Query 011116
Match_columns 493
No_of_seqs 150 out of 2185
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 21:08:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011116.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011116hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 5.7E-77 1.9E-81 609.4 44.1 459 19-486 62-534 (536)
2 4fuq_A Malonyl COA synthetase; 100.0 1.7E-76 5.7E-81 600.9 41.8 455 14-488 38-501 (503)
3 2d1s_A Luciferase, luciferin 4 100.0 2.9E-75 1E-79 597.7 45.8 460 14-487 62-543 (548)
4 3r44_A Fatty acyl COA syntheta 100.0 1.3E-74 4.5E-79 589.0 39.0 454 14-488 53-514 (517)
5 3g7s_A Long-chain-fatty-acid-- 100.0 4.8E-75 1.6E-79 596.9 35.9 460 14-489 62-544 (549)
6 1mdb_A 2,3-dihydroxybenzoate-A 100.0 4.7E-74 1.6E-78 587.9 40.9 456 13-487 59-531 (539)
7 1pg4_A Acetyl-COA synthetase; 100.0 2.3E-73 7.8E-78 594.4 44.2 459 14-488 117-622 (652)
8 3rix_A Luciferase, luciferin 4 100.0 1.2E-74 4E-79 594.1 33.7 466 14-489 60-543 (550)
9 3etc_A AMP-binding protein; ad 100.0 2.4E-73 8.3E-78 586.2 43.3 459 13-488 95-580 (580)
10 1t5h_X 4-chlorobenzoyl COA lig 100.0 5.3E-73 1.8E-77 576.0 42.7 448 19-486 42-503 (504)
11 3fce_A D-alanine--poly(phospho 100.0 2.9E-73 9.9E-78 579.3 39.4 462 13-492 35-509 (512)
12 3e7w_A D-alanine--poly(phospho 100.0 3.3E-72 1.1E-76 571.1 42.7 457 14-490 36-506 (511)
13 3o83_A Peptide arylation enzym 100.0 3.8E-74 1.3E-78 589.2 28.6 459 14-490 65-543 (544)
14 1ry2_A Acetyl-coenzyme A synth 100.0 2.2E-72 7.4E-77 587.1 41.2 460 14-488 123-638 (663)
15 1v25_A Long-chain-fatty-acid-C 100.0 5.3E-73 1.8E-77 580.4 34.8 450 19-488 60-537 (541)
16 3l8c_A D-alanine--poly(phospho 100.0 3E-72 1E-76 573.3 38.2 461 14-491 39-516 (521)
17 3c5e_A Acyl-coenzyme A synthet 100.0 1.9E-71 6.4E-76 571.4 43.0 448 19-487 86-562 (570)
18 3rg2_A Enterobactin synthase c 100.0 4.4E-71 1.5E-75 574.7 43.3 455 13-487 59-534 (617)
19 3ivr_A Putative long-chain-fat 100.0 5.1E-73 1.7E-77 577.1 27.5 454 13-490 40-504 (509)
20 3tsy_A Fusion protein 4-coumar 100.0 2.4E-72 8.2E-77 613.4 34.2 465 18-488 100-583 (979)
21 2v7b_A Benzoate-coenzyme A lig 100.0 4.3E-71 1.5E-75 565.6 41.1 447 19-484 61-529 (529)
22 4gr5_A Non-ribosomal peptide s 100.0 2E-72 6.9E-77 579.7 30.2 448 13-485 109-569 (570)
23 1amu_A GRSA, gramicidin synthe 100.0 5.7E-71 2E-75 566.9 38.1 439 19-486 77-528 (563)
24 3ipl_A 2-succinylbenzoate--COA 100.0 6.7E-70 2.3E-74 553.3 41.0 447 14-489 36-499 (501)
25 3nyq_A Malonyl-COA ligase; A/B 100.0 3.5E-70 1.2E-74 554.5 37.6 432 28-484 64-505 (505)
26 4dg8_A PA1221; ANL superfamily 100.0 5.5E-70 1.9E-74 564.2 39.4 442 13-487 61-513 (620)
27 3ite_A SIDN siderophore synthe 100.0 5.5E-69 1.9E-73 554.1 30.2 464 13-492 64-548 (562)
28 2vsq_A Surfactin synthetase su 100.0 3E-67 1E-71 586.9 39.8 447 13-485 498-958 (1304)
29 3kxw_A Saframycin MX1 syntheta 100.0 1.5E-68 5.1E-73 554.7 26.7 454 19-492 53-572 (590)
30 3gqw_A Fatty acid AMP ligase; 100.0 9.9E-67 3.4E-71 539.8 31.1 452 14-488 59-564 (576)
31 4gs5_A Acyl-COA synthetase (AM 100.0 6.7E-54 2.3E-58 414.7 21.3 317 130-489 36-356 (358)
32 3t5a_A Long-chain-fatty-acid-- 100.0 2.1E-53 7E-58 430.2 21.8 353 14-384 68-480 (480)
33 3qov_A Phenylacetate-coenzyme 100.0 4.5E-50 1.6E-54 400.1 26.2 330 127-480 81-430 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 2E-49 7E-54 396.2 24.6 334 127-482 88-439 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 3E-49 1E-53 394.2 23.9 331 127-480 86-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 7.7E-32 2.6E-36 262.4 16.6 242 127-394 87-368 (369)
37 3gxs_A Phenylacetate-coenzyme 99.6 6.6E-15 2.3E-19 115.2 8.0 95 383-479 1-102 (109)
38 3lax_A Phenylacetate-coenzyme 99.6 1.1E-14 3.8E-19 114.1 8.8 95 383-478 1-101 (109)
39 4eql_A 4-substituted benzoates 99.0 2.5E-09 8.7E-14 106.8 12.5 134 251-408 296-447 (581)
40 4epl_A Jasmonic acid-amido syn 99.0 9.3E-09 3.2E-13 102.5 15.9 179 233-435 276-488 (581)
41 4b2g_A GH3-1 auxin conjugating 98.9 2.8E-09 9.5E-14 106.7 10.8 151 233-407 277-458 (609)
42 3ivr_A Putative long-chain-fat 75.1 26 0.0009 34.3 12.1 97 129-239 19-116 (509)
43 3ni2_A 4-coumarate:COA ligase; 73.6 22 0.00075 35.2 11.2 100 128-239 34-134 (536)
44 3g7s_A Long-chain-fatty-acid-- 70.6 32 0.0011 34.1 11.6 106 129-240 32-138 (549)
45 2y27_A Phenylacetate-coenzyme 69.0 15 0.0005 35.3 8.4 64 25-90 127-192 (437)
46 1v25_A Long-chain-fatty-acid-C 68.2 34 0.0012 33.8 11.2 102 129-240 31-133 (541)
47 2y4o_A Phenylacetate-coenzyme 67.9 15 0.00052 35.2 8.3 64 25-90 129-194 (443)
48 3rix_A Luciferase, luciferin 4 65.7 9.7 0.00033 37.9 6.6 87 149-240 49-136 (550)
49 1t5h_X 4-chlorobenzoyl COA lig 63.9 45 0.0015 32.6 11.0 100 129-240 15-117 (504)
50 3r44_A Fatty acyl COA syntheta 62.1 50 0.0017 32.3 11.0 97 128-236 28-125 (517)
51 3qov_A Phenylacetate-coenzyme 61.3 15 0.00052 35.2 6.8 68 20-90 119-188 (436)
52 3c5e_A Acyl-coenzyme A synthet 60.7 62 0.0021 32.2 11.4 103 129-240 56-160 (570)
53 1ry2_A Acetyl-coenzyme A synth 60.5 51 0.0018 33.6 11.0 98 129-234 95-194 (663)
54 1amu_A GRSA, gramicidin synthe 59.5 55 0.0019 32.5 10.8 96 129-238 52-148 (563)
55 3t5a_A Long-chain-fatty-acid-- 59.3 49 0.0017 31.9 10.3 107 129-243 37-149 (480)
56 3etc_A AMP-binding protein; ad 58.7 42 0.0014 33.6 9.8 98 128-234 68-166 (580)
57 3tsy_A Fusion protein 4-coumar 58.3 54 0.0019 35.2 11.2 99 127-237 72-171 (979)
58 3tbh_A O-acetyl serine sulfhyd 58.0 14 0.00048 34.1 5.7 61 27-88 65-126 (334)
59 2v7b_A Benzoate-coenzyme A lig 56.2 32 0.0011 33.8 8.4 96 129-238 36-132 (529)
60 3ipl_A 2-succinylbenzoate--COA 55.1 32 0.0011 33.6 8.1 67 22-90 194-261 (501)
61 4gr5_A Non-ribosomal peptide s 54.9 65 0.0022 32.0 10.5 93 129-235 88-181 (570)
62 3ezx_A MMCP 1, monomethylamine 54.7 69 0.0024 27.2 9.1 90 180-271 93-194 (215)
63 4fuq_A Malonyl COA synthetase; 53.9 40 0.0014 32.9 8.6 81 150-235 28-109 (503)
64 3vc3_A Beta-cyanoalnine syntha 53.3 19 0.00064 33.4 5.6 63 25-88 79-141 (344)
65 3o83_A Peptide arylation enzym 51.8 63 0.0022 31.9 9.7 93 128-234 42-135 (544)
66 3dwg_A Cysteine synthase B; su 51.2 27 0.00094 31.9 6.4 58 29-88 70-127 (325)
67 1pg4_A Acetyl-COA synthetase; 51.2 65 0.0022 32.7 9.9 98 129-234 89-187 (652)
68 2d1s_A Luciferase, luciferin 4 50.1 31 0.0011 34.2 7.2 86 149-239 51-137 (548)
69 3kxw_A Saframycin MX1 syntheta 48.3 1.1E+02 0.0036 30.5 10.9 104 128-241 23-130 (590)
70 4e5s_A MCCFLIKE protein (BA_56 47.6 57 0.0019 29.9 7.9 60 28-88 8-86 (331)
71 3fce_A D-alanine--poly(phospho 44.7 34 0.0011 33.5 6.3 69 21-90 174-245 (512)
72 2v03_A Cysteine synthase B; py 44.3 43 0.0015 30.2 6.5 58 29-88 58-115 (303)
73 4eez_A Alcohol dehydrogenase 1 43.2 29 0.00099 31.9 5.3 59 25-87 157-215 (348)
74 3e7w_A D-alanine--poly(phospho 42.6 39 0.0013 33.1 6.5 70 20-90 172-244 (511)
75 3l8c_A D-alanine--poly(phospho 42.4 61 0.0021 31.7 7.9 80 150-234 29-109 (521)
76 2cvi_A 75AA long hypothetical 41.6 66 0.0022 22.1 5.8 50 398-457 15-64 (83)
77 3ju7_A Putative PLP-dependent 40.6 38 0.0013 31.6 5.8 67 15-86 62-135 (377)
78 3hgu_A EHPF; phenazine, antibi 40.3 37 0.0013 31.4 5.7 65 25-92 128-217 (369)
79 2pqm_A Cysteine synthase; OASS 40.2 48 0.0016 30.6 6.2 58 29-88 75-132 (343)
80 1zsy_A Mitochondrial 2-enoyl t 39.9 68 0.0023 29.6 7.4 61 25-87 161-223 (357)
81 4h1h_A LMO1638 protein; MCCF-l 39.4 91 0.0031 28.4 7.9 60 28-88 8-86 (327)
82 1zl0_A Hypothetical protein PA 38.7 99 0.0034 28.0 7.9 62 28-89 13-89 (311)
83 2q3b_A Cysteine synthase A; py 38.6 59 0.002 29.4 6.5 58 29-88 64-121 (313)
84 3s2e_A Zinc-containing alcohol 38.3 99 0.0034 28.1 8.2 61 21-87 157-217 (340)
85 3gqw_A Fatty acid AMP ligase; 38.0 1.1E+02 0.0039 30.1 9.2 87 149-240 48-142 (576)
86 4ej6_A Putative zinc-binding d 37.3 60 0.002 30.2 6.5 57 25-86 176-233 (370)
87 4a2c_A Galactitol-1-phosphate 36.6 81 0.0028 28.8 7.3 64 20-88 149-213 (346)
88 1y7l_A O-acetylserine sulfhydr 36.3 51 0.0018 29.9 5.7 58 29-88 59-116 (316)
89 3sma_A FRBF; N-acetyl transfer 36.0 19 0.00064 32.2 2.5 26 14-40 22-47 (286)
90 3pc3_A CG1753, isoform A; CBS, 35.4 66 0.0023 31.7 6.7 58 29-88 110-167 (527)
91 4aec_A Cysteine synthase, mito 35.1 52 0.0018 31.4 5.7 61 27-88 168-229 (430)
92 2l66_A SSO7C4, transcriptional 35.0 19 0.00065 22.7 1.8 28 13-40 10-37 (53)
93 3tqh_A Quinone oxidoreductase; 34.9 69 0.0024 29.0 6.4 58 25-87 146-203 (321)
94 1mdb_A 2,3-dihydroxybenzoate-A 34.6 89 0.003 30.7 7.6 64 25-90 216-282 (539)
95 2egu_A Cysteine synthase; O-ac 34.5 61 0.0021 29.2 5.9 58 29-88 62-119 (308)
96 3tla_A MCCF; serine protease, 33.7 1.2E+02 0.0042 28.1 7.9 60 28-88 39-117 (371)
97 1ve1_A O-acetylserine sulfhydr 33.2 73 0.0025 28.6 6.2 58 29-88 57-116 (304)
98 3ite_A SIDN siderophore synthe 33.1 2.2E+02 0.0074 28.0 10.3 99 128-233 32-133 (562)
99 3rg2_A Enterobactin synthase c 32.6 1.2E+02 0.004 30.5 8.3 91 130-234 39-130 (617)
100 1z7w_A Cysteine synthase; tran 32.5 62 0.0021 29.4 5.7 60 27-88 60-121 (322)
101 1jbq_A B, cystathionine beta-s 32.4 77 0.0026 30.3 6.4 58 29-88 158-215 (435)
102 4b7c_A Probable oxidoreductase 32.3 1.7E+02 0.0057 26.5 8.7 59 25-86 143-201 (336)
103 3sr3_A Microcin immunity prote 31.9 1.1E+02 0.0038 28.0 7.2 60 28-88 9-87 (336)
104 3dzz_A Putative pyridoxal 5'-p 29.8 1.4E+02 0.0047 27.4 7.8 55 29-87 106-167 (391)
105 2zbc_A 83AA long hypothetical 29.5 1.2E+02 0.0042 20.5 5.6 49 398-456 15-63 (83)
106 1h2b_A Alcohol dehydrogenase; 28.7 86 0.003 28.9 6.0 59 25-87 178-238 (359)
107 1o69_A Aminotransferase; struc 27.4 1.8E+02 0.006 27.0 8.1 64 20-88 61-130 (394)
108 3jv7_A ADH-A; dehydrogenase, n 26.7 89 0.003 28.5 5.7 59 25-87 163-223 (345)
109 4dg8_A PA1221; ANL superfamily 26.7 1.4E+02 0.0047 30.1 7.5 67 25-92 197-265 (620)
110 1mdo_A ARNB aminotransferase; 26.1 98 0.0034 28.6 6.0 63 20-88 68-135 (393)
111 3two_A Mannitol dehydrogenase; 25.1 1.4E+02 0.0049 27.2 6.8 58 22-85 168-225 (348)
112 1yfb_A Transition state regula 25.1 26 0.00088 22.8 1.1 27 14-40 21-47 (59)
113 3fpc_A NADP-dependent alcohol 24.9 67 0.0023 29.5 4.5 58 25-87 160-218 (352)
114 4d9i_A Diaminopropionate ammon 24.8 1.1E+02 0.0039 28.7 6.1 58 30-89 109-167 (398)
115 3ijw_A Aminoglycoside N3-acety 24.7 38 0.0013 29.9 2.5 26 14-40 15-40 (268)
116 3ri6_A O-acetylhomoserine sulf 23.4 1.7E+02 0.0058 27.8 7.1 55 29-87 118-174 (430)
117 3a2b_A Serine palmitoyltransfe 23.3 3E+02 0.01 25.3 8.8 55 29-88 124-181 (398)
118 3zrp_A Serine-pyruvate aminotr 23.2 2.1E+02 0.0071 26.0 7.7 58 29-88 74-135 (384)
119 4gs5_A Acyl-COA synthetase (AM 22.8 77 0.0026 29.2 4.4 65 20-88 66-131 (358)
120 3b8x_A WBDK, pyridoxamine 5-ph 22.8 2.2E+02 0.0075 26.2 7.8 55 28-87 76-135 (390)
121 2nyg_A YOKD protein; PFAM02522 22.7 43 0.0015 29.7 2.5 26 14-40 13-38 (273)
122 3uko_A Alcohol dehydrogenase c 21.7 1.7E+02 0.0058 27.1 6.6 60 23-87 185-245 (378)
123 1eg5_A Aminotransferase; PLP-d 21.4 1.3E+02 0.0044 27.5 5.8 57 29-87 86-146 (384)
124 2djw_A Probable transcriptiona 21.3 1.2E+02 0.0042 21.2 4.4 49 398-456 15-63 (92)
125 3nyq_A Malonyl-COA ligase; A/B 21.0 2.3E+02 0.0079 27.4 7.8 77 149-235 47-124 (505)
126 1e3j_A NADP(H)-dependent ketos 20.7 1.1E+02 0.0037 28.1 5.0 57 25-86 162-218 (352)
127 1pl8_A Human sorbitol dehydrog 20.5 1.1E+02 0.0039 28.0 5.1 57 25-86 165-222 (356)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=5.7e-77 Score=609.43 Aligned_cols=459 Identities=38% Similarity=0.642 Sum_probs=405.3
Q ss_pred HHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCcccCCC--
Q 011116 19 LSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSYKLPS-- 96 (493)
Q Consensus 19 lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~-- 96 (493)
+|++| .+.|+++||+|+++++ |+++++++++||+++|++++|+++.++.+++.++++.++++++|++......+.+
T Consensus 62 lA~~L-~~~Gv~~gd~V~i~~~-~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~ 139 (536)
T 3ni2_A 62 VASGL-NKIGIQQGDVIMLFLP-SSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFA 139 (536)
T ss_dssp HHHHH-HHTTCCTTCEEEEECC-SSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHH
T ss_pred HHHHH-HHcCCCCCCEEEEEcC-CcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHH
Confidence 49999 7799999999999999 9999999999999999999999999999999999999999999999876554432
Q ss_pred ---CCcEEEecCc-----hhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcc
Q 011116 97 ---NLRTILMDSP-----EFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTE 168 (493)
Q Consensus 97 ---~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~ 168 (493)
..+++.++.. .+.++..... .........++++++|+|||||||.||+|.++|+++...+........
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~ 215 (536)
T 3ni2_A 140 RESDVKVMCVDSAPDGCLHFSELTQADE----NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN 215 (536)
T ss_dssp HHHTCEEEESSCCCTTCEETHHHHTSCG----GGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSS
T ss_pred hhcCceEEEecCCCCCccCHHHHhhccc----cccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhcc
Confidence 3445555432 2333333321 122334567899999999999999999999999999887766544321
Q ss_pred cCCCCCCCCCCcEEEEecChhHHHHH-HHHHHHHhcCCeEEEecCCCHHHHHHHHHhcCeeecccChHHHHHHHhcccCC
Q 011116 169 ETDPNEGPPPHPVSFFTLPMFHVFGF-FMLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTD 247 (493)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~ 247 (493)
...++.+++++++.+|++|.+++ ..++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++.....
T Consensus 216 ---~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 292 (536)
T 3ni2_A 216 ---PNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLD 292 (536)
T ss_dssp ---CSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGG
T ss_pred ---ccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccc
Confidence 11245789999999999999998 56788999999999999899999999999999999999999999999887666
Q ss_pred CCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCcccccc---CCCCCCCCCccccccCCceEEEEcCC
Q 011116 248 KYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVI---GPDEAERHGSVGRLAELMEAKIVDPA 324 (493)
Q Consensus 248 ~~~l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~---~~~~~~~~~~~g~p~~~~~~~i~d~~ 324 (493)
..+++++|.+++|||++++++.+++++.||++++++.||+||++.+.+.+. ........+++|+|+++++++|+|++
T Consensus 293 ~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~ 372 (536)
T 3ni2_A 293 KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPE 372 (536)
T ss_dssp GSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTT
T ss_pred cCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCC
Confidence 777899999999999999999999999999999999999999987655432 12223456789999999999999988
Q ss_pred CCccCCCCCceEEEEeCccccccccCCcccccccccCCCeeeccceEEEcCCCcEEEEcccCCeEEeCceeeChHHHHHH
Q 011116 325 TGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHL 404 (493)
Q Consensus 325 ~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~ 404 (493)
++++++.|+.|||+++|+.+++||+++++.+.+.|+.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++
T Consensus 373 ~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~ 452 (536)
T 3ni2_A 373 TGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEAL 452 (536)
T ss_dssp TCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHH
T ss_pred CCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred HhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcceEEEeccccCCCCCccchHHHHHH
Q 011116 405 LHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRRELVTH 484 (493)
Q Consensus 405 l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~ 484 (493)
|.++|+|.+++|++.+++..++.++++++..++...+.++++++++++|+.|++|+.++++++||+|++||++|+.|+++
T Consensus 453 l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~ 532 (536)
T 3ni2_A 453 LIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEK 532 (536)
T ss_dssp HHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC
T ss_pred HHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHH
Confidence 99999999999999999889999999999988888899999999999999999999999999999999999999999987
Q ss_pred Hh
Q 011116 485 AI 486 (493)
Q Consensus 485 ~~ 486 (493)
+.
T Consensus 533 ~~ 534 (536)
T 3ni2_A 533 LA 534 (536)
T ss_dssp --
T ss_pred hc
Confidence 65
No 2
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.7e-76 Score=600.91 Aligned_cols=455 Identities=26% Similarity=0.392 Sum_probs=400.7
Q ss_pred chhhhHHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCccc
Q 011116 14 SARFTLSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSYK 93 (493)
Q Consensus 14 ~~~~~lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~~ 93 (493)
++++ |++| .+.|+++||+|+++++ |+++++++++||+++|++++|+++.++.+++.+++++++++++|++++....
T Consensus 38 ~~~l--A~~L-~~~Gv~~gd~V~i~~~-~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~ 113 (503)
T 4fuq_A 38 AGRV--ANVL-VARGLQVGDRVAAQTE-KSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDG 113 (503)
T ss_dssp HHHH--HHHH-HHTTCCTTCEEEEECC-SCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTT
T ss_pred HHHH--HHHH-HHcCCCCCCEEEEECC-CCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHH
Confidence 4444 9999 7789999999999999 9999999999999999999999999999999999999999999999876554
Q ss_pred CCC-----CCcEEEecCch---hhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhh
Q 011116 94 LPS-----NLRTILMDSPE---FISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYH 165 (493)
Q Consensus 94 ~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~ 165 (493)
+.+ ...+..++... +....... ..........++++++++|||||||.||+|.++|.++.........
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~ 189 (503)
T 4fuq_A 114 IAAIAAKVGATVETLGPDGRGSLTDAAAGA----SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVD 189 (503)
T ss_dssp THHHHHHHTCEEEECCTTSCSHHHHHHHTS----CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHhhcCceEEEecCCcccccchhhhcC----CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHH
Confidence 432 22334443221 11111111 1122233566899999999999999999999999999998888777
Q ss_pred hcccCCCCCCCCCCcEEEEecChhHHHHH-HHHHHHHhcCCeEEEecCCCHHHHHHHHHhcCeeecccChHHHHHHHhcc
Q 011116 166 VTEETDPNEGPPPHPVSFFTLPMFHVFGF-FMLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINSK 244 (493)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~ 244 (493)
.+. +.+++++++.+|++|.+++ ...+.+++.|+++++.+.++++.+++.++ ++|++.++|+++..+++..
T Consensus 190 ~~~-------~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~ 260 (503)
T 4fuq_A 190 YWR-------FTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSP 260 (503)
T ss_dssp HTT-------CCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCT
T ss_pred HhC-------CCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCC
Confidence 764 4899999999999999997 45778899999999999899999999998 8999999999999999987
Q ss_pred cCCCCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCccccccCCCCCCCCCccccccCCceEEEEcCC
Q 011116 245 LTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIVDPA 324 (493)
Q Consensus 245 ~~~~~~l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~ 324 (493)
......++++|.+++||+++++++.+++.+.+ ++++++.||+||++..... ........+++|+|+++++++|+|++
T Consensus 261 ~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~--~~~~~~~~~~~G~p~~~~~~~i~d~~ 337 (503)
T 4fuq_A 261 RLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSN--PYDGDRVPGAVGPALPGVSARVTDPE 337 (503)
T ss_dssp TCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCC--CSSSCCCTTEEEEBCTTCEEEEECTT
T ss_pred CccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCccccc--CCCCCCcCCccccCCCCeEEEEEECC
Confidence 76677788999999999999999999999998 8899999999999876442 22334466789999999999999999
Q ss_pred CCccCCCCCceEEEEeCccccccccCCcccccccccCCCeeeccceEEEcCCCcEEEEcccCCeEEeCceeeChHHHHHH
Q 011116 325 TGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHL 404 (493)
Q Consensus 325 ~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~ 404 (493)
++++++.|+.|||+++|+.+++||+++++.+.+.|..+|||+|||++++++||.+++.||.||+||++|++|+|.+||++
T Consensus 338 ~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~ 417 (503)
T 4fuq_A 338 TGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESE 417 (503)
T ss_dssp TCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHH
T ss_pred CCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred HhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcceEEEeccccCCCCCccchHHHHHH
Q 011116 405 LHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRRELVTH 484 (493)
Q Consensus 405 l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~ 484 (493)
|.++|+|.+++|++.+++..++.+++++++.++...+.++++++++++|+.|++|+.|+++++||+|++||++|+.|+++
T Consensus 418 l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 497 (503)
T 4fuq_A 418 IDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRET 497 (503)
T ss_dssp HHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHH
T ss_pred HHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHH
Confidence 99999999999999999988999999999998888899999999999999999999999999999999999999999999
Q ss_pred HhhC
Q 011116 485 AISG 488 (493)
Q Consensus 485 ~~~~ 488 (493)
+.+.
T Consensus 498 ~~~~ 501 (503)
T 4fuq_A 498 YKDI 501 (503)
T ss_dssp TTTT
T ss_pred HHHh
Confidence 8653
No 3
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=2.9e-75 Score=597.69 Aligned_cols=460 Identities=36% Similarity=0.566 Sum_probs=399.8
Q ss_pred chhhhHHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCccc
Q 011116 14 SARFTLSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSYK 93 (493)
Q Consensus 14 ~~~~~lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~~ 93 (493)
++++ |++| .+.|+++||+|+++++ |+++++++++||+++|++++|+++.++.+++.++++.++++++|++++....
T Consensus 62 ~~~l--A~~L-~~~Gv~~gd~V~i~~~-n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 137 (548)
T 2d1s_A 62 SCCL--GKAL-QNYGLVVDGRIALCSE-NCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDK 137 (548)
T ss_dssp HHHH--HHHH-HHHTCCTTCEEEEECS-SCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHH
T ss_pred HHHH--HHHH-HHcCCCCCCEEEEEeC-CchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHH
Confidence 4444 9999 7789999999999999 9999999999999999999999999999999999999999999999876554
Q ss_pred CCC-------CCcEEEecCc-------hhhhhhccCcccccccCCCCCC------CCCCeEEEEccCCCCCCccceecch
Q 011116 94 LPS-------NLRTILMDSP-------EFISLLNQNEDVADFANSNMTV------YQSDPAAILYSSGTTGKVKGVLLSH 153 (493)
Q Consensus 94 ~~~-------~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~TSGTTG~pK~v~~t~ 153 (493)
+.+ ...++.++.. .|.++....... ....... .++++++++|||||||.||+|.++|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh 214 (548)
T 2d1s_A 138 VITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPP---GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTH 214 (548)
T ss_dssp HHHHHHHSTTCCEEEETTCSSCBTTBCBHHHHHHHTSCT---TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEH
T ss_pred HHHHhcCCCCCCEEEEeCCcccccccccHHHHHhcCccc---cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecH
Confidence 322 2334545432 244443322100 0111111 2389999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHH-HHHHHhcCCeEEEecCCCHHHHHHHHHhcCeeeccc
Q 011116 154 LNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFM-LVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPV 232 (493)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~l~~ 232 (493)
+++...+......+. ..++.+++++++.+|++|..++.. ++.++ .|+++++.+.++++.+++.++++++|++++
T Consensus 215 ~~~~~~~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~ 289 (548)
T 2d1s_A 215 ENIVTRFSHARDPIY----GNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVIL 289 (548)
T ss_dssp HHHHHHHHHHTCTTT----SCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHhhchhh----ccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEe
Confidence 999988776655421 024578999999999999999865 56666 999999998899999999999999999999
Q ss_pred ChHHHHHHHhcccCCCCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCccccccCCCCCCCCCccccc
Q 011116 233 SPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRL 312 (493)
Q Consensus 233 ~P~~~~~l~~~~~~~~~~l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p 312 (493)
+|+++..|++.......+++++|.+++|||++++++.+++.+.|+++.+++.||+||++..++. ........+++|+|
T Consensus 290 ~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~--~~~~~~~~~~~G~~ 367 (548)
T 2d1s_A 290 VPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIII--TPEGDDKPGASGKV 367 (548)
T ss_dssp CHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE--CCTTCCCTTCCBEE
T ss_pred cHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeee--cCcccCCCCCCCcc
Confidence 9999999998765555678999999999999999999999999988899999999999876654 22223466789999
Q ss_pred cCCceEEEEcCCCCccCCCCCceEEEEeCccccccccCCcccccccccCCCeeeccceEEEcCCCcEEEEcccCCeEEeC
Q 011116 313 AELMEAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYK 392 (493)
Q Consensus 313 ~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~ 392 (493)
+++++++|+|++++++++.|+.|||+++|+.+++||+++++.+.+.|+.+|||+|||+|++++||.+++.||.||+||++
T Consensus 368 ~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~ 447 (548)
T 2d1s_A 368 VPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYK 447 (548)
T ss_dssp CTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBT
T ss_pred CCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEEC
Confidence 99999999998889999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred ceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcc-eEEEeccccCC
Q 011116 393 AYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVAPYKKIR-RVAFINSIPKS 471 (493)
Q Consensus 393 G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~~~~~lP~t 471 (493)
|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++.++...+.++++++++++|+.|++|+ .++++++||+|
T Consensus 448 G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t 527 (548)
T 2d1s_A 448 GYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKG 527 (548)
T ss_dssp TCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBC
T ss_pred CEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHhccccccccccEEEccCCCCC
Confidence 99999999999999999999999999999888999999999988777889999999999999999999 99999999999
Q ss_pred CCCccchHHHHHHHhh
Q 011116 472 TAGKILRRELVTHAIS 487 (493)
Q Consensus 472 ~~GK~~r~~l~~~~~~ 487 (493)
++||++|+.|++++.+
T Consensus 528 ~~GKi~r~~L~~~~~~ 543 (548)
T 2d1s_A 528 LTGKIDGRAIREILKK 543 (548)
T ss_dssp TTSCBCHHHHHHHHHS
T ss_pred CcchhHHHHHHHHHhh
Confidence 9999999999998865
No 4
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.3e-74 Score=588.98 Aligned_cols=454 Identities=26% Similarity=0.415 Sum_probs=392.7
Q ss_pred chhhhHHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCccc
Q 011116 14 SARFTLSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSYK 93 (493)
Q Consensus 14 ~~~~~lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~~ 93 (493)
++++ |++| .+.|+++||+|+++++ |++++++++|||+++|++++|+++.++.+++.++++.++++++|++......
T Consensus 53 ~~~l--A~~L-~~~Gv~~gd~V~i~~~-~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 128 (517)
T 3r44_A 53 ANRC--ADVL-TALGIAKGDRVALLMP-NSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPV 128 (517)
T ss_dssp HHHH--HHHH-HHTTCCTTCEEEEECC-SSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred HHHH--HHHH-HHcCCCCcCEEEEEcC-CCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHH
Confidence 4555 9999 7889999999999999 9999999999999999999999999999999999999999999998765443
Q ss_pred CCC-------CCcEEEe-cCchhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhh
Q 011116 94 LPS-------NLRTILM-DSPEFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYH 165 (493)
Q Consensus 94 ~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~ 165 (493)
+.. ...++.+ ....+........ .........++++++|+|||||||.||+|.++|+++...+.....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~ 204 (517)
T 3r44_A 129 IDAIRAQADPPGTVTDWIGADSLAERLRSAA----ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAS 204 (517)
T ss_dssp HHHHHHSSSCCTTCCEEEEHHHHHHHHHHCC----CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccEEEEccCcccHHHHhhccC----cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHH
Confidence 221 1111111 1122333333221 122334567899999999999999999999999999998888777
Q ss_pred hcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEEEecCCCHHHHHHHHHhcCeeecccChHHHHHHHhccc
Q 011116 166 VTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKL 245 (493)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~ 245 (493)
.+. +.+++++++.+|++|..++...+.++..|+++++.+.+++..+++.++++++|++.++|+++..|.+...
T Consensus 205 ~~~-------~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 277 (517)
T 3r44_A 205 TID-------VRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPE 277 (517)
T ss_dssp HSC-------CCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHH
T ss_pred hcC-------CCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc
Confidence 763 4889999999999999999776666669999999999999999999999999999999999999988766
Q ss_pred CCCCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCccccccCCCCCCCCCccccccCCceEEEEcCCC
Q 011116 246 TDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIVDPAT 325 (493)
Q Consensus 246 ~~~~~l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~ 325 (493)
....+++++|.+++|||++++++.+++.+. ++++++.||+||+++.++...........+++|+|.++++++++| ++
T Consensus 278 ~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~ 354 (517)
T 3r44_A 278 FAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DD 354 (517)
T ss_dssp HHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TT
T ss_pred cccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEEC-CC
Confidence 556678899999999999999999999987 899999999999988766543333345678899999999999999 67
Q ss_pred CccCCCCCceEEEEeCccccccccCCcccccccccCCCeeeccceEEEcCCCcEEEEcccCCeEEeCceeeChHHHHHHH
Q 011116 326 GEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLL 405 (493)
Q Consensus 326 ~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l 405 (493)
+.+++.| .|||+++|+.++.||+++++.+.+.| .+|||+|||+|++++||.+++.||.||+||++|++|+|.+||++|
T Consensus 355 ~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l 432 (517)
T 3r44_A 355 GVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVI 432 (517)
T ss_dssp SCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHH
T ss_pred CCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHH
Confidence 8888888 89999999999999999999999999 589999999999999999999999999999999999999999999
Q ss_pred hcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcceEEEeccccCCCCCccchHHHHHHH
Q 011116 406 HSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRRELVTHA 485 (493)
Q Consensus 406 ~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~ 485 (493)
.++|+|.+++|++.+++..++.+++++ ..++...+.++++++++++|+.|++|+.++++++||+|++||++|+.|++++
T Consensus 433 ~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~ 511 (517)
T 3r44_A 433 IGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQY 511 (517)
T ss_dssp TTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHH
T ss_pred HhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHH
Confidence 999999999999999988888888887 5566678889999999999999999999999999999999999999999998
Q ss_pred hhC
Q 011116 486 ISG 488 (493)
Q Consensus 486 ~~~ 488 (493)
.+.
T Consensus 512 ~~~ 514 (517)
T 3r44_A 512 SAT 514 (517)
T ss_dssp GGG
T ss_pred Hhh
Confidence 764
No 5
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=4.8e-75 Score=596.93 Aligned_cols=460 Identities=28% Similarity=0.488 Sum_probs=359.6
Q ss_pred chhhhHHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCccc
Q 011116 14 SARFTLSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSYK 93 (493)
Q Consensus 14 ~~~~~lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~~ 93 (493)
++++ |++| .+.|+++||+|+++++ |++++++++|||+++|++++|+++.++.+++.++++.++++++|++......
T Consensus 62 ~~~l--A~~L-~~~Gv~~gd~V~i~~~-~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~ 137 (549)
T 3g7s_A 62 TKKL--ASGI-SRKGVRKGEHVGVCIP-NSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYEN 137 (549)
T ss_dssp HHHH--HHHH-HHTTCCTTCEEEEECC-SSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHH
T ss_pred HHHH--HHHH-HHcCCCCCCEEEEECC-CCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHH
Confidence 4444 9999 7789999999999999 9999999999999999999999999999999999999999999999876544
Q ss_pred CCC-----CCc-EEEecC--chhhhhhccCcccccccCCCCCCC-CCCeEEEEccCCCCCCccceecchHHHHHHHHHhh
Q 011116 94 LPS-----NLR-TILMDS--PEFISLLNQNEDVADFANSNMTVY-QSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYY 164 (493)
Q Consensus 94 ~~~-----~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~ 164 (493)
+.+ ... ++.++. ..+.++..... . ........ ++++++|+|||||||.||+|.++|.++...+....
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 213 (549)
T 3g7s_A 138 FKPVLEKTGVERVFVVGGEVNSLSEVMDSGS---E-DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLA 213 (549)
T ss_dssp HHHHHTTSCCCEEEEETCSSSCHHHHHHHSC---S-CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHhhCCCcEEEEeCCCCcCHHHHHhcCc---c-ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHH
Confidence 321 222 333321 23444433321 1 11122233 48999999999999999999999999999888877
Q ss_pred hhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEEEecCCCHHHHHHHHHhcCeeecccChHHHHHHHhcc
Q 011116 165 HVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINSK 244 (493)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~ 244 (493)
..+. +.+++++++.+|++|..++..++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++..
