+++ + Q+A +
Sbjct: 411 PXEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDXGATIDEAQVLHGLDGQLAXFX 470
Query: 458 KIRRVAFINSIPKSTAGKI 476
V F++ +P++T G +
Sbjct: 471 MPXXVIFVDDLPRNTMGAV 489
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 177/360 (49%), Gaps = 28/360 (7%)
Query: 125 NMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFF 184
N + D A+I+++SGTTG K V + N A G + G
Sbjct: 157 NTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIG-------CKESLGFDRDTNWLS 209
Query: 185 TLPMFHVFGFFMLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINSK 244
LP++H+ G +L+RA +G T+ +++F+ E++L ++N R+T++ + P + +
Sbjct: 210 VLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQG 269
Query: 245 LTDKYDLSSLQLLGCGGAPLGK---EVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPD 301
L + Y+L + L GGA L E L++ N+ I +G+TET
Sbjct: 270 LHEPYNLQKILL---GGAKLSATMIETALQY-----NLPIYNSFGMTETCSQFLTATPEM 321
Query: 302 EAERHGSVGRLAELMEAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHS 361
R +VG + ++ KI +P GEL ++G +M GY+ T
Sbjct: 322 LHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTG--TFE 373
Query: 362 EGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPD 421
G+ TGD+ D G++ I DR K+LI + P ++E + P I+DA + +PD
Sbjct: 374 NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPD 433
Query: 422 EEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRREL 481
+ GQ+P + V + S+I++A+++ +++K +A YK + ++++P ++ GK+ R +L
Sbjct: 434 DTWGQVPKLYFVSE--SDISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 491
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 114/439 (25%), Positives = 195/439 (44%), Gaps = 27/439 (6%)
Query: 48 VLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFAT----SHTSYKLPSNLRTILM 103
VLY + + G V P N + E+ + I ++P I + T+
Sbjct: 68 VLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVET 127
Query: 104 DSPEFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIA---II 160
P+ L A A + + D AAILY+SGTTG+ G +LSH N+ + +
Sbjct: 128 LGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTL 187
Query: 161 AGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFML--VRAASKGETLVFMERFDFEKM 218
Y+ T P V LP++H G F+ V ++G +++F+ FD + +
Sbjct: 188 VDYWRFT----------PDDVLIHALPIYHTHGLFVASNVTLFARG-SMIFLPXFDPDXI 236
Query: 219 LKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPN 278
L + R T + P + S ++L G APL + ++ +
Sbjct: 237 LDLMA--RATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGH 294
Query: 279 VEIRQGYGLTETGGAGSRVIGPDEAER-HGSVGRLAELMEAKIVDPATGEALPPGQKGEL 337
+ + YG+TET S P + +R G+VG + A++ DP TG LP G G +
Sbjct: 295 AVLER-YGMTETNMNTSN---PYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMI 350
Query: 338 WLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVP 397
+ GP + GY + T +G+ TGDL D G++ I+ R +L+ + V
Sbjct: 351 EVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVY 410
Query: 398 PVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVAPYK 457
P E+E + + P + ++AVI P + G+ AFVV +EA+++ + Q+A +
Sbjct: 411 PXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLXREFAPSEAQVLHGLDGQLAXFX 470
Query: 458 KIRRVAFINSIPKSTAGKI 476
V F++ +P++T G +
Sbjct: 471 MPXXVIFVDDLPRNTMGAV 489
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 115/442 (26%), Positives = 194/442 (43%), Gaps = 30/442 (6%)
Query: 48 VLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFAT----SHTSYKLPSNLRTILM 103
VLY + + G V P N + E+ + I ++P I + T+
Sbjct: 68 VLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVET 127
Query: 104 DSPEFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIA---II 160
P+ L A A + + D AAILY+SGTTG+ G +LSH N+ + +
Sbjct: 128 LGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTL 187
Query: 161 AGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFML--VRAASKGETLVFMERFDFEKM 218
Y+ T P V LP++H G F+ V ++G +++F+ FD + +
Sbjct: 188 VDYWRFT----------PDDVLIHALPIYHTHGLFVASNVTLFARG-SMIFLPXFDPDXI 236
Query: 219 LKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPN 278
L + R T + P + S ++L G APL + ++ +
Sbjct: 237 LDLMA--RATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGH 294
Query: 279 VEIRQGYGLTETGGAGSRVIGPDEAER-HGSVGRLAELMEAKIVDPATGEALPPGQKGEL 337
+ + YG+TET S P + +R G+VG + A++ DP TG LP G G +
Sbjct: 295 AVLER-YGMTETNMNTSN---PYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMI 350
Query: 338 WLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVP 397
+ GP + GY + T +G+ TGDL D G++ I+ R +L+ + V
Sbjct: 351 EVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVY 410
Query: 398 PVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRK---PGSNITEAEIMDFIAKQVA 454
P E+E + + P + ++AVI P + G+ AFVV S I E+ F+ ++A
Sbjct: 411 PXEIESEIDAMPGVVESAVIGVPHADFGEGVTAFVVLXREFAPSEILAEELXAFVXDRLA 470
Query: 455 PYKKIRRVAFINSIPKSTAGKI 476
+ V F++ +P++T G +
Sbjct: 471 XFXMPXXVIFVDDLPRNTMGAV 492
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 115/441 (26%), Positives = 199/441 (45%), Gaps = 56/441 (12%)
Query: 62 PANPLSSTSEVSHQIQLSKPSIAFATSHTSYKLPSNLRTILMDSPEFISLLNQNEDVADF 121
P NP S E++H + S PS+ A +LP L + + + ED AD
Sbjct: 97 PLNPKSGDKELAHILSDSAPSLVLAPPDA--ELPPALGALERVDVDVRARGAVPEDGAD- 153
Query: 122 ANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPV 181
DPA ++Y+SGTTG KG ++ + + + T + V
Sbjct: 154 --------DGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGED-------V 198
Query: 182 SFFTLPMFHVFGFFM-LVRAASKGETLVFMERFDFEKMLKAVEN------------YRVT 228
LP+FHV G + ++ +G ++ + RF E + + + +R+
Sbjct: 199 LVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELNDGATMLFGVPTMYHRIA 258
Query: 229 -YMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIR---QG 284
+P P L A L+ +LL G A L + E+ R +
Sbjct: 259 ETLPADPELAKA-----------LAGARLLVSGSAAL----PVHDHERIAAATGRRVIER 303
Query: 285 YGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIV--DPATGEALPPGQKGELWLRGP 342
YG+TET + + D R G+VG +E ++V D AL GE+ +RGP
Sbjct: 304 YGMTET--LMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGP 361
Query: 343 TIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDR-LKELIKYKAYQVPPVEL 401
+ Y+ AT+ +G+ +TGD+ D +G++ IV R +LIK Y++ E+
Sbjct: 362 NLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEI 421
Query: 402 EHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITE-AEIMDFIAKQVAPYKKIR 460
E+ L +PE+ +AAV PD + G+ +A++V + + D +A ++AP+K+ R
Sbjct: 422 ENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPR 481
Query: 461 RVAFINSIPKSTAGKILRREL 481
V +++++P++ GKI++R L
Sbjct: 482 VVRYLDAVPRNDMGKIMKRAL 502
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 139/278 (50%), Gaps = 12/278 (4%)
Query: 211 ERFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTL 270
+RF+ + ML+ Y VT +PP I F+ + Y+ S+L+ G PL EV
Sbjct: 301 DRFEAKNMLEKASKYGVTTF-CAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEVFN 359
Query: 271 KFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIVDPATGEALP 330
+F E F +++ +G+G TET + P + GS+G+ + +++D G
Sbjct: 360 RFLE-FTGIKLMEGFGQTET--VVTIATFPWMEPKPGSIGKPTPGYKIELMD-RDGRLCE 415
Query: 331 PGQKGELWLR----GPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLK 386
G++GE+ + P + + G D +E +G+ TGD+ + D +G+L+ V R
Sbjct: 416 VGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRAD 475
Query: 387 ELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPG---SNITEA 443
++IK Y+V P E+E L +P + + A+ PD GQ+ A +V S+ +
Sbjct: 476 DIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKN 535
Query: 444 EIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRREL 481
E+ D + APYK R + F+ +PK+ +GKI R E+
Sbjct: 536 ELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEI 573
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 117/460 (25%), Positives = 214/460 (46%), Gaps = 39/460 (8%)
Query: 51 FSLLSLGVVISPANPLSSTSEVSHQIQLSKPS---IAFATSHTSY---------KLPSNL 98
F+L LG + A P +SE+++ + ++ + I A S Y KLP+ L
Sbjct: 93 FALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPT-L 151
