Query 011118
Match_columns 493
No_of_seqs 120 out of 266
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 21:11:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011118.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011118hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.8 3.2E-17 1.1E-21 169.3 26.2 387 18-465 29-425 (451)
2 3o7q_A L-fucose-proton symport 99.7 3.3E-14 1.1E-18 146.3 30.8 359 17-456 26-414 (438)
3 4aps_A DI-OR tripeptide H+ sym 99.6 1.8E-12 6E-17 136.0 30.5 396 15-449 11-448 (491)
4 2gfp_A EMRD, multidrug resista 99.5 6.3E-15 2.2E-19 149.2 6.9 343 20-446 3-349 (375)
5 2xut_A Proton/peptide symporte 99.2 5.1E-10 1.8E-14 118.3 18.2 167 14-199 9-182 (524)
6 2cfq_A Lactose permease; trans 99.0 3.2E-10 1.1E-14 117.4 7.3 362 15-448 5-374 (417)
7 4gc0_A D-xylose-proton symport 98.5 6.7E-05 2.3E-09 77.9 26.9 115 320-437 304-419 (491)
8 3o7q_A L-fucose-proton symport 98.1 0.00014 4.6E-09 74.2 18.9 136 312-451 45-182 (438)
9 4aps_A DI-OR tripeptide H+ sym 97.9 0.00044 1.5E-08 71.8 18.7 135 307-448 27-171 (491)
10 2gfp_A EMRD, multidrug resista 97.9 6.7E-05 2.3E-09 75.1 11.3 130 311-447 18-148 (375)
11 1pw4_A Glycerol-3-phosphate tr 97.8 0.00015 5.1E-09 74.0 13.0 133 311-447 46-179 (451)
12 2xut_A Proton/peptide symporte 97.7 0.0005 1.7E-08 72.1 15.6 132 310-447 29-172 (524)
13 4gc0_A D-xylose-proton symport 96.7 0.015 5.1E-07 60.0 13.6 119 326-447 53-185 (491)
14 2cfq_A Lactose permease; trans 95.2 0.011 3.7E-07 60.5 3.9 77 290-366 3-81 (417)
15 2kv5_A FST, putative uncharact 62.3 4.8 0.00017 26.2 2.2 20 174-193 3-22 (33)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.78 E-value=3.2e-17 Score=169.29 Aligned_cols=387 Identities=8% Similarity=-0.033 Sum_probs=235.1
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHH
Q 011118 18 LTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSF 97 (493)
Q Consensus 18 ~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v 97 (493)
.+..++.++++...+..++....|.+..+. .|....+.......++.++.+++.|.+.||++||+++..+.+...+..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 106 (451)
T 1pw4_A 29 IFLGIFFGYAAYYLVRKNFALAMPYLVEQG--FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM 106 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHTTSST--TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 345577778888888888888888866555 566778888888999999999999999999999999988875554442
Q ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHH
Q 011118 98 IVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTC 177 (493)
Q Consensus 98 ~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~ 177 (493)
. + ..+.+.. ..++..+.+. -.+.|.......++... .-.||. ++ ++..+.++.......+.
T Consensus 107 ~----~--~~~~~~~--~~~~~~l~~~---~~l~G~~~~~~~~~~~~-~i~~~~----~~---~~r~~~~~~~~~~~~~g 167 (451)
T 1pw4_A 107 L----F--MGFVPWA--TSSIAVMFVL---LFLCGWFQGMGWPPCGR-TMVHWW----SQ---KERGGIVSVWNCAHNVG 167 (451)
T ss_dssp H----H--HHHCHHH--HSSSSHHHHH---HHHHHHHHHHTHHHHHH-HHHTTC----TT---THHHHHHHHHHHHHHHH
T ss_pred H----H--HHhhhhc--cccHHHHHHH---HHHHHHHhhhccchHHH-HHHHHC----Cc---hhhhHHHHHHHHHHHHH
Confidence 1 1 1110000 1111122221 12335555555544333 334554 33 56899999999999999
Q ss_pred HhhhhHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccccc
Q 011118 178 KLLAPAITGFIISFVS-LQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLL 256 (493)
Q Consensus 178 ~l~gP~~~G~l~~~~s-~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (493)
.++||.++|.+.+..| .+....+.++...+..+.-+ . ..|+.+++.+..+ .++.++ + .