T Consensus 214 ~~~~-------~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 286 (549)
T 3g7s_A 214 VATG-------LSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTL 286 (549)
T ss_dssp HHHC-------CCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHH
T ss_pred HHcC-------CCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhh
Confidence 7764 488999999999999999977888999999999999999999999999999999999999999998876
Q ss_pred cCCC--CCCCCeeEEEecCCCCCHHHHHHHHHh----C--CCCceeccccccccCCccccccCCCCCCCCCccccccCCc
Q 011116 245 LTDK--YDLSSLQLLGCGGAPLGKEVTLKFKEK----F--PNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELM 316 (493)
Q Consensus 245 ~~~~--~~l~~lr~v~~~Ge~~~~~~~~~~~~~----~--~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~ 316 (493)
.... .+++++|.+++||+++++++.+++.+. | |++++++.||+||++.+++... ........++|+|++++
T Consensus 287 ~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~~G~p~~~~ 365 (549)
T 3g7s_A 287 ESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNP-PLRLDKSTTQGVPMSDI 365 (549)
T ss_dssp HHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECC-GGGGGGTTSCCEECTTC
T ss_pred hhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCC-ccccCcCCCccccCCCC
Confidence 5433 568899999999999999999999987 6 2389999999999988766522 22224667899999999
Q ss_pred eEEEEcCCCCccCCCCCceEEEEeCccccccccCCccccccccc--CCC--eeeccceEEEcCCCcEEEEcccCCeEEeC
Q 011116 317 EAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVH--SEG--WLKTGDLCYFDSNGFLFIVDRLKELIKYK 392 (493)
Q Consensus 317 ~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~--~~~--~~~TgD~~~~~~~g~~~~~GR~~d~i~~~ 392 (493)
+++|+|++++++++.|+.|||+++|+.+++||+++++.+.+.|. .+| ||+|||+|++++||.+++.||.||+||++
T Consensus 366 ~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~ 445 (549)
T 3g7s_A 366 ELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYK 445 (549)
T ss_dssp EEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC-------
T ss_pred EEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEEC
Confidence 99999989999999999999999999999999999999999873 466 99999999999999999999999999999
Q ss_pred ceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCC--CCCCHHHHHHHHHhcCCCCCCcceEEEeccccC
Q 011116 393 AYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPG--SNITEAEIMDFIAKQVAPYKKIRRVAFINSIPK 470 (493)
Q Consensus 393 G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~ 470 (493)
|++|+|.+||++|.++|+|.+++|++.+++..++.+++++++.++ ...+.++++++++++|+.|++|+.++++++||+
T Consensus 446 G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~ 525 (549)
T 3g7s_A 446 GYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPR 525 (549)
T ss_dssp -----CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC-
T ss_pred CEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCC
Confidence 999999999999999999999999999998889999999999876 567889999999999999999999999999999
Q ss_pred CCCCccchHHHHHHHhhCC
Q 011116 471 STAGKILRRELVTHAISGN 489 (493)
Q Consensus 471 t~~GK~~r~~l~~~~~~~~ 489 (493)
|++||++|+.|+++..+.+
T Consensus 526 t~~GKi~R~~L~~~~~~~~ 544 (549)
T 3g7s_A 526 TASGKLLRRLLREKEAEGH 544 (549)
T ss_dssp -------------------
T ss_pred CCCcCEeHHHHHHHhhccc
Confidence 9999999999999988754
No 6
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=4.7e-74 Score=587.89 Aligned_cols=456 Identities=23% Similarity=0.368 Sum_probs=391.4
Q ss_pred cchhhhHHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCcc
Q 011116 13 SSARFTLSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSY 92 (493)
Q Consensus 13 ~~~~~~lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~ 92 (493)
+++++ |++| .+.|+++||+|+++++ |+++++++++||+++|++++|+++.++.+++.++++.+++++++++++...
T Consensus 59 ~~~~l--A~~L-~~~Gv~~gd~V~i~~~-~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 134 (539)
T 1mdb_A 59 RADRL--AAGF-QKLGIQQKDRVVVQLP-NIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSG 134 (539)
T ss_dssp HHHHH--HHHH-HHHTCCTTCEEEECCC-SSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETT
T ss_pred HHHHH--HHHH-HHcCCCCCCEEEEEcC-CcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEecccccc
Confidence 34444 9999 7789999999999999 999999999999999999999999999999999999999999999875321
Q ss_pred --------cCC---CCCc-EEEecC-chhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHHHHH
Q 011116 93 --------KLP---SNLR-TILMDS-PEFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAI 159 (493)
Q Consensus 93 --------~~~---~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~ 159 (493)
.+. ...+ ++..+. ..+..+..... . ........++++++++|||||||.||+|.++|+++...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~ 210 (539)
T 1mdb_A 135 FDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHT---E-PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYS 210 (539)
T ss_dssp EEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCCC---C-CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHH
T ss_pred ccHHHHHHHHHhcCCCccEEEEcCCccchhhhhhccc---c-ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHH
Confidence 110 1222 222222 12322222111 1 11123456789999999999999999999999999988
Q ss_pred HHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHH--HHHHHHhcCCeEEEecCCCHHHHHHHHHhcCeeecccChHHH
Q 011116 160 IAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFF--MLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPLI 237 (493)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~--~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~~ 237 (493)
+......+. +.+++++++.+|++|.+++. .++.++..|+++++.+.+++..+++.++++++|++.++|+++
T Consensus 211 ~~~~~~~~~-------~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~ 283 (539)
T 1mdb_A 211 LKRSVEVCW-------LDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLA 283 (539)
T ss_dssp HHHHHHHHT-------CCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHH
T ss_pred HHHHHHhhC-------CCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHH
Confidence 887776663 47899999999999999985 589999999999999889999999999999999999999999
Q ss_pred HHHHhcccCCCCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCccccccCCCCCCCCCccccccCC-c
Q 011116 238 VAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAEL-M 316 (493)
Q Consensus 238 ~~l~~~~~~~~~~l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~-~ 316 (493)
..+++.......+++++|.+++|||++++++.+++++.+ ++++++.||+||++..... ..........++|+|+++ .
T Consensus 284 ~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~-~~~~~~~~~~~~G~p~~~~~ 361 (539)
T 1mdb_A 284 MVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYTR-LDDPEEIIVNTQGKPMSPYD 361 (539)
T ss_dssp HHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTTSCEEECC-TTSCHHHHHHCCCEESSTTC
T ss_pred HHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEcCCCCcccccC-CCCcHHhcCCCCCcccCCCc
Confidence 999887665666789999999999999999999999999 8999999999996533222 111111234678999975 5
Q ss_pred eEEEEcCCCCccCCCCCceEEEEeCccccccccCCcccccccccCCCeeeccceEEEcCCCcEEEEcccCCeEEeCceee
Q 011116 317 EAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQV 396 (493)
Q Consensus 317 ~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i 396 (493)
+++|+| +++++++.|+.|||+++|+.+++||+++++.+.+.|..+|||+|||+|++++||++++.||.||+||++|++|
T Consensus 362 ~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v 440 (539)
T 1mdb_A 362 ESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKV 440 (539)
T ss_dssp EEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEE
T ss_pred eEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEE
Confidence 899999 6789999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCCHHHHHHHHHhc-CCCCCCcceEEEeccccCCCCCc
Q 011116 397 PPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQ-VAPYKKIRRVAFINSIPKSTAGK 475 (493)
Q Consensus 397 ~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~~~~lP~t~~GK 475 (493)
+|.+||++|.++|+|.+++|++.+++..++.+++++++.. ...+.++++++++++ |+.|++|+.++++++||+|++||
T Consensus 441 ~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GK 519 (539)
T 1mdb_A 441 AAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD-EAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGK 519 (539)
T ss_dssp CHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS-SCCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSC
T ss_pred CHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC-CCCCHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcC
Confidence 9999999999999999999999999888899999999873 456789999999997 99999999999999999999999
Q ss_pred cchHHHHHHHhh
Q 011116 476 ILRRELVTHAIS 487 (493)
Q Consensus 476 ~~r~~l~~~~~~ 487 (493)
++|+.|++++.+
T Consensus 520 i~r~~L~~~~~~ 531 (539)
T 1mdb_A 520 VSKKALREAISE 531 (539)
T ss_dssp BCHHHHHHHHHH
T ss_pred EeHHHHHHHHHH
Confidence 999999998865
No 7
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2.3e-73 Score=594.36 Aligned_cols=459 Identities=23% Similarity=0.307 Sum_probs=391.6
Q ss_pred chhhhHHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCccc
Q 011116 14 SARFTLSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSYK 93 (493)
Q Consensus 14 ~~~~~lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~~ 93 (493)
++++ |++| .+.|+++||+|+++++ |++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.....
T Consensus 117 v~~l--A~~L-~~~Gv~~Gd~V~i~~~-~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~ 192 (652)
T 1pg4_A 117 VCRF--ANTL-LDLGIKKGDVVAIYMP-MVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRA 192 (652)
T ss_dssp HHHH--HHHH-HHHTCCTTCEEEEECC-SSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEET
T ss_pred HHHH--HHHH-HHcCCCCCCEEEEEeC-CCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccC
Confidence 4444 9999 7789999999999999 9999999999999999999999999999999999999999999998764321
Q ss_pred -------------CCC----C-CcEEEecCc------------hhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCC
Q 011116 94 -------------LPS----N-LRTILMDSP------------EFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTT 143 (493)
Q Consensus 94 -------------~~~----~-~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTT 143 (493)
+.. . ..++.++.. .|.+++.... .........++++++|+||||||
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~ilyTSGTT 268 (652)
T 1pg4_A 193 GRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKAS----PEHQPEAMNAEDPLFILYTSGST 268 (652)
T ss_dssp TEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEEHHHHHTTSC----SCCCCCCEETTSEEEEEEECCSS
T ss_pred CcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCceeHHHHHhhcC----CCCCccccCCCCCEEEEeccCCC
Confidence 000 1 224444321 2444433221 11223345679999999999999
Q ss_pred CCccceecchHHHHHHHHH-hhhhcccCCCCCCCCCCcEEEEecChhHHHHH-HHHHHHHhcCCeEEEecC----CCHHH
Q 011116 144 GKVKGVLLSHLNVIAIIAG-YYHVTEETDPNEGPPPHPVSFFTLPMFHVFGF-FMLVRAASKGETLVFMER----FDFEK 217 (493)
Q Consensus 144 G~pK~v~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~ 217 (493)
|.||||+++|.++...... ....+ ++.++|++++.+|++|..++ +.++.++..|+++++.+. .++..
T Consensus 269 G~PKgV~~sh~~~~~~~~~~~~~~~-------~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~ 341 (652)
T 1pg4_A 269 GKPKGVLHTTGGYLVYAATTFKYVF-------DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPAR 341 (652)
T ss_dssp SSCEEEEEESHHHHHHHHHHHHHHT-------TCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTH
T ss_pred CCCceEEECchHHHHHHHHHHHHhc-------CCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHH
Confidence 9999999999998876643 33334 34789999999999999998 778999999999999864 57899
Q ss_pred HHHHHHhcCeeecccChHHHHHHHhccc--CCCCCCCCeeEEEecCCCCCHHHHHHHHHhCC--CCceeccccccccCCc
Q 011116 218 MLKAVENYRVTYMPVSPPLIVAFINSKL--TDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFP--NVEIRQGYGLTETGGA 293 (493)
Q Consensus 218 ~~~~l~~~~~t~l~~~P~~~~~l~~~~~--~~~~~l~~lr~v~~~Ge~~~~~~~~~~~~~~~--~~~v~~~yG~tE~g~~ 293 (493)
+++.++++++|+++++|++++.|++... ....+++++|.+++|||++++++.+++.+.++ ++++++.||+||++..
T Consensus 342 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~ 421 (652)
T 1pg4_A 342 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGF 421 (652)
T ss_dssp HHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSC
T ss_pred HHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccc
Confidence 9999999999999999999999988654 34456899999999999999999999999983 2899999999999876
Q ss_pred cccccCCCCCCCCCccccccCCceEEEEcCCCCccCCCCCceEEEEeC--ccccccccCCccccccccc--CCCeeeccc
Q 011116 294 GSRVIGPDEAERHGSVGRLAELMEAKIVDPATGEALPPGQKGELWLRG--PTIMKGYVGDDKATSETVH--SEGWLKTGD 369 (493)
Q Consensus 294 ~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~--~~~~~~TgD 369 (493)
++...........+++|+|+++++++|+| +++++++.|+.|||+++| |.+++||+++++.+.+.+. .+|||+|||
T Consensus 422 ~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGD 500 (652)
T 1pg4_A 422 MITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGD 500 (652)
T ss_dssp SBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEE
T ss_pred eecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCc
Confidence 65432222234668999999999999999 679999999999999999 7899999999988877653 378999999
Q ss_pred eEEEcCCCcEEEEcccCCeEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCC---HHHHH
Q 011116 370 LCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNIT---EAEIM 446 (493)
Q Consensus 370 ~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~ 446 (493)
+|++++||++++.||+||+||++|++|++.+||++|.+||+|.+++|++.+++..++.++++|++.++...+ .++|+
T Consensus 501 lg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~ 580 (652)
T 1pg4_A 501 GARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVR 580 (652)
T ss_dssp EEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHH
T ss_pred EEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988899999999998775554 47899
Q ss_pred HHHHhcCCCCCCcceEEEeccccCCCCCccchHHHHHHHhhC
Q 011116 447 DFIAKQVAPYKKIRRVAFINSIPKSTAGKILRRELVTHAISG 488 (493)
Q Consensus 447 ~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~~~ 488 (493)
++++++|++|++|+.|+++++||+|++||++|+.|++.+...
T Consensus 581 ~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 581 NWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp HHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred HHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCC
Confidence 999999999999999999999999999999999999998875
No 8
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.2e-74 Score=594.14 Aligned_cols=466 Identities=36% Similarity=0.564 Sum_probs=296.6
Q ss_pred chhhhHHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCccc
Q 011116 14 SARFTLSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSYK 93 (493)
Q Consensus 14 ~~~~~lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~~ 93 (493)
++++ |++| .+.|+++||+|+++++ |++++++++|||+++|++++|+++.++.+++.++++.++++++|++.+....
T Consensus 60 ~~~l--A~~L-~~~Gv~~gd~V~i~~~-n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 135 (550)
T 3rix_A 60 SVRL--AEAM-KRYGLNTNHRIVVCSE-NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQK 135 (550)
T ss_dssp HHHH--HHHH-HHHTCCTTCEEEEECS-SCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHH
T ss_pred HHHH--HHHH-HHhCCCCCCEEEEEcC-CcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHH
Confidence 4455 9999 7789999999999999 9999999999999999999999999999999999999999999999875553
Q ss_pred CCC-------CCcEEEecCc-------hhhhhhccCccc-c--cccCCCCCCCCCCeEEEEccCCCCCCccceecchHHH
Q 011116 94 LPS-------NLRTILMDSP-------EFISLLNQNEDV-A--DFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNV 156 (493)
Q Consensus 94 ~~~-------~~~~~~~~~~-------~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~ 156 (493)
+.+ ...++.++.. .+..+....... . ..........++++++|+|||||||.||+|.++|+++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~ 215 (550)
T 3rix_A 136 ILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTA 215 (550)
T ss_dssp HHHHHHHCTTCCEEEETTCSSCBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHH
T ss_pred HHHHHhhCCCcceEEEEcCCccccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHH
Confidence 321 2223443321 122222211100 0 0011112234578999999999999999999999999
Q ss_pred HHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEEEecCCCHHHHHHHHHhcCeeecccChHH
Q 011116 157 IAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPL 236 (493)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~ 236 (493)
...+......+. ..++.+++++++.+|++|.+++...+.++..|+++++.+.++++.+++.++++++|++.++|++
T Consensus 216 ~~~~~~~~~~~~----~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~ 291 (550)
T 3rix_A 216 CVRFSHARDPIF----GNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTL 291 (550)
T ss_dssp HHHHHHHTCTTT----SCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHH
T ss_pred HHHHHHhhhhhc----cccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHH
Confidence 887766554421 0245789999999999999999888899999999999998999999999999999999999999
Q ss_pred HHHHHhcccCCCCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCccccccCCCCCCCCCccccccCCc
Q 011116 237 IVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELM 316 (493)
Q Consensus 237 ~~~l~~~~~~~~~~l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~ 316 (493)
+..|++.......+++++|.+++|||++++++.+++.+.|+...+++.||+||++..++.. .......+++|+|++++
T Consensus 292 ~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~--~~~~~~~~~vG~~~~~~ 369 (550)
T 3rix_A 292 FSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT--PEGDDKPGAVGKVVPFF 369 (550)
T ss_dssp HHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEEC--CTTCCCTTEEEEECTTC
T ss_pred HHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecC--CCCCCCCCCcccccCCc
Confidence 9999998776677789999999999999999999999999444599999999999766552 23345678899999999
Q ss_pred eEEEEcCCCCccCCCCCceEEEEeCccccccccCCcccccccccCCCeeeccceEEEcCCCcEEEEcccCCeEEeCceee
Q 011116 317 EAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQV 396 (493)
Q Consensus 317 ~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i 396 (493)
+++|+|++++++++.|+.|||+++|+.++.||+++++.+.+.|+.+|||+|||+|++++||++++.||.||+||++|++|
T Consensus 370 ~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v 449 (550)
T 3rix_A 370 EAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 449 (550)
T ss_dssp EEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC--------------
T ss_pred EEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEE
Confidence 99999988999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcc-eEEEeccccCCCCCc
Q 011116 397 PPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVAPYKKIR-RVAFINSIPKSTAGK 475 (493)
Q Consensus 397 ~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~~~~~~lP~t~~GK 475 (493)
+|.+||++|.++|+|.+++|++.+++..++.+++++++.++...+.+++++++++++++++.|. .++++++||+|++||
T Consensus 450 ~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GK 529 (550)
T 3rix_A 450 APAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGK 529 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcc
Confidence 9999999999999999999999999888999999999988877888999999999999887655 699999999999999
Q ss_pred cchHHHHHHHhhCC
Q 011116 476 ILRRELVTHAISGN 489 (493)
Q Consensus 476 ~~r~~l~~~~~~~~ 489 (493)
++|+.|++++.+..
T Consensus 530 i~r~~L~~~~~~~~ 543 (550)
T 3rix_A 530 LDARKIREILIKAK 543 (550)
T ss_dssp --------------
T ss_pred eeHHHHHHHHHhhc
Confidence 99999999997754
No 9
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=2.4e-73 Score=586.21 Aligned_cols=459 Identities=22% Similarity=0.334 Sum_probs=371.3
Q ss_pred cchhhhHHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCc-
Q 011116 13 SSARFTLSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTS- 91 (493)
Q Consensus 13 ~~~~~~lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~- 91 (493)
+++++ |++| .+.|+++||+|+++++ |++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+..
T Consensus 95 ~~~~~--A~~L-~~~Gv~~Gd~V~l~~~-~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~ 170 (580)
T 3etc_A 95 YSDKA--ANFF-VKHGIGKGDYVMLTLK-SRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDV 170 (580)
T ss_dssp HHHHH--HHHH-HHTTCCTTCEEEEECT-TCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTH
T ss_pred HHHHH--HHHH-HHcCCCCCCEEEEEcC-CCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhH
Confidence 35555 9999 7889999999999999 99999999999999999999999999999999999999999999987654
Q ss_pred -ccCC-------CC-CcEEEecCc------hhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHH
Q 011116 92 -YKLP-------SN-LRTILMDSP------EFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNV 156 (493)
Q Consensus 92 -~~~~-------~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~ 156 (493)
..+. .. ...+.++.. .+...+.................++++++++|||||||.||+|.++|.++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~ 250 (580)
T 3etc_A 171 PEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYP 250 (580)
T ss_dssp HHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHH
T ss_pred HHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHH
Confidence 2221 11 334444422 23333322211000011112467899999999999999999999999988
Q ss_pred HHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHH-HHHHHHhcCCeEEEe--cCCCHHHHHHHHHhcCeeecccC
Q 011116 157 IAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFF-MLVRAASKGETLVFM--ERFDFEKMLKAVENYRVTYMPVS 233 (493)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~-~~~~~l~~G~~~~~~--~~~~~~~~~~~l~~~~~t~l~~~ 233 (493)
...+....... ++.+++++++..|++|..+.+ .++.++..|+++++. ..+++..+++.++++++|+++++
T Consensus 251 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~ 323 (580)
T 3etc_A 251 LGHILTAKYWQ-------NVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAP 323 (580)
T ss_dssp HHHHHHHHTTS-------CCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHHHhh-------CCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEcc
Confidence 87666544443 347889999999999988875 578889999999887 56899999999999999999999
Q ss_pred hHHHHHHHhcccCCCCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCccccccCCCCCCCCCcccccc
Q 011116 234 PPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLA 313 (493)
Q Consensus 234 P~~~~~l~~~~~~~~~~l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~ 313 (493)
|++++.|++.. ....+++++|.+++|||++++++.++|.+.+ ++++++.||+||++..++.. .......+++|+|+
T Consensus 324 P~~~~~l~~~~-~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~--~~~~~~~~~~G~p~ 399 (580)
T 3etc_A 324 PTIYRFLIKED-LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATF--PWMEPKPGSIGKPT 399 (580)
T ss_dssp HHHHHHHHTSC-C---CCTTCCEEEECSSCCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEECC--TTSCCCTTCCBEEC
T ss_pred HHHHHHHHhcc-cccCCCccceEEEEccCCCCHHHHHHHHHHh-CCeEecccccccccceeecC--CCCCCCCCccccCC
Confidence 99999998763 3455689999999999999999999999988 89999999999998765542 22345678999999
Q ss_pred CCceEEEEcCCCCccCCCCCceEEEEeC-----ccccccccCCcccccccccCCCeeeccceEEEcCCCcEEEEcccCCe
Q 011116 314 ELMEAKIVDPATGEALPPGQKGELWLRG-----PTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKEL 388 (493)
Q Consensus 314 ~~~~~~i~d~~~~~~~~~g~~Gel~v~~-----~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~ 388 (493)
++++++|+| ++++++++|+.|||+++| +.+++||+++++.+.+.|. +|||+|||+|++++||++++.||.||+
T Consensus 400 ~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~-~gwy~TGDlg~~d~dG~l~~~GR~dd~ 477 (580)
T 3etc_A 400 PGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWH-DGYYHTGDMAWMDEDGYLWFVGRADDI 477 (580)
T ss_dssp TTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEESSSC
T ss_pred CCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcC-CCEEecCcEEEECCCCcEEEEecCCCE
Confidence 999999999 669999999999999997 7899999999999999994 899999999999999999999999999
Q ss_pred EEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCC---HHHHHHHHHhcCCCCCCcceEEEe
Q 011116 389 IKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNIT---EAEIMDFIAKQVAPYKKIRRVAFI 465 (493)
Q Consensus 389 i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~~~~~ 465 (493)
||++|++|+|.+||++|.++|+|.+++|++.+++..++.+.+++++.++...+ .++|+++++++|++|++|+.++++
T Consensus 478 Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v 557 (580)
T 3etc_A 478 IKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFV 557 (580)
T ss_dssp EEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEE
T ss_pred EEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEe
Confidence 99999999999999999999999999999999998999999999998875544 368999999999999999999999
Q ss_pred ccccCCCCCccchHHHHHHHhhC
Q 011116 466 NSIPKSTAGKILRRELVTHAISG 488 (493)
Q Consensus 466 ~~lP~t~~GK~~r~~l~~~~~~~ 488 (493)
++||+|++||++|+.||+++.++
T Consensus 558 ~~lP~t~sGKi~R~~Lr~~~~~q 580 (580)
T 3etc_A 558 PELPKTISGKIRRVEIRDKDQSQ 580 (580)
T ss_dssp CC---------------------
T ss_pred CCCCCCCCcCCcHHHHHhHhhcC
Confidence 99999999999999999987653
No 10
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=5.3e-73 Score=575.98 Aligned_cols=448 Identities=24% Similarity=0.356 Sum_probs=382.1
Q ss_pred HHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEE--cCCCcccC-C
Q 011116 19 LSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFA--TSHTSYKL-P 95 (493)
Q Consensus 19 lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~--~~~~~~~~-~ 95 (493)
+|++| .+.|+++||+|+++++ |+++++++++||+++|++++|+++.++.+++.+++++++++++++ +.+....+ .
T Consensus 42 ~A~~L-~~~Gv~~gd~V~i~~~-~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~ 119 (504)
T 1t5h_X 42 VAARL-HADGLRPQQRVAVVAP-NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ 119 (504)
T ss_dssp HHHHH-HHTTCCTTCEEEEECC-SCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHH
T ss_pred HHHHH-HHcCCCCCCEEEEEcC-CCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhh
Confidence 49999 7789999999999999 999999999999999999999999999999999999999999999 65433322 1
Q ss_pred C--CCcEEEecCchhhhhhccCcccc-cccCCCCCCCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCC
Q 011116 96 S--NLRTILMDSPEFISLLNQNEDVA-DFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDP 172 (493)
Q Consensus 96 ~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~ 172 (493)
. ..+++. +.++........ ..........++++++++|||||||.||+|.++|+++...+......+..
T Consensus 120 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~--- 191 (504)
T 1t5h_X 120 SGSGARIIF-----LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGL--- 191 (504)
T ss_dssp HCCCCEEEE-----GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCC---
T ss_pred ccccceeEE-----ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCC---
Confidence 1 222222 222322210000 00111134567899999999999999999999999998887776655422
Q ss_pred CCCCCCCcEEEEecChhHHHHH-HHHHHHHhcCCeEEEecCCCHHHHHHHHHhcCeeecccChHHHHHHHhcccC--CCC
Q 011116 173 NEGPPPHPVSFFTLPMFHVFGF-FMLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLT--DKY 249 (493)
Q Consensus 173 ~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~--~~~ 249 (493)
...+.+++++.+|++|..++ ..++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.... ...
T Consensus 192 --~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 269 (504)
T 1t5h_X 192 --RHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSL 269 (504)
T ss_dssp --CSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCC
T ss_pred --CCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccc
Confidence 11678999999999999998 6788999999999999889999999999999999999999999999886522 345
Q ss_pred CCCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCccccccCCCCCCCCCccccccCCceEEEEcCCCC---
Q 011116 250 DLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIVDPATG--- 326 (493)
Q Consensus 250 ~l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~--- 326 (493)
.++++|.+++|||++++++.+++++.| ++.+++.||+||++..... . ....++.|.|.++++++++|. ++
T Consensus 270 ~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~--~---~~~~~~~g~p~~~~~~~i~~~-~~~~~ 342 (504)
T 1t5h_X 270 KLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAMNSLYM--R---QPKTGTEMAPGFFSEVRIVRI-GGGVD 342 (504)
T ss_dssp CCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEEETTTEEEEEE--E---SCSSSSEEBCCTTCCEEEECT-TSCTT
T ss_pred cCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeeccccccccccc--c---CCCCCccccCCCCCceeEEec-cCCCC
Confidence 688999999999999999999999999 7899999999999322221 1 235578999999999999994 45
Q ss_pred ccCCCCCceEEEEe-CccccccccCCcccccccccCCCeeeccceEEEcCCCcEEEEcccCCeEEeCceeeChHHHHHHH
Q 011116 327 EALPPGQKGELWLR-GPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLL 405 (493)
Q Consensus 327 ~~~~~g~~Gel~v~-~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l 405 (493)
++++.|+.|||+++ |+.++.||+++++.+.+.| .+|||+|||+|++++||.+++.||.||+||++|++|+|.+||++|
T Consensus 343 ~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l 421 (504)
T 1t5h_X 343 EIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVL 421 (504)
T ss_dssp CBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHH
T ss_pred CcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHH
Confidence 89999999999999 9999999999999999988 589999999999999999999999999999999999999999999
Q ss_pred hcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCCHHHHHHHHHh-cCCCCCCcceEEEeccccCCCCCccchHHHHHH
Q 011116 406 HSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAK-QVAPYKKIRRVAFINSIPKSTAGKILRRELVTH 484 (493)
Q Consensus 406 ~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~ 484 (493)
.++|+|.+++|++.+++..++.++++|++.++...+.+++++++++ +|+.|++|+.++++++||+|++||++|+.|+++
T Consensus 422 ~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 501 (504)
T 1t5h_X 422 GTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQ 501 (504)
T ss_dssp TTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHH
T ss_pred HhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHH
Confidence 9999999999999999888999999999988777889999999998 999999999999999999999999999999998
Q ss_pred Hh
Q 011116 485 AI 486 (493)
Q Consensus 485 ~~ 486 (493)
+.
T Consensus 502 ~~ 503 (504)
T 1t5h_X 502 VS 503 (504)
T ss_dssp HC
T ss_pred hc
Confidence 75
No 11
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=2.9e-73 Score=579.31 Aligned_cols=462 Identities=20% Similarity=0.282 Sum_probs=391.8
Q ss_pred cchhhhHHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCcc
Q 011116 13 SSARFTLSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSY 92 (493)
Q Consensus 13 ~~~~~~lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~ 92 (493)
+++++ |++| .+.|+++||+|+++++ |++++++++|||+++|++++|+++.++.+++.++++.+++++++++.....
T Consensus 35 ~~~~l--A~~L-~~~g~~~gd~V~i~~~-n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~ 110 (512)
T 3fce_A 35 DSDAL--AHWI-SSEYPDDRSPIMVYGH-MQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTV 110 (512)
T ss_dssp HHHHH--HHHH-HHHSTTCCCCEEEEES-SCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCS
T ss_pred HHHHH--HHHH-HHhCCCCCCEEEEEeC-CCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccc
Confidence 34444 9999 7789999999999999 999999999999999999999999999999999999999999999854322
Q ss_pred cCCCCCcEEEecCchhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCC
Q 011116 93 KLPSNLRTILMDSPEFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDP 172 (493)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~ 172 (493)
. ......+....+......... ..........++++++++|||||||.||+|.++|.++...+......+.
T Consensus 111 ~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~---- 181 (512)
T 3fce_A 111 T---DLPVRIVSEDNLKDIFFTHKG--NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFN---- 181 (512)
T ss_dssp S---CCSSEEEETHHHHHHHHHTTT--CCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTT----
T ss_pred c---ccccceechhhhhhhcccccc--cCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcC----
Confidence 1 111122222333332221110 1112233566899999999999999999999999999998888777763
Q ss_pred CCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEEEecC---CCHHHHHHHHHhcCeeecccChHHHHHHHhcccCCCC
Q 011116 173 NEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFMER---FDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKY 249 (493)
Q Consensus 173 ~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~~~~~---~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~ 249 (493)
+.++|++++.+|++|..++..++.++..|+++++.+. .++..+++.++++++|++.++|+++..++........
T Consensus 182 ---~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 258 (512)
T 3fce_A 182 ---LQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSES 258 (512)
T ss_dssp ---CCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTT
T ss_pred ---CCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccch
Confidence 4899999999999999999889999999999999875 6899999999999999999999999999887766677
Q ss_pred CCCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCccccccCCC---CCCCCCccccccCCceEEEEcCCCC
Q 011116 250 DLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPD---EAERHGSVGRLAELMEAKIVDPATG 326 (493)
Q Consensus 250 ~l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~---~~~~~~~~g~p~~~~~~~i~d~~~~ 326 (493)
.++++|.+++|||++++++.+++.+.|+++++++.||+||++..++...... ......++|+|.++++++|+| +++
T Consensus 259 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g 337 (512)
T 3fce_A 259 MLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDG 337 (512)
T ss_dssp TSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSS
T ss_pred hCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCC
Confidence 7899999999999999999999999999999999999999988765432221 122456799999999999999 789
Q ss_pred ccCCCCCceEEEEeCccccccccCCcccccccc---cCCCeeeccceEEEcCCCcEEEEcccCCeEEeCceeeChHHHHH
Q 011116 327 EALPPGQKGELWLRGPTIMKGYVGDDKATSETV---HSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEH 403 (493)
Q Consensus 327 ~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~ 403 (493)
+++++|+.|||+++||.++.||+++++.+.+.| +.++||+|||+|++ +||++++.||.||+||++|++|+|.+||+
T Consensus 338 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~ 416 (512)
T 3fce_A 338 TIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEH 416 (512)
T ss_dssp CBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHH
T ss_pred CCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHH
Confidence 999999999999999999999999999999887 34679999999999 89999999999999999999999999999
Q ss_pred HHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCCH----HHHHHHHHhcCCCCCCcceEEEeccccCCCCCccchH
Q 011116 404 LLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITE----AEIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRR 479 (493)
Q Consensus 404 ~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~ 479 (493)
+|.++|+|.+++|++.+++..++.+++++++.++...+. ++++++++++|+.|++|+.++++++||+|++||++|+
T Consensus 417 ~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~ 496 (512)
T 3fce_A 417 HLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRK 496 (512)
T ss_dssp HHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHH
T ss_pred HHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHH
Confidence 999999999999999998888889999999877654443 5789999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCC
Q 011116 480 ELVTHAISGNLSK 492 (493)
Q Consensus 480 ~l~~~~~~~~~~~ 492 (493)
.|++.+.+++.++
T Consensus 497 ~L~~~~~~~~~~~ 509 (512)
T 3fce_A 497 KLLSEVTALEHHH 509 (512)
T ss_dssp HHHHHHHC-----
T ss_pred HHHhhhhhccccc
Confidence 9999999987653
No 12
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=3.3e-72 Score=571.10 Aligned_cols=457 Identities=22% Similarity=0.282 Sum_probs=393.8
Q ss_pred chhhhHHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCccc
Q 011116 14 SARFTLSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSYK 93 (493)
Q Consensus 14 ~~~~~lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~~ 93 (493)
++++ |++|+++.|.++||+|+++++ |++++++++|||+++|++++|+++.++.+++.++++.++++++|++......
T Consensus 36 ~~~~--A~~L~~~~~~~~g~~V~i~~~-n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~ 112 (511)
T 3e7w_A 36 SDRA--AAAIQKRISGEKKSPILVYGH-MEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID 112 (511)
T ss_dssp HHHH--HHHHTTTSCSSSCCCEEEEES-SCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT
T ss_pred HHHH--HHHHHHhcCCCCCCeEEEEec-CCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch
Confidence 4444 999944468999999999999 9999999999999999999999999999999999999999999997654322
Q ss_pred -CCCCCcEEEecCchhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCC
Q 011116 94 -LPSNLRTILMDSPEFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDP 172 (493)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~ 172 (493)
+......+. +.++..... ..........++++++++|||||||.||+|.++|.++...+......+.
T Consensus 113 ~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~---- 180 (511)
T 3e7w_A 113 AVGQQIQTVS-----AEELLENEG---GSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFP---- 180 (511)
T ss_dssp CCCCSSCEEE-----HHHHHTSCS---CCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHST----
T ss_pred hcccccceec-----Hhhhhcccc---CCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcC----
Confidence 222222222 223332221 1112223456789999999999999999999999999998888777764
Q ss_pred CCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEEEecC---CCHHHHHHHHHhcCeeecccChHHHHHHHhcccCCCC
Q 011116 173 NEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFMER---FDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKY 249 (493)
Q Consensus 173 ~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~~~~~---~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~ 249 (493)
+.+++++++.+|++|..++..++.++..|+++++.+. .++..+++.++++++|++.++|+++..++........
T Consensus 181 ---~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 257 (511)
T 3e7w_A 181 ---VSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQD 257 (511)
T ss_dssp ---TTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTT
T ss_pred ---CCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccc
Confidence 4889999999999999999889999999999999865 6899999999999999999999999999988766677
Q ss_pred CCCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCccccccCCC---CCCCCCccccccCCceEEEEcCCCC
Q 011116 250 DLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPD---EAERHGSVGRLAELMEAKIVDPATG 326 (493)
Q Consensus 250 ~l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~---~~~~~~~~g~p~~~~~~~i~d~~~~ 326 (493)
.++++|.+++|||++++++.+++.+.||++++++.||+||++..++...... ......++|+|.++++++|+| +++
T Consensus 258 ~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g 336 (511)
T 3e7w_A 258 LLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEG 336 (511)
T ss_dssp TCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTS
T ss_pred cCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCC
Confidence 7899999999999999999999999999999999999999988766432211 123456799999999999999 669
Q ss_pred ccCCCCCceEEEEeCccccccccCCcccccccccC-CC--eeeccceEEEcCCCcEEEEcccCCeEEeCceeeChHHHHH
Q 011116 327 EALPPGQKGELWLRGPTIMKGYVGDDKATSETVHS-EG--WLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEH 403 (493)
Q Consensus 327 ~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-~~--~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~ 403 (493)
++++.|+.|||+++|+.++.||+++++.+.+.|.. +| ||+|||+|++ +||++++.||.||+||++|++|+|.+||+
T Consensus 337 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~ 415 (511)
T 3e7w_A 337 QPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEF 415 (511)
T ss_dssp CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHH
T ss_pred CCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHH
Confidence 99999999999999999999999999999988832 23 7999999999 69999999999999999999999999999
Q ss_pred HHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCCH----HHHHHHHHhcCCCCCCcceEEEeccccCCCCCccchH
Q 011116 404 LLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITE----AEIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRR 479 (493)
Q Consensus 404 ~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~ 479 (493)
+|.++|+|.+++|++.+++..++.+++++++.++..... ++++++++++|+.|++|+.++++++||+|++||++|+
T Consensus 416 ~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~ 495 (511)
T 3e7w_A 416 HVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRK 495 (511)
T ss_dssp HHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHH
T ss_pred HHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHH
Confidence 999999999999999998888899999999887655443 6789999999999999999999999999999999999
Q ss_pred HHHHHHhhCCC
Q 011116 480 ELVTHAISGNL 490 (493)
Q Consensus 480 ~l~~~~~~~~~ 490 (493)
+|++.+.+.+-
T Consensus 496 ~L~~~~~~~~~ 506 (511)
T 3e7w_A 496 RIGEEVLVRSH 506 (511)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHhHHhhhcc
Confidence 99999988654
No 13
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=3.8e-74 Score=589.21 Aligned_cols=459 Identities=20% Similarity=0.302 Sum_probs=299.7
Q ss_pred chhhhHHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCccc
Q 011116 14 SARFTLSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSYK 93 (493)
Q Consensus 14 ~~~~~lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~~ 93 (493)
++++ |++| .+.|+++||+|+++++ |+++++++++||+++|++++|+++.++.+++.++++.+++++++++......
