Query 011123
Match_columns 493
No_of_seqs 253 out of 585
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:22:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011123.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011123hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2154 Predicted nucleolar pr 100.0 5.1E-74 1.1E-78 591.8 27.9 356 8-448 136-492 (505)
2 KOG2038 CAATT-binding transcri 100.0 1.5E-48 3.2E-53 419.8 21.1 253 161-437 468-764 (988)
3 PF03914 CBF: CBF/Mak21 family 100.0 3E-40 6.5E-45 307.5 13.2 162 218-393 1-164 (164)
4 COG5593 Nucleic-acid-binding p 100.0 1.9E-30 4E-35 271.8 16.7 254 160-448 362-622 (821)
5 COG5117 NOC3 Protein involved 99.8 3.2E-19 6.9E-24 185.4 19.4 205 164-398 406-654 (657)
6 KOG2153 Protein involved in th 99.7 5.4E-16 1.2E-20 167.2 16.9 213 165-429 460-685 (704)
7 KOG2153 Protein involved in th 97.8 5.7E-05 1.2E-09 83.1 8.5 146 224-397 544-700 (704)
8 KOG1058 Vesicle coat complex C 67.8 50 0.0011 38.5 11.3 99 218-319 333-434 (948)
9 KOG0212 Uncharacterized conser 42.8 5.8E+02 0.012 29.3 16.1 150 161-314 181-369 (675)
10 PF14500 MMS19_N: Dos2-interac 41.9 3.8E+02 0.0083 27.2 11.9 109 203-313 42-156 (262)
11 PF08167 RIX1: rRNA processing 35.2 1E+02 0.0022 28.8 6.1 35 279-315 114-148 (165)
12 PF10979 DUF2786: Protein of u 26.5 1.3E+02 0.0028 22.4 4.1 35 279-313 3-39 (43)
13 PF12717 Cnd1: non-SMC mitotic 26.3 5.4E+02 0.012 24.0 12.4 121 169-290 29-159 (178)
14 PF06465 DUF1087: Domain of Un 24.7 69 0.0015 26.2 2.6 37 372-410 24-60 (66)
15 PF01603 B56: Protein phosphat 22.5 2.2E+02 0.0047 30.8 6.6 63 257-319 106-171 (409)
16 cd00183 TFIIS_I N-terminal dom 22.3 75 0.0016 26.0 2.4 23 376-398 48-70 (76)
17 PF08613 Cyclin: Cyclin; Inte 21.2 1.5E+02 0.0031 27.3 4.4 36 274-310 49-84 (149)
18 PF09068 EF-hand_2: EF hand; 21.1 1.7E+02 0.0037 26.5 4.7 65 165-229 46-125 (127)
19 PF01153 Glypican: Glypican; 20.6 8.4E+02 0.018 27.7 11.0 78 160-253 93-175 (557)
No 1
>KOG2154 consensus Predicted nucleolar protein involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.1e-74 Score=591.81 Aligned_cols=356 Identities=36% Similarity=0.597 Sum_probs=309.7
Q ss_pred CCCccChHHHHHHHHHHHcCCCChhhHHHHHHhhccccccchhhHHHHHHHHHHhhhcCCCCCCCCCCCCCCccccchhh
Q 011123 8 NGGKFHSAIYHKLLHSIVHSTESVGSVTDFLASKYFKYIDVRYFTYISMEKLARSLEGKGISDDKTGSADENSESHSRAS 87 (493)
Q Consensus 8 ~~~~f~~~~~~~l~~~l~~~~~~~~~~~~~~~~~y~~y~Dvryy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (493)
..|.||+.+|++++.+|+.+ +-.+..|.+. ..|+|.+|.+|......+.++..+.+. ++
T Consensus 136 ~~g~fp~~~f~~l~~~LisS----dv~it~f~e~-~~~t~k~f~~~~~~~~~~~s~~~q~~~-------------Dp--- 194 (505)
T KOG2154|consen 136 ENGGFPNSIFHRLLDALISS----DVDITIFLEN-VGYTDKYFKYFDITLTQVRSVVPQHPT-------------DP--- 194 (505)
T ss_pred cccCCcHHHHHHHHHHHhcc----cccHHHHHHh-ccchhHHHHHHHHHHHHHHHhccCCCC-------------CC---
Confidence 45779999999999999987 3456777664 789999999999887777766542221 11
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccccccccccCCCCCcccchhHhhhhhhhccccchhhhhccccchHHHHHHHHHHHHH