T Consensus 168 ~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~----~~~~~~--~--~------ 226 (451)
T 1pw4_A 168 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF----A---MMRDTPQSCGLPP----IEEYKN--D--Y------ 226 (451)
T ss_dssp HTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHH----H---HCCCSSTTTCCCS----CTTTCC--C---------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH----h---hccCCHhhcCCCC----hhhhcc--c--c------
Confidence 9999999999988887 66655444444444333221 1 2333221110000 000000 0 0
Q ss_pred ccccchhHHHHHHHHHHHHhhhcccccccc-ceeeecccchHHHHHHHHHH-HHhhhhhhHHHHHHHH-cCCCchHHHHH
Q 011118 257 SHDENNAELAEKRWRWKIIDWISNAPCVGA-WQVYLKQEVVLPGVSLALLF-FTVLSFGTLMTATLEW-EGIPAYIIGIA 333 (493)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl~~-~gls~~~iG~~ 333 (493)
+++...... + + ...++. ++..+++|.++......+++ +...++......|+++ .|+++...|.+
T Consensus 227 ~~~~~~~~~-~----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 293 (451)
T 1pw4_A 227 PDDYNEKAE-Q----E--------LTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWA 293 (451)
T ss_dssp -------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHH
T ss_pred cccchhhhh-c----c--------cccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 000000000 0 0 000111 34456777777666655555 3445677778888887 89999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--chhhhhHHHHHHHHHHHHHHHHHHh-hcc-hHHHHHHHHHHHHhhhchhhhhhhhh
Q 011118 334 RGISATIGIAATILYPILQSRI--STLRTGLWSIWSQWFCLLICVASIW-IHN-SLVAAYMLMVGVATSRLGLWMFDLSV 409 (493)
Q Consensus 334 r~~~av~GllgT~~~~~l~~ri--Gl~r~g~~~~~~q~~~L~~~v~~~~-~~~-~~~s~~~l~~gi~~SR~GLw~fDl~~ 409 (493)
.+...+++++|.++.+++.+|+ |..+.-.++.. ++...+..... .+. +.+ .+.....+..++........
T Consensus 294 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~ 367 (451)
T 1pw4_A 294 YFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFM---TLVTIATIVYWMNPAGNPT---VDMICMIVIGFLIYGPVMLI 367 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH---HHHHHHHHHTTSCCTTCHH---HHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH---HHHHHHHHHHHHhcccCHH---HHHHHHHHHHHHHhchHHHH
Confidence 9999999999999999999999 86655443332 11112222222 221 222 22223333345556667777
Q ss_pred hhhhhccCCCCcchhHHHHHHHHHHh-h-HHHHHHHHHhccCCCCchHHHHHHHHHHH
Q 011118 410 IQQMQDLVPESDRCVVGGVQNSLQST-M-DLMAYTMGIIISNPQDFWKLILISVIVVT 465 (493)
Q Consensus 410 ~~l~Qe~vp~~~rG~v~gv~~sl~~~-f-~l~~~~~~ii~~~p~~F~~l~~~S~~~V~ 465 (493)
..+.+|.+|+++||++.|+.++..++ . -++.++.+.+...-+......+.....+.
T Consensus 368 ~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 425 (451)
T 1pw4_A 368 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSIL 425 (451)
T ss_dssp HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 88999999999999999999999998 6 67788888887765533333333333333
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.68 E-value=3.3e-14 Score=146.30 Aligned_cols=359 Identities=10% Similarity=0.002 Sum_probs=219.5
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHH
Q 011118 17 FLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLS 96 (493)
Q Consensus 17 ~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~ 96 (493)
+.+..++...++......++....|.+ .+-++-|....+.......+..++.+++.|.+.||++||+++..+.+.-.+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 104 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG 104 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHH
Confidence 345566777788888888899999985 4556778889999999999999999999999999999999998887554443
Q ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHH
Q 011118 97 FIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLT 176 (493)
Q Consensus 97 v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~ 176 (493)
. .+... .. ...++..+.+. -.+.|.......++.. +.-.||. ++ ++..+.++..+....+
T Consensus 105 ~----~~~~~-~~----~~~~~~~l~~~---~~l~G~~~~~~~~~~~-~~~~~~~----~~---~~r~~~~~~~~~~~~~ 164 (438)
T 3o7q_A 105 A----ALFWP-AA----EIMNYTLFLVG---LFIIAAGLGCLETAAN-PFVTVLG----PE---SSGHFRLNLAQTFNSF 164 (438)
T ss_dssp H----HHHHH-HH----HTTCHHHHHHH---HHHHHHHHHHHHHHHH-HHHHHSS----CS---TTHHHHHHHHHHHHHH
T ss_pred H----HHHHh-cc----ccccHHHHHHH---HHHHHhhHHHhhhhHH-HHHHHHc----Cc---hhHHHHHHHHHHHHHH
Confidence 1 11000 01 11122222221 1233544555554433 3334554 33 4577889999999999
Q ss_pred HHhhhhHHHHHHH-Hhhh-------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhh
Q 011118 177 CKLLAPAITGFII-SFVS-------------------------LQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESS 230 (493)
Q Consensus 177 ~~l~gP~~~G~l~-~~~s-------------------------~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~ 230 (493)
+.++||.+++.+. ...+ .+.......+...+.. .+. .+.+.|+.+++
T Consensus 165 g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~----~~~--~~~~~p~~~~~- 237 (438)
T 3o7q_A 165 GAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVA----LLI--MLTKFPALQSD- 237 (438)
T ss_dssp HHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--HHCCCCCCTTT-
T ss_pred HHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHH----HHH--HHHcCCccccc-
Confidence 9999999999998 5443 2333322222222111 111 12234432210
Q ss_pred hhhhccCCCcccccccCCccccccccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHHH-h
Q 011118 231 QRRIRRSMPIDMEQSTSMPRERESLLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFFT-V 309 (493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~t-V 309 (493)
+ +++ ++ ... ..+.++..+++|.++..+....+++. .
