Query 011119
Match_columns 493
No_of_seqs 466 out of 3281
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 08:19:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011119.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011119hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2338 Transcriptional effect 100.0 1.7E-39 3.8E-44 327.8 21.1 371 46-487 116-494 (495)
2 PLN03144 Carbon catabolite rep 100.0 4.8E-35 1E-39 310.8 22.5 279 43-332 251-572 (606)
3 COG5239 CCR4 mRNA deadenylase, 99.9 3.8E-24 8.3E-29 208.5 11.6 268 46-334 30-339 (378)
4 PRK11756 exonuclease III; Prov 99.9 6.6E-22 1.4E-26 195.3 18.8 203 47-294 1-236 (268)
5 TIGR03395 sphingomy sphingomye 99.9 2.9E-21 6.4E-26 191.4 21.2 211 47-294 1-244 (283)
6 KOG0620 Glucose-repressible al 99.8 4.1E-21 8.9E-26 194.2 6.3 256 46-318 19-307 (361)
7 COG0708 XthA Exonuclease III [ 99.8 9E-20 2E-24 174.8 15.1 200 47-294 1-229 (261)
8 KOG3873 Sphingomyelinase famil 99.8 2.1E-20 4.5E-25 181.7 9.4 216 46-295 8-258 (422)
9 TIGR00195 exoDNase_III exodeox 99.8 1.4E-18 3E-23 170.3 18.2 199 47-294 1-224 (254)
10 COG3568 ElsH Metal-dependent h 99.8 4.8E-19 1E-23 169.4 13.3 203 47-294 10-228 (259)
11 PRK13911 exodeoxyribonuclease 99.8 8.3E-18 1.8E-22 163.8 18.2 199 47-294 1-223 (250)
12 TIGR00633 xth exodeoxyribonucl 99.8 8.5E-18 1.9E-22 164.3 17.5 200 47-293 1-227 (255)
13 PRK05421 hypothetical protein; 99.8 1.5E-17 3.3E-22 163.7 16.5 163 45-254 42-212 (263)
14 PF03372 Exo_endo_phos: Endonu 99.7 3.2E-16 7E-21 149.9 15.5 150 81-242 17-171 (249)
15 PTZ00297 pantothenate kinase; 99.7 1.1E-15 2.4E-20 178.5 21.2 170 43-239 7-207 (1452)
16 smart00476 DNaseIc deoxyribonu 99.7 3.6E-15 7.9E-20 146.2 18.7 169 46-248 17-200 (276)
17 KOG2756 Predicted Mg2+-depende 99.5 1.8E-13 3.9E-18 128.7 14.1 206 46-293 99-310 (349)
18 PRK15251 cytolethal distending 99.4 4.5E-12 9.8E-17 122.6 14.9 159 46-248 24-205 (271)
19 COG2374 Predicted extracellula 99.4 1E-11 2.2E-16 131.9 15.4 252 42-306 459-745 (798)
20 cd05022 S-100A13 S-100A13: S-1 99.2 1E-11 2.2E-16 101.0 4.7 66 319-390 5-73 (89)
21 KOG0037 Ca2+-binding protein, 99.1 1.7E-11 3.8E-16 112.8 2.6 105 323-458 58-162 (221)
22 COG5126 FRQ1 Ca2+-binding prot 99.1 1.1E-10 2.4E-15 104.3 6.9 66 319-390 89-154 (160)
23 cd05027 S-100B S-100B: S-100B 99.1 9.7E-11 2.1E-15 95.3 5.5 66 319-390 5-77 (88)
24 KOG0027 Calmodulin and related 99.1 1.3E-10 2.8E-15 104.7 6.9 63 322-390 85-147 (151)
25 KOG0027 Calmodulin and related 99.1 7E-11 1.5E-15 106.5 4.9 113 321-454 7-119 (151)
26 COG3021 Uncharacterized protei 99.1 5.4E-10 1.2E-14 109.2 11.4 195 45-293 87-282 (309)
27 PF13499 EF-hand_7: EF-hand do 99.1 1.2E-10 2.6E-15 89.4 5.4 61 324-390 2-66 (66)
28 KOG0028 Ca2+-binding protein ( 99.0 2.9E-10 6.4E-15 99.5 4.8 114 320-458 31-144 (172)
29 cd05029 S-100A6 S-100A6: S-100 98.9 1.3E-09 2.9E-14 88.6 6.0 68 319-391 7-78 (88)
30 cd05026 S-100Z S-100Z: S-100Z 98.9 1.3E-09 2.9E-14 89.8 5.7 71 318-390 6-79 (93)
31 COG5126 FRQ1 Ca2+-binding prot 98.9 6.6E-10 1.4E-14 99.4 3.8 114 318-457 16-129 (160)
32 cd05031 S-100A10_like S-100A10 98.9 1.7E-09 3.6E-14 89.4 5.3 64 321-390 7-77 (94)
33 cd05025 S-100A1 S-100A1: S-100 98.9 1.8E-09 3.9E-14 88.8 5.3 70 319-390 6-78 (92)
34 KOG0028 Ca2+-binding protein ( 98.9 4.2E-09 9.2E-14 92.3 6.5 67 318-390 102-168 (172)
35 PF13833 EF-hand_8: EF-hand do 98.9 7.1E-09 1.5E-13 76.2 6.9 48 338-390 3-51 (54)
36 smart00027 EH Eps15 homology d 98.8 9.2E-09 2E-13 85.3 6.3 63 320-390 8-70 (96)
37 cd00052 EH Eps15 homology doma 98.8 1.3E-08 2.8E-13 78.0 6.1 58 325-390 2-59 (67)
38 cd00213 S-100 S-100: S-100 dom 98.7 1.6E-08 3.4E-13 82.4 5.5 69 320-390 6-77 (88)
39 cd05023 S-100A11 S-100A11: S-1 98.7 2.5E-08 5.4E-13 81.3 6.2 67 319-390 6-78 (89)
40 smart00128 IPPc Inositol polyp 98.6 7E-07 1.5E-11 89.9 14.0 135 92-240 37-194 (310)
41 cd00051 EFh EF-hand, calcium b 98.6 1.2E-07 2.5E-12 70.4 6.0 60 324-389 2-61 (63)
42 PTZ00184 calmodulin; Provision 98.6 3.1E-08 6.8E-13 88.0 3.0 111 321-456 10-120 (149)
43 PF14658 EF-hand_9: EF-hand do 98.5 2.9E-07 6.3E-12 69.6 7.2 60 326-390 2-62 (66)
44 PTZ00183 centrin; Provisional 98.5 9.5E-08 2.1E-12 86.0 4.6 109 322-455 17-125 (158)
45 KOG0036 Predicted mitochondria 98.5 1.1E-07 2.4E-12 95.1 4.6 108 319-456 11-118 (463)
46 PTZ00184 calmodulin; Provision 98.4 4E-07 8.6E-12 80.9 6.9 63 322-390 84-146 (149)
47 KOG0037 Ca2+-binding protein, 98.4 6.9E-07 1.5E-11 82.7 8.1 69 323-397 125-193 (221)
48 cd05030 calgranulins Calgranul 98.4 3.1E-07 6.7E-12 74.8 5.2 65 320-390 6-77 (88)
49 PTZ00183 centrin; Provisional 98.4 4.6E-07 1E-11 81.5 6.8 63 322-390 90-152 (158)
50 KOG0031 Myosin regulatory ligh 98.4 5.9E-07 1.3E-11 78.4 6.7 86 297-390 78-163 (171)
51 KOG0030 Myosin essential light 98.4 6.6E-07 1.4E-11 76.8 6.2 60 323-389 89-148 (152)
52 KOG0041 Predicted Ca2+-binding 98.4 9.5E-07 2.1E-11 80.3 7.3 99 296-411 81-179 (244)
53 KOG0034 Ca2+/calmodulin-depend 98.3 7E-07 1.5E-11 82.7 5.2 63 322-390 104-173 (187)
54 cd00252 SPARC_EC SPARC_EC; ext 98.3 6.8E-07 1.5E-11 76.4 4.7 59 322-390 48-106 (116)
55 KOG0030 Myosin essential light 98.3 4.3E-07 9.3E-12 78.0 3.3 112 322-456 11-124 (152)
56 KOG0031 Myosin regulatory ligh 98.3 1.1E-06 2.3E-11 76.8 5.1 108 318-454 28-135 (171)
57 PF00036 EF-hand_1: EF hand; 98.1 5.3E-06 1.2E-10 52.6 3.8 26 365-390 1-26 (29)
58 PLN02964 phosphatidylserine de 98.0 4.9E-06 1.1E-10 90.4 5.6 59 322-390 143-205 (644)
59 KOG0036 Predicted mitochondria 98.0 9.1E-06 2E-10 81.7 6.8 67 318-390 78-144 (463)
60 cd05024 S-100A10 S-100A10: A s 97.9 1.6E-05 3.4E-10 64.5 5.2 65 322-390 8-74 (91)
61 KOG0038 Ca2+-binding kinase in 97.9 4.3E-05 9.3E-10 66.2 7.4 64 322-390 108-175 (189)
62 KOG0377 Protein serine/threoni 97.9 4E-05 8.6E-10 77.5 7.6 68 318-388 543-611 (631)
63 PF00036 EF-hand_1: EF hand; 97.7 1.4E-05 3E-10 50.7 1.6 28 324-352 2-29 (29)
64 PLN02964 phosphatidylserine de 97.7 3.6E-05 7.7E-10 83.8 5.7 61 324-390 181-241 (644)
65 KOG0044 Ca2+ sensor (EF-Hand s 97.7 9.5E-05 2.1E-09 68.7 7.4 92 295-390 76-173 (193)
66 PF12763 EF-hand_4: Cytoskelet 97.7 0.00011 2.5E-09 61.5 6.5 61 322-391 10-70 (104)
67 PF14788 EF-hand_10: EF hand; 97.5 0.00034 7.4E-09 50.0 6.2 46 339-389 1-46 (51)
68 PF13405 EF-hand_6: EF-hand do 97.5 5.1E-05 1.1E-09 48.8 1.6 29 324-353 2-31 (31)
69 PF13202 EF-hand_5: EF hand; P 97.3 0.00029 6.4E-09 42.9 3.6 24 366-389 1-24 (25)
70 KOG0566 Inositol-1,4,5-triphos 97.3 0.0023 5E-08 70.7 12.1 105 134-250 627-740 (1080)
71 KOG0044 Ca2+ sensor (EF-Hand s 97.3 0.00038 8.2E-09 64.7 5.1 70 322-397 64-133 (193)
72 KOG0046 Ca2+-binding actin-bun 97.1 0.0008 1.7E-08 69.8 5.8 78 319-400 16-93 (627)
73 PRK12309 transaldolase/EF-hand 97.0 0.00072 1.6E-08 69.9 4.7 49 323-390 335-383 (391)
74 KOG4065 Uncharacterized conser 96.9 0.0025 5.4E-08 53.2 6.4 60 327-387 72-140 (144)
75 KOG4223 Reticulocalbin, calume 96.8 0.0014 3.1E-08 64.5 4.4 106 312-424 66-172 (325)
76 KOG4223 Reticulocalbin, calume 96.8 0.0019 4.2E-08 63.5 5.3 57 326-390 167-226 (325)
77 PF13202 EF-hand_5: EF hand; P 96.7 0.00076 1.6E-08 41.1 1.4 24 325-349 2-25 (25)
78 PF13405 EF-hand_6: EF-hand do 96.6 0.0029 6.3E-08 40.5 3.6 26 365-390 1-26 (31)
79 PF14529 Exo_endo_phos_2: Endo 96.4 0.0051 1.1E-07 52.2 5.2 87 186-296 1-99 (119)
80 PF10591 SPARC_Ca_bdg: Secrete 96.2 0.0011 2.4E-08 56.5 -0.1 56 325-388 57-112 (113)
81 KOG2643 Ca2+ binding protein, 96.2 0.0098 2.1E-07 60.8 6.4 96 287-390 204-312 (489)
82 KOG0034 Ca2+/calmodulin-depend 95.9 0.014 3.1E-07 54.1 5.7 103 324-444 68-171 (187)
83 KOG0040 Ca2+-binding actin-bun 95.5 0.01 2.3E-07 68.2 3.7 83 322-413 2253-2342(2399)
84 smart00054 EFh EF-hand, calciu 95.2 0.022 4.8E-07 34.3 3.0 26 365-390 1-26 (29)
85 KOG1294 Apurinic/apyrimidinic 95.0 0.11 2.4E-06 52.6 9.0 187 87-295 84-307 (335)
86 PF13499 EF-hand_7: EF-hand do 95.0 0.092 2E-06 39.6 6.4 26 366-391 2-27 (66)
87 KOG0377 Protein serine/threoni 94.7 0.097 2.1E-06 53.7 7.3 109 318-444 460-611 (631)
88 PLN03191 Type I inositol-1,4,5 94.6 0.2 4.3E-06 54.1 9.7 57 182-239 418-481 (621)
89 smart00054 EFh EF-hand, calciu 94.3 0.028 6.1E-07 33.8 1.7 27 324-351 2-28 (29)
90 KOG2243 Ca2+ release channel ( 93.7 0.12 2.7E-06 58.9 6.3 78 306-390 4041-4118(5019)
91 KOG4251 Calcium binding protei 93.6 0.033 7.2E-07 52.7 1.4 63 323-389 102-165 (362)
92 PTZ00312 inositol-1,4,5-tripho 92.6 0.33 7.1E-06 47.6 6.6 60 182-245 78-146 (356)
93 KOG0042 Glycerol-3-phosphate d 92.2 0.21 4.5E-06 53.1 5.1 68 324-397 595-662 (680)
94 PF13833 EF-hand_8: EF-hand do 92.1 0.15 3.3E-06 36.8 3.0 29 322-351 25-53 (54)
95 KOG1029 Endocytic adaptor prot 91.8 0.15 3.3E-06 55.5 3.7 69 320-396 193-261 (1118)
96 PF09279 EF-hand_like: Phospho 90.7 0.27 5.9E-06 39.1 3.3 62 324-390 2-67 (83)
97 smart00027 EH Eps15 homology d 90.0 0.26 5.7E-06 40.4 2.8 30 361-390 4-36 (96)
98 KOG0751 Mitochondrial aspartat 88.8 0.55 1.2E-05 49.0 4.5 119 314-465 100-219 (694)
99 KOG2643 Ca2+ binding protein, 88.4 0.18 4E-06 51.8 0.9 57 327-390 394-451 (489)
100 PF05517 p25-alpha: p25-alpha 88.1 1.6 3.6E-05 39.2 6.8 52 338-391 17-68 (154)
101 COG5239 CCR4 mRNA deadenylase, 86.9 0.34 7.3E-06 48.9 1.6 58 185-248 139-196 (378)
102 KOG2562 Protein phosphatase 2 86.3 1.7 3.7E-05 45.3 6.4 109 276-388 303-420 (493)
103 COG5411 Phosphatidylinositol 5 85.0 6.6 0.00014 40.9 9.8 54 183-238 164-217 (460)
104 KOG4666 Predicted phosphate ac 84.9 0.71 1.5E-05 45.8 2.8 60 323-390 297-357 (412)
105 KOG4578 Uncharacterized conser 83.8 2.9 6.3E-05 41.6 6.4 97 286-390 283-396 (421)
106 KOG1976 Inositol polyphosphate 83.6 2 4.3E-05 42.3 5.2 64 182-249 167-240 (391)
107 cd05027 S-100B S-100B: S-100B 83.0 3.5 7.6E-05 33.3 5.7 26 365-390 9-36 (88)
108 KOG3866 DNA-binding protein of 82.5 2.1 4.6E-05 42.2 4.9 69 319-388 241-320 (442)
109 cd05022 S-100A13 S-100A13: S-1 81.8 4.5 9.7E-05 32.8 5.9 26 365-390 9-35 (89)
110 cd00051 EFh EF-hand, calcium b 81.8 1.3 2.9E-05 31.5 2.6 25 366-390 2-26 (63)
111 PF05042 Caleosin: Caleosin re 79.8 5.4 0.00012 36.3 6.2 67 323-390 8-122 (174)
112 KOG3555 Ca2+-binding proteogly 79.6 1.8 4E-05 43.3 3.4 56 325-390 253-308 (434)
113 PF08726 EFhand_Ca_insen: Ca2+ 79.1 0.58 1.3E-05 36.0 -0.2 52 322-387 6-64 (69)
114 cd05026 S-100Z S-100Z: S-100Z 77.5 1.3 2.8E-05 36.1 1.5 32 322-354 53-84 (93)
115 cd00052 EH Eps15 homology doma 76.3 2.7 5.8E-05 31.2 2.9 24 367-390 2-25 (67)
116 KOG1955 Ral-GTPase effector RA 74.6 3.5 7.6E-05 43.2 3.9 62 321-390 230-291 (737)
117 cd00213 S-100 S-100: S-100 dom 74.0 3.5 7.6E-05 32.9 3.1 27 364-390 8-36 (88)
118 KOG2562 Protein phosphatase 2 73.8 3.4 7.4E-05 43.1 3.6 58 324-390 280-341 (493)
119 cd05023 S-100A11 S-100A11: S-1 72.8 2.1 4.5E-05 34.7 1.5 32 322-354 52-83 (89)
120 cd05024 S-100A10 S-100A10: A s 72.6 3.5 7.7E-05 33.5 2.8 33 321-354 47-79 (91)
121 cd05025 S-100A1 S-100A1: S-100 72.4 4.8 0.0001 32.5 3.6 27 364-390 9-37 (92)
122 cd05031 S-100A10_like S-100A10 72.0 1.5 3.3E-05 35.7 0.6 32 322-354 51-82 (94)
123 PF08976 DUF1880: Domain of un 71.1 3.7 7.9E-05 34.8 2.6 28 360-387 3-30 (118)
124 cd00252 SPARC_EC SPARC_EC; ext 70.9 4 8.7E-05 34.9 2.9 30 360-389 44-73 (116)
125 PRK12309 transaldolase/EF-hand 69.6 12 0.00025 39.1 6.5 28 360-387 330-357 (391)
126 KOG4251 Calcium binding protei 69.3 5.1 0.00011 38.3 3.4 54 329-388 288-341 (362)
127 cd05030 calgranulins Calgranul 68.9 2.9 6.2E-05 33.7 1.5 33 321-354 50-82 (88)
128 cd05029 S-100A6 S-100A6: S-100 67.8 3 6.6E-05 33.7 1.4 32 322-354 51-82 (88)
129 PF14788 EF-hand_10: EF hand; 65.3 7.1 0.00015 28.1 2.7 29 323-352 22-50 (51)
130 KOG0035 Ca2+-binding actin-bun 65.1 11 0.00024 42.9 5.5 63 322-390 747-814 (890)
131 KOG0041 Predicted Ca2+-binding 62.2 9.2 0.0002 35.7 3.6 28 365-392 100-127 (244)
132 KOG0169 Phosphoinositide-speci 58.8 10 0.00022 42.2 3.8 67 322-394 136-202 (746)
133 KOG1029 Endocytic adaptor prot 57.2 17 0.00036 40.5 5.0 55 327-390 21-75 (1118)
134 PF14513 DAG_kinase_N: Diacylg 56.4 25 0.00054 31.0 5.2 47 338-391 6-59 (138)
135 KOG0998 Synaptic vesicle prote 48.5 3.8 8.3E-05 47.0 -1.5 61 322-390 283-343 (847)
136 KOG0808 Carbon-nitrogen hydrol 47.5 17 0.00036 35.3 2.8 24 80-103 100-123 (387)
137 PF12763 EF-hand_4: Cytoskelet 43.8 14 0.0003 30.9 1.5 30 322-352 43-72 (104)
138 KOG0751 Mitochondrial aspartat 41.6 47 0.001 35.3 5.2 53 330-390 82-134 (694)
139 KOG0038 Ca2+-binding kinase in 41.3 62 0.0013 28.7 5.1 58 326-390 75-134 (189)
140 KOG2871 Uncharacterized conser 38.1 21 0.00044 36.5 2.0 62 320-387 307-369 (449)
141 PF03672 UPF0154: Uncharacteri 37.2 54 0.0012 24.8 3.6 31 338-373 30-60 (64)
142 KOG4666 Predicted phosphate ac 34.3 56 0.0012 32.9 4.3 59 323-387 260-319 (412)
143 PRK00523 hypothetical protein; 33.4 66 0.0014 24.9 3.6 32 338-374 38-69 (72)
144 PF14658 EF-hand_9: EF-hand do 33.2 29 0.00062 26.5 1.7 30 322-351 35-64 (66)
145 KOG1707 Predicted Ras related/ 32.7 21 0.00045 38.7 1.1 57 324-390 317-375 (625)
146 KOG4347 GTPase-activating prot 30.7 38 0.00083 37.1 2.7 58 322-386 555-612 (671)
147 PF08461 HTH_12: Ribonuclease 30.5 59 0.0013 24.6 3.0 35 338-377 12-46 (66)
148 PF00404 Dockerin_1: Dockerin 29.2 64 0.0014 18.7 2.3 14 374-387 1-14 (21)
149 COG3763 Uncharacterized protei 27.3 1E+02 0.0022 23.7 3.7 35 333-374 34-68 (71)
150 cd07313 terB_like_2 tellurium 27.1 1.8E+02 0.004 23.5 5.8 48 338-388 14-61 (104)
151 PF07499 RuvA_C: RuvA, C-termi 26.7 1E+02 0.0023 21.4 3.5 37 342-387 3-39 (47)
152 PF14164 YqzH: YqzH-like prote 26.6 1.1E+02 0.0023 23.2 3.7 30 344-373 9-38 (64)
153 PRK01844 hypothetical protein; 26.0 1E+02 0.0022 23.9 3.5 30 339-373 38-67 (72)
154 PF09107 SelB-wing_3: Elongati 25.0 1E+02 0.0022 22.0 3.2 30 338-377 9-38 (50)
155 PF03979 Sigma70_r1_1: Sigma-7 24.9 66 0.0014 25.4 2.5 33 338-377 20-52 (82)
156 PF01885 PTS_2-RNA: RNA 2'-pho 24.4 1.1E+02 0.0024 28.3 4.3 38 332-375 26-63 (186)
157 TIGR02675 tape_meas_nterm tape 24.0 82 0.0018 24.5 2.8 43 338-386 29-75 (75)
158 PRK11756 exonuclease III; Prov 22.7 50 0.0011 32.1 1.8 27 453-485 241-267 (268)
159 KOG0565 Inositol polyphosphate 22.3 89 0.0019 27.4 3.1 60 182-243 57-124 (145)
160 COG4103 Uncharacterized protei 22.1 1.7E+02 0.0036 26.0 4.6 80 327-426 35-114 (148)
161 COG0708 XthA Exonuclease III [ 22.0 49 0.0011 32.5 1.5 11 475-485 250-260 (261)
162 KOG0040 Ca2+-binding actin-bun 21.5 85 0.0018 38.1 3.4 31 360-390 2246-2279(2399)
163 PTZ00373 60S Acidic ribosomal 21.2 2.2E+02 0.0048 24.1 5.1 49 328-387 9-57 (112)
164 PF11165 DUF2949: Protein of u 21.1 3.6E+02 0.0077 20.0 5.5 34 361-394 15-57 (58)
165 PF01023 S_100: S-100/ICaBP ty 21.0 67 0.0015 22.3 1.6 28 324-351 8-36 (44)
166 KOG3449 60S acidic ribosomal p 20.7 1.1E+02 0.0024 25.7 3.0 51 326-387 5-55 (112)
167 PRK00819 RNA 2'-phosphotransfe 20.5 1.6E+02 0.0035 27.1 4.5 44 332-384 27-70 (179)
168 KOG1954 Endocytosis/signaling 20.2 1.1E+02 0.0024 31.7 3.5 55 324-387 446-500 (532)
No 1
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=100.00 E-value=1.7e-39 Score=327.80 Aligned_cols=371 Identities=32% Similarity=0.359 Sum_probs=272.5
Q ss_pred cEEEEeeccccccccCCcccCccccCCCCcCChHHHHHHHHHHHhhCCCcEEEEeeeccCchhHHHHHHHhhccCCccEE
Q 011119 46 CISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTF 125 (493)
Q Consensus 46 ~lrVmTyNI~~~~y~~~~~~~~~~~~~~~~~~w~~R~~~I~~~I~~~~pDIIcLQEV~~~~~~~~~~l~~~l~~~gY~~~ 125 (493)
.|+||||||+++.+.+......+ ..+...+.|..|...|+.+|..++|||+|||||+ .+++...+++.+...||..+
T Consensus 116 ~ftvmSYNILAQ~l~~~~~r~~~-~~s~~~L~W~~R~~~Ll~EL~~~dpDIlCLQEVq--~d~~~~~~~~~~~~lGy~~~ 192 (495)
T KOG2338|consen 116 DFTVMSYNILAQDLLRDIRRLYF-PESGPALKWLRRSQNLLNELKHYDPDVLCLQEVQ--EDHYPEFWQPLLGKLGYTGF 192 (495)
T ss_pred ceEEEEehHhHHHHHHHhHHhhc-cCChhhcchhHHhHHHHHHHhhcCCCeeeehhhh--hhhhHHHHHHHHhhcCceEE
Confidence 79999999999988442222212 2567789999999999999999999999999996 45677888999999999999
Q ss_pred EeecCCCCCceEEEEEecCCceEEeeeeeecCccC------CceeEEEEEeeecccccccCCCCceEEEEEeeecCCCCC
Q 011119 126 SLARTNNRGDGLLTALHRDYFNVLNYRELLFNDFG------DRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDS 199 (493)
Q Consensus 126 ~~~~~~~~~~G~aIl~r~s~f~i~~~~~i~~~~~~------~r~~~~~~~~~~~~~~~~~~~~g~~v~V~ntHL~~~~~~ 199 (493)
+..+++.+.+||||+|+.++|+++....+.+.+.. ++++.++.++... ....++.|+|+||||.|+|
T Consensus 193 ~~r~t~~KthG~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~-----~~~~sq~ilVanTHLl~np-- 265 (495)
T KOG2338|consen 193 FKRRTGTKTHGVAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRL-----VDESSQGILVANTHLLFNP-- 265 (495)
T ss_pred EEeccCCCCceEEEEEecccceecccchhhcccccchhhcccceeEEEEEEecc-----cCcccCceEEEeeeeeecC--
Confidence 99888889999999999999999999999887654 3455555444321 1113679999999999987
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEecCCCCCCchhhHHHHhCCceecccccCCCCCCCCCcccccccCCC
Q 011119 200 SLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDVAHQYTDGDADAHKWVSHRNH 279 (493)
Q Consensus 200 ~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~PvIL~GDFN~~p~s~~~~~L~~~G~~~s~~~~~~~~~~~~~~~~w~s~~~~ 279 (493)
..+++|++|.+.|++.++++....+ .+.|+|+|||||+.|.++.|.+|++.++.-..+.++. ..+...|..+ ++
T Consensus 266 ~~~~vrL~Q~~iiL~~~~~~~~~~~-~~~pi~l~GDfNt~p~~~~y~fl~~~~l~~~~~~~~~----~e~s~~~~~~-~~ 339 (495)
T KOG2338|consen 266 SRSDVRLAQVYIILAELEKMSKSSK-SHWPIFLCGDFNTEPDSPPYLFLTSGPLIYDGRAAHT----IEDSHRYVFS-ES 339 (495)
T ss_pred cccchhhHHHHHHHHHHHHHHhhcc-cCCCeEEecCCCCCCCCCcchhhhcCCceeccccccc----cccccccccc-cc
Confidence 6679999999999999999988654 6889999999999999999999988888765555541 1344445544 22
Q ss_pred CCCcccccceeccCCCCCCCccchhhHHHHHHHHhhhhhhcccccccccccc-ccCCCCcceeHHHHHHHHHHhhcCCCC
Q 011119 280 RGNICGVDFIWLRNPNQSRKPLQASWAEAVFSIIKCQLQKASLAENDAFAFF-KADNNGDVITHSAFCEALRQVNLAGLP 358 (493)
Q Consensus 280 ~~~~~~iD~Ifl~~~~~~~~p~~Ts~~e~~l~~id~il~~~~~~~~~~F~~~-D~d~~~G~I~~~el~~~l~~lg~~g~~ 358 (493)
+...++.| ..|..+...+.++.+........++|... |++.. -..++.|+......++..+|.
T Consensus 340 ~~ge~g~d---------------~~~~~~~~s~~k~~~~~~s~~~~e~~t~~g~~~~~-~~~~~~~h~~~~~~~s~~s~g 403 (495)
T KOG2338|consen 340 RLGEEGED---------------DEEESAAFSRGKGQLSQASIPKPEIFTATGDKNHL-VELTYSEHESLKVNVSLYSHG 403 (495)
T ss_pred ccCccccc---------------chhhhhhhccCccccccccCCCccccccccccchh-HHHHHHHhhhhhcccceeecc
Confidence 22223332 12666666666666655555555666554 33333 356677777733334444444
Q ss_pred CCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhcccCCCCCC
Q 011119 359 YGLSFQETDDLWAQADVDGNGVVNYEEFKVHAYFLSKLLIISFVCQWCLESMLKLLALQQRMWNLSCSAQIENNCNDNME 438 (493)
Q Consensus 359 ~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (493)
|++. ..+..+. |.++.|..+|..-. ..|....+........++.
T Consensus 404 ~~~~--~~~~~~~--~~gep~vt~~~~~~-------------------------------~g~~dyif~~~~~~~~~~~- 447 (495)
T KOG2338|consen 404 YGLV--HTENAWL--DRGEPGVTNYALTW-------------------------------KGTLDYIFYSPGDCKQSNR- 447 (495)
T ss_pred cccc--chhhccc--cCCCcceecHHhhh-------------------------------ccceeeEEeccCcccccch-
Confidence 4444 3444443 88899999998776 5666555544333333333
Q ss_pred CCcccccccccceeecccccCchhhhcCCCCCC-CCCCCCCCeeEEeecc
Q 011119 439 DSKDCSEKEILGFAVKDAFLFPSEVEKGKWPEN-YSLSDHAPLSVVFSPV 487 (493)
Q Consensus 439 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 487 (493)
.-...+.+++.+--++++|.|+.|+-||.| +--|||..|+++|+++
T Consensus 448 ---~~~~~~~ikl~~~l~ip~~~e~~k~~~p~~~~~~SDH~aL~~~~~~~ 494 (495)
T KOG2338|consen 448 ---EFEEDEAIKLKGLLRIPSPQEMWKAGQPPNGRYGSDHIALVAQFSLV 494 (495)
T ss_pred ---hhhcccceeEEEEecCCCHHHhhccCCCCCCCCcccceEeeEeeEee
Confidence 122355788999999999999999999999 8889999999999987
No 2
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=100.00 E-value=4.8e-35 Score=310.79 Aligned_cols=279 Identities=23% Similarity=0.333 Sum_probs=192.7
Q ss_pred CCCcEEEEeeccccccccCCcccCccccCCCCcCChHHHHHHHHHHHhhCCCcEEEEeeeccCchhHHHHHHHhhccCCc
Q 011119 43 GECCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGY 122 (493)
Q Consensus 43 ~~~~lrVmTyNI~~~~y~~~~~~~~~~~~~~~~~~w~~R~~~I~~~I~~~~pDIIcLQEV~~~~~~~~~~l~~~l~~~gY 122 (493)
...+||||||||+++.|++.+. ..|| +++.+.|.+|++.|+++|..++|||||||||+ ...+.+++...|...||
T Consensus 251 ~~~~frVmSYNILAd~ya~~dl-y~yc--p~~aL~W~yRk~lIl~EI~~~~aDIICLQEV~--~~~~~d~~~p~L~~~GY 325 (606)
T PLN03144 251 SAGTFTVLSYNILSDLYATSDM-YSYC--PPWALSWTYRRQNLLREIVGYRADILCLQEVQ--SDHFEEFFAPELDKHGY 325 (606)
T ss_pred CCCCEEEEEeeeccccccCccc-ccCC--CccccCHHHHHHHHHHHHHhcCCCEEEEeecC--HHHHHHHHHhhhhhcCc
Confidence 3468999999999999988664 3566 66789999999999999999999999999994 55677788889999999
Q ss_pred cEEEeecCCC-------CCceEEEEEecCCceEEeeeeeecCccC----------------------CceeEEEEEeeec
Q 011119 123 NTFSLARTNN-------RGDGLLTALHRDYFNVLNYRELLFNDFG----------------------DRVAQLVHVESVV 173 (493)
Q Consensus 123 ~~~~~~~~~~-------~~~G~aIl~r~s~f~i~~~~~i~~~~~~----------------------~r~~~~~~~~~~~ 173 (493)
.++|..+++. ..+|+|||||+++|.+++...+.|+... ++++.++.++...