Q 011123 88 IELSLRKSYYILSKIPSMEDNNEKSEHEMWSGSGSSSEEGNLKEASKKSKTKVKMPKAEKSNNNALSAAIISKKMKSKFT 167 (493)
Q Consensus 88 ~~~~~~n~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~k~~~~ 167 (493)
+.+..|.+.+++.++++-... ....|..++ .++.+...+++++.|+
T Consensus 195 -~v~~~N~~~~ls~v~~p~~~~---S~~~~~~~~------------------------------~p~~~~~~~~~~k~f~ 240 (505)
T KOG2154|consen 195 -PVIANNELEILSLVSLPLSVS---STSSYVLEP------------------------------IPKQTENEKQIRKSFQ 240 (505)
T ss_pred -chhhcchHHHhhhccCCCCcc---cHhhhcccc------------------------------CccccccHHHHHHHHH
Confidence 467789999999999875221 112233221 1122223467899999
Q ss_pred HHHHHhccCCCChhhHHHHHHHhhhhhhccccChhhHhhHHHHhhh-cCCchHHHHHHHHHHHHHhcCCCcchHHHHHHH
Q 011123 168 KAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYD-IGGVVSVMALSSLFILMTQHGLEYPNFYEKLYA 246 (493)
Q Consensus 168 ~awL~~L~~~lp~~l~k~vL~~L~k~i~phl~np~lL~DFltd~~d-~gg~isllAL~~LF~Li~~~Nld~~rFY~~LY~ 246 (493)
.+|+++++.++|..+++++|.+++++|+||+..|..+||||||+|| .||++||+||+|||+||++||++||.||.+||+
T Consensus 241 ~~Wls~l~~~ls~~lykkil~vih~rvip~l~~P~kl~DFLtdsyd~~~g~vslLALngLF~Lm~khNleYP~FY~KLY~ 320 (505)
T KOG2154|consen 241 NMWLSSLNGELSLKLYKKILLVIHKRVIPHLISPTKLMDFLTDSYDDIGGVVSLLALNGLFILMTKHNLEYPDFYEKLYA 320 (505)
T ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHhccCCchhHHHHhHHHHHHHHcCCCCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred hhCcCcccchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCccccccccccCCCC
Q 011123 247 LLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNE 326 (493)
Q Consensus 247 LLdp~l~~s~~ra~Fl~LL~~~Lks~~lp~~rVAAFiKRLlrlaL~~pp~~~~~iL~lI~nLLkrhP~l~~Ll~~~~~~~ 326 (493)
||+|++||.+||+|||+|+|.||+|+|||+++||||+|||+|+||.+||.+++.+|+||+||++|||+|+.|+|++...+
T Consensus 321 Ll~Pslfh~KyRarff~L~D~FLSSTHLpa~LvAsFlKrLaRlaL~APpeA~~~vipfI~Nll~rHp~c~~lvhr~~~~~ 400 (505)
T KOG2154|consen 321 LLNPSLFHVKYRARFFRLADLFLSSTHLPAYLVASFLKRLARLALEAPPEAIVIVIPFICNLLRRHPNCQPLVHRSHALS 400 (505)
T ss_pred hcCchHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHhCCchhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986532
Q ss_pred CCCCCchhHHHHHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcchHHHHHHHhhccChHHHHHHHHhhhccccccccc
Q 011123 327 THNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAKTT 406 (493)
Q Consensus 327 ~~~~~~~~ege~~d~~~~~~~~~~~~~~d~Ydp~~rDP~~~nA~~SsLWEL~~L~~HyHPsVa~~A~~l~~~~~i~~~~~ 406 (493)
...||||+++.||.+++|++||||||.+||.||||+|+..|+.+.+++++ +
T Consensus 401 -------------------------~~~Dpfd~~EtDP~ks~ALeSSLWEL~~Lq~Hy~p~Va~~A~~~~q~~~k----~ 451 (505)
T KOG2154|consen 401 -------------------------LYDDPFDNDETDPKKSGALESSLWELELLQTHYHPEVAKAASFFNQSLYK----P 451 (505)
T ss_pred -------------------------CCCCCCCCCCCChhhhhhHHHHHHHHHHHHHhhcHHHHHHHHHHhccCcc----c
Confidence 24599999999999999999999999999999999999999999999886 5
Q ss_pred ccccCCCCCCcHHHHHHHHHhccCCCCCcccccCCCCcCCCC
Q 011123 407 EINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSD 448 (493)
Q Consensus 407 ~y~~~dfld~sy~~lld~e~~k~~k~~p~~~~~~~p~~lf~~ 448 (493)
+|+++|++|++|..++|+|++++.|..|-.+|+ -++++++.