T Consensus 238 --~-----~~~-~~----------------~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (438)
T 3o7q_A 238 --N-----HSD-AK----------------QGS-------------------FSASLSRLARIRHWRWAVLAQFCYVGAQ 274 (438)
T ss_dssp --C-----CCC-SS----------------TTS-------------------HHHHHHHHTTCSHHHHHHHHHHHHHHHH
T ss_pred --c-----ccc-cc----------------ccc-------------------hhhhHHHHHhChHHHHHHHHHHHHHHHH
Confidence 0 000 00 000 01222334566766666655555543 3
Q ss_pred hhhhhHHHHH-HHHc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHH
Q 011118 310 LSFGTLMTAT-LEWE-GIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVA 387 (493)
Q Consensus 310 L~f~~l~~~y-l~~~-gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s 387 (493)
.++...+..| +++. |+++...|.+.+...+++++|.++.+++.+|+|..|...++... +........+.+.....
T Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 351 (438)
T 3o7q_A 275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALI---AMALCLISAFAGGHVGL 351 (438)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH---HHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH---HHHHHHHHHHcCCcHHH
Confidence 4566778888 8875 99999999999999999999999999999999987766655542 22222222233322222
Q ss_pred HHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccCCCCchHH
Q 011118 388 AYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISNPQDFWKL 456 (493)
Q Consensus 388 ~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~p~~F~~l 456 (493)
...++.| ++.-........+.+|..|++ +++..+... .+.+. -++.++.+.+....+.+...
T Consensus 352 ~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~ 414 (438)
T 3o7q_A 352 IALTLCS-----AFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTA 414 (438)
T ss_dssp HHHHHHH-----HHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGG
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 2222223 333334567777888888877 888888766 55544 67777778777665533333
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.57 E-value=1.8e-12 Score=135.97 Aligned_cols=396 Identities=13% Similarity=0.021 Sum_probs=213.1
Q ss_pred chhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHHHHhhhccceeeecc-cchhHHHHH
Q 011118 15 TSFLTTYLYVAHFLARWGARMWEFSVGLYMISV-----WPDSLLFAAIYGAVESASIALFGPIVGHWVDK-LTYVKVLQI 88 (493)
Q Consensus 15 ~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l-----~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr-~~R~~v~~~ 88 (493)
+.+.++.++...++..++-.......+.++.+. ++-|....+.......+...+..++.|.+.|| ++||+++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~ 90 (491)
T 4aps_A 11 QPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFW 90 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 445788999999999999988888889988887 88899999999999999999999999999999 899999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhh
Q 011118 89 WLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNS 168 (493)
Q Consensus 89 ~~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na 168 (493)
+.+...+. +. ++.. ....+..+...+ +.|.......++ ..+.-.||. ++++ .......+
T Consensus 91 ~~~~~~~~----~~---~~~~----~~~~~~~~~~~~----l~g~~~~~~~~~-~~~~~~~~~----~~~~-~~r~~~~~ 149 (491)
T 4aps_A 91 GGVLIMLG----HI---VLAL----PFGASALFGSII----LIIIGTGFLKPN-VSTLVGTLY----DEHD-RRRDAGFS 149 (491)
T ss_dssp HHHHHHHH----HH---HHHS----CCSTTHHHHHHH----HHHHHHHHHHHH-HHHHHHHHS----SSCT-THHHHHHH
T ss_pred HHHHHHHH----HH---HHHH----hhhHHHHHHHHH----HHHHHHHhccch-HHHHHHHHc----Cccc-ccceeeeh
Confidence 86444333 11 1111 111122221111 234444444434 233334554 3333 34667777
Q ss_pred HHHhHHHHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhhhhhhhccCCCcccccccC
Q 011118 169 IIRRIDLTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGI-PALAESSQRRIRRSMPIDMEQSTS 247 (493)
Q Consensus 169 ~mrriDl~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~-p~L~~~~~~~~~~~~~~~~~~~~~ 247 (493)
.......+..++||.++|.+.+..|.+......++...++.+.- ....++. |+-. + ++++ +.