T Consensus 326 ~Gv~~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~~lslt~~~~~s~~~~~~l~Rl~kdNVAliv~Le~k~ 405 (606)
T PLN03144 326 QALYKKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKAAQSLTEALIPSAQKKAALNRLLKDNVALIVVLEAKF 405 (606)
T ss_pred eEEEeCCCCccccccccCCceeEEEEECcceEEEEeeeeeccchhhccCccccccccchhhhhhhccCcEEEEEEEEEec
Confidence 9999887653 4799999999999999999887665321 1244444444321
Q ss_pred ccccc-cCCCCceEEEEEeeecCCCCCCchHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEecCCCCCCchhhHHHHhCC
Q 011119 174 PFFQN-QGGGQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQG 252 (493)
Q Consensus 174 ~~~~~-~~~~g~~v~V~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~PvIL~GDFN~~p~s~~~~~L~~~G 252 (493)
..... ....++.|+|+||||+|.| ...++|+.|++.|++.++++... .+.|+|||||||+.|++++|++| +.|
T Consensus 406 ~~~~~~~~~~~~~l~VaNTHL~~~p--~~~dvRl~Q~~~Ll~~l~~~~~~---~~~PvIlcGDFNS~P~S~vy~lL-t~G 479 (606)
T PLN03144 406 GNQGADNGGKRQLLCVANTHIHANQ--ELKDVKLWQVHTLLKGLEKIAAS---ADIPMLVCGDFNSVPGSAPHCLL-ATG 479 (606)
T ss_pred ccccccCCCCccEEEEEEeeeccCC--ccchhHHHHHHHHHHHHHHHhhc---CCCceEEeccCCCCCCChhhhhh-hcC
Confidence 10000 0113468999999999977 45689999999999999988643 37899999999999999999999 566
Q ss_pred ceecccccCCCCCCC--------CCcccccccCCCC----CCcccccceeccCCCCCCCccchhhHHHHHHHHhhhhhh-
Q 011119 253 FVSSYDVAHQYTDGD--------ADAHKWVSHRNHR----GNICGVDFIWLRNPNQSRKPLQASWAEAVFSIIKCQLQK- 319 (493)
Q Consensus 253 ~~~s~~~~~~~~~~~--------~~~~~w~s~~~~~----~~~~~iD~Ifl~~~~~~~~p~~Ts~~e~~l~~id~il~~- 319 (493)
.++.........+.+ .....+.|.+.+. |....+..+-.+-...+++|.||+|+..|.+++||++..
T Consensus 480 ~v~~~h~d~~~~~~~~~~~~~~l~H~~~L~SAY~~~~~~~g~~~~~~~~~~r~~~~~geP~fTNyt~~F~gtlDYIfys~ 559 (606)
T PLN03144 480 KVDPLHPDLAVDPLGILRPASKLTHQLPLVSAYSSFARMPGSGSGLEQQRRRMDPATNEPLFTNCTRDFIGTLDYIFYTA 559 (606)
T ss_pred CcCCCchhhccCccccccccccccCCCcccchhhhhccccccccchhhhhhccccccCCCCceeecCCcceeEEEEEEcC
Confidence 654321100000000 1122333333221 000000000000001257899999999999999999944
Q ss_pred ccccccccccccc
Q 011119 320 ASLAENDAFAFFK 332 (493)
Q Consensus 320 ~~~~~~~~F~~~D 332 (493)
..+.+..+....|
T Consensus 560 ~~L~v~~vL~lp~ 572 (606)
T PLN03144 560 DSLTVESLLELLD 572 (606)
T ss_pred CCceEEeecCCCC
Confidence 3445544444443
No 3
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=99.91 E-value=3.8e-24 Score=208.52 Aligned_cols=268 Identities=18% Similarity=0.260 Sum_probs=177.1
Q ss_pred cEEEEeeccccccccCCcccCccccCCCCcCChHHHHHHHHHHHhhCCCcEEEEeeeccCchhHHHHHHHhhccCCccEE
Q 011119 46 CISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTF 125 (493)
Q Consensus 46 ~lrVmTyNI~~~~y~~~~~~~~~~~~~~~~~~w~~R~~~I~~~I~~~~pDIIcLQEV~~~~~~~~~~l~~~l~~~gY~~~ 125 (493)
.|+|||||++++.|+++..+. .+.+.+.|.+|.+.|+.+|..++|||+|||||+ ...+.++++..|...||..+
T Consensus 30 ~ftimTYN~Laq~y~~r~~y~----~s~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd--~~~~~~fw~~~l~~~gY~~i 103 (378)
T COG5239 30 DFTIMTYNVLAQTYATRKMYP----YSGWALKWSYRSRLLLQELLYYNADILCLQEVD--AEDFEDFWKDQLGKLGYDGI 103 (378)
T ss_pred eeEEEehhhhhhhhccccccC----CchhhhhhHHHHHHHHHHHhccCCceeeeehhh--hhHHHHHHHHHhcccccceE
Confidence 699999999999999988753 234679999999999999999999999999996 45678899999999999999
Q ss_pred EeecCCC----------CCceEEEEEec----CCceEEeeeeeecCccC-------------CceeEEEEEe--eecccc
Q 011119 126 SLARTNN----------RGDGLLTALHR----DYFNVLNYRELLFNDFG-------------DRVAQLVHVE--SVVPFF 176 (493)
Q Consensus 126 ~~~~~~~----------~~~G~aIl~r~----s~f~i~~~~~i~~~~~~-------------~r~~~~~~~~--~~~~~~ 176 (493)
+.++.++ ..+||+|++++ |++-++-.....|.... +++.....+. ..+...
T Consensus 104 f~~k~~k~~~m~~~d~t~~dGc~if~k~~~~~sk~~li~~~~~~f~~p~~~~er~r~t~~~lnri~e~~~~~w~~l~~~l 183 (378)
T COG5239 104 FIPKERKVKWMIDYDTTKVDGCAIFLKRFIDSSKLGLILAVTHLFWHPYGYYERFRQTYILLNRIGEKDNIAWVCLFVGL 183 (378)
T ss_pred EecCCCcccccccccccccceEEEEEEeccccchhhhhhhhhHhhcccceeehhhhHHHHHHHHHhhhhhcchhheeeee
Confidence 9887651 36899999988 44222221111111000 1111111111 111111
Q ss_pred cccCCCCceEEEEEeeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcc-----------CCCCCEEEEecCCCCCCchhh
Q 011119 177 QNQGGGQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENK-----------LNHIPIILCGDWNGSKRGHVY 245 (493)
Q Consensus 177 ~~~~~~g~~v~V~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~-----------~~~~PvIL~GDFN~~p~s~~~ 245 (493)
..+.+|.++.|+|||++|.| .+.++++-|+..+++++++...+.. .+..++++|||||+.-.+.+|
T Consensus 184 -~n~e~gd~~~va~Th~~w~~--~~~dvk~iq~s~l~~~~k~~~~e~~~~d~~~~d~k~~~~~~~l~~gd~ns~~~s~vy 260 (378)
T COG5239 184 -FNKEPGDTPYVANTHLPWDP--KYRDVKLIQCSLLYRELKKVLKEELNDDKEEGDIKSYPEVDILITGDFNSLRASLVY 260 (378)
T ss_pred -ccCCCCCceeEEeccccccC--CCCchheehhhHHHHHHHHHhhhcCCcchhccccccCcccccccCCCccceecceeh
Confidence 11338999999999999966 5668899999999999888765431 223478999999999999999
Q ss_pred HHHHhCCceecccccCCCCCCCCCcccccccCCCCCCcccccceeccCCCCCCCccchhhHHHHHHHHhhhhhhcc--cc
Q 011119 246 KFLRSQGFVSSYDVAHQYTDGDADAHKWVSHRNHRGNICGVDFIWLRNPNQSRKPLQASWAEAVFSIIKCQLQKAS--LA 323 (493)
Q Consensus 246 ~~L~~~G~~~s~~~~~~~~~~~~~~~~w~s~~~~~~~~~~iD~Ifl~~~~~~~~p~~Ts~~e~~l~~id~il~~~~--~~ 323 (493)
++|.+ +++...+..+ ......++......-.+. +...+..+.+.+|+|...+.+.+||++.-.. ..
T Consensus 261 ~~l~~-~~~q~H~~~~------~~~~~lysvg~~~~h~~n-----~~~~~~~~~~~fTN~t~~~kG~iDYIfy~~~~~~~ 328 (378)
T COG5239 261 KFLVT-SQIQLHESLN------GRDFSLYSVGYKFVHPEN-----LKSDNSKGELGFTNWTPGFKGVIDYIFYHGGLLTR 328 (378)
T ss_pred hhhhh-HHHHhhhccc------ccchhhhcccccccChhh-----cccCCCcCCcccccccccccceeEEEEEecCccee
Confidence 99954 3333222111 111122222110000001 1113557889999999999999999994333 33
Q ss_pred ccccccccccC
Q 011119 324 ENDAFAFFKAD 334 (493)
Q Consensus 324 ~~~~F~~~D~d 334 (493)
.......+|.+
T Consensus 329 ~~~~l~~ve~e 339 (378)
T COG5239 329 QTGLLGVVEGE 339 (378)
T ss_pred eeccccccccc
Confidence 44444444443
No 4
>PRK11756 exonuclease III; Provisional
Probab=99.89 E-value=6.6e-22 Score=195.32 Aligned_cols=203 Identities=18% Similarity=0.214 Sum_probs=127.8
Q ss_pred EEEEeeccccccccCCcccCccccCCCCcCChHHHHHHHHHHHhhCCCcEEEEeeeccCchhHHHHHHHhhccCCccEEE
Q 011119 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTFS 126 (493)
Q Consensus 47 lrVmTyNI~~~~y~~~~~~~~~~~~~~~~~~w~~R~~~I~~~I~~~~pDIIcLQEV~~~~~~~~~~l~~~l~~~gY~~~~ 126 (493)
||||||||+. +..|...++++|+..+||||||||++.....+. ...+...||.+++
T Consensus 1 mri~T~Nv~g---------------------~~~~~~~i~~~i~~~~pDIi~LQE~~~~~~~~~---~~~~~~~gy~~~~ 56 (268)
T PRK11756 1 MKFVSFNING---------------------LRARPHQLEAIIEKHQPDVIGLQETKVHDEMFP---LEEVEALGYHVFY 56 (268)
T ss_pred CEEEEEEcCC---------------------HHHHHHHHHHHHHhcCCCEEEEEecccccccCC---HHHHHhcCCEEEE
Confidence 6999999975 123677899999999999999999964332211 1223446897776
Q ss_pred eecCCCCCceEEEEEecCCceEEeeeeeecCc-cCCceeEEEEEeeecccccccCCCCceEEEEEeeecCCCCCC---ch
Q 011119 127 LARTNNRGDGLLTALHRDYFNVLNYRELLFND-FGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSS---LS 202 (493)
Q Consensus 127 ~~~~~~~~~G~aIl~r~s~f~i~~~~~i~~~~-~~~r~~~~~~~~~~~~~~~~~~~~g~~v~V~ntHL~~~~~~~---~~ 202 (493)
.. .....|+||++|. ++..... .+.. ..+....++.+... . .+..+.|+|+|+....... ..
T Consensus 57 ~~--~~~~~GvailSr~---p~~~~~~-~~~~~~~~~~~r~l~~~i~-------~-~~g~~~v~n~y~P~~~~~~~~~~~ 122 (268)
T PRK11756 57 HG--QKGHYGVALLSKQ---TPIAVRK-GFPTDDEEAQRRIIMATIP-------T-PNGNLTVINGYFPQGESRDHPTKF 122 (268)
T ss_pred eC--CCCCCEEEEEECC---ChHHeEE-CCCCccccccCCEEEEEEE-------c-CCCCEEEEEEEecCCCCCCcchhH
Confidence 54 2345799999654 4543322 1221 11111222222221 1 2334999999995432111 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCEEEEecCCCCCCch--------------------------hhHHHHhCCceec
Q 011119 203 VVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGH--------------------------VYKFLRSQGFVSS 256 (493)
Q Consensus 203 ~~R~~Q~~~l~~~l~~~~~~~~~~~~PvIL~GDFN~~p~s~--------------------------~~~~L~~~G~~~s 256 (493)
..|..+...|...+.+... .+.|+|||||||..|.+. .++.|.+.||+|+
T Consensus 123 ~~r~~~~~~l~~~l~~~~~----~~~pvIl~GDfN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~l~D~ 198 (268)
T PRK11756 123 PAKRQFYQDLQNYLETELS----PDNPLLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWLDRLMDWGLVDT 198 (268)
T ss_pred HHHHHHHHHHHHHHHHHhc----cCCCEEEEeecccCCChhhcCCcccChHHhcccCCccCCHHHHHHHHHHHhCCcEee
Confidence 2567788888887776533 367999999999987654 4556667799999
Q ss_pred ccccCCCCCCCCCcccccccCCCC---CCcccccceeccCC
Q 011119 257 YDVAHQYTDGDADAHKWVSHRNHR---GNICGVDFIWLRNP 294 (493)
Q Consensus 257 ~~~~~~~~~~~~~~~~w~s~~~~~---~~~~~iD~Ifl~~~ 294 (493)
|+..|+.. ...++|.+.+... ..-.||||||++..
T Consensus 199 ~R~~~p~~---~~~~T~~~~~~~~~~~~~g~RIDyi~~s~~ 236 (268)
T PRK11756 199 FRQLNPDV---NDRFSWFDYRSKGFDDNRGLRIDLILATQP 236 (268)
T ss_pred hhhhCCCC---CCcccCcCCcccccccCCceEEEEEEeCHH
Confidence 99887642 2356787655421 23468999999754
No 5
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.88 E-value=2.9e-21 Score=191.42 Aligned_cols=211 Identities=15% Similarity=0.207 Sum_probs=132.5
Q ss_pred EEEEeeccccccccCCcccCccccCCCCcCChHHHHHHHHHHHhhCCCcEEEEeeeccCchhHHHHHHHhhcc-CCccEE
Q 011119 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGN-AGYNTF 125 (493)
Q Consensus 47 lrVmTyNI~~~~y~~~~~~~~~~~~~~~~~~w~~R~~~I~~~I~~~~pDIIcLQEV~~~~~~~~~~l~~~l~~-~gY~~~ 125 (493)
||||||||+...+. ......|..|..+|...+...+|||||||||+ .....+.+...|+. .+|...
T Consensus 1 lkVmtyNv~~l~~~-----------~~~~~g~~~R~~~i~~~~~~~~~DVV~LQEv~--~~~~~~~l~~~L~~~yp~~~~ 67 (283)
T TIGR03395 1 IKILSHNVYMLSTN-----------LYPNWGQMERADLIASADYIKNQDVVILNEAF--DTSASKRLLDNLREEYPYQTD 67 (283)
T ss_pred CeEEEEEeeeeccc-----------ccCCccHhHHHHHHHHhhcccCCCEEEEeccc--chHHHHHHHHHHHhhCCceEe
Confidence 69999999862111 11234688899999999999999999999995 33333444445532 223221
Q ss_pred EeecC--------------CCCCceEEEEEecCCceEEeeeeeecCccC------CceeEEEEEeeecccccccCCCCce
Q 011119 126 SLART--------------NNRGDGLLTALHRDYFNVLNYRELLFNDFG------DRVAQLVHVESVVPFFQNQGGGQQE 185 (493)
Q Consensus 126 ~~~~~--------------~~~~~G~aIl~r~s~f~i~~~~~i~~~~~~------~r~~~~~~~~~~~~~~~~~~~~g~~ 185 (493)
...+. .....|++|+ |++|++......|+... .+....+.+. .+|+.
T Consensus 68 ~~g~~~~g~~~~~g~~~~~~~~~~G~~iL---Sr~Pi~~~~~~~f~~~~~~d~~~~kg~l~a~i~----------~~g~~ 134 (283)
T TIGR03395 68 VIGRSKKGWDKTLGNYSSSALEDGGVAIV---SKWPIEEKIQYIFNKGCGADNLSNKGFAYVKIN----------KNGKK 134 (283)
T ss_pred ecccccccchhccccccccCccCCEEEEE---ECCCccccEEEEccCCCCCccccCCceEEEEEe----------cCCeE
Confidence 12111 1235699999 78899888776665332 1222222221 16789
Q ss_pred EEEEEeeecCCCCC----CchHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEecCCCCCCchhhHHHHhC-Cceeccccc
Q 011119 186 ILIVNTHLLFPHDS----SLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQ-GFVSSYDVA 260 (493)
Q Consensus 186 v~V~ntHL~~~~~~----~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~PvIL~GDFN~~p~s~~~~~L~~~-G~~~s~~~~ 260 (493)
++|+||||.+.... .....|..|+..|.+++++... ..+.|+|||||||..|.+..|+.|... +..+.
T Consensus 135 ~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~~~---~~~~pvIl~GDfN~~~~s~~~~~ml~~l~~~~p---- 207 (283)
T TIGR03395 135 FHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSKNI---PKDETVLIGGDLNVNKGSNEYHDMFKTLNVSEP---- 207 (283)
T ss_pred EEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhccC---CCCceEEEEeeCCCCCCCHHHHHHHHHhcccCC----
Confidence 99999999764211 1257899999999998865321 135689999999999999999877443 21110
Q ss_pred CCCCCCCCCcccccccCC-------CCCCcccccceeccCC
Q 011119 261 HQYTDGDADAHKWVSHRN-------HRGNICGVDFIWLRNP 294 (493)
Q Consensus 261 ~~~~~~~~~~~~w~s~~~-------~~~~~~~iD~Ifl~~~ 294 (493)
.+. +..++|-...| ......++|||++++.
T Consensus 208 -~~~---g~~~T~d~~~N~~a~~~~~~~~~~~lDyvl~~~~ 244 (283)
T TIGR03395 208 -RYV---GVPATWDATTNSIAKYYYPKEEPEYLDYIFVSKS 244 (283)
T ss_pred -CcC---CCCCCcCCCcCchhhhhcCCCCcceEEEEEEECC
Confidence 111 12345543322 1233468999999865
No 6
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=99.83 E-value=4.1e-21 Score=194.20 Aligned_cols=256 Identities=19% Similarity=0.300 Sum_probs=167.4
Q ss_pred cEEEEeeccccccccCCcccCccccCCCCcCChHHHHHHHHHHHhhCCCcEEEEeeeccCchhHHHHHHHhhccCCccEE
Q 011119 46 CISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTF 125 (493)
Q Consensus 46 ~lrVmTyNI~~~~y~~~~~~~~~~~~~~~~~~w~~R~~~I~~~I~~~~pDIIcLQEV~~~~~~~~~~l~~~l~~~gY~~~ 125 (493)
+++||||||+++.|....... +| +.+...|.+|...++++|..++|||+||||| ..+.+++...|...||.+.
T Consensus 19 ~~~v~s~n~l~~~~~~~~~~~-~~--~~~~~~w~~r~~~~~~ei~~~~ad~icLqev----~~~~~~~~p~l~~~gY~g~ 91 (361)
T KOG0620|consen 19 TFTVLSYNILSQLYATSKLYM-YC--PSWALSWEYRRQLLLEEILNYNADILCLQEV----DRYHDFFSPELEASGYSGI 91 (361)
T ss_pred eEEeechhhhhhhhcccCCCc-cc--chhhccHHHHHHHHHHHHhCCCcceeecchh----hHHHHHccchhhhcCCcce
Confidence 899999999999888776643 44 5567899999999999999999999999999 3677888888888899999
Q ss_pred EeecC------CCCCceEEEEEecCCceEEeeeeeecCccCC-----------ceeEEEEEeeecccccccCCCCceEE-
Q 011119 126 SLART------NNRGDGLLTALHRDYFNVLNYRELLFNDFGD-----------RVAQLVHVESVVPFFQNQGGGQQEIL- 187 (493)
Q Consensus 126 ~~~~~------~~~~~G~aIl~r~s~f~i~~~~~i~~~~~~~-----------r~~~~~~~~~~~~~~~~~~~~g~~v~- 187 (493)
+.+++ .+..+||||++|.++|.++....+.++.... +..........++. .....+..+.
T Consensus 92 ~~~k~~~~~~~~~~~dGcaiffk~s~f~li~~~~i~~n~~~~~~~~~~~~~~~~~~~~d~~~~~l~~--L~~~~~~~~~~ 169 (361)
T KOG0620|consen 92 FIEKTRMGEVELEKIDGCAIFFKPSLFQLIHSSAIELNQLALSRLPPNIAQLNRLTTLDNSGNKLVS--LKAELGNMVSL 169 (361)
T ss_pred eecccccchhhcccCceeeeeecchHHhhhhhhhhhhHHHHHhhcchhHHHHHhhhccccccchhhh--hhhhcCCceee
Confidence 98875 5558999999999999999888777765331 00000000000011 1111233332
Q ss_pred ---EEEeeecCCCCCCchHHHHHHHHHHHHHHHH----HHh----h---ccCCCCCEEEEecCCCCCCchhhHHHHhCCc
Q 011119 188 ---IVNTHLLFPHDSSLSVVRLHQVYKILQYLEL----YQT----E---NKLNHIPIILCGDWNGSKRGHVYKFLRSQGF 253 (493)
Q Consensus 188 ---V~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~----~~~----~---~~~~~~PvIL~GDFN~~p~s~~~~~L~~~G~ 253 (493)
++|+|+.|.+ ....+++.|+..++..++. ... . ......|+++|||||++|.+++|.++ ..|.
T Consensus 170 ~~~~~n~h~~~~~--~~~~vkl~qv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~gdfNs~p~~~v~~~~-~~~~ 246 (361)
T KOG0620|consen 170 PHLLLNTHILWDL--PYEDVKLFQVLTLLLELAPLSPEILKIYREGNLATRIASFPLLLCGDFNSTPLSPVYALL-ASGI 246 (361)
T ss_pred ccccccceeccCC--CccchHHHHHHHHhhcccccchhhhhhhccccccccccccceeeeccccCCCCccceeec-ccCC
Confidence 4899999855 5678999999888877421 111 0 11246899999999999999999998 5554
Q ss_pred eecccccCCCCCCCCCcccccccCCCCCCcccccceeccC-CCCCCCccchhhHHHHHHHHhhhhh
Q 011119 254 VSSYDVAHQYTDGDADAHKWVSHRNHRGNICGVDFIWLRN-PNQSRKPLQASWAEAVFSIIKCQLQ 318 (493)
Q Consensus 254 ~~s~~~~~~~~~~~~~~~~w~s~~~~~~~~~~iD~Ifl~~-~~~~~~p~~Ts~~e~~l~~id~il~ 318 (493)
++..+........... .....+...+ .+++-+-+. .....++.+|++...|.+++||++.
T Consensus 247 ~~~~~~d~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ftn~t~~F~g~~DYIfy 307 (361)
T KOG0620|consen 247 LSPEDADNKDLPLMSA---LGSKVNKSYE--EMSHDQRRKLEYTTGEPRFTNYTPGFKGTLDYIFY 307 (361)
T ss_pred CCcchhhHhhcccccc---cccccccccc--ccchhhhcccccccCccccccccCCccceeeEEEE
Confidence 4422211111000000 0000000000 022222121 1345566699999999999999983
No 7
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=99.83 E-value=9e-20 Score=174.81 Aligned_cols=200 Identities=22% Similarity=0.348 Sum_probs=127.1
Q ss_pred EEEEeeccccccccCCcccCccccCCCCcCChHHHHHHHHHHHhhCCCcEEEEeeeccCchhHHHHHHHhhccCCccEEE
Q 011119 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTFS 126 (493)
Q Consensus 47 lrVmTyNI~~~~y~~~~~~~~~~~~~~~~~~w~~R~~~I~~~I~~~~pDIIcLQEV~~~~~~~~~~l~~~l~~~gY~~~~ 126 (493)
+||+||||..- ..|.+.++++|.+.+||||||||+.+....+. ...+...||+.++
T Consensus 1 mkI~SwNVNgi---------------------Rar~~~~~~~l~~~~pDVlclQEtK~~~~~fp---~~~~~~~GY~~~~ 56 (261)
T COG0708 1 MKIASWNVNGL---------------------RARLKKLLDWLEEEQPDVLCLQETKAQDEQFP---REELEALGYHHVF 56 (261)
T ss_pred CeeEEEehhhH---------------------HHHHHHHHHHHHHhCCCEEEEEecccCcccCC---HhHHhhCCceEEE
Confidence 68999999861 34788899999999999999999985543332 3344467995554
Q ss_pred eecCCCCCceEEEEEecCCceEEeeeeeecCc--cCCceeEEEEEeeecccccccCCCCceEEEEEeeecCCCCCCc-hH
Q 011119 127 LARTNNRGDGLLTALHRDYFNVLNYRELLFND--FGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSL-SV 203 (493)
Q Consensus 127 ~~~~~~~~~G~aIl~r~s~f~i~~~~~i~~~~--~~~r~~~~~~~~~~~~~~~~~~~~g~~v~V~ntHL~~~~~~~~-~~ 203 (493)
.... ++..|+||++|.....+ ..-++. ..+.-+.++.... .+ |.|+|.++. ++.. ..
T Consensus 57 ~~gq-KgysGVailsr~~~~~v----~~g~~~~~~~d~e~R~I~a~~----------~~--~~v~~~Y~P---nG~~~~~ 116 (261)
T COG0708 57 NHGQ-KGYSGVAILSKKPPDDV----RRGFPGEEEDDEEGRVIEAEF----------DG--FRVINLYFP---NGSSIGL 116 (261)
T ss_pred ecCc-CCcceEEEEEccCchhh----hcCCCCCccccccCcEEEEEE----------CC--EEEEEEEcC---CCCCCCC
Confidence 4332 56789999987654311 111221 1122233333322 22 999998884 3332 44
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCEEEEecCCCCCCc-----------------------hhhHHHHhCCceeccccc
Q 011119 204 VRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG-----------------------HVYKFLRSQGFVSSYDVA 260 (493)
Q Consensus 204 ~R~~Q~~~l~~~l~~~~~~~~~~~~PvIL~GDFN~~p~s-----------------------~~~~~L~~~G~~~s~~~~ 260 (493)
.|......+++.+..+..+....+.|+|+|||||..|.. ..+..|...||+|+++..
T Consensus 117 ~k~~yKl~f~~~l~~~l~~l~~~~~~~vl~GD~NIap~~iDv~~~~~~~~n~~~~~f~~eeR~~~~~ll~~G~~D~~R~~ 196 (261)
T COG0708 117 EKFDYKLRFLDALRNYLEELLKKGKPVVLCGDFNIAPEEIDVANPKKRWLNEGNSGFLPEERAWFRRLLNAGFVDTFRLF 196 (261)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcCCCEEEecccccCCchhcccCchhhhhcCCCCCCCHHHHHHHHHHHHcchhhhhHhh
Confidence 555555555555554444333356899999999987531 234556678999999887
Q ss_pred CCCCCCCCCcccccccCCCCC---CcccccceeccCC
Q 011119 261 HQYTDGDADAHKWVSHRNHRG---NICGVDFIWLRNP 294 (493)
Q Consensus 261 ~~~~~~~~~~~~w~s~~~~~~---~~~~iD~Ifl~~~ 294 (493)
++. ...++|.+.+.... .-.||||+++++.
T Consensus 197 ~p~----~~~YTwW~YR~~~~~~n~G~RID~~l~S~~ 229 (261)
T COG0708 197 HPE----PEKYTWWDYRANAARRNRGWRIDYILVSPA 229 (261)
T ss_pred CCC----CCcccccccccchhhhcCceeEEEEEeCHH
Confidence 764 33489998765311 2257999999854
No 8
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.82 E-value=2.1e-20 Score=181.75 Aligned_cols=216 Identities=21% Similarity=0.268 Sum_probs=151.1
Q ss_pred cEEEEeeccccccccCCcccCccccCCCCcCChHHHHHHHHHHHhhCCCcEEEEeeeccCchhHHHHHHHhhccCCccEE
Q 011119 46 CISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTF 125 (493)
Q Consensus 46 ~lrVmTyNI~~~~y~~~~~~~~~~~~~~~~~~w~~R~~~I~~~I~~~~pDIIcLQEV~~~~~~~~~~l~~~l~~~gY~~~ 125 (493)
.+||+|+|+++..|..... ..|...+.+.+.++..||+.|||||.. +++ ..+...+.. -|.+.
T Consensus 8 ~lriltlN~Wgip~~Sk~R--------------~~Rm~~~g~~l~~E~yDiv~LQEvWs~-eD~-~~L~~~~ss-~yPys 70 (422)
T KOG3873|consen 8 ELRILTLNIWGIPYVSKDR--------------RHRMDAIGDELASEKYDIVSLQEVWSQ-EDF-EYLQSGCSS-VYPYS 70 (422)
T ss_pred eeeeeEeeccccccccchh--------------HHHHHHHhHHHhhcccchhhHHHHHHH-HHH-HHHHHhccc-cCchH
Confidence 6999999999965555433 237889999999999999999999942 232 334433331 35443
Q ss_pred EeecCCCCCceEEEEEecCCceEEeeeeeecC--ccC----------CceeEEEEEeeecccccccCCCCceEEEEEeee
Q 011119 126 SLARTNNRGDGLLTALHRDYFNVLNYRELLFN--DFG----------DRVAQLVHVESVVPFFQNQGGGQQEILIVNTHL 193 (493)
Q Consensus 126 ~~~~~~~~~~G~aIl~r~s~f~i~~~~~i~~~--~~~----------~r~~~~~~~~~~~~~~~~~~~~g~~v~V~ntHL 193 (493)
..-.+|-.|.|+|+| |++||++.-.-.++ ... .+...+..+.. +|+.|.++||||
T Consensus 71 h~FHSGimGaGL~vf---SK~PI~~t~~~~y~lNG~p~~i~rGDWf~GK~Vgl~~l~~----------~g~~v~~yntHL 137 (422)
T KOG3873|consen 71 HYFHSGIMGAGLCVF---SKHPILETLFHRYSLNGYPHAIHRGDWFGGKGVGLTVLLV----------GGRMVNLYNTHL 137 (422)
T ss_pred HhhhcccccCceEEe---ecCchhhhhhhccccCCccceeeeccccccceeEEEEEee----------CCEEeeeeehhc
Confidence 333446678999999 77888876433222 211 22222222322 679999999999
Q ss_pred cCCCC---CCchHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEecCCCCCCchhhHHHHhCCceecccccCCCC------
Q 011119 194 LFPHD---SSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDVAHQYT------ 264 (493)
Q Consensus 194 ~~~~~---~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~PvIL~GDFN~~p~s~~~~~L~~~G~~~s~~~~~~~~------ 264 (493)
+++-+ ..+-..|..|+..+.+.++...+ +..-||+|||||..|.+-.+++|.+.|++|+|...|.-.