T Consensus 65 ~~~l--A~~L-~~~Gv~~gd~V~i~~~-n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~ 140 (544)
T 3o83_A 65 STNL--ATRL-AEKGLGKGDTALVQLP-NVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVF 140 (544)
T ss_dssp HHHH--HHHH-HHTTCCTTCEEEECCC-SSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGG
T ss_pred HHHH--HHHH-HHCCCCCCCEEEEECC-CCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccc
Confidence 4555 9999 7789999999999999 9999999999999999999999999999999999999999999999765311
Q ss_pred C--------C---CCCc-EEEecCc----hhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHHH
Q 011116 94 L--------P---SNLR-TILMDSP----EFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVI 157 (493)
Q Consensus 94 ~--------~---~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~ 157 (493)
. . .... ++.++.. .+.++..... ..........++++++++|||||||.||+|.++|.++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~ 217 (544)
T 3o83_A 141 SNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPA---ETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYD 217 (544)
T ss_dssp SSSHHHHHHHHTTCCCSEEEEETCCTTSEEHHHHHHSCC---SSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHH
T ss_pred cHHHHHHHHhhcccCcceEEEecCCccccchhhhhhccc---ccccccccCCccceEEEEECCCcccCCceEEechHHHH
Confidence 0 0 1122 3333221 1222222221 11112234568999999999999999999999999999
Q ss_pred HHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHH--HHHHHHhcCCeEEEecCCCHHHHHHHHHhcCeeecccChH
Q 011116 158 AIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFF--MLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPP 235 (493)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~--~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~ 235 (493)
..+......+. +.+++++++.+|++|.+++. .++.++..|+++++.+..++..+++.++++++|++.++|+
T Consensus 218 ~~~~~~~~~~~-------~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~ 290 (544)
T 3o83_A 218 YSVRASAEICG-------LNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPS 290 (544)
T ss_dssp HHHHHHHHHTT-------CCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHH
T ss_pred HHHHHHHHHhC-------CCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechH
Confidence 99888877763 48999999999999999984 5889999999999998889999999999999999999999
Q ss_pred HHHHHHhcccCCCCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCccccccCCCCCCCCCcccccc-C
Q 011116 236 LIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLA-E 314 (493)
Q Consensus 236 ~~~~l~~~~~~~~~~l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~-~ 314 (493)
++..+++.......+++++|.+++||+++++++.+++.+.| ++++++.||+||++..... ..........++|+|+ +
T Consensus 291 ~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~-~~~~~~~~~~~~G~p~~~ 368 (544)
T 3o83_A 291 AVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAEGLVNYTR-LDDSDEQIFTTQGRPISS 368 (544)
T ss_dssp HHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEEEECTTSCEEECC-TTSCHHHHHHCCCEESCT
T ss_pred HHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEeeeccccccceeec-CCCchhhccCCCceecCC
Confidence 99999988766666788999999999999999999999999 8999999999998754432 1112222346789996 8
Q ss_pred CceEEEEcCCCCccCCCCCceEEEEeCccccccccCCcccccccccCCCeeeccceEEEcCCCcEEEEcccCCeEEeCce
Q 011116 315 LMEAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAY 394 (493)
Q Consensus 315 ~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~ 394 (493)
+.+++|+| ++++++++|+.|||+++|+.++.||+++++.+.+.|+.+|||+|||+|++++||.+++.||.||+||++|+
T Consensus 369 ~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~ 447 (544)
T 3o83_A 369 DDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGE 447 (544)
T ss_dssp TCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC--------
T ss_pred CcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCE
Confidence 99999999 88999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred eeChHHHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCCHHHHHHHHHh-cCCCCCCcceEEEeccccCCCC
Q 011116 395 QVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAK-QVAPYKKIRRVAFINSIPKSTA 473 (493)
Q Consensus 395 ~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~lP~t~~ 473 (493)
+|+|.+||++|.++|+|.+++|++.+++..++.+++++++.+ ...+.+++++++++ +|+.|++|+.++++++||+|++
T Consensus 448 ~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~ 526 (544)
T 3o83_A 448 KIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAV 526 (544)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-CCCCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCC
Confidence 999999999999999999999999999888999999998865 45667789999988 7999999999999999999999
Q ss_pred CccchHHHHHHHhhCCC
Q 011116 474 GKILRRELVTHAISGNL 490 (493)
Q Consensus 474 GK~~r~~l~~~~~~~~~ 490 (493)
||++|+.|++++.+...
T Consensus 527 GKi~r~~L~~~~~~~~~ 543 (544)
T 3o83_A 527 GKVDKKQLRSILNTSTT 543 (544)
T ss_dssp -----------------
T ss_pred CCCcHHHHHHHHhhccC
Confidence 99999999999887543
No 14
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=2.2e-72 Score=587.12 Aligned_cols=460 Identities=20% Similarity=0.294 Sum_probs=385.9
Q ss_pred chhhhHHHHHHh-hCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCcc
Q 011116 14 SARFTLSHALSK-RDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSY 92 (493)
Q Consensus 14 ~~~~~lA~~L~~-~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~ 92 (493)
++++ |++| + +.|+++||+|+++++ |++++++++|||+++|++++|+++.++.+++.+++++++++++|+++....
T Consensus 123 v~~l--A~~L-~~~~Gv~~Gd~V~i~~~-~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~ 198 (663)
T 1ry2_A 123 VCQV--AQVL-TYSMGVRKGDTVAVYMP-MVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNR 198 (663)
T ss_dssp HHHH--HHHH-HHTSCCCTTCEEEECCC-SSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCB
T ss_pred HHHH--HHHH-HHhcCCCCCCEEEEEcC-CCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEcccccc
Confidence 4444 9999 6 899999999999999 999999999999999999999999999999999999999999999876543
Q ss_pred c-------------CCC--CC-cEEEecCc-------------hhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCC
Q 011116 93 K-------------LPS--NL-RTILMDSP-------------EFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTT 143 (493)
Q Consensus 93 ~-------------~~~--~~-~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTT 143 (493)
. +.. .. .++.++.. .|.++..... .........++++++|+||||||
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~ilyTSGTT 274 (663)
T 1ry2_A 199 GGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYK----TYYPCTPVDSEDPLFLLYTSGST 274 (663)
T ss_dssp TTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTSC----SCCCCCCEETTSCCEEEEECCSS
T ss_pred CCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCccccHHHHHhhcC----CCCCccccCCCCceEEEeccCCC
Confidence 1 111 12 24444321 1333333211 11223345679999999999999
Q ss_pred CCccceecchHHHHHHHHHh-hhhcccCCCCCCCCCCcEEEEecChhHHHHH-HHHHHHHhcCCeEEEecC----CCHHH
Q 011116 144 GKVKGVLLSHLNVIAIIAGY-YHVTEETDPNEGPPPHPVSFFTLPMFHVFGF-FMLVRAASKGETLVFMER----FDFEK 217 (493)
Q Consensus 144 G~pK~v~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~ 217 (493)
|.||||+++|.++....... ...+ ++.++|++++..|++|+.+. +.++.++..|+++++.+. .++..
T Consensus 275 G~PKgV~~sh~~~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~ 347 (663)
T 1ry2_A 275 GAPKGVQHSTAGYLLGALLTMRYTF-------DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSR 347 (663)
T ss_dssp SSCEEEEECSHHHHHHHHHHHHHHS-------CCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTH
T ss_pred CCCceEEEchhHHHHHHHHHHHHhc-------CCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHH
Confidence 99999999999987766443 3333 34789999999999999998 778899999999999854 47899
Q ss_pred HHHHHHhcCeeecccChHHHHHHHhccc--CCCCCCCCeeEEEecCCCCCHHHHHHHHHhCC--CCceeccccccccCCc
Q 011116 218 MLKAVENYRVTYMPVSPPLIVAFINSKL--TDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFP--NVEIRQGYGLTETGGA 293 (493)
Q Consensus 218 ~~~~l~~~~~t~l~~~P~~~~~l~~~~~--~~~~~l~~lr~v~~~Ge~~~~~~~~~~~~~~~--~~~v~~~yG~tE~g~~ 293 (493)
+++.++++++|+++++|++++.|.+... ....+++++|.+++|||++++++++++.+.++ ++++++.||+||++..
T Consensus 348 ~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~ 427 (663)
T 1ry2_A 348 YWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSH 427 (663)
T ss_dssp HHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSC
T ss_pred HHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCe
Confidence 9999999999999999999999987654 23456899999999999999999999999983 2899999999999876
Q ss_pred cccccC-CCCCCCCCccccccCCceEEEEcCCCCccCCC-CCceEEEEeC--ccccccccCCcccccccccC--CCeeec
Q 011116 294 GSRVIG-PDEAERHGSVGRLAELMEAKIVDPATGEALPP-GQKGELWLRG--PTIMKGYVGDDKATSETVHS--EGWLKT 367 (493)
Q Consensus 294 ~~~~~~-~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~-g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~~--~~~~~T 367 (493)
++.... .......+++|+|+++++++|+|++++++++. |+.|||+++| |.+++||+++++.+.+.+.. +|||+|
T Consensus 428 ~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~T 507 (663)
T 1ry2_A 428 LVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFT 507 (663)
T ss_dssp SEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEE
T ss_pred eeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEc
Confidence 654322 12234668899999999999999658999988 9999999999 58999999999988877643 789999
Q ss_pred cceEEEcCCCcEEEEcccCCeEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCC---C-C--
Q 011116 368 GDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSN---I-T-- 441 (493)
Q Consensus 368 gD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---~-~-- 441 (493)
||+|++++||++++.||+||+||++|.+|++.+||++|.++|+|.+++|++.+++..++.++++|++.++.. . +
T Consensus 508 GDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~ 587 (663)
T 1ry2_A 508 GDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDE 587 (663)
T ss_dssp EEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------
T ss_pred CCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchh
Confidence 999999999999999999999999999999999999999999999999999998888899999999877643 2 2
Q ss_pred ----HHHHHHHHHhcCCCCCCcceEEEeccccCCCCCccchHHHHHHHhhC
Q 011116 442 ----EAEIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRRELVTHAISG 488 (493)
Q Consensus 442 ----~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~~~ 488 (493)
.++|+++++++|++|++|+.|+++++||+|++||++|+.|++++..+
T Consensus 588 ~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 588 LQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence 57899999999999999999999999999999999999999988765
No 15
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=5.3e-73 Score=580.41 Aligned_cols=450 Identities=26% Similarity=0.401 Sum_probs=348.0
Q ss_pred HHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCcccCCC--
Q 011116 19 LSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSYKLPS-- 96 (493)
Q Consensus 19 lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~-- 96 (493)
+|++| .+.|+++||+|+++++ |++++++++|||+++|++++|+++.++.+++.++++.++++++|++++....+..
T Consensus 60 lA~~L-~~~Gv~~gd~V~i~~~-n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~ 137 (541)
T 1v25_A 60 LMGGL-RALGVGVGDRVATLGF-NHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR 137 (541)
T ss_dssp HHHHH-HHTTCCTTCEEEEECC-SSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG
T ss_pred HHHHH-HHcCCCCCCEEEEEcC-CcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHH
Confidence 49999 7899999999999999 9999999999999999999999999999999999999999999999765443221
Q ss_pred ----CC-cEEEecCc------hhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhh-
Q 011116 97 ----NL-RTILMDSP------EFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYY- 164 (493)
Q Consensus 97 ----~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~- 164 (493)
.. .++.++.. .+.++..... . .....++++++++|||||||.||+|.++|+++........
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~ 210 (541)
T 1v25_A 138 GELKTVQHFVVMDEKAPEGYLAYEEALGEEA-----D--PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASL 210 (541)
T ss_dssp GGCSSCCEEEESSSCCCTTCEEHHHHCCSCC-----C--CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTS
T ss_pred hhCCCccEEEEecCCCCcccccHHHHhhccC-----C--cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhh
Confidence 12 23444332 2333332221 0 1344678999999999999999999999999987665422
Q ss_pred -hhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEEEecC-CCHHHHHHHHHhcCeeecccChHHHHHHHh
Q 011116 165 -HVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFMER-FDFEKMLKAVENYRVTYMPVSPPLIVAFIN 242 (493)
Q Consensus 165 -~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~ 242 (493)
..+ ++.++|++++.+|++|..++..++.++..|+++++.+. +++..+++.++++++|++.++|+++..|++
T Consensus 211 ~~~~-------~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 283 (541)
T 1v25_A 211 VDGT-------ALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALAD 283 (541)
T ss_dssp TTTT-------CCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHH
T ss_pred cccc-------cCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHh
Confidence 222 45789999999999999998778889999999999864 699999999999999999999999999988
Q ss_pred cccCCCCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCccccccCCCC---------CCCCCcccccc
Q 011116 243 SKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDE---------AERHGSVGRLA 313 (493)
Q Consensus 243 ~~~~~~~~l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~---------~~~~~~~g~p~ 313 (493)
.......+++++|.+++|||++++++.+++ +.+ ++++++.||+||++.+++....... .....++|+|+
T Consensus 284 ~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~ 361 (541)
T 1v25_A 284 YLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPI 361 (541)
T ss_dssp HHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEEC
T ss_pred hhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCceeecccccccccceecccccccccccCccccccccCCCCCcC
Confidence 765555668899999999999999999999 667 8999999999999876654322110 02346899999
Q ss_pred CCceEEEEcCCCCccCCC--CCceEEEEeCccccccccCCcccccccccCCCeeeccceEEEcCCCcEEEEcccCCeEEe
Q 011116 314 ELMEAKIVDPATGEALPP--GQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKY 391 (493)
Q Consensus 314 ~~~~~~i~d~~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~ 391 (493)
++++++|+| +++++++. ++.|||+++||.++.||+++++.+.+.|..+|||+|||+|++++||++++.||.||+||+
T Consensus 362 ~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~ 440 (541)
T 1v25_A 362 PLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKS 440 (541)
T ss_dssp TTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEE
T ss_pred CCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeee
Confidence 999999999 66888874 368999999999999999999999999987999999999999999999999999999999
Q ss_pred CceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCCHHHHHHHHHh-cCCCCCCcceEEEeccccC
Q 011116 392 KAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAK-QVAPYKKIRRVAFINSIPK 470 (493)
Q Consensus 392 ~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~lP~ 470 (493)
+|++|+|.+||++|.++|+|.+++|++.+++..++.+++++++. +...+.+++++++++ +|+.|++|+.++++++||+
T Consensus 441 ~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~ 519 (541)
T 1v25_A 441 GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPR 519 (541)
T ss_dssp TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC--------------------CCCTTTSCSBC--------
T ss_pred CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-CCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCC
Confidence 99999999999999999999999999999998899999999876 445667889999998 8999999999999999999
Q ss_pred CCCCccchHHHHHHHhhC
Q 011116 471 STAGKILRRELVTHAISG 488 (493)
Q Consensus 471 t~~GK~~r~~l~~~~~~~ 488 (493)
|++||++|+.|++++.+.
T Consensus 520 t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 520 TSAGKFLKRALREQYKNY 537 (541)
T ss_dssp ------CCTTHHHHSTTS
T ss_pred CCccCeeHHHHHHHHHHh
Confidence 999999999999987653
No 16
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=3e-72 Score=573.29 Aligned_cols=461 Identities=21% Similarity=0.291 Sum_probs=380.9
Q ss_pred chhhhHHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCccc
Q 011116 14 SARFTLSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSYK 93 (493)
Q Consensus 14 ~~~~~lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~~ 93 (493)
++++ |++| .+.|+++||+|+++++ |+++++++++||+++|++++|+++.++.+++.++++.+++++++++++....
T Consensus 39 ~~~l--A~~L-~~~g~~~gd~V~i~~~-n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~ 114 (521)
T 3l8c_A 39 SDSI--AAFI-DSLALLAKSPVLVFGA-QTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLT 114 (521)
T ss_dssp HHHH--HHHH-HHTCCCTTCCEEEEEC-SSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSC
T ss_pred HHHH--HHHH-HHcCCCCCCEEEEEeC-CCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccc
Confidence 4444 9999 8899999999999999 9999999999999999999999999999999999999999999999876544
Q ss_pred CCCCCcEEEecCchhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCC
Q 011116 94 LPSNLRTILMDSPEFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPN 173 (493)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~ 173 (493)
+. ....+.+.. ........ .+........++++++++|||||||.||+|.++|+++.............
T Consensus 115 ~~-~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~---- 183 (521)
T 3l8c_A 115 IE-GISLVSLSE--IESAKLAE----MPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAF---- 183 (521)
T ss_dssp CT-TSEEEEHHH--HHHHHHHT----CCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTT----
T ss_pred cc-cCcccchhh--hhhccccc----CCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcccc----
Confidence 43 222332221 11111111 11223345678999999999999999999999999999877765554222
Q ss_pred CCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEEEecCC---CHHHHHHHHHhcCeeecccChHHHHHHHhcccCCCCC
Q 011116 174 EGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFMERF---DFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYD 250 (493)
Q Consensus 174 ~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~---~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~ 250 (493)
+..+.++++...|++|..+...++.++..|+++++.+.. ++..+++.+.++++|++.++|+++..+..........
T Consensus 184 -~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 262 (521)
T 3l8c_A 184 -DVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAK 262 (521)
T ss_dssp -CCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTT
T ss_pred -CCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcccccc
Confidence 457889999999999999988889999999999998653 8999999999999999999999999998877666677
Q ss_pred CCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCccccccCCC---CCCCCCccccccCCceEEEEcCCCCc
Q 011116 251 LSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPD---EAERHGSVGRLAELMEAKIVDPATGE 327 (493)
Q Consensus 251 l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~---~~~~~~~~g~p~~~~~~~i~d~~~~~ 327 (493)
++++|.+++||+++++++.+++.+.|+++++++.||+||++..++...... ......++|+|.++++++|+| ++++
T Consensus 263 ~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~ 341 (521)
T 3l8c_A 263 MPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGK 341 (521)
T ss_dssp CTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSC
T ss_pred CccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcC
Confidence 899999999999999999999999998999999999999987665432211 122456799999999999999 6799
Q ss_pred cCCCCCceEEEEeCccccccccCCcccccccc---cCCCeeeccceEEEcCCCcEEEEcccCCeEEeCceeeChHHHHHH
Q 011116 328 ALPPGQKGELWLRGPTIMKGYVGDDKATSETV---HSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHL 404 (493)
Q Consensus 328 ~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~ 404 (493)
+++.|+.|||+++||.++.||+++++.+.+.| +.++||+|||+|++++||++++.||.||+||++|++|+|.+||++
T Consensus 342 ~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~ 421 (521)
T 3l8c_A 342 ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQ 421 (521)
T ss_dssp BCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHH
T ss_pred CCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHH
Confidence 99999999999999999999999999999887 456899999999999999999999999999999999999999999
Q ss_pred HhcCCCcceEEEEeeeCC-CCCeeEEEEEEeCCCCCCC-------HHHHHHHHHhcCCCCCCcceEEEeccccCCCCCcc
Q 011116 405 LHSNPEIADAAVIPYPDE-EAGQIPMAFVVRKPGSNIT-------EAEIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKI 476 (493)
Q Consensus 405 l~~~~~v~~~~v~~~~~~-~~~~~~~~~v~~~~~~~~~-------~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~ 476 (493)
|.++|+|.++++++..++ ..++.+++++++.++...+ .++++++++++|+.|++|+.++++++||+|++||+
T Consensus 422 l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi 501 (521)
T 3l8c_A 422 LNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKI 501 (521)
T ss_dssp HHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSB
T ss_pred HHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCc
Confidence 999999999999988654 3457889999988764321 46799999999999999999999999999999999
Q ss_pred chHHHHHHHhhCCCC
Q 011116 477 LRRELVTHAISGNLS 491 (493)
Q Consensus 477 ~r~~l~~~~~~~~~~ 491 (493)
+|+.|++++.++..+
T Consensus 502 dr~~L~~~~~~~~~~ 516 (521)
T 3l8c_A 502 DIKTLINEVNNREGH 516 (521)
T ss_dssp CHHHHHHHTC-----
T ss_pred cHHHHhhhhhcCCcc
Confidence 999999999876543
No 17
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.9e-71 Score=571.40 Aligned_cols=448 Identities=23% Similarity=0.353 Sum_probs=383.1
Q ss_pred HHHHHHhhC-CCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCcccCCC-
Q 011116 19 LSHALSKRD-SLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSYKLPS- 96 (493)
Q Consensus 19 lA~~L~~~~-gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~- 96 (493)
+|++| .+. |+++||+|+++++ |++++++++|||+++|++++|+++.++.+++.++++.++++++|++++....+.+
T Consensus 86 lA~~L-~~~~Gv~~gd~V~i~~~-n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 163 (570)
T 3c5e_A 86 AANVL-SGACGLQRGDRVAVVLP-RVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTV 163 (570)
T ss_dssp HHHHH-HTTTCCCTTCEEEEECC-SCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHH
T ss_pred HHHHH-HHccCCCCCCEEEEEcC-CCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHH
Confidence 59999 666 9999999999999 9999999999999999999999999999999999999999999999876543321
Q ss_pred -----CC-cEEEecC------chhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHHHH--HHHH
Q 011116 97 -----NL-RTILMDS------PEFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIA--IIAG 162 (493)
Q Consensus 97 -----~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~--~~~~ 162 (493)
.. .++.++. ..+.+++.... . ........++++++|+|||||||.||+|.++|. ++. ....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~ 238 (570)
T 3c5e_A 164 ASECPSLRIKLLVSEKSCDGWLNFKKLLNEAS---T-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMD 238 (570)
T ss_dssp GGGCTTCCEEEEESSSCCTTSEEHHHHHHHSC---S-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHH
T ss_pred hhcCCceeEEEEecccCccccccHHHHhhccc---c-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhh
Confidence 22 2344433 12333333221 1 112234567899999999999999999999999 544 3322
Q ss_pred hhhhcccCCCCCCCCCCcEEEEecChhHHHHHH-HHHHHHhcCCeEEEec--CCCHHHHHHHHHhcCeeecccChHHHHH
Q 011116 163 YYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFF-MLVRAASKGETLVFME--RFDFEKMLKAVENYRVTYMPVSPPLIVA 239 (493)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~-~~~~~l~~G~~~~~~~--~~~~~~~~~~l~~~~~t~l~~~P~~~~~ 239 (493)
. ..+ ++.++|++++..|++|..++. .++.++..|+++++.. .+++..+++.++++++|++.++|+++..
T Consensus 239 ~-~~~-------~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 310 (570)
T 3c5e_A 239 A-GWT-------GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRM 310 (570)
T ss_dssp T-TTT-------SCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHH
T ss_pred h-hhc-------CCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHH
Confidence 2 333 458899999999999999985 6888999999999985 6799999999999999999999999999
Q ss_pred HHhcccCCCCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCccccccCCCCCCCCCccccccCCceEE
Q 011116 240 FINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAK 319 (493)
Q Consensus 240 l~~~~~~~~~~l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~ 319 (493)
|++.. ....+++++|.+++|||++++++.+++.+.+ ++++++.||+||++..++.. .......+++|+|+++++++
T Consensus 311 l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~--~~~~~~~~~vG~p~~~~~v~ 386 (570)
T 3c5e_A 311 LLQQD-LSSYKFPHLQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVS--KTMKIKPGYMGTAASCYDVQ 386 (570)
T ss_dssp HHTSC-TTTCCCTTCCEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECC--TTSCCCTTCCCEECTTCCEE
T ss_pred HHhcc-ccccccccceEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecC--cccccCCCcccccCCCceEE
Confidence 98763 3344578999999999999999999999988 89999999999998654432 22234567899999999999
Q ss_pred EEcCCCCccCCCCCceEEEEe-----CccccccccCCcccccccccCCCeeeccceEEEcCCCcEEEEcccCCeEEeCce
Q 011116 320 IVDPATGEALPPGQKGELWLR-----GPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAY 394 (493)
Q Consensus 320 i~d~~~~~~~~~g~~Gel~v~-----~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~ 394 (493)
|+| +++++++.|+.|||+++ |+.++.||+++++.+.+.|. ++||+|||++++++||++++.||.||+||++|+
T Consensus 387 i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~-~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~ 464 (570)
T 3c5e_A 387 IID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR-GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGY 464 (570)
T ss_dssp EEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEE-TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTE
T ss_pred EEC-CCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhc-CCccccceeEEEcCCceEEEEecCCCEEEECCE
Confidence 999 67999999999999999 99999999999999999884 899999999999999999999999999999999
Q ss_pred eeChHHHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCC--CC---CHHHHHHHHHhcCCCCCCcceEEEecccc
Q 011116 395 QVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGS--NI---TEAEIMDFIAKQVAPYKKIRRVAFINSIP 469 (493)
Q Consensus 395 ~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--~~---~~~~l~~~l~~~l~~~~~p~~~~~~~~lP 469 (493)
+|+|.+||++|.++|+|.+++|++.+++..++.++++|++.++. .. ..++++++++++|+.|++|+.|+++++||
T Consensus 465 ~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP 544 (570)
T 3c5e_A 465 RIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLP 544 (570)
T ss_dssp EECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCC
T ss_pred EECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCC
Confidence 99999999999999999999999999988889999999987653 11 24789999999999999999999999999
Q ss_pred CCCCCccchHHHHHHHhh
Q 011116 470 KSTAGKILRRELVTHAIS 487 (493)
Q Consensus 470 ~t~~GK~~r~~l~~~~~~ 487 (493)
+|++||++|+.|++.+.+
T Consensus 545 ~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 545 KTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp BCTTCCBCHHHHHHHHTC
T ss_pred CCCCcCCcHHHHHHHHHh
Confidence 999999999999998854
No 18
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=4.4e-71 Score=574.71 Aligned_cols=455 Identities=21% Similarity=0.322 Sum_probs=392.0
Q ss_pred cchhhhHHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCcc
Q 011116 13 SSARFTLSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSY 92 (493)
Q Consensus 13 ~~~~~~lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~ 92 (493)
+++++ |++| .+.|+++||+|+++++ |++++++++|||+++|++++|+++.++.+++.++++.+++++++++.....
T Consensus 59 ~a~~l--A~~L-~~~Gv~~gd~V~l~~~-~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~ 134 (617)
T 3rg2_A 59 AADNL--ACSL-RRQGIKPGETALVQLG-NVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHAL 134 (617)
T ss_dssp HHHHH--HHHH-HHTTCCTTCEEEEECC-SSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGG
T ss_pred HHHHH--HHHH-HHcCCCCCCEEEEECC-CcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccc
Confidence 35555 9999 7789999999999999 999999999999999999999999999999999999999999999976542
Q ss_pred cCC-----------CCCcEEE-ecCch---hhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHHH
Q 011116 93 KLP-----------SNLRTIL-MDSPE---FISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVI 157 (493)
Q Consensus 93 ~~~-----------~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~ 157 (493)
... .....+. ++... +........ .........++++++++|||||||.||+|.++|+++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~ 210 (617)
T 3rg2_A 135 FSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPA----EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYY 210 (617)
T ss_dssp GSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHHHHHSCC----SSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHH
T ss_pred cccHHHHHHHhhcCCccceeeecccccccchhhhhcccc----cccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHH
Confidence 111 1222222 22221 222222221 1222334567899999999999999999999999999
Q ss_pred HHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHH--HHHHHHhcCCeEEEecCCCHHHHHHHHHhcCeeecccChH
Q 011116 158 AIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFF--MLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPP 235 (493)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~--~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~ 235 (493)
+.+......+. +.+++++++.+|++|.+++. .++.++..|+++++.+..++..+++.++++++|++.++|+
T Consensus 211 ~~~~~~~~~~~-------~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~ 283 (617)
T 3rg2_A 211 YSVRRSVEICQ-------FTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPP 283 (617)
T ss_dssp HHHHHHHHHHT-------CCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHH
T ss_pred HHHHHHHHhcC-------CCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchH
Confidence 98888877774 48999999999999999884 6899999999999998889999999999999999999999
Q ss_pred HHHHHHhcccCC--CCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCccccccCCCCCCCCCcccccc
Q 011116 236 LIVAFINSKLTD--KYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLA 313 (493)
Q Consensus 236 ~~~~l~~~~~~~--~~~l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~ 313 (493)
++..+++..... ...++++|.+++|||++++++.+++.+.+ ++++++.||+||++...... .........+.|+|+
T Consensus 284 ~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~-~~~~~~~~~~~G~p~ 361 (617)
T 3rg2_A 284 AVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQVFGMAEGLVNYTRL-DDSAEKIIHTQGYPM 361 (617)
T ss_dssp HHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEEEEETTEEEEECCT-TSCHHHHHHCCCEES
T ss_pred HHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEEeccCcceeecccC-CCcccccccCCCccC
Confidence 999998865433 33688999999999999999999999999 89999999999987544331 111122335688997
Q ss_pred -CCceEEEEcCCCCccCCCCCceEEEEeCccccccccCCcccccccccCCCeeeccceEEEcCCCcEEEEcccCCeEEeC
Q 011116 314 -ELMEAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYK 392 (493)
Q Consensus 314 -~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~ 392 (493)
++.+++|+| +++++++.|+.|||+++|+.+++||+++++.+.+.|..++||+|||++++++||.+++.||.||+||++
T Consensus 362 ~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~ 440 (617)
T 3rg2_A 362 CPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRG 440 (617)
T ss_dssp CTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEET
T ss_pred CCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEEC
Confidence 788999999 789999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred ceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCCHHHHHHHHHh-cCCCCCCcceEEEeccccCC
Q 011116 393 AYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAK-QVAPYKKIRRVAFINSIPKS 471 (493)
Q Consensus 393 G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~~lP~t 471 (493)
|++|+|.+||++|.++|+|.+++|++..++..++.++++++..+ ..+..++++++++ +|+.|++|..++++++||+|
T Consensus 441 G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--~~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t 518 (617)
T 3rg2_A 441 GEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE--PLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLT 518 (617)
T ss_dssp TEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--CCCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBC
T ss_pred CEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--CCCHHHHHHHHHhCCCccccCCcEEEEecccCCC
Confidence 99999999999999999999999999998888899999999875 4678899999998 69999999999999999999
Q ss_pred CCCccchHHHHHHHhh
Q 011116 472 TAGKILRRELVTHAIS 487 (493)
Q Consensus 472 ~~GK~~r~~l~~~~~~ 487 (493)
++||++|+.|++.+.+
T Consensus 519 ~~GKidR~~L~~~~~~ 534 (617)
T 3rg2_A 519 AVGKVDKKQLRQWLAS 534 (617)
T ss_dssp TTSSBCHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHhc
Confidence 9999999999998754
No 19
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=5.1e-73 Score=577.09 Aligned_cols=454 Identities=28% Similarity=0.408 Sum_probs=292.2
Q ss_pred cchhhhHHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCcc
Q 011116 13 SSARFTLSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSY 92 (493)
Q Consensus 13 ~~~~~~lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~ 92 (493)
+++++ |++| .+.|+++||+|+++++ |++++++++|||+++|++++|+++.++.+++.++++.++++++|++.+...
T Consensus 40 ~~~~l--A~~L-~~~Gv~~gd~V~i~~~-~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 115 (509)
T 3ivr_A 40 RAERL--ASGL-LRDGVHTGDRVAILSQ-NCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRD 115 (509)
T ss_dssp HHHHH--HHHH-HHTTCCTTCEEEEECC-SCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHH
T ss_pred HHHHH--HHHH-HHcCCCCCCEEEEEcC-CCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhh
Confidence 35555 9999 7789999999999999 999999999999999999999999999999999999999999999987654
Q ss_pred cCC-------CCCcEEEecCc--hhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHHHHHHHHh
Q 011116 93 KLP-------SNLRTILMDSP--EFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGY 163 (493)
Q Consensus 93 ~~~-------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~ 163 (493)
.+. ....++.++.. .+..+..... ..........++++++++|||||||.||+|.++|+++...+...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~ 192 (509)
T 3ivr_A 116 IVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLAS---DTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSL 192 (509)
T ss_dssp HHHHHGGGCSSCCEEEESSCCCSSCEEGGGTCC---CSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHH
T ss_pred hHHhhhcccCCceEEEEcCCCCcChhhHhhccC---CCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHH
Confidence 311 11223333321 1222222011 11222345678999999999999999999999999999988887
Q ss_pred hhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEEEecCCCHHHHHHHHHhcCeeecccChHHHHHHHhc
Q 011116 164 YHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINS 243 (493)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~ 243 (493)
...+. +.++|++++.+|++|..++...+.++..|+..++...+++..+++.++++++|++.++|+++..+++.
T Consensus 193 ~~~~~-------~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~ 265 (509)
T 3ivr_A 193 VDAWR-------LTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQ 265 (509)
T ss_dssp HHHTT-------CCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHH
T ss_pred HHhhC-------CCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhc
Confidence 77763 48999999999999999998777777777777777788999999999999999999999999999887
Q ss_pred ccCCCCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCccccccCCCCCCCCCccccccCCceEEEEcC
Q 011116 244 KLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIVDP 323 (493)
Q Consensus 244 ~~~~~~~l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~ 323 (493)
. ....++++|.++.+|++ ++.+.+.+.||++++++.||+||++.+++..... .....+|+|+++++++|+|
T Consensus 266 ~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~---~~~~~~G~p~~~~~~~i~d- 336 (509)
T 3ivr_A 266 A--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYR---DRPKSAGRPLFWRTVAVVD- 336 (509)
T ss_dssp C--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG---GSTTSCCEECTTCEEEEEC-
T ss_pred c--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccc---cCCCcccccCCCcEEEEEC-
Confidence 6 34557899999999987 8889999999999999999999998766553221 2234599999999999999
Q ss_pred CCCccCCCCCceEEEEeCccccccccCCcccccccccCCCeeeccceEEEcCCCcEEEEccc--CCeEEeCceeeChHHH
Q 011116 324 ATGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRL--KELIKYKAYQVPPVEL 401 (493)
Q Consensus 324 ~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~--~d~i~~~G~~i~~~~i 401 (493)
++++++++|+.|||+++|+.++.||+++++.+.+.|. +|||+|||++++++||++++.||. +|+||++|++|+|.+|
T Consensus 337 ~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~ei 415 (509)
T 3ivr_A 337 AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEV 415 (509)
T ss_dssp TTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTG-GGSEEEEEEEEECTTSCEEEEEEC------------------
T ss_pred CCCCCCCCCCceEEEEecCCccccccCCHHHhHHHhh-cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHH
Confidence 6699999999999999999999999999999999995 899999999999999999999999 8999999999999999
Q ss_pred HHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcceEEEeccccCCCCCccchHHH
Q 011116 402 EHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRREL 481 (493)
Q Consensus 402 e~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l 481 (493)
|++|.++|+|.+++|++.+++..++.+++++++.++...+.++++++++++|+.|++|+.++++++||+|++||++|+.|
T Consensus 416 E~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~L 495 (509)
T 3ivr_A 416 EGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAV 495 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHH
Confidence 99999999999999999999888999999999988877888999999999999999999999999999999999999999
Q ss_pred HHHHhhCCC
Q 011116 482 VTHAISGNL 490 (493)
Q Consensus 482 ~~~~~~~~~ 490 (493)
|+++.+...
