BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011117
         (493 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3VK6|A Chain A, Crystal Structure Of A Phosphotyrosine Binding Domain
          Length = 101

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 7/86 (8%)

Query: 69  VHFCVRCDYPIAIYGRLNPCEHVFCLDCA-----RSDSMCYLCDERIQKIQTIKLMEGIF 123
           VHFC +C  PI +YGR+ PC+HVFC DCA     + D MC  C + +Q+I+       +F
Sbjct: 1   VHFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCT-RGSLF 59

Query: 124 ICAAPH-CLKSFLKKTEFEAHIHVSH 148
           +C+    C +++L + + +AHI+  H
Sbjct: 60  MCSIVQGCKRTYLSQRDLQAHINHRH 85


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.134    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,697,339
Number of Sequences: 62578
Number of extensions: 524582
Number of successful extensions: 1070
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1065
Number of HSP's gapped (non-prelim): 8
length of query: 493
length of database: 14,973,337
effective HSP length: 103
effective length of query: 390
effective length of database: 8,527,803
effective search space: 3325843170
effective search space used: 3325843170
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)