Query: 99 RTILM--DSPEFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNV 156
+ I++ ++ EF+ L ED+ V SD A + S G+TG K + +H +
Sbjct: 152 KNIIVAGEAEEFLPL----EDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDY 207
Query: 157 IAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVF-----GFFMLVRAASKGETLVFME 211
I + V V LPM H + G ++ A G +V
Sbjct: 208 IYSLKRSVEVCWLDHST-------VYLAALPMAHNYPLSSPGVLGVLYA---GGRVVLSP 257
Query: 212 RFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLK 271
+ +E +VT + PPL + ++++ + + DLSSLQ+L GGA E +
Sbjct: 258 SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARR 317
Query: 272 FKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIVDPATGEALPP 331
K F ++Q +G+ E +R+ P+E + ++ E+++ D + + P
Sbjct: 318 VKAVF-GCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRD-VKP 375
Query: 332 GQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKY 391
G+ G L RGP ++GY ++ + + +G+ +TGD+ +G++ + R K+ I
Sbjct: 376 GETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINR 435
Query: 392 KAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAK 451
+V E+E+ L ++P + DAA++ PD+ G+ F++ + + AE+ F+ +
Sbjct: 436 GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAP-KAAELKAFLRE 494
Query: 452 Q-VAPYKKIRRVAFINSIPKSTAGKILRRELVTHAISGNL 490
+ +A YK RV F+ S P++ GK+ ++ L AIS L
Sbjct: 495 RGLAAYKIPDRVEFVESFPQTGVGKVSKKAL-REAISEKL 533
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 116/460 (25%), Positives = 208/460 (45%), Gaps = 39/460 (8%)
Query: 51 FSLLSLGVVISPANPLSSTSEVSHQIQLSKPS---IAFATSHTSY---------KLPSNL 98
F+L LG + A P +SE+++ + ++ + I A S Y KLP+ L
Sbjct: 93 FALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPT-L 151
Query: 99 RTILM--DSPEFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNV 156
+ I++ ++ EF+ L ED+ V SD A + S G+TG K + +H +
Sbjct: 152 KNIIVAGEAEEFLPL----EDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDY 207
Query: 157 IAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVF-----GFFMLVRAASKGETLVFME 211
I + V V LP H + G ++ A G +V
Sbjct: 208 IYSLKRSVEVCWLDHST-------VYLAALPXAHNYPLSSPGVLGVLYA---GGRVVLSP 257
Query: 212 RFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLK 271
+ +E +VT + PPL + ++ + + DLSSLQ+L GGA E +
Sbjct: 258 SPSPDDAFPLIEREKVTITALVPPLAXVWXDAASSRRDDLSSLQVLQVGGAKFSAEAARR 317
Query: 272 FKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIVDPATGEALPP 331
K F ++Q +G E +R+ P+E + + E+++ D + + P
Sbjct: 318 VKAVF-GCTLQQVFGXAEGLVNYTRLDDPEEIIVNTQGKPXSPYDESRVWDDHDRD-VKP 375
Query: 332 GQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKY 391
G+ G L RGP ++GY ++ + + +G+ +TGD+ +G++ + R K+ I
Sbjct: 376 GETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINR 435
Query: 392 KAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAK 451
+V E+E+ L ++P + DAA + PD+ G+ F++ + + AE+ F+ +
Sbjct: 436 GGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFIIPRDEAP-KAAELKAFLRE 494
Query: 452 Q-VAPYKKIRRVAFINSIPKSTAGKILRRELVTHAISGNL 490
+ +A YK RV F+ S P++ GK+ ++ L AIS L
Sbjct: 495 RGLAAYKIPDRVEFVESFPQTGVGKVSKKAL-REAISEKL 533
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 104/363 (28%), Positives = 167/363 (46%), Gaps = 33/363 (9%)
Query: 132 DPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHV 191
D A LYSSG+TGK KG + +H N+ Y+ P G + V F +F
Sbjct: 184 DIAFWLYSSGSTGKPKGTVHTHANL------YWTAELYAKPILGIAENDVVFSAAKLFFA 237
Query: 192 FGFFM-LVRAASKGETLVFM-ERFDFEKMLKAVENYRVTYMPVSPPLIVAFINS-KLTDK 248
+G L S G T + M ER + + + +R T P L + S L +
Sbjct: 238 YGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPAR 297
Query: 249 YDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTE------TGGAGSRVIGPDE 302
D++ +++ G L +E+ +F F EI G G TE + AG
Sbjct: 298 ADVA-IRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEMLHIFLSNRAG-------- 347
Query: 303 AERHGSVGRLAELMEAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSE 362
A +G+ GR E ++ D A G A+P G+ G+L+++GP+ Y + + + T E
Sbjct: 348 AVEYGTTGRPVPGYEIELRDEA-GHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGE 406
Query: 363 GWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDE 422
W+++GD NG R +++K V PVE+E +L + + +AAV+ +
Sbjct: 407 -WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV--D 463
Query: 423 EAGQIPM-AFVVRK---PGSNITEAEIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILR 478
G + AFVV K S I E+ F+ ++AP+K R + F++ +PK+ GKI R
Sbjct: 464 HGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQR 523
Query: 479 REL 481
+L
Sbjct: 524 FKL 526
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 96/369 (26%), Positives = 170/369 (46%), Gaps = 29/369 (7%)
Query: 131 SDPAAILYSSGTTGKVKGVLL------SHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFF 184
+ PA I Y+SGTTG K ++ S + ++ G H H V
Sbjct: 153 AQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGR-----------HNVVLG 201
Query: 185 TLPMFHVFGFF-MLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINS 243
+P++HV GFF +LV A + T V +E F L+ V+ +VT + +P + A +
Sbjct: 202 LMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAA 261
Query: 244 KLT--DKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPD 301
L SL+ + GA + V + P ++ GYG TE S +
Sbjct: 262 AAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NGYGTTE--AMNSLYMRQP 318
Query: 302 EAERHGSVGRLAELMEAKIVDPATGEALPPGQKGELWLRGP-TIMKGYVGDDKATSETVH 360
+ + G +E+ +I E + G++GEL + + GY+ +AT+E +
Sbjct: 319 KTGTEMAPGFFSEVRIVRI-GGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ 377
Query: 361 SEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYP 420
+GW +T D+ + G + I+ R+ ++I + P E+E +L + P + + VI
Sbjct: 378 -DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLA 436
Query: 421 DEEAGQIPMAFVVRKPGSNITEAEIMDFIAK--QVAPYKKIRRVAFINSIPKSTAGKILR 478
D+ GQ A VV + G ++ A+ +D + ++A +K+ +R ++ +PK+ K+LR
Sbjct: 437 DQRWGQSVTACVVPRLGETLS-ADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLR 495
Query: 479 RELVTHAIS 487
R+LV S
Sbjct: 496 RQLVQQVSS 504
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 108/464 (23%), Positives = 203/464 (43%), Gaps = 51/464 (10%)
Query: 48 VLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSYKLPS------NLRTI 101
++ + G++ P ++++ +++Q+SK A ++ + +LR
Sbjct: 114 LVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIK 173
Query: 102 LMDSPE-------FISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTG--KVKGVLLS 152
L+ S + F LLN+ A + + + +AI ++SGT+G K+ S
Sbjct: 174 LLVSEKSCDGWLNFKKLLNE----ASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS 229
Query: 153 HLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLP----MFHVFGFFMLVRAASKGETLV 208
L + A + + + +D +T+ + ++ M A +
Sbjct: 230 SLGLKAKMDAGWTGLQASD----------IMWTISDTGWILNILCSLMEPWALGACTFVH 279
Query: 209 FMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEV 268
+ +FD +LK + +Y + M + P++ + + Y LQ G L E
Sbjct: 280 LLPKFDPLVILKTLSSYPIKSM-MGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPE- 337
Query: 269 TLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIVDPATGEA 328
TL+ ++IR+ YG TETG + ++ + G +G A + +I+D G
Sbjct: 338 TLENWRAQTGLDIRESYGQTETGL--TCMVSKTMKIKPGYMGTAASCYDVQIIDD-KGNV 394
Query: 329 LPPGQKGELWLRGP-----TIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVD 383
LPPG +G++ +R I GYV + T+ + + WL GD D +G+ +
Sbjct: 395 LPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMG 453
Query: 384 RLKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPG------ 437
R ++I Y++ P E+E+ L +P + + AVI PD G++ AFVV
Sbjct: 454 RADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDP 513
Query: 438 SNITEAEIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRREL 481
+T+ E+ + APYK R++ F+ ++PK+ GKI R +L
Sbjct: 514 EQLTK-ELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKL 556
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 108/464 (23%), Positives = 203/464 (43%), Gaps = 51/464 (10%)
Query: 48 VLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSYKLPS------NLRTI 101