T Consensus 150 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~----~~~~~~~~~~~~----~-----~~~~-~~--- 212 (491)
T 4aps_A 150 IFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY----YFGGKKTLDPHY----L-----RPTD-PL--- 212 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH----HHHHHTTCCSCC----S-----CCSC-CC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH----HHhCcccccccc----c-----CCCC-cc---
Confidence 78888899999999999999998887776654444444433331 1111111 1100 0 0000 00
Q ss_pred Ccccccc--------------------ccccccchhHHHH---HHHHH--HHHhhhccccccccceeeecccchHHHHHH
Q 011118 248 MPRERES--------------------LLSHDENNAELAE---KRWRW--KIIDWISNAPCVGAWQVYLKQEVVLPGVSL 302 (493)
Q Consensus 248 ~~~~~~~--------------------~~~~~~~~~~~~~---~~~~~--~~~~~l~~~~~~~g~~~y~~q~v~la~~al 302 (493)
+.++..+ ..+..+....... ..... ....+..+. .....+...+...+.+.+..
T Consensus 213 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 291 (491)
T 4aps_A 213 APEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISS-VKVTSTEHLRVVSYIPLFIA 291 (491)
T ss_dssp SHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-------------CTTHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHH
Confidence 0000000 0000000000000 00000 000000000 00011111122233333433
Q ss_pred HHHHH-HhhhhhhHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhH-----HHHHHHHHHHHH-
Q 011118 303 ALLFF-TVLSFGTLMTATLEW-EGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGL-----WSIWSQWFCLLI- 374 (493)
Q Consensus 303 alLy~-tVL~f~~l~~~yl~~-~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~-----~~~~~q~~~L~~- 374 (493)
..++. ........++.|..+ .+.+....|.+.+..+++.+.+..+.+++.+|+|-.+... ++.....++...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~ 371 (491)
T 4aps_A 292 AVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLM 371 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHH
Confidence 44433 333455667778875 6777566677777777788888889999999988432211 222211111100
Q ss_pred HHHHHhhc-chHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhccC
Q 011118 375 CVASIWIH-NSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIIISN 449 (493)
Q Consensus 375 ~v~~~~~~-~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~~~ 449 (493)
.......+ ....+...+..+.++..+|.-.+......+.+|..|+++||++.|+.+..+++. -++.++.+.+...
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 372 AIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp HHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred HHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 00000000 011112222233344445555556777889999999999999999999888887 5666666666543
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.53 E-value=6.3e-15 Score=149.22 Aligned_cols=343 Identities=13% Similarity=0.079 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHH
Q 011118 20 TYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIV 99 (493)
Q Consensus 20 ~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~ 99 (493)
..++.+.+++.++..++....|.+. +-++.|....+.......+..++.+++.|.+.||++||+++..+.+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~- 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMA-RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL- 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH-
Confidence 4577889999999999999999854 45666788899999999999999999999999999999999888755444311
Q ss_pred HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHh
Q 011118 100 AGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKL 179 (493)
Q Consensus 100 s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l 179 (493)
. .... .+... +++...+.|.......++.... -.||. ++ ++..+.++..+.......+
T Consensus 81 ---~--~~~~------~~~~~---l~~~~~l~g~~~~~~~~~~~~~-~~~~~----~~---~~~~~~~~~~~~~~~~g~~ 138 (375)
T 2gfp_A 81 ---V--AVTT------SSLTV---LIAASAMQGMGTGVGGVMARTL-PRDLY----ER---TQLRHANSLLNMGILVSPL 138 (375)
T ss_dssp ---H--HHHH------HHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHHHH----HT---SSCCSHHHHHHHHHHHHHH
T ss_pred ---H--HHHh------ccHHH---HHHHHHHHHHHHHhhhhhHHHH-HHHHC----CH---HHHHHHHHHHHHHHHHHHH
Confidence 1 1111 11112 2222223444455454443333 34444 33 3568889999999999999
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccc
Q 011118 180 LAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHD 259 (493)
Q Consensus 180 ~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (493)
+||.++|.+.+..|.+....+..+...+..+. ++...||.+++ + ++. +
T Consensus 139 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~---~---------~~~----~--------- 186 (375)
T 2gfp_A 139 LAPLIGGLLDTMWNWRACYLFLLVLCAGVTFS-------MARWMPETRPV---D---------APR----T--------- 186 (375)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCC-------CCCSSCCCSTT---T---------CCC----C---------
T ss_pred hhHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-------HHHHCcccCCC---C---------ccc----c---------
Confidence 99999999988777766654333333222211 11123331100 0 000 0
Q ss_pred cchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHH-HHhhhhhhHHHHHHHH-cCCCchHHHHHHHHH
Q 011118 260 ENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLF-FTVLSFGTLMTATLEW-EGIPAYIIGIARGIS 337 (493)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl~~-~gls~~~iG~~r~~~ 337 (493)
+ ..++++..+++|.++.......++ +...++....+.|+++ .|+++...|.+.+..