T Consensus 496 r~~~~~~~~ 504 (509)
T 3ivr_A 496 KTAHGQEGH 504 (509)
T ss_dssp ---------
T ss_pred HHHHhhccc
Confidence 999988654
No 20
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2.4e-72 Score=613.42 Aligned_cols=465 Identities=35% Similarity=0.607 Sum_probs=312.1
Q ss_pred hHHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCcccCCC-
Q 011116 18 TLSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSYKLPS- 96 (493)
Q Consensus 18 ~lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~- 96 (493)
++|++| .+.|+++||+|+++++ |++++++++|||+++|++++|++|.++.+++.+++++++++++|++.+....+.+
T Consensus 100 ~lA~~L-~~~Gv~~gd~V~i~~~-ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 177 (979)
T 3tsy_A 100 QIAANF-HKLGVNQNDVVMLLLP-NCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPL 177 (979)
T ss_dssp HHHHHH-HHTTCCTTCEEEEECS-SCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHH
T ss_pred HHHHHH-HHcCCCCcCEEEEEeC-CCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHH
Confidence 359999 7789999999999999 9999999999999999999999999999999999999999999999877665542
Q ss_pred ----CCcEEEecCc----------hhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHHHHHHHH
Q 011116 97 ----NLRTILMDSP----------EFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAG 162 (493)
Q Consensus 97 ----~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~ 162 (493)
...++.++.. .|.++....... ..........++++++|+|||||||.||+|.++|+++...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~ 256 (979)
T 3tsy_A 178 QNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEA-SEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ 256 (979)
T ss_dssp HHTSCCEEEECCCCTTSCCCTTEEEGGGTSSCCSGG-GGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHH
T ss_pred hhcCCceEEEeCCcccccCCcccccHHHHhhccccc-cccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHH
Confidence 3334444432 123332222110 1122334567899999999999999999999999999988776
Q ss_pred hhhhcccCCCCCCCCCCcEEEEecChhHHHHH-HHHHHHHhcCCeEEEecCCCHHHHHHHHHhcCeeecccChHHHHHHH
Q 011116 163 YYHVTEETDPNEGPPPHPVSFFTLPMFHVFGF-FMLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFI 241 (493)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~ 241 (493)
...... ...++.+++++++.+|++|.+++ ..++.++..|+++++.+.+++..+++.++++++|++.++|+++..|+
T Consensus 257 ~~~~~~---~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 333 (979)
T 3tsy_A 257 QVDGEN---PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIA 333 (979)
T ss_dssp HHCSSS---CSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred HHHhhc---ccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHH
Confidence 544321 11245789999999999999998 56788999999999999899999999999999999999999999999
Q ss_pred hcccCCCCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCccccccC---CCCCCCCCccccccCCceE
Q 011116 242 NSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIG---PDEAERHGSVGRLAELMEA 318 (493)
Q Consensus 242 ~~~~~~~~~l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~---~~~~~~~~~~g~p~~~~~~ 318 (493)
+.......+++++|.+++||+++++++.+++.+.||++++++.||+||++.+.+.... .......+++|+|++++++
T Consensus 334 ~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 413 (979)
T 3tsy_A 334 KSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEM 413 (979)
T ss_dssp HCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEE
T ss_pred hCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEE
Confidence 9887777788999999999999999999999999999999999999999876554321 2223356789999999999
Q ss_pred EEEcCCCCccCCCCCceEEEEeCccccccccCCcccccccccCCCeeeccceEEEcCCCcEEEEcccCCeEEeCceeeCh
Q 011116 319 KIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPP 398 (493)
Q Consensus 319 ~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~ 398 (493)
+|+|++++++++.|+.|||+++|+.+++||+++++.+.+.|+.+|||+|||++++++||.+++.||.||+||++|++|+|
T Consensus 414 ~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~ 493 (979)
T 3tsy_A 414 KIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAP 493 (979)
T ss_dssp EEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC-----------
T ss_pred EEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECH
Confidence 99999899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcceEEEeccccCCCCCccch
Q 011116 399 VELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILR 478 (493)
Q Consensus 399 ~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r 478 (493)
.+||++|.++|+|.+++|++.+++..++.++++++..++...+.++++++++++|+.|++|+.++++++||+|++||++|
T Consensus 494 ~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r 573 (979)
T 3tsy_A 494 AELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILR 573 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeH
Confidence 99999999999999999999998888899999999887777788899999999999999999999999999999999999
Q ss_pred HHHHHHHhhC
Q 011116 479 RELVTHAISG 488 (493)
Q Consensus 479 ~~l~~~~~~~ 488 (493)
+.|++++.+.
T Consensus 574 ~~L~~~~~~~ 583 (979)
T 3tsy_A 574 KDLRAKLANG 583 (979)
T ss_dssp ----------
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 21
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=4.3e-71 Score=565.59 Aligned_cols=447 Identities=25% Similarity=0.326 Sum_probs=369.8
Q ss_pred HHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCcccCCC--
Q 011116 19 LSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSYKLPS-- 96 (493)
Q Consensus 19 lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~-- 96 (493)
+|++| .+.|+++||+|+++++ |++++++++|||+++|++++|+++.++.+++.+++++++++++|++++....+.+
T Consensus 61 lA~~L-~~~Gv~~gd~V~i~~~-n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~ 138 (529)
T 2v7b_A 61 FASAL-RTLGVHPEERILLVML-DTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQAL 138 (529)
T ss_dssp HHHHH-HHTTCCTTCEEEEECC-SSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHH
T ss_pred HHHHH-HHcCCCCCCEEEEEcC-CcHHHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHH
Confidence 49999 7889999999999999 9999999999999999999999999999999999999999999999765443221
Q ss_pred ----C--CcEEEecCc--------hhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHH-HHHHH
Q 011116 97 ----N--LRTILMDSP--------EFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNV-IAIIA 161 (493)
Q Consensus 97 ----~--~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~-~~~~~ 161 (493)
. ..++.++.. .+.++..... .........++++++++|||||||.||+|.++|+++ .....
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~ 214 (529)
T 2v7b_A 139 ESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAA----PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAEL 214 (529)
T ss_dssp HCC---CCEEEEECC------CCCBHHHHHHTSC----CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHH
T ss_pred hhccccCceEEEecccccccccccchhhhhccCC----CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHH
Confidence 1 223332321 2333333211 112223456799999999999999999999999998 45444
Q ss_pred HhhhhcccCCCCCCCCCCcEEEEecChhHHHHHH-HHHHHHhcCCeEEEe-cCCCHHHHHHHHHhcCeeecccChHHHHH
Q 011116 162 GYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFF-MLVRAASKGETLVFM-ERFDFEKMLKAVENYRVTYMPVSPPLIVA 239 (493)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~-~~~~~l~~G~~~~~~-~~~~~~~~~~~l~~~~~t~l~~~P~~~~~ 239 (493)
.....+ ++.+++++++.+|++|..++. .++.++..|+++++. +.+++..+++.++++++|++.++|+++..
T Consensus 215 ~~~~~~-------~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 287 (529)
T 2v7b_A 215 YAKPIL-------GIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYAN 287 (529)
T ss_dssp TCCCCC-------CCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHH
T ss_pred Hhhhcc-------CCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHH
Confidence 333333 457899999999999999984 567899999999987 66799999999999999999999999999
Q ss_pred HHhcccCCCCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCccccccCCCCCCCCCccccccCCceEE
Q 011116 240 FINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAK 319 (493)
Q Consensus 240 l~~~~~~~~~~l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~ 319 (493)
+++..........++|.+++|||++++++.+++++.| ++++++.||+||++.+.+.. .......+++|+|+++++++
T Consensus 288 l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~--~~~~~~~~~~G~p~~~~~~~ 364 (529)
T 2v7b_A 288 MLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEMLHIFLSN--RAGAVEYGTTGRPVPGYEIE 364 (529)
T ss_dssp HHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEEEEEECTTTSSEEEEC--CTTCCCTTSCCEECTTCEEE
T ss_pred HHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHh-CCceeeeEchhhcCceeecc--ccCCCccCCcccCCCCCEEE
Confidence 9876543332124799999999999999999999998 89999999999997665442 22224667899999999999
Q ss_pred EEcCCCCccCCCCCceEEEEeCccccccccCCcccccccccCCCeeeccceEEEcCCCcEEEEcccCCeEEeCceeeChH
Q 011116 320 IVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPV 399 (493)
Q Consensus 320 i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~ 399 (493)
|+| ++++++++|+.|||+++|+.++.||+++++.+.+.|. ++||+|||++++++||.+++.||.||+||++|++|+|.
T Consensus 365 i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~ 442 (529)
T 2v7b_A 365 LRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPV 442 (529)
T ss_dssp EEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHH
T ss_pred EEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhh-cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHH
Confidence 999 7799999999999999999999999999999998885 89999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCC---CHHHHHHHHHhcCCCCCCcceEEEeccccCCCCCcc
Q 011116 400 ELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNI---TEAEIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKI 476 (493)
Q Consensus 400 ~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~ 476 (493)
+||++|.++|+|.+++|++. ++..++.+++++++.++... ..++++++++++|+.|++|+.++++++||+|++||+
T Consensus 443 eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi 521 (529)
T 2v7b_A 443 EVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKI 521 (529)
T ss_dssp HHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCB
T ss_pred HHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccch
Confidence 99999999999999999998 55577888999998765432 246799999999999999999999999999999999
Q ss_pred chHHHHHH
Q 011116 477 LRRELVTH 484 (493)
Q Consensus 477 ~r~~l~~~ 484 (493)
+|+.|+++
T Consensus 522 ~r~~L~~~ 529 (529)
T 2v7b_A 522 QRFKLREQ 529 (529)
T ss_dssp CHHHHHC-
T ss_pred hHHhHhhC
Confidence 99999863
No 22
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2e-72 Score=579.70 Aligned_cols=448 Identities=21% Similarity=0.257 Sum_probs=290.7
Q ss_pred cchhhhHHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCcc
Q 011116 13 SSARFTLSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSY 92 (493)
Q Consensus 13 ~~~~~~lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~ 92 (493)
+++++ |++| .+.|+++||+|+++++ |++++++++|||+++|++++|+++.++.+++.++++.+++++++++.+...
T Consensus 109 ~~~~l--A~~L-~~~Gv~~gd~V~i~~~-n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~ 184 (570)
T 4gr5_A 109 RANRL--AHRL-VGLGVAPGTLVGVHLE-RGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSG 184 (570)
T ss_dssp HHHHH--HHHH-HHTTCCTTCEEEEECC-SSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred HHHHH--HHHH-HHcCCCCCCEEEEEeC-CCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhh
Confidence 34445 9999 7789999999999999 999999999999999999999999999999999999999999999987766
Q ss_pred cCCCCCcEEEecCchhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCC
Q 011116 93 KLPSNLRTILMDSPEFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDP 172 (493)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~ 172 (493)
.+.... .+.+.+.... .. ..........++++++|+|||||||.||+|.++|+++...... ...
T Consensus 185 ~~~~~~-~~~~~~~~~~----~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~------ 248 (570)
T 4gr5_A 185 RLTGTT-TLYVEDEAAS----DA----PAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDY------ 248 (570)
T ss_dssp SSCSSE-EEECCC---------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCS------
T ss_pred cccCCc-ceeeeccccc----cc----cccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhh------
Confidence 554322 2222221110 00 1122233567899999999999999999999999998765433 222
Q ss_pred CCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEEEec--CCCHHHHHHHHHhcCeeecccChHHHHHHHhcccCCCCC
Q 011116 173 NEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFME--RFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYD 250 (493)
Q Consensus 173 ~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~~~~--~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~ 250 (493)
.++.+++++++.+|++|..+...++.++..|+++++.+ ..++..+++.++++++|++.++|+++..|++... ..
T Consensus 249 -~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~ 324 (570)
T 4gr5_A 249 -AGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EA 324 (570)
T ss_dssp -SCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GG
T ss_pred -cCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hh
Confidence 24588999999999999877788899999999999985 4689999999999999999999999999987653 34
Q ss_pred CCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCccccccCCC--CCCCCCccccccCCceEEEEcCCCCcc
Q 011116 251 LSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPD--EAERHGSVGRLAELMEAKIVDPATGEA 328 (493)
Q Consensus 251 l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~--~~~~~~~~g~p~~~~~~~i~d~~~~~~ 328 (493)
++++|.+++|||++++++.+++.+.++++++++.||+||++++.+...... ......++|+|+++++++|+| +++++
T Consensus 325 ~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~ 403 (570)
T 4gr5_A 325 FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKP 403 (570)
T ss_dssp GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCB
T ss_pred CCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCCCC
Confidence 788999999999999999999999998999999999999987665432221 123445799999999999999 77999
Q ss_pred CCCCCceEEEEeCccccccccCCcccccccccCC--------CeeeccceEEEcCCCcEEEEcccCCeEEeCceeeChHH
Q 011116 329 LPPGQKGELWLRGPTIMKGYVGDDKATSETVHSE--------GWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVE 400 (493)
Q Consensus 329 ~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~--------~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ 400 (493)
++.|+.|||+++|+.++.||+++++.+.+.|..+ +||+|||+|++++||++++.||+||+||++|++|+|.+
T Consensus 404 ~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~e 483 (570)
T 4gr5_A 404 AANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGE 483 (570)
T ss_dssp CCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC----------------
T ss_pred CCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHH
Confidence 9999999999999999999999999998887433 79999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCC-CCCCHHHHHHHHHhcCCCCCCcceEEEeccccCCCCCccchH
Q 011116 401 LEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPG-SNITEAEIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRR 479 (493)
Q Consensus 401 ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~ 479 (493)
||++|.++|+|.+++|++.+++..++.+++++++.+. ...+.++++++++++|+.|++|+.++++++||+|++||++|+
T Consensus 484 IE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~ 563 (570)
T 4gr5_A 484 VEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRR 563 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchH
Confidence 9999999999999999999888788889999987654 356778999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 011116 480 ELVTHA 485 (493)
Q Consensus 480 ~l~~~~ 485 (493)
+|++..
T Consensus 564 ~L~~~g 569 (570)
T 4gr5_A 564 ALTGSG 569 (570)
T ss_dssp ------
T ss_pred hhhccC
Confidence 998764
No 23
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=5.7e-71 Score=566.94 Aligned_cols=439 Identities=19% Similarity=0.247 Sum_probs=373.0
Q ss_pred HHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCcccCCC--
Q 011116 19 LSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSYKLPS-- 96 (493)
Q Consensus 19 lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~-- 96 (493)
+|++| .+.|+++||+|+++++ |++++++++|||+++|++++|+++.++.+++.++++.++++++|++.+....+..
T Consensus 77 lA~~L-~~~Gv~~gd~V~i~~~-n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~ 154 (563)
T 1amu_A 77 LARIF-IEKGIGKDTLVGIMME-KSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ 154 (563)
T ss_dssp HHHHH-HHTTCCTTCEEEEECC-SSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC
T ss_pred HHHHH-HHcCCCCCCEEEEEeC-CCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc
Confidence 49999 7789999999999999 9999999999999999999999999999999999999999999998765433222
Q ss_pred -CCcEEEecCchhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCCCC
Q 011116 97 -NLRTILMDSPEFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEG 175 (493)
Q Consensus 97 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~ 175 (493)
...+..++...+. ... . ........++++++++|||||||.||+|.++|+++..........+ +
T Consensus 155 ~~~~~~~~~~~~~~---~~~----~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-------~ 219 (563)
T 1amu_A 155 FNGQVEIFEEDTIK---IRE----G-TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-------N 219 (563)
T ss_dssp CCSEEEECCCSTTT---TSC----C-SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-------C
T ss_pred ccCceeeecchhhc---ccc----C-ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-------C
Confidence 2233333322211 000 0 1122345678999999999999999999999999988877766665 3
Q ss_pred CCCCcEEEEecChhHHHHHHHHHHHHhcCCeEEEecC---CCHHHHHHHHHhcCeeecccChHHHHHHHhcccCCCCCCC
Q 011116 176 PPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFMER---FDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLS 252 (493)
Q Consensus 176 ~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~~~~~---~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~ 252 (493)
+.++|++++.+|++|..+++.++.++..|+++++.+. .++..+++.++++++|++.++|+++..+... .++
T Consensus 220 ~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~ 293 (563)
T 1amu_A 220 VTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RIL 293 (563)
T ss_dssp CCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCC
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccc
Confidence 4789999999999999998888999999999999865 5899999999999999999999998766432 367
Q ss_pred CeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCccccccCCC-CCCCCCccccccCCceEEEEcCCCCccCCC
Q 011116 253 SLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPD-EAERHGSVGRLAELMEAKIVDPATGEALPP 331 (493)
Q Consensus 253 ~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~-~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~ 331 (493)
++|.+++||+++++++.+++.+. +.+++.||+||++..++...... ......++|+|+++++++|+| +++++++.
T Consensus 294 ~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~ 369 (563)
T 1amu_A 294 SIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSV 369 (563)
T ss_dssp SCSEEEEESSCCCHHHHHHHTTT---SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCT
T ss_pred cccEEEEEEecCCHHHHHHHHhC---CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCCCCC
Confidence 89999999999999999998763 68999999999987665433222 123456899999999999999 77899999
Q ss_pred CCceEEEEeCccccccccCCcccccccccC------CCeeeccceEEEcCCCcEEEEcccCCeEEeCceeeChHHHHHHH
Q 011116 332 GQKGELWLRGPTIMKGYVGDDKATSETVHS------EGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLL 405 (493)
Q Consensus 332 g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l 405 (493)
|+.|||+++|+.+++||+++++.+.+.|.. ++||+|||+|++++||++++.||.||+||++|++|+|.+||++|
T Consensus 370 g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l 449 (563)
T 1amu_A 370 GEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESIL 449 (563)
T ss_dssp TCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHH
T ss_pred CCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHH
Confidence 999999999999999999999999888743 46999999999999999999999999999999999999999999
Q ss_pred hcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcceEEEeccccCCCCCccchHHHHHHH
Q 011116 406 HSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRRELVTHA 485 (493)
Q Consensus 406 ~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~ 485 (493)
.++|+|.+++|++.+++..++.+++++++.. ..+.++++++++++|+.|++|+.++++++||+|++||++|+.|++..
T Consensus 450 ~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~--~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 450 LKHMYISETAVSVHKDHQEQPYLCAYFVSEK--HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp TTSTTEEEEEEEEEECTTSCEEEEEEEEESS--CCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred HhCCCcceEEEEEeecCCCCeEEEEEEEeCC--CCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 9999999999999999888899999998764 46788999999999999999999999999999999999999998764
Q ss_pred h
Q 011116 486 I 486 (493)
Q Consensus 486 ~ 486 (493)
.
T Consensus 528 ~ 528 (563)
T 1amu_A 528 L 528 (563)
T ss_dssp C
T ss_pred c
Confidence 3
No 24
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=6.7e-70 Score=553.25 Aligned_cols=447 Identities=23% Similarity=0.351 Sum_probs=358.0
Q ss_pred chhhhHHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCccc
Q 011116 14 SARFTLSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSYK 93 (493)
Q Consensus 14 ~~~~~lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~~ 93 (493)
++++ |++| .+. +||+|+++++ |+++++++++||+++|++++|+++.++.+++.++++.+++++++++.+....
T Consensus 36 ~~~l--A~~L-~~~---~gd~V~i~~~-n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~ 108 (501)
T 3ipl_A 36 ASLL--AKRL-KAY---QQSRVGLYID-NSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELR 108 (501)
T ss_dssp HHHH--HHHH-HTT---CCSEEEEECC-SSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCT
T ss_pred HHHH--HHHH-HHc---CCCEEEEEcC-CCHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccc
Confidence 4444 9999 554 8999999999 9999999999999999999999999999999999999999999999876554
Q ss_pred CCC-----CCcEEEecC--c---------hhhhhhccC-cccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHH
Q 011116 94 LPS-----NLRTILMDS--P---------EFISLLNQN-EDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNV 156 (493)
Q Consensus 94 ~~~-----~~~~~~~~~--~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~ 156 (493)
... ....+.... . .+....... ..............++++++++|||||||.||+|.++|.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~ 188 (501)
T 3ipl_A 109 GFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNH 188 (501)
T ss_dssp TSEEEETTC--------------------------------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHH
T ss_pred cccccccccceeeeeecccccccccccccccccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHH
Confidence 321 010000000 0 000000000 00001111233457899999999999999999999999999
Q ss_pred HHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEEEecCCCHHHHHHHHHhcCeeecccChHH
Q 011116 157 IAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPL 236 (493)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~ 236 (493)
..........+. +.+++++++.+|++|..++..++.++..|+++++.+.++++.+++.++++++|++.++|++
T Consensus 189 ~~~~~~~~~~~~-------~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~ 261 (501)
T 3ipl_A 189 YASAIGCKESLG-------FDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQT 261 (501)
T ss_dssp HHHHHHHHHHTC-------CCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHH
T ss_pred HHHHHHHHHhhC-------CCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHH
Confidence 998888777763 4889999999999999999889999999999999998999999999999999999999999
Q ss_pred HHHHHhcccCCCCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCccccccCCCCCCCCCccccccCCc
Q 011116 237 IVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELM 316 (493)
Q Consensus 237 ~~~l~~~~~~~~~~l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~ 316 (493)
+..|++...... .++|.+++|||++++++.+++.+ + ++++++.||+||++................++|+|++++
T Consensus 262 ~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~-~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~ 336 (501)
T 3ipl_A 262 LNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQ-Y-NLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANV 336 (501)
T ss_dssp HHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHH-T-TCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTC
T ss_pred HHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHH-h-CCCEeccccccccccceeecCccccccCCCCCCCCCCCc
Confidence 999988764333 28999999999999999999988 4 899999999999987554422221223567899999999
Q ss_pred eEEEEcCCCCccCCCCCceEEEEeCccccccccCCcccccccccCCCeeeccceEEEcCCCcEEEEcccCCeEEeCceee
Q 011116 317 EAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQV 396 (493)
Q Consensus 317 ~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i 396 (493)
+++|+|++ +|+.|||+++|+.+++||+++++.+.. + .+|||+|||++++++||.+++.||.||+||++|++|
T Consensus 337 ~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v 408 (501)
T 3ipl_A 337 DVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENI 408 (501)
T ss_dssp EEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEE
T ss_pred EEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEccccceEEECCEEE
Confidence 99999954 456799999999999999999998887 5 589999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcceEEEeccccCCCCCcc
Q 011116 397 PPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKI 476 (493)
Q Consensus 397 ~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~ 476 (493)
+|.+||++|.++|+|.+++|++.+++..++.++++++.. ...+.++++++++++|+.|++|+.++++++||+|++||+
T Consensus 409 ~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~--~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi 486 (501)
T 3ipl_A 409 YPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKL 486 (501)
T ss_dssp CHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--SCCCHHHHHHHHHHHSCGGGSCSEEEECSSCC-------
T ss_pred CHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC--CCCCHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCE
Confidence 999999999999999999999999998899999998874 357889999999999999999999999999999999999
Q ss_pred chHHHHHHHhhCC
Q 011116 477 LRRELVTHAISGN 489 (493)
Q Consensus 477 ~r~~l~~~~~~~~ 489 (493)
+|++||+...+.+
T Consensus 487 ~R~~l~~~~~~~~ 499 (501)
T 3ipl_A 487 QRNKLYREGHHHH 499 (501)
T ss_dssp -------------
T ss_pred eHHHHhhcccccc
Confidence 9999999876653
No 25
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=3.5e-70 Score=554.52 Aligned_cols=432 Identities=26% Similarity=0.399 Sum_probs=356.7
Q ss_pred CCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCccc-CCCCCcEEEecCc
Q 011116 28 SLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSYK-LPSNLRTILMDSP 106 (493)
Q Consensus 28 gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~~ 106 (493)
+++.||+|+++++ |++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+.... .......+.++..
T Consensus 64 ~L~~~~~V~i~~~-~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 142 (505)
T 3nyq_A 64 RIGGAGRVAVWAT-PAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDVR 142 (505)
T ss_dssp TCC---CEEEECC-SSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCTT
T ss_pred hccCCCEEEEEcC-CCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhccccccccccc
Confidence 4556999999999 9999999999999999999999999999999999999999999998653211 1112223322210
Q ss_pred hhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEec
Q 011116 107 EFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTL 186 (493)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (493)
. ..........++++++++|||||||.||+|.++|.++...+......+. +.++|++++.+
T Consensus 143 -------~-----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~-------~~~~d~~l~~~ 203 (505)
T 3nyq_A 143 -------A-----RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ-------WTGEDVLVQGL 203 (505)
T ss_dssp -------C-----CCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHT-------CCTTCEEEECC
T ss_pred -------c-----ccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhC-------CCCCcEEEEec
Confidence 0 0112233456789999999999999999999999999998888877774 48899999999
Q ss_pred ChhHHHHH-HHHHHHHhcCCeEEEecCCCHHHHHHHHHhcCeeecccChHHHHHHHhcccCC---CCCCCCeeEEEecCC
Q 011116 187 PMFHVFGF-FMLVRAASKGETLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTD---KYDLSSLQLLGCGGA 262 (493)
Q Consensus 187 pl~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~---~~~l~~lr~v~~~Ge 262 (493)
|++|..++ ..++.++..|+++++.+.++++.+++.+ ++++|+++++|+++..+++..... ...++++|.+++||+
T Consensus 204 p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~ 282 (505)
T 3nyq_A 204 PLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSA 282 (505)
T ss_dssp CTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSS
T ss_pred cHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCC
Confidence 99999998 5689999999999999989999999999 889999999999999998754322 233578899999999
Q ss_pred CCCHHHHHHHHHhCCCCceeccccccccCCccccccCCCCCCCCCccccccCCceEEEEcCCCCccCCC---CCceEEEE
Q 011116 263 PLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIVDPATGEALPP---GQKGELWL 339 (493)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~---g~~Gel~v 339 (493)
++++++.+++.+.+ ++++++.||+||++...+. .........++|+|+++++++|+| +++++++. |+.|||++
T Consensus 283 ~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~--~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v 358 (505)
T 3nyq_A 283 ALPVHDHERIAAAT-GRRVIERYGMTETLMNTSV--RADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQV 358 (505)
T ss_dssp CCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEEC--CTTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEE
T ss_pred CCCHHHHHHHHHhc-CCeeecccchhhccccccc--CCCCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEE
Confidence 99999999999988 8999999999999865543 233344667899999999999999 66777765 89999999
Q ss_pred eCccccccccCCcccccccccCCCeeeccceEEEcCCCcEEEEccc-CCeEEeCceeeChHHHHHHHhcCCCcceEEEEe
Q 011116 340 RGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSNGFLFIVDRL-KELIKYKAYQVPPVELEHLLHSNPEIADAAVIP 418 (493)
Q Consensus 340 ~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~g~~~~~GR~-~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~ 418 (493)
+|+.++.||+++++.+.+.|..+|||+|||++++++||.+++.||+ ||+||++|++|+|.+||++|.++|+|.+++|++
T Consensus 359 ~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~ 438 (505)
T 3nyq_A 359 RGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTG 438 (505)
T ss_dssp ESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred ecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEe
Confidence 9999999999999999999988999999999999999999999997 589999999999999999999999999999999
Q ss_pred eeCCCCCeeEEEEEEeCC-CCCCCHHHHHHHHHhcCCCCCCcceEEEeccccCCCCCccchHHHHHH
Q 011116 419 YPDEEAGQIPMAFVVRKP-GSNITEAEIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRRELVTH 484 (493)
Q Consensus 419 ~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~ 484 (493)
.+++..++.+++++++.+ ....+.++++++++++|+.|++|+.++++++||+|++||++|+.|++.
T Consensus 439 ~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 505 (505)
T 3nyq_A 439 EPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNRD 505 (505)
T ss_dssp EEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGSCSEEEECSCCCC--------------
T ss_pred eECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhccC
Confidence 999988999999999876 456778999999999999999999999999999999999999999863
No 26
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=5.5e-70 Score=564.22 Aligned_cols=442 Identities=17% Similarity=0.178 Sum_probs=365.9
Q ss_pred cchhhhHHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCcc
Q 011116 13 SSARFTLSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSY 92 (493)
Q Consensus 13 ~~~~~~lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~ 92 (493)
+++++ |++| .+.|+++||+|+++++ |++++++++|||+++|++++|++|.++.+++.++++++++++++++.....
T Consensus 61 ~a~~l--A~~L-~~~Gv~~g~~V~i~~~-~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~ 136 (620)
T 4dg8_A 61 SAEQL--SDYL-LEHYPQPGVCLGVYGE-YSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPT 136 (620)
T ss_dssp HHHHH--HHHH-HHHCCSSCCEEEEESS-SCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCC
T ss_pred HHHHH--HHHH-HHcCCCCCCEEEEEeC-CCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccc
Confidence 35555 9999 7789999999999999 999999999999999999999999999999999999999999998765443
Q ss_pred cCCCCCcEEEecCchhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCC
Q 011116 93 KLPSNLRTILMDSPEFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDP 172 (493)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~ 172 (493)
... ......+. ..... ..........++++++++|||||||.||||.++|.++.+.+.. ...+
T Consensus 137 ~~~-~~~~~~~~-----~~~~~-----~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~----- 199 (620)
T 4dg8_A 137 PAN-GLPCVPVR-----HLPAA-----PASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL----- 199 (620)
T ss_dssp CCT-TSCEEEGG-----GCCCC-----CCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----
T ss_pred ccc-CCceeeec-----cCCcC-----CccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----
Confidence 322 12222211 11011 1112223456899999999999999999999999999776544 2333
Q ss_pred CCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEEEec--CCCHHHHHHHHHhcCeeecccChHHHHHHHhcccCCCCC
Q 011116 173 NEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFME--RFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYD 250 (493)
Q Consensus 173 ~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~~~~--~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~ 250 (493)
++.++++++..+|++|..+++.++.++..|+++++.+ .+++..+++.++++++|++.++|+++..+++.. ...
T Consensus 200 --~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~ 274 (620)
T 4dg8_A 200 --AFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDC 274 (620)
T ss_dssp --TTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGG
T ss_pred --CCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhh
Confidence 4588999999999999999999999999999999964 578999999999999999999999999998753 345
Q ss_pred CCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCccccccCCC--CCCCCCccccccCCceEEEEcCCCCcc
Q 011116 251 LSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPD--EAERHGSVGRLAELMEAKIVDPATGEA 328 (493)
Q Consensus 251 l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~--~~~~~~~~g~p~~~~~~~i~d~~~~~~ 328 (493)
++++|.+++|||++++++.+++.+.++++++++.||+||++.+++...... ......++|+|+++++++|+|++....
T Consensus 275 l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~ 354 (620)
T 4dg8_A 275 LGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEI 354 (620)
T ss_dssp GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBC
T ss_pred CCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCC
Confidence 788999999999999999999988888999999999999998765433322 223456899999999999999554444
Q ss_pred CCCCCceEEEEeCccccccccCCcccccccccCC-------CeeeccceEEEcCCCcEEEEcccCCeEEeCceeeChHHH
Q 011116 329 LPPGQKGELWLRGPTIMKGYVGDDKATSETVHSE-------GWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVEL 401 (493)
Q Consensus 329 ~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~-------~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~i 401 (493)
++.|+.|||+++|+.+++||+++++.+.+.|..+ +||+|||++++++||.++|.||.||+||++|++|+|.+|
T Consensus 355 ~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eI 434 (620)
T 4dg8_A 355 AEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPAL 434 (620)
T ss_dssp CSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHH
T ss_pred CCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHH
Confidence 8899999999999999999999999999988543 789999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcceEEEeccccCCCCCccchHHH
Q 011116 402 EHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRREL 481 (493)
Q Consensus 402 e~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l 481 (493)
|++|.++|+|.+++|++.+++..++. +++++... ..+.++++++|+.|++|+.++++++||+|++||++|+.|
T Consensus 435 E~~l~~~p~V~~a~Vv~~~~~~~~~l-v~~~~~~~------~~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L 507 (620)
T 4dg8_A 435 EQRFRRQPGILDCALLVRERNGVKQL-LCAWTGKA------DASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAAL 507 (620)
T ss_dssp HHHHHTSTTEEEEEEEEEEETTEEEE-EEEEEECT------TCCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHH
T ss_pred HHHHHhCCCccEEEEEEEeCCCceEE-EEEEecCh------HHHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHH
Confidence 99999999999999999887744444 44444321 224566778899999999999999999999999999999
Q ss_pred HHHHhh
Q 011116 482 VTHAIS 487 (493)
Q Consensus 482 ~~~~~~ 487 (493)
++.+.+
T Consensus 508 ~~~~~~ 513 (620)
T 4dg8_A 508 LRRLEE 513 (620)
T ss_dssp HHHTCS
T ss_pred hhcccc
Confidence 988754
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=5.5e-69 Score=554.05 Aligned_cols=464 Identities=17% Similarity=0.180 Sum_probs=288.2
Q ss_pred cchhhhHHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCcc
Q 011116 13 SSARFTLSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSY 92 (493)
Q Consensus 13 ~~~~~~lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~ 92 (493)
+++++ |++| .+.|+ +||+|+++++ |++++++++|||+++|++++|+++.++.+++.++++.++++++|++++...
T Consensus 64 ~~~~l--A~~L-~~~g~-~gd~V~i~~~-n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~ 138 (562)
T 3ite_A 64 TANQV--ANLI-IHASL-HGRAIAVSLD-RSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFD 138 (562)
T ss_dssp HHHHH--HHHH-HHTTC-SSCEEEEECC-SCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred HHHHH--HHHH-HhcCC-CCCEEEEEeC-CCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccc
Confidence 35555 9999 77899 7999999999 999999999999999999999999999999999999999999999877655
Q ss_pred cCCC--CCcEEEecCchhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhccc-
Q 011116 93 KLPS--NLRTILMDSPEFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEE- 169 (493)
Q Consensus 93 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~- 169 (493)
.+.. ....+......+........ .........++++++|+|||||||.||+|.++|.++..........+..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~ 214 (562)
T 3ite_A 139 GVELPPETKVLDTKNQSFIENLSTQD----TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNV 214 (562)
T ss_dssp TCCCCTTCEEEETTCHHHHHHHHHSC----CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred ccccCccceeecccchhhhhhccccc----ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccc
Confidence 4422 23344443333433333221 1222334557889999999999999999999999998877665443210
Q ss_pred CCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEEEecCCC-HHHHHHHHHhcCeeecccChHHHHHHHhcccCCC
Q 011116 170 TDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFMERFD-FEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDK 248 (493)
Q Consensus 170 ~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~~-~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~ 248 (493)
......+...+++++..|++|..++..++.++..|+++++.+... ++.+++.++++++|++.++|+++..+... .
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~ 290 (562)
T 3ite_A 215 APKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----P 290 (562)
T ss_dssp CGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----G
T ss_pred cchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----c
Confidence 000112467889999999999988888899999999999886543 57788999999999999999998776433 3
Q ss_pred CCCCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCccccccCCCCCCCCCccccccCCceEEEEcCCCCcc
Q 011116 249 YDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIVDPATGEA 328 (493)
Q Consensus 249 ~~l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~ 328 (493)
.+++++|.+++||+++++++.+++++.+ ++.+++.||+||++..++..... ......++|+|+++++++|+|++++++
T Consensus 291 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~i~d~~~~~~ 368 (562)
T 3ite_A 291 EDAPHLVYLGVGGEKMTPRTQQIWSSSD-RVALVNVYGPTEVTIGCSAGRIL-PDSDTRCIGHPLGDSVAHVLAPGSNEH 368 (562)
T ss_dssp GGSTTCCEEEEESSCCCHHHHHHHTTCS-SCEEEEEECCGGGCSCSEEEECC-TTSCTTEEEEECTTCEEEEECTTSSCB
T ss_pred cccCceEEEEEecCCCCHHHHHHHhhCC-CcEEEEeeccchheeeeeeeeec-CCCCCccccccCCCCeEEEEeCCCCCC
Confidence 4578999999999999999999999887 89999999999998766553322 234567899999999999999888999
Q ss_pred CCCCCceEEEEeCccccccccCCcccccccccCCC--eeeccceEEEcCCCcEEEEcccCCeEEeCceeeChHHHHHHHh
Q 011116 329 LPPGQKGELWLRGPTIMKGYVGDDKATSETVHSEG--WLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLH 406 (493)
Q Consensus 329 ~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~--~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~ 406 (493)
+++|+.|||+++|+.++.||+++++.+...+. +| ||+|||+|++++||++++.||.||+||++|++|+|.+||++|.
T Consensus 369 ~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~-~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~ 447 (562)
T 3ite_A 369 VKKGMAGELVIEGSLVANGYLNRPDAKGFCDI-NGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIR 447 (562)
T ss_dssp CCTTSCEEEEEESTTSCCEESSCTTCCSEEEE-TTEEEEEEEEEEEECTTSCEEEEEEC---------------------
T ss_pred CCCCCceEEEEeccccchhhCCCccccccccC-CCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHH
Confidence 99999999999999999999999998876653 44 9999999999999999999999999999999999999999999
Q ss_pred cC-CCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCC-------------HHHHHHHHHhcCCCCCCcceEEEeccccCC-
Q 011116 407 SN-PEIADAAVIPYPDEEAGQIPMAFVVRKPGSNIT-------------EAEIMDFIAKQVAPYKKIRRVAFINSIPKS- 471 (493)
Q Consensus 407 ~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t- 471 (493)
++ +.+.++++++..++..++..+++++...+.... .++|+++++++|+.|++|+.|+++++||+|
T Consensus 448 ~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~ 527 (562)
T 3ite_A 448 SLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRD 527 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCC
Confidence 98 788888888888877777666665554332222 348999999999999999999999999998
Q ss_pred CCCccchHHHHHHHhhCCCCC
Q 011116 472 TAGKILRRELVTHAISGNLSK 492 (493)
Q Consensus 472 ~~GK~~r~~l~~~~~~~~~~~ 492 (493)
++||++|+.|++++.+..+.+
T Consensus 528 ~~GKi~r~~L~~~~~~~~~~~ 548 (562)
T 3ite_A 528 TSAKTDAKALEHMFHTLSLGE 548 (562)
T ss_dssp ---------------------
T ss_pred CCCcchHHHHHHHHhccCHHH
Confidence 899999999999998765543
No 28
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=3e-67 Score=586.91 Aligned_cols=447 Identities=19% Similarity=0.257 Sum_probs=384.1
Q ss_pred cchhhhHHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCCcc
Q 011116 13 SSARFTLSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSY 92 (493)
Q Consensus 13 ~~~~~~lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~~~ 92 (493)
+++++ |++| .+.|+++||+|+++++ ++++++++++||+++|++++|++|.++.+++.++++.+++++++++.+...