++ + G++ P ++++ +++Q+SK A ++ + +LR
Sbjct: 114 LVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIK 173
Query: 102 LMDSPE-------FISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTG--KVKGVLLS 152
L+ S + F LLN+ A + + + +AI ++SGT+G K+ S
Sbjct: 174 LLVSEKSCDGWLNFKKLLNE----ASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS 229
Query: 153 HLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLP----MFHVFGFFMLVRAASKGETLV 208
L + A + + + +D +T+ + ++ M A +
Sbjct: 230 SLGLKAKMDAGWTGLQASD----------IMWTISDTGWILNILCSLMEPWALGACTFVH 279
Query: 209 FMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEV 268
+ +FD +LK + +Y + M + P++ + + Y LQ G L E
Sbjct: 280 LLPKFDPLVILKTLSSYPIKSM-MGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPE- 337
Query: 269 TLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIVDPATGEA 328
TL+ ++IR+ YG TETG + ++ + G +G A + +I+D G
Sbjct: 338 TLENWRAQTGLDIRESYGQTETGL--TCMVSKTMKIKPGYMGTAASCYDVQIIDD-KGNV 394
Query: 329 LPPGQKGELWLRGP-----TIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVD 383
LPPG +G++ +R I GYV + T+ + + WL GD D +G+ +
Sbjct: 395 LPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMG 453
Query: 384 RLKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPG------ 437
R ++I Y++ P E+E+ L +P + + AVI PD G++ AFVV
Sbjct: 454 RADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDP 513
Query: 438 SNITEAEIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRREL 481
+T+ E+ + APYK R++ F+ ++PK+ GKI R +L
Sbjct: 514 EQLTK-ELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKL 556
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 169/369 (45%), Gaps = 29/369 (7%)
Query: 131 SDPAAILYSSGTTGKVKGVLL------SHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFF 184
+ PA I Y+SGTTG K ++ S + ++ G H H V
Sbjct: 153 AQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGR-----------HNVVLG 201
Query: 185 TLPMFHVFGFF-MLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINS 243
+P++HV GFF +LV A + T V +E F L+ V+ +VT + +P + A +
Sbjct: 202 LMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAA 261
Query: 244 KLT--DKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPD 301
L SL+ + GA + V + P ++ YG TE S +
Sbjct: 262 AAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NAYGTTE--AMNSLYMRQP 318
Query: 302 EAERHGSVGRLAELMEAKIVDPATGEALPPGQKGELWLRGP-TIMKGYVGDDKATSETVH 360
+ + G +E+ +I E + G++GEL + + GY+ +AT+E +
Sbjct: 319 KTGTEMAPGFFSEVRIVRI-GGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ 377
Query: 361 SEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYP 420
+GW +T D+ + G + I+ R+ ++I + P E+E +L + P + + VI
Sbjct: 378 -DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLA 436
Query: 421 DEEAGQIPMAFVVRKPGSNITEAEIMDFIAK--QVAPYKKIRRVAFINSIPKSTAGKILR 478
D+ GQ A VV + G ++ A+ +D + ++A +K+ +R ++ +PK+ K+LR
Sbjct: 437 DQRWGQSVTACVVPRLGETLS-ADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLR 495
Query: 479 RELVTHAIS 487
R+LV S
Sbjct: 496 RQLVQQVSS 504
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 169/369 (45%), Gaps = 29/369 (7%)
Query: 131 SDPAAILYSSGTTGKVKGVLL------SHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFF 184
+ PA I Y+SGTTG K ++ S + ++ G H H V
Sbjct: 153 AQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGR-----------HNVVLG 201
Query: 185 TLPMFHVFGFF-MLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINS 243
+P++HV GFF +LV A + T V +E F L+ V+ +VT + +P + A +
Sbjct: 202 LMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAA 261
Query: 244 KLT--DKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPD 301
L SL+ + GA + V + P ++ YG TE S +
Sbjct: 262 AAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI-YGTTE--AMNSLYMRQP 318
Query: 302 EAERHGSVGRLAELMEAKIVDPATGEALPPGQKGELWLRGP-TIMKGYVGDDKATSETVH 360
+ + G +E+ +I E + G++GEL + + GY+ +AT+E +
Sbjct: 319 KTGTEMAPGFFSEVRIVRI-GGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ 377
Query: 361 SEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYP 420
+GW +T D+ + G + I+ R+ ++I + P E+E +L + P + + VI
Sbjct: 378 -DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLA 436
Query: 421 DEEAGQIPMAFVVRKPGSNITEAEIMDFIAK--QVAPYKKIRRVAFINSIPKSTAGKILR 478
D+ GQ A VV + G ++ A+ +D + ++A +K+ +R ++ +PK+ K+LR
Sbjct: 437 DQRWGQSVTACVVPRLGETLS-ADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLR 495
Query: 479 RELVTHAIS 487
R+LV S
Sbjct: 496 RQLVQQVSS 504
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 169/369 (45%), Gaps = 29/369 (7%)
Query: 131 SDPAAILYSSGTTGKVKGVLL------SHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFF 184
+ PA I Y+SGTTG K ++ S + ++ G H H V
Sbjct: 153 AQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGR-----------HNVVLG 201
Query: 185 TLPMFHVFGFF-MLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINS 243
+P++HV GFF +LV A + T V +E F L+ V+ +VT + +P + A +
Sbjct: 202 LMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTHLDALAAA 261
Query: 244 KLT--DKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPD 301
L SL+ + GA + V + P ++ YG TE S +
Sbjct: 262 AAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI-YGTTE--AMNSLYMRQP 318
Query: 302 EAERHGSVGRLAELMEAKIVDPATGEALPPGQKGELWLRGP-TIMKGYVGDDKATSETVH 360
+ + G +E+ +I E + G++GEL + + GY+ +AT+E +
Sbjct: 319 KTGTEMAPGFFSEVRIVRI-GGGVDEIVANGEEGELIVAASDSAFVGYLNQPEATAEKLQ 377
Query: 361 SEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYP 420
+GW +T D+ + G + I+ R+ ++I + P E+E +L + P + + VI
Sbjct: 378 -DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLA 436
Query: 421 DEEAGQIPMAFVVRKPGSNITEAEIMDFIAK--QVAPYKKIRRVAFINSIPKSTAGKILR 478
D+ GQ A VV + G ++ A+ +D + ++A +K+ +R ++ +PK+ K+LR
Sbjct: 437 DQRWGQSVTACVVPRLGETLS-ADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLR 495
Query: 479 RELVTHAIS 487
R+LV S
Sbjct: 496 RQLVQQVSS 504
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 169/369 (45%), Gaps = 29/369 (7%)
Query: 131 SDPAAILYSSGTTGKVKGVLL------SHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFF 184
+ PA I Y+SGTTG K ++ S + ++ G H H V
Sbjct: 153 AQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGR-----------HNVVLG 201
Query: 185 TLPMFHVFGFF-MLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINS 243
+P++HV GFF +LV A + T V +E F L+ V+ +VT + +P + A +
Sbjct: 202 LMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAA 261
Query: 244 KLT--DKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPD 301
L SL+ + GA + V + P ++ YG TE S +
Sbjct: 262 AAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI-YGTTE--AMNSLYMRQP 318
Query: 302 EAERHGSVGRLAELMEAKIVDPATGEALPPGQKGELWLRGP-TIMKGYVGDDKATSETVH 360
+ + G +E+ +I E + G++GEL + + GY+ +AT+E +
Sbjct: 319 KTGTEMAPGFFSEVRIVRI-GGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ 377
Query: 361 SEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYP 420
+GW +T D+ + G + I+ R+ ++I + P E+E +L + P + + VI
Sbjct: 378 -DGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLA 436
Query: 421 DEEAGQIPMAFVVRKPGSNITEAEIMDFIAK--QVAPYKKIRRVAFINSIPKSTAGKILR 478
D+ GQ A VV + G ++ A+ +D + ++A +K+ +R ++ +PK+ K+LR
Sbjct: 437 DQRWGQSVTACVVPRLGETLS-ADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLR 495
Query: 479 RELVTHAIS 487
R+LV S
Sbjct: 496 RQLVQQVSS 504
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 100/381 (26%), Positives = 176/381 (46%), Gaps = 30/381 (7%)
Query: 132 DPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHV 191
DP ILY+SG+TGK KGVL + + A + + P + + + T + V
Sbjct: 257 DPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGD------IYWCTADVGWV 310
Query: 192 FGFFMLVRA--ASKGETLVFMERFDF---EKMLKAVENYRVTYMPVSPPLIVAFI--NSK 244
G L+ A TL+F ++ +M + V+ ++V + +P I A + K
Sbjct: 311 TGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK 370
Query: 245 LTDKYDLSSLQLLGCGGAPLGKEVTLKF-----KEKFPNVEIRQGYGLTETGGAGSRVIG 299
