BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011120
         (493 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q1LW89|CASD1_DANRE CAS1 domain-containing protein 1 OS=Danio rerio GN=casd1 PE=2 SV=2
          Length = 781

 Score = 35.0 bits (79), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 178 WQPKACNLPRFDARNMLQKLRNRRLVFVGDSIGRNQWESLLCML 221
           WQP  C L ++ +      LR +R+ FVGDS  R  + S + M+
Sbjct: 64  WQPYGCMLHKYKSTEAKFCLREKRIAFVGDSRIRQLFYSFIKMM 107


>sp|Q9RGS4|YIDC_STACT Membrane protein insertase YidC OS=Staphylococcus carnosus (strain
           TM300) GN=yidC PE=3 SV=2
          Length = 289

 Score = 32.7 bits (73), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 19  EKMRKNTSPVAQESDTMTHLDFWKKFKRLNPLEPSLGILGFILVAAIFIGCFFYLDYRT- 77
           EK+++  +   + +     ++ +KK+  +NP++  LG L  ++   I +G FF L Y + 
Sbjct: 100 EKVQRARTQEDKMAANQEMMEVYKKYD-MNPMQSMLGCLPMLIQMPIIMGLFFVLKYPSP 158

Query: 78  --VTRRLHYHDPSWLGLAVP 95
             +T   H+    W  LA P
Sbjct: 159 GGITEHSHF---LWFNLAKP 175


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.138    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 198,714,575
Number of Sequences: 539616
Number of extensions: 8763107
Number of successful extensions: 18806
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 18796
Number of HSP's gapped (non-prelim): 13
length of query: 493
length of database: 191,569,459
effective HSP length: 122
effective length of query: 371
effective length of database: 125,736,307
effective search space: 46648169897
effective search space used: 46648169897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)