Query 011118
Match_columns 493
No_of_seqs 120 out of 266
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 21:11:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011118.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011118hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 99.7 1.8E-15 1.3E-19 152.5 25.8 399 24-479 32-436 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.7 6.4E-16 4.6E-20 151.6 18.6 366 15-451 5-377 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 98.0 1.2E-05 8.6E-10 79.2 12.3 130 304-437 36-165 (447)
4 d1pv7a_ f.38.1.2 (A:) Lactose 97.5 0.00022 1.6E-08 67.6 10.5 77 290-366 3-81 (417)
5 d1q90g_ f.23.26.1 (G:) PetG su 10.5 1.6E+02 0.011 16.9 3.6 19 181-199 3-21 (30)
6 d1rutx3 g.39.1.3 (X:83-113) LI 7.2 16 0.0011 22.0 -2.1 12 475-486 18-29 (31)
7 d2iuba2 f.17.3.1 (A:286-349) M 5.4 1.8E+02 0.013 19.4 2.5 20 165-184 1-20 (64)
8 d2juza1 a.284.1.1 (A:1-72) Unc 4.9 1.7E+02 0.012 20.5 2.0 27 400-426 32-58 (72)
9 d1f08a_ d.89.1.2 (A:) Replicat 4.1 2E+02 0.015 23.0 2.3 27 144-171 31-57 (148)
10 d1r3jc_ f.14.1.1 (C:) Potassiu 4.0 6.3E+02 0.046 17.7 5.6 18 415-432 59-76 (103)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.69 E-value=1.8e-15 Score=152.50 Aligned_cols=399 Identities=9% Similarity=0.006 Sum_probs=219.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHHHHHHHHHHH
Q 011118 24 VAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQNLSFIVAGVS 103 (493)
Q Consensus 24 ~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~~~v~~s~~~ 103 (493)
.++++.......+.++.|. +.+ +.-|.-..+....+..+...+.+++.|.+.||++||+++..+.+...+...+.+
T Consensus 32 ~~~~~~~~~~~~~~~~~p~-~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~-- 107 (447)
T d1pw4a_ 32 FGYAAYYLVRKNFALAMPY-LVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG-- 107 (447)
T ss_dssp HHHHHHHHHHTSHHHHHHH-TTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHH-HHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhcc--
Confidence 3333333333456677775 344 456778889999999999999999999999999999999988765544422111
Q ss_pred HHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHHHHHHhhhhH
Q 011118 104 VITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRIDLTCKLLAPA 183 (493)
Q Consensus 104 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriDl~~~l~gP~ 183 (493)
..+. ...+...+... -.+.|.......++.. ++-.||. ++ ++..+.++.+........+++|.
T Consensus 108 ----~~~~--~~~~~~~~~~~---~~~~g~~~~~~~~~~~-~~i~~~~----~~---~~r~~~~~~~~~~~~~g~~i~~~ 170 (447)
T d1pw4a_ 108 ----FVPW--ATSSIAVMFVL---LFLCGWFQGMGWPPCG-RTMVHWW----SQ---KERGGIVSVWNCAHNVGGGIPPL 170 (447)
T ss_dssp ----HCHH--HHSSSSHHHHH---HHHHHHHHHHTHHHHH-HHHHTTC----TT---THHHHHHHHHHHHHHHHHTSHHH
T ss_pred ----ccch--hhhhHHHHHHH---HHHHHHhhhhhhhHHH-HHHHHHH----Hh---hcccccccccccccchhhhhhhh
Confidence 1110 00111111111 1223444444433323 3334555 22 56789999999999999999999
Q ss_pred HHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCccccccccccccch
Q 011118 184 ITGFIISFVS-LQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERESLLSHDENN 262 (493)
Q Consensus 184 ~~G~l~~~~s-~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (493)
+++.+....+ .+....+......+..++ ... ..++.+++.+....+ +.++ +. +++...