+ D SSL++LG G P+ E + KEK P V+ + TETGG +
Sbjct: 371 AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDT---WWQTETGGFMITPLP 427
Query: 300 PDEAERHGSVGRLAELMEAKIVDPATGEALPPGQKGELWL--RGPTIMKGYVGDDKATSE 357
+ GS R ++ +VD G +G L + P + GD + +
Sbjct: 428 GAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQ 486
Query: 358 TVHS--EGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAA 415
T S + +GD D +G+ +I R+ +++ +++ E+E L ++P+IA+AA
Sbjct: 487 TYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAA 546
Query: 416 VIPYPDEEAGQIPMAFVVRKPGSNITE---AEIMDFIAKQVAPYKKIRRVAFINSIPKST 472
V+ P GQ A+V G + AE+ +++AK++ P + + +S+PK+
Sbjct: 547 VVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVAKEIGPLATPDVLHWTDSLPKTR 606
Query: 473 AGKILRRELVTHAISGNLSKL 493
+GKI+RR ++ +G+ S L
Sbjct: 607 SGKIMRR-ILRKIAAGDTSNL 626
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 111/468 (23%), Positives = 201/468 (42%), Gaps = 39/468 (8%)
Query: 48 VLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFAT-SHTSYKLPSNLRTILMD-- 104
+ +F+LL LGV A SE++ +P++ A H + L T + +
Sbjct: 90 ITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHS 149
Query: 105 SPEFISLLNQN-----EDVADFANSNMTVYQSDPAAILY---SSGTTGKVKGVLLSHLNV 156
S + LLN + +D + + T S + Y S GTTG K + +H +
Sbjct: 150 SIRVVQLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDY 209
Query: 157 IAIIAGYYHVTEETDPNEGPPPHPVSF-FTLPMFHVFGFFM----LVRAASKGETLVFME 211
+ + + T P + + + G F+ +V AA TL F
Sbjct: 210 YYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCF-- 267
Query: 212 RFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLT--DKYDLSSLQLLGCGGAPLGKEVT 269
+E ++V + PP + ++ + + + L+SL+LL GGA L +
Sbjct: 268 --------PLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLA 319
Query: 270 LKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIVDPATGEAL 329
+ + +++Q +G+ E +R+ E H + E + D A G L
Sbjct: 320 ARIPAEI-GCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVAD-AEGNPL 377
Query: 330 PPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELI 389
P G+ G L RGP +GY + + + G+ +GDL D G++ + R K+ I
Sbjct: 378 PQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQI 437
Query: 390 KYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAF-VVRKPGSNITEAEIMDF 448
++ E+E+LL +P + AA++ DE G+ A+ VV++P + ++ F
Sbjct: 438 NRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEP---LRAVQVRRF 494
Query: 449 IAKQ-VAPYKKIRRVAFINSIPKSTAGKI----LRRELVTHAISGNLS 491
+ +Q +A +K RV ++S+P + GK+ LR+ L + A +G S
Sbjct: 495 LREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRASAGRAS 542
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 118/248 (47%), Gaps = 12/248 (4%)
Query: 136 ILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFF 195
I+Y+SGTTG KGV+ +H +V + + + + + P LPMFHV
Sbjct: 161 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLP-------LPMFHVAALT 213
Query: 196 MLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQ 255
++ +A +G TL+ M +FD K+ + RV P ++ + D +
Sbjct: 214 TVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFR 273
Query: 256 LLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAEL 315
GGAP+ + + + K N+E+ QGY LTE+ G G+ ++ D + GS GR A +
Sbjct: 274 YFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGR-ATM 330
Query: 316 MEAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDS 375
V G G+ GE+ ++ ++K Y +AT + + GW +TGD+ D
Sbjct: 331 FTDVAVRGDDGVIREHGE-GEVVIKSDILLKEYWNRPEATRDAFDN-GWFRTGDIGEIDD 388
Query: 376 NGFLFIVD 383
G+L+I D
Sbjct: 389 EGYLYIKD 396
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 99/381 (25%), Positives = 175/381 (45%), Gaps = 30/381 (7%)
Query: 132 DPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHV 191
DP ILY+SG+TGK KGVL + + A + + P + + + T + V
Sbjct: 257 DPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGD------IYWCTADVGWV 310
Query: 192 FGFFMLVRA--ASKGETLVFMERFDF---EKMLKAVENYRVTYMPVSPPLIVAFI--NSK 244
G L+ A TL+F ++ +M + V+ ++V + +P I A + K
Sbjct: 311 TGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK 370
Query: 245 LTDKYDLSSLQLLGCGGAPLGKEVTLKF-----KEKFPNVEIRQGYGLTETGGAGSRVIG 299
+ D SSL++LG G P+ E + KEK P V+ + TETGG +
Sbjct: 371 AIEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDT---WWQTETGGFMITPLP 427
Query: 300 PDEAERHGSVGRLAELMEAKIVDPATGEALPPGQKGELWL--RGPTIMKGYVGDDKATSE 357
+ GS R ++ +VD G +G L + P + GD + +
Sbjct: 428 GAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQ 486
Query: 358 TVHS--EGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAA 415
T S + +GD D +G+ +I R+ +++ +++ E+E L ++P+IA+AA
Sbjct: 487 TYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAA 546
Query: 416 VIPYPDEEAGQIPMAFVVRKPGSNITE---AEIMDFIAKQVAPYKKIRRVAFINSIPKST 472
V+ P GQ A+V G + AE+ +++ K++ P + + +S+PK+
Sbjct: 547 VVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTR 606
Query: 473 AGKILRRELVTHAISGNLSKL 493
+GKI+RR ++ +G+ S L
Sbjct: 607 SGKIMRR-ILRKIAAGDTSNL 626
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/371 (25%), Positives = 164/371 (44%), Gaps = 33/371 (8%)
Query: 131 SDPAAILYSSGTTGKVKGVLL------SHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFF 184
+ PA I Y+SGTTG K ++ S + + G H H V
Sbjct: 153 AQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGR-----------HNVVLG 201
Query: 185 TLPMFHVFGFF-MLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINS 243
P++HV GFF +LV A + T V +E F L+ V+ +VT + +P + A +
Sbjct: 202 LXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAA 261
Query: 244 KLT--DKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPD 301
L SL+ + GA V + P ++ YG TE +
Sbjct: 262 AAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVNI-YGTTEAXNSLY-----X 315
Query: 302 EAERHGSVGRLAELMEAKIVDPATG--EALPPGQKGELWLRGP-TIMKGYVGDDKATSET 358
+ G+ E +IV G E + G++GEL + + GY+ +AT+E
Sbjct: 316 RQPKTGTEXAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEK 375
Query: 359 VHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAAVIP 418
+ +GW +T D+ + G + I+ R+ + I + P E+E +L + P + + VI
Sbjct: 376 LQ-DGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVVIG 434
Query: 419 YPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAK--QVAPYKKIRRVAFINSIPKSTAGKI 476
D+ GQ A VV + G ++ A+ +D + ++A +K+ +R ++ +PK+ K+
Sbjct: 435 LADQRWGQSVTACVVPRLGETLS-ADALDTFCRSSELADFKRPKRYFILDQLPKNALNKV 493
Query: 477 LRRELVTHAIS 487
LRR+LV S
Sbjct: 494 LRRQLVQQVSS 504
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/381 (25%), Positives = 175/381 (45%), Gaps = 30/381 (7%)
Query: 132 DPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHV 191
DP ILY+SG+TGK KGVL + + A + + P + + + T + V
Sbjct: 257 DPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGD------IYWCTADVGWV 310
Query: 192 FGFFMLVRA--ASKGETLVFMERFDF---EKMLKAVENYRVTYMPVSPPLIVAFI--NSK 244
G L+ A TL+F ++ +M + V+ ++V + +P I A + K
Sbjct: 311 TGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK 370
Query: 245 LTDKYDLSSLQLLGCGGAPLGKEVTLKF-----KEKFPNVEIRQGYGLTETGGAGSRVIG 299
+ D SSL++LG G P+ E + KEK P V+ + TETGG +
Sbjct: 371 AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDT---WWQTETGGFMITPLP 427
Query: 300 PDEAERHGSVGRLAELMEAKIVDPATGEALPPGQKGELWL--RGPTIMKGYVGDDKATSE 357
+ GS R ++ +VD G +G L + P + GD + +
Sbjct: 428 GAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQ 486
Query: 358 TVHS--EGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAA 415
T S + +GD D +G+ +I R+ +++ +++ E+E L ++P+IA+AA
Sbjct: 487 TYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAA 546
Query: 416 VIPYPDEEAGQIPMAFVVRKPGSNITE---AEIMDFIAKQVAPYKKIRRVAFINSIPKST 472
V+ P GQ A+V G + AE+ +++ K++ P + + +S+PK+
Sbjct: 547 VVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTR 606
Query: 473 AGKILRRELVTHAISGNLSKL 493
+GKI+RR ++ +G+ S L
Sbjct: 607 SGKIMRR-ILRKIAAGDTSNL 626
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/381 (25%), Positives = 175/381 (45%), Gaps = 30/381 (7%)
Query: 132 DPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHV 191