T Consensus 138 HAeY~rq~D~YL~HR~~QAwdlaqfi~~t~q----~~~vVI~~GDLN~~P~dl~~~ll~~a~l~daw~~~h~~q~e~~~~ 213 (422)
T KOG3873|consen 138 HAEYDRQNDEYLCHRVAQAWDLAQFIRATRQ----NADVVILAGDLNMQPQDLGHKLLLSAGLVDAWTSLHLDQCESDSF 213 (422)
T ss_pred cccccccCchhhhHHHHHHHHHHHHHHHHhc----CCcEEEEecCCCCCccccceeeeeccchhhhHhhhchhhhcCccc
Confidence 88543 23445799999999999998776 366799999999999999999999899998887665210
Q ss_pred ------------CCCCCcccccccCCCCCC--cccccceeccCCC
Q 011119 265 ------------DGDADAHKWVSHRNHRGN--ICGVDFIWLRNPN 295 (493)
Q Consensus 265 ------------~~~~~~~~w~s~~~~~~~--~~~iD~Ifl~~~~ 295 (493)
.++....+|.+....... .+||||+|++...
T Consensus 214 r~s~~~~l~~g~tcd~~~N~y~~aqk~~ddp~~~RiDYvl~k~~~ 258 (422)
T KOG3873|consen 214 RLSEDKELVEGNTCDSPLNCYTSAQKREDDPLGKRIDYVLVKPGD 258 (422)
T ss_pred ccchhhhhhcCCcccCcchhhhHHHhCCCCccceeeeEEEEcCcc
Confidence 123445667765544445 5889999998763
No 9
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=99.80 E-value=1.4e-18 Score=170.28 Aligned_cols=199 Identities=21% Similarity=0.323 Sum_probs=124.3
Q ss_pred EEEEeeccccccccCCcccCccccCCCCcCChHHHHHHHHHHHhhCCCcEEEEeeeccCchhHHHHHHHhhccCCccEEE
Q 011119 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTFS 126 (493)
Q Consensus 47 lrVmTyNI~~~~y~~~~~~~~~~~~~~~~~~w~~R~~~I~~~I~~~~pDIIcLQEV~~~~~~~~~~l~~~l~~~gY~~~~ 126 (493)
|||+||||... ..+...++++|..++||||||||+..... ......+...||..++
T Consensus 1 mri~t~Ni~g~---------------------~~~~~~~~~~l~~~~~DIi~LQE~~~~~~---~~~~~~~~~~g~~~~~ 56 (254)
T TIGR00195 1 MKIISWNVNGL---------------------RARLHKGLAWLKENQPDVLCLQETKVQDE---QFPLEPFHKEGYHVFF 56 (254)
T ss_pred CEEEEEEcCcH---------------------HHhHHHHHHHHHhcCCCEEEEEecccchh---hCCHHHhhcCCcEEEE
Confidence 69999999751 12355689999999999999999963321 1222333456887776
Q ss_pred eecCCCCCceEEEEEecCCceEEeeeeeecCccCCceeEEEEEeeecccccccCCCCceEEEEEeeecCCC--CCCchHH
Q 011119 127 LARTNNRGDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPH--DSSLSVV 204 (493)
Q Consensus 127 ~~~~~~~~~G~aIl~r~s~f~i~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~g~~v~V~ntHL~~~~--~~~~~~~ 204 (493)
.+. ....|+||++|..+..+.. .+..... +..+.++.++. ..+.|+|||+.... .......
T Consensus 57 ~~~--~g~~Gvailsr~~~~~~~~--~~~~~~~-~~~~r~i~~~~------------~~~~l~~~~~p~~~~~~~~~~~~ 119 (254)
T TIGR00195 57 SGQ--KGYSGVAIFSKEEPLSVRR--GFGVEEE-DAEGRIIMAEF------------DSFLVINGYFPNGSRDDSEKLPY 119 (254)
T ss_pred ecC--CCcceEEEEEcCCcceEEE--CCCCccc-ccCCCEEEEEE------------CCEEEEEEEccCCCCCCCccHHH
Confidence 554 3457899998764444322 1111111 11122222221 24889999995411 1111234
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCEEEEecCCCCCCc--------------------hhhHHHHhCCceecccccCCCC
Q 011119 205 RLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG--------------------HVYKFLRSQGFVSSYDVAHQYT 264 (493)
Q Consensus 205 R~~Q~~~l~~~l~~~~~~~~~~~~PvIL~GDFN~~p~s--------------------~~~~~L~~~G~~~s~~~~~~~~ 264 (493)
|..+...+.+.+.++.. .+.|+|+|||||..|.. ..++.+.+.|++|+|+..++.
T Consensus 120 r~~~~~~l~~~~~~~~~----~~~pvIi~GDfN~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~l~~~~l~D~~r~~~~~- 194 (254)
T TIGR00195 120 KLQWLEALQNYLEKLVD----KDKPVLICGDMNIAPTEIDLHSPDENRNHTGFLPEEREWLDRLLEAGLVDTFRKFNPD- 194 (254)
T ss_pred HHHHHHHHHHHHHHHHh----cCCcEEEEeecccCCChhhccChhhcCCCcCcChHHHHHHHHHHHcCCEeeecccCCC-
Confidence 66677777777766543 35699999999999865 256777678999999876653
Q ss_pred CCCCCcccccccCCC---CCCcccccceeccCC
Q 011119 265 DGDADAHKWVSHRNH---RGNICGVDFIWLRNP 294 (493)
Q Consensus 265 ~~~~~~~~w~s~~~~---~~~~~~iD~Ifl~~~ 294 (493)
...++|.+.... .....+|||||++..
T Consensus 195 ---~~~~T~~~~~~~~~~~~~g~RID~i~~s~~ 224 (254)
T TIGR00195 195 ---EGAYSWWDYRTKARDRNRGWRIDYFLVSEP 224 (254)
T ss_pred ---CCCCcccCCcCCccccCCceEEEEEEECHH
Confidence 345788765432 123458999999753
No 10
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.80 E-value=4.8e-19 Score=169.42 Aligned_cols=203 Identities=16% Similarity=0.135 Sum_probs=124.8
Q ss_pred EEEEeeccccccccCCcccCccccCCCCcCChHHHHHHHHHHHhhCCCcEEEEeeecc--C--chhHHHHHHHhhccCCc
Q 011119 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWV--G--NEELVLMYQERLGNAGY 122 (493)
Q Consensus 47 lrVmTyNI~~~~y~~~~~~~~~~~~~~~~~~w~~R~~~I~~~I~~~~pDIIcLQEV~~--~--~~~~~~~l~~~l~~~gY 122 (493)
++|+||||+... .. ..+..+.+.+.+.|....||||||||++. + ...+.++........+.
T Consensus 10 ~~v~TyNih~~~--~~-------------~d~r~~~~r~~~~i~~~~~Div~LQEv~~~~~~~r~~~~~~~~~~~~~~~~ 74 (259)
T COG3568 10 FKVLTYNIHKGF--GA-------------FDRRFDLPRIAEVIREVGADIVALQEVDGAFGRHRDGLLDLPHLLGRLGLA 74 (259)
T ss_pred eEEEEEEEEEcc--Cc-------------cCceecHHHHHHHHHhhccCeeeeecccccccccccccchhHHHHHHhcCC
Confidence 899999998631 10 13444688999999999999999999972 1 11222222211122222
Q ss_pred cEEEee-----cCCCCCceEEEEEecCCceEEeeeeeecCcc---CCceeEEEEEeeecccccccCCCCceEEEEEeeec
Q 011119 123 NTFSLA-----RTNNRGDGLLTALHRDYFNVLNYRELLFNDF---GDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLL 194 (493)
Q Consensus 123 ~~~~~~-----~~~~~~~G~aIl~r~s~f~i~~~~~i~~~~~---~~r~~~~~~~~~~~~~~~~~~~~g~~v~V~ntHL~ 194 (493)
.+.+.. ..+....|++|++ ++++.......++.. ..|.+....++. ..|++|.|+|+||.
T Consensus 75 ~~~~~~~~~~a~~~~~~~GnaiLS---~~pi~~v~~~~lp~~~~~~~Rgal~a~~~~---------~~g~~l~V~~~HL~ 142 (259)
T COG3568 75 PYWWSGAAFGAVYGEGQHGNAILS---RLPIRDVENLALPDPTGLEPRGALLAEIEL---------PGGKPLRVINAHLG 142 (259)
T ss_pred ccccchhhhhhhcccceeeeEEEe---cCcccchhhccCCCCCCCCCceeEEEEEEc---------CCCCEEEEEEEecc
Confidence 222111 1234578999994 778888887777753 356665555432 14789999999996
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEecCCCCCCchhhHHHHhCCcee---cc-cccCCCCCCCCCc
Q 011119 195 FPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVS---SY-DVAHQYTDGDADA 270 (493)
Q Consensus 195 ~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~PvIL~GDFN~~p~s~~~~~L~~~G~~~---s~-~~~~~~~~~~~~~ 270 (493)
+ ....|+.|+..|++.+. +.. ..|+|+|||||+.|.++.|+..... ..+ +. ....... +...
T Consensus 143 l-----~~~~R~~Q~~~L~~~~~-l~~-----~~p~vl~GDFN~~p~s~~yr~~~~~-~~~~~~~~~~~~~~a~--~~~~ 208 (259)
T COG3568 143 L-----SEESRLRQAAALLALAG-LPA-----LNPTVLMGDFNNEPGSAEYRLAARS-PLNAQAALTGAFAPAV--GRTI 208 (259)
T ss_pred c-----cHHHHHHHHHHHHhhcc-Ccc-----cCceEEEccCCCCCCCccceeccCC-chhhccccccccCccc--Cccc
Confidence 4 34789999999988221 111 2399999999999999999665322 111 00 1111100 0001
Q ss_pred ccccccCCCCCCcccccceeccCC
Q 011119 271 HKWVSHRNHRGNICGVDFIWLRNP 294 (493)
Q Consensus 271 ~~w~s~~~~~~~~~~iD~Ifl~~~ 294 (493)
.+|.+.. +..+|||||+++.
T Consensus 209 ~tfps~~----p~lriD~Ifvs~~ 228 (259)
T COG3568 209 RTFPSNT----PLLRLDRIFVSKE 228 (259)
T ss_pred CCCCCCC----ccccccEEEecCc
Confidence 3455443 2358999999875
No 11
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=99.78 E-value=8.3e-18 Score=163.76 Aligned_cols=199 Identities=18% Similarity=0.251 Sum_probs=121.4
Q ss_pred EEEEeeccccccccCCcccCccccCCCCcCChHHHH-HHHHHHHhhCCCcEEEEeeeccCchhHHHHHHHhhccCCccEE
Q 011119 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRN-QTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTF 125 (493)
Q Consensus 47 lrVmTyNI~~~~y~~~~~~~~~~~~~~~~~~w~~R~-~~I~~~I~~~~pDIIcLQEV~~~~~~~~~~l~~~l~~~gY~~~ 125 (493)
+||+||||..- ..|. ..+.++|..++||||||||+.+....+ .+...||..+
T Consensus 1 mki~swNVNgi---------------------r~~~~~~~~~~l~~~~~DIiclQEtK~~~~~~------~~~~~gY~~~ 53 (250)
T PRK13911 1 MKLISWNVNGL---------------------RACMTKGFMDFFNSVDADVFCIQESKMQQEQN------TFEFKGYFDF 53 (250)
T ss_pred CEEEEEEeCCh---------------------hHhhhhhHHHHHHhcCCCEEEEEeeccccccc------ccccCCceEE
Confidence 69999999862 1233 358899999999999999998544332 1334589766
Q ss_pred EeecCCCCCceEEEEEecCCceEEeeeeeecCccCCceeEEEEEeeecccccccCCCCceEEEEEeeecCCCCCCchHHH
Q 011119 126 SLARTNNRGDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVR 205 (493)
Q Consensus 126 ~~~~~~~~~~G~aIl~r~s~f~i~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~g~~v~V~ntHL~~~~~~~~~~~R 205 (493)
+.....++..|+||++|.....+... +.... .+.-+..+..+. ..+.|+|+++.. +.....|
T Consensus 54 ~~~~~~kgy~GVAi~~k~~~~~v~~~--~~~~~-~d~eGR~I~~~~------------~~~~l~nvY~Pn---~~~~~~r 115 (250)
T PRK13911 54 WNCAIKKGYSGVVTFTKKEPLSVSYG--INIEE-HDKEGRVITCEF------------ESFYLVNVYTPN---SQQALSR 115 (250)
T ss_pred EEecccCccceEEEEEcCCchheEEc--CCCCc-ccccCCEEEEEE------------CCEEEEEEEecC---CCCCCcc
Confidence 54333345679999998754333211 11111 122233332221 359999999843 2233346
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCEEEEecCCCCCCc--------------------hhhHHHHhCCceecccccCCCCC
Q 011119 206 LHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG--------------------HVYKFLRSQGFVSSYDVAHQYTD 265 (493)
Q Consensus 206 ~~Q~~~l~~~l~~~~~~~~~~~~PvIL~GDFN~~p~s--------------------~~~~~L~~~G~~~s~~~~~~~~~ 265 (493)
+.+...+.+.+.++.... ..+.|+|+|||||..+.. ..++.+...|++|+++..|+..
T Consensus 116 ~~~K~~~~~~~~~~l~~l-~~~~~~Ii~GD~Nva~~~~D~~~~~~~~~~~gf~~~er~~f~~~l~~gl~D~~R~~~p~~- 193 (250)
T PRK13911 116 LSYRMSWEVEFKKFLKAL-ELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYPNK- 193 (250)
T ss_pred hHHHHHHHHHHHHHHHhc-ccCCCEEEEccccCCCChhhccChhhcCCCCCcCHHHHHHHHHHHhcCCeehhhhhCCCC-
Confidence 555544444444444432 235799999999987531 1244555679999888776531
Q ss_pred CCCCcccccccCC---CCCCcccccceeccCC
Q 011119 266 GDADAHKWVSHRN---HRGNICGVDFIWLRNP 294 (493)
Q Consensus 266 ~~~~~~~w~s~~~---~~~~~~~iD~Ifl~~~ 294 (493)
...++|++.+. ....-.|||||+++..
T Consensus 194 --~~~yTww~~~~~~~~~n~g~RIDyilvs~~ 223 (250)
T PRK13911 194 --EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223 (250)
T ss_pred --CCCCccCCCcCCccccCCcceEEEEEEChH
Confidence 24588877542 1233468999999865
No 12
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=8.5e-18 Score=164.31 Aligned_cols=200 Identities=21% Similarity=0.295 Sum_probs=120.0
Q ss_pred EEEEeeccccccccCCcccCccccCCCCcCChHHHHHHH-HHHHhhCCCcEEEEeeeccCchhHHHHHHHhhccCCccEE
Q 011119 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTI-LDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTF 125 (493)
Q Consensus 47 lrVmTyNI~~~~y~~~~~~~~~~~~~~~~~~w~~R~~~I-~~~I~~~~pDIIcLQEV~~~~~~~~~~l~~~l~~~gY~~~ 125 (493)
|||+||||+.. ..+.+++ +++|...+||||||||++... .......+...||.++
T Consensus 1 lri~t~Nv~g~---------------------~~~~~~~~~~~l~~~~~DIv~LQE~~~~~---~~~~~~~~~~~g~~~~ 56 (255)
T TIGR00633 1 MKIISWNVNGL---------------------RARLHKLFLDWLKEEQPDVLCLQETKVAD---EQFPAELFEELGYHVF 56 (255)
T ss_pred CEEEEEecccH---------------------HHHhhccHHHHHHhcCCCEEEEEeccCch---hhCCHhHhccCCceEE
Confidence 69999999762 1134555 899999999999999996322 1111223345689877
Q ss_pred EeecCCCCCceEEEEEecCCceEEeeee-eecCccCCceeEEEEEeeecccccccCCCCceEEEEEeeecCCCCC--Cch
Q 011119 126 SLARTNNRGDGLLTALHRDYFNVLNYRE-LLFNDFGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDS--SLS 202 (493)
Q Consensus 126 ~~~~~~~~~~G~aIl~r~s~f~i~~~~~-i~~~~~~~r~~~~~~~~~~~~~~~~~~~~g~~v~V~ntHL~~~~~~--~~~ 202 (493)
+.+.......|+||++|. ++..... +.... .+..+..+.+. .+.+.|+++|+...... ...
T Consensus 57 ~~~~~~~~~~G~ailsr~---~~~~~~~~~~~~~-~~~~~r~l~~~------------~~~~~i~~vy~p~~~~~~~~~~ 120 (255)
T TIGR00633 57 FHGAKSKGYSGVAILSKV---EPLDVRYGFGGEE-HDEEGRVITAE------------FDGFTVVNVYVPNGGSRGLERL 120 (255)
T ss_pred EeecccCCcceEEEEEcC---CcceEEECCCCCc-ccCCCcEEEEE------------ECCEEEEEEEccCCCCCCchhH
Confidence 765543345799999764 3332221 11111 11112222221 24689999999543211 111
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCEEEEecCCCCCCc--------------------hhhHHHHhCCceecccccCC
Q 011119 203 VVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG--------------------HVYKFLRSQGFVSSYDVAHQ 262 (493)
Q Consensus 203 ~~R~~Q~~~l~~~l~~~~~~~~~~~~PvIL~GDFN~~p~s--------------------~~~~~L~~~G~~~s~~~~~~ 262 (493)
..|..+...+.+.+.+... .+.|+|+|||||+.+.. ..++.+.+.|+.+.|+..++
T Consensus 121 ~~r~~~~~~l~~~~~~~~~----~~~~~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 196 (255)
T TIGR00633 121 EYKLQFWDALFQYYEKELD----AGKPVIICGDMNVAHTEIDLGNPKENKGNAGFTPEEREWFDELLEAGLVDTFRHFNP 196 (255)
T ss_pred HHHHHHHHHHHHHHHHHHh----cCCcEEEEeecccCCChHHccChhhcCCCCCcCHHHHHHHHHHHHcCCEecchhhCC
Confidence 3466666666665544332 35699999999998742 24666667899998876654
Q ss_pred CCCCCCCcccccccCCCC---CCcccccceeccC
Q 011119 263 YTDGDADAHKWVSHRNHR---GNICGVDFIWLRN 293 (493)
Q Consensus 263 ~~~~~~~~~~w~s~~~~~---~~~~~iD~Ifl~~ 293 (493)
.. ...++|.+..... ....+|||||++.
T Consensus 197 ~~---~~~~T~~~~~~~~~~~~~~~rID~i~~s~ 227 (255)
T TIGR00633 197 DT---EGAYTWWDYRSGARDRNRGWRIDYFLVSE 227 (255)
T ss_pred CC---CCcCcCcCCccCccccCCceEEEEEEECH
Confidence 32 1246777654211 2235799999875
No 13
>PRK05421 hypothetical protein; Provisional
Probab=99.76 E-value=1.5e-17 Score=163.69 Aligned_cols=163 Identities=18% Similarity=0.095 Sum_probs=96.5
Q ss_pred CcEEEEeeccccccccCCcccCccccCCCCcCChHHHHHHHHHHHhhCCCcEEEEeeeccCchhHHHHHHHhhccCCccE
Q 011119 45 CCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNT 124 (493)
Q Consensus 45 ~~lrVmTyNI~~~~y~~~~~~~~~~~~~~~~~~w~~R~~~I~~~I~~~~pDIIcLQEV~~~~~~~~~~l~~~l~~~gY~~ 124 (493)
++||||||||+..... +....++.| ..+|||||||||+... .. ...+...|+.+
T Consensus 42 ~~lri~t~NI~~~~~~--------------------~~~~~l~~l-~~~~DiI~LQEv~~~~-~~----~~~~~~~~~~~ 95 (263)
T PRK05421 42 ERLRLLVWNIYKQQRA--------------------GWLSVLKNL-GKDADLVLLQEAQTTP-EL----VQFATANYLAA 95 (263)
T ss_pred CceeEEEEEccccccc--------------------cHHHHHHHh-ccCCCEEEEEecccCc-ch----HHHhhcccchH
Confidence 5799999999873100 133455555 8999999999996322 21 12223334443
Q ss_pred EEee--cCCCCCceEEEEEecCCceEEeeeeeecCccC---CceeEEEEEeeecccccccCCCCceEEEEEeeecCCCCC
Q 011119 125 FSLA--RTNNRGDGLLTALHRDYFNVLNYRELLFNDFG---DRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDS 199 (493)
Q Consensus 125 ~~~~--~~~~~~~G~aIl~r~s~f~i~~~~~i~~~~~~---~r~~~~~~~~~~~~~~~~~~~~g~~v~V~ntHL~~~~~~ 199 (493)
.+.+ .......|+||+ ||+|+.....+...... .+.+....++. .+++.+.|+||||....
T Consensus 96 ~~~~~~~~~~~~~GvaiL---SR~pi~~~~~~~~~~~~~~~~r~~l~a~~~~---------~~g~~l~v~ntHl~~~~-- 161 (263)
T PRK05421 96 DQAPAFVLPQHPSGVMTL---SKAHPVYCCPLREREPWLRLPKSALITEYPL---------PNGRTLLVVNIHAINFS-- 161 (263)
T ss_pred HhccccccCCCccceeEe---eecccceeeccCCCCccccCcceeEEEEEEe---------CCCCEEEEEEECccccC--
Confidence 2221 123346799999 66787765544222111 23333333321 15678999999995421
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEecCCCCCCc--hhhHHHH-hCCce
Q 011119 200 SLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG--HVYKFLR-SQGFV 254 (493)
Q Consensus 200 ~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~PvIL~GDFN~~p~s--~~~~~L~-~~G~~ 254 (493)
.....|..|+..|.+.+... ..|+|+|||||+.+.. ..++.+. ..|+.
T Consensus 162 ~~~~~r~~q~~~l~~~~~~~-------~~p~Il~GDFN~~~~~~~~~l~~~~~~~~l~ 212 (263)
T PRK05421 162 LGVDVYSKQLEPIGDQIAHH-------SGPVILAGDFNTWSRKRMNALKRFARELGLK 212 (263)
T ss_pred cChHHHHHHHHHHHHHHHhC-------CCCEEEEcccccCcccchHHHHHHHHHcCCC
Confidence 12367888998888877542 4599999999997653 2444443 33443
No 14
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.70 E-value=3.2e-16 Score=149.89 Aligned_cols=150 Identities=21% Similarity=0.261 Sum_probs=86.3
Q ss_pred HHHHHHHHHhhCCCcEEEEeeeccCchhHHHHHHHhhccCCc-cEEEeecCCC----CCceEEEEEecCCceEEeeeeee
Q 011119 81 RNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGY-NTFSLARTNN----RGDGLLTALHRDYFNVLNYRELL 155 (493)
Q Consensus 81 R~~~I~~~I~~~~pDIIcLQEV~~~~~~~~~~l~~~l~~~gY-~~~~~~~~~~----~~~G~aIl~r~s~f~i~~~~~i~ 155 (493)
+...|.+.|...+|||||||||+ .....+.+...+...++ .......... .+.|++|++|.+.+.........
T Consensus 17 ~~~~i~~~i~~~~~Dii~LQEv~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~~~~~~~~ 94 (249)
T PF03372_consen 17 KRREIAQWIAELDPDIIALQEVR--NDDLSELLEEQLRGYLGYYGSFWPGNSPPSDAGGYGVAILSRSPIFSSVSYVFSL 94 (249)
T ss_dssp HHHHHHHHHHHHT-SEEEEEEEE--SHHHHHHHHHHHHTCTTHEEEEEETSSSTTCSSSEEEEEEESSCCCEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEecch--hhhhhhhhhhhcccccccccceeccccccccccCceEEEEEcccccccccccccc
Confidence 45669999999999999999995 22345555555554443 3333332221 35799999987654444433323
Q ss_pred cCccCCceeEEEEEeeecccccccCCCCceEEEEEeeecCCCCCCchHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEec
Q 011119 156 FNDFGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGD 235 (493)
Q Consensus 156 ~~~~~~r~~~~~~~~~~~~~~~~~~~~g~~v~V~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~PvIL~GD 235 (493)
....................... .++.|+|+|+|+.+ ....|..|...+++.+....... ...|+|||||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~v~~~H~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv~GD 164 (249)
T PF03372_consen 95 FSKPGIRIFRRSSKSKGIVPVSI---NGKPITVVNVHLPS-----SNDERQEQWRELLARIQKIYADN--PNEPVIVMGD 164 (249)
T ss_dssp ESSSTTCEEEEEEEEEEEEEEEE---ETEEEEEEEEETTS-----HHHHHHHHHHHHHHHHHHHHHTS--SCCEEEEEEE
T ss_pred ccccccccccccccccccccccc---cceEEEeeeccccc-----cchhhhhhhhhhhhhhhhccccc--ccceEEEEee
Confidence 33322222111111110000000 17899999999843 33556666778888887766532 2237999999
Q ss_pred CCCCCCc
Q 011119 236 WNGSKRG 242 (493)
Q Consensus 236 FN~~p~s 242 (493)
||+.|.+
T Consensus 165 fN~~~~~ 171 (249)
T PF03372_consen 165 FNSRPDS 171 (249)
T ss_dssp -SS-BSS
T ss_pred cccCCcc
Confidence 9998875
No 15
>PTZ00297 pantothenate kinase; Provisional
Probab=99.69 E-value=1.1e-15 Score=178.47 Aligned_cols=170 Identities=21% Similarity=0.338 Sum_probs=107.5
Q ss_pred CCCcEEEEeeccccccccCCcccCccccCCCCcCChHHHHHHHHHHHhhC-CCcEEEEeeeccCc---------hhHHHH
Q 011119 43 GECCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICE-RSSVICLQEFWVGN---------EELVLM 112 (493)
Q Consensus 43 ~~~~lrVmTyNI~~~~y~~~~~~~~~~~~~~~~~~w~~R~~~I~~~I~~~-~pDIIcLQEV~~~~---------~~~~~~ 112 (493)
...+||||||||+.- . . ....| ...+|...|... +|||||||||.... ..+...
T Consensus 7 ~~~~l~VlTyNv~~~--~-~-----------~~~~~--~~~ri~~~i~~l~~~DIv~lQEvf~~~~~~~~~~~~~~~~~~ 70 (1452)
T PTZ00297 7 GCAQARVLSYNFNIL--P-R-----------GCGGF--QHERIETFLASVDAYDVVLLQEVYAASVLPYFLQKQLCFQKM 70 (1452)
T ss_pred CCCceEEEEEEcccc--C-C-----------Ccccc--cHHHHHHHHHhccCCCEEEEecccccccccccccccchhhHH
Confidence 345799999999752 1 0 01112 246677777774 78999999995211 112344
Q ss_pred HHHhhccCCccEEEeecCCC----------CCceEEEEEecCCceEEeeeeeecCccC------CceeEEEEEeeecccc
Q 011119 113 YQERLGNAGYNTFSLARTNN----------RGDGLLTALHRDYFNVLNYRELLFNDFG------DRVAQLVHVESVVPFF 176 (493)
Q Consensus 113 l~~~l~~~gY~~~~~~~~~~----------~~~G~aIl~r~s~f~i~~~~~i~~~~~~------~r~~~~~~~~~~~~~~ 176 (493)
+...++..||.++...++.. ...|+||+ |||||+....+.++... .|....+.+.. +.
T Consensus 71 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~AIL---SR~PI~~~~~~~l~~~~~~~~~~~RG~L~a~I~v--p~- 144 (1452)
T PTZ00297 71 LVDELKARGFHHYVISKQPSYLTMLRYNVCSDNGLIIA---SRFPIWQRGSYTFRNHERGEQSVRRGCLFAEVEV--PL- 144 (1452)
T ss_pred HHHHHHhcCCceeEeecCccccccccCccccCCEEEEE---ECCChhhceeeecCcccccccccccceEEEEEEc--cc-
Confidence 56667778998766544321 46799999 89999999988887532 23222332321 10
Q ss_pred cccCCCCceEEEEEeeecCCCCCCchHHHHHHHHHHHHHHHHHHhh----cc-CCCCCEEEEecCCCC
Q 011119 177 QNQGGGQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTE----NK-LNHIPIILCGDWNGS 239 (493)
Q Consensus 177 ~~~~~~g~~v~V~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~----~~-~~~~PvIL~GDFN~~ 239 (493)
...+++.++|+||||.+..+. ..|..|++++.++++..... .. ..+.|+|||||||..
T Consensus 145 --~~g~~~~v~v~~tHL~~~~~~---~~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~~ 207 (1452)
T PTZ00297 145 --AEGGSQRIVFFNVHLRQEDSL---PSTSSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNIN 207 (1452)
T ss_pred --cCCCCceEEEEEeCCCCCCCc---chHHHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCCc
Confidence 001236899999999875432 46888988888887752211 11 135699999999965
No 16
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.66 E-value=3.6e-15 Score=146.20 Aligned_cols=169 Identities=17% Similarity=0.171 Sum_probs=106.3
Q ss_pred cEEEEeeccccccccCCcccCccccCCCCcCChHHHHHHHHHHHhhCCCcEEEEeeeccCchhHHHHHHHhhcc---CCc
Q 011119 46 CISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGN---AGY 122 (493)
Q Consensus 46 ~lrVmTyNI~~~~y~~~~~~~~~~~~~~~~~~w~~R~~~I~~~I~~~~pDIIcLQEV~~~~~~~~~~l~~~l~~---~gY 122 (493)
.||||||||... .+....|..|...|++.|+ +||||++|||..........+...|.. .+|
T Consensus 17 ~l~I~SfNIr~f--------------gd~k~~~~~r~~~i~~il~--~~DIiglQEV~d~q~~~l~~ll~~Ln~~~~~~Y 80 (276)
T smart00476 17 SLRICAFNIQSF--------------GDSKMSNATLMSIIVKILS--RYDIALVQEVRDSDLSAVPKLMDQLNSDSPNTY 80 (276)
T ss_pred cEEEEEEECccc--------------CCccccHHHHHHHHHHHhc--cCCEEEEEEeecchhHHHHHHHHHHhhcCCCCc
Confidence 699999999841 1234579999999999998 889999999942111111222222321 368
Q ss_pred cEEEeecCCC--CCceEEEEEecCCceEEeeeeeecCccC-------CceeEEEEEeeecccccccCCCCceEEEEEeee
Q 011119 123 NTFSLARTNN--RGDGLLTALHRDYFNVLNYRELLFNDFG-------DRVAQLVHVESVVPFFQNQGGGQQEILIVNTHL 193 (493)
Q Consensus 123 ~~~~~~~~~~--~~~G~aIl~r~s~f~i~~~~~i~~~~~~-------~r~~~~~~~~~~~~~~~~~~~~g~~v~V~ntHL 193 (493)
.++..++.+. .++..+++||++++.+++...+ ++.. .|....+.+ +.+...++.|.++|+|+
T Consensus 81 ~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~~~~f--~d~~~~~~~~F~ReP~~~~F-------~~~~~~~~~F~li~~H~ 151 (276)
T smart00476 81 SYVSSEPLGRNSYKEQYLFLYRSDLVSVLDSYLY--DDGCECGNDVFSREPFVVKF-------SSPSTAVKEFVIVPLHT 151 (276)
T ss_pred eEEecCCCCCCCCCEEEEEEEecceEEEccccee--cCCCCCccccccccceEEEE-------EeCCCCCccEEEEEecC
Confidence 8777665443 3578999999999999987554 3321 122222222 22222457899999999
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEecCCCCCC---chhhHHH
Q 011119 194 LFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKR---GHVYKFL 248 (493)
Q Consensus 194 ~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~PvIL~GDFN~~p~---s~~~~~L 248 (493)
. + ..+..++..|.+.+....++ ....|+||+||||+.+. ...++.+
T Consensus 152 ~----p---~~~~~e~~aL~~v~~~~~~~--~~~~~villGDFNa~~~y~~~~~~~~i 200 (276)
T smart00476 152 T----P---EAAVAEIDALYDVYLDVRQK--WGTEDVIFMGDFNAGCSYVTKKQWSSI 200 (276)
T ss_pred C----h---HHHHHHHHHHHHHHHHHHHh--hccCCEEEEccCCCCCCccChhhhhhh
Confidence 3 2 23455555555544443322 24679999999999864 4455544
No 17
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=99.52 E-value=1.8e-13 Score=128.72 Aligned_cols=206 Identities=18% Similarity=0.194 Sum_probs=132.5
Q ss_pred cEEEEeeccccccccCCcccCccccCCCCcCChHHHHHHHHHHHhhCCCcEEEEeeeccCchhHHHHHHHhhccCCccEE
Q 011119 46 CISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTF 125 (493)
Q Consensus 46 ~lrVmTyNI~~~~y~~~~~~~~~~~~~~~~~~w~~R~~~I~~~I~~~~pDIIcLQEV~~~~~~~~~~l~~~l~~~gY~~~ 125 (493)
-++++||||-.. + ..+-..|.+.|...|+-++||||||||| .+...+.+.+ + +..|..+
T Consensus 99 ~~S~~~WnidgL-----d-----------ln~l~~RMrAv~H~i~l~sPdiiflQEV---~p~~y~~~~K-~-~s~y~i~ 157 (349)
T KOG2756|consen 99 MFSLITWNIDGL-----D-----------LNNLSERMRAVCHYLALYSPDVIFLQEV---IPPYYSYLKK-R-SSNYEII 157 (349)
T ss_pred EEEEEEeecccc-----c-----------cchHHHHHHHHHHHHHhcCCCEEEEeec---CchhhHHHHH-h-hhheeEE
Confidence 467778887531 1 1223469999999999999999999999 3455566665 2 2345555
Q ss_pred EeecCCCCCceEEEEEecCCceEEeeeeeecCccC-CceeEEEEEeeecccccccCCCCceEEEEEeeecCCCCCCchHH
Q 011119 126 SLARTNNRGDGLLTALHRDYFNVLNYRELLFNDFG-DRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVV 204 (493)
Q Consensus 126 ~~~~~~~~~~G~aIl~r~s~f~i~~~~~i~~~~~~-~r~~~~~~~~~~~~~~~~~~~~g~~v~V~ntHL~~~~~~~~~~~ 204 (493)
+....+ ..+. ++..++++.|..+..+.|.+.. .|..+++.++. +|.++.+.|+||.++.. ....