T Consensus 171 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~----~~~~--~~--------~~~~~~ 229 (447)
T d1pw4a_ 171 LFLLGMAWFNDWHAALYMPAFCAILVALF----AFA---MMRDTPQSCGLPPIE----EYKN--DY--------PDDYNE 229 (447)
T ss_dssp HHHHHHHHTCCSTTCTHHHHHHHHHHHHH----HHH---HCCCSSTTTCCCSCT----TTCC--C---------------
T ss_pred hhhhHhhhhhcccccchhhhhhHHHHHHH----HHH---hcccchhhcccchhh----hhhh--hc--------ccchhh
Confidence 9998877653 232222222222222221 111 122222111111000 0000 00 000000
Q ss_pred hHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHHH-HHhhhhhhHHHHHHHH-cCCCchHHHHHHHHHHHH
Q 011118 263 AELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALLF-FTVLSFGTLMTATLEW-EGIPAYIIGIARGISATI 340 (493)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalLy-~tVL~f~~l~~~yl~~-~gls~~~iG~~r~~~av~ 340 (493)
.. + ++ ... ....++..+++|.+.......+++ ....++......|+.+ .|+++...+...+...+.
T Consensus 230 ~~--~----~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (447)
T d1pw4a_ 230 KA--E----QE----LTA--KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYA 297 (447)
T ss_dssp ----------------CC--THHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHH
T ss_pred cc--c----cc----cch--hhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhh
Confidence 00 0 00 000 012233445666665555544444 3334566677788885 799999999999999999
Q ss_pred HHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCC
Q 011118 341 GIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWI-HNSLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPE 419 (493)
Q Consensus 341 GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~-~~~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~ 419 (493)
++.|.++.+++.+|++-.+........- .....+...... +.. +........+...++..+.......+.+|..|+
T Consensus 298 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 374 (447)
T d1pw4a_ 298 GIPGTLLCGWMSDKVFRGNRGATGVFFM-TLVTIATIVYWMNPAG--NPTVDMICMIVIGFLIYGPVMLIGLHALELAPK 374 (447)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHHHHHHHH-HHHHHHHHHTTSCCTT--CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT
T ss_pred hhhhhhhhhhhhhhccccccccccchhH-HHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 9999999999999998543332222211 111111111111 111 111112222233345555566777889999999
Q ss_pred CcchhHHHHHHHHHHhh-HH-HHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011118 420 SDRCVVGGVQNSLQSTM-DL-MAYTMGIIISNPQDFWKLILISVIVVTLAAILYTFHLYRIR 479 (493)
Q Consensus 420 ~~rG~v~gv~~sl~~~f-~l-~~~~~~ii~~~p~~F~~l~~~S~~~V~~~~~l~~~~~~~~R 479 (493)
+.||++.|+.+..+++. .+ ..++.+.+.+.-+......+....++.+..+++....++.|
T Consensus 375 ~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (447)
T d1pw4a_ 375 KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 436 (447)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999988875 44 46777787776665555555555555555555555544333
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.67 E-value=6.4e-16 Score=151.59 Aligned_cols=366 Identities=11% Similarity=-0.003 Sum_probs=201.3
Q ss_pred chhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhccceeeecccchhHHHHHHHHHHH
Q 011118 15 TSFLTTYLYVAHFLARWGARMWEFSVGLYMISVWPDSLLFAAIYGAVESASIALFGPIVGHWVDKLTYVKVLQIWLVTQN 94 (493)
Q Consensus 15 ~~~~~~~L~~s~~lS~~Gdr~~~Fa~~L~lv~l~~~sll~~sv~gl~~~l~~llfg~~vG~~vDr~~R~~v~~~~~~~q~ 94 (493)
++|+++.+...+++...+..++.-..|+++.+.++-|...+++...+..++.++.+++.|.+.||++|||++..+.....