T Consensus 498 ~a~~l--A~~L-~~~Gv~~g~~V~i~~~-~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~ 573 (1304)
T 2vsq_A 498 EANRI--ARRL-QKHGAGKGSVVALYTK-RSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKE 573 (1304)
T ss_dssp HHHHH--HHHH-HHTTCCTTCEEEECCC-SSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCT
T ss_pred HHHHH--HHHH-HhcCcCCcCEEEEEeC-CCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhh
Confidence 35555 9999 7789999999999999 999999999999999999999999999999999999999999999987665
Q ss_pred cCCC---CCcEEEecCchhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhccc
Q 011116 93 KLPS---NLRTILMDSPEFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEE 169 (493)
Q Consensus 93 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~ 169 (493)
.+.+ ....+.+++. .. .. .. .........+++++||+|||||||.||||+++|+++.+. ......+
T Consensus 574 ~~~~~~~~~~~~~~~~~-~~-~~-~~-----~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-- 642 (1304)
T 2vsq_A 574 QAAELPYTGTTLFIDDQ-TR-FE-EQ-----ASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-- 642 (1304)
T ss_dssp TSTTCCCCSEEEESSCG-GG-GG-SC-----SSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS--
T ss_pred hhhccCCCCcEEEeccc-cc-cc-cc-----cCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc--
Confidence 5322 2233444332 11 11 11 112223456899999999999999999999999999865 3333333
Q ss_pred CCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEEEecC---CCHHHHHHHHHhcCeeecccChHHHHHHHhcccC
Q 011116 170 TDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFMER---FDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLT 246 (493)
Q Consensus 170 ~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~~~~~---~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~ 246 (493)
++.++++++...|++|..+.+.++.++..|+++++.+. .++..+.+.++++++|++.++|+++..+.+..
T Consensus 643 -----~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~-- 715 (1304)
T 2vsq_A 643 -----AFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG-- 715 (1304)
T ss_dssp -----CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC--
T ss_pred -----CCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc--
Confidence 45889999999999999998999999999999999863 68999999999999999999999999997653
Q ss_pred CCCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccccCCccccccCCC--CCCCCCccccccCCceEEEEcCC
Q 011116 247 DKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTETGGAGSRVIGPD--EAERHGSVGRLAELMEAKIVDPA 324 (493)
Q Consensus 247 ~~~~l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE~g~~~~~~~~~~--~~~~~~~~g~p~~~~~~~i~d~~ 324 (493)
...++++|.+++|||++++++.+++.+.++++++++.||+||++..++...... ......++|+|+++++++|+| +
T Consensus 716 -~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~ 793 (1304)
T 2vsq_A 716 -EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILN-E 793 (1304)
T ss_dssp -SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEEC-T
T ss_pred -hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEEC-C
Confidence 223578999999999999999999999887789999999999998766543322 233456899999999999999 6
Q ss_pred CCccCCCCCceEEEEeCccccccccCCcccccccccC------CCeeeccceEEEcCCCcEEEEcccCCeEEeCceeeCh
Q 011116 325 TGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHS------EGWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPP 398 (493)
Q Consensus 325 ~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~ 398 (493)
++++++.|+.|||+|+|+.+++||+++++.|.+.|.. ++||+|||+|++++||.++|.||+||+||++|.+|++
T Consensus 794 ~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~ 873 (1304)
T 2vsq_A 794 QSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIEL 873 (1304)
T ss_dssp TSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEH
T ss_pred CcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCH
Confidence 7899999999999999999999999999999988842 4599999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcceEEEeccccCCCCCccch
Q 011116 399 VELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVAPYKKIRRVAFINSIPKSTAGKILR 478 (493)
Q Consensus 399 ~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r 478 (493)
.|||.+|.++|+|.+++|++..++..++.++++++... ..+.++++++++++||.|++|..++++++||+|++||++|
T Consensus 874 ~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~--~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR 951 (1304)
T 2vsq_A 874 EEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT--QLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNK 951 (1304)
T ss_dssp HHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS--SSCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCC
T ss_pred HHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC--CCCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCH
Confidence 99999999999999999999988877888999998764 4678999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 011116 479 RELVTHA 485 (493)
Q Consensus 479 ~~l~~~~ 485 (493)
+.|++..
T Consensus 952 ~~L~~~~ 958 (1304)
T 2vsq_A 952 RLLPKPD 958 (1304)
T ss_dssp SCCCCCC
T ss_pred hhcCCcc
Confidence 9987643
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.5e-68 Score=554.67 Aligned_cols=454 Identities=21% Similarity=0.271 Sum_probs=376.9
Q ss_pred HHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCC---CHHHHHHHHhhcCCeEEEEcCCCcccCC
Q 011116 19 LSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLS---STSEVSHQIQLSKPSIAFATSHTSYKLP 95 (493)
Q Consensus 19 lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~---~~~~l~~~l~~~~~~~il~~~~~~~~~~ 95 (493)
+|++| .+.|+++||+|+++++ |++++++++|||+++|++++|+++.+ +.+++.++++.+++++++++.+....+.
T Consensus 53 lA~~L-~~~gv~~gd~V~i~~~-~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 53 IAATL-QAEGAKPGDRVLLLFA-PGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp HHHHH-HHTTCCTTCEEEEECC-SSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred HHHHH-HHcCCCCCCEEEEEcC-CchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 49999 7789999999999999 99999999999999999999999988 4578999999999999999875444332
Q ss_pred CC--------CcEEEecCchhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhc
Q 011116 96 SN--------LRTILMDSPEFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVT 167 (493)
Q Consensus 96 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~ 167 (493)
.. .....+. ...+.... ..........++++++|+|||||||.||+|.++|.++...+......+
T Consensus 131 ~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~ 203 (590)
T 3kxw_A 131 ADELNTNPKFLKIPAIA---LESIELNR----SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF 203 (590)
T ss_dssp C-----CCEETTEEEEE---GGGCCGGG----GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT
T ss_pred Hhhhhhcccccccceee---chhccccc----cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh
Confidence 21 1111111 11111110 112233456789999999999999999999999999999988887776
Q ss_pred ccCCCCCCCCCCcEEEEecChhHHHHHHH-HHHHHhcCCeEEEecCC----CHHHHHHHHHhcCeeecccChHHHHHHHh
Q 011116 168 EETDPNEGPPPHPVSFFTLPMFHVFGFFM-LVRAASKGETLVFMERF----DFEKMLKAVENYRVTYMPVSPPLIVAFIN 242 (493)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~~----~~~~~~~~l~~~~~t~l~~~P~~~~~l~~ 242 (493)
. +.+++++++.+|++|..|+.. ++.+++.|+++++.+.. ++..+++.++++++|++.++|+++..+++
T Consensus 204 ~-------~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 276 (590)
T 3kxw_A 204 H-------MNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVK 276 (590)
T ss_dssp T-------CCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHH
T ss_pred C-------CCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHH
Confidence 4 489999999999999999965 88999999999998764 78999999999999999999999998877
Q ss_pred c---ccCCCCCCCCeeEEEecCCCCCHHHHHHHHHhCC-----CCceeccccccccCCccccccCC--------------
Q 011116 243 S---KLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFP-----NVEIRQGYGLTETGGAGSRVIGP-------------- 300 (493)
Q Consensus 243 ~---~~~~~~~l~~lr~v~~~Ge~~~~~~~~~~~~~~~-----~~~v~~~yG~tE~g~~~~~~~~~-------------- 300 (493)
. ......+++++|.+++||+++++++.+++.+.|+ ++.+++.||+||++.+++.....
T Consensus 277 ~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (590)
T 3kxw_A 277 RIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQ 356 (590)
T ss_dssp HCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCS
T ss_pred HhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHh
Confidence 5 3334567899999999999999999999999873 45799999999999876542210
Q ss_pred -----------CCCCCCCccccccCCceEEEEcCCCCccCCCCCceEEEEeCccccccccCCcccccccccC------CC
Q 011116 301 -----------DEAERHGSVGRLAELMEAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHS------EG 363 (493)
Q Consensus 301 -----------~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~------~~ 363 (493)
.......++|+|+++ ++|+|++++++++.|+.|||+++||.++.||+++++.+.+.|.. +|
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g 434 (590)
T 3kxw_A 357 DHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERS 434 (590)
T ss_dssp SSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---
T ss_pred cCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCC
Confidence 111233578999988 88899888999999999999999999999999999999988853 24
Q ss_pred --eeeccceEEEcCCCcEEEEcccCCeEEeCceeeChHHHHHHH-hcCCCcc--eEEEEeeeCCCCCeeEEEEEEeCCCC
Q 011116 364 --WLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLL-HSNPEIA--DAAVIPYPDEEAGQIPMAFVVRKPGS 438 (493)
Q Consensus 364 --~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l-~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~ 438 (493)
||+|||+|+++ +|.+++.||.||+||++|++|+|.+||++| ..+|.|. ++++++++++. ++.+++++++.++.
T Consensus 435 ~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~ 512 (590)
T 3kxw_A 435 AIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRF 512 (590)
T ss_dssp CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTT
T ss_pred CcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEecccc
Confidence 99999999999 999999999999999999999999999999 7889998 79999998875 67788888887653
Q ss_pred --CCCHHHHHHHHHhcCCC-CCCcc-eEEEe--ccccCCCCCccchHHHHHHHhhCCCCC
Q 011116 439 --NITEAEIMDFIAKQVAP-YKKIR-RVAFI--NSIPKSTAGKILRRELVTHAISGNLSK 492 (493)
Q Consensus 439 --~~~~~~l~~~l~~~l~~-~~~p~-~~~~~--~~lP~t~~GK~~r~~l~~~~~~~~~~~ 492 (493)
..+.+++.++++++++. ++.|. .+.++ ++||+|++||++|+.||+++.++++..
T Consensus 513 ~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~~~~~ 572 (590)
T 3kxw_A 513 MDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKTLPI 572 (590)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHTCSCC
T ss_pred ccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcCCCce
Confidence 34567899999998875 77775 55555 799999999999999999999988764
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=9.9e-67 Score=539.77 Aligned_cols=452 Identities=20% Similarity=0.300 Sum_probs=371.5
Q ss_pred chhhhHHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCC-------HHHHHHHHhhcCCeEEEE
Q 011116 14 SARFTLSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSS-------TSEVSHQIQLSKPSIAFA 86 (493)
Q Consensus 14 ~~~~~lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~-------~~~l~~~l~~~~~~~il~ 86 (493)
++++ |++| .+.|+++||+|+++++ |+++++++++||+++|++++|+++.++ .+++.++++.++++++++
T Consensus 59 ~~~l--A~~L-~~~Gv~~gd~V~i~~~-~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~ 134 (576)
T 3gqw_A 59 AEAG--AKRL-LSLNLKKGDRVALIAE-TSSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIIT 134 (576)
T ss_dssp HHHH--HHHH-HHTCCCTTCEEEEECC-SSHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEE
T ss_pred HHHH--HHHH-HHcCCCCCCEEEEEcC-CcHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEe
Confidence 4444 9999 7789999999999999 999999999999999999999999998 899999999999999999
Q ss_pred cCCCcccCCC----CCcEEEecCchhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHHHHHHHH
Q 011116 87 TSHTSYKLPS----NLRTILMDSPEFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAG 162 (493)
Q Consensus 87 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~ 162 (493)
+.+....+.. ......+. ..+....... ........++++++++|||||||.||+|.++|+++...+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~ 207 (576)
T 3gqw_A 135 GDEWLPLVNAATHDNPELHVLS-HAWFKALPEA------DVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRA 207 (576)
T ss_dssp CGGGHHHHHHHGGGCTTCEEEE-HHHHHTSCCC------CCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHH
T ss_pred cHHHHHHHHHhhccCCcceecc-hhhhhccccc------ccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHH
Confidence 8765543321 11111111 1111111111 12233456799999999999999999999999999888776
Q ss_pred hhhh-cccCCCCCCCCCCcEEEEecChhHHHHHH-HHHHHHhcCCeEEEecC----CCHHHHHHHHHhcCeeecccChHH
Q 011116 163 YYHV-TEETDPNEGPPPHPVSFFTLPMFHVFGFF-MLVRAASKGETLVFMER----FDFEKMLKAVENYRVTYMPVSPPL 236 (493)
Q Consensus 163 ~~~~-~~~~~~~~~~~~~~~~~~~~pl~~~~g~~-~~~~~l~~G~~~~~~~~----~~~~~~~~~l~~~~~t~l~~~P~~ 236 (493)
.... + ++.++|++++.+|++|..++. .++.++..|+++++... .++..+++.++++++|++.++|++
T Consensus 208 ~~~~~~-------~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~ 280 (576)
T 3gqw_A 208 ISHDGI-------KLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFG 280 (576)
T ss_dssp HHHTTS-------CCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHH
T ss_pred hhhccc-------CCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHH
Confidence 6544 3 458999999999999999985 57778889999888753 578899999999999999999999
Q ss_pred HHHHHhccc---CCCCCCCCeeEEEecCCCCCHHHHHHHHHhCC-----CCceeccccccccCCccccccCCCCC-----
Q 011116 237 IVAFINSKL---TDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFP-----NVEIRQGYGLTETGGAGSRVIGPDEA----- 303 (493)
Q Consensus 237 ~~~l~~~~~---~~~~~l~~lr~v~~~Ge~~~~~~~~~~~~~~~-----~~~v~~~yG~tE~g~~~~~~~~~~~~----- 303 (493)
+..+.+... ....+++++|.+++|||++++++.+++.+.|+ ++.+++.||+||++..++........
T Consensus 281 ~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~ 360 (576)
T 3gqw_A 281 YELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEV 360 (576)
T ss_dssp HHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEE
T ss_pred HHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCcccccc
Confidence 988766433 23456899999999999999999999999874 67899999999999876653221100
Q ss_pred ---------------------CCCCccccccCCceEEEEcCCCCccCCCCCceEEEEeCccccccccCCcccccccccCC
Q 011116 304 ---------------------ERHGSVGRLAELMEAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSE 362 (493)
Q Consensus 304 ---------------------~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 362 (493)
....++|+|+++++++|+| +++++++.|+.|||+++|+.+++||+++++.+.+.+ .+
T Consensus 361 ~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~-~~ 438 (576)
T 3gqw_A 361 DRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVAERVVGHICISGPSLMSGYFGDQVSQDEIA-AT 438 (576)
T ss_dssp EHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHH-HH
T ss_pred chhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCCCCCCeEEEEEeCccccccccCCcccccccc-CC
Confidence 0112789999999999999 889999999999999999999999999998776654 68
Q ss_pred CeeeccceEEEcCCCcEEEEcccCCeEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCCH
Q 011116 363 GWLKTGDLCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITE 442 (493)
Q Consensus 363 ~~~~TgD~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~ 442 (493)
|||+|||+|++ +||.+++.||.||+||++|++|+|.+||++|.++|+|.++++++..++.. ...++++.........
T Consensus 439 g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~--~~~~~~~~~~~~~~~~ 515 (576)
T 3gqw_A 439 GWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQE--KIILQIQCRISDEERR 515 (576)
T ss_dssp SCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHTTSSSCCTTSEEEEECTTS--CEEEEEECCCCCHHHH
T ss_pred CeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHHhCcccccccEEEEEcCCc--cEEEEEEEecCchhHH
Confidence 99999999999 79999999999999999999999999999999999999998888877633 3445555544444455
Q ss_pred HHHHHHHHhcC-CCCCCcceEEEec--cccCCCCCccchHHHHHHHhhC
Q 011116 443 AEIMDFIAKQV-APYKKIRRVAFIN--SIPKSTAGKILRRELVTHAISG 488 (493)
Q Consensus 443 ~~l~~~l~~~l-~~~~~p~~~~~~~--~lP~t~~GK~~r~~l~~~~~~~ 488 (493)
.++++++++++ +.+++|..+.+++ +||+|++||++|+.|++++.+.
T Consensus 516 ~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~~ 564 (576)
T 3gqw_A 516 GQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARAEAKKRYQKA 564 (576)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEEECSSCSCBCTTSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCceeEEEECCCCcCcCCCccchHHHHHHHHHHH
Confidence 78888998888 6899999998887 9999999999999999998764
No 31
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=6.7e-54 Score=414.68 Aligned_cols=317 Identities=17% Similarity=0.225 Sum_probs=270.3
Q ss_pred CCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEEE
Q 011116 130 QSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVF 209 (493)
Q Consensus 130 ~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~~ 209 (493)
.+++++|+|||||||.||+|.++|+++.+.+......+. +.++|++++.+|++|++|+..++.++..|+++++
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~-------~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~ 108 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALS-------LGPGTRALVCLNVGYIAGLMMLVRGMELDWELTV 108 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTT-------CCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhC-------CCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEe
Confidence 578999999999999999999999999998888877774 4899999999999999999889999999999998
Q ss_pred ecCCCHHHHHHHHHhcCeeecccChHHHHHHHhcccCCCCCCCCeeEEEecCCCCCHHHHHHHHHhCCCCceeccccccc
Q 011116 210 MERFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQGYGLTE 289 (493)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~~yG~tE 289 (493)
.++. ...++.++++++|++.++|+++..|++... ...+++++|.+++||+++++++.+++++. ++++++.||+||
T Consensus 109 ~~~~--~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TE 183 (358)
T 4gs5_A 109 TEPT--ANPLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTE 183 (358)
T ss_dssp ECCC--SCTTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGG
T ss_pred cCcc--ccHHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEecccccc
Confidence 8542 234677899999999999999999988764 34468899999999999999999999875 899999999999
Q ss_pred cCCccccccCCCCCCCCCccccccCCceEEEEcCCCCccCCCCCceEEEEeCccccccccCCcccccccccCCCeeeccc
Q 011116 290 TGGAGSRVIGPDEAERHGSVGRLAELMEAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGD 369 (493)
Q Consensus 290 ~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD 369 (493)
++...+.... .....+.+|.+.|++++.+.+ .||++++|+.. .+|||+|||
T Consensus 184 t~~~~~~~~~--~~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~----------------~~g~~~TGD 234 (358)
T 4gs5_A 184 TVSHVALKAL--NGPEASELYVFLPGIQYGVDE-----------RGCLHISGAVT----------------NGQTVQTND 234 (358)
T ss_dssp GSSEEEEEEC--SSTTCCSCEEECTTCEEEECT-----------TSEEEEESGGG----------------TTCCEEEEE
T ss_pred ccceeecccc--cccccceeeccCCCeEEEecC-----------cCceEEecccc----------------cCcceecCC
Confidence 9876655322 234567789999999888754 39999987632 478999999
Q ss_pred eEEEcCCCcEEEEcccCCeEEeCceeeChHHHHHHHh---cCCCcceEEEE-eeeCCCCCeeEEEEEEeCCCCCCCHHHH
Q 011116 370 LCYFDSNGFLFIVDRLKELIKYKAYQVPPVELEHLLH---SNPEIADAAVI-PYPDEEAGQIPMAFVVRKPGSNITEAEI 445 (493)
Q Consensus 370 ~~~~~~~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~---~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l 445 (493)
+++++++| ++++||.||+||++|++|+|.+||+.|. +||+|.+++|+ +.+++..++.++++++.... ....+++
T Consensus 235 lg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-~~~~~~l 312 (358)
T 4gs5_A 235 LVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-EALTERL 312 (358)
T ss_dssp EEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-HHHHHHH
T ss_pred ccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-CcCHHHH
Confidence 99999998 6677999999999999999999998774 57999998876 56677788888888876443 4456789
Q ss_pred HHHHHhcCCCCCCcceEEEeccccCCCCCccchHHHHHHHhhCC
Q 011116 446 MDFIAKQVAPYKKIRRVAFINSIPKSTAGKILRRELVTHAISGN 489 (493)
Q Consensus 446 ~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~~~~ 489 (493)
+++++++|+.|++|++|+++++||+|++||++|++|++++.+..
T Consensus 313 ~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 313 TAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp HHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC---
T ss_pred HHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhc
Confidence 99999999999999999999999999999999999999887643
No 32
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=2.1e-53 Score=430.21 Aligned_cols=353 Identities=20% Similarity=0.249 Sum_probs=280.6
Q ss_pred chhhhHHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCC---CCCHHHHHHHHhhcCCeEEEEcCCC
Q 011116 14 SARFTLSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANP---LSSTSEVSHQIQLSKPSIAFATSHT 90 (493)
Q Consensus 14 ~~~~~lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~---~~~~~~l~~~l~~~~~~~il~~~~~ 90 (493)
+++ +|++| .+.|+ +||+|+++++ |++++++++|||+++|++++|+++ .++.+++.++++.++++++|++.+.
T Consensus 68 ~~~--lA~~L-~~~g~-~gd~V~i~~~-n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~ 142 (480)
T 3t5a_A 68 TLN--VAQEL-SRCGS-TGDRVVISAP-QGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSA 142 (480)
T ss_dssp HHH--HHHHH-TTSSC-TTCEEEEECC-SSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTT
T ss_pred HHH--HHHHH-HhcCC-CCCEEEEEcC-CcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhH
Confidence 444 49999 77896 9999999999 999999999999999999999999 7889999999999999999999876
Q ss_pred cccCCCC---------CcEEEecCchhhhhhccCcccccccCCCCCCCCCCeEEEEccCCCCCCccceecchHHHHHHHH
Q 011116 91 SYKLPSN---------LRTILMDSPEFISLLNQNEDVADFANSNMTVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIA 161 (493)
Q Consensus 91 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~ 161 (493)
...+.+. ..++.++. ..... ..........++++++|+|||||||.||+|.++|+++...+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~ 213 (480)
T 3t5a_A 143 VDDVVQHVARRPGESPPSIIEVDL-----LDLDA----PNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFE 213 (480)
T ss_dssp HHHHHHTCC------CCEEEEGGG-----SCTTC----C---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHH
T ss_pred HHHHHHHHhccccccccceeEecc-----ccccc----ccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHH
Confidence 5543321 11222221 10111 112223455678999999999999999999999999998888
Q ss_pred HhhhhcccCCCCCCCCCCcEEEEecChhHHHHH-HHHHHHHhcCCeEEEecCC----CHHHHHHHHHhcCeeecccChHH
Q 011116 162 GYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGF-FMLVRAASKGETLVFMERF----DFEKMLKAVENYRVTYMPVSPPL 236 (493)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~G~~~~~~~~~----~~~~~~~~l~~~~~t~l~~~P~~ 236 (493)
.....+..... ....+++++++.+|++|..++ ..++.++..|+++++.+.. ++..+++.++++++| +.++|++
T Consensus 214 ~~~~~~~~~~~-~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~ 291 (480)
T 3t5a_A 214 QLMSGYFADTD-GIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNF 291 (480)
T ss_dssp HHHHHHCTTTT-TCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHH
T ss_pred HHHHHhccccc-cCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHH
Confidence 77766643110 001238999999999999997 5789999999999998653 889999999999999 8899999
Q ss_pred HHHHHhc----ccCCCCCCCCeeEEEecCCCCCHHHHHHHHHhC-----CCCceeccccccccCCccccccCCCC-----
Q 011116 237 IVAFINS----KLTDKYDLSSLQLLGCGGAPLGKEVTLKFKEKF-----PNVEIRQGYGLTETGGAGSRVIGPDE----- 302 (493)
Q Consensus 237 ~~~l~~~----~~~~~~~l~~lr~v~~~Ge~~~~~~~~~~~~~~-----~~~~v~~~yG~tE~g~~~~~~~~~~~----- 302 (493)
+..++.. ......+++++|.+++|||++++++.+++.+.| +++.+++.||+||++..++.......
T Consensus 292 ~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 371 (480)
T 3t5a_A 292 AFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVD 371 (480)
T ss_dssp HHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEE
T ss_pred HHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEE
Confidence 8888764 233456789999999999999999999999998 34689999999999886655322110
Q ss_pred ------------------CCCCCccccccCCceEEEEcCCCCccCCCCCceEEEEeCccccccccCCccccccccc----
Q 011116 303 ------------------AERHGSVGRLAELMEAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVH---- 360 (493)
Q Consensus 303 ------------------~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~---- 360 (493)
.....++|+|++ ++++|+|++++++++.|+.|||+|+|+.+++||+++++.+.+.|.
T Consensus 372 ~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~ 450 (480)
T 3t5a_A 372 FDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIV 450 (480)
T ss_dssp ECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCS
T ss_pred ecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhc
Confidence 123457999999 999999987789999999999999999999999999999999885
Q ss_pred -------CCCeeeccceEEEcCCCcEEEEcc
Q 011116 361 -------SEGWLKTGDLCYFDSNGFLFIVDR 384 (493)
Q Consensus 361 -------~~~~~~TgD~~~~~~~g~~~~~GR 384 (493)
.+|||+|||+|+++ ||+++|.||
T Consensus 451 ~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 451 TPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp SCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred cccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 46799999999996 999999998
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=4.5e-50 Score=400.06 Aligned_cols=330 Identities=21% Similarity=0.201 Sum_probs=273.6
Q ss_pred CCCC-CCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHH-HHHHHHHhcC
Q 011116 127 TVYQ-SDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGF-FMLVRAASKG 204 (493)
Q Consensus 127 ~~~~-~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~l~~G 204 (493)
...+ +++++++|||||||.||+|.++|.++..+.......+.. .++.+++++++..|++|..+. ...+.++..|
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G 156 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM----VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLG 156 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH----TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHT
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH----cCCCCCCEEEECcccccchhHHHHHHHHHHcC
Confidence 3445 889999999999999999999999998776655433211 145889999999998655544 6788889999
Q ss_pred CeEEEecCCCHHHHHHHHHhcCeeecccChHHHHHHHhcccCCCCC--CCCeeEEEecCCCCCHHHHHHHHHhCCCCcee
Q 011116 205 ETLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYD--LSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIR 282 (493)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~--l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~ 282 (493)
+++++.+..+++.+++.++++++|+++++|+++..|++........ ++++|.+++|||++++++.+++++.| +++++
T Consensus 157 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~ 235 (436)
T 3qov_A 157 CLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAY 235 (436)
T ss_dssp CEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEE
T ss_pred CEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEE
Confidence 9999988889999999999999999999999999998876544443 78999999999999999999999999 89999
Q ss_pred ccccccccCCccccccCCCCCCCCCccccccCCceEEEEcCCCCccCCCCCceEEEEeCccccccccCCcccccccccCC
Q 011116 283 QGYGLTETGGAGSRVIGPDEAERHGSVGRLAELMEAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSE 362 (493)
Q Consensus 283 ~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 362 (493)
+.||+||+++.+..... ......+.|.++++++|+|+++++++++|+.|||+++|.. .+.+ ..
T Consensus 236 ~~YG~TE~~~~~~~~~~----~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~------------~~~~-~~ 298 (436)
T 3qov_A 236 NSFGMTEMNGPGVAFEC----QEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLD------------REMM-PL 298 (436)
T ss_dssp EEEEEGGGTEEEEEEEC----TTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESS------------CCSS-CC
T ss_pred ecCcchhhcCCeeEEec----CCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccC------------cCCc-eE
Confidence 99999999544222122 1223467788899999999999999999999999999742 2233 57
Q ss_pred CeeeccceEEEcCCC------c---EEEEcccCCeEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEE
Q 011116 363 GWLKTGDLCYFDSNG------F---LFIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVV 433 (493)
Q Consensus 363 ~~~~TgD~~~~~~~g------~---~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 433 (493)
+||+|||+++++++| + +++.||.||+||++|++|+|.+||++|.++|+|.++++++..++..++.++++++
T Consensus 299 ~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~ 378 (436)
T 3qov_A 299 IRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVE 378 (436)
T ss_dssp CSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 899999999999998 5 6999999999999999999999999999999999999999988878889999999
Q ss_pred eCCCCCCC----HHHHHHHHHhcCCCC-CCcceEEEec--cccCCCCCccchHH
Q 011116 434 RKPGSNIT----EAEIMDFIAKQVAPY-KKIRRVAFIN--SIPKSTAGKILRRE 480 (493)
Q Consensus 434 ~~~~~~~~----~~~l~~~l~~~l~~~-~~p~~~~~~~--~lP~t~~GK~~r~~ 480 (493)
+. +...+ .+++.++++++++.+ +.|..+.+++ +||+|+ ||++|..
T Consensus 379 ~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 379 LS-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp EC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEE
T ss_pred Ec-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEE
Confidence 98 54444 578999999999888 8999999998 999999 9998864
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=2e-49 Score=396.18 Aligned_cols=334 Identities=19% Similarity=0.211 Sum_probs=277.1
Q ss_pred CCCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecCh-hHHHHHHHHHHHHhcCC
Q 011116 127 TVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPM-FHVFGFFMLVRAASKGE 205 (493)
Q Consensus 127 ~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl-~~~~g~~~~~~~l~~G~ 205 (493)
...++++++++|||||||.||+|.++|.++..........+.. .++.++|++++..|+ +|..++...+.++..|+
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~----~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~ 163 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA----AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGC 163 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH----TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH----cCCCCCCEEEEeccCcccccHHHHHHHHHHcCC
Confidence 3467889999999999999999999999998766544432211 145889999999998 57777777888999999
Q ss_pred eEEEecCCCHHHHHHHHHhcCeeecccChHHHHHHHhcccCCCCC--CCCeeEEEecCCCCCHHHHHHHHHhCCCCceec
Q 011116 206 TLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYD--LSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQ 283 (493)
Q Consensus 206 ~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~--l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~ 283 (493)
+++..+..+++.+++.++++++|++.++|+++..|++.......+ ++++|.+++|||++++++.+++++.| ++++++
T Consensus 164 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~ 242 (443)
T 2y4o_A 164 MVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALD 242 (443)
T ss_dssp EEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEE
T ss_pred EEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEe
Confidence 999888889999999999999999999999999998865443333 47899999999999999999999999 899999
Q ss_pred cccccccCCc-cccccCCCCCCCCCccccccCCceEEEEcCCCCccCCCCCceEEEEeCccccccccCCcccccccccCC
Q 011116 284 GYGLTETGGA-GSRVIGPDEAERHGSVGRLAELMEAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSE 362 (493)
Q Consensus 284 ~yG~tE~g~~-~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 362 (493)
.||+||+++. .+. .... .....+.|.++++++|+|+++++++++|+.|||+++|. +.+.| ..
T Consensus 243 ~YG~TE~~g~~~~~-~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------------t~~~~-p~ 305 (443)
T 2y4o_A 243 IYGLSEVMGPGVAC-ECVE---TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL------------TKEAM-PV 305 (443)
T ss_dssp EEEETTTTEEEEEE-ECTT---TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CC
T ss_pred ccCchhhcCCeEEe-ccCC---CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC------------CcccC-hh
Confidence 9999997432 222 1111 11135667789999999988899999999999999973 22233 57
Q ss_pred CeeeccceEEEcCC-CcE-----EEEcccCCeEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCC
Q 011116 363 GWLKTGDLCYFDSN-GFL-----FIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKP 436 (493)
Q Consensus 363 ~~~~TgD~~~~~~~-g~~-----~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 436 (493)
+||+|||+++++++ |.+ ++.||.||+||++|++|+|.+||++|.++|+|.++++++..++..++.+++++++.+
T Consensus 306 ~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~ 385 (443)
T 2y4o_A 306 IRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRS 385 (443)
T ss_dssp SSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECH
T ss_pred heeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECC
Confidence 89999999999999 986 899999999999999999999999999999999999998877766788889998865
Q ss_pred --C---CCCCHHHHHHHHHhcCCCC-CCcceEEEe--ccccCCCCCccchHHHH
Q 011116 437 --G---SNITEAEIMDFIAKQVAPY-KKIRRVAFI--NSIPKSTAGKILRRELV 482 (493)
Q Consensus 437 --~---~~~~~~~l~~~l~~~l~~~-~~p~~~~~~--~~lP~t~~GK~~r~~l~ 482 (493)
+ ...+.++++++++++|+.+ .+|..+.++ ++||+|++||++|+..+
T Consensus 386 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~ 439 (443)
T 2y4o_A 386 EAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDR 439 (443)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEEC
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEec
Confidence 2 2234578999999999876 488888888 59999999999997543
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=3e-49 Score=394.21 Aligned_cols=331 Identities=20% Similarity=0.218 Sum_probs=276.5
Q ss_pred CCCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecCh-hHHHHHHHHHHHHhcCC
Q 011116 127 TVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPM-FHVFGFFMLVRAASKGE 205 (493)
Q Consensus 127 ~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl-~~~~g~~~~~~~l~~G~ 205 (493)
...++++++++|||||||.||+|+++|.++..........+.. .++.++|++++..|+ +|..++...+.++..|+
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~ 161 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA----AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGL 161 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH----TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH----cCCCCCCEEEEcccccccccchHHHHHHHHcCC
Confidence 4467899999999999999999999999988766544332111 145789999999998 67887777889999999
Q ss_pred eEEEecCCCHHHHHHHHHhcCeeecccChHHHHHHHhcccCCCCC--CCCeeEEEecCCCCCHHHHHHHHHhCCCCceec
Q 011116 206 TLVFMERFDFEKMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYD--LSSLQLLGCGGAPLGKEVTLKFKEKFPNVEIRQ 283 (493)
Q Consensus 206 ~~~~~~~~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~--l~~lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~~ 283 (493)
+++..+..+++.+++.++++++|+++++|+++..|++.......+ ++++|.+++|||++++++.+++++.| ++++++
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~ 240 (437)
T 2y27_A 162 TVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVD 240 (437)
T ss_dssp EEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEe
Confidence 999888789999999999999999999999999998865433333 47899999999999999999999999 899999
Q ss_pred cccccccCCc-cccccCCCCCCCCCccccccCCceEEEEcCCCCccCCCCCceEEEEeCccccccccCCcccccccccCC
Q 011116 284 GYGLTETGGA-GSRVIGPDEAERHGSVGRLAELMEAKIVDPATGEALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSE 362 (493)
Q Consensus 284 ~yG~tE~g~~-~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~ 362 (493)
.||+||+++. .+. .... .....+.|.++++++|+|+++++++++|+.|||+++|. +.+.+ .+
T Consensus 241 ~YG~TE~~g~~~~~-~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------------t~~~~-~~ 303 (437)
T 2y27_A 241 IYGLSEVMGPGVAS-ECVE---TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL------------TKEAL-PI 303 (437)
T ss_dssp EEEETTTTEEEEEE-CCTT---TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------------SCSSS-CC
T ss_pred cCCchhhcCCeeEE-ecCC---CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC------------CcCCc-hh
Confidence 9999998432 222 1111 11135667789999999988899999999999999973 22233 57
Q ss_pred CeeeccceEEEcC-CCcE-----EEEcccCCeEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCC
Q 011116 363 GWLKTGDLCYFDS-NGFL-----FIVDRLKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKP 436 (493)
Q Consensus 363 ~~~~TgD~~~~~~-~g~~-----~~~GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 436 (493)
+||+|||++++++ +|++ ++.||.||+||++|++|+|.+||++|.++|+|.++++++..++..++.+++++++.+
T Consensus 304 ~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~ 383 (437)
T 2y27_A 304 IRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCP 383 (437)
T ss_dssp CSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCT
T ss_pred heeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECC
Confidence 8999999999999 6985 899999999999999999999999999999999999998887767788999999876
Q ss_pred CCC---CCHHHHHHHHHhcCCCC-CCcceEEEe--ccccCCCCCccchHH
Q 011116 437 GSN---ITEAEIMDFIAKQVAPY-KKIRRVAFI--NSIPKSTAGKILRRE 480 (493)
Q Consensus 437 ~~~---~~~~~l~~~l~~~l~~~-~~p~~~~~~--~~lP~t~~GK~~r~~ 480 (493)
+.. .+.+++.++++++|+.+ .+|..+.++ ++||+|+ ||++|..