T Consensus 158 ~~~~~~--~~~~-~~l~~s~~~Vks~~~i~F~NS~M~R~L~I~Ev~v----------~G~Kl~l~tsHLEStr~--h~P~ 222 (349)
T KOG2756|consen 158 TGHEEG--YFTA-IMLKKSRVKVKSQEIIPFPNSKMMRNLLIVEVNV----------SGNKLCLMTSHLESTRG--HAPE 222 (349)
T ss_pred Eeccce--eeee-eeeehhhcCccccceeccCcchhhheeEEEEEee----------cCceEEEEeccccCCCC--CChH
Confidence 543222 2343 3445689999999999998754 55556666544 68889999999987442 2367
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCEEEEecCCCCCCchhhHHHHhCCceecccccCCCCCCCCCcccccccCCCC--CC
Q 011119 205 RLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDVAHQYTDGDADAHKWVSHRNHR--GN 282 (493)
Q Consensus 205 R~~Q~~~l~~~l~~~~~~~~~~~~PvIL~GDFN~~p~s~~~~~L~~~G~~~s~~~~~~~~~~~~~~~~w~s~~~~~--~~ 282 (493)
|..|....++.+++..... ++..||++||+|---. .+-++=.-.|.++.|+.+.... ...++|-+..|.. |.
T Consensus 223 r~~qF~~~~~k~~EaIe~l--PnA~ViFGGD~NlrD~-ev~r~~lPD~~vDvWE~lg~p~---~~~FTwDT~~N~nl~G~ 296 (349)
T KOG2756|consen 223 RMNQFKMVLKKMQEAIESL--PNATVIFGGDTNLRDR-EVTRCGLPDNIVDVWEFLGKPK---HCQFTWDTQMNSNLGGT 296 (349)
T ss_pred HHHHHHHHHHHHHHHHHhC--CCceEEEcCcccchhh-hcccCCCCchHHHHHHHhCCCC---cCceeeecccCcccchh
Confidence 8888877777777766654 6788999999997322 1111111235567777665332 4557888766521 11
Q ss_pred ---cccccceeccC
Q 011119 283 ---ICGVDFIWLRN 293 (493)
Q Consensus 283 ---~~~iD~Ifl~~ 293 (493)
..|+|.||.+-
T Consensus 297 ~a~k~RfDRi~~r~ 310 (349)
T KOG2756|consen 297 AACKLRFDRIFFRA 310 (349)
T ss_pred HHHHHHHHHHhhhh
Confidence 13466666543
No 18
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.41 E-value=4.5e-12 Score=122.60 Aligned_cols=159 Identities=15% Similarity=0.117 Sum_probs=96.6
Q ss_pred cEEEEeeccccccccCCcccCccccCCCCcCChHHHHHHHHHHHhhC-CCcEEEEeeeccCchhHH--------------
Q 011119 46 CISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICE-RSSVICLQEFWVGNEELV-------------- 110 (493)
Q Consensus 46 ~lrVmTyNI~~~~y~~~~~~~~~~~~~~~~~~w~~R~~~I~~~I~~~-~pDIIcLQEV~~~~~~~~-------------- 110 (493)
.++|+|||+....+.. ...|.. -+...|... ++||+++||+. +....
T Consensus 24 ~~~~~twn~qg~s~~~-------------~~kw~~---~v~~l~~~~~~~DIla~QEag--s~p~~a~~~~~~~~~~g~~ 85 (271)
T PRK15251 24 DYKVATWNLQGSSAST-------------ESKWNV---NVRQLLSGENPADILMVQEAG--SLPSSAVPTGRHVQPGGVG 85 (271)
T ss_pred cceEEEeecCCCCCCC-------------hhhhhh---hHHHHhcCCCCCCEEEEEecC--CCccccccccccccccccc
Confidence 5999999998732222 234443 244456654 69999999994 21111
Q ss_pred ---HHHHHhhc---cCCccEEEeecC--CCCCceEEEEEecCCceEEeeeeeecCccCCceeEEEEEeeecccccccCCC
Q 011119 111 ---LMYQERLG---NAGYNTFSLART--NNRGDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHVESVVPFFQNQGGG 182 (493)
Q Consensus 111 ---~~l~~~l~---~~gY~~~~~~~~--~~~~~G~aIl~r~s~f~i~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 182 (493)
+.+.-.+. ..++.|+|+.+. +....|+||+ ||++..+...+..+....|....+.+ +
T Consensus 86 ~~v~ey~w~l~~~srpgm~YiY~~aiD~~ggr~glAIl---Sr~~a~~~~~l~~p~~~~Rpilgi~i------------~ 150 (271)
T PRK15251 86 IPIDEYTWNLGTRSRPNQVYIYYSRVDVGANRVNLAIV---SRRRADEVIVLRPPTVASRPIIGIRI------------G 150 (271)
T ss_pred cCcccEEEEccCccCCCceEEEEecccCCCCceeEEEE---ecccccceEEecCCCCcccceEEEEe------------c
Confidence 00100111 234556665543 3456899999 56677666655555333333222211 2
Q ss_pred CceEEEEEeeecCCCCCCchHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEecCCCCCCchhhHHH
Q 011119 183 QQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFL 248 (493)
Q Consensus 183 g~~v~V~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~PvIL~GDFN~~p~s~~~~~L 248 (493)
.+.+++||+.+.. ...|..|+..+.+++.. . .+..|+++|||||..|.+..+.+.
T Consensus 151 --~~~ffstH~~a~~----~~da~aiV~~I~~~f~~---~--~~~~pw~I~GDFNr~P~sl~~~l~ 205 (271)
T PRK15251 151 --NDVFFSIHALANG----GTDAGAIVRAVHNFFRP---N--MRHINWMIAGDFNRSPDRLESTLD 205 (271)
T ss_pred --CeEEEEeeecCCC----CccHHHHHHHHHHHHhh---c--cCCCCEEEeccCCCCCcchhhhhc
Confidence 2799999996642 23477788777777651 1 124799999999999999977765
No 19
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=99.36 E-value=1e-11 Score=131.89 Aligned_cols=252 Identities=14% Similarity=0.189 Sum_probs=155.2
Q ss_pred CCCCcEEEEeeccccccccCC-cccC------ccccCCCCcCChHHHHHHHHHHHhhCCCcEEEEeeeccC----ch--h
Q 011119 42 MGECCISCTTFNILAPIYKRL-DHQN------QSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVG----NE--E 108 (493)
Q Consensus 42 ~~~~~lrVmTyNI~~~~y~~~-~~~~------~~~~~~~~~~~w~~R~~~I~~~I~~~~pDIIcLQEV~~~----~~--~ 108 (493)
.-+..|||.+|||++ |... +... ..||...........+.++...|..+++||++|-||+.. .. .
T Consensus 459 ~v~G~LkiasfNVlN--yf~~~~~~g~~~~~~~d~rga~~~~e~~~Q~~k~v~ai~~ldaDV~GL~Eien~~~~~~s~~a 536 (798)
T COG2374 459 DVGGSLKIASFNVLN--YFNKLSGDGGGASTFSDCRGANTTEEFARQRAKIVTAILTLDADVLGLMEIENNGYGTDSGDA 536 (798)
T ss_pred ccCceeeeeeeehhh--hhccCCCCCCCccccccccCccchhHHHHHHHHHHHHHhhcchhhheeeeeeccCCCCCcHHH
Confidence 344689999999997 5442 1111 123444444556667888999999999999999999621 11 2
Q ss_pred H---HHHHHHhhccC-CccEEEeecC---CCCCceEEEEEecCCceEEeeeeeecCccCCceeEEEEE---eeecccccc
Q 011119 109 L---VLMYQERLGNA-GYNTFSLART---NNRGDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHV---ESVVPFFQN 178 (493)
Q Consensus 109 ~---~~~l~~~l~~~-gY~~~~~~~~---~~~~~G~aIl~r~s~f~i~~~~~i~~~~~~~r~~~~~~~---~~~~~~~~~ 178 (493)
. ...+.+.+... .|.+++..+. +....+++++||.++..++....+.-.+....+.....- ....+..+.
T Consensus 537 i~~lV~~lna~~G~~~~y~~v~p~~~~~lgtD~I~vg~iY~~~~V~~~g~~~~~~~~a~~~v~~~~~~n~R~~laqtF~~ 616 (798)
T COG2374 537 IAQLVNALNAKAGAGTRYAFVAPGRNGGLGTDAIRVGFIYKPSAVSLVGKAAIVDNDAFLGVGEIDDNNARPPLAQTFQD 616 (798)
T ss_pred HHHHHHHHHhhcCCCceEEEEecCccCCcCCCceeEEEEeccceEEecccccccccccccccccccccccCcchhhhhhh
Confidence 2 22333334433 2444444433 223568999999988887776554322111111111000 000011111
Q ss_pred cCCCCceEEEEEeeecCC----C-C-------CCchHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEecCCCCCCchhhH
Q 011119 179 QGGGQQEILIVNTHLLFP----H-D-------SSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYK 246 (493)
Q Consensus 179 ~~~~g~~v~V~ntHL~~~----~-~-------~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~PvIL~GDFN~~p~s~~~~ 246 (493)
..++.+|.|+.-||.+. | + ......|.+|+++|..+++..... ....|++|.||||+.-.+.+++
T Consensus 617 -~~~~ekfvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~la~~~~~--~~d~~~viLGD~N~y~~edpI~ 693 (798)
T COG2374 617 -LSGGEKFVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFLATNPTG--KADADIVILGDFNDYAFEDPIQ 693 (798)
T ss_pred -ccCCcEEEEEEeeecccCCCCCCcccccccccchhhHHHHHHHHHHHHHhhCccc--ccCCCEEEEeccchhhhccHHH
Confidence 12567799999999652 2 1 122357999999999999874432 2578999999999999999999
Q ss_pred HHHhCCceecccccCCCCCCCCCcccccccCCCCCCcccccceeccCCCCCCCccchhhH
Q 011119 247 FLRSQGFVSSYDVAHQYTDGDADAHKWVSHRNHRGNICGVDFIWLRNPNQSRKPLQASWA 306 (493)
Q Consensus 247 ~L~~~G~~~s~~~~~~~~~~~~~~~~w~s~~~~~~~~~~iD~Ifl~~~~~~~~p~~Ts~~ 306 (493)
.|+..|++..--..+.. . ..|. +-+.|...-+||++.+..........+.|+
T Consensus 694 ~l~~aGy~~l~~~~~~~----~--~~YS--Y~f~G~~gtLDhaLas~sl~~~v~~a~ewH 745 (798)
T COG2374 694 ALEGAGYMNLAARFHDA----G--DRYS--YVFNGQSGTLDHALASASLAAQVSGATEWH 745 (798)
T ss_pred HHhhcCchhhhhhccCC----C--CceE--EEECCccchHhhhhhhhhhhhhccCceeee
Confidence 99888976533222211 1 1222 223467777999999877777777888887
No 20
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.22 E-value=1e-11 Score=101.02 Aligned_cols=66 Identities=23% Similarity=0.204 Sum_probs=60.4
Q ss_pred hcccccccccccccc-CCCCcceeHHHHHHHHHH-hhcCCCCCCCCH-HHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 319 KASLAENDAFAFFKA-DNNGDVITHSAFCEALRQ-VNLAGLPYGLSF-QETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 319 ~~~~~~~~~F~~~D~-d~~~G~I~~~el~~~l~~-lg~~g~~~~~~~-~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
+....+..+|+.||+ +++ |+|+.+||+.+|++ +|. .++. +++++||+.+|.|+||.|+|+||..+|
T Consensus 5 ~ai~~l~~~F~~fd~~~~~-g~i~~~ELk~ll~~elg~-----~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~ 73 (89)
T cd05022 5 KAIETLVSNFHKASVKGGK-ESLTASEFQELLTQQLPH-----LLKDVEGLEEKMKNLDVNQDSKLSFEEFWELI 73 (89)
T ss_pred HHHHHHHHHHHHHhCCCCC-CeECHHHHHHHHHHHhhh-----hccCHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 344567889999999 999 99999999999999 997 7888 999999999999999999999999776
No 21
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.14 E-value=1.7e-11 Score=112.81 Aligned_cols=105 Identities=16% Similarity=0.253 Sum_probs=89.0
Q ss_pred cccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHhhHHHHHHH
Q 011119 323 AENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHAYFLSKLLIISFV 402 (493)
Q Consensus 323 ~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~ 402 (493)
.+...|...|+|+. |+|+.+||+.+|...+. .+++.+.|+.||..+|.|.+|+|+|+||+.+...+
T Consensus 58 ~~~~~f~~vD~d~s-g~i~~~eLq~aLsn~~~----~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i--------- 123 (221)
T KOG0037|consen 58 QLAGWFQSVDRDRS-GRILAKELQQALSNGTW----SPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI--------- 123 (221)
T ss_pred HHHHHHHhhCcccc-ccccHHHHHHHhhcCCC----CCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH---------
Confidence 45667999999999 99999999999986443 18999999999999999999999999999444111
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchhhhcccCCCCCCCCcccccccccceeeccccc
Q 011119 403 CQWCLESMLKLLALQQRMWNLSCSAQIENNCNDNMEDSKDCSEKEILGFAVKDAFL 458 (493)
Q Consensus 403 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 458 (493)
+-| ..++.++|.|.+|.|+.+|...+++.+||++++.++
T Consensus 124 ----------------~~W-r~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~ 162 (221)
T KOG0037|consen 124 ----------------NQW-RNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFY 162 (221)
T ss_pred ----------------HHH-HHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHH
Confidence 223 457789999999999999999999999999998764
No 22
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.12 E-value=1.1e-10 Score=104.34 Aligned_cols=66 Identities=29% Similarity=0.465 Sum_probs=61.4
Q ss_pred hccccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 319 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 319 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
....+++.+|++||+|++ |+|+..||+.+|+.+|. .++++|++.|++.+|.|+||.|+|+||+..+
T Consensus 89 ~~~Eel~~aF~~fD~d~d-G~Is~~eL~~vl~~lge-----~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 89 DKEEELREAFKLFDKDHD-GYISIGELRRVLKSLGE-----RLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred CcHHHHHHHHHHhCCCCC-ceecHHHHHHHHHhhcc-----cCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 335678999999999999 99999999999999999 9999999999999999999999999999544
No 23
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.11 E-value=9.7e-11 Score=95.33 Aligned_cols=66 Identities=21% Similarity=0.338 Sum_probs=59.6
Q ss_pred hccccccccccccc-cCCCCc-ceeHHHHHHHHHH-----hhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 319 KASLAENDAFAFFK-ADNNGD-VITHSAFCEALRQ-----VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 319 ~~~~~~~~~F~~~D-~d~~~G-~I~~~el~~~l~~-----lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
.....++++|+.+| +||+ | +|+.+||+.+|+. +|. ..++++++++++.+|.|+||.|+|+||..++
T Consensus 5 ~~~~~l~~aF~~fD~~dgd-G~~I~~~eL~~ll~~~~~~~lg~-----~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li 77 (88)
T cd05027 5 KAMVALIDVFHQYSGREGD-KHKLKKSELKELINNELSHFLEE-----IKEQEVVDKVMETLDSDGDGECDFQEFMAFV 77 (88)
T ss_pred HHHHHHHHHHHHhcccCCC-cCEECHHHHHHHHHHHhHHHhcC-----CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 44556888999998 7999 9 6999999999999 888 8899999999999999999999999998555
No 24
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.11 E-value=1.3e-10 Score=104.71 Aligned_cols=63 Identities=30% Similarity=0.477 Sum_probs=60.5
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
.+++++|+.||+|++ |+||++||+.+|..+|. +++.++++.|+..+|.|+||.|+|+||+.+|
T Consensus 85 ~el~eaF~~fD~d~~-G~Is~~el~~~l~~lg~-----~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m 147 (151)
T KOG0027|consen 85 EELKEAFRVFDKDGD-GFISASELKKVLTSLGE-----KLTDEECKEMIREVDVDGDGKVNFEEFVKMM 147 (151)
T ss_pred HHHHHHHHHHccCCC-CcCcHHHHHHHHHHhCC-----cCCHHHHHHHHHhcCCCCCCeEeHHHHHHHH
Confidence 478999999999999 99999999999999999 9999999999999999999999999999666
No 25
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.10 E-value=7e-11 Score=106.48 Aligned_cols=113 Identities=20% Similarity=0.232 Sum_probs=89.0
Q ss_pred cccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHhhHHHHH
Q 011119 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHAYFLSKLLIIS 400 (493)
Q Consensus 321 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~ 400 (493)
..+++++|..||+|++ |+|+..||..+|+.+|. .++++++..++.++|.||+|.|+|+||+.+|.-.....
T Consensus 7 ~~el~~~F~~fD~d~~-G~i~~~el~~~lr~lg~-----~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~--- 77 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGD-GKISVEELGAVLRSLGQ-----NPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEK--- 77 (151)
T ss_pred HHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCC-----CCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccc---
Confidence 3567889999999999 99999999999999999 99999999999999999999999999997773111111
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccchhhhcccCCCCCCCCcccccccccceeec
Q 011119 401 FVCQWCLESMLKLLALQQRMWNLSCSAQIENNCNDNMEDSKDCSEKEILGFAVK 454 (493)
Q Consensus 401 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 454 (493)
.......+.++++ ++-.|.|++|.|.-.|.......+|...+
T Consensus 78 ~~~~~~~~el~ea------------F~~fD~d~~G~Is~~el~~~l~~lg~~~~ 119 (151)
T KOG0027|consen 78 TDEEASSEELKEA------------FRVFDKDGDGFISASELKKVLTSLGEKLT 119 (151)
T ss_pred ccccccHHHHHHH------------HHHHccCCCCcCcHHHHHHHHHHhCCcCC
Confidence 0000112233322 33468999999999999888888888877
No 26
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.10 E-value=5.4e-10 Score=109.24 Aligned_cols=195 Identities=16% Similarity=0.101 Sum_probs=111.6
Q ss_pred CcEEEEeeccccccccCCcccCccccCCCCcCChHHHHHHHHHHHhhCCCcEEEEeeeccCchhHHHHHHHhhccCCccE
Q 011119 45 CCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNT 124 (493)
Q Consensus 45 ~~lrVmTyNI~~~~y~~~~~~~~~~~~~~~~~~w~~R~~~I~~~I~~~~pDIIcLQEV~~~~~~~~~~l~~~l~~~gY~~ 124 (493)
..++++++|++.+ +. -..+++..|.+.++|+|-+||+. .+....-..++ ..|.+
T Consensus 87 ~~~~~l~~N~r~~-----n~----------------~~~k~Lsl~~~~~~D~v~~~E~~----~~~~~~~~~l~-~~yP~ 140 (309)
T COG3021 87 RLLWNLQKNVRFD-----NA----------------SVAKLLSLIQQLDADAVTTPEGV----QLWTAKVGALA-AQYPA 140 (309)
T ss_pred hhhhhhhhhcccc-----Cc----------------CHHHHHHHHhhhCcchhhhHHHH----HHhHhHHHHHH-HhCCc
Confidence 4689999998762 11 16788888999999999999983 22222222333 46775
Q ss_pred EEeecCCCCCceEEEEEecCCceEEeeeeeecCccCCceeEEEEEeeecccccccCCCCceEEEEEeeec-CCCCCCchH
Q 011119 125 FSLARTNNRGDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLL-FPHDSSLSV 203 (493)
Q Consensus 125 ~~~~~~~~~~~G~aIl~r~s~f~i~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~g~~v~V~ntHL~-~~~~~~~~~ 203 (493)
+....-+....+.++++|+...+.... .-++.. ++.+...... ..+|+.+.|++.|.. ++-. ...
T Consensus 141 ~~~~~~~~~~~~~a~~sr~~~~~~~~~-e~~~~~--pk~~~~t~~~---------~~~g~~l~v~~lh~~~~~~~--~~~ 206 (309)
T COG3021 141 FILCQHPTGVFTLAILSRRPCCPLTEA-EPWLRL--PKSALATAYP---------LPDGTELTVVALHAVNFPVG--TDP 206 (309)
T ss_pred eeecCCCCCeeeeeecccccccccccc-CccccC--CccceeEEEE---------cCCCCEEEEEeeccccccCC--ccH
Confidence 443322224567777765432111111 111111 2222222111 127999999999986 4221 122
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCEEEEecCCCCCCchhhHHHHhCCceecccccCCCCCCCCCcccccccCCCCCCc
Q 011119 204 VRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDVAHQYTDGDADAHKWVSHRNHRGNI 283 (493)
Q Consensus 204 ~R~~Q~~~l~~~l~~~~~~~~~~~~PvIL~GDFN~~p~s~~~~~L~~~G~~~s~~~~~~~~~~~~~~~~w~s~~~~~~~~ 283 (493)
.| .|...+.+.+... ..|+|++||||+.|.|..++.+..-|.......++. ....++...... -..
T Consensus 207 ~~-~ql~~l~~~i~~~-------~gpvIlaGDfNa~pWS~~~~R~~~l~~~~~~~~aG~-----~~~~~~p~~~~r-~~g 272 (309)
T COG3021 207 QR-AQLLELGDQIAGH-------SGPVILAGDFNAPPWSRTAKRMAALGGLRAAPRAGL-----WEVRFTPDERRR-AFG 272 (309)
T ss_pred HH-HHHHHHHHHHHcC-------CCCeEEeecCCCcchhHHHHHHHHhcccccchhccC-----CccccCHHHHhh-ccC
Confidence 33 7777777766654 459999999999999999888866554444433321 111122221110 122
Q ss_pred ccccceeccC
Q 011119 284 CGVDFIWLRN 293 (493)
Q Consensus 284 ~~iD~Ifl~~ 293 (493)
..|||||.++
T Consensus 273 ~PIDhvf~rg 282 (309)
T COG3021 273 LPIDHVFYRG 282 (309)
T ss_pred CCcceeeecC
Confidence 4599999986
No 27
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.10 E-value=1.2e-10 Score=89.43 Aligned_cols=61 Identities=26% Similarity=0.508 Sum_probs=52.4
Q ss_pred ccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHH----HHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 324 ENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQE----TDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 324 ~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e----~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
++++|+.+|+|++ |+|+.+||+.+++.++. ..++++ ++.+++.+|.|+||.|+|+||+.+|
T Consensus 2 l~~~F~~~D~d~~-G~i~~~el~~~~~~~~~-----~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGD-GYISKEELRRALKHLGR-----DMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSS-SEEEHHHHHHHHHHTTS-----HSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCcc-CCCCHHHHHHHHHHhcc-----cccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4678999999999 99999999999999986 555544 5555999999999999999999554
No 28
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=2.9e-10 Score=99.51 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=96.4
Q ss_pred ccccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHhhHHHH
Q 011119 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHAYFLSKLLII 399 (493)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~ 399 (493)
...+++.+|..||.+++ |+|+++||+.+++++|. .+..+||.+|+...|++|.|.|+|++|...| +.
T Consensus 31 q~q~i~e~f~lfd~~~~-g~iD~~EL~vAmralGF-----E~~k~ei~kll~d~dk~~~g~i~fe~f~~~m-------t~ 97 (172)
T KOG0028|consen 31 QKQEIKEAFELFDPDMA-GKIDVEELKVAMRALGF-----EPKKEEILKLLADVDKEGSGKITFEDFRRVM-------TV 97 (172)
T ss_pred HHhhHHHHHHhhccCCC-CcccHHHHHHHHHHcCC-----CcchHHHHHHHHhhhhccCceechHHHHHHH-------HH
Confidence 33567889999999999 99999999999999999 9999999999999999999999999999666 78
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccchhhhcccCCCCCCCCcccccccccceeeccccc
Q 011119 400 SFVCQWCLESMLKLLALQQRMWNLSCSAQIENNCNDNMEDSKDCSEKEILGFAVKDAFL 458 (493)
Q Consensus 400 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 458 (493)
.+.++...|+++++++ -.|.|+.|.|...+.+.--..+|=++.++-|
T Consensus 98 k~~e~dt~eEi~~afr------------l~D~D~~Gkis~~~lkrvakeLgenltD~El 144 (172)
T KOG0028|consen 98 KLGERDTKEEIKKAFR------------LFDDDKTGKISQRNLKRVAKELGENLTDEEL 144 (172)
T ss_pred HHhccCcHHHHHHHHH------------cccccCCCCcCHHHHHHHHHHhCccccHHHH
Confidence 8888888888887643 2567788888777777766667777776665
No 29
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.95 E-value=1.3e-09 Score=88.61 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=58.3
Q ss_pred hcccccccccccccc-CCCCcceeHHHHHHHHHH---hhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHH
Q 011119 319 KASLAENDAFAFFKA-DNNGDVITHSAFCEALRQ---VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHAY 391 (493)
Q Consensus 319 ~~~~~~~~~F~~~D~-d~~~G~I~~~el~~~l~~---lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~~ 391 (493)
+....+..+|..+|. ||++|+|+.+||+.+|+. +|. +++++++++|++.+|.|++|.|+|+||+.+|.
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~-----k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGS-----KLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 344556778999998 773399999999999974 677 89999999999999999999999999996663
No 30
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.94 E-value=1.3e-09 Score=89.77 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=56.8
Q ss_pred hhccccccccccccc-cCCCCc-ceeHHHHHHHHHH-hhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 318 QKASLAENDAFAFFK-ADNNGD-VITHSAFCEALRQ-VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 318 ~~~~~~~~~~F~~~D-~d~~~G-~I~~~el~~~l~~-lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
+++...+.++|..|| +||+ | +|+.+||+.+|+. ++.. .....+++++++|+.++|.|+||.|+|+||+.+|
T Consensus 6 e~a~~~~~~~F~~~dd~dgd-g~~Is~~EL~~ll~~~~~~~-~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~ 79 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGD-RYKLSKGELKELLQRELTDF-LSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLV 79 (93)
T ss_pred HHHHHHHHHHHHHHHccCCC-CCEECHHHHHHHHHHHhHHh-cccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 344556788999999 7898 8 5999999999977 4320 0013478899999999999999999999999666
No 31
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.93 E-value=6.6e-10 Score=99.37 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=90.2
Q ss_pred hhccccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHhhHH
Q 011119 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHAYFLSKLL 397 (493)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~~~~~~~~ 397 (493)
.+...+++++|.++|.|++ |.|+..||..+|+.+|. ++++.++.+|+..+|. |+|.|+|.+|+.+|....
T Consensus 16 ~~qi~~lkeaF~l~D~d~~-G~I~~~el~~ilr~lg~-----~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~--- 85 (160)
T COG5126 16 EEQIQELKEAFQLFDRDSD-GLIDRNELGKILRSLGF-----NPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL--- 85 (160)
T ss_pred HHHHHHHHHHHHHhCcCCC-CCCcHHHHHHHHHHcCC-----CCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh---
Confidence 4455678899999999999 99999999999999999 9999999999999999 999999999997773221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccchhhhcccCCCCCCCCcccccccccceeecccc
Q 011119 398 IISFVCQWCLESMLKLLALQQRMWNLSCSAQIENNCNDNMEDSKDCSEKEILGFAVKDAF 457 (493)
Q Consensus 398 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 457 (493)
......|..+++ +.-.|.|+.|.|.-.+.......+|-+.+++.