T Consensus 452 ef~~ed~ld~~y~~l~d~el~~kgk~~p~lefe-~~t~~~g~ 492 (505)
T KOG2154|consen 452 EFGLEDGLDSKYSVLQDGELSRKGKRFPPLEFE-RRTGLGGR 492 (505)
T ss_pred cccCcchhhhhhHHhhcchhhcccCCCCCcccc-cccccCCc
Confidence 899999999999999999999999954444444 27899887
No 2
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=100.00 E-value=1.5e-48 Score=419.75 Aligned_cols=253 Identities=26% Similarity=0.377 Sum_probs=219.3
Q ss_pred HHHHHHHHHHHHhccCCCC-----hhhHHHHHHHhhhhhhccccChhhHhhHHHHhhhcCCchHHHHHHHHHHHHHhcCC
Q 011123 161 KMKSKFTKAWITFLRLPLP-----VDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGL 235 (493)
Q Consensus 161 ~~k~~~~~awL~~L~~~lp-----~~l~k~vL~~L~k~i~phl~np~lL~DFltd~~d~gg~isllAL~~LF~Li~~~Nl 235 (493)
+..+++.+|.|||+|||+| .+.+......|++ +.|.+| |+| |||||++|||++....+
T Consensus 468 e~nsrllSAlLTGvNRAfPfaq~~ddk~~~~~~tLFk--l~HssN------FNT---------sVQaLmLlfQvs~~~~~ 530 (988)
T KOG2038|consen 468 ELNSRLLSALLTGVNRAFPFAQTADDKLEEQMKTLFK--LTHSSN------FNT---------SVQALMLLFQVSKKNDY 530 (988)
T ss_pred hhhHHHHHHHHhcccccCCcccCchHHHHHHhHHHHH--HHhhcc------cch---------hHHHHHHHHHHHHhhhh
Confidence 5688999999999999987 4689999999999 999999 997 99999999999999999
Q ss_pred CcchHHHHHHH-hhCcCcccchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCcc
Q 011123 236 EYPNFYEKLYA-LLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPS 314 (493)
Q Consensus 236 d~~rFY~~LY~-LLdp~l~~s~~ra~Fl~LL~~~Lks~~lp~~rVAAFiKRLlrlaL~~pp~~~~~iL~lI~nLLkrhP~ 314 (493)
.++|||++||+ ||||+++.++++++|++||+++|+.|. ++.||+||||||+|+|++++|+++|++|.++++|++..|.
T Consensus 531 vSDRyY~aLY~kLLdP~l~~sSKq~m~LnLlykslK~D~-ni~RV~AFvKRlLQVa~~q~P~~i~G~l~Llsel~Karp~ 609 (988)
T KOG2038|consen 531 VSDRYYRALYRKLLDPRLMNSSKQAMFLNLLYKSLKEDI-NIQRVRAFVKRLLQVAVQQQPPFICGILFLLSELLKARPT 609 (988)
T ss_pred hHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhcCCchhHhHHHHHHHHHHhcch
Confidence 99999999999 999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCC------C----------chhHHHHHH--h--------hh----h--------hcccCCCCCCCC
Q 011123 315 INCLLHREDGNETHND------D----------SKAEKEIVD--A--------AT----V--------ANISSIKPGIDH 356 (493)
Q Consensus 315 l~~Ll~~~~~~~~~~~------~----------~~~ege~~d--~--------~~----~--------~~~~~~~~~~d~ 356 (493)
++.|+.+.+..+.+.+ + .+.+|..++ + .. . .+. ..+...++
T Consensus 610 l~~lv~~~~~~D~e~dv~~~~e~DD~deek~vd~Dke~~~vdk~~~e~~~~e~ds~s~k~E~~~~~~~d~~-~~~~~~~~ 688 (988)
T KOG2038|consen 610 LRKLVVNSEDIDPEEDVVAQMENDDVDEEKKVDLDKEGKEVDKNGVEEEVEEEDSVSEKKEDLDKKKVDPI-GARGAKTP 688 (988)
T ss_pred HHHHhhCCcccChhhhhhhhhcccccchhhhccccccceeecccccccccccccccccchhhhhhhhcccc-ccccCCCC
Confidence 9999876554222110 0 011111110 0 00 0 011 12234579
Q ss_pred CCCCCCCCcCCCCCcchHHHHHHHhhccChHHHHHHHHhhhcccccccccccccCCCCCCcHHHHHHHHHhccCCCCCcc
Q 011123 357 FDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLA 436 (493)
Q Consensus 357 Ydp~~rDP~~~nA~~SsLWEL~~L~~HyHPsVa~~A~~l~~~~~i~~~~~~y~~~dfld~sy~~lld~e~~k~~k~~p~~ 436 (493)
|||.+|||.||||..||||||..|.+||||+|+.||+.+.+|..|+ |+++|+.|||+++||||++.|.+|++.-+
T Consensus 689 YD~r~R~P~f~nAd~tslWEl~~ls~HfHPSVa~~Akall~G~~i~-----y~g~~L~dfTL~~FLDrF~yRnPK~~t~~ 763 (988)
T KOG2038|consen 689 YDPRKRNPLFCNADHTSLWELLLLSKHFHPSVATFAKALLEGEEIQ-----YGGPPLNDFTLMAFLDRFAYRNPKQVTKA 763 (988)
T ss_pred CCcccCCccccCCccchHHHHHHHhhhcCchHHHHHHHHhcCceee-----cCCCchhHHHHHHHHHHHHhcCccccccc
Confidence 9999999999999999999999999999999999999999999985 99999999999999999999999988766
Q ss_pred c
Q 011123 437 F 437 (493)
Q Consensus 437 ~ 437 (493)
.