DP ILY+SG+TGK KGVL + + A + + P + + + T + V
Sbjct: 257 DPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGD------IYWCTADVGWV 310
Query: 192 FGFFMLVRA--ASKGETLVFMERFDF---EKMLKAVENYRVTYMPVSPPLIVAFI--NSK 244
G L+ A TL+F ++ +M + V+ ++V + +P I A + K
Sbjct: 311 TGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK 370
Query: 245 LTDKYDLSSLQLLGCGGAPLGKEVTLKF-----KEKFPNVEIRQGYGLTETGGAGSRVIG 299
+ D SSL++LG G P+ E + KEK P V+ + TETGG +
Sbjct: 371 AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDT---WWQTETGGFMITPLP 427
Query: 300 PDEAERHGSVGRLAELMEAKIVDPATGEALPPGQKGELWL--RGPTIMKGYVGDDKATSE 357
+ GS R ++ +VD G +G L + P + GD + +
Sbjct: 428 GAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQ 486
Query: 358 TVHS--EGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAA 415
T S + +GD D +G+ +I R+ +++ +++ E+E L ++P+IA+AA
Sbjct: 487 TYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAA 546
Query: 416 VIPYPDEEAGQIPMAFVVRKPGSNITE---AEIMDFIAKQVAPYKKIRRVAFINSIPKST 472
V+ P GQ A+V G + AE+ +++ K++ P + + +S+PK+
Sbjct: 547 VVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTR 606
Query: 473 AGKILRRELVTHAISGNLSKL 493
+GKI+RR ++ +G+ S L
Sbjct: 607 SGKIMRR-ILRKIAAGDTSNL 626
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/381 (25%), Positives = 175/381 (45%), Gaps = 30/381 (7%)
Query: 132 DPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHV 191
DP ILY+SG+TGK KGVL + + A + + P + + + T + V
Sbjct: 257 DPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGD------IYWCTADVGWV 310
Query: 192 FGFFMLVRA--ASKGETLVFMERFDF---EKMLKAVENYRVTYMPVSPPLIVAFI--NSK 244
G L+ A TL+F ++ +M + V+ ++V + +P I A + K
Sbjct: 311 TGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK 370
Query: 245 LTDKYDLSSLQLLGCGGAPLGKEVTLKF-----KEKFPNVEIRQGYGLTETGGAGSRVIG 299
+ D SSL++LG G P+ E + KEK P V+ + TETGG +
Sbjct: 371 AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDT---WWQTETGGFMITPLP 427
Query: 300 PDEAERHGSVGRLAELMEAKIVDPATGEALPPGQKGELWL--RGPTIMKGYVGDDKATSE 357
+ GS R ++ +VD G +G L + P + GD + +
Sbjct: 428 GAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQ 486
Query: 358 TVHS--EGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAA 415
T S + +GD D +G+ +I R+ +++ +++ E+E L ++P+IA+AA
Sbjct: 487 TYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAA 546
Query: 416 VIPYPDEEAGQIPMAFVVRKPGSNITE---AEIMDFIAKQVAPYKKIRRVAFINSIPKST 472
V+ P GQ A+V G + AE+ +++ K++ P + + +S+PK+
Sbjct: 547 VVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTR 606
Query: 473 AGKILRRELVTHAISGNLSKL 493
+GKI+RR ++ +G+ S L
Sbjct: 607 SGKIMRR-ILRKIAAGDTSNL 626
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/381 (25%), Positives = 175/381 (45%), Gaps = 30/381 (7%)
Query: 132 DPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHV 191
DP ILY+SG+TGK KGVL + + A + + P + + + T + V
Sbjct: 257 DPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGD------IYWCTADVGWV 310
Query: 192 FGFFMLVRA--ASKGETLVFMERFDF---EKMLKAVENYRVTYMPVSPPLIVAFI--NSK 244
G L+ A TL+F ++ +M + V+ ++V + +P I A + K
Sbjct: 311 TGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK 370
Query: 245 LTDKYDLSSLQLLGCGGAPLGKEVTLKF-----KEKFPNVEIRQGYGLTETGGAGSRVIG 299
+ D SSL++LG G P+ E + KEK P V+ + TETGG +
Sbjct: 371 AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDT---WWQTETGGFMITPLP 427
Query: 300 PDEAERHGSVGRLAELMEAKIVDPATGEALPPGQKGELWL--RGPTIMKGYVGDDKATSE 357
+ GS R ++ +VD G +G L + P + GD + +
Sbjct: 428 GAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQ 486
Query: 358 TVHS--EGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAA 415
T S + +GD D +G+ +I R+ +++ +++ E+E L ++P+IA+AA
Sbjct: 487 TYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAA 546
Query: 416 VIPYPDEEAGQIPMAFVVRKPGSNITE---AEIMDFIAKQVAPYKKIRRVAFINSIPKST 472
V+ P GQ A+V G + AE+ +++ K++ P + + +S+PK+
Sbjct: 547 VVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVEKEIGPLATPDVLHWTDSLPKTR 606
Query: 473 AGKILRRELVTHAISGNLSKL 493
+GKI+RR ++ +G+ S L
Sbjct: 607 SGKIMRR-ILRKIAAGDTSNL 626
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 98/381 (25%), Positives = 174/381 (45%), Gaps = 30/381 (7%)
Query: 132 DPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHV 191
DP ILY+SG+TGK KGVL + + A + + P + + + T + V
Sbjct: 257 DPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGD------IYWCTADVGWV 310
Query: 192 FGFFMLVRA--ASKGETLVFMERFDF---EKMLKAVENYRVTYMPVSPPLIVAFI--NSK 244
G L+ A TL+F ++ +M + V+ ++V + +P I A + K
Sbjct: 311 TGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK 370
Query: 245 LTDKYDLSSLQLLGCGGAPLGKEVTLKF-----KEKFPNVEIRQGYGLTETGGAGSRVIG 299
+ D SSL++LG G P+ E + KEK P V+ + TETGG +
Sbjct: 371 AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDT---WWQTETGGFMITPLP 427
Query: 300 PDEAERHGSVGRLAELMEAKIVDPATGEALPPGQKGELWL--RGPTIMKGYVGDDKATSE 357
+ GS R ++ +VD G +G L + P + GD + +
Sbjct: 428 GAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQ 486
Query: 358 TVHS--EGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAA 415
T S + +GD D +G+ +I R+ +++ +++ E+E L ++P+IA+AA
Sbjct: 487 TYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAA 546
Query: 416 VIPYPDEEAGQIPMAFVVRKPGSNITE---AEIMDFIAKQVAPYKKIRRVAFINSIPKST 472
V+ P GQ A+V G + AE+ +++ K++ P + + +S+PK+
Sbjct: 547 VVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTR 606
Query: 473 AGKILRRELVTHAISGNLSKL 493
+G I+RR ++ +G+ S L
Sbjct: 607 SGAIMRR-ILRKIAAGDTSNL 626
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 130/264 (49%), Gaps = 10/264 (3%)
Query: 222 VENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEI 281
++ ++V + P ++ ++ K + SL+LL GGA + + + E N ++
Sbjct: 277 IQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKL 335
Query: 282 RQGYGLTETGGAGSRVIGPDEAERHGSVGR-LAELMEAKIVDPATGEALPPGQKGELWLR 340
+Q +G+ E +R+ DE + + GR ++ E KIVD E +P G+ G L R
Sbjct: 336 QQVFGMAEGLVNYTRLDDSDE-QIFTTQGRPISSDDEIKIVDEQYRE-VPEGEIGMLATR 393
Query: 341 GPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVE 400
GP GY + S+ + + +GDL +G L +V R+K+ I ++ E
Sbjct: 394 GPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEE 453
Query: 401 LEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVV-RKP--GSNITEAEIMDFIAKQVAPYK 457
+E L+ +PE+ AA++ DE+ G+ AF+V R P + + +M+ +A YK
Sbjct: 454 IEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMEL---GIAQYK 510
Query: 458 KIRRVAFINSIPKSTAGKILRREL 481
++ I S+P + GK+ +++L
Sbjct: 511 LPDQIKLIESLPLTAVGKVDKKQL 534
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 100/387 (25%), Positives = 173/387 (44%), Gaps = 47/387 (12%)
Query: 128 VYQSDPAAILYSSGTTGKVKGVLLS---HLNVIAIIAGYYHVTEETDP--NEGPPPHPVS 182
V DP +LY+SG+TG KGV S +L + Y T + D G +
Sbjct: 259 VDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGD----IG 314
Query: 183 FFTLPMFHVFGFFMLVRAASKGETLVFM---ERFDFEKMLKAVENYRVTYMPVSPPLI-- 237
+ T + V+G + A TLVF ++ + ++ ++VT V+P +
Sbjct: 315 WITGHTYVVYGPLLYGCA-----TLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRL 369
Query: 238 VAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEI--RQGYGLTETGGAGS 295
+ + + L SL+ LG G P+ EV + EK EI Y TE+G S
Sbjct: 370 LKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESG---S 426
Query: 296 RVIGPDEAE----RHGSVGRLAELMEAKIVDPATGEALPPGQ-KGELWLRGP------TI 344
++ P + GS ++A ++DP TGE L +G L ++ TI
Sbjct: 427 HLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTI 486
Query: 345 MKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHL 404
K + D + G+ TGD D +G+++I+ R+ +++ +++ E+E
Sbjct: 487 WKNH--DRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAA 544
Query: 405 LHSNPEIADAAVIPYPDEEAGQIPMAFVVRK---PGSNITEAEIMDF-------IAKQVA 454
+ +P +A+ AV+ + D+ GQ AFVV K S T+ E+ D + K +
Sbjct: 545 IIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIG 604
Query: 455 PYKKIRRVAFINSIPKSTAGKILRREL 481
P+ + + ++ +PK+ +GKI+RR L
Sbjct: 605 PFAAPKLIILVDDLPKTRSGKIMRRIL 631