T Consensus 86 ----~~~~~~Eel~~a------------F~~fD~d~dG~Is~~eL~~vl~~lge~~~dee 129 (160)
T COG5126 86 ----KRGDKEEELREA------------FKLFDKDHDGYISIGELRRVLKSLGERLSDEE 129 (160)
T ss_pred ----ccCCcHHHHHHH------------HHHhCCCCCceecHHHHHHHHHhhcccCCHHH
Confidence 122223333333 33478999999988888777777787776554
No 32
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.91 E-value=1.7e-09 Score=89.40 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=57.1
Q ss_pred ccccccccccccc-CC-CCcceeHHHHHHHHHH-----hhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 321 SLAENDAFAFFKA-DN-NGDVITHSAFCEALRQ-----VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 321 ~~~~~~~F~~~D~-d~-~~G~I~~~el~~~l~~-----lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
...++++|..+|. |+ + |+|+.+||+.+|+. +|. .+++++++.|++.+|.|++|.|+|+||+.+|
T Consensus 7 ~~~l~~~F~~~D~~dg~d-G~Is~~El~~~l~~~~g~~lg~-----~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~ 77 (94)
T cd05031 7 MESLILTFHRYAGKDGDK-NTLSRKELKKLMEKELSEFLKN-----QKDPMAVDKIMKDLDQNRDGKVNFEEFVSLV 77 (94)
T ss_pred HHHHHHHHHHHhccCCCC-CeECHHHHHHHHHHHhHHHhhc-----cccHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 3457889999997 97 7 99999999999986 466 7899999999999999999999999999666
No 33
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.90 E-value=1.8e-09 Score=88.79 Aligned_cols=70 Identities=17% Similarity=0.270 Sum_probs=57.9
Q ss_pred hccccccccccccc-cCCCCc-ceeHHHHHHHHHH-hhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 319 KASLAENDAFAFFK-ADNNGD-VITHSAFCEALRQ-VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 319 ~~~~~~~~~F~~~D-~d~~~G-~I~~~el~~~l~~-lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
.....++++|..|| ++++ | +|+.+||+.+|+. +|.. -...++++++++|++.+|.|++|.|+|+||+.++
T Consensus 6 ~~~~~l~~~F~~fDd~dg~-G~~Is~~El~~~l~~~lg~~-~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~ 78 (92)
T cd05025 6 TAMETLINVFHAHSGKEGD-KYKLSKKELKDLLQTELSDF-LDAQKDADAVDKIMKELDENGDGEVDFQEFVVLV 78 (92)
T ss_pred HHHHHHHHHHHHHhcccCC-CCeECHHHHHHHHHHHHHHH-ccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHH
Confidence 34456888999997 9999 9 5999999999986 6640 0014689999999999999999999999999655
No 34
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=4.2e-09 Score=92.33 Aligned_cols=67 Identities=25% Similarity=0.361 Sum_probs=62.7
Q ss_pred hhccccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
.....++..+|+.+|.|++ |+|+..+|+.+.+.||. ++|++|+++||.++|.|+||.|+-+||..+|
T Consensus 102 ~dt~eEi~~afrl~D~D~~-Gkis~~~lkrvakeLge-----nltD~El~eMIeEAd~d~dgevneeEF~~im 168 (172)
T KOG0028|consen 102 RDTKEEIKKAFRLFDDDKT-GKISQRNLKRVAKELGE-----NLTDEELMEMIEEADRDGDGEVNEEEFIRIM 168 (172)
T ss_pred cCcHHHHHHHHHcccccCC-CCcCHHHHHHHHHHhCc-----cccHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 3455678999999999999 99999999999999999 9999999999999999999999999999666
No 35
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.86 E-value=7.1e-09 Score=76.24 Aligned_cols=48 Identities=33% Similarity=0.569 Sum_probs=45.9
Q ss_pred cceeHHHHHHHHHHhhcCCCCCC-CCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 338 DVITHSAFCEALRQVNLAGLPYG-LSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 338 G~I~~~el~~~l~~lg~~g~~~~-~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
|.|+.+||+.+|+.+|. + +++++++.|+..+|.|++|.|+|+||+.+|
T Consensus 3 G~i~~~~~~~~l~~~g~-----~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 3 GKITREEFRRALSKLGI-----KDLSEEEVDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp SEEEHHHHHHHHHHTTS-----SSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred CEECHHHHHHHHHHhCC-----CCCCHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 99999999999988999 8 999999999999999999999999999665
No 36
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.80 E-value=9.2e-09 Score=85.28 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=56.6
Q ss_pred ccccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
....++++|..+|+|++ |.|+.+||+.+|+.+| ++++++++|+..+|.+++|.|+|+||+.+|
T Consensus 8 ~~~~l~~~F~~~D~d~~-G~Is~~el~~~l~~~~-------~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~ 70 (96)
T smart00027 8 DKAKYEQIFRSLDKNQD-GTVTGAQAKPILLKSG-------LPQTLLAKIWNLADIDNDGELDKDEFALAM 70 (96)
T ss_pred HHHHHHHHHHHhCCCCC-CeEeHHHHHHHHHHcC-------CCHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Confidence 34467889999999999 9999999999998854 688999999999999999999999999666
No 37
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.78 E-value=1.3e-08 Score=78.03 Aligned_cols=58 Identities=22% Similarity=0.393 Sum_probs=53.0
Q ss_pred cccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 325 NDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 325 ~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
+++|..+|+|++ |.|+.+|++.+|+.+| ++.+++++++..+|.+++|.|+|+||+.++
T Consensus 2 ~~~F~~~D~~~~-G~i~~~el~~~l~~~g-------~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~ 59 (67)
T cd00052 2 DQIFRSLDPDGD-GLISGDEARPFLGKSG-------LPRSVLAQIWDLADTDKDGKLDKEEFAIAM 59 (67)
T ss_pred hHHHHHhCCCCC-CcCcHHHHHHHHHHcC-------CCHHHHHHHHHHhcCCCCCcCCHHHHHHHH
Confidence 468999999999 9999999999999865 478899999999999999999999999666
No 38
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.73 E-value=1.6e-08 Score=82.40 Aligned_cols=69 Identities=22% Similarity=0.288 Sum_probs=57.7
Q ss_pred cccccccccccccc--CCCCcceeHHHHHHHHHH-hhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 320 ASLAENDAFAFFKA--DNNGDVITHSAFCEALRQ-VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 320 ~~~~~~~~F~~~D~--d~~~G~I~~~el~~~l~~-lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
....++++|..+|+ |++ |.|+.+||+.+++. +|. ......+.++++.|+..+|.+++|.|+|+||+.++
T Consensus 6 ~~~~l~~~F~~~D~~~~~~-G~Is~~el~~~l~~~~g~-~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~ 77 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDK-DTLSKKELKELLETELPN-FLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLI 77 (88)
T ss_pred HHHHHHHHHHHHhhccCCC-CcCcHHHHHHHHHHHhhh-hccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHH
Confidence 34557889999999 899 99999999999986 564 00123569999999999999999999999999666
No 39
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.72 E-value=2.5e-08 Score=81.31 Aligned_cols=67 Identities=12% Similarity=0.162 Sum_probs=55.9
Q ss_pred hccccccccccc-cccCCCCcceeHHHHHHHHHHh-----hcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 319 KASLAENDAFAF-FKADNNGDVITHSAFCEALRQV-----NLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 319 ~~~~~~~~~F~~-~D~d~~~G~I~~~el~~~l~~l-----g~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
+....+..+|.. +|++|++|.|+.+||+.+|..- +. ..++.++++|++.+|.|+||.|+|+||+.+|
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~-----~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~ 78 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKN-----QKDPGVLDRMMKKLDLNSDGQLDFQEFLNLI 78 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcC-----CCCHHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence 344557788988 8898972499999999999874 22 5678999999999999999999999999666
No 40
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=98.60 E-value=7e-07 Score=89.95 Aligned_cols=135 Identities=19% Similarity=0.183 Sum_probs=72.3
Q ss_pred CCCcE--EEEeee-cc--------Cc---hhHHHHHHHhhcc-CCccEEEeecCCCCCceEEEEEecCCceEE---eeee
Q 011119 92 ERSSV--ICLQEF-WV--------GN---EELVLMYQERLGN-AGYNTFSLARTNNRGDGLLTALHRDYFNVL---NYRE 153 (493)
Q Consensus 92 ~~pDI--IcLQEV-~~--------~~---~~~~~~l~~~l~~-~gY~~~~~~~~~~~~~G~aIl~r~s~f~i~---~~~~ 153 (493)
..||| |+|||+ +. .+ ..+.+.+...|.. ..|..+.. ..-.+.++.|+.|.+-.+-+ ....
T Consensus 37 ~~pDI~viglQEi~~~~~~~~~~~~~~~~~~W~~~i~~~l~~~~~Y~~v~~--~~l~gi~l~vf~~~~~~~~i~~v~~~~ 114 (310)
T smart00128 37 EKPDIYVIGLQEVVDLENGVLLETIAGKERLWSKLIESSLNGDGQYNVLAK--VRLVGILVLVFVKANHLVYIKDVETFT 114 (310)
T ss_pred CCCCEEEEEeeeecccchhhhhhccchhHHHHHHHHHHhcCCCCceEEEee--eeecceEEEEEEehhhcCccceeEeee
Confidence 67999 779999 21 01 1122223333331 33444433 23446788888887643222 2222
Q ss_pred eecCc---cCCceeEEEEEeeecccccccCCCCceEEEEEeeecCCCCCCchHHHHHHHHHHHHHHHHHHhhc--cCCCC
Q 011119 154 LLFND---FGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTEN--KLNHI 228 (493)
Q Consensus 154 i~~~~---~~~r~~~~~~~~~~~~~~~~~~~~g~~v~V~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~--~~~~~ 228 (493)
+...- .+.+.+..+.+.. .+..++++|+||.+.. .....|..+...|++.+.--.... .....
T Consensus 115 v~~G~~~~~~nKG~v~i~~~~----------~~~~~~fv~~HL~a~~--~~~~~R~~~~~~I~~~~~f~~~~~~~~~~~d 182 (310)
T smart00128 115 VKTGMGGLWGNKGAVAVRFKL----------SDTSFCFVNSHLAAGA--SNVEQRNQDYKTILRALSFPERAELSQFDHD 182 (310)
T ss_pred eeccccceeecCceEEEEEEE----------cCcEEEEEeecccccc--chhhhhHHHHHHHHHhcCCCCCccccccccc
Confidence 22111 1123333333322 5789999999997643 234678888888876552111000 01356
Q ss_pred CEEEEecCCCCC
Q 011119 229 PIILCGDWNGSK 240 (493)
Q Consensus 229 PvIL~GDFN~~p 240 (493)
.+|++||||---
T Consensus 183 ~~f~~GDlNyRi 194 (310)
T smart00128 183 VVFWFGDLNFRL 194 (310)
T ss_pred eEEEecCcceee
Confidence 899999999643
No 41
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.58 E-value=1.2e-07 Score=70.38 Aligned_cols=60 Identities=32% Similarity=0.567 Sum_probs=55.7
Q ss_pred ccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHH
Q 011119 324 ENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVH 389 (493)
Q Consensus 324 ~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~ 389 (493)
+..+|..+|.+++ |.|+.+|+..+++.++. +.+.+++..++..+|.+++|.|+|+||..+
T Consensus 2 ~~~~f~~~d~~~~-g~l~~~e~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 2 LREAFRLFDKDGD-GTISADELKAALKSLGE-----GLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHHhCCCCC-CcCcHHHHHHHHHHhCC-----CCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 4567999999999 99999999999999998 999999999999999999999999999843
No 42
>PTZ00184 calmodulin; Provisional
Probab=98.57 E-value=3.1e-08 Score=88.01 Aligned_cols=111 Identities=20% Similarity=0.235 Sum_probs=82.2
Q ss_pred cccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHhhHHHHH
Q 011119 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHAYFLSKLLIIS 400 (493)
Q Consensus 321 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~ 400 (493)
...+...|..+|.+++ |.|+.+||..++..+|. +++.+++..++..+|.+++|.|+|+||+.++....+..
T Consensus 10 ~~~~~~~F~~~D~~~~-G~i~~~e~~~~l~~~~~-----~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~--- 80 (149)
T PTZ00184 10 IAEFKEAFSLFDKDGD-GTITTKELGTVMRSLGQ-----NPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT--- 80 (149)
T ss_pred HHHHHHHHHHHcCCCC-CcCCHHHHHHHHHHhCC-----CCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC---
Confidence 3456788999999999 99999999999999998 88899999999999999999999999996653110000
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccchhhhcccCCCCCCCCcccccccccceeeccc
Q 011119 401 FVCQWCLESMLKLLALQQRMWNLSCSAQIENNCNDNMEDSKDCSEKEILGFAVKDA 456 (493)
Q Consensus 401 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 456 (493)
...+.+ ..++...|.+++|.+...+.......+|+.++.+
T Consensus 81 ----~~~~~~------------~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~ 120 (149)
T PTZ00184 81 ----DSEEEI------------KEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDE 120 (149)
T ss_pred ----cHHHHH------------HHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHH
Confidence 000111 2334556788888888777766666667665544
No 43
>PF14658 EF-hand_9: EF-hand domain
Probab=98.55 E-value=2.9e-07 Score=69.55 Aligned_cols=60 Identities=27% Similarity=0.359 Sum_probs=55.0
Q ss_pred ccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCC-cceeHHHHHHHH
Q 011119 326 DAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGN-GVVNYEEFKVHA 390 (493)
Q Consensus 326 ~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~-G~i~~~eF~~~~ 390 (493)
.+|..||.++. |.|..++|...|++++.. .+++.++++|.+++|.+|. |.|+|+.|+.+|
T Consensus 2 ~~F~~fD~~~t-G~V~v~~l~~~Lra~~~~----~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM 62 (66)
T PF14658_consen 2 TAFDAFDTQKT-GRVPVSDLITYLRAVTGR----SPEESELQDLINELDPEGRDGSVNFDTFLAIM 62 (66)
T ss_pred cchhhcCCcCC-ceEeHHHHHHHHHHHcCC----CCcHHHHHHHHHHhCCCCCCceEeHHHHHHHH
Confidence 47999999999 999999999999998741 5788999999999999998 999999999777
No 44
>PTZ00183 centrin; Provisional
Probab=98.51 E-value=9.5e-08 Score=86.02 Aligned_cols=109 Identities=19% Similarity=0.226 Sum_probs=80.2
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHhhHHHHHH
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHAYFLSKLLIISF 401 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~ 401 (493)
..+..+|..+|.+++ |.|+..||..+|+.+|. .++.+++..++..+|.+++|.|+|+||+.++......
T Consensus 17 ~~~~~~F~~~D~~~~-G~i~~~e~~~~l~~~g~-----~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~----- 85 (158)
T PTZ00183 17 KEIREAFDLFDTDGS-GTIDPKELKVAMRSLGF-----EPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGE----- 85 (158)
T ss_pred HHHHHHHHHhCCCCC-CcccHHHHHHHHHHhCC-----CCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcC-----
Confidence 346778999999999 99999999999999998 8899999999999999999999999999655211000
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhhhcccCCCCCCCCcccccccccceeecc
Q 011119 402 VCQWCLESMLKLLALQQRMWNLSCSAQIENNCNDNMEDSKDCSEKEILGFAVKD 455 (493)
Q Consensus 402 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 455 (493)
....+.+ ..++...|.+++|.++-.+.......+|..+++
T Consensus 86 --~~~~~~l------------~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~ 125 (158)
T PTZ00183 86 --RDPREEI------------LKAFRLFDDDKTGKISLKNLKRVAKELGETITD 125 (158)
T ss_pred --CCcHHHH------------HHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCH
Confidence 0001111 122345678888888877776666666655443
No 45
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.48 E-value=1.1e-07 Score=95.12 Aligned_cols=108 Identities=15% Similarity=0.280 Sum_probs=88.8
Q ss_pred hccccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHhhHHH
Q 011119 319 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHAYFLSKLLI 398 (493)
Q Consensus 319 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~~~~~~~~~ 398 (493)
+....++..|+.||.+++ |.|+..+|.+.|..+.. | ....+-...++..+|.|.||.+||+||.+++
T Consensus 11 er~~r~~~lf~~lD~~~~-g~~d~~~l~k~~~~l~~---~-~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~-------- 77 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKND-GQVDLDQLEKGLEKLDH---P-KPNYEAAKMLFSAMDANRDGRVDYSEFKRYL-------- 77 (463)
T ss_pred HHHHHHHHHHHHhccCCC-CceeHHHHHHHHHhcCC---C-CCchHHHHHHHHhcccCcCCcccHHHHHHHH--------
Confidence 445678889999999999 99999999999999886 2 2566778889999999999999999999766
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccchhhhcccCCCCCCCCcccccccccceeeccc
Q 011119 399 ISFVCQWCLESMLKLLALQQRMWNLSCSAQIENNCNDNMEDSKDCSEKEILGFAVKDA 456 (493)
Q Consensus 399 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 456 (493)
.+.+ +++|+.+ ...|.|.+|.|+-.|...+..++|..+++.
T Consensus 78 --------~~~E-------~~l~~~F--~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de 118 (463)
T KOG0036|consen 78 --------DNKE-------LELYRIF--QSIDLEHDGKIDPNEIWRYLKDLGIQLSDE 118 (463)
T ss_pred --------HHhH-------HHHHHHH--hhhccccCCccCHHHHHHHHHHhCCccCHH
Confidence 2333 3666544 347788889999999999999999988854
No 46
>PTZ00184 calmodulin; Provisional
Probab=98.45 E-value=4e-07 Score=80.87 Aligned_cols=63 Identities=32% Similarity=0.526 Sum_probs=58.5
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
..+..+|..+|.+++ |+|+.+||+.+|+.+|. .++.++++.++..+|.+++|.|+|+||..+|
T Consensus 84 ~~~~~~F~~~D~~~~-g~i~~~e~~~~l~~~~~-----~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 84 EEIKEAFKVFDRDGN-GFISAAELRHVMTNLGE-----KLTDEEVDEMIREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHHHhhCCCCC-CeEeHHHHHHHHHHHCC-----CCCHHHHHHHHHhcCCCCCCcCcHHHHHHHH
Confidence 346788999999999 99999999999999988 8999999999999999999999999999666
No 47
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.43 E-value=6.9e-07 Score=82.73 Aligned_cols=69 Identities=25% Similarity=0.317 Sum_probs=64.1
Q ss_pred cccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHhhHH
Q 011119 323 AENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHAYFLSKLL 397 (493)
Q Consensus 323 ~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~~~~~~~~ 397 (493)
..+.+|+-+|+|++ |.|+..||+.+|.++|. .|+++-++.+++++|.-++|.|+|++|+.|+.+++.+.
T Consensus 125 ~Wr~vF~~~D~D~S-G~I~~sEL~~Al~~~Gy-----~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt 193 (221)
T KOG0037|consen 125 QWRNVFRTYDRDRS-GTIDSSELRQALTQLGY-----RLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLT 193 (221)
T ss_pred HHHHHHHhcccCCC-CcccHHHHHHHHHHcCc-----CCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHH
Confidence 46779999999999 99999999999999999 99999999999999988899999999999997777666
No 48
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.43 E-value=3.1e-07 Score=74.81 Aligned_cols=65 Identities=18% Similarity=0.310 Sum_probs=54.3
Q ss_pred ccccccccccccccC--CCCcceeHHHHHHHHH-HhhcCCCCCCCC----HHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 320 ASLAENDAFAFFKAD--NNGDVITHSAFCEALR-QVNLAGLPYGLS----FQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 320 ~~~~~~~~F~~~D~d--~~~G~I~~~el~~~l~-~lg~~g~~~~~~----~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
....+...|..++.. .+ |+|+.+||+.+|. .+|. .++ +++++.|+..+|.|++|.|+|+||+.+|
T Consensus 6 ~i~~~~~~f~~y~~~~~~~-~~Is~~El~~ll~~~~g~-----~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~ 77 (88)
T cd05030 6 AIETIINVFHQYSVRKGHP-DTLYKKEFKQLVEKELPN-----FLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLV 77 (88)
T ss_pred HHHHHHHHHHHHhccCCCc-ccCCHHHHHHHHHHHhhH-----hhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence 344566678888755 35 8999999999997 5666 666 8999999999999999999999999666
No 49
>PTZ00183 centrin; Provisional
Probab=98.43 E-value=4.6e-07 Score=81.52 Aligned_cols=63 Identities=21% Similarity=0.309 Sum_probs=58.9
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
..++.+|+.+|.+++ |.|+.+||..+|..+|. .++.++++.++..+|.|++|.|+|+||+.+|
T Consensus 90 ~~l~~~F~~~D~~~~-G~i~~~e~~~~l~~~~~-----~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 152 (158)
T PTZ00183 90 EEILKAFRLFDDDKT-GKISLKNLKRVAKELGE-----TITDEELQEMIDEADRNGDGEISEEEFYRIM 152 (158)
T ss_pred HHHHHHHHHhCCCCC-CcCcHHHHHHHHHHhCC-----CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 356789999999999 99999999999999998 8999999999999999999999999999666
No 50
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.41 E-value=5.9e-07 Score=78.43 Aligned_cols=86 Identities=15% Similarity=0.199 Sum_probs=72.3
Q ss_pred CCCccchhhHHHHHHHHhhhhhhccccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCC
Q 011119 297 SRKPLQASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVD 376 (493)
Q Consensus 297 ~~~p~~Ts~~e~~l~~id~il~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d 376 (493)
.+...||-|...|-..+.. ...+..+..+|+.||.+++ |.|..+.|+++|...|. .++++||++|+..+-.|
T Consensus 78 ~gPINft~FLTmfGekL~g--tdpe~~I~~AF~~FD~~~~-G~I~~d~lre~Ltt~gD-----r~~~eEV~~m~r~~p~d 149 (171)
T KOG0031|consen 78 PGPINFTVFLTMFGEKLNG--TDPEEVILNAFKTFDDEGS-GKIDEDYLRELLTTMGD-----RFTDEEVDEMYREAPID 149 (171)
T ss_pred CCCeeHHHHHHHHHHHhcC--CCHHHHHHHHHHhcCccCC-CccCHHHHHHHHHHhcc-----cCCHHHHHHHHHhCCcc
Confidence 4456777666555444432 3556678899999999999 99999999999999999 99999999999999999
Q ss_pred CCcceeHHHHHHHH
Q 011119 377 GNGVVNYEEFKVHA 390 (493)
Q Consensus 377 ~~G~i~~~eF~~~~ 390 (493)
..|.|||.+|..++
T Consensus 150 ~~G~~dy~~~~~~i 163 (171)
T KOG0031|consen 150 KKGNFDYKAFTYII 163 (171)
T ss_pred cCCceeHHHHHHHH
Confidence 99999999999555
No 51
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.38 E-value=6.6e-07 Score=76.85 Aligned_cols=60 Identities=27% Similarity=0.424 Sum_probs=54.1
Q ss_pred cccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHH
Q 011119 323 AENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVH 389 (493)
Q Consensus 323 ~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~ 389 (493)
+..+.++.||++++ |.|...||+.+|..+|. .++++|++.++.-. .|.+|.|+|+.|++.
T Consensus 89 dfvegLrvFDkeg~-G~i~~aeLRhvLttlGe-----kl~eeEVe~Llag~-eD~nG~i~YE~fVk~ 148 (152)
T KOG0030|consen 89 DFVEGLRVFDKEGN-GTIMGAELRHVLTTLGE-----KLTEEEVEELLAGQ-EDSNGCINYEAFVKH 148 (152)
T ss_pred HHHHHHHhhcccCC-cceeHHHHHHHHHHHHh-----hccHHHHHHHHccc-cccCCcCcHHHHHHH
Confidence 45667899999999 99999999999999999 99999999999765 488999999999843
No 52
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.37 E-value=9.5e-07 Score=80.31 Aligned_cols=99 Identities=13% Similarity=0.128 Sum_probs=74.0
Q ss_pred CCCCccchhhHHHHHHHHhhhhhhccccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCC
Q 011119 296 QSRKPLQASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADV 375 (493)
Q Consensus 296 ~~~~p~~Ts~~e~~l~~id~il~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~ 375 (493)
......||.|.+.-...|+ ....+|..+|.+.| |+|+..||+.+|..||. +-|.=-++.||+++|.
T Consensus 81 ~kv~n~yteF~eFsrkqIk--------~~~~~Fk~yDe~rD-gfIdl~ELK~mmEKLga-----pQTHL~lK~mikeVde 146 (244)
T KOG0041|consen 81 LKVFNVYTEFSEFSRKQIK--------DAESMFKQYDEDRD-GFIDLMELKRMMEKLGA-----PQTHLGLKNMIKEVDE 146 (244)
T ss_pred ccccchhhhhhHHHHHHHH--------HHHHHHHHhccccc-ccccHHHHHHHHHHhCC-----chhhHHHHHHHHHhhc
Confidence 3444667777643333333 34568999999999 99999999999999999 8898889999999999
Q ss_pred CCCcceeHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 011119 376 DGNGVVNYEEFKVHAYFLSKLLIISFVCQWCLESML 411 (493)
Q Consensus 376 d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~e~~~ 411 (493)
|.||+|+|.||.-+. ++.....+.+++.+-...
T Consensus 147 d~dgklSfreflLIf---rkaaagEL~~ds~~~~LA 179 (244)
T KOG0041|consen 147 DFDGKLSFREFLLIF---RKAAAGELQEDSGLLRLA 179 (244)
T ss_pred ccccchhHHHHHHHH---HHHhccccccchHHHHHH
Confidence 999999999998332 444444444444433333
No 53
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.31 E-value=7e-07 Score=82.65 Aligned_cols=63 Identities=24% Similarity=0.379 Sum_probs=51.6
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHHh-hcCCCCCCCC--HHH----HHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQV-NLAGLPYGLS--FQE----TDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~l-g~~g~~~~~~--~~e----~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
..++=+|+++|.+++ |+|+.+||++++..+ |. ..+ +++ ++.++.++|.|+||+|+|+||...+
T Consensus 104 ~Kl~faF~vYD~~~~-G~I~reel~~iv~~~~~~-----~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v 173 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGD-GFISREELKQILRMMVGE-----NDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVV 173 (187)
T ss_pred HHHHHHHHHhcCCCC-CcCcHHHHHHHHHHHHcc-----CCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 356779999999999 999999999999985 43 333 444 5667889999999999999999444
No 54
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.31 E-value=6.8e-07 Score=76.42 Aligned_cols=59 Identities=12% Similarity=0.190 Sum_probs=51.1
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
..+.-+|..+|+|+| |+|+.+||..++ + ...+..+..++..+|.|+||.|+++||..++
T Consensus 48 ~~l~w~F~~lD~d~D-G~Ls~~EL~~~~----l-----~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 48 DPVGWMFNQLDGNYD-GKLSHHELAPIR----L-----DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHCCCCC-CcCCHHHHHHHH----c-----cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 345678999999999 999999999876 3 4557789999999999999999999999555
No 55
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.31 E-value=4.3e-07 Score=77.99 Aligned_cols=112 Identities=15% Similarity=0.125 Sum_probs=86.3
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCC--CCcceeHHHHHHHHHHHhhHHHH
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVD--GNGVVNYEEFKVHAYFLSKLLII 399 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d--~~G~i~~~eF~~~~~~~~~~~~~ 399 (493)
.+++++|..||..+| |+|+......+||++|+ ++|+.|+.+.+.+.+.+ +--.|+|++|+-+.-.++|-. .
T Consensus 11 ~e~ke~F~lfD~~gD-~ki~~~q~gdvlRalG~-----nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk-~ 83 (152)
T KOG0030|consen 11 EEFKEAFLLFDRTGD-GKISGSQVGDVLRALGQ-----NPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK-D 83 (152)
T ss_pred HHHHHHHHHHhccCc-ccccHHHHHHHHHHhcC-----CCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc-c
Confidence 567889999999999 99999999999999999 99999999999999888 557899999997664444432 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccchhhhcccCCCCCCCCcccccccccceeeccc
Q 011119 400 SFVCQWCLESMLKLLALQQRMWNLSCSAQIENNCNDNMEDSKDCSEKEILGFAVKDA 456 (493)
Q Consensus 400 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 456 (493)
+-.-++.+|.. +.+|++++|.|+..|.---+.++|=+++..
T Consensus 84 q~t~edfvegL----------------rvFDkeg~G~i~~aeLRhvLttlGekl~ee 124 (152)
T KOG0030|consen 84 QGTYEDFVEGL----------------RVFDKEGNGTIMGAELRHVLTTLGEKLTEE 124 (152)
T ss_pred cCcHHHHHHHH----------------HhhcccCCcceeHHHHHHHHHHHHhhccHH
Confidence 11111111111 246899999999988877777888776654
No 56
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.28 E-value=1.1e-06 Score=76.85 Aligned_cols=108 Identities=13% Similarity=0.121 Sum_probs=81.5
Q ss_pred hhccccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHhhHH
Q 011119 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHAYFLSKLL 397 (493)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~~~~~~~~ 397 (493)
+.+..+++++|.+.|+|+| |.|+.++|+..|..||. ..++++++.|+++ ..|-|+|--|+-++
T Consensus 28 q~QIqEfKEAF~~mDqnrD-G~IdkeDL~d~~aSlGk-----~~~d~elDaM~~E----a~gPINft~FLTmf------- 90 (171)
T KOG0031|consen 28 QSQIQEFKEAFNLMDQNRD-GFIDKEDLRDMLASLGK-----IASDEELDAMMKE----APGPINFTVFLTMF------- 90 (171)
T ss_pred HHHHHHHHHHHHHHhccCC-CcccHHHHHHHHHHcCC-----CCCHHHHHHHHHh----CCCCeeHHHHHHHH-------
Confidence 4556678999999999999 99999999999999999 8999999999998 56899999999555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccchhhhcccCCCCCCCCcccccccccceeec
Q 011119 398 IISFVCQWCLESMLKLLALQQRMWNLSCSAQIENNCNDNMEDSKDCSEKEILGFAVK 454 (493)
Q Consensus 398 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 454 (493)
..++..-++-+.+.. .+...|+++.|.|.+.....-+...|-+.+
T Consensus 91 GekL~gtdpe~~I~~------------AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~ 135 (171)
T KOG0031|consen 91 GEKLNGTDPEEVILN------------AFKTFDDEGSGKIDEDYLRELLTTMGDRFT 135 (171)
T ss_pred HHHhcCCCHHHHHHH------------HHHhcCccCCCccCHHHHHHHHHHhcccCC
Confidence 111111222222221 233568889999988877777777776544
No 57
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.06 E-value=5.3e-06 Score=52.58 Aligned_cols=26 Identities=35% Similarity=0.667 Sum_probs=24.2
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 365 ETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 365 e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
|++++++.+|+|+||.|+|+||+.+|
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~ 26 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMM 26 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 68899999999999999999999666
No 58
>PLN02964 phosphatidylserine decarboxylase
Probab=98.05 E-value=4.9e-06 Score=90.36 Aligned_cols=59 Identities=14% Similarity=0.231 Sum_probs=32.7
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHHhh-cCCCCCCCCHHH---HHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVN-LAGLPYGLSFQE---TDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg-~~g~~~~~~~~e---~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
.+++++|..+|+|++ |+| +..+++.+| . .+++++ +++|+..+|.|++|.|+|+||+.+|
T Consensus 143 ~elkeaF~lfD~dgd-G~i----Lg~ilrslG~~-----~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL 205 (644)
T PLN02964 143 ESACESFDLLDPSSS-NKV----VGSIFVSCSIE-----DPVETERSFARRILAIVDYDEDGQLSFSEFSDLI 205 (644)
T ss_pred HHHHHHHHHHCCCCC-CcC----HHHHHHHhCCC-----CCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence 344555556666655 554 555555555 3 455544 5555555566666666666665444
No 59
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.04 E-value=9.1e-06 Score=81.71 Aligned_cols=67 Identities=18% Similarity=0.352 Sum_probs=62.9
Q ss_pred hhccccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
..++.++.+.|+..|.+.| |.|+.+|+.+.|+.+|. ++++++++.+++.+|+||++.|+++||...+
T Consensus 78 ~~~E~~l~~~F~~iD~~hd-G~i~~~Ei~~~l~~~gi-----~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ 144 (463)
T KOG0036|consen 78 DNKELELYRIFQSIDLEHD-GKIDPNEIWRYLKDLGI-----QLSDEKAAKFFEHMDKDGKATIDLEEWRDHL 144 (463)
T ss_pred HHhHHHHHHHHhhhccccC-CccCHHHHHHHHHHhCC-----ccCHHHHHHHHHHhccCCCeeeccHHHHhhh
Confidence 4566778899999999999 99999999999999999 9999999999999999999999999999776
No 60
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.93 E-value=1.6e-05 Score=64.51 Aligned_cols=65 Identities=11% Similarity=0.088 Sum_probs=49.4
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHH-hhc-CCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQ-VNL-AGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~-lg~-~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
..+..+|..+-. +. |.++..||+..|++ ++- .+. .-+++.++++++.+|.|+||.|||+||..++
T Consensus 8 ~~lI~~FhkYaG-~~-~tLsk~Elk~Ll~~Elp~~l~~--~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv 74 (91)
T cd05024 8 EKMMLTFHKFAG-EK-NYLNRDDLQKLMEKEFSEFLKN--QNDPMAVDKIMKDLDDCRDGKVGFQSFFSLI 74 (91)
T ss_pred HHHHHHHHHHcC-CC-CcCCHHHHHHHHHHHhHHHHcC--CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 345556766652 23 79999999999976 431 011 4468889999999999999999999999665
No 61
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.89 E-value=4.3e-05 Score=66.22 Aligned_cols=64 Identities=27% Similarity=0.480 Sum_probs=54.4
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHH----HHHHHhhCCCCCcceeHHHHHHHH
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQET----DDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~----~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
+...=+|+++|-|+| ++|..++|...++.|--. .++++|+ +.+|.++|.||||+++|.||..++
T Consensus 108 lK~~YAFkIYDfd~D-~~i~~~DL~~~l~~lTr~----eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 108 LKAKYAFKIYDFDGD-EFIGHDDLEKTLTSLTRD----ELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVI 175 (189)
T ss_pred hhhhheeEEeecCCC-CcccHHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence 445668999999999 999999999999987431 6888885 568889999999999999998555
No 62
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.85 E-value=4e-05 Score=77.50 Aligned_cols=68 Identities=21% Similarity=0.257 Sum_probs=59.4
Q ss_pred hhccccccccccccccCCCCcceeHHHHHHHHHHhhcCCC-CCCCCHHHHHHHHHhhCCCCCcceeHHHHHH
Q 011119 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGL-PYGLSFQETDDLWAQADVDGNGVVNYEEFKV 388 (493)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~-~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~ 388 (493)
......+..+|++.|+|++ |.|+.+||+.+.+-++- | +-.++++++-++-..+|.|+||.||++||+.