T Consensus 187 -------~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 244 (375)
T 2gfp_A 187 -------R---------------LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILP 244 (375)
T ss_dssp -------C---------------TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTH
T ss_pred -------c---------------HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 0 123344445666555554444443 3344555666667775 799999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhcc
Q 011118 338 ATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWI-HNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDL 416 (493)
Q Consensus 338 av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~-~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~ 416 (493)
.++++++.++.+++.+|.|. + ...+.. .+...+...... ..+..+...+..+.++..+|.-........+.||.
T Consensus 245 ~~~~~~~~~~~~~l~~r~~~-~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 319 (375)
T 2gfp_A 245 IPAAFFGAWFAGRPNKRFST-L-MWQSVI---CCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEP 319 (375)
T ss_dssp HHHHHHHHHHHHTTTTHHHH-H-HHHHHH---HHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHH-H-HHHHHH---HHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 99999999999999999985 2 111111 001111110000 00011223333344444466666788889999999
Q ss_pred CCCCcchhHHHHHHHHHHhh-HHHHHHHHHh
Q 011118 417 VPESDRCVVGGVQNSLQSTM-DLMAYTMGII 446 (493)
Q Consensus 417 vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii 446 (493)
+| ++||+++|+.++.+++. -++.++.+.+
T Consensus 320 ~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l 349 (375)
T 2gfp_A 320 FP-FLAGTAGALVGGLQNIGSGVLASLSAML 349 (375)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred CC-cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 78999999999887766 4444444444
No 5
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.18 E-value=5.1e-10 Score=118.29 Aligned_cols=167 Identities=6% Similarity=-0.110 Sum_probs=109.5
Q ss_pred cchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC------CchHHHHHHHHHHHHHHHhhhccceeeeccc-chhHHH
Q 011118 14 ITSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWP------DSLLFAAIYGAVESASIALFGPIVGHWVDKL-TYVKVL 86 (493)
Q Consensus 14 ~~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~------~sll~~sv~gl~~~l~~llfg~~vG~~vDr~-~R~~v~ 86 (493)
...+.++.++...++..++.-......|.++.+.++ -|....+.......+..++.+++.|.+.||+ +||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 344578889999999999998888888988888776 6777888888889999999999999999999 999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhh
Q 011118 87 QIWLVTQNLSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKM 166 (493)
Q Consensus 87 ~~~~~~q~~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~ 166 (493)
..+.+...+. .. ++.. ...+...+.+. ..+.|.......++.. +.-.||. ++++.......
T Consensus 89 ~~~~~~~~~~----~~---~~~~----~~~~~~~~~~~---~~l~g~~~~~~~~~~~-~~~~~~~----~~~~r~~~~~~ 149 (524)
T 2xut_A 89 LWLSLIYCVG----HA---FLAI----FEHSVQGFYTG---LFLIALGSGGIKPLVS-SFMGDQF----DQSNKSLAQKA 149 (524)
T ss_dssp HHHHHHHHHH----HH---HHHH----TSSCHHHHHHH---HHHHHHHHHTTHHHHH-HHHHHTC----STTTTTHHHHH
T ss_pred HHHHHHHHHH----HH---HHHH----hcccHHHHHHH---HHHHHHhccccchhHH-HHHHHHc----CccchHHHHHH
Confidence 7776433332 11 1111 11122121111 1233444455444433 3334454 33221233445
Q ss_pred hhHHHhHHHHHHhhhhHHHHHHHHhhhhHHHHH
Q 011118 167 NSIIRRIDLTCKLLAPAITGFIISFVSLQASAM 199 (493)
Q Consensus 167 Na~mrriDl~~~l~gP~~~G~l~~~~s~~~a~~ 199 (493)
.+.......+...+||.++|.+.+..|.+....
T Consensus 150 ~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~ 182 (524)
T 2xut_A 150 FDMFYFTINFGSFFASLSMPLLLKNFGAAVAFG 182 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 555777788899999999999998778766553
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.01 E-value=3.2e-10 Score=117.40 Aligned_cols=362 Identities=11% Similarity=-0.003 Sum_probs=176.2
Q ss_pred chhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHH
Q 011118 15 TSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQN 94 (493)
Q Consensus 15 ~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~ 94 (493)
.+|.++.+....++...+--+..--.|.++...++-|....+.......+..++.++..|.+.||++|||++..+...-.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~ 84 (417)
T 2cfq_A 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML 84 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTT
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 45677777777777777766666667887776666666777888888888899999999999999999999877664432
Q ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHH
Q 011118 95 LSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRID 174 (493)
Q Consensus 95 ~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriD 174 (493)
+... .. .............. .... +.+....+...+. ...-.+|++... ++-....+..+...