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 170/395 (43%), Gaps = 59/395 (14%)
Query: 131 SDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFH 190
+D A + Y+SG+T +GV+++H V A + H + P + VS+ LP +H
Sbjct: 175 NDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGD----RCVSW--LPFYH 228
Query: 191 VFGF--FMLVRAASKGETLVFMERFDFE----KMLKAVENYRVTYMPVSPP----LIVAF 240
G F+L A++ ++ ++ DF + LK + R T + V+PP L
Sbjct: 229 DXGLVGFLLTPVATQ-LSVDYLRTQDFAXRPLQWLKLISKNRGT-VSVAPPFGYELCQRR 286
Query: 241 INSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQ-----GYGLTETGGAGS 295
+N K + DLS ++ G G P+ E +F E F V YGL E A
Sbjct: 287 VNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXPCYGLAENALA-- 344
Query: 296 RVIGPDEAERH--GSVGRLAELMEAKIVDPA-----------TGEALP------------ 330
V DEA V R + K V P G+ALP
Sbjct: 345 -VSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEAGX 403
Query: 331 PGQK---GELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKE 387
P + G + + GP++ GY GD + + + + + GWL TGDL Y +G+L++ R+K+
Sbjct: 404 PVAERVVGHICISGPSLXSGYFGD-QVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKD 461
Query: 388 LIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMD 447
LI + + P ++E++ PEI I + + +I + R I
Sbjct: 462 LIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQE-KIILQIQCRISDEERRGQLIHA 520
Query: 448 FIAKQVAPYKKIRRVAFI--NSIPKSTAGKILRRE 480
A+ + + + + +SIP++++GK R E
Sbjct: 521 LAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARAE 555
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 90/379 (23%), Positives = 155/379 (40%), Gaps = 31/379 (8%)
Query: 127 TVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTL 186
+V D I+++SGTTG+ KGV +SH N+++ D P P
Sbjct: 141 SVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIE-----DAAFDVPKQPQMLAQP 195
Query: 187 PMFHVFGFFMLVRAASKGETLVFMER---FDFEKMLKAVENYRVTYMPVSPPLIVAFINS 243
P + G TL + + DF+++ + V +P + S
Sbjct: 196 PYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLS 255
Query: 244 KLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRV-IGPDE 302
+ + +L G L K E+FP+ +I YG TE A S + I +
Sbjct: 256 DDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM 315
Query: 303 AERHGS--VGRLAELMEAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSE--- 357
+ + +G I+D G+ L G++GE+ + GP + KGY+ + + T+E
Sbjct: 316 VDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFF 374
Query: 358 TVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAAVI 417
T + TGD+ + L RL IKY Y++ ++ L+ +P +A A +
Sbjct: 375 TFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAV 434
Query: 418 P-YPDEEAGQIPMAFVVRKPG-----------SNITEAEIMDFIAKQVAPYKKIRRVAFI 465
P Y E Q +A++V K G + +A + D + + P K + R
Sbjct: 435 PRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYR---- 490
Query: 466 NSIPKSTAGKILRRELVTH 484
+S+P + GKI + L+
Sbjct: 491 DSLPLTPNGKIDIKTLINE 509
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 17/244 (6%)
Query: 256 LLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEA-ERHGS--VGRL 312
L CG L EV K E+FP I YG TE A + + +E +++ S VG
Sbjct: 266 FLFCGEV-LPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYC 324
Query: 313 AELMEAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSET---VHSEGWLKTGD 369
I+ G P G+KGE+ + GP++ GY+G + T + + E KTGD
Sbjct: 325 KSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGD 383
Query: 370 LCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPM 429
Y + NG LF RL IK Y++ E+EH L + + A ++P E +
Sbjct: 384 AGYVE-NGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLL 442
Query: 430 AFVVRKPGSNITEAE------IMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRRELVT 483
A VV PG + E E I + +++ Y R+ + +SIP + GK+ R++L++
Sbjct: 443 AVVV--PGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLS 500
Query: 484 HAIS 487
+
Sbjct: 501 EVTA 504
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 17/244 (6%)
Query: 256 LLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEA-ERHGS--VGRL 312
L CG L EV K E+FP I YG TE A + + +E +++ S VG
Sbjct: 266 FLFCGEV-LPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYC 324
Query: 313 AELMEAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSET---VHSEGWLKTGD 369
I+ G P G+KGE+ + GP++ GY+G + T + + E KTGD
Sbjct: 325 KSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGD 383
Query: 370 LCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPM 429
Y + NG LF RL IK Y++ E+EH L + + A ++P E +
Sbjct: 384 AGYVE-NGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLL 442
Query: 430 AFVVRKPGSNITEAE------IMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRRELVT 483
A VV PG + E E I + +++ Y R+ + +SIP + GK+ R++L++
Sbjct: 443 AVVV--PGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLS 500
Query: 484 HAIS 487
+
Sbjct: 501 EVTA 504
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 163/364 (44%), Gaps = 26/364 (7%)
Query: 132 DPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHV 191
D A ++Y+SGTTG KGV + H NV+A++AG V + + + H +S F ++ +
Sbjct: 176 DMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWLLFHSLS-FDFSVWEI 234
Query: 192 FGFFMLVRAASKGETLVFMERFDF---EKMLKAVENYRVTYMPVSPPLIVAFINSKLTDK 248
+G F S G LV + + E+ L + + VT + +P +A + +
Sbjct: 235 WGAF------STGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLALTEAAVRGG 288
Query: 249 YDLSSLQLLGCGGAPLGKEVTLKFKEKF--PNVEIRQGYGLTETGGAGSRVIGPDE--AE 304
D+S L+ + GG L + + + F + GYG+TET + + A+
Sbjct: 289 RDVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGITETTVFTTFEEITEAYLAQ 348
Query: 305 RHGSVGRLAELMEAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSE------- 357
+GR ++V G + PG+ GELWL G + +GY+ + T+E
Sbjct: 349 DASIIGRALPSFGTRVVGD-DGRDVAPGETGELWLSGAQLAEGYLRRPELTAEKFPEVTD 407
Query: 358 --TVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAA 415
T S + +TGDL +G R IK + Y++ ++E + + ++ DA
Sbjct: 408 EKTGESVRYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRIELSDIETAVRRHDDVVDAV 467
Query: 416 VIPYPDEEAG-QIPMAFVVRKPGSNITEAEIMDFIAKQVAPYKKIRRVAFINSIPKSTAG 474
V + ++ A+V R+ GS T E+ + I + Y R + +P++ G
Sbjct: 468 VTVREFKPGDLRLVCAYVARE-GSATTARELRNHIKTLLPAYMHPARYLPLPGLPRTVNG 526
Query: 475 KILR 478
K+ R
Sbjct: 527 KVDR 530
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 164/379 (43%), Gaps = 36/379 (9%)
Query: 123 NSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIA----IIAGYYHVTEETDPNEGPPP 178
+ + V + + I+Y+SG+TG KGV +S N+ + I A + + N+ P
Sbjct: 135 SQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFS 194
Query: 179 HPVSFFTL-PMFHVFGFFMLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPLI 237
+S L P G V + + V FE++ K+ N + S P
Sbjct: 195 FDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVL-----FEELKKSGLN-----VWTSTP-- 242
Query: 238 VAFINSKLTD---KYDL--SSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGG 292
+F+ L D DL + + CG L V E+FP +I YG TE
Sbjct: 243 -SFVQMCLMDPGFSQDLLPHADTFMFCGEV-LPVSVAKALLERFPKAKIFNTYGPTEATV 300
Query: 293 AGSRV-IGPDEAERHGS--VGRLAELMEAKIVDPATGEALPPGQKGELWLRGPTIMKGYV 349
A + V I D R S VG M I+D G+ LP G+KGE+ + GP++ +GY+
Sbjct: 301 AVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYL 359
Query: 350 GDDKATSETV--HSEGW-LKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLH 406
G+ + T + H W +TGD F +G +F RL IK Y++ E+E +
Sbjct: 360 GEPELTEKAFFSHEGQWAYRTGD-AGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVR 418
Query: 407 SNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVA----PYKKIRRV 462
+ + A VIPY + +A +V + E ++ I K++A Y R+
Sbjct: 419 QSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKF 478
Query: 463 AFINSIPKSTAGKILRREL 481
+ + I + GKI R+ +
Sbjct: 479 IYQDHIQMTANGKIDRKRI 497
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 82/358 (22%), Positives = 155/358 (43%), Gaps = 23/358 (6%)
Query: 131 SDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFH 190
+D A ++Y+SGTTG KG +L H + + + + T+ + +SF