T Consensus 543 Yr~ks~LetiF~~iD~D~S-G~isldEF~~a~~l~~s--h~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLe 611 (631)
T KOG0377|consen 543 YRNKSSLETIFNIIDADNS-GEISLDEFRTAWKLLSS--HMNGAISDDEILELARSMDLNKDGKIDLNEFLE 611 (631)
T ss_pred HhchhhHHHHHHHhccCCC-CceeHHHHHHHHHHHHh--hcCCCcCHHHHHHHHHhhccCCCCcccHHHHHH
Confidence 3445567889999999999 99999999999988764 3 4479999999999999999999999999993
No 63
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.75 E-value=1.4e-05 Score=50.68 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=25.6
Q ss_pred ccccccccccCCCCcceeHHHHHHHHHHh
Q 011119 324 ENDAFAFFKADNNGDVITHSAFCEALRQV 352 (493)
Q Consensus 324 ~~~~F~~~D~d~~~G~I~~~el~~~l~~l 352 (493)
++.+|+.+|+|++ |+|+.+||+.+|+.|
T Consensus 2 ~~~~F~~~D~d~d-G~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFDKDGD-GKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHSTTSS-SEEEHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCC-CcCCHHHHHHHHHhC
Confidence 5678999999999 999999999999875
No 64
>PLN02964 phosphatidylserine decarboxylase
Probab=97.74 E-value=3.6e-05 Score=83.78 Aligned_cols=61 Identities=20% Similarity=0.415 Sum_probs=57.0
Q ss_pred ccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 324 ENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 324 ~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
+.++|..+|.|++ |.|+.+||..+|..++. ..+++++.++++.+|.|++|.|+++||..+|
T Consensus 181 i~~mf~~~D~Dgd-G~IdfdEFl~lL~~lg~-----~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL 241 (644)
T PLN02964 181 ARRILAIVDYDED-GQLSFSEFSDLIKAFGN-----LVAANKKEELFKAADLNGDGVVTIDELAALL 241 (644)
T ss_pred HHHHHHHhCCCCC-CeEcHHHHHHHHHHhcc-----CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHH
Confidence 5678999999999 99999999999999887 7899999999999999999999999999766
No 65
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.72 E-value=9.5e-05 Score=68.68 Aligned_cols=92 Identities=17% Similarity=0.258 Sum_probs=61.8
Q ss_pred CCCCCccchhhHHHHHHHHhhhhhhccccccccccccccCCCCcceeHHHHHHHHHHhh-cCCC---CC-CCC-HHHHHH
Q 011119 295 NQSRKPLQASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVN-LAGL---PY-GLS-FQETDD 368 (493)
Q Consensus 295 ~~~~~p~~Ts~~e~~l~~id~il~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg-~~g~---~~-~~~-~~e~~~ 368 (493)
+..+...+-.|..++--+.+..+.+. +.=+|+++|.|++ |+|+.+|+-.+++++. +.|. |. ..+ ++-++.
T Consensus 76 ~~dg~i~F~Efi~als~~~rGt~eek---l~w~F~lyD~dgd-G~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~ 151 (193)
T KOG0044|consen 76 NKDGTIDFLEFICALSLTSRGTLEEK---LKWAFRLYDLDGD-GYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDK 151 (193)
T ss_pred cCCCCcCHHHHHHHHHHHcCCcHHHH---hhhhheeecCCCC-ceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHH
Confidence 34455555555444433333333222 3345999999999 9999999999888743 3332 31 223 344788
Q ss_pred HHHhhCCCCCcceeHHHHHHHH
Q 011119 369 LWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 369 l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
+++++|.|+||.|+++||..-+
T Consensus 152 if~k~D~n~Dg~lT~eef~~~~ 173 (193)
T KOG0044|consen 152 IFSKMDKNKDGKLTLEEFIEGC 173 (193)
T ss_pred HHHHcCCCCCCcccHHHHHHHh
Confidence 9999999999999999999444
No 66
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.67 E-value=0.00011 Score=61.47 Aligned_cols=61 Identities=20% Similarity=0.370 Sum_probs=51.7
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHH
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHAY 391 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~~ 391 (493)
......|...|. ++ |+|+.++.+.+|.+-| |+.+.+.++|.-+|.|+||.+|++||...|.
T Consensus 10 ~~y~~~F~~l~~-~~-g~isg~~a~~~f~~S~-------L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QD-GKISGDQAREFFMKSG-------LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHCTSS-ST-TEEEHHHHHHHHHHTT-------SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CC-CeEeHHHHHHHHHHcC-------CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 446678888874 57 9999999999998765 5789999999999999999999999997774
No 67
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.52 E-value=0.00034 Score=50.00 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=38.0
Q ss_pred ceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHH
Q 011119 339 VITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVH 389 (493)
Q Consensus 339 ~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~ 389 (493)
+++.+|++..|+.+++ .++++-+..+++++|++++|.++.+||...
T Consensus 1 kmsf~Evk~lLk~~NI-----~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~F 46 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNI-----EMDDEYARQLFQECDKSQSGRLEGEEFEEF 46 (51)
T ss_dssp EBEHHHHHHHHHHTT---------HHHHHHHHHHH-SSSSSEBEHHHHHHH
T ss_pred CCCHHHHHHHHHHHcc-----CcCHHHHHHHHHHhcccCCCCccHHHHHHH
Confidence 4688999999999999 999999999999999999999999999833
No 68
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.50 E-value=5.1e-05 Score=48.85 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=25.4
Q ss_pred ccccccccccCCCCcceeHHHHHHHHH-Hhh
Q 011119 324 ENDAFAFFKADNNGDVITHSAFCEALR-QVN 353 (493)
Q Consensus 324 ~~~~F~~~D~d~~~G~I~~~el~~~l~-~lg 353 (493)
++.+|..+|+|++ |+|+.+||+.+|+ .+|
T Consensus 2 l~~~F~~~D~d~d-G~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGD-GFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSS-SEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCC-CcCcHHHHHHHHHHhcC
Confidence 5678999999999 9999999999999 576
No 69
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.34 E-value=0.00029 Score=42.94 Aligned_cols=24 Identities=38% Similarity=0.702 Sum_probs=21.3
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHH
Q 011119 366 TDDLWAQADVDGNGVVNYEEFKVH 389 (493)
Q Consensus 366 ~~~l~~~~D~d~~G~i~~~eF~~~ 389 (493)
++++++.+|.|+||.|+++||..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 467899999999999999999843
No 70
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.0023 Score=70.66 Aligned_cols=105 Identities=19% Similarity=0.130 Sum_probs=59.9
Q ss_pred CceEEEEEecCCceEEeeeeeecCccC------CceeEEEEEeeecccccccCCCCceEEEEEeeecCCCCCCchHHHHH
Q 011119 134 GDGLLTALHRDYFNVLNYRELLFNDFG------DRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVRLH 207 (493)
Q Consensus 134 ~~G~aIl~r~s~f~i~~~~~i~~~~~~------~r~~~~~~~~~~~~~~~~~~~~g~~v~V~ntHL~~~~~~~~~~~R~~ 207 (493)
+--+.+|.|....+.+..-......++ ++.+....+. + ....++++++||.+.- ..-.+|..
T Consensus 627 Gv~L~iF~r~~~~p~Ik~V~~~tkKTGfGG~tgNKGAVAIrf~--~--------~~TsfCFv~SHlAAG~--snv~ERn~ 694 (1080)
T KOG0566|consen 627 GVCLLLFIRPDHAPYIKDVAGDTKKTGFGGATGNKGAVAIRFV--Y--------HATSFCFVCSHLAAGQ--SNVEERNE 694 (1080)
T ss_pred eeeEEEEEcccccchhhhcccceeecccccccCCCceEEEEEE--e--------ccccEEEEeccccccc--chHhhhhh
Confidence 344566777777776655444333222 2322222222 1 5678999999997633 34456776
Q ss_pred HHHHHHHHHHHHHhhccCCCCCEEEEecCCCC---CCchhhHHHHh
Q 011119 208 QVYKILQYLELYQTENKLNHIPIILCGDWNGS---KRGHVYKFLRS 250 (493)
Q Consensus 208 Q~~~l~~~l~~~~~~~~~~~~PvIL~GDFN~~---p~s~~~~~L~~ 250 (493)
--..|.+-+.--....-..+..|+.|||||-. +.+.+-+.++.
T Consensus 695 DY~tI~r~l~Fp~Gr~I~~HD~ifW~GDFNYRI~l~nEEVr~~v~~ 740 (1080)
T KOG0566|consen 695 DYKTIARKLRFPRGRMIFSHDYIFWLGDFNYRIDLSNEEVRRLVRN 740 (1080)
T ss_pred hHHHHHHhccccCCccccCCceEEEecccceeecCCHHHHHHHHHh
Confidence 66666665542222111246679999999953 44555555533
No 71
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.27 E-value=0.00038 Score=64.71 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=57.4
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHhhHH
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHAYFLSKLL 397 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~~~~~~~~ 397 (493)
.-...+|+.||+|++ |.|+..||-.+|..+-- +-.++-++-.++..|.||||.|+++|+..++..+-+++
T Consensus 64 ~y~~~vF~~fD~~~d-g~i~F~Efi~als~~~r-----Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~ 133 (193)
T KOG0044|consen 64 KYAELVFRTFDKNKD-GTIDFLEFICALSLTSR-----GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMT 133 (193)
T ss_pred HHHHHHHHHhcccCC-CCcCHHHHHHHHHHHcC-----CcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHc
Confidence 345678999999999 99999999888887654 55566677889999999999999999997775554444
No 72
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.08 E-value=0.0008 Score=69.77 Aligned_cols=78 Identities=19% Similarity=0.220 Sum_probs=62.5
Q ss_pred hccccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHhhHHH
Q 011119 319 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHAYFLSKLLI 398 (493)
Q Consensus 319 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~~~~~~~~~ 398 (493)
....++.+.|...| |++ |+|+..|+..++.+.+... -.+..+|+++++...+.|.+|.|+|+||+.++.-+++-.+
T Consensus 16 ~El~~l~~kF~~~d-~~~-G~v~~~~l~~~f~k~~~~~--g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~~~ 91 (627)
T KOG0046|consen 16 EELRELKEKFNKLD-DQK-GYVTVYELPDAFKKAKLPL--GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSKDI 91 (627)
T ss_pred HHHHHHHHHHHhhc-CCC-CeeehHHhHHHHHHhcccc--cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhhhh
Confidence 44556788899999 898 9999999999999987611 1345899999999999999999999999976654444444
Q ss_pred HH
Q 011119 399 IS 400 (493)
Q Consensus 399 ~~ 400 (493)
++
T Consensus 92 ~k 93 (627)
T KOG0046|consen 92 AK 93 (627)
T ss_pred hh
Confidence 33
No 73
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.01 E-value=0.00072 Score=69.92 Aligned_cols=49 Identities=20% Similarity=0.468 Sum_probs=43.5
Q ss_pred cccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 323 AENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 323 ~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
.+..+|+.+|.|++ |.|+.+||. + ++.|+..+|.|+||.|+++||...+
T Consensus 335 ~l~~aF~~~D~dgd-G~Is~~E~~------~------------~~~~F~~~D~d~DG~Is~eEf~~~~ 383 (391)
T PRK12309 335 AAQEIFRLYDLDGD-GFITREEWL------G------------SDAVFDALDLNHDGKITPEEMRAGL 383 (391)
T ss_pred HHHHHHHHhCCCCC-CcCcHHHHH------H------------HHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 46789999999999 999999993 1 4679999999999999999999666
No 74
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.0025 Score=53.17 Aligned_cols=60 Identities=28% Similarity=0.493 Sum_probs=47.9
Q ss_pred cccccccCCCCcceeHHHHHHHHHHhh---cCCC-CCCC-CHHHHHHHHHh----hCCCCCcceeHHHHH
Q 011119 327 AFAFFKADNNGDVITHSAFCEALRQVN---LAGL-PYGL-SFQETDDLWAQ----ADVDGNGVVNYEEFK 387 (493)
Q Consensus 327 ~F~~~D~d~~~G~I~~~el~~~l~~lg---~~g~-~~~~-~~~e~~~l~~~----~D~d~~G~i~~~eF~ 387 (493)
.|...|-|++ |+|+--||..++.-.- .-|| |.|+ ++.|++.||.. -|.|+||.|||-||.
T Consensus 72 YF~MHDldkn-n~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEfl 140 (144)
T KOG4065|consen 72 YFSMHDLDKN-NFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFL 140 (144)
T ss_pred hhhhhccCcC-CcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHH
Confidence 5888899999 9999999999987642 3466 6664 56777766654 588999999999998
No 75
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.0014 Score=64.49 Aligned_cols=106 Identities=15% Similarity=0.180 Sum_probs=75.6
Q ss_pred HHhhhh-hhccccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 312 IIKCQL-QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 312 ~id~il-~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
..++.. .+....+..++..+|.+++ |+|+.+||+..+.+.-. ..-.+++..-|...|.|.||.|+|+|++..+
T Consensus 66 ~fd~l~~ee~~~rl~~l~~~iD~~~D-gfv~~~El~~wi~~s~k-----~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~ 139 (325)
T KOG4223|consen 66 EFDQLTPEESQERLGKLVPKIDSDSD-GFVTESELKAWIMQSQK-----KYVVEEAARRWDEYDKNKDGFITWEEYLPQT 139 (325)
T ss_pred hhhhhCcchhHHHHHHHHhhhcCCCC-CceeHHHHHHHHHHHHH-----HHHHHHHHHHHHHhccCccceeeHHHhhhhh
Confidence 344443 4455667888999999998 99999999998776554 4556778888999999999999999998666
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 011119 391 YFLSKLLIISFVCQWCLESMLKLLALQQRMWNLS 424 (493)
Q Consensus 391 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 424 (493)
....- ........+.-+.-.|++.+.++.|+..
T Consensus 140 ~~~~~-~~~~~~d~e~~~~~~km~~rDe~rFk~A 172 (325)
T KOG4223|consen 140 YGRVD-LPDEFPDEEDNEEYKKMIARDEERFKAA 172 (325)
T ss_pred hhccc-CccccccchhcHHHHHHHHHHHHHHhhc
Confidence 43221 1111222333366778888888888754
No 76
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.0019 Score=63.53 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=45.8
Q ss_pred ccccccccCCCCcceeHHHHHHHHHHhhcCCCCCC---CCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 326 DAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYG---LSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 326 ~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~---~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
+-|+..|.|++ |.+|.+||...| ||+. +.+-=|.+-+..+|+||||.|+++||+.=|
T Consensus 167 ~rFk~AD~d~d-g~lt~EEF~aFL-------HPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~ 226 (325)
T KOG4223|consen 167 ERFKAADQDGD-GSLTLEEFTAFL-------HPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDL 226 (325)
T ss_pred HHHhhcccCCC-CcccHHHHHhcc-------ChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHH
Confidence 35899999999 999999999887 4433 223336777888999999999999999444
No 77
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.73 E-value=0.00076 Score=41.11 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.4
Q ss_pred cccccccccCCCCcceeHHHHHHHH
Q 011119 325 NDAFAFFKADNNGDVITHSAFCEAL 349 (493)
Q Consensus 325 ~~~F~~~D~d~~~G~I~~~el~~~l 349 (493)
+++|+.+|.|++ |.|+.+||.+++
T Consensus 2 ~~~F~~~D~d~D-G~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGD-GKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSS-SEEEHHHHHHHH
T ss_pred HHHHHHHcCCCC-CcCCHHHHHHHC
Confidence 467999999999 999999999864
No 78
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.62 E-value=0.0029 Score=40.54 Aligned_cols=26 Identities=23% Similarity=0.544 Sum_probs=22.4
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 365 ETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 365 e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
+++.++..+|.|+||.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l 26 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAIL 26 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHH
Confidence 47889999999999999999999665
No 79
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=96.44 E-value=0.0051 Score=52.18 Aligned_cols=87 Identities=20% Similarity=0.291 Sum_probs=36.4
Q ss_pred EEEEEeeecCCCCCCchHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEecCCCCCC------------chhhHHHHhCCc
Q 011119 186 ILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKR------------GHVYKFLRSQGF 253 (493)
Q Consensus 186 v~V~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~PvIL~GDFN~~p~------------s~~~~~L~~~G~ 253 (493)
|.|+|++. ||.. ....+.+.+.++.... ...++||+||||.... ....+++.+.++
T Consensus 1 i~i~~vY~--pp~~--------~~~~~~~~l~~~~~~~--~~~~~Ii~GDFN~~~~~w~~~~~~~~~~~~l~~~~~~~~l 68 (119)
T PF14529_consen 1 ITIISVYA--PPSS--------EREEFFDQLRQLLKNL--PPAPIIIGGDFNAHHPNWDSSNTNSRRGEQLLDWLDSHNL 68 (119)
T ss_dssp EEEEEEE----TTS---------CHHHHHHHHHHHHCC--TTSSEEEEEE-----GGGT-SCHHHHHHHHHHHHHHHCTE
T ss_pred CEEEEEEC--CCCc--------cHHHHHHHHHHHHHhC--CCCCEEEEeECCCCchhhhhccccchhHHHHHHHhhhcee
Confidence 46777666 3322 2233344444444432 1228999999998421 112334444454
Q ss_pred eecccccCCCCCCCCCcccccccCCCCCCcccccceeccCCCC
Q 011119 254 VSSYDVAHQYTDGDADAHKWVSHRNHRGNICGVDFIWLRNPNQ 296 (493)
Q Consensus 254 ~~s~~~~~~~~~~~~~~~~w~s~~~~~~~~~~iD~Ifl~~~~~ 296 (493)
...... ....+|..... ..+||++|.+....
T Consensus 69 ~~~~~~--------~~~~T~~~~~~----~s~iD~~~~s~~~~ 99 (119)
T PF14529_consen 69 VDLNPP--------GRPPTFISNSH----GSRIDLILTSDNLL 99 (119)
T ss_dssp EE---T--------T---SEEECCC----EE--EEEEEECCGC
T ss_pred eeeecC--------CCCCcccCCCC----CceEEEEEECChHH
Confidence 432110 11234444322 56899999987643
No 80
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.24 E-value=0.0011 Score=56.51 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=39.7
Q ss_pred cccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHH
Q 011119 325 NDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKV 388 (493)
Q Consensus 325 ~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~ 388 (493)
.=.|..+|.|+| |.++..|++.+...| ...+.-+..++..+|.|+||.|++.|+..
T Consensus 57 ~W~F~~LD~n~d-~~L~~~El~~l~~~l-------~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 57 HWKFCQLDRNKD-GVLDRSELKPLRRPL-------MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHH--T-S-SEE-TTTTGGGGSTT-------STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhHhhhcCCCC-CccCHHHHHHHHHHH-------hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 334889999999 999999999876544 12334578899999999999999999973
No 81
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.21 E-value=0.0098 Score=60.76 Aligned_cols=96 Identities=20% Similarity=0.185 Sum_probs=58.1
Q ss_pred cceeccCCCCCCCccchhhHHHHHHHHhhhhhhccccccccccccccCCCCcceeHHHHHHHHHH------hhcCCCCCC
Q 011119 287 DFIWLRNPNQSRKPLQASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQ------VNLAGLPYG 360 (493)
Q Consensus 287 D~Ifl~~~~~~~~p~~Ts~~e~~l~~id~il~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~------lg~~g~~~~ 360 (493)
|+||.. -..++...|+.|. |+- .++.......+-+|+.||.||+ |-|+.+||..+.+- +|. +|-..
T Consensus 204 ~siF~~-lg~~GLIsfSdYi--FLl---TlLS~p~~~F~IAFKMFD~dgn-G~IdkeEF~~v~~li~sQ~~~g~-~hrd~ 275 (489)
T KOG2643|consen 204 DSIFYK-LGESGLISFSDYI--FLL---TLLSIPERNFRIAFKMFDLDGN-GEIDKEEFETVQQLIRSQTSVGV-RHRDH 275 (489)
T ss_pred CeeEEE-cCCCCeeeHHHHH--HHH---HHHccCcccceeeeeeeecCCC-CcccHHHHHHHHHHHHhccccce-ecccC
Confidence 455542 2344555555543 111 2234445567779999999999 99999999887642 221 12111
Q ss_pred CCHH-----HHHH--HHHhhCCCCCcceeHHHHHHHH
Q 011119 361 LSFQ-----ETDD--LWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 361 ~~~~-----e~~~--l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
++.. ++.. ..--+-++|+|+++++||++.|
T Consensus 276 ~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~ 312 (489)
T KOG2643|consen 276 FTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQ 312 (489)
T ss_pred ccccceehhhhhhhHHHHhhccCCCccccHHHHHHHH
Confidence 2211 2222 2224689999999999999666
No 82
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=95.93 E-value=0.014 Score=54.13 Aligned_cols=103 Identities=15% Similarity=0.167 Sum_probs=67.5
Q ss_pred ccccccccccCCCCcc-eeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHhhHHHHHHH
Q 011119 324 ENDAFAFFKADNNGDV-ITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHAYFLSKLLIISFV 402 (493)
Q Consensus 324 ~~~~F~~~D~d~~~G~-I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~ 402 (493)
...+++.||.+++ |. |+.++|-.+|...-. .....+.++-.++..|.+++|.|+.+|+.+++..+--....+
T Consensus 68 ~~rI~~~f~~~~~-~~~v~F~~Fv~~ls~f~~----~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~-- 140 (187)
T KOG0034|consen 68 ADRIIDRFDTDGN-GDPVDFEEFVRLLSVFSP----KASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM-- 140 (187)
T ss_pred HHHHHHHHhccCC-CCccCHHHHHHHHhhhcC----CccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc--
Confidence 3567889999988 77 999999999876543 233344788899999999999999999997773222221111
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchhhhcccCCCCCCCCcccc
Q 011119 403 CQWCLESMLKLLALQQRMWNLSCSAQIENNCNDNMEDSKDCS 444 (493)
Q Consensus 403 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (493)
.++.++.|. .. .....|.|++|.|+-.|.+.
T Consensus 141 ~~e~~~~i~----------d~-t~~e~D~d~DG~IsfeEf~~ 171 (187)
T KOG0034|consen 141 SDEQLEDIV----------DK-TFEEADTDGDGKISFEEFCK 171 (187)
T ss_pred hHHHHHHHH----------HH-HHHHhCCCCCCcCcHHHHHH
Confidence 122222222 11 12245788888887666543
No 83
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.54 E-value=0.01 Score=68.21 Aligned_cols=83 Identities=18% Similarity=0.283 Sum_probs=63.7
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCC--CHH-----HHHHHHHhhCCCCCcceeHHHHHHHHHHHh
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGL--SFQ-----ETDDLWAQADVDGNGVVNYEEFKVHAYFLS 394 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~--~~~-----e~~~l~~~~D~d~~G~i~~~eF~~~~~~~~ 394 (493)
.+..-+|..||++.+ |.++..+|+.+|+.+|. .+ -++ ++++++.-+|++.+|.|+..+|..+|. +
T Consensus 2253 ~EFs~~fkhFDkek~-G~Ldhq~F~sCLrslgY-----~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi--~ 2324 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKN-GRLDHQHFKSCLRSLGY-----DLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMI--S 2324 (2399)
T ss_pred HHHHHHHHHhchhhc-cCCcHHHHHHHHHhcCC-----CCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHH--h
Confidence 456778999999999 99999999999999997 44 233 789999999999999999999997773 3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 011119 395 KLLIISFVCQWCLESMLKL 413 (493)
Q Consensus 395 ~~~~~~~~~~~~~e~~~~~ 413 (493)
+.. .-++....+|.--|.
T Consensus 2325 ~ET-eNI~s~~eIE~Afra 2342 (2399)
T KOG0040|consen 2325 KET-ENILSSEEIEDAFRA 2342 (2399)
T ss_pred ccc-ccccchHHHHHHHHH
Confidence 332 223333345544443
No 84
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.25 E-value=0.022 Score=34.30 Aligned_cols=26 Identities=35% Similarity=0.598 Sum_probs=22.8
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 365 ETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 365 e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
|++.+++.+|.+++|.|+++||..++
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHH
Confidence 46789999999999999999999554
No 85
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=95.05 E-value=0.11 Score=52.56 Aligned_cols=187 Identities=18% Similarity=0.204 Sum_probs=84.4
Q ss_pred HHHhhCCCcEEEEeeeccCchhHHHHHHHhhccCCccEEEeec-CCCC-CceEEEEEecCCceEEeeeeeec-CccCCce
Q 011119 87 DWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTFSLAR-TNNR-GDGLLTALHRDYFNVLNYRELLF-NDFGDRV 163 (493)
Q Consensus 87 ~~I~~~~pDIIcLQEV~~~~~~~~~~l~~~l~~~gY~~~~~~~-~~~~-~~G~aIl~r~s~f~i~~~~~i~~-~~~~~r~ 163 (493)
.++....+|++|+||..+.-..... .... ..||...+... .+.. ..|.+.+.+..+..+. ..+.. ......+
T Consensus 84 ~~~~~~l~d~~~~~~t~~~i~~~~~-~~~~--~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~~v~--~~~~~~~s~h~~~ 158 (335)
T KOG1294|consen 84 PEISSELRDLQCLLETKCTIDSGPC-SHPT--EKGYTHSLLSCASKKDGYSGEIDYSKFKPLKVH--YGFGAMGSDHRPV 158 (335)
T ss_pred hhccccchhhhhhhhccceeccCcc-eecc--cCCcccceeecccccCCccceeeeeecccceee--ecccccCCccCcc
Confidence 4566788999999998532111111 1112 34775444332 2222 2344444333222221 11111 1111223
Q ss_pred eEEEEEeeecccccccCCCCceEEEEEeeecCCCCCCchHHHHHHH--HHHHHHHHHHHhhcc---CCCCCEEEEecCCC
Q 011119 164 AQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVRLHQV--YKILQYLELYQTENK---LNHIPIILCGDWNG 238 (493)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~g~~v~V~ntHL~~~~~~~~~~~R~~Q~--~~l~~~l~~~~~~~~---~~~~PvIL~GDFN~ 238 (493)
+.++.++ -....++|+|+. +.....+++.-. +.+-..+++...+.. ....|++.|||.|.
T Consensus 159 g~~i~~e------------~e~~~l~~~y~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~v~~gd~nv 223 (335)
T KOG1294|consen 159 GRVIIAE------------FEIFILINTYVP---NIGGGLVNLVYRILDRWDKEIEEKRKKQSSSKNLKAPVVICGDLNV 223 (335)
T ss_pred ceEEEEe------------ecceeeccccCc---ccccccchhhhhhhhhhHHHHHHHhhhccccccccCcceecccccc
Confidence 3333222 245667777773 333333333322 233333333332221 22358999999997
Q ss_pred CCCch-------------------------hh-HHHHhCC-ceecccccCCCCCCCCCcccccccCC--CCCCcccccce
Q 011119 239 SKRGH-------------------------VY-KFLRSQG-FVSSYDVAHQYTDGDADAHKWVSHRN--HRGNICGVDFI 289 (493)
Q Consensus 239 ~p~s~-------------------------~~-~~L~~~G-~~~s~~~~~~~~~~~~~~~~w~s~~~--~~~~~~~iD~I 289 (493)
.+... .. ..+...| ++++|...+.-... --..|..-.+ .++--+++||+
T Consensus 224 s~~~i~~~~~~~~~~~~~~~~~~~t~e~R~~~~~~~~~~~~~iDt~r~~~~~~~~--~~t~Wk~~~~~r~~~~~~r~dy~ 301 (335)
T KOG1294|consen 224 SHEEIDPSKPLVSPAGNTLSNAGFTPEERDSFFAELLEKGPLIDTYRELHKDQKK--AYTFWKYMPNGRQRGHGERCDYI 301 (335)
T ss_pred chhhccccccccccccCCcCCCCCCHHHhhhHHHhhccCCcceeehhhhcCCccc--cccchhhccccccCCCCCceeEE
Confidence 64311 11 2233344 66666544432211 1123544333 22334678999
Q ss_pred eccCCC
Q 011119 290 WLRNPN 295 (493)
Q Consensus 290 fl~~~~ 295 (493)
.++++.
T Consensus 302 ~Vsk~~ 307 (335)
T KOG1294|consen 302 LVSKPG 307 (335)
T ss_pred EecCcC
Confidence 998874
No 86
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=94.98 E-value=0.092 Score=39.59 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=23.6
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHH
Q 011119 366 TDDLWAQADVDGNGVVNYEEFKVHAY 391 (493)
Q Consensus 366 ~~~l~~~~D~d~~G~i~~~eF~~~~~ 391 (493)
++++++.+|.|++|.|+.+||..++.
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~ 27 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALK 27 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHH
Confidence 67899999999999999999997763
No 87
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=94.68 E-value=0.097 Score=53.66 Aligned_cols=109 Identities=16% Similarity=0.274 Sum_probs=72.1
Q ss_pred hhccccccccccccccCCCCcceeHHHHHHHHHHh-hcCCCCC--------CCC-------------------HH-----
Q 011119 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQV-NLAGLPY--------GLS-------------------FQ----- 364 (493)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~l-g~~g~~~--------~~~-------------------~~----- 364 (493)
.+...++.+.|+..|.+++ |+|+.+....++..+ |+ |.|- +.+ -+
T Consensus 460 ~s~~sdL~~eF~~~D~~ks-G~lsis~Wa~~mE~i~~L-~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~s 537 (631)
T KOG0377|consen 460 RSHRSDLEDEFRKYDPKKS-GKLSISHWAKCMENITGL-NLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSS 537 (631)
T ss_pred HhhhhHHHHHHHhcChhhc-CeeeHHHHHHHHHHHhcC-CCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhH
Confidence 3444578889999999999 999999999998763 32 1111 000 01
Q ss_pred ----------HHHHHHHhhCCCCCcceeHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhcccCC
Q 011119 365 ----------ETDDLWAQADVDGNGVVNYEEFKVHAYFLSKLLIISFVCQWCLESMLKLLALQQRMWNLSCSAQIENNCN 434 (493)
Q Consensus 365 ----------e~~~l~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (493)
.++.++.-+|.|..|.|+.+||..++..+.+-+...+..+...+ ..+..|-|++
T Consensus 538 lvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~----------------la~~mD~NkD 601 (631)
T KOG0377|consen 538 LVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILE----------------LARSMDLNKD 601 (631)
T ss_pred HHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHH----------------HHHhhccCCC
Confidence 14567788999999999999999887655555533332221111 1134577888
Q ss_pred CCCCCCcccc
Q 011119 435 DNMEDSKDCS 444 (493)
Q Consensus 435 ~~~~~~~~~~ 444 (493)
|.|+-+|.-.
T Consensus 602 G~IDlNEfLe 611 (631)
T KOG0377|consen 602 GKIDLNEFLE 611 (631)
T ss_pred CcccHHHHHH
Confidence 8888777543
No 88
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=94.57 E-value=0.2 Score=54.08 Aligned_cols=57 Identities=25% Similarity=0.303 Sum_probs=35.5
Q ss_pred CCceEEEEEeeecCCCCCCchHHHHHHHHHHHHHHHHHHh---hc----cCCCCCEEEEecCCCC
Q 011119 182 GQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQT---EN----KLNHIPIILCGDWNGS 239 (493)
Q Consensus 182 ~g~~v~V~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~---~~----~~~~~PvIL~GDFN~~ 239 (493)
.+..|+++|+||.++........|..+...|++.+. +.. .. -.....+|++||||--
T Consensus 418 ~~Ts~cFVn~HLAAg~~~~~~~rRN~D~~~I~~~l~-F~~~~~~~~~~~I~dhD~vFWlGDLNYR 481 (621)
T PLN03191 418 FQSRLCFVCSHLTSGHKDGAEQRRNADVYEIIRRTR-FSSVLDTDQPQTIPSHDQIFWFGDLNYR 481 (621)
T ss_pred cCcEEEEEEeccccccccchHHHHHHHHHHHHhccc-cCcccccCCCccccccceEEEecCcccc
Confidence 578999999999775432223456677777766432 110 00 0124579999999954
No 89
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=94.31 E-value=0.028 Score=33.79 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=24.0
Q ss_pred ccccccccccCCCCcceeHHHHHHHHHH
Q 011119 324 ENDAFAFFKADNNGDVITHSAFCEALRQ 351 (493)
Q Consensus 324 ~~~~F~~~D~d~~~G~I~~~el~~~l~~ 351 (493)
++.+|..+|.+++ |.|+..||+.+++.