T Consensus 5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~ 84 (417)
T d1pv7a_ 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML 84 (417)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 46799999999999999999998888998888888899999999999999999999999999999999999988875544
Q ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEecCCCChhhhhhhhhHHHhHH
Q 011118 95 LSFIVAGVSVITLLFFSSLKSTNFIAFVLLVILTNISGAVGVISTLAGTILIEREWVVVISEGHPPEALTKMNSIIRRID 174 (493)
Q Consensus 95 ~~v~~s~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~~iaieRDWvv~i~~~~~~~~L~~~Na~mrriD 174 (493)
+.... .. ... .... .....++...+.+............. ......+++ .+..+.+.......
T Consensus 85 ~~~~~-----~~-~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~ 147 (417)
T d1pv7a_ 85 VMFAP-----FF-IFI----FGPL-LQYNILVGSIVGGIYLGFCFNAGAPA-----VEAFIEKVS-RRSNFEFGRARMFG 147 (417)
T ss_dssp HTHHH-----HH-HHT----HHHH-HHTTCHHHHHHTTTTGGGGGTTHHHH-----HHHHHHHHH-HHHSCCHHHHHHHH
T ss_pred HHHHH-----HH-Hhh----hhhh-HHHHHHHHHHHhhhcccccccchhhc-----ccccccchh-hhhHHHHHHHhhhh
Confidence 43211 11 110 0000 00011101011111111111111111 111111111 33455667777788
Q ss_pred HHHHhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccCCCcccccccCCcccccc
Q 011118 175 LTCKLLAPAITGFIISFVSLQASAMTLAIWTTVTVWVEYWLFMSVYKGIPALAESSQRRIRRSMPIDMEQSTSMPRERES 254 (493)
Q Consensus 175 l~~~l~gP~~~G~l~~~~s~~~a~~~i~~~n~~S~~ve~~~l~~Vy~~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (493)
....+++|.++|.+....+..... .......+.-.... -..|+..++.+++++ ++
T Consensus 148 ~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-------~~---------- 202 (417)
T d1pv7a_ 148 CVGWALGASIVGIMFTINNQFVFW----LGSGCALILAVLLF----FAKTDAPSSATVANA-------VG---------- 202 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHHHHH----SSCCCSCSSSCSSHH-------HH----------
T ss_pred cccccccccccccccccccccccc----chhhHHHHHHHHHH----HHhcccccchhhhhh-------hh----------
Confidence 889999999999998865433222 11112222111111 122222110000000 00
Q ss_pred ccccccchhHHHHHHHHHHHHhhhccccccccceeeecccchHHHHHHHHH-HHHhhhhhhHHHHHHH----HcCCCchH
Q 011118 255 LLSHDENNAELAEKRWRWKIIDWISNAPCVGAWQVYLKQEVVLPGVSLALL-FFTVLSFGTLMTATLE----WEGIPAYI 329 (493)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~y~~q~v~la~~alalL-y~tVL~f~~l~~~yl~----~~gls~~~ 329 (493)
.+++.... +...+. .+++..+......+. ++....+......|.. +.+.++..
T Consensus 203 --~~~~~~~~-------~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (417)
T d1pv7a_ 203 --ANHSAFSL-------KLALEL-------------FRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRV 260 (417)
T ss_dssp --SCCCCCCH-------HHHHHH-------------TTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred --hhcccccc-------cccccc-------------cccccccchhhhhHHHHHHHHhhhccccccccccccccccchhh
Confidence 00000000 000000 111111111111111 1111112222222222 24556778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhchhhhhhhhh
Q 011118 330 IGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHNSLVAAYMLMVGVATSRLGLWMFDLSV 409 (493)
Q Consensus 330 iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~~~~s~~~l~~gi~~SR~GLw~fDl~~ 409 (493)
.+...+.++++++.+..+.+++.+|.|..+....+... +........+.+ +.+... ...++..++.-.+....