T Consensus 384 ~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 384 ETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred CccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 643 34578999999999888 588888888 5999999 9999864
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=7.7e-32 Score=262.38 Aligned_cols=242 Identities=17% Similarity=0.192 Sum_probs=183.9
Q ss_pred CCCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecCh-hHHHHHHHHHHHHhcCC
Q 011116 127 TVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPM-FHVFGFFMLVRAASKGE 205 (493)
Q Consensus 127 ~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl-~~~~g~~~~~~~l~~G~ 205 (493)
...++++++++|||||||.||+|.++|+++..........+.. .++.+++++++..|+ +|..++...+.++..|+
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~----~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~ 162 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQH----RPGRPSGNTLAAIPTGPHIVGAINKERALRLGG 162 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTT----STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHh----hCCCCcceEEEecCCCchhhhHHHHHHHHHcCC
Confidence 3467899999999999999999999999999887755433322 356889999999999 99999987778899999
Q ss_pred eEEEecCCCHH-----------------------HHHHHHHhcCeeecccChHHHHHHHhcccCCCCCCCCeeEEEecCC
Q 011116 206 TLVFMERFDFE-----------------------KMLKAVENYRVTYMPVSPPLIVAFINSKLTDKYDLSSLQLLGCGGA 262 (493)
Q Consensus 206 ~~~~~~~~~~~-----------------------~~~~~l~~~~~t~l~~~P~~~~~l~~~~~~~~~~l~~lr~v~~~Ge 262 (493)
+++...+++. .+++.++++++|++.++|+++..|++........++++|.+++|||
T Consensus 163 -~v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe 241 (369)
T 3hgu_A 163 -MFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGT 241 (369)
T ss_dssp -CEECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESS
T ss_pred -EEECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCc
Confidence 6666666776 8888999999999999999999998875433345678999999999
Q ss_pred CCCHHHHHHHH-HhCCCCceeccccccccCCccccccCCCCCCCCCccccc------cCCceEEEEcCCCCccCCCCCce
Q 011116 263 PLGKEVTLKFK-EKFPNVEIRQGYGLTETGGAGSRVIGPDEAERHGSVGRL------AELMEAKIVDPATGEALPPGQKG 335 (493)
Q Consensus 263 ~~~~~~~~~~~-~~~~~~~v~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p------~~~~~~~i~d~~~~~~~~~g~~G 335 (493)
++++++.++++ +.||++++++.||+||+++++..+. ..+.|+| .++++++|+|++++++++.|+.|
T Consensus 242 ~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~-------~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~G 314 (369)
T 3hgu_A 242 ELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLL-------ITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERG 314 (369)
T ss_dssp CCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECC-------BCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEE
T ss_pred cCCHHHHHHHHHHhCCCcEEEcccCchhhhcceeccc-------cccCCCcccccCCCCCeEEEEECCCCCcCCCCCCce
Confidence 99999999999 9999999999999999986654311 1147777 99999999997799999999999
Q ss_pred EEEEeCccccccccCCcccccccccCCCeeeccceEEEcCC--C-------cEEEEcccCCeEEeCce
Q 011116 336 ELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDSN--G-------FLFIVDRLKELIKYKAY 394 (493)
Q Consensus 336 el~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~~--g-------~~~~~GR~~d~i~~~G~ 394 (493)
||++++..... + -..|+|||++.+.+. | .+..++|.++..++.|.
T Consensus 315 El~vt~l~~~~------------~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 315 NVIVTHLSPWA------------F--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEEEETTE------------E--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEEEEcCccc------------c--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 99999642211 1 124899999988553 2 34566777777777664
No 37
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.56 E-value=6.6e-15 Score=115.15 Aligned_cols=95 Identities=20% Similarity=0.253 Sum_probs=72.7
Q ss_pred cccCCeEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCC----CHHHHHHHHHhcCC-CCC
Q 011116 383 DRLKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNI----TEAEIMDFIAKQVA-PYK 457 (493)
Q Consensus 383 GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~l~~~l~-~~~ 457 (493)
||.+|+|+++|.+++|.+||++|.++|+|.++++++++++.+++.+++++++ ++... +.+++.+.+++++. .+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999998888888777778889999998 65322 33455555555543 234
Q ss_pred CcceEEEec--cccCCCCCccchH
Q 011116 458 KIRRVAFIN--SIPKSTAGKILRR 479 (493)
Q Consensus 458 ~p~~~~~~~--~lP~t~~GK~~r~ 479 (493)
.+..+.+++ +||+| +||+.|.
T Consensus 80 ~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 80 VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp SCCEEEEECTTCSCCC----CCCE
T ss_pred CceEEEEECCCCccCC-CCceEEE
Confidence 445788887 99999 9999874
No 38
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.55 E-value=1.1e-14 Score=114.13 Aligned_cols=95 Identities=20% Similarity=0.250 Sum_probs=73.1
Q ss_pred cccCCeEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCCH---HHHHHHHHhcCCC-CCC
Q 011116 383 DRLKELIKYKAYQVPPVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITE---AEIMDFIAKQVAP-YKK 458 (493)
Q Consensus 383 GR~~d~i~~~G~~i~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~-~~~ 458 (493)
.|.||||+++|.+|+|.+||++|.++|+|.++++++.+++.+++.+.++++..++...+. +++.+.+++++.. +.+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 489999999999999999999999999999999999999888999999999887755543 3444455544432 234
Q ss_pred cceEEEe--ccccCCCCCccch
Q 011116 459 IRRVAFI--NSIPKSTAGKILR 478 (493)
Q Consensus 459 p~~~~~~--~~lP~t~~GK~~r 478 (493)
+..+.++ ++||+| +||+.|
T Consensus 81 ~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 81 TPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp CCEEEEECTTCSCCC----CCC
T ss_pred ccceEEEcCCeecCC-CCCcch
Confidence 4456666 589998 799987
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.99 E-value=2.5e-09 Score=106.79 Aligned_cols=134 Identities=13% Similarity=0.169 Sum_probs=86.0
Q ss_pred CCC---eeEEEecCCCCCHHHHHHHHHhCCCCcee-ccccccccCCccccccCCCCCCCCCcccc-ccC-CceEEEEcCC
Q 011116 251 LSS---LQLLGCGGAPLGKEVTLKFKEKFPNVEIR-QGYGLTETGGAGSRVIGPDEAERHGSVGR-LAE-LMEAKIVDPA 324 (493)
Q Consensus 251 l~~---lr~v~~~Ge~~~~~~~~~~~~~~~~~~v~-~~yG~tE~g~~~~~~~~~~~~~~~~~~g~-p~~-~~~~~i~d~~ 324 (493)
+++ +.+++.||- ..-...++..+++.++. ..|++||+ .++.. ..+ ...+...+. .++ ....+.++.+
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~-~~p--~~~~~~~~~~L~~~~~ffEFip~~ 368 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET-TFGIN-LDP--LCKPEDVSYTFMPNMSYFEFIPMD 368 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC-EEEEC-SCT--TSCGGGCCEEECTTSSEEEEEECS
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc-eeeec-cCC--CCCcccCceeecCCcEEEEEEecc
Confidence 466 555565663 33334455555677777 88999996 23322 111 111111222 222 2555666533
Q ss_pred CC--------ccCCCCCceEEEEeCccccccccCCcccccccccCCCeeeccceEEEcC----CCcEEEEcccCCeEEeC
Q 011116 325 TG--------EALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDLCYFDS----NGFLFIVDRLKELIKYK 392 (493)
Q Consensus 325 ~~--------~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~~~~~~----~g~~~~~GR~~d~i~~~ 392 (493)
+. ..+..|+.+||++++.+ |.| -|++||+++++. ...+.|.||.++++++.
T Consensus 369 ~~~~~~~v~l~eVe~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~ 431 (581)
T 4eql_A 369 GGDKNDVVDLEDVKLGCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSID 431 (581)
T ss_dssp TTCCSSCEEGGGCCTTCEEEEEEECSS---SCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEECSS
T ss_pred ccCCCcEeCHHHcCCCceEEEEEeecc---cee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEee
Confidence 21 23568999999999541 111 299999999975 34789999999999999
Q ss_pred ceeeChHHHHHHHhcC
Q 011116 393 AYQVPPVELEHLLHSN 408 (493)
Q Consensus 393 G~~i~~~~ie~~l~~~ 408 (493)
|++++..+||++|.+.
T Consensus 432 Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 432 SDKTNEEDLFKAVSQA 447 (581)
T ss_dssp SCCEEHHHHHHHHHHC
T ss_pred eeECCHHHHHHHHHHH
Confidence 9999999999999853
No 40
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.97 E-value=9.3e-09 Score=102.46 Aligned_cols=179 Identities=11% Similarity=0.051 Sum_probs=103.6
Q ss_pred ChHHHHHHHhcccCC-------CCCCCCeeE--EEecCCCCCHHHHHHHHHhCCCCcee-ccccccccCCccccccCCCC
Q 011116 233 SPPLIVAFINSKLTD-------KYDLSSLQL--LGCGGAPLGKEVTLKFKEKFPNVEIR-QGYGLTETGGAGSRVIGPDE 302 (493)
Q Consensus 233 ~P~~~~~l~~~~~~~-------~~~l~~lr~--v~~~Ge~~~~~~~~~~~~~~~~~~v~-~~yG~tE~g~~~~~~~~~~~ 302 (493)
.|..+..+.+..... ..-+++++. ++.+|.. ..-...++..+++.++. ..|++||+ .++.. .. .
T Consensus 276 ~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~-~~--p 349 (581)
T 4epl_A 276 NPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAAN-VT--P 349 (581)
T ss_dssp CHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTE-EEEEC-CC--T
T ss_pred CHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccce-eeeee-cC--C
Confidence 345555565544322 112566753 3444432 22234555555677777 88999996 23332 11 1
Q ss_pred CCCCCcccc-ccCC-ceEEEEcCCCC----------ccCCCCCceEEEEeCccccccccCCcccccccccCCCeeeccce
Q 011116 303 AERHGSVGR-LAEL-MEAKIVDPATG----------EALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWLKTGDL 370 (493)
Q Consensus 303 ~~~~~~~g~-p~~~-~~~~i~d~~~~----------~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TgD~ 370 (493)
...++..+. .+++ ...+.++.++. ..+..|+.+||++++.. |.+ -|++||.
T Consensus 350 ~~~~~~~~~~L~p~~~ffEFiP~~~~~~~~~~~v~l~eve~G~~YelviTt~~---GL~--------------RYr~GD~ 412 (581)
T 4epl_A 350 RLSPEEATFAVIPNLGYFEFLPVSETGEGEEKPVGLTQVKIGEEYEVVITNYA---GLY--------------RYRLGDV 412 (581)
T ss_dssp TSCTTTCCEEECTTSCEEEEEEC-------CCCEEGGGCCTTCEEEEEEESTT---SCS--------------SEEEEEE
T ss_pred CCCccccceeecCCcEEEEEEecccccCCCCceeeHHHcCCCCeEEEEEeecc---cee--------------eEEcCCE
Confidence 112222222 2232 44455542221 24678999999999541 211 2999999
Q ss_pred EEEcCC----CcEEEEcccCCeEEeCceeeChHHHHHHHhcC--------CCcceEEEEeeeCCCCCeeEEEEEEeC
Q 011116 371 CYFDSN----GFLFIVDRLKELIKYKAYQVPPVELEHLLHSN--------PEIADAAVIPYPDEEAGQIPMAFVVRK 435 (493)
Q Consensus 371 ~~~~~~----g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~~--------~~v~~~~v~~~~~~~~~~~~~~~v~~~ 435 (493)
++++.. ..+.|.||.++++++.|++++..+||.++.+. -.+.|..++.......+. -+.++++.
T Consensus 413 v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~h-yv~~wE~~ 488 (581)
T 4epl_A 413 VKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGH-YAIFWEIS 488 (581)
T ss_dssp EEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCE-EEEEEEES
T ss_pred EEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCc-EEEEEeec
Confidence 999642 47899999999999999999999999999751 246676666533322222 23445664
No 41
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.94 E-value=2.8e-09 Score=106.66 Aligned_cols=151 Identities=13% Similarity=0.158 Sum_probs=92.8
Q ss_pred ChHHHHHHHhcccCCC------CCCCCee---EEEecCCCCCHHHHHHHHHhCCCCcee-ccccccccCCccccccCCCC
Q 011116 233 SPPLIVAFINSKLTDK------YDLSSLQ---LLGCGGAPLGKEVTLKFKEKFPNVEIR-QGYGLTETGGAGSRVIGPDE 302 (493)
Q Consensus 233 ~P~~~~~l~~~~~~~~------~~l~~lr---~v~~~Ge~~~~~~~~~~~~~~~~~~v~-~~yG~tE~g~~~~~~~~~~~ 302 (493)
.|..+..+.+...... .-++++| +++.||- ..-...++..+++.++. ..|++||+ .++.. ..+
T Consensus 277 ~~~la~~l~~~~~~~~~~g~i~~lWPnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~-~~p-- 349 (609)
T 4b2g_A 277 DPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSEC-YFGLN-LNP-- 349 (609)
T ss_dssp CHHHHHHHHHHHTSSCCTTTHHHHSTTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSC-EEEEC-SCT--
T ss_pred CHHHHHHHHHHhCCCccccCHHHhCCCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCcccccce-eeeee-cCC--
Confidence 3455666665443321 1256644 4555552 22234455555567766 78999996 23332 111
Q ss_pred CCCCCcccc-ccC-CceEEEEcCCCC---------------ccCCCCCceEEEEeCccccccccCCcccccccccCCCee
Q 011116 303 AERHGSVGR-LAE-LMEAKIVDPATG---------------EALPPGQKGELWLRGPTIMKGYVGDDKATSETVHSEGWL 365 (493)
Q Consensus 303 ~~~~~~~g~-p~~-~~~~~i~d~~~~---------------~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~ 365 (493)
...+...+. .++ ....+.++.++. ..+..|+.+||+++.. .|++ -|
T Consensus 350 ~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~---~GL~--------------RY 412 (609)
T 4b2g_A 350 MSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTY---AGLY--------------RY 412 (609)
T ss_dssp TSCGGGCCEEECTTSCEEEEEEGGGTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECT---TSCC--------------SE
T ss_pred CCCcccCceeecCCcEEEEEEeccccccccccCCCCccccHhHcCCCCeEEEehhhh---hhhh--------------he
Confidence 111111222 222 345555543322 2467899999999853 1222 19
Q ss_pred eccceEEEcC----CCcEEEEcccCCeEEeCceeeChHHHHHHHhc
Q 011116 366 KTGDLCYFDS----NGFLFIVDRLKELIKYKAYQVPPVELEHLLHS 407 (493)
Q Consensus 366 ~TgD~~~~~~----~g~~~~~GR~~d~i~~~G~~i~~~~ie~~l~~ 407 (493)
++||+++++. ...+.|.||.++++++.|+++++.+||++|.+
T Consensus 413 r~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 413 RVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN 458 (609)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred ecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence 9999999974 35899999999999999999999999999984
No 42
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=75.11 E-value=26 Score=34.28 Aligned_cols=97 Identities=11% Similarity=0.042 Sum_probs=74.1
Q ss_pred CCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEE
Q 011116 129 YQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLV 208 (493)
Q Consensus 129 ~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~ 208 (493)
.++.++++.- ...+|...+...+..+...+.. .|++++|++...++-... ....+++++..|+..+
T Consensus 19 ~pd~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~----~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~v 84 (509)
T 3ivr_A 19 FPDRTAFMVD---------GVRLTHRDYLARAERLASGLLR----DGVHTGDRVAILSQNCSE-MIELIGAVALIGAILL 84 (509)
T ss_dssp STTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHH----TTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEE
T ss_pred CCCceEEEEC---------CcEEcHHHHHHHHHHHHHHHHH----cCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEE
Confidence 4677776641 2468999988777776666543 367899999999887543 3467888899999999
Q ss_pred Eec-CCCHHHHHHHHHhcCeeecccChHHHHH
Q 011116 209 FME-RFDFEKMLKAVENYRVTYMPVSPPLIVA 239 (493)
Q Consensus 209 ~~~-~~~~~~~~~~l~~~~~t~l~~~P~~~~~ 239 (493)
..+ ..+.+++...++..++.+++..+.....
T Consensus 85 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 85 PVNYRLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp ECCTTSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred ecCCCCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 884 5688999999999999999988776554
No 43
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=73.59 E-value=22 Score=35.18 Aligned_cols=100 Identities=13% Similarity=0.044 Sum_probs=73.6
Q ss_pred CCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeE
Q 011116 128 VYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETL 207 (493)
Q Consensus 128 ~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~ 207 (493)
..++.++++....| -.+|...+...+..+...+.. .|++++|++...++-... ....+++++..|+..
T Consensus 34 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~lA~~L~~----~Gv~~gd~V~i~~~~~~~-~~~~~la~~~~Gav~ 101 (536)
T 3ni2_A 34 NHSSKPCLINGANG-------DVYTYADVELTARRVASGLNK----IGIQQGDVIMLFLPSSPE-FVLAFLGASHRGAII 101 (536)
T ss_dssp GSTTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHH----TTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEE
T ss_pred cCCCceEEEECCCC-------CEEEHHHHHHHHHHHHHHHHH----cCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCEE
Confidence 45677777653222 357888887777766666543 367899999999887543 346788889999998
Q ss_pred EEec-CCCHHHHHHHHHhcCeeecccChHHHHH
Q 011116 208 VFME-RFDFEKMLKAVENYRVTYMPVSPPLIVA 239 (493)
Q Consensus 208 ~~~~-~~~~~~~~~~l~~~~~t~l~~~P~~~~~ 239 (493)
+..+ ....+++...++..++.+++........
T Consensus 102 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 134 (536)
T 3ni2_A 102 TAANPFSTPAELAKHAKASRAKLLITQACYYEK 134 (536)
T ss_dssp EECCTTCCHHHHHHHHHHHTEEEEEECGGGTHH
T ss_pred eccCCCCCHHHHHHHHHhcCCEEEEEChHHHHH
Confidence 8874 5688999999999999999887654433
No 44
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=70.60 E-value=32 Score=34.07 Aligned_cols=106 Identities=10% Similarity=0.006 Sum_probs=75.2
Q ss_pred CCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEE
Q 011116 129 YQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLV 208 (493)
Q Consensus 129 ~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~ 208 (493)
.++.++++....+..+ -..-.+|...+...+..+...+.. .|++++|++...++-... ....+++++..|+..+
T Consensus 32 ~p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~----~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~v 105 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGISR----KGVRKGEHVGVCIPNSID-YVMTIYALWRVAATPV 105 (549)
T ss_dssp HTTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHHH----TTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEE
T ss_pred CCCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHHH----cCCCCCCEEEEECCCCHH-HHHHHHHHHHhCCEEE
Confidence 4667777655322111 112457888887777766666543 367899999999887543 3467888899999988
Q ss_pred Eec-CCCHHHHHHHHHhcCeeecccChHHHHHH
Q 011116 209 FME-RFDFEKMLKAVENYRVTYMPVSPPLIVAF 240 (493)
Q Consensus 209 ~~~-~~~~~~~~~~l~~~~~t~l~~~P~~~~~l 240 (493)
..+ ....+++...++..+++++++.+.....+
T Consensus 106 pl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~ 138 (549)
T 3g7s_A 106 PINPMYKSFELEHILNDSEATTLVVHSMLYENF 138 (549)
T ss_dssp ECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred ccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 884 56789999999999999988887655444
No 45
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=69.04 E-value=15 Score=35.31 Aligned_cols=64 Identities=16% Similarity=0.068 Sum_probs=50.9
Q ss_pred hhCCCCCCCEEEEECCCCCCc--HHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCC
Q 011116 25 KRDSLCRKTTSLTSSPLPPST--SPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHT 90 (493)
Q Consensus 25 ~~~gl~~gd~V~l~~~~~~~~--~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~ 90 (493)
...|++++|++...++ .+.. .+...++++..|+.+++++. ...+.+...+++.++.+++..+..
T Consensus 127 ~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~Ps~ 192 (437)
T 2y27_A 127 RAAGARRGDKVHVSYG-YGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDIIMVTPSY 192 (437)
T ss_dssp HHTTCCTTCEEEECSC-CSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEEEECHHH
T ss_pred HHcCCCCCCEEEEccc-ccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEEEECHHH
Confidence 4679999999999988 6433 23456788899999987765 478899999999999999887654
No 46
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=68.18 E-value=34 Score=33.79 Aligned_cols=102 Identities=8% Similarity=-0.056 Sum_probs=73.3
Q ss_pred CCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEE
Q 011116 129 YQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLV 208 (493)
Q Consensus 129 ~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~ 208 (493)
.++.++++....+ ....+|...+...+..+...+.. .|+.++|++...++-... ....++.++..|+..+
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~----~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~v 100 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRA----LGVGVGDRVATLGFNHFR-HLEAYFAVPGMGAVLH 100 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHH----TTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEE
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHH----cCCCCCCEEEEEcCCcHH-HHHHHHHHHhcCcEEE
Confidence 3566666543211 23467888887777666665543 367899999999886542 3467788899999988
Q ss_pred Eec-CCCHHHHHHHHHhcCeeecccChHHHHHH
Q 011116 209 FME-RFDFEKMLKAVENYRVTYMPVSPPLIVAF 240 (493)
Q Consensus 209 ~~~-~~~~~~~~~~l~~~~~t~l~~~P~~~~~l 240 (493)
..+ ....+++...++..++.++++.+.....+
T Consensus 101 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 101 TANPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred ecCcccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 874 56789999999999999999887655443
No 47
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=67.90 E-value=15 Score=35.24 Aligned_cols=64 Identities=14% Similarity=0.069 Sum_probs=51.0
Q ss_pred hhCCCCCCCEEEEECCCCCCc--HHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCC
Q 011116 25 KRDSLCRKTTSLTSSPLPPST--SPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHT 90 (493)
Q Consensus 25 ~~~gl~~gd~V~l~~~~~~~~--~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~ 90 (493)
...|++++|++...++ -+.. .+...++++..|+.+++++. ...+.+...+++.++.+++..+..
T Consensus 129 ~~~~~~~~d~~l~~~~-~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~Ps~ 194 (443)
T 2y4o_A 129 RAAGGRPGDTLHNAFG-YGLFTGGLGIHYGAERLGCMVVPMSG-GQTEKQVQLIRDFEPKIILVTPSY 194 (443)
T ss_dssp HHTTCCTTCEEEECSC-CSSSHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHCCSEEEECHHH
T ss_pred HHcCCCCCCEEEEecc-CcccccHHHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHhCCcEEEECHHH
Confidence 4689999999999988 6433 24456788889999888765 478889999999999999887653
No 48
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=65.70 E-value=9.7 Score=37.93 Aligned_cols=87 Identities=10% Similarity=0.004 Sum_probs=66.3
Q ss_pred eecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEEEec-CCCHHHHHHHHHhcCe
Q 011116 149 VLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFME-RFDFEKMLKAVENYRV 227 (493)
Q Consensus 149 v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~l~~~~~ 227 (493)
..+|...+...+..+...+.. .|++++|++...++-... ....+++++..|+..+..+ ....+++...++..++
T Consensus 49 ~~~Ty~el~~~~~~lA~~L~~----~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~ 123 (550)
T 3rix_A 49 VNITYAEYFEMSVRLAEAMKR----YGLNTNHRIVVCSENSLQ-FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQP 123 (550)
T ss_dssp CEEEHHHHHHHHHHHHHHHHH----HTCCTTCEEEEECSSCTT-THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCC
T ss_pred cEeEHHHHHHHHHHHHHHHHH----hCCCCCCEEEEEcCCccc-HHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCC
Confidence 357888887777666655533 367899999999886542 3467788899999988874 5788999999999999
Q ss_pred eecccChHHHHHH
Q 011116 228 TYMPVSPPLIVAF 240 (493)
Q Consensus 228 t~l~~~P~~~~~l 240 (493)
+++++.......+
T Consensus 124 ~~vi~~~~~~~~~ 136 (550)
T 3rix_A 124 TVVFVSKKGLQKI 136 (550)
T ss_dssp SEEEECGGGHHHH
T ss_pred eEEEEcHHHHHHH
Confidence 9998887655544
No 49
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=63.87 E-value=45 Score=32.56 Aligned_cols=100 Identities=12% Similarity=0.117 Sum_probs=71.2
Q ss_pred CCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEE
Q 011116 129 YQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLV 208 (493)
Q Consensus 129 ~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~ 208 (493)
.++.++++... . +..+|...+...+..+...+.. .|.+++|++...++-... ....++.++..|+..+
T Consensus 15 ~p~~~a~~~~~---~----~~~~Ty~el~~~~~~~A~~L~~----~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~v 82 (504)
T 1t5h_X 15 APDHCALAVPA---R----GLRLTHAELRARVEAVAARLHA----DGLRPQQRVAVVAPNSAD-VVIAILALHRLGAVPA 82 (504)
T ss_dssp CTTSEEEEETT---T----TEEEEHHHHHHHHHHHHHHHHH----TTCCTTCEEEEECCSCHH-HHHHHHHHHHHTCEEE
T ss_pred CCCceEEEEcC---C----CceeEHHHHHHHHHHHHHHHHH----cCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCcEEE
Confidence 45666666432 1 2468898888777776666543 367899999999887643 2467788899999988
Q ss_pred Eec-CCCHHHHHHHHHhcCeeeccc--ChHHHHHH
Q 011116 209 FME-RFDFEKMLKAVENYRVTYMPV--SPPLIVAF 240 (493)
Q Consensus 209 ~~~-~~~~~~~~~~l~~~~~t~l~~--~P~~~~~l 240 (493)
..+ ....+++...+++.+++.++. .+.....+
T Consensus 83 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 83 LLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp EECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred ecCCccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 774 567899999999999998887 55444433
No 50
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=62.13 E-value=50 Score=32.32 Aligned_cols=97 Identities=13% Similarity=0.015 Sum_probs=71.4
Q ss_pred CCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeE
Q 011116 128 VYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETL 207 (493)
Q Consensus 128 ~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~ 207 (493)
..++.++++.. + ....+|...+...+..+...+.. .|+.++|++...++-.. -....++.++..|+..
T Consensus 28 ~~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~----~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~ 95 (517)
T 3r44_A 28 VSPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTA----LGIAKGDRVALLMPNSV-EFCCLFYGAAKLGAVA 95 (517)
T ss_dssp HSTTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHH----TTCCTTCEEEEECCSSH-HHHHHHHHHHHHTCEE
T ss_pred hCCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHH----cCCCCcCEEEEEcCCCH-HHHHHHHHHHHhCcEE
Confidence 34677777653 1 12468888887777766666543 36789999999998654 2346788899999999
Q ss_pred EEec-CCCHHHHHHHHHhcCeeecccChHH
Q 011116 208 VFME-RFDFEKMLKAVENYRVTYMPVSPPL 236 (493)
Q Consensus 208 ~~~~-~~~~~~~~~~l~~~~~t~l~~~P~~ 236 (493)
+..+ ....+++...++..++.++++....
T Consensus 96 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~ 125 (517)
T 3r44_A 96 VPINTRLAAPEVSFILSDSGSKVVIYGAPS 125 (517)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECGGG
T ss_pred EecCcccCHHHHHHHHHhcCceEEEECCch
Confidence 9884 5678999999999999988876544
No 51
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=61.29 E-value=15 Score=35.16 Aligned_cols=68 Identities=15% Similarity=0.048 Sum_probs=51.8
Q ss_pred HHHHHhhCCCCCCCEEEEECCCCCCc--HHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCC
Q 011116 20 SHALSKRDSLCRKTTSLTSSPLPPST--SPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHT 90 (493)
Q Consensus 20 A~~L~~~~gl~~gd~V~l~~~~~~~~--~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~ 90 (493)
++.+ ...|+.++|++...++ -+.. .+..+++++..|+.+++.+. ..++.+...+++.++.+++..+..
T Consensus 119 ~~~~-~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~ 188 (436)
T 3qov_A 119 ARCL-YMVGIRKTDVFQNSSG-YGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTALHAIPSY 188 (436)
T ss_dssp HHHH-HHTTCCTTSEEEECSC-CTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEEECCHHH
T ss_pred HHHH-HHcCCCCCCEEEECcc-cccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEEEECHHH
Confidence 3344 5679999999999987 5422 33456788899999887764 477889999999999998877643
No 52
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=60.66 E-value=62 Score=32.21 Aligned_cols=103 Identities=11% Similarity=0.093 Sum_probs=74.1
Q ss_pred CCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCCC-CCCCCcEEEEecChhHHHHHHHHHHHHhcCCeE
Q 011116 129 YQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNE-GPPPHPVSFFTLPMFHVFGFFMLVRAASKGETL 207 (493)
Q Consensus 129 ~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~ 207 (493)
.++.++++.... .| ....+|...+...+..+...+.. . |++++|++...++-... ....+++++..|+..
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~----~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Ga~~ 126 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSG----ACGLQRGDRVAVVLPRVPE-WWLVILGCIRAGLIF 126 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHT----TTCCCTTCEEEEECCSCHH-HHHHHHHHHHHTCEE
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHH----ccCCCCCCEEEEEcCCCHH-HHHHHHHHHHcCeEE
Confidence 567777765421 12 12468898888777776666643 2 67899999999886643 246778889999998
Q ss_pred EEec-CCCHHHHHHHHHhcCeeecccChHHHHHH
Q 011116 208 VFME-RFDFEKMLKAVENYRVTYMPVSPPLIVAF 240 (493)
Q Consensus 208 ~~~~-~~~~~~~~~~l~~~~~t~l~~~P~~~~~l 240 (493)
+..+ ....+++...++..++.++++.+.....+
T Consensus 127 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 127 MPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp EECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred EecCCCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 8874 46789999999999999888776654443
No 53
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=60.52 E-value=51 Score=33.59 Aligned_cols=98 Identities=11% Similarity=0.146 Sum_probs=72.3
Q ss_pred CCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcc-cCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeE
Q 011116 129 YQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTE-ETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETL 207 (493)
Q Consensus 129 ~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~ 207 (493)
.++.++++.... .+| ....+|...+...+..+...+. . .|.+++|++...+|.... ....++.++..|+..
T Consensus 95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~~----~Gv~~Gd~V~i~~~~~~e-~v~a~lA~~~~Gav~ 166 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTYS----MGVRKGDTVAVYMPMVPE-AIITLLAISRIGAIH 166 (663)
T ss_dssp CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHHT----SCCCTTCEEEECCCSSHH-HHHHHHHHHHTTCEE
T ss_pred CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHh----cCCCCCCEEEEEcCCCHH-HHHHHHHHHHcCCEE
Confidence 467777765432 122 2346889888887777766663 2 367899999999997653 346788899999998
Q ss_pred EEe-cCCCHHHHHHHHHhcCeeecccCh
Q 011116 208 VFM-ERFDFEKMLKAVENYRVTYMPVSP 234 (493)
Q Consensus 208 ~~~-~~~~~~~~~~~l~~~~~t~l~~~P 234 (493)
+.+ +.+..+.+...++..++.++++..
T Consensus 167 vpl~~~~~~~~l~~~l~~~~~~~li~~~ 194 (663)
T 1ry2_A 167 SVVFAGFSSNSLRDRINDGDSKVVITTD 194 (663)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred EeeCCCCCHHHHHHHHHhcCCeEEEEcc
Confidence 877 567899999999999998887754
No 54
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=59.53 E-value=55 Score=32.52 Aligned_cols=96 Identities=9% Similarity=0.059 Sum_probs=70.8
Q ss_pred CCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEE
Q 011116 129 YQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLV 208 (493)
Q Consensus 129 ~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~ 208 (493)
.++.++++.. .-.+|...+...+..+...+.. .|++++|++...++-... ....+++++..|+..+
T Consensus 52 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~----~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~v 117 (563)
T 1amu_A 52 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFIE----KGIGKDTLVGIMMEKSID-LFIGILAVLKAGGAYV 117 (563)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHH----TTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEE
T ss_pred CCCCeEEEeC---------CceecHHHHHHHHHHHHHHHHH----cCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEE
Confidence 4566666531 1357888887777666655533 367899999999886643 3467788899999988
Q ss_pred Eec-CCCHHHHHHHHHhcCeeecccChHHHH
Q 011116 209 FME-RFDFEKMLKAVENYRVTYMPVSPPLIV 238 (493)
Q Consensus 209 ~~~-~~~~~~~~~~l~~~~~t~l~~~P~~~~ 238 (493)
..+ ....+++...++..++.+++..+....
T Consensus 118 pl~~~~~~~~l~~il~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 118 PIDIEYPKERIQYILDDSQARMLLTQKHLVH 148 (563)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred EeCCCCcHHHHHHHHHhcCCCEEEEcCchhh
Confidence 874 567899999999999999988876543
No 55
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=59.30 E-value=49 Score=31.86 Aligned_cols=107 Identities=10% Similarity=0.040 Sum_probs=77.4
Q ss_pred CCCCeEEEEccC--CCCCCccceecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCe
Q 011116 129 YQSDPAAILYSS--GTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGET 206 (493)
Q Consensus 129 ~~~~~~~i~~TS--GTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~ 206 (493)
.++.++++.... +.+| ....+|...+...+..+...+.. .|. ++|++...++-... ....++.++..|+.
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~----~g~-~gd~V~i~~~n~~e-~~~~~lA~~~~G~v 108 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSR----CGS-TGDRVVISAPQGLE-YVVAFLGALQAGRI 108 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTT----SSC-TTCEEEEECCSSHH-HHHHHHHHHHTTCE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHh----cCC-CCCEEEEEcCCcHH-HHHHHHHHHHhCcE
Confidence 467777766542 2222 23578999998888887777744 343 89999988886643 34677888999999
Q ss_pred EEEecC----CCHHHHHHHHHhcCeeecccChHHHHHHHhc
Q 011116 207 LVFMER----FDFEKMLKAVENYRVTYMPVSPPLIVAFINS 243 (493)
Q Consensus 207 ~~~~~~----~~~~~~~~~l~~~~~t~l~~~P~~~~~l~~~ 243 (493)
.+..+. ...+++...++..++.+++..+.....+...
T Consensus 109 ~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 109 AVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp EEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred EEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 887743 4568899999999999999988776665543
No 56
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=58.72 E-value=42 Score=33.56 Aligned_cols=98 Identities=9% Similarity=0.016 Sum_probs=72.0
Q ss_pred CCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeE
Q 011116 128 VYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETL 207 (493)
Q Consensus 128 ~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~ 207 (493)
..++.++++..... | ....+|...+......+...+.. .|++++|++...++-... ....+++++..|+..
T Consensus 68 ~~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~----~Gv~~Gd~V~l~~~~~~e-~~~~~lA~~~~Gav~ 138 (580)
T 3etc_A 68 DSPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVK----HGIGKGDYVMLTLKSRYD-FWYCMLGLHKLGAIA 138 (580)
T ss_dssp HCTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHH----TTCCTTCEEEEECTTCTH-HHHHHHHHHHHTCEE
T ss_pred hCCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHH----cCCCCCCEEEEEcCCCHH-HHHHHHHHHhCCEEE
Confidence 35778887765321 2 23568888887777766666543 367899999999987643 246788889999998
Q ss_pred EEe-cCCCHHHHHHHHHhcCeeecccCh
Q 011116 208 VFM-ERFDFEKMLKAVENYRVTYMPVSP 234 (493)
Q Consensus 208 ~~~-~~~~~~~~~~~l~~~~~t~l~~~P 234 (493)
+.. +....+++...++..++.++++.+
T Consensus 139 vpl~~~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 139 VPATHMLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp EECCTTCCHHHHHHHHHHHTCCEEEEES
T ss_pred EeCCccCCHHHHHHHHHhcCCCEEEEec
Confidence 877 457889999999999999887754
No 57
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=58.30 E-value=54 Score=35.25 Aligned_cols=99 Identities=14% Similarity=0.132 Sum_probs=73.7
Q ss_pred CCCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCe
Q 011116 127 TVYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGET 206 (493)
Q Consensus 127 ~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~ 206 (493)
...++.++++...+| -.+|...+......+...+.. .|++++|++...++-.. -....++.++..|+.
T Consensus 72 ~~~pd~~Al~~~~~~-------~~~TY~eL~~~~~~lA~~L~~----~Gv~~gd~V~i~~~ns~-e~~v~~lA~~~~Ga~ 139 (979)
T 3tsy_A 72 SEFATKPCLINGPTG-------HVYTYSDVHVISRQIAANFHK----LGVNQNDVVMLLLPNCP-EFVLSFLAASFRGAT 139 (979)
T ss_dssp GGTTTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHH----TTCCTTCEEEEECSSCH-HHHHHHHHHHHHTCE
T ss_pred HhCCCCeEEEECCCC-------cEEEHHHHHHHHHHHHHHHHH----cCCCCcCEEEEEeCCCH-HHHHHHHHHHHcCCE
Confidence 345778887653222 357888887777766666543 36789999999998764 334678889999999
Q ss_pred EEEec-CCCHHHHHHHHHhcCeeecccChHHH
Q 011116 207 LVFME-RFDFEKMLKAVENYRVTYMPVSPPLI 237 (493)
Q Consensus 207 ~~~~~-~~~~~~~~~~l~~~~~t~l~~~P~~~ 237 (493)
.+..+ ....+++...++..++.+++..+...
T Consensus 140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 140 ATAANPFFTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp EEEECTTSCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHH
Confidence 98874 57889999999999999988876543
No 58
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=58.02 E-value=14 Score=34.09 Aligned_cols=61 Identities=13% Similarity=0.070 Sum_probs=44.2
Q ss_pred CC-CCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 011116 27 DS-LCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATS 88 (493)
Q Consensus 27 ~g-l~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~ 88 (493)
.| +++|++|.+-.. .+-.-..+-++|...|..++.+-|...+..-...++..++++++++.