Sbjct: 182 TDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDA----S 237
Query: 191 VFGFFMLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYD 250
V+ FM + + ++ DF K + + +T + + P +V D
Sbjct: 238 VWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL------DPER 291
Query: 251 LSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGS-V 309
+ S+Q L G+ + K+KEK + YG TET + + E H +
Sbjct: 292 ILSIQTLITAGSATSPSLVNKWKEKVTYI---NAYGPTETTICATTWVATKETIGHSVPI 348
Query: 310 GRLAELMEAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSET------VHSEG 363
G + + IVD + G+ GEL + G + +GY + TS+ V E
Sbjct: 349 GAPIQNTQIYIVDENL-QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEK 407
Query: 364 WLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEE 423
KTGD + S+G + + R+ +K + ++V E+E +L + I++ AV + D +
Sbjct: 408 LYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQ 467
Query: 424 AGQIPMAFVVRKPGSNITEAEIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRREL 481
A+ V + +I ++ F ++++ Y ++ +P ++ GKI R++L
Sbjct: 468 EQPYLCAYFVSE--KHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQL 523
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 94/398 (23%), Positives = 168/398 (42%), Gaps = 49/398 (12%)
Query: 110 SLLNQNEDVADFANSNMT--VYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVT 167
+L ++E +D N+ V D A ++++SG+TG+ KGV+ H + G +
Sbjct: 191 TLYVEDEAASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYA- 249
Query: 168 EETDPNEGPPP-----HPVSF--FTLPMFH--VFGFFMLVRAASKGETLVFMERFDFEKM 218
GP PVS+ F L +F +FG ++++ + L E
Sbjct: 250 -----GFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGE------- 297
Query: 219 LKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPN 278
V + VT + +S L F+ ++ + ++ ++ GG P K + P
Sbjct: 298 --LVARHGVTMLQLSASLF-NFLVDEVPEAFE--GVRYAITGGEPASVPHVAKARRDHPA 352
Query: 279 VEIRQGYGLTETGGAGSR--VIGPDEAERHGSVGRLAELMEAKIVD----PATGEALPPG 332
+ + GYG E+ G + V+ D + +G A ++D PA AL
Sbjct: 353 LRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGAL--- 409
Query: 333 QKGELWLRGPTIMKGYVGDDKATSETV--------HSEGWLKTGDLCYFDSNGFLFIVDR 384
GEL++ G + GYV T+E E +TGDL ++G L V R
Sbjct: 410 --GELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGR 467
Query: 385 LKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVV-RKPGSNITEA 443
+ +K + ++V P E+E L +P + AAV+ + +A+VV + + A
Sbjct: 468 ADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAA 527
Query: 444 EIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRREL 481
E+ +A+ + Y ++ +P++ GK+ RR L
Sbjct: 528 ELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRAL 565
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 97/420 (23%), Positives = 166/420 (39%), Gaps = 68/420 (16%)
Query: 127 TVYQSDPAAILYSSGTTGKVKGVLLSHLNVI---AIIAGYYHVTEETDPNEGPPPHPVSF 183
++ +D A + Y+SG+T KGV +SH N++ I +H +ET + F
Sbjct: 163 SIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHXNDET----------IIF 212
Query: 184 FTLPMFHVFGFF-MLVRAASKGETLVFMERFDFEK----MLKAVENYRVTYMPVSPPL-- 236
LP H G ++ G + F F + LK + Y+ T + SP
Sbjct: 213 SWLPPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLKHITKYKAT-ISGSPNFAY 271
Query: 237 --IVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQ-----GYGLTE 289
V I + + DLSS G P+ +E F + F R+ YGL E
Sbjct: 272 DYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQAFKEFGFRKEAFYPCYGLAE 331
Query: 290 -----TGGA-GSR----VIGPDEAERH----------GSVGRLAE---LMEAKIVDPATG 326
TGG GS + ++ + H GS ++ + E KI+DP T
Sbjct: 332 ATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTL 391
Query: 327 EALPPGQKGELWLRGPTIMKGYVGDDKATSETV--------HSEGWLKTGDLCYFDSNGF 378
Q GE+W++ ++ KGY + T S +L+TGDL + N
Sbjct: 392 IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENE- 450
Query: 379 LFIVDRLKELIKYKAYQVPPVELEHLLHSNP---EIADAAVIPYPDEEAGQIPMAFVVR- 434
L++ R+K+LI P ++E L +P + A +E ++ + V+
Sbjct: 451 LYVTGRIKDLIIIYGKNHYPQDIEFSLXHSPLHHVLGKCAAFVIQEEHEYKLTVXCEVKN 510
Query: 435 KPGSNITEAEIMDFIAKQVAPYKKIRRVAFI----NSIPKSTAGKILRRELVTHAISGNL 490
+ ++ + + + I + V ++ + + P +T+GKI R H + L
Sbjct: 511 RFXDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAXPHTTSGKIRRNFCRKHLLDKTL 570
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 8/158 (5%)
Query: 330 PPGQKGELWLRGPTIMKGYVGDDKATSETVHS------EGWLKTGDLCYFDSNGFLFIVD 383
P G GEL + G + KGYV T E E +TGDL + +G +
Sbjct: 799 PFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAG 858
Query: 384 RLKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEA 443
R+ + +K + +++ E+E L P + DA V+ E A++V + + ++
Sbjct: 859 RIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNR--TQLSAE 916
Query: 444 EIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRREL 481
++ + KQ+ Y + F++ +P +T GK+ +R L
Sbjct: 917 DVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLL 954
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 51 FSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSYK-----LPSNLRTILMDS 105
+L G P +P +S+ L+ + A +H K LP T+ +D
Sbjct: 532 LGVLKAGAAYLPVDPKLPEDRISYM--LADSAAACLLTHQEMKEQAAELPYTGTTLFIDD 589
Query: 106 PEFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAII 160
Q D A + N DPA I+Y+SGTTGK KG + +H N+ ++
Sbjct: 590 Q--TRFEEQASDPATAIDPN------DPAYIMYTSGTTGKPKGNITTHANIQGLV 636
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 137/344 (39%), Gaps = 35/344 (10%)
Query: 79 SKPSIAFATSHT--SYKLPSNLRTILMDSPEFISLLNQNEDVADFANS---NMTVYQSDP 133
S+ + AF + +LP + + + FI L+ +D +D N+ N+ Y
Sbjct: 125 SRAAXAFVCDNNFDGVELPPETKVLDTKNQSFIENLS-TQDTSDILNNYPENLDAY---- 179
Query: 134 AAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPM----F 189
+LY+SG+TG KGV +S N+ + + + P F L
Sbjct: 180 --LLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDV 237
Query: 190 HVFGFFMLVR---AASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLT 246
H+ F+ R A GE L ++ D + + + VT+ + P L+ +
Sbjct: 238 HIGEXFLAWRFGLCAVTGERLSXLD--DLPRTFRELG---VTHAGIVPSLL----DQTGL 288
Query: 247 DKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTE-TGGAGSRVIGPDEAER 305
D L LG GG T + V + YG TE T G + I PD R
Sbjct: 289 VPEDAPHLVYLGVGGEKXTPR-TQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTR 347
Query: 306 HGSVGRLAELMEAKIVDPATGEALPPGQKGELWLRGPTIMKGYVG--DDKATSETVHSEG 363
+G A ++ P + E + G GEL + G + GY+ D K + ++
Sbjct: 348 --CIGHPLGDSVAHVLAPGSNEHVKKGXAGELVIEGSLVANGYLNRPDAKGFCD-INGRK 404
Query: 364 WLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHS 407
+TGD+ D++ + + R E +K + ++ E+ ++ S
Sbjct: 405 XYRTGDIVRXDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRS 448
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 122/325 (37%), Gaps = 66/325 (20%)
Query: 117 DVADFANSNMTVYQSD----PAAILYSSGTTGKVKGVLLSHLNVIA----IIAGYYHVTE 168
D+ D N ++ D A + Y+SG+T GV++SH NV +++GY+
Sbjct: 165 DLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYF---- 220
Query: 169 ETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKG-------ETLVFMERFDFEKMLKA 221
D + PPP+ LP +H G + + A G + F++R L A
Sbjct: 221 -ADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMA 279
Query: 222 VENYRVTYMPVSPPLIVAFINSKLTDK----YDLSSLQLLGCGGAPLGKEVTLKFKEKFP 277
+ + + +P + TD DL ++ + G + +F ++F
Sbjct: 280 SDFHAFS---AAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFA 336
Query: 278 NVE-----IRQGYGLTETGG--AGSRVIGPDE----------------AERHGSVGRLAE 314
IR Y L E A S+ P E G+ ++
Sbjct: 337 RFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISY 396
Query: 315 LME----AKIVDPATGEALPPGQKGELWLRGPTIMKGY----------VGDDKATSETVH 360
++ +IVD T P G GE+W+ G + GY G T
Sbjct: 397 MLPRSPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGT 456
Query: 361 SEG-WLKTGDLCYFDSNGFLFIVDR 384
EG WL+TGD F ++G +FI+ R
Sbjct: 457 PEGPWLRTGD-SGFVTDGKMFIIGR 480
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 119/325 (36%), Gaps = 66/325 (20%)
Query: 117 DVADFANSNMTVYQSD----PAAILYSSGTTGKVKGVLLSHLNVIA----IIAGYYHVTE 168
D+ D N ++ D A + Y+SG+T GV+ SH NV + +GY+ T+