T Consensus 2 ~~~~f~~~d~~~~-g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGD-GKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCC-CcEeHHHHHHHHHh
Confidence 4568999999999 99999999999875
No 90
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=93.72 E-value=0.12 Score=58.91 Aligned_cols=78 Identities=23% Similarity=0.387 Sum_probs=65.7
Q ss_pred HHHHHHHHhhhhhhccccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHH
Q 011119 306 AEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEE 385 (493)
Q Consensus 306 ~e~~l~~id~il~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~e 385 (493)
.+.++..++.++.-....-.+.|+.+|.||. |.|+..||..+|..-. ..|..|++-++.-+..|.+..+||++
T Consensus 4041 vemilkffdmflklkdltssdtfkeydpdgk-giiskkdf~kame~~k------~ytqse~dfllscae~dend~~~y~d 4113 (5019)
T KOG2243|consen 4041 VEMILKFFDMFLKLKDLTSSDTFKEYDPDGK-GIISKKDFHKAMEGHK------HYTQSEIDFLLSCAEADENDMFDYED 4113 (5019)
T ss_pred HHHHHHHHHHHHHHhhccccccchhcCCCCC-ccccHHHHHHHHhccc------cchhHHHHHHHHhhccCccccccHHH
Confidence 3556666777666666777889999999999 9999999999997654 47889999999999999999999999
Q ss_pred HHHHH
Q 011119 386 FKVHA 390 (493)
Q Consensus 386 F~~~~ 390 (493)
|+.-.
T Consensus 4114 fv~rf 4118 (5019)
T KOG2243|consen 4114 FVDRF 4118 (5019)
T ss_pred HHHHh
Confidence 98544
No 91
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=93.57 E-value=0.033 Score=52.71 Aligned_cols=63 Identities=17% Similarity=0.309 Sum_probs=46.0
Q ss_pred cccccccccccCCCCcceeHHHHHHHHHH-hhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHH
Q 011119 323 AENDAFAFFKADNNGDVITHSAFCEALRQ-VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVH 389 (493)
Q Consensus 323 ~~~~~F~~~D~d~~~G~I~~~el~~~l~~-lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~ 389 (493)
.+..+|...|.|-+ |+||+.|+++-++. ... | ..-+.++-+..+..+|.||||.|+++||...
T Consensus 102 klmviFsKvDVNtD-rkisAkEmqrwImektaE--H-fqeameeSkthFraVDpdgDGhvsWdEykvk 165 (362)
T KOG4251|consen 102 KLMVIFSKVDVNTD-RKISAKEMQRWIMEKTAE--H-FQEAMEESKTHFRAVDPDGDGHVSWDEYKVK 165 (362)
T ss_pred HHHHHHhhcccCcc-ccccHHHHHHHHHHHHHH--H-HHHHHhhhhhheeeeCCCCCCceehhhhhhH
Confidence 45668999999999 99999999886543 332 0 0112344556777899999999999999743
No 92
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=92.60 E-value=0.33 Score=47.62 Aligned_cols=60 Identities=22% Similarity=0.311 Sum_probs=37.4
Q ss_pred CCceEEEEEeeecCCCC---------CCchHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEecCCCCCCchhh
Q 011119 182 GQQEILIVNTHLLFPHD---------SSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVY 245 (493)
Q Consensus 182 ~g~~v~V~ntHL~~~~~---------~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~PvIL~GDFN~~p~s~~~ 245 (493)
++..|.++|+||..... ..+...|..-...+++.+.... .+..|+++.||||---+...|
T Consensus 78 ~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~----~~~~~lF~fGDfNyRld~~~~ 146 (356)
T PTZ00312 78 GTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFI----SPSDPLFIFGDFNVRLDGHNL 146 (356)
T ss_pred CCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhcc----CCCCcEEEeccceeeeccccH
Confidence 67889999999965211 0123345554555554443332 257899999999987654444
No 93
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.21 E-value=0.21 Score=53.06 Aligned_cols=68 Identities=22% Similarity=0.268 Sum_probs=60.9
Q ss_pred ccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHhhHH
Q 011119 324 ENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHAYFLSKLL 397 (493)
Q Consensus 324 ~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~~~~~~~~ 397 (493)
.+.-|.++|.|+. |+++..++.++|+..+. +.+++.+.++++++|.+-+|.+...||.++|..+.+-.
T Consensus 595 ~~~rf~~lD~~k~-~~~~i~~v~~vlk~~~~-----~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~ 662 (680)
T KOG0042|consen 595 RKTRFAFLDADKK-AYQAIADVLKVLKSENV-----GWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGC 662 (680)
T ss_pred HHHHHHhhcchHH-HHHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCC
Confidence 3456899999999 99999999999999887 89999999999999999999999999998886665555
No 94
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=92.13 E-value=0.15 Score=36.80 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=26.0
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHH
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQ 351 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~ 351 (493)
.++..+|..+|.|++ |+|+.+||..++..
T Consensus 25 ~e~~~l~~~~D~~~~-G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 25 EEVDRLFREFDTDGD-GYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHHHTTSSS-SSEEHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCC-CCCCHHHHHHHHHh
Confidence 457889999999999 99999999999864
No 95
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.85 E-value=0.15 Score=55.52 Aligned_cols=69 Identities=20% Similarity=0.351 Sum_probs=57.3
Q ss_pred ccccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHhhH
Q 011119 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHAYFLSKL 396 (493)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~~~~~~~ 396 (493)
..+.++..|..+|+..+ |++|-..-+.+|-+-| |...++..+|.-.|.|+||+++-+||+-.|+.+...
T Consensus 193 ~klKY~QlFNa~Dktrs-G~Lsg~qaR~aL~qS~-------Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~liema 261 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRS-GYLSGQQARSALGQSG-------LPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIEMA 261 (1118)
T ss_pred hhhHHHHHhhhcccccc-cccccHHHHHHHHhcC-------CchhhHhhheeeeccCCCCcccHHHHHHHHHHHHHH
Confidence 44567889999999999 9999999998887655 567789999999999999999999999666544333
No 96
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=90.65 E-value=0.27 Score=39.09 Aligned_cols=62 Identities=18% Similarity=0.274 Sum_probs=47.4
Q ss_pred ccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCC----CCcceeHHHHHHHH
Q 011119 324 ENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVD----GNGVVNYEEFKVHA 390 (493)
Q Consensus 324 ~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d----~~G~i~~~eF~~~~ 390 (493)
+..+|..+-. +. +.||.++|+..|+.-.- -..++.+++.++|..+..+ ..+.+++++|..+|
T Consensus 2 i~~if~~ys~-~~-~~mt~~~f~~FL~~eQ~---~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 2 IEEIFRKYSS-DK-EYMTAEEFRRFLREEQG---EPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHCT-TS-SSEEHHHHHHHHHHTSS----TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred HHHHHHHHhC-CC-CcCCHHHHHHHHHHHhc---cccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 4556777744 55 89999999999987432 1136899999999998655 47999999999555
No 97
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=89.98 E-value=0.26 Score=40.41 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=24.3
Q ss_pred CCHHH---HHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 361 LSFQE---TDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 361 ~~~~e---~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
++.++ +.+.+..+|.|++|.|+++|+..+|
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l 36 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPIL 36 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence 45544 5667888999999999999999766
No 98
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=88.82 E-value=0.55 Score=49.03 Aligned_cols=119 Identities=16% Similarity=0.140 Sum_probs=75.4
Q ss_pred hhhhhhccccccccccccccCCCCcceeHHHHHHHHHHhhcCCC-CCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHH
Q 011119 314 KCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGL-PYGLSFQETDDLWAQADVDGNGVVNYEEFKVHAYF 392 (493)
Q Consensus 314 d~il~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~-~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~~~ 392 (493)
...+.....-...+|..||+.++ |.+|.+++.+++.++.+.-| |.+.+.+=|+..+. .+..-.++|.||.+++.
T Consensus 100 e~~lC~pDal~~~aFqlFDr~~~-~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg---~~~~r~~ny~~f~Q~lh- 174 (694)
T KOG0751|consen 100 ESVLCAPDALFEVAFQLFDRLGN-GEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFG---DIRKRHLNYAEFTQFLH- 174 (694)
T ss_pred HhhccCchHHHHHHHHHhcccCC-CceehHHHHHHHhccccccCCCccCCcchHHHHhh---hHHHHhccHHHHHHHHH-
Confidence 33343344445678999999999 99999999999999887544 56677766666443 34556799999986552
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhcccCCCCCCCCcccccccccceeecccccCchhhhc
Q 011119 393 LSKLLIISFVCQWCLESMLKLLALQQRMWNLSCSAQIENNCNDNMEDSKDCSEKEILGFAVKDAFLFPSEVEK 465 (493)
Q Consensus 393 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 465 (493)
+-..|.- ...+...|..++|.|.... .+.+=.+++.-+| ||-|+.
T Consensus 175 -----------~~~~E~~------------~qafr~~d~~~ng~is~Ld----fq~imvt~~~h~l-t~~v~~ 219 (694)
T KOG0751|consen 175 -----------EFQLEHA------------EQAFREKDKAKNGFISVLD----FQDIMVTIRIHLL-TPFVEE 219 (694)
T ss_pred -----------HHHHHHH------------HHHHHHhcccCCCeeeeec----hHhhhhhhhhhcC-CHHHhh
Confidence 1111211 2334456777777776543 3334445555554 665553
No 99
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=88.44 E-value=0.18 Score=51.80 Aligned_cols=57 Identities=21% Similarity=0.322 Sum_probs=45.3
Q ss_pred cccccccCCCCcceeHHHHHHHHHH-hhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 327 AFAFFKADNNGDVITHSAFCEALRQ-VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 327 ~F~~~D~d~~~G~I~~~el~~~l~~-lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
|..++-.-| +.|+..+|+++... .|. +|++.-++-++.-+|.|+||.++++||+.+|
T Consensus 394 Al~fy~~Ag--~~i~~~~f~raa~~vtGv-----eLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vm 451 (489)
T KOG2643|consen 394 ALRFYHMAG--ASIDEKTFQRAAKVVTGV-----ELSDHVVDVVFTIFDENNDGTLSHKEFLAVM 451 (489)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHHhcCc-----ccccceeeeEEEEEccCCCCcccHHHHHHHH
Confidence 444443333 68999999988876 577 8888777778888999999999999999777
No 100
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=88.12 E-value=1.6 Score=39.21 Aligned_cols=52 Identities=12% Similarity=0.271 Sum_probs=41.2
Q ss_pred cceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHH
Q 011119 338 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHAY 391 (493)
Q Consensus 338 G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~~ 391 (493)
..++..-|..+|+..|+.+. .++..+++-++..+-..+...|+|++|+..+.
T Consensus 17 ~~m~~~~F~Kl~kD~~i~d~--k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 17 TEMDSKNFAKLCKDCGIIDK--KLTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp SEEEHHHHHHHHHHTSS--S--SS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred ccccHHHHHHHHHHcCCCCC--CCchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 68999999999999887544 49999999999998777778899999996663
No 101
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=86.86 E-value=0.34 Score=48.85 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=45.2
Q ss_pred eEEEEEeeecCCCCCCchHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEecCCCCCCchhhHHH
Q 011119 185 EILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFL 248 (493)
Q Consensus 185 ~v~V~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~PvIL~GDFN~~p~s~~~~~L 248 (493)
.+.+.++|+.|.|- ....|..|.+.+++.+.+...- ..+.++|||||..|.+..|-.+
T Consensus 139 ~li~~~~~~f~~p~--~~~er~r~t~~~lnri~e~~~~----~w~~l~~~l~n~e~gd~~~va~ 196 (378)
T COG5239 139 GLILAVTHLFWHPY--GYYERFRQTYILLNRIGEKDNI----AWVCLFVGLFNKEPGDTPYVAN 196 (378)
T ss_pred hhhhhhhHhhcccc--eeehhhhHHHHHHHHHhhhhhc----chhheeeeeccCCCCCceeEEe
Confidence 47888999999874 4577999999999988775442 3678999999999987765443
No 102
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=86.30 E-value=1.7 Score=45.25 Aligned_cols=109 Identities=10% Similarity=0.069 Sum_probs=66.6
Q ss_pred cCCCCCCcccccceec---cCC--CCCCCccchhhHHHHHHHHhhhhhhccccccccccccccCCCCcceeHHHHHHHHH
Q 011119 276 HRNHRGNICGVDFIWL---RNP--NQSRKPLQASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALR 350 (493)
Q Consensus 276 ~~~~~~~~~~iD~Ifl---~~~--~~~~~p~~Ts~~e~~l~~id~il~~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~ 350 (493)
+.++.....-||.||- +.- ...+...|-.|.-.+++..+ ++....+.=.|+.+|.+++ |.|+..||+-..+
T Consensus 303 y~d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~---k~t~~SleYwFrclDld~~-G~Lt~~el~~fye 378 (493)
T KOG2562|consen 303 YGDHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED---KDTPASLEYWFRCLDLDGD-GILTLNELRYFYE 378 (493)
T ss_pred HhccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhcc---CCCccchhhheeeeeccCC-CcccHHHHHHHHH
Confidence 3344344344788886 111 12333444444333333322 3334456668999999999 9999999987665
Q ss_pred Hh---hcCCCCCCCCHHH-HHHHHHhhCCCCCcceeHHHHHH
Q 011119 351 QV---NLAGLPYGLSFQE-TDDLWAQADVDGNGVVNYEEFKV 388 (493)
Q Consensus 351 ~l---g~~g~~~~~~~~e-~~~l~~~~D~d~~G~i~~~eF~~ 388 (493)
.. -.++.+++++-++ +.+|+..+-.-..|+|+.++|+.
T Consensus 379 eq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 379 EQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 41 1233445566555 45687778777789999999983
No 103
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=84.98 E-value=6.6 Score=40.87 Aligned_cols=54 Identities=20% Similarity=0.166 Sum_probs=34.7
Q ss_pred CceEEEEEeeecCCCCCCchHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEecCCC
Q 011119 183 QQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNG 238 (493)
Q Consensus 183 g~~v~V~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~PvIL~GDFN~ 238 (493)
...++++|+||.+.- .....|..-.+.+...+.--....-.....++++||||.
T Consensus 164 ~t~~cFv~shlaag~--~N~eeR~~Dy~~I~~~i~f~~g~~I~~hdti~w~GDlNy 217 (460)
T COG5411 164 RTSFCFVNSHLAAGV--NNIEERIFDYRSIASNICFSRGLRIYDHDTIFWLGDLNY 217 (460)
T ss_pred cCCcEEEecchhccc--ccHHHHHHHHHHHHHheecCCCceecccceEEEecccCc
Confidence 467999999996632 345677777777776554221111123456999999994
No 104
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=84.89 E-value=0.71 Score=45.82 Aligned_cols=60 Identities=12% Similarity=0.173 Sum_probs=49.5
Q ss_pred cccccccccccCCCCcceeHHHHHHHHHH-hhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 323 AENDAFAFFKADNNGDVITHSAFCEALRQ-VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 323 ~~~~~F~~~D~d~~~G~I~~~el~~~l~~-lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
.++-+|+.|+.+.| |.++..+|..+|+. +|. ..=.+-.++..++...+|+|.|++|...|
T Consensus 297 iiq~afk~f~v~eD-g~~ge~~ls~ilq~~lgv-------~~l~v~~lf~~i~q~d~~ki~~~~f~~fa 357 (412)
T KOG4666|consen 297 IIQYAFKRFSVAED-GISGEHILSLILQVVLGV-------EVLRVPVLFPSIEQKDDPKIYASNFRKFA 357 (412)
T ss_pred HHHHHHHhcccccc-cccchHHHHHHHHHhcCc-------ceeeccccchhhhcccCcceeHHHHHHHH
Confidence 35668999999999 99999999998876 443 33346678999999999999999999665
No 105
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=83.81 E-value=2.9 Score=41.61 Aligned_cols=97 Identities=11% Similarity=0.161 Sum_probs=67.5
Q ss_pred ccceeccCCCCCCCccchhhHHHHHHHHhhhhh-------------hc-cccccccccccccCCCCcceeHHHHHH---H
Q 011119 286 VDFIWLRNPNQSRKPLQASWAEAVFSIIKCQLQ-------------KA-SLAENDAFAFFKADNNGDVITHSAFCE---A 348 (493)
Q Consensus 286 iD~Ifl~~~~~~~~p~~Ts~~e~~l~~id~il~-------------~~-~~~~~~~F~~~D~d~~~G~I~~~el~~---~ 348 (493)
+|-.-++..+.+.++..|.|...++..+..-+. .. +..+.=-|..+|+|.+ +.|...|++- +
T Consensus 283 ~dp~kvR~l~gC~e~KKteFL~~Ll~aL~Tdmv~s~~~as~gr~~e~DeeRvv~w~F~qLdkN~n-n~i~rrEwKpFK~~ 361 (421)
T KOG4578|consen 283 VDPKKVRRLNGCPEKKKTEFLTSLLDALKTDMVMSGINASNGRKSEPDEERVVHWYFNQLDKNSN-NDIERREWKPFKRV 361 (421)
T ss_pred cccccccccCCCCcchhhHHHHHHHHHHhhhhhhhcccccCCcccCCChhheeeeeeeeeccccc-CccchhhcchHHHH
Confidence 343345555778889999999888887754321 01 1123335899999999 9999999654 4
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 349 LRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 349 l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
|..... ...=.+.|++..|.|+|-+|++.|+..++
T Consensus 362 l~k~s~-------~rkC~rk~~~yCDlNkDKkISl~Ew~~CL 396 (421)
T KOG4578|consen 362 LLKKSK-------PRKCSRKFFKYCDLNKDKKISLDEWRGCL 396 (421)
T ss_pred HHhhcc-------HHHHhhhcchhcccCCCceecHHHHhhhh
Confidence 433221 12345679999999999999999999666
No 106
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=83.58 E-value=2 Score=42.35 Aligned_cols=64 Identities=23% Similarity=0.272 Sum_probs=44.5
Q ss_pred CCceEEEEEeeecC--------CCCC-CchHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEecCCCCCCchh-hHHHH
Q 011119 182 GQQEILIVNTHLLF--------PHDS-SLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHV-YKFLR 249 (493)
Q Consensus 182 ~g~~v~V~ntHL~~--------~~~~-~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~PvIL~GDFN~~p~s~~-~~~L~ 249 (493)
.+..+.+||.||.. +.++ .++..|..|+..++..+..-. .....+++.||||...++.. ...|.
T Consensus 167 ~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~~----~~~~~~fVfGdfNfrLds~s~ln~l~ 240 (391)
T KOG1976|consen 167 HGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEEG----LRNDAIFVFGDFNFRLDSTSLLNYLA 240 (391)
T ss_pred cCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhhc----cCceEEEEecccccccchHHHHHHHh
Confidence 68899999999932 1111 345678888888887776532 23557999999999887754 45553
No 107
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=83.01 E-value=3.5 Score=33.28 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=22.9
Q ss_pred HHHHHHHhhC-CCCCc-ceeHHHHHHHH
Q 011119 365 ETDDLWAQAD-VDGNG-VVNYEEFKVHA 390 (493)
Q Consensus 365 e~~~l~~~~D-~d~~G-~i~~~eF~~~~ 390 (493)
++.+.+..+| .|||| .|+.+||..+|
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll 36 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELI 36 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHH
Confidence 5778899998 89999 69999999777
No 108
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=82.46 E-value=2.1 Score=42.17 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=48.5
Q ss_pred hccccccccccccccCCCCcceeHHHHHHHHHH-hhcCCCCCCCCHH------H----HHHHHHhhCCCCCcceeHHHHH
Q 011119 319 KASLAENDAFAFFKADNNGDVITHSAFCEALRQ-VNLAGLPYGLSFQ------E----TDDLWAQADVDGNGVVNYEEFK 387 (493)
Q Consensus 319 ~~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~-lg~~g~~~~~~~~------e----~~~l~~~~D~d~~G~i~~~eF~ 387 (493)
......+..|.+.|.|+| |+++-.||...+.. |-.+=.|-+-.++ | -+.+|+++|.|.|-.|+.+||+
T Consensus 241 pn~fdPKTFF~LHD~NsD-GfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL 319 (442)
T KOG3866|consen 241 PNQFDPKTFFALHDLNSD-GFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFL 319 (442)
T ss_pred cccCCcchheeeeccCCc-ccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHH
Confidence 344677888999999999 99999999987754 3211111111111 1 1346788999999999999998
Q ss_pred H
Q 011119 388 V 388 (493)
Q Consensus 388 ~ 388 (493)
.
T Consensus 320 ~ 320 (442)
T KOG3866|consen 320 N 320 (442)
T ss_pred h
Confidence 3
No 109
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=81.81 E-value=4.5 Score=32.81 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=23.4
Q ss_pred HHHHHHHhhCC-CCCcceeHHHHHHHH
Q 011119 365 ETDDLWAQADV-DGNGVVNYEEFKVHA 390 (493)
Q Consensus 365 e~~~l~~~~D~-d~~G~i~~~eF~~~~ 390 (493)
.+.+.+..+|. +++|.|+.+||+.+|
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll 35 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELL 35 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHH
Confidence 57788999999 999999999999776
No 110
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=81.77 E-value=1.3 Score=31.49 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.0
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 366 TDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 366 ~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
+..++..+|.|++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l 26 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAAL 26 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 5678899999999999999999555
No 111
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=79.83 E-value=5.4 Score=36.35 Aligned_cols=67 Identities=16% Similarity=0.296 Sum_probs=51.0
Q ss_pred cccccccccccCCCCcceeHHHHHHHHHHhhc-----------------------------------------CCC---C
Q 011119 323 AENDAFAFFKADNNGDVITHSAFCEALRQVNL-----------------------------------------AGL---P 358 (493)
Q Consensus 323 ~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~-----------------------------------------~g~---~ 358 (493)
.+++-..+||.|+| |.|.+.|--..+++||. +|. .
T Consensus 8 ~LQqHvaFFDrd~D-GiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 8 VLQQHVAFFDRDKD-GIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred HHhhhhceeCCCCC-eeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 35556789999999 99999999888888771 111 0
Q ss_pred C----CCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 359 Y----GLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 359 ~----~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
| .+.++..++|+.+.++.+.+.+++.|...|+
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~ 122 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRML 122 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Confidence 1 1445678999999998888899999998665
No 112
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=79.56 E-value=1.8 Score=43.27 Aligned_cols=56 Identities=9% Similarity=0.064 Sum_probs=47.3
Q ss_pred cccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 325 NDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 325 ~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
.=.|..+|.|.| |.++.+||+.+-. .-.+.=|+.+|...|...||.|+-.|+..+.
T Consensus 253 gWMFnklD~N~D-l~Ld~sEl~~I~l---------dknE~CikpFfnsCD~~kDg~iS~~EWC~CF 308 (434)
T KOG3555|consen 253 GWMFNKLDTNYD-LLLDQSELRAIEL---------DKNEACIKPFFNSCDTYKDGSISTNEWCYCF 308 (434)
T ss_pred hhhhhccccccc-cccCHHHhhhhhc---------cCchhHHHHHHhhhcccccCccccchhhhhh
Confidence 346889999999 9999999886542 4456678999999999999999999999666
No 113
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=79.05 E-value=0.58 Score=36.03 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=35.5
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCC-------CCcceeHHHHH
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVD-------GNGVVNYEEFK 387 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d-------~~G~i~~~eF~ 387 (493)
.++.++|+.+ .++. ++||.+||++.|. +++++-+++.+..- .-|.+||..|.
T Consensus 6 eqv~~aFr~l-A~~K-pyVT~~dLr~~l~------------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~ 64 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGK-PYVTEEDLRRSLT------------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFT 64 (69)
T ss_dssp HHHHHHHHHH-CTSS-SCEEHHHHHHHS-------------CCCHHHHHCCSEC--SSS----TTEEECHHHH
T ss_pred HHHHHHHHHH-HcCC-CcccHHHHHHHcC------------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHH
Confidence 4567889999 6666 8999999998862 22334555544322 23789999997
No 114
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=77.51 E-value=1.3 Score=36.14 Aligned_cols=32 Identities=3% Similarity=0.214 Sum_probs=28.1
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHHhhc
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNL 354 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~ 354 (493)
..+.++++.+|.|++ |.|+.+||..++..|..
T Consensus 53 ~~v~~i~~elD~n~d-G~Idf~EF~~l~~~l~~ 84 (93)
T cd05026 53 MLVDKIMNDLDSNKD-NEVDFNEFVVLVAALTV 84 (93)
T ss_pred HHHHHHHHHhCCCCC-CCCCHHHHHHHHHHHHH
Confidence 457888999999999 99999999999987754
No 115
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=76.29 E-value=2.7 Score=31.21 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=21.0
Q ss_pred HHHHHhhCCCCCcceeHHHHHHHH
Q 011119 367 DDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 367 ~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
++++..+|.|++|.|+.+|+..++
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l 25 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFL 25 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHH
Confidence 467888999999999999999665
No 116
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.58 E-value=3.5 Score=43.21 Aligned_cols=62 Identities=23% Similarity=0.332 Sum_probs=51.9
Q ss_pred cccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 321 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
..-+...|+-+..|-. |+|+-+--+..+.+- .+.-+|+..+|+-.|.|.||-+++.||+..|
T Consensus 230 ReYYvnQFrtvQpDp~-gfisGsaAknFFtKS-------klpi~ELshIWeLsD~d~DGALtL~EFcAAf 291 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPH-GFISGSAAKNFFTKS-------KLPIEELSHIWELSDVDRDGALTLSEFCAAF 291 (737)
T ss_pred HHHHHhhhhcccCCcc-cccccHHHHhhhhhc-------cCchHHHHHHHhhcccCccccccHHHHHhhH
Confidence 3345566888889999 999999888888654 4677899999999999999999999999555
No 117
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=73.97 E-value=3.5 Score=32.88 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=23.4
Q ss_pred HHHHHHHHhhCC--CCCcceeHHHHHHHH
Q 011119 364 QETDDLWAQADV--DGNGVVNYEEFKVHA 390 (493)
Q Consensus 364 ~e~~~l~~~~D~--d~~G~i~~~eF~~~~ 390 (493)
+++.+++..+|. |++|.|+++||..++
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l 36 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELL 36 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHH
Confidence 457778999999 899999999999666
No 118
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=73.75 E-value=3.4 Score=43.14 Aligned_cols=58 Identities=17% Similarity=0.234 Sum_probs=36.4
Q ss_pred ccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhh----CCCCCcceeHHHHHHHH
Q 011119 324 ENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQA----DVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 324 ~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~----D~d~~G~i~~~eF~~~~ 390 (493)
+-.-|..+|+|.+ |.|+.++|+.--.. -+|.-=++.++.++ -.-.+|++||++|+..+
T Consensus 280 iy~kFweLD~Dhd-~lidk~~L~ry~d~--------tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~Fi 341 (493)
T KOG2562|consen 280 IYCKFWELDTDHD-GLIDKEDLKRYGDH--------TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFI 341 (493)
T ss_pred HHHHHhhhccccc-cccCHHHHHHHhcc--------chhhHHHHHHHhhccccceeeecCcccHHHHHHHH
Confidence 3344788899998 89999888764432 24455566666632 23356777777776433
No 119
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=72.81 E-value=2.1 Score=34.71 Aligned_cols=32 Identities=3% Similarity=0.100 Sum_probs=27.6
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHHhhc
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNL 354 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~ 354 (493)
..+.++++.+|.|++ |.|+.+||..++..+..
T Consensus 52 ~~~~~ll~~~D~d~D-G~I~f~EF~~l~~~l~~ 83 (89)
T cd05023 52 GVLDRMMKKLDLNSD-GQLDFQEFLNLIGGLAV 83 (89)
T ss_pred HHHHHHHHHcCCCCC-CcCcHHHHHHHHHHHHH
Confidence 456778999999999 99999999999887754
No 120
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=72.62 E-value=3.5 Score=33.55 Aligned_cols=33 Identities=6% Similarity=0.137 Sum_probs=28.4
Q ss_pred cccccccccccccCCCCcceeHHHHHHHHHHhhc
Q 011119 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNL 354 (493)
Q Consensus 321 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~ 354 (493)
...+.++|+.+|.|+| |.|+..||...+..+..
T Consensus 47 ~~~vd~im~~LD~n~D-g~vdF~EF~~Lv~~l~~ 79 (91)
T cd05024 47 PMAVDKIMKDLDDCRD-GKVGFQSFFSLIAGLLI 79 (91)
T ss_pred HHHHHHHHHHhCCCCC-CcCcHHHHHHHHHHHHH
Confidence 3467889999999999 99999999998877664
No 121
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=72.43 E-value=4.8 Score=32.51 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=23.7
Q ss_pred HHHHHHHHhhC-CCCCc-ceeHHHHHHHH
Q 011119 364 QETDDLWAQAD-VDGNG-VVNYEEFKVHA 390 (493)
Q Consensus 364 ~e~~~l~~~~D-~d~~G-~i~~~eF~~~~ 390 (493)
+++.+.+..+| .|++| .|+.+||..++
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l 37 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLL 37 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHH
Confidence 56888999997 99999 59999999766
No 122
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=72.04 E-value=1.5 Score=35.68 Aligned_cols=32 Identities=6% Similarity=0.238 Sum_probs=28.4
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHHhhc
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNL 354 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~ 354 (493)
..+..+|+.+|.+++ |.|+.+||..++..+++
T Consensus 51 ~ei~~~~~~~D~~~d-g~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 51 MAVDKIMKDLDQNRD-GKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHhCCCCC-CcCcHHHHHHHHHHHHH
Confidence 457778999999999 99999999999988876
No 123
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=71.11 E-value=3.7 Score=34.79 Aligned_cols=28 Identities=32% Similarity=0.624 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHhhCCCCCcceeHHHHH
Q 011119 360 GLSFQETDDLWAQADVDGNGVVNYEEFK 387 (493)
Q Consensus 360 ~~~~~e~~~l~~~~D~d~~G~i~~~eF~ 387 (493)
-||+++.+.+|.++-.|..|.|.|.||+
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL 30 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFL 30 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHH
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHH
Confidence 4899999999999999999999999998
No 124
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=70.90 E-value=4 Score=34.86 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHhhCCCCCcceeHHHHHHH
Q 011119 360 GLSFQETDDLWAQADVDGNGVVNYEEFKVH 389 (493)
Q Consensus 360 ~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~ 389 (493)
+....++..++..+|.|+||.|+.+|...+
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~ 73 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPI 73 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHH
Confidence 456678999999999999999999999844
No 125
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=69.57 E-value=12 Score=39.15 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHhhCCCCCcceeHHHHH
Q 011119 360 GLSFQETDDLWAQADVDGNGVVNYEEFK 387 (493)
Q Consensus 360 ~~~~~e~~~l~~~~D~d~~G~i~~~eF~ 387 (493)
.....++..+++.+|.||||.|+++||.
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~ 357 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWL 357 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 6778899999999999999999999996
No 126
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=69.28 E-value=5.1 Score=38.32 Aligned_cols=54 Identities=17% Similarity=0.366 Sum_probs=47.3
Q ss_pred cccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHH
Q 011119 329 AFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKV 388 (493)
Q Consensus 329 ~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~ 388 (493)
..+|.|.+ |.+|.+||...+.-.+. .++..++.+++...|.+++-+++.+|...