T Consensus 85 ~~~~---~~-~~~~~~~~~~~~~~---~~~~----~~~~~~g~~~~~~-~~~~~~~~~~~~-----~~~~~~~g~~~~~~ 147 (417)
T 2cfq_A 85 VMFA---PF-FIFIFGPLLQYNIL---VGSI----VGGIYLGFCFNAG-APAVEAFIEKVS-----RRSNFEFGRARMFG 147 (417)
T ss_dssp SCHH---HH-HHHTHHHHHHTTCC---HHHH----GGGSSTTHHHHTT-HHHHHHHHHHHH-----HHHTCCHHHHSSST
T ss_pred HHHH---HH-HHHHHHHHHHHHHH---HHHH----HHHHHHHHHHhhh-HHHHHHHHHHhh-----hhcccchHHHHHHH
Confidence 2110 00 00000000000000 0000 0010001111111 111122321110 11111223333344
Q ss_pred HHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccc
Q 011118 175 LTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERES 254 (493)
Q Consensus 175 l~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (493)
...-.++|.++|.+.+. +.+....+..+...+.. . -.+...|+..++ .+ .++.++.
T Consensus 148 ~~g~~~~~~l~~~l~~~-~~~~~f~~~~~~~~~~~----~---~~~~~~~~~~~~--~~-----~~~~~~~--------- 203 (417)
T 2cfq_A 148 CVGWALGASIVGIMFTI-NNQFVFWLGSGCALILA----V---LLFFAKTDAPSS--AT-----VANAVGA--------- 203 (417)
T ss_dssp TTHHHHHHHHHHHHHHH-CSHHHHTTTTTTTTTHH----H---HSCSSCCCCSCS--SC-----SSSSSSS---------
T ss_pred HHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHH----H---HHHHcCcccccc--cc-----ccccccc---------
Confidence 56678899999998763 44333221111111111 1 111122221100 00 0000000
Q ss_pred ccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHHH-HhhhhhhHHHHHHHH-cC---CCchH
Q 011118 255 LLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLFF-TVLSFGTLMTATLEW-EG---IPAYI 329 (493)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy~-tVL~f~~l~~~yl~~-~g---ls~~~ 329 (493)
+++... . +.++..+++|.++.......++. ....+...+..|+.+ .+ .++..
T Consensus 204 ---~~~~~~---~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (417)
T 2cfq_A 204 ---NHSAFS---L-----------------KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRV 260 (417)
T ss_dssp ---CCCCCC---H-----------------HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHH
T ss_pred ---cccccc---H-----------------HHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhH
Confidence 000000 0 01112234555443333322222 112233345566654 22 34567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHH-hhcchHHHHHHHHHHHHhhhchhhhhhhh
Q 011118 330 IGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASI-WIHNSLVAAYMLMVGVATSRLGLWMFDLS 408 (493)
Q Consensus 330 iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~-~~~~~~~s~~~l~~gi~~SR~GLw~fDl~ 408 (493)
+|.+.++.+++++.+.++.+++.+|+|..|....+... ...+.... +.+ +.+...+ ...+.-++.-.+...
T Consensus 261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~----~~~~~~~~~~~~-~~~~~~~---~~~l~~~~~~~~~~~ 332 (417)
T 2cfq_A 261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTI----MSVRIIGSSFAT-SALEVVI---LKTLHMFEVPFLLVG 332 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH----HHHHHHHHTTCC-SHHHHHH---HTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH----HHHHHHHHHHhc-cHHHHHH---HHHHHHHHHHHHHHH
Confidence 78999999999999999999999999977765544431 11111111 122 2222111 111111222223344
Q ss_pred hhhhhhccCCCCcchhHHHH-HHHHHHhh-HHHHHHHHHhcc
Q 011118 409 VIQQMQDLVPESDRCVVGGV-QNSLQSTM-DLMAYTMGIIIS 448 (493)
Q Consensus 409 ~~~l~Qe~vp~~~rG~v~gv-~~sl~~~f-~l~~~~~~ii~~ 448 (493)
...+..|..|++.||+..|. .++.+++. -++.++.+.+..
T Consensus 333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~ 374 (417)
T 2cfq_A 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE 374 (417)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH
Confidence 56789999999999998887 45555554 456666666654
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.46 E-value=6.7e-05 Score=77.91 Aligned_cols=115 Identities=11% Similarity=0.087 Sum_probs=72.7
Q ss_pred HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHhh
Q 011118 320 LEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWI-HNSLVAAYMLMVGVATS 398 (493)
Q Consensus 320 l~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~-~~~~~s~~~l~~gi~~S 398 (493)
....|.+.......-...++.++.+++++.++.+|+|-.+...++.....+++......... .........++......
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
T 4gc0_A 304 FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAF 383 (491)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 33578888877777778888999999999999999998777666655333333222111211 11222222222222211
Q ss_pred hchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhH
Q 011118 399 RLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD 437 (493)
Q Consensus 399 R~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~ 437 (493)
-.| +......+..|..|.+.|+...|+-.+.+++..