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~---~~~~l~g~~~~~~~~~~ 333 (417)
T d1pv7a_ 261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTI---MSVRIIGSSFAT-SALEVV---ILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHH---HHHHHHHHHTCC-CHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccchhhhhhhhcccccccchhhhHHH---HHHhhhcccccc-ccchhh---HHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999988876655531 111112222233 222222 22233334555668888
Q ss_pred hhhhhccCCCCcchhHHHHHHHHH-Hhh-HHHHHHHHHhccCCC
Q 011118 410 IQQMQDLVPESDRCVVGGVQNSLQ-STM-DLMAYTMGIIISNPQ 451 (493)
Q Consensus 410 ~~l~Qe~vp~~~rG~v~gv~~sl~-~~f-~l~~~~~~ii~~~p~ 451 (493)
..++||.+|+++||++.|...++. .+. -++.++.|.+...-+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g 377 (417)
T d1pv7a_ 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG 377 (417)
T ss_dssp HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999866543 333 566777777765443
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=98.05 E-value=1.2e-05 Score=79.17 Aligned_cols=130 Identities=11% Similarity=-0.059 Sum_probs=90.3
Q ss_pred HHHHHhhhhhhHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 011118 304 LLFFTVLSFGTLMTATLEWEGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIWSQWFCLLICVASIWIHN 383 (493)
Q Consensus 304 lLy~tVL~f~~l~~~yl~~~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~~q~~~L~~~v~~~~~~~ 383 (493)
..|+.-..++ ....|+.+.|+|++++|+..++..++..++.+..+++..|+|..|...++.....++...+ .+.+.
T Consensus 36 ~~~~~~~~~~-~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~---~~~~~ 111 (447)
T d1pw4a_ 36 AYYLVRKNFA-LAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFM---GFVPW 111 (447)
T ss_dssp HHHHHHTSHH-HHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---HHCHH
T ss_pred HHHHHHHHHH-HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhc---cccch
Confidence 3333323344 3455788899999999999999999999999999999999998888777665332222221 11111
Q ss_pred hHHHHHHHHHHHHhhhchhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHhhH
Q 011118 384 SLVAAYMLMVGVATSRLGLWMFDLSVIQQMQDLVPESDRCVVGGVQNSLQSTMD 437 (493)
Q Consensus 384 ~~~s~~~l~~gi~~SR~GLw~fDl~~~~l~Qe~vp~~~rG~v~gv~~sl~~~f~ 437 (493)
...+...++.+-.+..+|.-....+...++.|..|+++||+..|...+..++..
T Consensus 112 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 165 (447)
T d1pw4a_ 112 ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG 165 (447)
T ss_dssp HHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhh
Confidence 111223334444445555555677888899999999999999999887777663
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=97.46 E-value=0.00022 Score=67.63 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=61.1
Q ss_pred eecccchHHHHHHHHHHHHhh-hhhhHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHH
Q 011118 290 YLKQEVVLPGVSLALLFFTVL-SFGTLMTATLEW-EGIPAYIIGIARGISATIGIAATILYPILQSRISTLRTGLWSIW 366 (493)
Q Consensus 290 y~~q~v~la~~alalLy~tVL-~f~~l~~~yl~~-~gls~~~iG~~r~~~av~GllgT~~~~~l~~riGl~r~g~~~~~ 366 (493)
|+|||.++......++++... .+.+.+..|+++ .|+|+.++|++.++..++..++....+++..|+|-.|...++..
T Consensus 3 ~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~ 81 (417)
T d1pv7a_ 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIIT 81 (417)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHH
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 467777766555555554333 345677788885 79999999999999999999999999999999999888777665
No 5
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=10.49 E-value=1.6e+02 Score=16.89 Aligned_cols=19 Identities=16% Similarity=0.593 Sum_probs=12.2
Q ss_pred hhHHHHHHHHhhhhHHHHH
Q 011118 181 APAITGFIISFVSLQASAM 199 (493)
Q Consensus 181 gP~~~G~l~~~~s~~~a~~ 199 (493)
-|++.|.+.+......+-.