T Consensus 288 ElIDsNhD-GivTaeELe~y~dP~n~-----~~alne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 288 ELIDSNHD-GIVTAEELEDYVDPQNF-----RLALNEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HHhhcCCc-cceeHHHHHhhcCchhh-----hhhHHHHHHHHhhhccCCCcccCHHHHHH
Confidence 46799999 99999999998766666 67788999999999999999999999973
No 127
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=68.92 E-value=2.9 Score=33.70 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=28.0
Q ss_pred cccccccccccccCCCCcceeHHHHHHHHHHhhc
Q 011119 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNL 354 (493)
Q Consensus 321 ~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~ 354 (493)
...+..+|..+|.|++ |.|+++||..++..+..
T Consensus 50 ~~~v~~i~~~~D~d~d-G~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 50 QKAIDKIFEDLDTNQD-GQLSFEEFLVLVIKVGV 82 (88)
T ss_pred HHHHHHHHHHcCCCCC-CcCcHHHHHHHHHHHHH
Confidence 3457789999999999 99999999999887653
No 128
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=67.84 E-value=3 Score=33.67 Aligned_cols=32 Identities=6% Similarity=0.137 Sum_probs=27.5
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHHhhc
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNL 354 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~ 354 (493)
.++.++|+.+|.|++ |.|+++||...+..+..
T Consensus 51 ~ev~~m~~~~D~d~d-G~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 51 AEIAKLMEDLDRNKD-QEVNFQEYVTFLGALAL 82 (88)
T ss_pred HHHHHHHHHhcCCCC-CCCcHHHHHHHHHHHHH
Confidence 467778999999999 99999999988877654
No 129
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=65.28 E-value=7.1 Score=28.11 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=24.1
Q ss_pred cccccccccccCCCCcceeHHHHHHHHHHh
Q 011119 323 AENDAFAFFKADNNGDVITHSAFCEALRQV 352 (493)
Q Consensus 323 ~~~~~F~~~D~d~~~G~I~~~el~~~l~~l 352 (493)
-...+|+..|++++ |.+.-+||...++.|
T Consensus 22 yA~~LFq~~D~s~~-g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 22 YARQLFQECDKSQS-GRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHH-SSSS-SEBEHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCC-CCccHHHHHHHHHHh
Confidence 35568999999999 999999999988765
No 130
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=65.06 E-value=11 Score=42.87 Aligned_cols=63 Identities=11% Similarity=-0.071 Sum_probs=51.8
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCH-----HHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSF-----QETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~-----~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
.+++..|.-+|+... |.++++++..+|..+|. ..-+ +|+..++...|.++.|.++|.+|...|
T Consensus 747 ~ElrAle~~~~~~d~-~aa~~e~~~~~Lmslg~-----~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl 814 (890)
T KOG0035|consen 747 DELRALENEQDKIDG-GAASPEELLRCLMSLGY-----NTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDL 814 (890)
T ss_pred HHHHHHHhHHHHhhc-ccCCHHHHHHHHHhcCc-----ccchhHHHHHHHHHHHhccCcccccceeHHHHHhHh
Confidence 357788999999888 99999999999999997 5443 446668888899999999999998444
No 131
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=62.23 E-value=9.2 Score=35.66 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=24.0
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHHHH
Q 011119 365 ETDDLWAQADVDGNGVVNYEEFKVHAYF 392 (493)
Q Consensus 365 e~~~l~~~~D~d~~G~i~~~eF~~~~~~ 392 (493)
..+.|+++.|.|.||.||+.|.+.||..
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEK 127 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEK 127 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHH
Confidence 3567899999999999999999977743
No 132
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=58.84 E-value=10 Score=42.16 Aligned_cols=67 Identities=21% Similarity=0.247 Sum_probs=57.8
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHh
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHAYFLS 394 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~~~~~ 394 (493)
.-+..+|+..|++++ |.++..+...+++.++. .+...-+..++++.|..++|++..++|...-..+.
T Consensus 136 ~wi~~~~~~ad~~~~-~~~~~~~~~~~~~~~n~-----~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~ 202 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKN-GHMSFDEVLDLLKQLNV-----QLSESKARRLFKESDNSQTGKLEEEEFVKFRKELT 202 (746)
T ss_pred HHHHHHHHHHccccc-cccchhhHHHHHHHHHH-----hhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhc
Confidence 345678899999999 99999999999999998 88999999999999999999999999985554333
No 133
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.21 E-value=17 Score=40.51 Aligned_cols=55 Identities=24% Similarity=0.382 Sum_probs=43.6
Q ss_pred cccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 327 AFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 327 ~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
.|..+. -+. |+||-+.-+.++-+-|+ ...-+-++|.-.|.|+||++|..||...|
T Consensus 21 qF~~Lk-p~~-gfitg~qArnfflqS~L-------P~~VLaqIWALsDldkDGrmdi~EfSIAm 75 (1118)
T KOG1029|consen 21 QFGQLK-PGQ-GFITGDQARNFFLQSGL-------PTPVLAQIWALSDLDKDGRMDIREFSIAM 75 (1118)
T ss_pred HHhccC-CCC-CccchHhhhhhHHhcCC-------ChHHHHHHHHhhhcCccccchHHHHHHHH
Confidence 355553 344 99999999999877665 44457889999999999999999998555
No 134
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=56.42 E-value=25 Score=31.01 Aligned_cols=47 Identities=19% Similarity=0.322 Sum_probs=28.8
Q ss_pred cceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCC-------CcceeHHHHHHHHH
Q 011119 338 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDG-------NGVVNYEEFKVHAY 391 (493)
Q Consensus 338 G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~-------~G~i~~~eF~~~~~ 391 (493)
+.||++||.+.=+-.- .+...++++++++..|| .+.|||+.|+..|.
T Consensus 6 ~~lsp~eF~qLq~y~e-------ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~ 59 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE-------YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMK 59 (138)
T ss_dssp S-S-HHHHHHHHHHHH-------H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHH
T ss_pred eccCHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHH
Confidence 6899999987543332 35667999999986554 46899999996664
No 135
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.48 E-value=3.8 Score=47.04 Aligned_cols=61 Identities=21% Similarity=0.351 Sum_probs=52.9
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
..+.++|...|++.+ |.|+..+....+..- +++...+...|..+|.+++|.+++.||...|
T Consensus 283 ~~~~~if~q~d~~~d-G~I~s~~~~~~f~~~-------gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~ 343 (847)
T KOG0998|consen 283 QKYSKIFSQVDKDND-GSISSNEARNIFLPF-------GLSKPRLAHVWLLADTQNTGTLSKDEFALAM 343 (847)
T ss_pred HHHHHHHHhccccCC-CcccccccccccccC-------CCChhhhhhhhhhcchhccCcccccccchhh
Confidence 345558999999999 999999999988763 5788899999999999999999999998555
No 136
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=47.52 E-value=17 Score=35.26 Aligned_cols=24 Identities=33% Similarity=0.689 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhCCCcEEEEeeec
Q 011119 80 NRNQTILDWLICERSSVICLQEFW 103 (493)
Q Consensus 80 ~R~~~I~~~I~~~~pDIIcLQEV~ 103 (493)
.|...|++.-.--...||||||.|
T Consensus 100 ~r~kaiieaaa~agvniiclqeaw 123 (387)
T KOG0808|consen 100 DRLKAIIEAAAVAGVNIICLQEAW 123 (387)
T ss_pred HHHHHHHHHHHhcCccEEEeehhh
Confidence 366777777777789999999998
No 137
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=43.84 E-value=14 Score=30.95 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=25.2
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHHh
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQV 352 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~l 352 (493)
..+..++.+.|.|++ |+++.+||.-+|.-+
T Consensus 43 ~~L~~IW~LaD~~~d-G~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 43 DVLAQIWNLADIDND-GKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHHH-SSSS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCC-CcCCHHHHHHHHHHH
Confidence 457788999999999 999999999988654
No 138
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=41.64 E-value=47 Score=35.29 Aligned_cols=53 Identities=17% Similarity=0.133 Sum_probs=38.5
Q ss_pred ccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 330 FFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 330 ~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
+-|.-+| |.|+.+||+.. +.+-. -.+.--...++-+|+.++|.++|++|..+.
T Consensus 82 iaD~tKD-glisf~eF~af-e~~lC------~pDal~~~aFqlFDr~~~~~vs~~~~~~if 134 (694)
T KOG0751|consen 82 IADQTKD-GLISFQEFRAF-ESVLC------APDALFEVAFQLFDRLGNGEVSFEDVADIF 134 (694)
T ss_pred hhhhccc-ccccHHHHHHH-Hhhcc------CchHHHHHHHHHhcccCCCceehHHHHHHH
Confidence 4577788 99999999843 33211 124445567888999999999999998554
No 139
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=41.32 E-value=62 Score=28.74 Aligned_cols=58 Identities=10% Similarity=0.257 Sum_probs=43.7
Q ss_pred ccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHH--HHHhhCCCCCcceeHHHHHHHH
Q 011119 326 DAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDD--LWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 326 ~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~--l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
++-..|-.||. |.+|.++|-.++.-+.. +.+.+++. .++-.|-|+|+.|--++...++
T Consensus 75 ri~e~FSeDG~-GnlsfddFlDmfSV~sE------~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l 134 (189)
T KOG0038|consen 75 RICEVFSEDGR-GNLSFDDFLDMFSVFSE------MAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTL 134 (189)
T ss_pred HHHHHhccCCC-CcccHHHHHHHHHHHHh------hChHHhhhhheeEEeecCCCCcccHHHHHHHH
Confidence 34566778999 99999999999987764 45555554 4556799999999887776444
No 140
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.14 E-value=21 Score=36.47 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=50.7
Q ss_pred ccccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHH-HHHHHHhhCCCCCcceeHHHHH
Q 011119 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQE-TDDLWAQADVDGNGVVNYEEFK 387 (493)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e-~~~l~~~~D~d~~G~i~~~eF~ 387 (493)
...+++++|+..|..+. |+|+.+-++.+|..++. ..++.+ |-.|=+.+|..+-|.|-.++|.
T Consensus 307 ~s~q~rR~f~a~d~~d~-nfis~s~~~~vm~~~N~-----~vse~a~v~l~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDN-NFISCSGLQIVMTALNR-----LVSEPAYVMLMRQPLDPESLGIILLEDFL 369 (449)
T ss_pred CCHHHHhhhhccCccCC-CeeecHHHHHHHHHhcc-----cccCHHHHHHhcCccChhhcceEEecccc
Confidence 34568899999999999 99999999999999996 566544 4444456888899999988887
No 141
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=37.17 E-value=54 Score=24.81 Aligned_cols=31 Identities=10% Similarity=0.036 Sum_probs=28.4
Q ss_pred cceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhh
Q 011119 338 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQA 373 (493)
Q Consensus 338 G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~ 373 (493)
--|+.+-++..+.+.|. ++|+.++++++..+
T Consensus 30 Ppine~mir~M~~QMG~-----kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 30 PPINEKMIRAMMMQMGR-----KPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCHHHHHHHHHHhCC-----CccHHHHHHHHHHH
Confidence 38999999999999999 99999999998765
No 142
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=34.32 E-value=56 Score=32.88 Aligned_cols=59 Identities=8% Similarity=0.055 Sum_probs=49.1
Q ss_pred cccccccccccCCCCcceeHHHHHHHHHHh-hcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHH
Q 011119 323 AENDAFAFFKADNNGDVITHSAFCEALRQV-NLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFK 387 (493)
Q Consensus 323 ~~~~~F~~~D~d~~~G~I~~~el~~~l~~l-g~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~ 387 (493)
.+...|.+||.+++ |.+++.|--..|.-+ |- +.+++-|+--++.++.+.||.+.=.+|.
T Consensus 260 ~l~~~f~LFde~~t-g~~D~re~v~~lavlc~p-----~~t~~iiq~afk~f~v~eDg~~ge~~ls 319 (412)
T KOG4666|consen 260 KLAPTFMLFDEGTT-GNGDYRETVKTLAVLCGP-----PVTPVIIQYAFKRFSVAEDGISGEHILS 319 (412)
T ss_pred hhhhhhheecCCCC-CcccHHHHhhhheeeeCC-----CCcHHHHHHHHHhcccccccccchHHHH
Confidence 46778999999999 999988776666543 33 6788889999999999999999998886
No 143
>PRK00523 hypothetical protein; Provisional
Probab=33.42 E-value=66 Score=24.92 Aligned_cols=32 Identities=13% Similarity=0.024 Sum_probs=29.1
Q ss_pred cceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhC
Q 011119 338 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQAD 374 (493)
Q Consensus 338 G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D 374 (493)
=-|+.+-++..+.+.|. ++|+.++++++..+.
T Consensus 38 Ppine~mir~M~~QMGq-----KPSekki~Q~m~~mk 69 (72)
T PRK00523 38 PPITENMIRAMYMQMGR-----KPSESQIKQVMRSVK 69 (72)
T ss_pred cCCCHHHHHHHHHHhCC-----CccHHHHHHHHHHHH
Confidence 38999999999999999 999999999998763
No 144
>PF14658 EF-hand_9: EF-hand domain
Probab=33.22 E-value=29 Score=26.48 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=26.1
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHH
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQ 351 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~ 351 (493)
.++++.-+.+|.++.+|.|+.++|..+|+.
T Consensus 35 ~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 35 SELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 467788889999987799999999999985
No 145
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=32.70 E-value=21 Score=38.72 Aligned_cols=57 Identities=14% Similarity=0.199 Sum_probs=39.6
Q ss_pred ccccccccccCCCCcceeHHHHHHHHHHhhcCCCCC--CCCHHHHHHHHHhhCCCCCcceeHHHHHHHH
Q 011119 324 ENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPY--GLSFQETDDLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 324 ~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~--~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
+...|..+|.|+| |.++..||+.++...+. .|- .+.+ +.- -.+..|.++|+.|...+
T Consensus 317 l~~~f~~~D~d~D-g~L~p~El~~LF~~~P~--~pW~~~~~~-~~t------~~~~~G~ltl~g~l~~W 375 (625)
T KOG1707|consen 317 LVDVFEKFDRDND-GALSPEELKDLFSTAPG--SPWTSSPYK-DST------VKNERGWLTLNGFLSQW 375 (625)
T ss_pred HHHHHHhccCCCC-CCcCHHHHHHHhhhCCC--CCCCCCccc-ccc------eecccceeehhhHHHHH
Confidence 5668999999999 99999999999988653 110 1111 111 12267999999998444
No 146
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=30.73 E-value=38 Score=37.10 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=47.9
Q ss_pred ccccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHH
Q 011119 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEF 386 (493)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF 386 (493)
.-....|+.+|.+++ |.|+..+|-..|..+-. +--.+.+.-+++-+|.+++ ..+-+|-
T Consensus 555 ~~~~rlF~l~D~s~~-g~Ltf~~lv~gL~~l~~-----~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMT-GLLTFKDLVSGLSILKA-----GDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHhcccCCc-ceeEHHHHHHHHHHHHh-----hhHHHHHHHHHhhccCCcc-ccccccc
Confidence 345678999999999 99999999999988764 4445667888999999998 8887776
No 147
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=30.47 E-value=59 Score=24.62 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=31.9
Q ss_pred cceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCC
Q 011119 338 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDG 377 (493)
Q Consensus 338 G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~ 377 (493)
+-++..++.+.|..-|. .++++.+...+..+|.||
T Consensus 12 ~P~g~~~l~~~L~~~g~-----~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 12 KPLGRKQLAEELKLRGE-----ELSEEAVRRRLRAMERDG 46 (66)
T ss_pred CCCCHHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHCC
Confidence 67999999999988888 999999999999999877
No 148
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=29.19 E-value=64 Score=18.71 Aligned_cols=14 Identities=43% Similarity=0.729 Sum_probs=11.7
Q ss_pred CCCCCcceeHHHHH
Q 011119 374 DVDGNGVVNYEEFK 387 (493)
Q Consensus 374 D~d~~G~i~~~eF~ 387 (493)
|.|+||+|+--+|.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 67999999988887
No 149
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.30 E-value=1e+02 Score=23.74 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=30.3
Q ss_pred cCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhC
Q 011119 333 ADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQAD 374 (493)
Q Consensus 333 ~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D 374 (493)
+|+. .|+.+-++..+.+.|. ++|+..+++++..+-
T Consensus 34 k~NP--pine~~iR~M~~qmGq-----KpSe~kI~Qvm~~i~ 68 (71)
T COG3763 34 KDNP--PINEEMIRMMMAQMGQ-----KPSEKKINQVMRSII 68 (71)
T ss_pred hhCC--CCCHHHHHHHHHHhCC-----CchHHHHHHHHHHHH
Confidence 4454 8999999999999999 999999999988753
No 150
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=27.14 E-value=1.8e+02 Score=23.49 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=35.9
Q ss_pred cceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHH
Q 011119 338 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKV 388 (493)
Q Consensus 338 G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~ 388 (493)
|.++..|...+-.-+.. -.++++++.+.++..+..-.....++.+|..
T Consensus 14 G~v~~~E~~~i~~~l~~---~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 61 (104)
T cd07313 14 GEYDEEERAAIDRLLAE---RFGLDAEEAAELLAEAEALEEEAPDLYEFTS 61 (104)
T ss_pred CCCCHHHHHHHHHHHHH---HhCcCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 89999997766544321 0157888999999988877777889999973
No 151
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=26.72 E-value=1e+02 Score=21.45 Aligned_cols=37 Identities=19% Similarity=0.055 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHH
Q 011119 342 HSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFK 387 (493)
Q Consensus 342 ~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~ 387 (493)
.+|...+|..||+ ++.|++..+..+.. ...++.+|.+
T Consensus 3 ~~d~~~AL~~LGy-------~~~e~~~av~~~~~--~~~~~~e~~i 39 (47)
T PF07499_consen 3 LEDALEALISLGY-------SKAEAQKAVSKLLE--KPGMDVEELI 39 (47)
T ss_dssp HHHHHHHHHHTTS--------HHHHHHHHHHHHH--STTS-HHHHH
T ss_pred HHHHHHHHHHcCC-------CHHHHHHHHHHhhc--CCCCCHHHHH
Confidence 3677888888774 89999999999875 3446667665
No 152
>PF14164 YqzH: YqzH-like protein
Probab=26.62 E-value=1.1e+02 Score=23.21 Aligned_cols=30 Identities=23% Similarity=0.134 Sum_probs=21.7
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHhh
Q 011119 344 AFCEALRQVNLAGLPYGLSFQETDDLWAQA 373 (493)
Q Consensus 344 el~~~l~~lg~~g~~~~~~~~e~~~l~~~~ 373 (493)
-++.+|++.|..+.+.|+++.|.+.|.+.+
T Consensus 9 mi~~~l~QYg~d~~~~pls~~E~~~L~~~i 38 (64)
T PF14164_consen 9 MIINCLRQYGYDVECMPLSDEEWEELCKHI 38 (64)
T ss_pred HHHHHHHHhCCcccCCCCCHHHHHHHHHHH
Confidence 466777887776677788888877776653
No 153
>PRK01844 hypothetical protein; Provisional
Probab=25.97 E-value=1e+02 Score=23.88 Aligned_cols=30 Identities=10% Similarity=0.077 Sum_probs=28.3
Q ss_pred ceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhh
Q 011119 339 VITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQA 373 (493)
Q Consensus 339 ~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~ 373 (493)
-|+.+-++..+.+.|. ++|+.++++++...
T Consensus 38 pine~mir~Mm~QMGq-----kPSekki~Q~m~~m 67 (72)
T PRK01844 38 PINEQMLKMMMMQMGQ-----KPSQKKINQMMSAM 67 (72)
T ss_pred CCCHHHHHHHHHHhCC-----CccHHHHHHHHHHH
Confidence 8999999999999999 99999999999876
No 154
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=24.99 E-value=1e+02 Score=22.03 Aligned_cols=30 Identities=33% Similarity=0.346 Sum_probs=25.1
Q ss_pred cceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCC
Q 011119 338 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDG 377 (493)
Q Consensus 338 G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~ 377 (493)
|.|+..++++++ +++-.-+-.++..+|..|
T Consensus 9 ~~itv~~~rd~l----------g~sRK~ai~lLE~lD~~g 38 (50)
T PF09107_consen 9 GEITVAEFRDLL----------GLSRKYAIPLLEYLDREG 38 (50)
T ss_dssp SSBEHHHHHHHH----------TS-HHHHHHHHHHHHHTT
T ss_pred CcCcHHHHHHHH----------CccHHHHHHHHHHHhccC
Confidence 899999999999 678888888888888665
No 155
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=24.93 E-value=66 Score=25.41 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=21.8
Q ss_pred cceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCC
Q 011119 338 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDG 377 (493)
Q Consensus 338 G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~ 377 (493)
|+||++|+..+|... .++.++++.++..+...|
T Consensus 20 G~lT~~eI~~~L~~~-------~~~~e~id~i~~~L~~~g 52 (82)
T PF03979_consen 20 GYLTYDEINDALPED-------DLDPEQIDEIYDTLEDEG 52 (82)
T ss_dssp SS-BHHHHHHH-S-S----------HHHHHHHHHHHHTT-
T ss_pred CcCCHHHHHHHcCcc-------CCCHHHHHHHHHHHHHCC
Confidence 899999999999532 478889999988876554
No 156
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=24.37 E-value=1.1e+02 Score=28.32 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=24.7
Q ss_pred ccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCC
Q 011119 332 KADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADV 375 (493)
Q Consensus 332 D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~ 375 (493)
..|.+ |++..+||-+.++.-+. .+|.+++++++..-|+
T Consensus 26 ~~d~~-G~v~v~dLL~~~~~~~~-----~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPD-GWVSVDDLLRALRFKGL-----WVTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT---EEHHHHHHHHHHT-T-----T--HHHHHHHHHH-SS
T ss_pred ccCCC-CCEeHHHHHHHHHHcCC-----CCCHHHHHHHHhhCCC
Confidence 45677 99999999998888776 7899999999887443
No 157
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=23.99 E-value=82 Score=24.50 Aligned_cols=43 Identities=9% Similarity=0.154 Sum_probs=27.1
Q ss_pred cceeHHHHHHHHHHhh----cCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHH
Q 011119 338 DVITHSAFCEALRQVN----LAGLPYGLSFQETDDLWAQADVDGNGVVNYEEF 386 (493)
Q Consensus 338 G~I~~~el~~~l~~lg----~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF 386 (493)
|+++.+||..++.+.- ...+-.+.|..++++|+. +|+|+-++|
T Consensus 29 Gkv~~ee~n~~~e~~p~~~~~lAk~~G~t~~~l~~~~~------~Gkit~~~~ 75 (75)
T TIGR02675 29 GKLRGEEINSLLEALPGALQALAKAMGVTRGELRKMLS------DGKLTADVI 75 (75)
T ss_pred CcccHHHHHHHHHHhHHHHHHHHHHhCCCHHHHHHHHH------CCCCccccC
Confidence 8999999988876521 000011577777877764 467776654
No 158
>PRK11756 exonuclease III; Provisional
Probab=22.72 E-value=50 Score=32.13 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=18.8
Q ss_pred ecccccCchhhhcCCCCCCCCCCCCCCeeEEee
Q 011119 453 VKDAFLFPSEVEKGKWPENYSLSDHAPLSVVFS 485 (493)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (493)
|+++.+.+ +...|.|| |||+|+.++|.
T Consensus 241 v~~~~i~~-~~~~~~~~-----SDH~PV~~~~~ 267 (268)
T PRK11756 241 CVETGIDY-DIRGMEKP-----SDHAPIWATFK 267 (268)
T ss_pred heEeEEeH-HHhCCCCC-----CCcccEEEEEe
Confidence 55666543 34666665 99999999874
No 159
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.30 E-value=89 Score=27.36 Aligned_cols=60 Identities=23% Similarity=0.158 Sum_probs=31.0
Q ss_pred CCceEEEEEeeecCCCCCCchHH-HHHHHHHHHHHHHHHHhhccC-C------CCCEEEEecCCCCCCch
Q 011119 182 GQQEILIVNTHLLFPHDSSLSVV-RLHQVYKILQYLELYQTENKL-N------HIPIILCGDWNGSKRGH 243 (493)
Q Consensus 182 ~g~~v~V~ntHL~~~~~~~~~~~-R~~Q~~~l~~~l~~~~~~~~~-~------~~PvIL~GDFN~~p~s~ 243 (493)
.+..+..+++|+..+- ..... |..-.+.+.+...-....... + ..-||..||+|.-..+.
T Consensus 57 ~~~~~~~v~~hl~~~~--~~~~~~r~~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~~~ 124 (145)
T KOG0565|consen 57 SQTSFCFVISHLTSGV--HKVYERRNEDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLSGP 124 (145)
T ss_pred cCceEEEEEecccccc--hhhHHHhhccHHHHHhhccccccCcccccccccccccEEEEecceeeeecCc
Confidence 5778999999996532 11122 333333444332211110000 0 13478999999765543
No 160
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.11 E-value=1.7e+02 Score=25.97 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=50.3
Q ss_pred cccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHHHHHHHHhhHHHHHHHHHHH
Q 011119 327 AFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKVHAYFLSKLLIISFVCQWC 406 (493)
Q Consensus 327 ~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~~~~~~~~~~~~~~~~~~~~ 406 (493)
+|.+...| |.++..|......-+. +.++++.+++.+++.....-+.-.|||-.|---+ .+.++
T Consensus 35 lf~Vm~AD---G~v~~~E~~a~r~il~---~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l--~r~Ld--------- 97 (148)
T COG4103 35 LFHVMEAD---GTVSESEREAFRAILK---ENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVL--KRHLD--------- 97 (148)
T ss_pred HHHHHhcc---cCcCHHHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHhcC---------
Confidence 46666554 6788877554332221 1227899999999998887788889999886222 11111
Q ss_pred HHHHHHHHHHHhhhhcccch
Q 011119 407 LESMLKLLALQQRMWNLSCS 426 (493)
Q Consensus 407 ~e~~~~~~~~~~~~~~~~~~ 426 (493)
..+-++|.+-||.-.|.
T Consensus 98 ---~e~R~eli~~mweIa~A 114 (148)
T COG4103 98 ---EEQRLELIGLMWEIAYA 114 (148)
T ss_pred ---HHHHHHHHHHHHHHHHc
Confidence 12223455789987775
No 161
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=21.98 E-value=49 Score=32.47 Aligned_cols=11 Identities=55% Similarity=0.769 Sum_probs=10.1
Q ss_pred CCCCCeeEEee
Q 011119 475 SDHAPLSVVFS 485 (493)
Q Consensus 475 ~~~~~~~~~~~ 485 (493)
|||||++|.|.
T Consensus 250 SDHaPV~~e~~ 260 (261)
T COG0708 250 SDHAPVWVELD 260 (261)
T ss_pred CCcCcEEEEec
Confidence 99999999984
No 162
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=21.49 E-value=85 Score=38.06 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=26.2
Q ss_pred CCCHHHHH---HHHHhhCCCCCcceeHHHHHHHH
Q 011119 360 GLSFQETD---DLWAQADVDGNGVVNYEEFKVHA 390 (493)
Q Consensus 360 ~~~~~e~~---~l~~~~D~d~~G~i~~~eF~~~~ 390 (493)
++|++.+. .|++.+|++.+|.+||++|.-|+
T Consensus 2246 GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCL 2279 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCL 2279 (2399)
T ss_pred CCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHH
Confidence 57776654 58999999999999999999666
No 163
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=21.21 E-value=2.2e+02 Score=24.13 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=38.6
Q ss_pred ccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHH
Q 011119 328 FAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFK 387 (493)
Q Consensus 328 F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~ 387 (493)
+-+.-.-|+ ..||.++++.+|+..|. .+.+..+..+++.+. ..|.+|.+
T Consensus 9 YlL~~lgG~-~~pTaddI~kIL~AaGv-----eVd~~~~~l~~~~L~-----GKdI~ELI 57 (112)
T PTZ00373 9 YLMCVLGGN-ENPTKKEVKNVLSAVNA-----DVEDDVLDNFFKSLE-----GKTPHELI 57 (112)
T ss_pred HHHHHHcCC-CCCCHHHHHHHHHHcCC-----CccHHHHHHHHHHHc-----CCCHHHHH
Confidence 333444555 57999999999999999 899999999998885 36777777
No 164
>PF11165 DUF2949: Protein of unknown function (DUF2949); InterPro: IPR021336 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=21.07 E-value=3.6e+02 Score=20.05 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHhhCCCCC---------cceeHHHHHHHHHHHh
Q 011119 361 LSFQETDDLWAQADVDGN---------GVVNYEEFKVHAYFLS 394 (493)
Q Consensus 361 ~~~~e~~~l~~~~D~d~~---------G~i~~~eF~~~~~~~~ 394 (493)
++.+.+.--++....+.. |-|+.+++..+.+|+.
T Consensus 15 ls~~~i~lalr~~~~~~~pLPmiLWqyGLItL~QL~~i~DWl~ 57 (58)
T PF11165_consen 15 LSEASIALALRQQEQDQGPLPMILWQYGLITLEQLDQIFDWLE 57 (58)
T ss_pred CCHHHHHHHHHhHhccCCCcchHHHHhccccHHHHHHHHHHHh
Confidence 455566655555555444 8888888887777764
No 165
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=20.97 E-value=67 Score=22.25 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=18.7
Q ss_pred cccccccc-ccCCCCcceeHHHHHHHHHH
Q 011119 324 ENDAFAFF-KADNNGDVITHSAFCEALRQ 351 (493)
Q Consensus 324 ~~~~F~~~-D~d~~~G~I~~~el~~~l~~ 351 (493)
+..+|..+ .++|+...++..||+..|..
T Consensus 8 iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 8 IIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 34455444 34555478999999998865
No 166
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=20.71 E-value=1.1e+02 Score=25.74 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=41.4
Q ss_pred ccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHH
Q 011119 326 DAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFK 387 (493)
Q Consensus 326 ~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~ 387 (493)
.+|-+++.-++ -.-+..+++.+|..+|. ....+.++.+|.++. |+ +.+|.+
T Consensus 5 aAYLL~~lgGn-~~psa~DikkIl~sVG~-----E~d~e~i~~visel~----GK-~i~ElI 55 (112)
T KOG3449|consen 5 AAYLLAVLGGN-ASPSASDIKKILESVGA-----EIDDERINLVLSELK----GK-DIEELI 55 (112)
T ss_pred HHHHHHHhcCC-CCCCHHHHHHHHHHhCc-----ccCHHHHHHHHHHhc----CC-CHHHHH
Confidence 34556666676 68899999999999999 999999999999974 44 777776
No 167
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=20.53 E-value=1.6e+02 Score=27.12 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=32.9
Q ss_pred ccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHH
Q 011119 332 KADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYE 384 (493)
Q Consensus 332 D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~ 384 (493)
..|.+ |++..++|-..++.-+. .+|.+++++++..-| .+...++
T Consensus 27 ~ld~~-G~v~v~~Ll~~~~~~~~-----~~t~~~l~~vV~~d~---K~Rf~l~ 70 (179)
T PRK00819 27 TLDEE-GWVDIDALIEALAKAYK-----WVTRELLEAVVESDD---KGRFEIS 70 (179)
T ss_pred ccCCC-CCEEHHHHHHHHHHccC-----CCCHHHHHHHHHcCC---CcceEec
Confidence 34677 99999999999876555 789999999887644 4454443
No 168
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.16 E-value=1.1e+02 Score=31.68 Aligned_cols=55 Identities=20% Similarity=0.339 Sum_probs=38.8
Q ss_pred ccccccccccCCCCcceeHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhCCCCCcceeHHHHH
Q 011119 324 ENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFK 387 (493)
Q Consensus 324 ~~~~F~~~D~d~~~G~I~~~el~~~l~~lg~~g~~~~~~~~e~~~l~~~~D~d~~G~i~~~eF~ 387 (493)
..++|-.+-.- + |+|+-..-+.-|- +. .+...-+-.+|+-+|.|.||.+|=+||.
T Consensus 446 yde~fy~l~p~-~-gk~sg~~ak~~mv--~s-----klpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 446 YDEIFYTLSPV-N-GKLSGRNAKKEMV--KS-----KLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred hHhhhhccccc-C-ceeccchhHHHHH--hc-----cCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 33445444332 3 7888766655442 23 5666678899999999999999999997
Done!