T Consensus 384 ~~~---~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~ 419 (491)
T 4gc0_A 384 AMS---WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLAN 419 (491)
T ss_dssp HTT---TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHH
T ss_pred HhH---HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHH
Confidence 222 233445677899999999999999998888773
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.09 E-value=0.00014 Score=74.15 Aligned_cols=136 Identities=14% Similarity=0.024 Sum_probs=98.5
Q ss_pred hhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 011118 312 FGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYML 391 (493)
Q Consensus 312 f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l 391 (493)
++..+..+.++.|+++.++|++.++..++..++....+++.+|+|..|...++.....+.........+.+ +...+
T Consensus 45 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~----~~~~l 120 (438)
T 3o7q_A 45 NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM----NYTLF 120 (438)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT----CHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccc----cHHHH
Confidence 44456666668999999999999999999999999999999999988887776653222111111102222 23344
Q ss_pred HHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhc-cCCC
Q 011118 392 MVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIII-SNPQ 451 (493)
Q Consensus 392 ~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~-~~p~ 451 (493)
+.+-++..+|.-.++.....++.|..|+++||+..|...+..++. -++..+.+.+. +..+
T Consensus 121 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 121 LVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 455556667777889999999999999999999999998888887 45555555555 4443
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.89 E-value=0.00044 Score=71.76 Aligned_cols=135 Identities=13% Similarity=0.033 Sum_probs=94.4
Q ss_pred HHhhhhhhHHHHHHHH------cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhhhhHHHHHHHHHHHHHHHHHH
Q 011118 307 FTVLSFGTLMTATLEW------EGIPAYIIGIARGISATIGIAATILYPILQSR-ISTLRTGLWSIWSQWFCLLICVASI 379 (493)
Q Consensus 307 ~tVL~f~~l~~~yl~~------~gls~~~iG~~r~~~av~GllgT~~~~~l~~r-iGl~r~g~~~~~~q~~~L~~~v~~~ 379 (493)
+...+....+..|+.+ .|+++...|.+.++..++..++..+++++.+| +|..|...++.... ....+...
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~---~~~~~~~~ 103 (491)
T 4aps_A 27 FSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLI---MLGHIVLA 103 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHH---HHHHHHHH
Confidence 3344566678888885 79999999999999999999999999999999 89888877666422 22222222
Q ss_pred hhcchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCc--chhHHHHHHHHHHhh-HHHHHHHHHhcc
Q 011118 380 WIHNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESD--RCVVGGVQNSLQSTM-DLMAYTMGIIIS 448 (493)
Q Consensus 380 ~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~--rG~v~gv~~sl~~~f-~l~~~~~~ii~~ 448 (493)
+.+ + ...+..+.++..+|.-.+..+...++.|..|+++ ||...+..++..++. -++..+.+.+..
T Consensus 104 ~~~-~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 171 (491)
T 4aps_A 104 LPF-G---ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE 171 (491)
T ss_dssp SCC-S---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhh-h---HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 232 2 1223334444556666778899999999999999 666777666666665 445555666554
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.86 E-value=6.7e-05 Score=75.12 Aligned_cols=130 Identities=9% Similarity=0.003 Sum_probs=95.8
Q ss_pred hhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 011118 311 SFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYM 390 (493)
Q Consensus 311 ~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~ 390 (493)
.+...+..|.++.|.++.++|...++..++..++....+++.+|+|..|...++.....+. .....+.+ +...
T Consensus 18 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~---~~~~~~~~----~~~~ 90 (375)
T 2gfp_A 18 IYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLA---TLVAVTTS----SLTV 90 (375)
T ss_dssp HHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHH---HHHHHHHH----HHHH
T ss_pred HHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH---HHHHHHhc----cHHH
Confidence 3555666677789999999999999999999999999999999999888877666522221 11212221 2334
Q ss_pred HHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhH-HHHHHHHHhc
Q 011118 391 LMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD-LMAYTMGIII 447 (493)
Q Consensus 391 l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~-l~~~~~~ii~ 447 (493)
++.+.++..+|.-.+......++.|..|+++|++.++......++.. ++..+.+.+.
T Consensus 91 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 148 (375)
T 2gfp_A 91 LIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD 148 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44455555666667789999999999999999999999998888774 4444444444
No 11
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=97.81 E-value=0.00015 Score=74.04 Aligned_cols=133 Identities=9% Similarity=-0.100 Sum_probs=92.9
Q ss_pred hhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 011118 311 SFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYM 390 (493)
Q Consensus 311 ~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~ 390 (493)
.+...+..|..+. +++.++|++.++..++..++....+++.+|+|..|...++..... ...++..+.+....+...