T Consensus 65 ~g~l~~g~~vvv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 126 (334)
T 3tbh_A 65 EGKLIPGKSIVVESS-SGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPA 126 (334)
T ss_dssp TTSCCTTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred cCCCCCCCeEEEEeC-CCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 35 589998644445 57777777888888898766665554545556778999999999874
No 59
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=56.15 E-value=32 Score=33.82 Aligned_cols=96 Identities=9% Similarity=-0.061 Sum_probs=69.9
Q ss_pred CCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEE
Q 011116 129 YQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLV 208 (493)
Q Consensus 129 ~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~ 208 (493)
.++.++++.. | ..+|...+...+..+...+.. .|++++|++...++-... ....+++++..|+..+
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~~----~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~v 101 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALRT----LGVHPEERILLVMLDTVA-LPVAFLGALYAGVVPV 101 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHHH----TTCCTTCEEEEECCSSTH-HHHHHHHHHHHTCEEE
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHHH----cCCCCCCEEEEEcCCcHH-HHHHHHHHHHcCceEE
Confidence 4666666532 1 357888887777766665543 367899999999887653 2456788899999988
Q ss_pred Eec-CCCHHHHHHHHHhcCeeecccChHHHH
Q 011116 209 FME-RFDFEKMLKAVENYRVTYMPVSPPLIV 238 (493)
Q Consensus 209 ~~~-~~~~~~~~~~l~~~~~t~l~~~P~~~~ 238 (493)
..+ ..+.+++...+++.++..+++.+....
T Consensus 102 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 132 (529)
T 2v7b_A 102 VANTLLTPADYVYMLTHSHARAVIASGALVQ 132 (529)
T ss_dssp ECCTTCCHHHHHHHHHHHTCSEEEEEGGGHH
T ss_pred ecCcccCHHHHHHHHhccCCeEEEechhhhh
Confidence 774 467899999999999988887765443
No 60
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=55.09 E-value=32 Score=33.59 Aligned_cols=67 Identities=10% Similarity=0.049 Sum_probs=52.1
Q ss_pred HHHhhCCCCCCCEEEEECCCCCCc-HHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCC
Q 011116 22 ALSKRDSLCRKTTSLTSSPLPPST-SPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHT 90 (493)
Q Consensus 22 ~L~~~~gl~~gd~V~l~~~~~~~~-~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~ 90 (493)
.+....++.++|++...+| -.-. .+..+++++..|+.++..+ ...++.+...+++.++..+...+..
T Consensus 194 ~~~~~~~~~~~d~~l~~~p-~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~ 261 (501)
T 3ipl_A 194 GCKESLGFDRDTNWLSVLP-IYHISGLSVLLRAVIEGFTVRIVD-KFNAEQILTMIKNERITHISLVPQT 261 (501)
T ss_dssp HHHHHTCCCTTCEEEECSC-TTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHSCCCEEEECHHH
T ss_pred HHHHhhCCCccCEEEEeCc-HHHHHHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHcCCcEEEchHHH
Confidence 3335679999999999999 5433 3345677888899988765 5789999999999999999887643
No 61
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=54.91 E-value=65 Score=31.99 Aligned_cols=93 Identities=14% Similarity=0.074 Sum_probs=69.5
Q ss_pred CCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEE
Q 011116 129 YQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLV 208 (493)
Q Consensus 129 ~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~ 208 (493)
.++.++++.. .-.+|...+...+..+...+.. .|++++|++...++-... ....++.++..|+..+
T Consensus 88 ~pd~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~----~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~v 153 (570)
T 4gr5_A 88 APDAVALLHE---------ADELTYGALNERANRLAHRLVG----LGVAPGTLVGVHLERGFD-MVVALLAVLKAGGGYT 153 (570)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHH----TTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEE
T ss_pred CCCCeEEECC---------CCcEeHHHHHHHHHHHHHHHHH----cCCCCCCEEEEEeCCCHH-HHHHHHHHHHHCCEEE
Confidence 4667776641 1258888887777776666543 367899999999887653 2467888899999988
Q ss_pred Eec-CCCHHHHHHHHHhcCeeecccChH
Q 011116 209 FME-RFDFEKMLKAVENYRVTYMPVSPP 235 (493)
Q Consensus 209 ~~~-~~~~~~~~~~l~~~~~t~l~~~P~ 235 (493)
..+ ....+++...++..++.++++...
T Consensus 154 pl~~~~~~~~l~~~l~~~~~~~~i~~~~ 181 (570)
T 4gr5_A 154 MLDPQFPVERLALSLEDTGAPLLVTSRP 181 (570)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECTT
T ss_pred EcCCCChHHHHHHHHHhcCCCEEEecch
Confidence 884 567899999999999988877654
No 62
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=54.75 E-value=69 Score=27.15 Aligned_cols=90 Identities=12% Similarity=0.154 Sum_probs=54.7
Q ss_pred cEEEEecC--hhHHHHH-HHHHHHHhcCCeEEEe-cCCCHHHHHHHHHhcCeeeccc------ChHH--HHHHHhcccCC
Q 011116 180 PVSFFTLP--MFHVFGF-FMLVRAASKGETLVFM-ERFDFEKMLKAVENYRVTYMPV------SPPL--IVAFINSKLTD 247 (493)
Q Consensus 180 ~~~~~~~p--l~~~~g~-~~~~~~l~~G~~~~~~-~~~~~~~~~~~l~~~~~t~l~~------~P~~--~~~l~~~~~~~ 247 (493)
.+++..++ -.|..|. .....--..|..++.. ...+++++.+.+.+++++++.+ ++++ +..+++..++.
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~ 172 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE 172 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc
Confidence 34444444 3677776 4444445567777666 4578999999999999986655 2222 34444443332
Q ss_pred CCCCCCeeEEEecCCCCCHHHHHH
Q 011116 248 KYDLSSLQLLGCGGAPLGKEVTLK 271 (493)
Q Consensus 248 ~~~l~~lr~v~~~Ge~~~~~~~~~ 271 (493)
+.. ..+ .+++||.+++++..+.
T Consensus 173 ~~~-~~v-~v~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 173 KLR-DSV-KCMFGGAPVSDKWIEE 194 (215)
T ss_dssp TCG-GGS-EEEEESSSCCHHHHHH
T ss_pred CCC-CCC-EEEEECCCCCHHHHHH
Confidence 211 133 3677999999875543
No 63
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=53.94 E-value=40 Score=32.94 Aligned_cols=81 Identities=7% Similarity=0.048 Sum_probs=63.3
Q ss_pred ecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEEEec-CCCHHHHHHHHHhcCee
Q 011116 150 LLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFME-RFDFEKMLKAVENYRVT 228 (493)
Q Consensus 150 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~l~~~~~t 228 (493)
.+|...+...+..+...+.. .|++++|++...++-... ....++.++..|+..+..+ ..+.+++...++..++.
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~----~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~ 102 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVA----RGLQVGDRVAAQTEKSVE-ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPK 102 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHH----TTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCS
T ss_pred EEEHHHHHHHHHHHHHHHHH----cCCCCCCEEEEECCCCHH-HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCc
Confidence 47888887777766666543 367899999999887642 3467888899999988884 56789999999999999
Q ss_pred ecccChH
Q 011116 229 YMPVSPP 235 (493)
Q Consensus 229 ~l~~~P~ 235 (493)
++++.+.
T Consensus 103 ~vi~~~~ 109 (503)
T 4fuq_A 103 IVVCDPS 109 (503)
T ss_dssp EEEECGG
T ss_pred EEEECch
Confidence 9887764
No 64
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=53.27 E-value=19 Score=33.42 Aligned_cols=63 Identities=10% Similarity=0.100 Sum_probs=47.9
Q ss_pred hhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 011116 25 KRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATS 88 (493)
Q Consensus 25 ~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~ 88 (493)
.+.-+++|++..+-.. .+-.-..+-++|..+|..+..+-|...+..-...++..++++++++.
T Consensus 79 ~~g~l~~g~~~Vv~aS-sGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~ 141 (344)
T 3vc3_A 79 EKNLITPGKTTLIEPT-SGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDP 141 (344)
T ss_dssp HTTCCCTTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HcCCCCCCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC
Confidence 3333688876555666 68888888899999998877666666666667889999999999864
No 65
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=51.80 E-value=63 Score=31.86 Aligned_cols=93 Identities=11% Similarity=0.018 Sum_probs=68.9
Q ss_pred CCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeE
Q 011116 128 VYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETL 207 (493)
Q Consensus 128 ~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~ 207 (493)
..++.++++.- .-.+|...+...+..+...+.. .|++++|++...++-... ....++.++..|+..
T Consensus 42 ~~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~----~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~Gav~ 107 (544)
T 3o83_A 42 SHPHSLAIICG---------ERQLSYIELDRLSTNLATRLAE----KGLGKGDTALVQLPNVAE-FYIVFFALLKAGVVV 107 (544)
T ss_dssp HCTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHH----TTCCTTCEEEECCCSSHH-HHHHHHHHHHHTCEE
T ss_pred hCCCceEEEcC---------CCceeHHHHHHHHHHHHHHHHH----CCCCCCCEEEEECCCCHH-HHHHHHHHHHhCcEE
Confidence 35677777641 2458888887777776666543 367899999998886542 346788889999988
Q ss_pred EEe-cCCCHHHHHHHHHhcCeeecccCh
Q 011116 208 VFM-ERFDFEKMLKAVENYRVTYMPVSP 234 (493)
Q Consensus 208 ~~~-~~~~~~~~~~~l~~~~~t~l~~~P 234 (493)
+.. .....+++...++..++.+++...
T Consensus 108 vpl~~~~~~~~l~~~l~~~~~~~li~~~ 135 (544)
T 3o83_A 108 LNALYSHRQYELNAFIKQIQPKLLIGSR 135 (544)
T ss_dssp EECCTTCCHHHHHHHHHHHCCSEEEEET
T ss_pred ecCCCCCCHHHHHHHHHhcCeeEEEEcc
Confidence 876 456788999999999998887654
No 66
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=51.21 E-value=27 Score=31.93 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=42.8
Q ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 011116 29 LCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATS 88 (493)
Q Consensus 29 l~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~ 88 (493)
+++|++|+.... +-.-..+-++|.+.|..++.+-|...+..-...++..+++++++..
T Consensus 70 l~~~~~vv~aSs--GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 127 (325)
T 3dwg_A 70 LRPGATILEPTS--GNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAA 127 (325)
T ss_dssp CCTTCEEEEECS--SHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECS
T ss_pred CCCCCEEEEeCC--cHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 678888877655 6666777777788898766665554555556788999999999875
No 67
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=51.16 E-value=65 Score=32.72 Aligned_cols=98 Identities=12% Similarity=0.087 Sum_probs=70.2
Q ss_pred CCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEE
Q 011116 129 YQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLV 208 (493)
Q Consensus 129 ~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~ 208 (493)
.++.++++... ..+| ..-.+|...+...+..+...+.. .|.+++|++...+|.... ....++.++..|+..+
T Consensus 89 ~pd~~Al~~~~-~~~~--~~~~lTY~eL~~~v~~lA~~L~~----~Gv~~Gd~V~i~~~~~~e-~vva~lA~~~~Gav~v 160 (652)
T 1pg4_A 89 NGDRTAIIWEG-DDTS--QSKHISYRELHRDVCRFANTLLD----LGIKKGDVVAIYMPMVPE-AAVAMLACARIGAVHS 160 (652)
T ss_dssp HTTSEEEEEEC-SSTT--CEEEEEHHHHHHHHHHHHHHHHH----HTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEE
T ss_pred CCCceEEEEEc-CCCC--ceeEEeHHHHHHHHHHHHHHHHH----cCCCCCCEEEEEeCCCHH-HHHHHHHHHHcCcEEE
Confidence 36677776532 2222 23468888887777666655532 367899999999987653 2467888899999988
Q ss_pred Ee-cCCCHHHHHHHHHhcCeeecccCh
Q 011116 209 FM-ERFDFEKMLKAVENYRVTYMPVSP 234 (493)
Q Consensus 209 ~~-~~~~~~~~~~~l~~~~~t~l~~~P 234 (493)
.+ +.+..+++...++..++.++++..
T Consensus 161 pl~~~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 161 VIFGGFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred ecCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 87 557889999999998888877643
No 68
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=50.10 E-value=31 Score=34.18 Aligned_cols=86 Identities=8% Similarity=-0.059 Sum_probs=64.1
Q ss_pred eecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEEEec-CCCHHHHHHHHHhcCe
Q 011116 149 VLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFME-RFDFEKMLKAVENYRV 227 (493)
Q Consensus 149 v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~l~~~~~ 227 (493)
..+|...+...+..+...+.. .|++++|++...++-... ....+++++..|+..+..+ ....+++...++..++
T Consensus 51 ~~~Ty~el~~~~~~lA~~L~~----~Gv~~gd~V~i~~~n~~e-~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~ 125 (548)
T 2d1s_A 51 VDYSYAEYLEKSCCLGKALQN----YGLVVDGRIALCSENCEE-FFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKP 125 (548)
T ss_dssp CEEEHHHHHHHHHHHHHHHHH----HTCCTTCEEEEECSSCTT-THHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCC
T ss_pred CEeeHHHHHHHHHHHHHHHHH----cCCCCCCEEEEEeCCchh-HHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCC
Confidence 357888887766666555532 367899999999886542 2356788889999988774 5678999999999999
Q ss_pred eecccChHHHHH
Q 011116 228 TYMPVSPPLIVA 239 (493)
Q Consensus 228 t~l~~~P~~~~~ 239 (493)
.++++.+.....
T Consensus 126 ~~vi~~~~~~~~ 137 (548)
T 2d1s_A 126 TIVFSSKKGLDK 137 (548)
T ss_dssp SEEEECTTTHHH
T ss_pred eEEEEcHHHHHH
Confidence 988887655433
No 69
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=48.25 E-value=1.1e+02 Score=30.46 Aligned_cols=104 Identities=10% Similarity=-0.008 Sum_probs=74.6
Q ss_pred CCCCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeE
Q 011116 128 VYQSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETL 207 (493)
Q Consensus 128 ~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~ 207 (493)
..++.++++....+ ..-.+|...+...+..+...+.. .|++++|++...++-... ....+++++..|+..
T Consensus 23 ~~p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~----~gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~ 92 (590)
T 3kxw_A 23 HSPNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQA----EGAKPGDRVLLLFAPGLP-LIQAFLGCLYAGCIA 92 (590)
T ss_dssp HCTTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHHH----TTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEE
T ss_pred hCCCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHHH----cCCCCCCEEEEEcCCchh-HHHHHHHHHHhCcEE
Confidence 35677777654411 23468888888777776666543 367899999999887643 346778899999998
Q ss_pred EEecC-C---CHHHHHHHHHhcCeeecccChHHHHHHH
Q 011116 208 VFMER-F---DFEKMLKAVENYRVTYMPVSPPLIVAFI 241 (493)
Q Consensus 208 ~~~~~-~---~~~~~~~~l~~~~~t~l~~~P~~~~~l~ 241 (493)
+..+. . ..+++...++..++.+++........+.
T Consensus 93 vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 93 VPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp EEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred EEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 88754 2 3467888889999999988887766553
No 70
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=47.64 E-value=57 Score=29.92 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=38.6
Q ss_pred CCCCCCEEEEECCCCCC-c---HHHHHHHHH---HcCCeeccCCC------------CCCHHHHHHHHhhcCCeEEEEcC
Q 011116 28 SLCRKTTSLTSSPLPPS-T---SPVLYFSLL---SLGVVISPANP------------LSSTSEVSHQIQLSKPSIAFATS 88 (493)
Q Consensus 28 gl~~gd~V~l~~~~~~~-~---~~~~~lA~~---~~G~~~v~i~~------------~~~~~~l~~~l~~~~~~~il~~~ 88 (493)
-+++||+|++++| .+. . --..-.|+. ..|..++.-.. ....++|...+..-.+++|++..
T Consensus 8 ~L~~GD~I~ivaP-S~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISP-SCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECS-SSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeC-CCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 4799999999999 554 2 222223332 34777664321 12257777778888889999875
No 71
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=44.66 E-value=34 Score=33.53 Aligned_cols=69 Identities=10% Similarity=-0.002 Sum_probs=53.1
Q ss_pred HHHHhhCCCCCCCEEEEECCCCCCcH-HHHHHHHHHcCCeeccCCCC--CCHHHHHHHHhhcCCeEEEEcCCC
Q 011116 21 HALSKRDSLCRKTTSLTSSPLPPSTS-PVLYFSLLSLGVVISPANPL--SSTSEVSHQIQLSKPSIAFATSHT 90 (493)
Q Consensus 21 ~~L~~~~gl~~gd~V~l~~~~~~~~~-~~~~lA~~~~G~~~v~i~~~--~~~~~l~~~l~~~~~~~il~~~~~ 90 (493)
.++....++.++|++...+| -+.++ +..+++++..|+..+.++.. ..++.+...+++.++.++...+..
T Consensus 174 ~~~~~~~~~~~~d~~l~~~p-~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~ 245 (512)
T 3fce_A 174 KWAVEDFNLQTGQVFLNQAP-FSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSF 245 (512)
T ss_dssp HHHHHHTTCCSSCEEEECSC-TTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHH
T ss_pred HHHHHhcCCCCCCEEEEeCC-ccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHH
Confidence 34435679999999999999 55443 45678888999998877643 567888999999999998877643
No 72
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=44.31 E-value=43 Score=30.20 Aligned_cols=58 Identities=10% Similarity=0.054 Sum_probs=41.2
Q ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 011116 29 LCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATS 88 (493)
Q Consensus 29 l~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~ 88 (493)
+++|++|..... +-.-..+-++|.+.|..++.+-|...+..-...++..+++++++..
T Consensus 58 ~~~g~~vv~~ss--GN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 58 IKPGDVLIEATS--GNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTK 115 (303)
T ss_dssp CCTTCEEEEECS--SHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred CCCCCEEEEECC--cHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 477888877765 5555566667778898766655544444456688899999999875
No 73
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=43.18 E-value=29 Score=31.94 Aligned_cols=59 Identities=3% Similarity=-0.002 Sum_probs=43.2
Q ss_pred hhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEc
Q 011116 25 KRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFAT 87 (493)
Q Consensus 25 ~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~ 87 (493)
++.++++||+|+++.. -+.-.+++++|....|+.++.++. +.+. ..+.+..++..++..
T Consensus 157 ~~~~~~~g~~VlV~Ga-G~~g~~a~~~a~~~~g~~Vi~~~~--~~~r-~~~~~~~Ga~~~i~~ 215 (348)
T 4eez_A 157 KVSGVKPGDWQVIFGA-GGLGNLAIQYAKNVFGAKVIAVDI--NQDK-LNLAKKIGADVTINS 215 (348)
T ss_dssp HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTSCCEEEEEES--CHHH-HHHHHHTTCSEEEEC
T ss_pred cccCCCCCCEEEEEcC-CCccHHHHHHHHHhCCCEEEEEEC--cHHH-hhhhhhcCCeEEEeC
Confidence 6678999999999988 667677777777677877776653 3333 456777888877754
No 74
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=42.62 E-value=39 Score=33.05 Aligned_cols=70 Identities=9% Similarity=0.002 Sum_probs=53.0
Q ss_pred HHHHHhhCCCCCCCEEEEECCCCCCcH-HHHHHHHHHcCCeeccCCCC--CCHHHHHHHHhhcCCeEEEEcCCC
Q 011116 20 SHALSKRDSLCRKTTSLTSSPLPPSTS-PVLYFSLLSLGVVISPANPL--SSTSEVSHQIQLSKPSIAFATSHT 90 (493)
Q Consensus 20 A~~L~~~~gl~~gd~V~l~~~~~~~~~-~~~~lA~~~~G~~~v~i~~~--~~~~~l~~~l~~~~~~~il~~~~~ 90 (493)
+.++....++.++|++...+| -+.++ +..+++++..|+.++.++.. ..++.+...+++.++..+...+..
T Consensus 172 ~~~~~~~~~~~~~d~~l~~~p-~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~ 244 (511)
T 3e7w_A 172 TDWICADFPVSGGKIFLNQAP-FSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSF 244 (511)
T ss_dssp HHHHHHHSTTTTTCEEEECSC-TTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHH
T ss_pred HHHHHHhcCCCccceEEEeCC-ccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHH
Confidence 334435678999999999999 65544 45578889999998876542 467888899999999998887643
No 75
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=42.42 E-value=61 Score=31.67 Aligned_cols=80 Identities=6% Similarity=-0.103 Sum_probs=60.7
Q ss_pred ecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEEEe-cCCCHHHHHHHHHhcCee
Q 011116 150 LLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFM-ERFDFEKMLKAVENYRVT 228 (493)
Q Consensus 150 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~~~-~~~~~~~~~~~l~~~~~t 228 (493)
.+|...+...+..+...+.. .|+.+++++...++-.. -....++.++..|+..+.. +....+++...++..+++
T Consensus 29 ~~Ty~el~~~~~~lA~~L~~----~g~~~gd~V~i~~~n~~-~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~ 103 (521)
T 3l8c_A 29 RRTYGQLKRDSDSIAAFIDS----LALLAKSPVLVFGAQTY-DMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPS 103 (521)
T ss_dssp EEEHHHHHHHHHHHHHHHHH----TCCCTTCCEEEEECSSH-HHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCS
T ss_pred eecHHHHHHHHHHHHHHHHH----cCCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCC
Confidence 47888887777766665543 36789999988888654 2346778889999988877 557889999999999988
Q ss_pred ecccCh
Q 011116 229 YMPVSP 234 (493)
Q Consensus 229 ~l~~~P 234 (493)
.+++..
T Consensus 104 ~ii~~~ 109 (521)
T 3l8c_A 104 LIIAIE 109 (521)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 877653
No 76
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=41.60 E-value=66 Score=22.14 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=33.9
Q ss_pred hHHHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCCHHHHHHHHHhcCCCCC
Q 011116 398 PVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVAPYK 457 (493)
Q Consensus 398 ~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~ 457 (493)
..++++.|.++|+|.+|+.+....+ ..+.+.. .+.+++.+.+.+++....
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~D-----~ll~v~~-----~d~~~l~~~i~~~l~~~~ 64 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEYD-----LIVKVET-----DTLKDLDQFITEKIRKMP 64 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSCS-----EEEEEEE-----SSHHHHHHHHHTTGGGCT
T ss_pred HHHHHHHHhCCCCeeEEEEEcccCC-----EEEEEEE-----CCHHHHHHHHHHHhccCC
Confidence 4789999999999999998853222 3333333 356777777766665443
No 77
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=40.61 E-value=38 Score=31.62 Aligned_cols=67 Identities=13% Similarity=0.027 Sum_probs=42.4
Q ss_pred hhhhHHHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCC-----CCCHHHHHHHHhhcC--CeEEEE
Q 011116 15 ARFTLSHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANP-----LSSTSEVSHQIQLSK--PSIAFA 86 (493)
Q Consensus 15 ~~~~lA~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~-----~~~~~~l~~~l~~~~--~~~il~ 86 (493)
..-.+...| ...++++||.|.+-.+ .... ..-++...|+.++.++. ....+.+...+...+ +++|+.
T Consensus 62 gt~al~~al-~~l~~~~Gd~Vi~~~~-~~~~---~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 62 ATLGLMAAI-QLKKRKKGKYALMPSF-TFPA---TPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHHHHHHH-HHHSCTTCCEEEEESS-SCTH---HHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHHHHHHH-HHcCCCCcCEEEECCC-CcHH---HHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 334334445 4457899999988777 4433 34456678987665543 246888888774444 677764
No 78
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=40.26 E-value=37 Score=31.43 Aligned_cols=65 Identities=11% Similarity=0.064 Sum_probs=45.3
Q ss_pred hhCCCCCCCEEEEECCCCCCc--HHHHHHHHHHcCCeeccCCCCCCHH-----------------------HHHHHHhhc
Q 011116 25 KRDSLCRKTTSLTSSPLPPST--SPVLYFSLLSLGVVISPANPLSSTS-----------------------EVSHQIQLS 79 (493)
Q Consensus 25 ~~~gl~~gd~V~l~~~~~~~~--~~~~~lA~~~~G~~~v~i~~~~~~~-----------------------~l~~~l~~~ 79 (493)
...|+.++|++...++ -+.. -+...++++..|+.+++.+ +.+. .+...+++.
T Consensus 128 ~~~~~~~~d~~l~~~p-~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 204 (369)
T 3hgu_A 128 QHRPGRPSGNTLAAIP-TGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQ 204 (369)
T ss_dssp TTSTTCCCCEEEECSC-CTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhhCCCCcceEEEecC-CCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhC
Confidence 4568999999999998 6333 2344455588898666543 3444 666688999
Q ss_pred CCeEEEEcCCCcc
Q 011116 80 KPSIAFATSHTSY 92 (493)
Q Consensus 80 ~~~~il~~~~~~~ 92 (493)
++.+++..+....
T Consensus 205 ~~t~l~~~Ps~~~ 217 (369)
T 3hgu_A 205 DIRFLVTTPPVLR 217 (369)
T ss_dssp CEEEEEECHHHHH
T ss_pred CCCEEEeCHHHHH
Confidence 9999888765433
No 79
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=40.19 E-value=48 Score=30.58 Aligned_cols=58 Identities=14% Similarity=0.087 Sum_probs=40.0
Q ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 011116 29 LCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATS 88 (493)
Q Consensus 29 l~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~ 88 (493)
+++|++|..... +-.-..+-++|...|..++.+-|...+..-...++..+++++++..
T Consensus 75 ~~~g~~vv~aSs--GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 132 (343)
T 2pqm_A 75 LKPGMEIIESTS--GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEG 132 (343)
T ss_dssp SCTTCEEEEECS--SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred CCCCCEEEEECC--cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 578887777765 5555556666777887766554444444556688889999999874
No 80
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=39.88 E-value=68 Score=29.57 Aligned_cols=61 Identities=8% Similarity=0.127 Sum_probs=40.4
Q ss_pred hhCCCCCCCEEEEECCCCC-CcHHHHHHHHHHcCCee-ccCCCCCCHHHHHHHHhhcCCeEEEEc
Q 011116 25 KRDSLCRKTTSLTSSPLPP-STSPVLYFSLLSLGVVI-SPANPLSSTSEVSHQIQLSKPSIAFAT 87 (493)
Q Consensus 25 ~~~gl~~gd~V~l~~~~~~-~~~~~~~lA~~~~G~~~-v~i~~~~~~~~l~~~l~~~~~~~il~~ 87 (493)
...++++|++|+++.. .+ +-.+++.+|- ..|+.. +.++.....++....++..++..++..
T Consensus 161 ~~~~~~~g~~VlV~Ga-~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~ 223 (357)
T 1zsy_A 161 DFEQLQPGDSVIQNAS-NSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITE 223 (357)
T ss_dssp HSSCCCTTCEEEESST-TSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEH
T ss_pred HHhccCCCCEEEEeCC-cCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCCcEEEec
Confidence 3358999999999987 55 4455555544 568854 444544445555667778888887753
No 81
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=39.42 E-value=91 Score=28.44 Aligned_cols=60 Identities=10% Similarity=0.102 Sum_probs=38.2
Q ss_pred CCCCCCEEEEECCCCCC----cHHHHHHHHH---HcCCeeccCCC------------CCCHHHHHHHHhhcCCeEEEEcC
Q 011116 28 SLCRKTTSLTSSPLPPS----TSPVLYFSLL---SLGVVISPANP------------LSSTSEVSHQIQLSKPSIAFATS 88 (493)
Q Consensus 28 gl~~gd~V~l~~~~~~~----~~~~~~lA~~---~~G~~~v~i~~------------~~~~~~l~~~l~~~~~~~il~~~ 88 (493)
-+++||+|++++| .+. .--..-.|+. ..|..++.-.. ....++|...+..-.+++|++..
T Consensus 8 ~L~~GD~I~ivaP-Ss~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAP-SRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECS-SSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeC-CCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 4799999999999 542 1112223332 34766654322 12357778888888899999875
No 82
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=38.65 E-value=99 Score=27.98 Aligned_cols=62 Identities=10% Similarity=0.031 Sum_probs=40.0
Q ss_pred CCCCCCEEEEECCCCCCcHHHHHHHHHH---cCCeeccCCC------------CCCHHHHHHHHhhcCCeEEEEcCC
Q 011116 28 SLCRKTTSLTSSPLPPSTSPVLYFSLLS---LGVVISPANP------------LSSTSEVSHQIQLSKPSIAFATSH 89 (493)
Q Consensus 28 gl~~gd~V~l~~~~~~~~~~~~~lA~~~---~G~~~v~i~~------------~~~~~~l~~~l~~~~~~~il~~~~ 89 (493)
-+++||+|++++|+..++.-..-.|+.+ .|..++.-.. ....++|...+..-.+++|++...
T Consensus 13 ~L~~Gd~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 89 (311)
T 1zl0_A 13 WQPIDGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLRG 89 (311)
T ss_dssp CCCCCSEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESCC
T ss_pred cCCCcCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEccC
Confidence 5899999999999444443323333333 4766653221 122577777888888999999853
No 83
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=38.56 E-value=59 Score=29.41 Aligned_cols=58 Identities=12% Similarity=0.061 Sum_probs=40.6
Q ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 011116 29 LCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATS 88 (493)
Q Consensus 29 l~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~ 88 (493)
+++|++|..-.. +-.-..+-++|...|..++.+-|...+..-...++..+++++++..
T Consensus 64 ~~~g~~vv~ass--GN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 121 (313)
T 2q3b_A 64 IKPDTIILEPTS--GNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPG 121 (313)
T ss_dssp CCTTCEEEEECS--SHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred CCCCCEEEEeCC--CHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCC
Confidence 477888777444 6666666677778898766655544444456678899999998874
No 84
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=38.28 E-value=99 Score=28.15 Aligned_cols=61 Identities=8% Similarity=0.080 Sum_probs=43.0
Q ss_pred HHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEc
Q 011116 21 HALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFAT 87 (493)
Q Consensus 21 ~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~ 87 (493)
+.| .+.++++|++|++... -++-.+++.+|- ..|+.++.++. +.+.+ ..+++.++..++..
T Consensus 157 ~~l-~~~~~~~g~~VlV~Ga-G~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~~i~~ 217 (340)
T 3s2e_A 157 KGL-KVTDTRPGQWVVISGI-GGLGHVAVQYAR-AMGLRVAAVDI--DDAKL-NLARRLGAEVAVNA 217 (340)
T ss_dssp HHH-HTTTCCTTSEEEEECC-STTHHHHHHHHH-HTTCEEEEEES--CHHHH-HHHHHTTCSEEEET
T ss_pred HHH-HHcCCCCCCEEEEECC-CHHHHHHHHHHH-HCCCeEEEEeC--CHHHH-HHHHHcCCCEEEeC
Confidence 345 6679999999999887 677777776665 46887766543 34444 45677888877654
No 85
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=38.04 E-value=1.1e+02 Score=30.07 Aligned_cols=87 Identities=6% Similarity=-0.155 Sum_probs=65.0
Q ss_pred eecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEEEec-CCC-------HHHHHH
Q 011116 149 VLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFME-RFD-------FEKMLK 220 (493)
Q Consensus 149 v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~~~~-~~~-------~~~~~~ 220 (493)
-.+|...+...+..+...+.. .|.++++++...++-... ....++.++..|+..+..+ ... .+++..
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~----~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~ 122 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLS----LNLKKGDRVALIAETSSE-FVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQG 122 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHH----TCCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHH----cCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHH
Confidence 467888888777776666543 367899999999887653 3467888899999988774 333 578888
Q ss_pred HHHhcCeeecccChHHHHHH
Q 011116 221 AVENYRVTYMPVSPPLIVAF 240 (493)
Q Consensus 221 ~l~~~~~t~l~~~P~~~~~l 240 (493)
.++..++..++........+
T Consensus 123 ~l~~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 123 LLASCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHHHHCCSEEEECGGGHHHH
T ss_pred HHHhcCCCEEEecHHHHHHH
Confidence 99999999888877654443
No 86
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=37.34 E-value=60 Score=30.20 Aligned_cols=57 Identities=4% Similarity=-0.064 Sum_probs=39.0
Q ss_pred hhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCC-eeccCCCCCCHHHHHHHHhhcCCeEEEE
Q 011116 25 KRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGV-VISPANPLSSTSEVSHQIQLSKPSIAFA 86 (493)
Q Consensus 25 ~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~~il~ 86 (493)
.+.++++|++|++... -.+-.+++.+|- ..|+ .++.++. +.+. ..++++.++..++.
T Consensus 176 ~~~~~~~g~~VlV~Ga-G~vG~~aiqlak-~~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 176 DLSGIKAGSTVAILGG-GVIGLLTVQLAR-LAGATTVILSTR--QATK-RRLAEEVGATATVD 233 (370)
T ss_dssp HHHTCCTTCEEEEECC-SHHHHHHHHHHH-HTTCSEEEEECS--CHHH-HHHHHHHTCSEEEC
T ss_pred HhcCCCCCCEEEEECC-CHHHHHHHHHHH-HcCCCEEEEECC--CHHH-HHHHHHcCCCEEEC
Confidence 6678999999999987 556666666655 5788 6665543 3343 44667778877663
No 87
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=36.65 E-value=81 Score=28.79 Aligned_cols=64 Identities=9% Similarity=0.068 Sum_probs=40.8
Q ss_pred HHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCe-eccCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 011116 20 SHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVV-ISPANPLSSTSEVSHQIQLSKPSIAFATS 88 (493)
Q Consensus 20 A~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~-~v~i~~~~~~~~l~~~l~~~~~~~il~~~ 88 (493)
+..+..+.++++|++|++... -+.-.+++++|. ..|+. ++.++. +.+. ..++++.++..++...
T Consensus 149 ~~~~~~~~~~~~g~~VlV~Ga-G~vG~~aiq~ak-~~G~~~vi~~~~--~~~k-~~~a~~lGa~~~i~~~ 213 (346)
T 4a2c_A 149 GLHAFHLAQGCENKNVIIIGA-GTIGLLAIQCAV-ALGAKSVTAIDI--SSEK-LALAKSFGAMQTFNSS 213 (346)
T ss_dssp HHHHHHHTTCCTTSEEEEECC-SHHHHHHHHHHH-HTTCSEEEEEES--CHHH-HHHHHHTTCSEEEETT
T ss_pred HHHHHHHhccCCCCEEEEECC-CCcchHHHHHHH-HcCCcEEEEEec--hHHH-HHHHHHcCCeEEEeCC
Confidence 334446678999999999977 555555555554 45654 344432 3333 4567888888887653
No 88
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=36.32 E-value=51 Score=29.87 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=39.9
Q ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 011116 29 LCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATS 88 (493)
Q Consensus 29 l~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~ 88 (493)
+++|++|.-... +-.-..+-++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 59 ~~~~~~vv~~ss--GN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 116 (316)
T 1y7l_A 59 LTKGKEIVDATS--GNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEG 116 (316)
T ss_dssp SCTTCEEEESCC--SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred CCCCCEEEEeCC--cHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Confidence 377777766554 5566666677778887766554444444556688889999999874
No 89
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=36.00 E-value=19 Score=32.19 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=22.4
Q ss_pred chhhhHHHHHHhhCCCCCCCEEEEECC
Q 011116 14 SARFTLSHALSKRDSLCRKTTSLTSSP 40 (493)
Q Consensus 14 ~~~~~lA~~L~~~~gl~~gd~V~l~~~ 40 (493)
..+-.|...| +++||++||+|.+.+.
T Consensus 22 ~T~~~L~~~L-~~LGI~~Gd~llVHsS 47 (286)
T 3sma_A 22 VTRDRLASDL-AALGVRPGGVLLVHAS 47 (286)
T ss_dssp ECHHHHHHHH-HHHTCCTTCEEEEEEC
T ss_pred cCHHHHHHHH-HHcCCCCCCEEEEEec
Confidence 4445568999 8899999999999999
No 90
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=35.38 E-value=66 Score=31.71 Aligned_cols=58 Identities=14% Similarity=0.020 Sum_probs=43.8
Q ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 011116 29 LCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATS 88 (493)
Q Consensus 29 l~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~ 88 (493)
+++|++|+--.. +-.-..+-++|...|..++.+-|...+..-...++..++.++++..
T Consensus 110 ~~~g~~vv~~ss--GN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 110 LKPGYTIIEPTS--GNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp CCTTCEEEEECS--SHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred CCCCCEEEEeCC--CHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 688998877544 6666777778888898876665555555567788999999999875
No 91
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=35.11 E-value=52 Score=31.44 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=43.4
Q ss_pred CC-CCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 011116 27 DS-LCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATS 88 (493)
Q Consensus 27 ~g-l~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~ 88 (493)
.| +++|....+-.. .+-.-..+-++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 168 ~G~l~~g~~~VV~aS-sGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 168 KGFISPGKSVLVEPT-SGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp TTSCCTTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred cCCCCCCCcEEEEEC-CCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 45 577854444444 57777777788888998876665555555667788999999999864
No 92
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=34.99 E-value=19 Score=22.71 Aligned_cols=28 Identities=4% Similarity=-0.009 Sum_probs=21.5
Q ss_pred cchhhhHHHHHHhhCCCCCCCEEEEECC
Q 011116 13 SSARFTLSHALSKRDSLCRKTTSLTSSP 40 (493)
Q Consensus 13 ~~~~~~lA~~L~~~~gl~~gd~V~l~~~ 40 (493)
...++.+=..+++++|+++||.|.+...