T Consensus 3 E~ll~GivlGlipiTl~Gl 21 (30)
T d1q90g_ 3 EPLLCGIVLGLVPVTIAGL 21 (30)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHhhHHHHHHHH
Confidence 4788888877665444433
No 6
>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.21 E-value=16 Score=22.02 Aligned_cols=12 Identities=17% Similarity=0.625 Sum_probs=8.2
Q ss_pred HHHhhcCCCChh
Q 011118 475 LYRIRKHLFHFD 486 (493)
Q Consensus 475 ~~~~Rghl~h~~ 486 (493)
++|.|+|++|++
T Consensus 18 VmRA~~~VyHl~ 29 (31)
T d1rutx3 18 VMRAQGNVYHLK 29 (31)
T ss_dssp EEEETTEEECGG
T ss_pred heecccceeeec
Confidence 456777777764
No 7
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=5.39 E-value=1.8e+02 Score=19.39 Aligned_cols=20 Identities=15% Similarity=0.474 Sum_probs=16.8
Q ss_pred hhhhHHHhHHHHHHhhhhHH
Q 011118 165 KMNSIIRRIDLTCKLLAPAI 184 (493)
Q Consensus 165 ~~Na~mrriDl~~~l~gP~~ 184 (493)
|.|..|+++..++-+..|.-
T Consensus 1 r~N~~mk~lT~it~iflP~t 20 (64)
T d2iuba2 1 KTNEVMKVLTIIATIFMPLT 20 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHH
Confidence 57899999999998888863
No 8
>d2juza1 a.284.1.1 (A:1-72) Uncharacterized protein HI0840 {Haemophilus influenzae [TaxId: 727]}
Probab=4.86 E-value=1.7e+02 Score=20.54 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=20.5
Q ss_pred chhhhhhhhhhhhhhccCCCCcchhHH
Q 011118 400 LGLWMFDLSVIQQMQDLVPESDRCVVG 426 (493)
Q Consensus 400 ~GLw~fDl~~~~l~Qe~vp~~~rG~v~ 426 (493)
++|+..--+++.++.+.||+++|-.+.
T Consensus 32 LSLMvLGN~vTniln~~V~~~qR~~iA 58 (72)
T d2juza1 32 LSLIALGNMASNLLTTSVPQTQCEALA 58 (72)
T ss_dssp HHHHHHHHHHHHHHTTSSCSTTHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 345555667889999999999997654
No 9
>d1f08a_ d.89.1.2 (A:) Replication initiation protein E1 {Bovine papillomavirus [TaxId: 10571]}
Probab=4.12 E-value=2e+02 Score=23.00 Aligned_cols=27 Identities=7% Similarity=0.183 Sum_probs=17.6
Q ss_pred hhhccceEEEecCCCChhhhhhhhhHHH
Q 011118 144 ILIEREWVVVISEGHPPEALTKMNSIIR 171 (493)
Q Consensus 144 iaieRDWvv~i~~~~~~~~L~~~Na~mr 171 (493)
..--+|||+.+.+..+ +-+...+..++
T Consensus 31 KTcc~dWVv~~~gv~~-~l~ea~k~lLq 57 (148)
T d1f08a_ 31 KTTNQQWVLAVFGLAE-VFFEASFELLK 57 (148)
T ss_dssp TCCEEEEEEEEESCCH-HHHHHHHHHHH
T ss_pred CcccccceEEEEecCH-HHHHHHHHHhh
Confidence 3446799999998854 44455555544
No 10
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=4.04 E-value=6.3e+02 Score=17.72 Aligned_cols=18 Identities=22% Similarity=0.049 Sum_probs=11.9
Q ss_pred ccCCCCcchhHHHHHHHH
Q 011118 415 DLVPESDRCVVGGVQNSL 432 (493)
Q Consensus 415 e~vp~~~rG~v~gv~~sl 432 (493)
+.+|.+..||+.++...+
T Consensus 59 Di~P~t~~gr~~~~~~~~ 76 (103)
T d1r3jc_ 59 DLYPVTLWGRCVAVVVMV 76 (103)
T ss_dssp SSCCCSHHHHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHHH
Confidence 456777788776655544
Done!