T Consensus 46 ~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~ 121 (451)
T 1pw4_A 46 NFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA---AVMLFMGFVPWATSSIAV 121 (451)
T ss_dssp SHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH---HHHHHHHHCHHHHSSSSH
T ss_pred HHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH---HHHHHHHhhhhccccHHH
Confidence 3555666666678 999999999999999999999999999999998887776665322 222222220000011223
Q ss_pred HHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhh-HHHHHHHHHhc
Q 011118 391 LMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTM-DLMAYTMGIII 447 (493)
Q Consensus 391 l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f-~l~~~~~~ii~ 447 (493)
++.+-++..+|.-.+..+...++.|..|+++||+.+|...+..++. -++..+.+.+.
T Consensus 122 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 122 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666678899999999999999999999988887777 44444444443
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.71 E-value=0.0005 Score=72.12 Aligned_cols=132 Identities=12% Similarity=-0.015 Sum_probs=88.9
Q ss_pred hhhhhHHHHHHHH-cC------CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhhhhHHHHHHHHHHHHHHHHHHhh
Q 011118 310 LSFGTLMTATLEW-EG------IPAYIIGIARGISATIGIAATILYPILQSRI-STLRTGLWSIWSQWFCLLICVASIWI 381 (493)
Q Consensus 310 L~f~~l~~~yl~~-~g------ls~~~iG~~r~~~av~GllgT~~~~~l~~ri-Gl~r~g~~~~~~q~~~L~~~v~~~~~ 381 (493)
.+....+..|+.+ .| +++...|.+.++..++.+++....+++.+|+ |..|...++... +....+...+.
T Consensus 29 ~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~---~~~~~~~~~~~ 105 (524)
T 2xut_A 29 YGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLI---YCVGHAFLAIF 105 (524)
T ss_dssp HHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHH---HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH---HHHHHHHHHHh
Confidence 3455667778874 78 9999999999999999999999999999999 988877665542 22222222223
Q ss_pred cchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHH---HHHHHHhh-HHHHHHHHHhc
Q 011118 382 HNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGV---QNSLQSTM-DLMAYTMGIII 447 (493)
Q Consensus 382 ~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv---~~sl~~~f-~l~~~~~~ii~ 447 (493)
+.+. ..++.+.++..+|.-.+..+...++.|..|+++||+..+. ..+..++. -++..+.+.+.
T Consensus 106 ~~~~---~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 172 (524)
T 2xut_A 106 EHSV---QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL 172 (524)
T ss_dssp SSCH---HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH
T ss_pred cccH---HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2122 2233334444555566788999999999999999887776 44444444 33344444443
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=96.72 E-value=0.015 Score=59.99 Aligned_cols=119 Identities=12% Similarity=0.044 Sum_probs=85.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcc--------------hHHHHHHH
Q 011118 326 PAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHN--------------SLVAAYML 391 (493)
Q Consensus 326 s~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~--------------~~~s~~~l 391 (493)
++...|++-+...++.++|+++++++..|+|-.++-.++.... ...++...+.+. ...+...+
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~---~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l 129 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLF---FISGVGSAWPELGFTSINPDNTVPVYLAGYVPEF 129 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH---HHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHH
Confidence 3457888888888999999999999999999888887776532 222222222110 11234455
Q ss_pred HHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhHHHHHHHHHhc
Q 011118 392 MVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMDLMAYTMGIII 447 (493)
Q Consensus 392 ~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~l~~~~~~ii~ 447 (493)
+.+=++..+|.-+.-.....++.|..|+++||+..+..........+..+..+...
T Consensus 130 ~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~ 185 (491)
T 4gc0_A 130 VIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI 185 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh
Confidence 56666666777677788889999999999999999988877777666666666544
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=95.21 E-value=0.011 Score=60.50 Aligned_cols=77 Identities=17% Similarity=0.184 Sum_probs=61.2
Q ss_pred eecccchHHHHHHHHHHHHh-hhhhhHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHH
Q 011118 290 YLKQEVVLPGVSLALLFFTV-LSFGTLMTATLEW-EGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIW 366 (493)
Q Consensus 290 y~~q~v~la~~alalLy~tV-L~f~~l~~~yl~~-~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~ 366 (493)
++++|.++......++|+.. ......+..|+.+ .|+++.+.|.+.+...++..++..+.+++..|+|-.|.-.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~ 81 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIIT 81 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 46777777665555555433 3345678889985 79999999999999999999999999999999998887765554
No 15
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=62.35 E-value=4.8 Score=26.19 Aligned_cols=20 Identities=30% Similarity=0.708 Sum_probs=17.0
Q ss_pred HHHHHhhhhHHHHHHHHhhh
Q 011118 174 DLTCKLLAPAITGFIISFVS 193 (493)
Q Consensus 174 Dl~~~l~gP~~~G~l~~~~s 193 (493)
|.+..++||+++|.+...+.
T Consensus 3 ~i~~~IIaPivVGvvl~L~d 22 (33)
T 2kv5_A 3 DLMSLVIAPIFVGLVLEMIS 22 (33)
T ss_dssp TTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999988654
Done!