T Consensus 10 ~kgqi~IPk~ir~~lgi~~Gd~v~i~~~ 37 (53)
T 2l66_A 10 RNYQVTIPAKVRQKFQIKEGDLVKVTFD 37 (53)
T ss_dssp SSSCBCCCHHHHHHSCCCTTCEEEEEEC
T ss_pred CCCEEEeCHHHHHHcCcCCCCEEEEEEE
Confidence 3445555667778899999999998876
No 93
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=34.85 E-value=69 Score=28.95 Aligned_cols=58 Identities=5% Similarity=0.003 Sum_probs=39.9
Q ss_pred hhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEc
Q 011116 25 KRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFAT 87 (493)
Q Consensus 25 ~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~ 87 (493)
.+.++++|++|+++...-.+-.+++.+| ...|+.++.+. +.++ ...+++.++..++..
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a-~~~Ga~vi~~~---~~~~-~~~~~~lGa~~~i~~ 203 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLA-KQKGTTVITTA---SKRN-HAFLKALGAEQCINY 203 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEE---CHHH-HHHHHHHTCSEEEET
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHH-HHcCCEEEEEe---ccch-HHHHHHcCCCEEEeC
Confidence 6689999999999974044555555555 46688876653 4455 566778888877644
No 94
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=34.60 E-value=89 Score=30.73 Aligned_cols=64 Identities=17% Similarity=0.089 Sum_probs=50.6
Q ss_pred hhCCCCCCCEEEEECCCCCCcHHH---HHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCCC
Q 011116 25 KRDSLCRKTTSLTSSPLPPSTSPV---LYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHT 90 (493)
Q Consensus 25 ~~~gl~~gd~V~l~~~~~~~~~~~---~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~~ 90 (493)
...+++++|++...+| -...+-. .+++++..|+.++..+ ...++.+...+++.++.++...+..
T Consensus 216 ~~~~~~~~d~~l~~~p-~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~ 282 (539)
T 1mdb_A 216 EVCWLDHSTVYLAALP-MAHNYPLSSPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKVTITALVPPL 282 (539)
T ss_dssp HHHTCCTTCEEEECSC-TTSHHHHHSSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHH
T ss_pred HhhCCCCCCEEEEeec-ccccchhhHHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHcCCeEEEccHHH
Confidence 4568999999999988 6554433 4788889999988654 5788999999999999999887643
No 95
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=34.54 E-value=61 Score=29.24 Aligned_cols=58 Identities=12% Similarity=0.046 Sum_probs=39.9
Q ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 011116 29 LCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATS 88 (493)
Q Consensus 29 l~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~ 88 (493)
+++|++|..-.. +-.-..+-++|...|..++.+-|...+..-...++..+++++++..
T Consensus 62 ~~~g~~vv~ass--GN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 119 (308)
T 2egu_A 62 LKPGDTIVEPTS--GNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPG 119 (308)
T ss_dssp CCTTCEEEEECC--HHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECG
T ss_pred CCCCCEEEEeCC--CHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 477887777444 5566666777778898766554443334455677899999999875
No 96
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=33.66 E-value=1.2e+02 Score=28.15 Aligned_cols=60 Identities=12% Similarity=0.068 Sum_probs=38.4
Q ss_pred CCCCCCEEEEECCCCCCcH----HHHHHHH--H-HcCCeeccCCC------------CCCHHHHHHHHhhcCCeEEEEcC
Q 011116 28 SLCRKTTSLTSSPLPPSTS----PVLYFSL--L-SLGVVISPANP------------LSSTSEVSHQIQLSKPSIAFATS 88 (493)
Q Consensus 28 gl~~gd~V~l~~~~~~~~~----~~~~lA~--~-~~G~~~v~i~~------------~~~~~~l~~~l~~~~~~~il~~~ 88 (493)
-+++||+|++++| .+.-. -..-.|+ + ..|..++.-.. ....++|...+..-.+++|++..
T Consensus 39 ~Lk~GD~I~ivaP-Ss~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 39 PLAVGDTIGFFSS-SAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCTTCEEEEECS-SCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCcCEEEEEeC-CCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 5899999999999 65421 1222222 2 35777654322 12256777777888889999875
No 97
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=33.20 E-value=73 Score=28.63 Aligned_cols=58 Identities=12% Similarity=0.068 Sum_probs=39.6
Q ss_pred CCCCC--EEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 011116 29 LCRKT--TSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATS 88 (493)
Q Consensus 29 l~~gd--~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~ 88 (493)
+++|+ +|..- . .+-.-..+-++|.+.|..++.+-|...+..-...++..+++++++..
T Consensus 57 ~~~g~~~~vv~a-s-sGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~ 116 (304)
T 1ve1_A 57 LRPGSGQVIVEP-T-SGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDP 116 (304)
T ss_dssp CCTTSCCEEEES-C-CSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECT
T ss_pred CCCCCccEEEEe-C-CcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECC
Confidence 57777 66553 3 46666666677778998766554443444556678889999999875
No 98
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=33.05 E-value=2.2e+02 Score=28.00 Aligned_cols=99 Identities=11% Similarity=-0.015 Sum_probs=67.8
Q ss_pred CCCCCeEEEEccCCCCCCc--cceecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCC
Q 011116 128 VYQSDPAAILYSSGTTGKV--KGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGE 205 (493)
Q Consensus 128 ~~~~~~~~i~~TSGTTG~p--K~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~ 205 (493)
..++.++++...+ ..+.. ..-.+|...+...+..+...+.. .+. ++|++...++-...+ ...++.++..|+
T Consensus 32 ~~p~~~A~~~~~~-~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~----~g~-~gd~V~i~~~n~~~~-~~~~lA~~~~Ga 104 (562)
T 3ite_A 32 THPEWKAVEVATG-FLGSQKIVTEDWTYKKLNETANQVANLIIH----ASL-HGRAIAVSLDRSLIA-FAIIVGIMKSGN 104 (562)
T ss_dssp HCTTSEEEEEEEC-C-----CEEEEEEHHHHHHHHHHHHHHHHH----TTC-SSCEEEEECCSCHHH-HHHHHHHHHTTC
T ss_pred HCCCchhhhcccc-cccccccccCCCCHHHHHHHHHHHHHHHHh----cCC-CCCEEEEEeCCCHHH-HHHHHHHHHhCC
Confidence 3567777765432 22222 12467888887777776666543 245 699999998876532 456888899999
Q ss_pred eEEEec-CCCHHHHHHHHHhcCeeecccC
Q 011116 206 TLVFME-RFDFEKMLKAVENYRVTYMPVS 233 (493)
Q Consensus 206 ~~~~~~-~~~~~~~~~~l~~~~~t~l~~~ 233 (493)
..+..+ ....+++...++..++.+++..
T Consensus 105 v~vpl~~~~~~~~l~~~l~~~~~~~~i~~ 133 (562)
T 3ite_A 105 TYVPIEAGLPNDRKSFLLRDSRAAMAFVC 133 (562)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEecCCcCHHHHHHHHHHhcCCCEEEEc
Confidence 988874 5678999999999888876654
No 99
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=32.62 E-value=1.2e+02 Score=30.47 Aligned_cols=91 Identities=10% Similarity=-0.010 Sum_probs=66.8
Q ss_pred CCCeEEEEccCCCCCCccceecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEEE
Q 011116 130 QSDPAAILYSSGTTGKVKGVLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVF 209 (493)
Q Consensus 130 ~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~~ 209 (493)
++.++.+.. .-.+|...+......+...+.. .|.++++++...++-... ....+++++..|+..+.
T Consensus 39 pd~~Av~~~---------~~~lTY~eL~~~a~~lA~~L~~----~Gv~~gd~V~l~~~~s~~-~vva~lA~l~aG~~~vp 104 (617)
T 3rg2_A 39 SDSIAVIDG---------ERQLSYRELNQAADNLACSLRR----QGIKPGETALVQLGNVAE-LYITFFALLKLGVAPVL 104 (617)
T ss_dssp CCSEEEEET---------TEEEEHHHHHHHHHHHHHHHHH----TTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEE
T ss_pred CCCeEEecC---------CceEeHHHHHHHHHHHHHHHHH----cCCCCCCEEEEECCCcHH-HHHHHHHHHhcCeEEcc
Confidence 667776631 2358888887777776666543 367899999999886542 24678889999999887
Q ss_pred e-cCCCHHHHHHHHHhcCeeecccCh
Q 011116 210 M-ERFDFEKMLKAVENYRVTYMPVSP 234 (493)
Q Consensus 210 ~-~~~~~~~~~~~l~~~~~t~l~~~P 234 (493)
. +....+++...++..++.+++...
T Consensus 105 l~~~~~~~~l~~~l~~~~~~~vl~~~ 130 (617)
T 3rg2_A 105 ALFSHQRSELNAYASQIEPALLIADR 130 (617)
T ss_dssp ECTTCCHHHHHHHHHHHCCSEEEEET
T ss_pred CCccccHHHHHHHHhhcCceEEEecc
Confidence 6 456788888899988888877654
No 100
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=32.53 E-value=62 Score=29.40 Aligned_cols=60 Identities=12% Similarity=0.073 Sum_probs=40.7
Q ss_pred CC-CCCCC-EEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 011116 27 DS-LCRKT-TSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATS 88 (493)
Q Consensus 27 ~g-l~~gd-~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~ 88 (493)
.| +++|+ +|... . .+-.-..+-++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 60 ~G~~~~~~~~vv~a-s-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 121 (322)
T 1z7w_A 60 KGLIKPGESVLIEP-T-SGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDP 121 (322)
T ss_dssp TTSCCTTTCEEEEE-C-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred cCCCCCCCCEEEEe-C-CCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Confidence 35 56774 55554 4 46666677777888998766655444444556788889999998874
No 101
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*
Probab=32.45 E-value=77 Score=30.31 Aligned_cols=58 Identities=16% Similarity=0.042 Sum_probs=40.6
Q ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 011116 29 LCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATS 88 (493)
Q Consensus 29 l~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~ 88 (493)
+++|++|+-... +-.-..+-++|...|..++.+-|...+..-...++..+++++++..
T Consensus 158 l~~g~tVV~aSs--GN~G~AlA~aaa~~Gi~~~IvmP~~~s~~k~~~l~~~GAeVv~v~~ 215 (435)
T 1jbq_A 158 LKPGDTIIEPTS--GNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPT 215 (435)
T ss_dssp SCTTCEEEEECS--SHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC
T ss_pred CCCCCEEEEeCC--CHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhCCCEEEEecC
Confidence 578888777655 5555666677778898766554443444456788899999998764
No 102
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=32.32 E-value=1.7e+02 Score=26.49 Aligned_cols=59 Identities=8% Similarity=-0.086 Sum_probs=39.3
Q ss_pred hhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEE
Q 011116 25 KRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFA 86 (493)
Q Consensus 25 ~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~ 86 (493)
++.++++|++|++... .+.-=..+...+...|+.++.+. .+.+.+....+..++..++.
T Consensus 143 ~~~~~~~g~~vlI~Ga-~g~iG~~~~~~a~~~Ga~Vi~~~--~~~~~~~~~~~~~g~~~~~~ 201 (336)
T 4b7c_A 143 DVGQPKNGETVVISGA-AGAVGSVAGQIARLKGCRVVGIA--GGAEKCRFLVEELGFDGAID 201 (336)
T ss_dssp HTTCCCTTCEEEESST-TSHHHHHHHHHHHHTTCEEEEEE--SSHHHHHHHHHTTCCSEEEE
T ss_pred HhcCCCCCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHHHcCCCEEEE
Confidence 5568999999999988 55433444444456798776654 34556665557788776654
No 103
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=31.85 E-value=1.1e+02 Score=27.99 Aligned_cols=60 Identities=20% Similarity=0.087 Sum_probs=38.2
Q ss_pred CCCCCCEEEEECCCCCCcH----HHHHHHH--H-HcCCeeccCCC------------CCCHHHHHHHHhhcCCeEEEEcC
Q 011116 28 SLCRKTTSLTSSPLPPSTS----PVLYFSL--L-SLGVVISPANP------------LSSTSEVSHQIQLSKPSIAFATS 88 (493)
Q Consensus 28 gl~~gd~V~l~~~~~~~~~----~~~~lA~--~-~~G~~~v~i~~------------~~~~~~l~~~l~~~~~~~il~~~ 88 (493)
-+++||+|++++| .+.-. -..-.|+ + ..|..++.-.. ....++|...+..-.+++|++..
T Consensus 9 ~L~~GD~I~ivaP-Ss~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSP-SSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECS-SSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeC-CCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 5899999999999 66421 1222222 2 34777664221 12256777778888889999875
No 104
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=29.80 E-value=1.4e+02 Score=27.44 Aligned_cols=55 Identities=7% Similarity=0.114 Sum_probs=38.2
Q ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCC-------CCHHHHHHHHhhcCCeEEEEc
Q 011116 29 LCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPL-------SSTSEVSHQIQLSKPSIAFAT 87 (493)
Q Consensus 29 l~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~-------~~~~~l~~~l~~~~~~~il~~ 87 (493)
+++||.|++..+ + +.....++...|+.++.++.. ...+.+...++..++++++..
T Consensus 106 ~~~gd~vl~~~~--~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 106 TSPGDQILVQEP--V--YNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp SCTTCEEEECSS--C--CHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCCeEEECCC--C--cHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 578999876555 3 333445666788877766542 678999999886677777654
No 105
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=29.50 E-value=1.2e+02 Score=20.48 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=32.7
Q ss_pred hHHHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCCHHHHHHHHHhcCCCC
Q 011116 398 PVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVAPY 456 (493)
Q Consensus 398 ~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~ 456 (493)
..++.+.|.++|+|.+|..+....+ ..+.+.. .+.+++.+.+.+++...
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~d-----~l~~v~~-----~d~~~l~~~~~~~l~~~ 63 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGVYD-----IVVKVEA-----DSMDKLKDFVTNTIRKL 63 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSSCS-----EEEEEEC-----SSHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHhCCCCeEEEEEEeccCC-----EEEEEEE-----CCHHHHHHHHHHHhcCC
Confidence 3789999999999999988853222 3333332 35677777776556544
No 106
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=28.75 E-value=86 Score=28.89 Aligned_cols=59 Identities=3% Similarity=-0.076 Sum_probs=42.0
Q ss_pred hh--CCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEc
Q 011116 25 KR--DSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFAT 87 (493)
Q Consensus 25 ~~--~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~ 87 (493)
.+ .++++|++|++... -.+-.+++.+|-...|+.++.++. +.+.+ ..++..++..++..
T Consensus 178 ~~~~~~~~~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~~ 238 (359)
T 1h2b_A 178 KKAARTLYPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDV--KEEKL-KLAERLGADHVVDA 238 (359)
T ss_dssp HHHHTTCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEES--SHHHH-HHHHHTTCSEEEET
T ss_pred HhhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeC--CHHHH-HHHHHhCCCEEEec
Confidence 55 78999999999999 777777777776543887665543 34443 44567888887754
No 107
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=27.40 E-value=1.8e+02 Score=26.98 Aligned_cols=64 Identities=17% Similarity=0.007 Sum_probs=40.9
Q ss_pred HHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCC----CCHHHHHHHHhhc--CCeEEEEcC
Q 011116 20 SHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPL----SSTSEVSHQIQLS--KPSIAFATS 88 (493)
Q Consensus 20 A~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~----~~~~~l~~~l~~~--~~~~il~~~ 88 (493)
...+ ...++++||.|.+..+ ....+. .++...|+.++.++.. ...+.+...++.. ++++++...
T Consensus 61 ~~~~-~~l~~~~gd~Vl~~~~-~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 61 HLAL-RVAGVKQDDIVLASSF-TFIASV---APICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HHHH-HHTTCCTTCEEEEESS-SCGGGT---HHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HHHH-HHcCCCCCCEEEECCC-ccHHHH---HHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 3344 4445789999988888 555543 3344578776655432 4678888888764 567766654
No 108
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=26.73 E-value=89 Score=28.55 Aligned_cols=59 Identities=7% Similarity=-0.100 Sum_probs=41.8
Q ss_pred hhC--CCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEc
Q 011116 25 KRD--SLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFAT 87 (493)
Q Consensus 25 ~~~--gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~ 87 (493)
.+. ++++|++|++... -.+-.+++.+|-..-|+.++.++. +.+. ..++++.++..++..
T Consensus 163 ~~~~~~~~~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~~--~~~~-~~~~~~lGa~~~i~~ 223 (345)
T 3jv7_A 163 SRVLPLLGPGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDL--DDDR-LALAREVGADAAVKS 223 (345)
T ss_dssp HTTGGGCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEES--CHHH-HHHHHHTTCSEEEEC
T ss_pred HHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC--CHHH-HHHHHHcCCCEEEcC
Confidence 553 7999999999988 667777777776665677666643 3444 446677888877754
No 109
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=26.69 E-value=1.4e+02 Score=30.08 Aligned_cols=67 Identities=12% Similarity=0.006 Sum_probs=52.3
Q ss_pred hhCCCCCCCEEEEECCCCCCcHH-HHHHHHHHcCCeeccCC-CCCCHHHHHHHHhhcCCeEEEEcCCCcc
Q 011116 25 KRDSLCRKTTSLTSSPLPPSTSP-VLYFSLLSLGVVISPAN-PLSSTSEVSHQIQLSKPSIAFATSHTSY 92 (493)
Q Consensus 25 ~~~gl~~gd~V~l~~~~~~~~~~-~~~lA~~~~G~~~v~i~-~~~~~~~l~~~l~~~~~~~il~~~~~~~ 92 (493)
...++.++|++...++ -+.+.- ..+++.+..|+.++..+ ....++.+...+++.++..+...+....
T Consensus 197 ~~~~~~~~d~~l~~~p-~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~ 265 (620)
T 4dg8_A 197 SFLAFAPQMRFLVNSP-LSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFN 265 (620)
T ss_dssp GGGTTCTTCEEEECSC-TTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHH
T ss_pred HhhCCCCCCEEEEECc-cCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHH
Confidence 3458899999999999 666554 44678888888877653 3567899999999999999998875444
No 110
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=26.14 E-value=98 Score=28.57 Aligned_cols=63 Identities=13% Similarity=0.014 Sum_probs=39.1
Q ss_pred HHHHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCC--CC---CCHHHHHHHHhhcCCeEEEEcC
Q 011116 20 SHALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPAN--PL---SSTSEVSHQIQLSKPSIAFATS 88 (493)
Q Consensus 20 A~~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~--~~---~~~~~l~~~l~~~~~~~il~~~ 88 (493)
...+ ...++++||.|++-.+ ... . ..-++...|+.++.++ +. ...+.+...++. ++++++...
T Consensus 68 ~~~~-~~~~~~~gd~Vl~~~~-~~~-~--~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~ 135 (393)
T 1mdo_A 68 HIAL-MALGIGEGDEVITPSM-TWV-S--TLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPVH 135 (393)
T ss_dssp HHHH-HHTTCCTTCEEEEESS-SCH-H--HHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCBC
T ss_pred HHHH-HHcCCCCCCEEEeCCC-ccH-h--HHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEeC
Confidence 3444 4455789999887766 333 2 2345566787765554 32 567888877764 667777653
No 111
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=25.13 E-value=1.4e+02 Score=27.16 Aligned_cols=58 Identities=10% Similarity=0.020 Sum_probs=39.9
Q ss_pred HHHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEE
Q 011116 22 ALSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAF 85 (493)
Q Consensus 22 ~L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il 85 (493)
.| .+.++++|++|++... -++-.+++.+|- ..|+.++.+..+.. .+ ..+++.++..++
T Consensus 168 ~l-~~~~~~~g~~VlV~Ga-G~vG~~a~qla~-~~Ga~Vi~~~~~~~--~~-~~~~~lGa~~v~ 225 (348)
T 3two_A 168 PL-KFSKVTKGTKVGVAGF-GGLGSMAVKYAV-AMGAEVSVFARNEH--KK-QDALSMGVKHFY 225 (348)
T ss_dssp HH-HHTTCCTTCEEEEESC-SHHHHHHHHHHH-HTTCEEEEECSSST--TH-HHHHHTTCSEEE
T ss_pred HH-HhcCCCCCCEEEEECC-cHHHHHHHHHHH-HCCCeEEEEeCCHH--HH-HHHHhcCCCeec
Confidence 45 6679999999999877 666666666665 46887776654332 22 345667888877
No 112
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=25.13 E-value=26 Score=22.78 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=20.9
Q ss_pred chhhhHHHHHHhhCCCCCCCEEEEECC
Q 011116 14 SARFTLSHALSKRDSLCRKTTSLTSSP 40 (493)
Q Consensus 14 ~~~~~lA~~L~~~~gl~~gd~V~l~~~ 40 (493)
..++.+=..+++++|+++||.|.+...
T Consensus 21 kGqItIPkeiR~~Lgi~~Gd~l~i~~~ 47 (59)
T 1yfb_A 21 LGRVVIPIELRRTLGIAEKDALEIYVD 47 (59)
T ss_dssp TCEEECCHHHHHHTTCCTTCEEEEEEE
T ss_pred CCEEEeCHHHHHHcCCCCCCEEEEEEE
Confidence 444555667778899999999988776
No 113
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=24.86 E-value=67 Score=29.51 Aligned_cols=58 Identities=9% Similarity=-0.128 Sum_probs=39.7
Q ss_pred hhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCC-eeccCCCCCCHHHHHHHHhhcCCeEEEEc
Q 011116 25 KRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGV-VISPANPLSSTSEVSHQIQLSKPSIAFAT 87 (493)
Q Consensus 25 ~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~~il~~ 87 (493)
.+.++++|++|+++.. -.+-.+++.+|- ..|+ .++.++. +.+. ..++++.++..++..
T Consensus 160 ~~~~~~~g~~VlV~Ga-G~vG~~a~qla~-~~Ga~~Vi~~~~--~~~~-~~~~~~lGa~~vi~~ 218 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGI-GPVGLMSVAGAN-HLGAGRIFAVGS--RKHC-CDIALEYGATDIINY 218 (352)
T ss_dssp HHTTCCTTCCEEEECC-SHHHHHHHHHHH-TTTCSSEEEECC--CHHH-HHHHHHHTCCEEECG
T ss_pred HhcCCCCCCEEEEECC-CHHHHHHHHHHH-HcCCcEEEEECC--CHHH-HHHHHHhCCceEEcC
Confidence 6789999999999977 556666666654 5687 5665553 2333 456677888777643
No 114
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=24.77 E-value=1.1e+02 Score=28.66 Aligned_cols=58 Identities=14% Similarity=0.017 Sum_probs=40.8
Q ss_pred CCCC-EEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcCC
Q 011116 30 CRKT-TSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSH 89 (493)
Q Consensus 30 ~~gd-~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~~ 89 (493)
++++ +|+.-. .+-.-..+-++|...|..++.+-|...+..-...++..++++++++..
T Consensus 109 ~~~~~~vv~aS--sGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~ 167 (398)
T 4d9i_A 109 IGEKMTFATTT--DGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMN 167 (398)
T ss_dssp CSCCCEEEEEC--SSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSSC
T ss_pred ccCCCEEEEEC--CCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3455 565533 466667777778888988766655555556677889999999888753
No 115
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=24.73 E-value=38 Score=29.95 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.6
Q ss_pred chhhhHHHHHHhhCCCCCCCEEEEECC
Q 011116 14 SARFTLSHALSKRDSLCRKTTSLTSSP 40 (493)
Q Consensus 14 ~~~~~lA~~L~~~~gl~~gd~V~l~~~ 40 (493)
..+-.|...| +++||++||+|.+...
T Consensus 15 ~t~~~l~~~L-~~LGi~~Gd~llVHsS 40 (268)
T 3ijw_A 15 NTIKTITNDL-RKLGLKKGMTVIVHSS 40 (268)
T ss_dssp BCHHHHHHHH-HHHTCCTTCEEEEEEC
T ss_pred cCHHHHHHHH-HHcCCCCCCEEEEEec
Confidence 3455679999 8899999999999999
No 116
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=23.40 E-value=1.7e+02 Score=27.77 Aligned_cols=55 Identities=15% Similarity=0.200 Sum_probs=32.8
Q ss_pred CCCCCEEEEECCCCCCcHHHHHH--HHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEc
Q 011116 29 LCRKTTSLTSSPLPPSTSPVLYF--SLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFAT 87 (493)
Q Consensus 29 l~~gd~V~l~~~~~~~~~~~~~l--A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~ 87 (493)
+++||.|++-.+ ........+ .+...|+.++.++.. ..+.+...++. ++++|+.+
T Consensus 118 ~~~Gd~Vi~~~~--~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~e 174 (430)
T 3ri6_A 118 ARAGDSVVTTDR--LFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFLE 174 (430)
T ss_dssp CCTTCEEEEETT--CCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEEE
T ss_pred hCCCCEEEEcCC--CchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEEE
Confidence 678888866655 333332222 556678777777655 56666666654 55666654
No 117
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=23.32 E-value=3e+02 Score=25.27 Aligned_cols=55 Identities=4% Similarity=-0.054 Sum_probs=38.1
Q ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhc---CCeEEEEcC
Q 011116 29 LCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLS---KPSIAFATS 88 (493)
Q Consensus 29 l~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~---~~~~il~~~ 88 (493)
+++||.|++-.+ ... ....++...|+.+++++. ...+.+...++.. +++++++..
T Consensus 124 ~~~gd~V~~~~p-~~~---~~~~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~ 181 (398)
T 3a2b_A 124 MGRNDYILLDER-DHA---SIIDGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDG 181 (398)
T ss_dssp SCTTCEEEEETT-CCH---HHHHHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEES
T ss_pred hCCCCEEEECCc-cCH---HHHHHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeC
Confidence 578999887776 333 334456667888877764 5678888888775 577777654
No 118
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=23.25 E-value=2.1e+02 Score=26.00 Aligned_cols=58 Identities=16% Similarity=0.025 Sum_probs=36.8
Q ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCC--C--CCHHHHHHHHhhcCCeEEEEcC
Q 011116 29 LCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANP--L--SSTSEVSHQIQLSKPSIAFATS 88 (493)
Q Consensus 29 l~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~--~--~~~~~l~~~l~~~~~~~il~~~ 88 (493)
+++||.|++..+ ... .....-.+...|+.++.++. . ...+++...++..++++++...
T Consensus 74 ~~~gd~vi~~~~-~~~-~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 135 (384)
T 3zrp_A 74 LKPNDKILVVSN-GVF-GDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTH 135 (384)
T ss_dssp CCTTCEEEEECS-SHH-HHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEES
T ss_pred cCCCCEEEEecC-Ccc-hHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeC
Confidence 789999888766 321 11122233456876665543 2 4788999988886777777663
No 119
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=22.76 E-value=77 Score=29.24 Aligned_cols=65 Identities=11% Similarity=0.026 Sum_probs=39.3
Q ss_pred HHHHHhhCCCCCCCEEEEECCCCCCcH-HHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 011116 20 SHALSKRDSLCRKTTSLTSSPLPPSTS-PVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATS 88 (493)
Q Consensus 20 A~~L~~~~gl~~gd~V~l~~~~~~~~~-~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~~~ 88 (493)
+..+....+++++|++...+| -...+ +..++..+..|+..+...+... ....+++.++..+...+
T Consensus 66 ~~~~~~~~~~~~~d~~l~~~p-l~h~~gl~~~~~~l~~g~~~~~~~~~~~---~~~~i~~~~~t~~~~~P 131 (358)
T 4gs5_A 66 AAMTGKALSLGPGTRALVCLN-VGYIAGLMMLVRGMELDWELTVTEPTAN---PLAGLDHADFDFVAMVP 131 (358)
T ss_dssp HHHHHHHTTCCTTCEEEECSC-TTSHHHHHHHHHHHHHTCEEEEECCCSC---TTTTCSSCCCSEEEECH
T ss_pred HHHHHHHhCCCCCCEEEEECC-hHHHHHHHHHHHHHHhCcEEEecCcccc---HHHHHHHhCCeEEEcCh
Confidence 344446679999999999998 55443 3445556677777666554432 12334555555555443
No 120
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=22.76 E-value=2.2e+02 Score=26.16 Aligned_cols=55 Identities=7% Similarity=0.116 Sum_probs=35.3
Q ss_pred CCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccC--CCC---CCHHHHHHHHhhcCCeEEEEc
Q 011116 28 SLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPA--NPL---SSTSEVSHQIQLSKPSIAFAT 87 (493)
Q Consensus 28 gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i--~~~---~~~~~l~~~l~~~~~~~il~~ 87 (493)
++++||.|.+..+ . +.....++...|+.++.+ ++. ...+.+...++. ++++++..
T Consensus 76 ~~~~g~~Vi~~~~-~---~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 135 (390)
T 3b8x_A 76 RLKKGDEIIVPAV-S---WSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILTV 135 (390)
T ss_dssp SCCTTCEEEEESS-S---CHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCcCEEEECCC-C---cHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEEE
Confidence 6889999887766 3 333334566778776554 432 357788877754 56666664
No 121
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=22.71 E-value=43 Score=29.70 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.6
Q ss_pred chhhhHHHHHHhhCCCCCCCEEEEECC
Q 011116 14 SARFTLSHALSKRDSLCRKTTSLTSSP 40 (493)
Q Consensus 14 ~~~~~lA~~L~~~~gl~~gd~V~l~~~ 40 (493)
..+-.|...| +++||++||+|.+.+.
T Consensus 13 ~T~~~L~~~L-~~LGI~~Gd~llVHsS 38 (273)
T 2nyg_A 13 RTKQSITEDL-KALGLKKGMTVLVHSS 38 (273)
T ss_dssp BCHHHHHHHH-HHHTCCTTCEEEEEEC
T ss_pred cCHHHHHHHH-HHcCCCCCCEEEEEec
Confidence 4455679999 8899999999999999
No 122
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=21.74 E-value=1.7e+02 Score=27.08 Aligned_cols=60 Identities=7% Similarity=-0.168 Sum_probs=39.8
Q ss_pred HHhhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCC-eeccCCCCCCHHHHHHHHhhcCCeEEEEc
Q 011116 23 LSKRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGV-VISPANPLSSTSEVSHQIQLSKPSIAFAT 87 (493)
Q Consensus 23 L~~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~~il~~ 87 (493)
|.++.++++|++|+++.. -.+-.+++.+|- ..|+ .++.++.+.. . ..++++.++..++..
T Consensus 185 l~~~~~~~~g~~VlV~Ga-G~vG~~a~q~a~-~~Ga~~Vi~~~~~~~--~-~~~a~~lGa~~vi~~ 245 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGL-GTVGLAVAEGAK-TAGASRIIGIDIDSK--K-YETAKKFGVNEFVNP 245 (378)
T ss_dssp HHTTTCCCTTCCEEEECC-SHHHHHHHHHHH-HHTCSCEEEECSCTT--H-HHHHHTTTCCEEECG
T ss_pred HHhhcCCCCCCEEEEECC-CHHHHHHHHHHH-HcCCCeEEEEcCCHH--H-HHHHHHcCCcEEEcc
Confidence 335578999999999987 556666666655 5687 5666654332 3 235677888776643
No 123
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=21.35 E-value=1.3e+02 Score=27.49 Aligned_cols=57 Identities=12% Similarity=-0.035 Sum_probs=33.6
Q ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCC--C--CCHHHHHHHHhhcCCeEEEEc
Q 011116 29 LCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANP--L--SSTSEVSHQIQLSKPSIAFAT 87 (493)
Q Consensus 29 l~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~--~--~~~~~l~~~l~~~~~~~il~~ 87 (493)
.++||.|++..+ ....+.-...++...|+.++.++. . ...+++...++. ++++++..
T Consensus 86 ~~~gd~vl~~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 146 (384)
T 1eg5_A 86 EKRKRTIITTPI-EHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIM 146 (384)
T ss_dssp TTTCCEEEECTT-SCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEE
T ss_pred cCCCCEEEECCC-CchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEE
Confidence 368898877665 433333334344566876655543 2 456777777754 56666654
No 124
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=21.32 E-value=1.2e+02 Score=21.16 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=31.9
Q ss_pred hHHHHHHHhcCCCcceEEEEeeeCCCCCeeEEEEEEeCCCCCCCHHHHHHHHHhcCCCC
Q 011116 398 PVELEHLLHSNPEIADAAVIPYPDEEAGQIPMAFVVRKPGSNITEAEIMDFIAKQVAPY 456 (493)
Q Consensus 398 ~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~ 456 (493)
..++++.|.++|+|.+|+.+.-..+ ..+.+.. .+.+++.+.+.+++...
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~D-----~ll~v~~-----~d~~~l~~~l~~~l~~~ 63 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGPYD-----LVALVRL-----KDVEELDDVVTQGILSL 63 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSSSS-----EEEEEEE-----SSGGGHHHHCCCCCTTS
T ss_pred HHHHHHHHhcCCCeEEEEEeecCCC-----EEEEEEE-----CCHHHHHHHHHHhcccC
Confidence 4789999999999999999853322 3344433 23456666665555544
No 125
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=21.03 E-value=2.3e+02 Score=27.36 Aligned_cols=77 Identities=9% Similarity=-0.083 Sum_probs=57.0
Q ss_pred eecchHHHHHHHHHhhhhcccCCCCCCCCCCcEEEEecChhHHHHHHHHHHHHhcCCeEEEe-cCCCHHHHHHHHHhcCe
Q 011116 149 VLLSHLNVIAIIAGYYHVTEETDPNEGPPPHPVSFFTLPMFHVFGFFMLVRAASKGETLVFM-ERFDFEKMLKAVENYRV 227 (493)
Q Consensus 149 v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~l~~G~~~~~~-~~~~~~~~~~~l~~~~~ 227 (493)
-.+|...+......+...+ ..++++...++-... ....++.++..|+..+.. +....+++...++..++
T Consensus 47 ~~~Ty~eL~~~~~~~A~~L---------~~~~~V~i~~~~~~~-~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~ 116 (505)
T 3nyq_A 47 RSLTYAELAAAAGATAGRI---------GGAGRVAVWATPAME-TGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAP 116 (505)
T ss_dssp EEEEHHHHHHHHHHHHTTC---------C---CEEEECCSSHH-HHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCC
T ss_pred eeeeHHHHHHHHHHHHhhc---------cCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCC
Confidence 4588999988877776665 346788877776432 346788889999999877 45678999999999999
Q ss_pred eecccChH
Q 011116 228 TYMPVSPP 235 (493)
Q Consensus 228 t~l~~~P~ 235 (493)
.+++..+.
T Consensus 117 ~~vi~~~~ 124 (505)
T 3nyq_A 117 SLVLAPPD 124 (505)
T ss_dssp SEEEECTT
T ss_pred CEEEECCc
Confidence 98887653
No 126
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=20.73 E-value=1.1e+02 Score=28.10 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=38.4
Q ss_pred hhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCCeeccCCCCCCHHHHHHHHhhcCCeEEEE
Q 011116 25 KRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFA 86 (493)
Q Consensus 25 ~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~il~ 86 (493)
.+.++++|++|++... -++-.+++.+|- ..|+.++.++ .+.+.+ ..+++.++..++.
T Consensus 162 ~~~~~~~g~~VlV~Ga-G~vG~~a~qla~-~~Ga~Vi~~~--~~~~~~-~~~~~lGa~~~~~ 218 (352)
T 1e3j_A 162 RRAGVQLGTTVLVIGA-GPIGLVSVLAAK-AYGAFVVCTA--RSPRRL-EVAKNCGADVTLV 218 (352)
T ss_dssp HHHTCCTTCEEEEECC-SHHHHHHHHHHH-HTTCEEEEEE--SCHHHH-HHHHHTTCSEEEE
T ss_pred HhcCCCCCCEEEEECC-CHHHHHHHHHHH-HcCCEEEEEc--CCHHHH-HHHHHhCCCEEEc
Confidence 5668999999999987 666666766665 4688754443 234443 4456778776654
No 127
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=20.50 E-value=1.1e+02 Score=27.98 Aligned_cols=57 Identities=11% Similarity=0.159 Sum_probs=38.7
Q ss_pred hhCCCCCCCEEEEECCCCCCcHHHHHHHHHHcCC-eeccCCCCCCHHHHHHHHhhcCCeEEEE
Q 011116 25 KRDSLCRKTTSLTSSPLPPSTSPVLYFSLLSLGV-VISPANPLSSTSEVSHQIQLSKPSIAFA 86 (493)
Q Consensus 25 ~~~gl~~gd~V~l~~~~~~~~~~~~~lA~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~~il~ 86 (493)
.+.++++|++|+++.. -++-.+++.+|- ..|+ .++.++. +.+. ..++++.++..++.
T Consensus 165 ~~~~~~~g~~VlV~Ga-G~vG~~aiqlak-~~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~vi~ 222 (356)
T 1pl8_A 165 RRGGVTLGHKVLVCGA-GPIGMVTLLVAK-AMGAAQVVVTDL--SATR-LSKAKEIGADLVLQ 222 (356)
T ss_dssp HHHTCCTTCEEEEECC-SHHHHHHHHHHH-HTTCSEEEEEES--CHHH-HHHHHHTTCSEEEE
T ss_pred HhcCCCCCCEEEEECC-CHHHHHHHHHHH-HcCCCEEEEECC--CHHH-HHHHHHhCCCEEEc
Confidence 5668999999999987 666677776665 4687 5555543 3333 34556778776664
Done!