Sbjct: 165 DLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVXSHQNVRVNFEQLXSGYFADTD 224
Query: 169 ETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKG-------ETLVFMERFDFEKMLKA 221
PPP+ LP +H G + + A G + F++R L A
Sbjct: 225 GI-----PPPNSALVSWLPFYHDXGLVIGICAPILGGYPAVLTSPVSFLQRPARWXHLXA 279
Query: 222 VENYRVTYMPVSPPLIVAFINSKLTDK----YDLSSLQLLGCGGAPLGKEVTLKFKEKFP 277
+ + + +P + TD DL ++ + G + +F ++F
Sbjct: 280 SDFHAFS---AAPNFAFELAARRTTDDDXAGRDLGNILTILSGSERVQAATIKRFADRFA 336
Query: 278 NVE-----IRQGYGLTETGG--AGSRVIGPDEA------------ERHGSVGRLAELME- 317
IR YGL E A S+ P E + + G L+
Sbjct: 337 RFNLQERVIRPSYGLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISY 396
Query: 318 -------AKIVDPATGEALPPGQKGELWLRGPTIMKGY----------VGDDKATSETVH 360
+IVD T P G GE+W+ G + GY G T
Sbjct: 397 XLPRSPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGT 456
Query: 361 SEG-WLKTGDLCYFDSNGFLFIVDR 384
EG WL+TGD F ++G FI+ R
Sbjct: 457 PEGPWLRTGD-SGFVTDGKXFIIGR 480
>pdb|2Y4N|A Chain A, Paak1 In Complex With Phenylacetyl Adenylate
pdb|2Y4N|B Chain B, Paak1 In Complex With Phenylacetyl Adenylate
Length = 437
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 216 EKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYD--LSSLQLLGCGGAPLGKEVTLKFK 273
EK ++ ++++R + V+P +++ + D SSL++ G P ++ + +
Sbjct: 172 EKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIE 231
Query: 274 EKFPNVEIRQGYGLTETGGAG--SRVI----GPDEAERHGSVGRLAELMEAKIVDPATGE 327
++ ++ YGL+E G G S + GP E H +I+DP TGE
Sbjct: 232 QRM-GIDAVDIYGLSEVMGPGVASECVETKDGPTIWEDH---------FYPEIIDPETGE 281
Query: 328 ALPPGQKGEL 337
LP G+ GEL
Sbjct: 282 VLPDGELGEL 291
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 121/300 (40%), Gaps = 48/300 (16%)
Query: 110 SLLNQNEDVADFANSNMT--VYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVT 167
+L ++E +D N+ V D A ++++SG+TG+ KGV+ H + G +
Sbjct: 191 TLYVEDEAASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYA- 249
Query: 168 EETDPNEGPPP-----HPVSF--FTLPMFH--VFGFFMLVRAASKGETLVFMERFDFEKM 218
GP PVS+ F L +F +FG ++++ + L E
Sbjct: 250 -----GFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGE------- 297
Query: 219 LKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPN 278
V + VT + +S L F+ ++ + ++ ++ GG P K + P
Sbjct: 298 --LVARHGVTMLQLSASLF-NFLVDEVPEAFE--GVRYAITGGEPASVPHVAKARRDHPA 352
Query: 279 VEIRQGYGLTETGGAGSR--VIGPDEAERHGSVGRLAELMEAKIVD----PATGEALPPG 332
+ + GYG E+ G + V+ D + +G A ++D PA AL
Sbjct: 353 LRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGAL--- 409
Query: 333 QKGELWLRGPTIMKGYVGDDKATSETV--------HSEGWLKTGDLCYFDSNGFLFIVDR 384
GEL++ G + GYV T+E E +TGDL ++G L V R
Sbjct: 410 --GELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGR 467
>pdb|2Y27|A Chain A, Crystal Structure Of Paak1 In Complex With Atp From
Burkholderia Cenocepacia
pdb|2Y27|B Chain B, Crystal Structure Of Paak1 In Complex With Atp From
Burkholderia Cenocepacia
Length = 437
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 18/130 (13%)
Query: 216 EKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYD--LSSLQLLGCGGAPLGKEVTLKFK 273
EK ++ ++++R + V+P ++ + D SSL++ G P + + +
Sbjct: 172 EKQVQLIQDFRPDIIXVTPSYXLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDXRVAIE 231
Query: 274 EKFPNVEIRQGYGLTETGGAG--SRVI----GPDEAERHGSVGRLAELMEAKIVDPATGE 327
++ ++ YGL+E G G S + GP E H +I+DP TGE
Sbjct: 232 QRX-GIDAVDIYGLSEVXGPGVASECVETKDGPTIWEDH---------FYPEIIDPETGE 281
Query: 328 ALPPGQKGEL 337
LP G+ GEL
Sbjct: 282 VLPDGELGEL 291
>pdb|3QOV|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3QOV|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.20 A Resolution
pdb|3S89|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|B Chain B, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|C Chain C, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
pdb|3S89|D Chain D, Crystal Structure Of A Hypothetical Acyl-Coa Ligase
(Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.41 A Resolution
Length = 436
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 7/126 (5%)
Query: 216 EKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYD--LSSLQLLGCGGAPLGKEVTLKFK 273
++ +K + +++ T + P + + D ++L+ L G P E K
Sbjct: 168 KRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKI- 226
Query: 274 EKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIVDPATGEALPPGQ 333
E+ NV+ +G TE G G E + + +I+DP TGE +P G+
Sbjct: 227 ERXLNVKAYNSFGXTEXNGPGVAF----ECQEQNGXHFWEDCYLVEIIDPETGEPVPEGE 282
Query: 334 KGELWL 339
GEL L
Sbjct: 283 IGELVL 288
>pdb|2Y4O|A Chain A, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
pdb|2Y4O|B Chain B, Crystal Structure Of Paak2 In Complex With Phenylacetyl
Adenylate
Length = 443
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 6/136 (4%)
Query: 204 GETLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYD--LSSLQLLGCGG 261
G +V M EK ++ + ++ + V+P ++ I+ + D SSL++ G
Sbjct: 162 GCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGA 221
Query: 262 APLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIV 321
P + + + + + ++ YGL+E G G + + E + +I+
Sbjct: 222 EPWTQALRNEVETRV-GIDALDIYGLSEVMGPG---VACECVETKDGPVIWEDHFYPEII 277
Query: 322 DPATGEALPPGQKGEL 337
DP TGE LP G +GEL
Sbjct: 278 DPVTGEVLPDGSQGEL 293
>pdb|2YRW|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YRX|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YS6|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
pdb|2YS7|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus
Kaustophilus
Length = 451
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 368 GDLCYFDSNGFLFIVDR--LKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDE 422
G+ YF S+ + ++ R + I +KA Q P V ++ NP IAD A + + DE
Sbjct: 13 GENLYFQSHMNVLVIGRGGREHAIAWKAAQSPLVGKLYVAPGNPGIADVAELVHIDE 69
>pdb|1YC9|A Chain A, The Crystal Structure Of The Outer Membrane Protein Vcec
From The Bacterial Pathogen Vibrio Cholerae At 1.8
Resolution
Length = 442
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 63 ANPLSSTSEVSHQIQLSKPSIAFATSHTSYKLPSNLRTILMDSPEFISLLNQNEDVADFA 122
AN LSST+ SHQ ++ PS + + +L + L SP + + + FA
Sbjct: 4 ANELSSTNTFSHQAEMDWPSANWWQRYQDAQLNHLIEEALQHSPSLCMAMARLKGAQGFA 63
Query: 123 NSNMTVYQSDPAAILYSSGTTGKV 146
+ D L +S T KV
Sbjct: 64 RQAGAIRSFDLG--LAASATESKV 85
>pdb|3I4H|X Chain X, Crystal Structure Of Cas6 In Pyrococcus Furiosus
Length = 273
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 390 KYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKP 436
K K+Y VPP+E E ++ D V+ Y D+ + M ++ KP
Sbjct: 152 KGKSYDVPPMEKEFYSIIKDDLQDKYVMAYGDKPPSEFEMEVLIAKP 198
>pdb|3PKM|A Chain A, Crystal Structure Of Cas6 With Its Substrate Rna
pdb|3PKM|X Chain X, Crystal Structure Of Cas6 With Its Substrate Rna
Length = 269
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 390 KYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKP 436
K K+Y VPP+E E ++ D V+ Y D+ + M ++ KP
Sbjct: 148 KGKSYDVPPMEKEFYSIIKDDLQDKYVMAYGDKPPSEFEMEVLIAKP 194
>pdb|1RU3|A Chain A, Crystal Structure Of The Monomeric Acetyl-Coa Synthase
From Carboxydothermus Hydrogenoformans
Length = 732
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 240 FINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGS---- 295
FI+ DK ++L++ G + ++ + F F IR+G E GG +
Sbjct: 295 FISEPDYDKIVQTALEVRGIKITSIDIDLPINFGPAFEGESIRKGDMHVEFGGGKTPSFE 354
Query: 296 --RVIGPDEAE 304
R++GPDE E
Sbjct: 355 LVRMVGPDEIE 365
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,368,511
Number of Sequences: 62578
Number of extensions: 605860
Number of successful extensions: 1668
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1426
Number of HSP's gapped (non-prelim): 84
length of query: 493
length of database: 14,973,337
effective HSP length: 103
effective length of query: 390
effective length of database: 8,527,803
effective search space: 3325843170
effective search space used: 3325843170
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)