T Consensus 764 ~ 764 (988)
T KOG2038|consen 764 R 764 (988)
T ss_pred C
Confidence 4
No 3
>PF03914 CBF: CBF/Mak21 family; InterPro: IPR005612 This domain is present in the CAATT-binding protein which is essential for growth and necessary for 60S ribosomal subunit biogenesis. Other proteins containing this domain stimulate transcription from the HSP70 promoter.
Probab=100.00 E-value=3e-40 Score=307.50 Aligned_cols=162 Identities=41% Similarity=0.702 Sum_probs=143.3
Q ss_pred hHHHHHHHHHHHHHhcCCCcchHHHHHHHhh-CcCcccchhh-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhccCCh
Q 011123 218 VSVMALSSLFILMTQHGLEYPNFYEKLYALL-VPSIFMAKHR-AKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPP 295 (493)
Q Consensus 218 isllAL~~LF~Li~~~Nld~~rFY~~LY~LL-dp~l~~s~~r-a~Fl~LL~~~Lks~~lp~~rVAAFiKRLlrlaL~~pp 295 (493)
++|+||.+||+|++++|+|+++||++||++| +|..++++++ .+||++++++|+++++|..|||||||||+|+|+++||
T Consensus 1 ~~i~al~~l~~l~~~~n~d~~~FY~~LY~~L~~p~~~~~~~~~~~~l~lL~~~l~~~~~~~~rvaAFiKRLl~~sl~~~~ 80 (164)
T PF03914_consen 1 TCIQALFLLFQLLSGQNIDLDRFYRALYSLLLDPELFSSSDKSALLLNLLDKSLKSDHLPIQRVAAFIKRLLQLSLHLPP 80 (164)
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcchhhccccchHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCH
Confidence 5899999999999999999999999999966 9999998865 5599999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCccccccccccCCCCCCCCCchhHHHHHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcchHH
Q 011123 296 SGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLW 375 (493)
Q Consensus 296 ~~~~~iL~lI~nLLkrhP~l~~Ll~~~~~~~~~~~~~~~ege~~d~~~~~~~~~~~~~~d~Ydp~~rDP~~~nA~~SsLW 375 (493)
++++++|.+|++|+++||.|+.|+++++...+ .+.+++++ .....++|+|+++||++|||..|+||
T Consensus 81 ~~~~~~L~~i~~ll~~~p~l~~ll~~~~~~~~--~~~~~~~~------------~~~~~~~Y~p~~~dP~~~~a~~s~lW 146 (164)
T PF03914_consen 81 SFALAILALIRKLLKRHPNLKSLLDNEEKKAD--SGSEEEDE------------EDKSEDKYDPEKRDPEFSNALASSLW 146 (164)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHhcCCccccc--cchhhccc------------ccccccccCcCCCCHhHcCCchhHHH
Confidence 99999999999999999999999988765321 01111111 12356799999999999999999999
Q ss_pred HHHHHhhccChHHHHHHH
Q 011123 376 EIDTLRHHYCPPVSRFVL 393 (493)
Q Consensus 376 EL~~L~~HyHPsVa~~A~ 393 (493)
||.+|++||||+|+.+|+
T Consensus 147 EL~lL~~H~hP~V~~~A~ 164 (164)
T PF03914_consen 147 ELNLLRNHYHPSVRQFAR 164 (164)
T ss_pred HHHHHHHCCCcHHHHHhC
Confidence 999999999999999985
No 4
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.9e-30 Score=271.76 Aligned_cols=254 Identities=22% Similarity=0.205 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHHHhccCCCC-----hhhHHHHHHHhhhhhhccccChhhHhhHHHHhhhcCCchHHHHHHHHHHHHHhcC
Q 011123 160 KKMKSKFTKAWITFLRLPLP-----VDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHG 234 (493)
Q Consensus 160 ~~~k~~~~~awL~~L~~~lp-----~~l~k~vL~~L~k~i~phl~np~lL~DFltd~~d~gg~isllAL~~LF~Li~~~N 234 (493)
.+..+.+.++.|++++|+.| ...++.+..+|++ +.|-.+ |+| ++|||++++|..-+.-
T Consensus 362 ~eknS~~~savLtG~nRa~pfa~l~~~~~~~Hm~tlfk--ith~~~------fnt---------s~qalmli~q~~~~~~ 424 (821)
T COG5593 362 TEKNSFYGSAVLTGCNRAGPFALLFRNAVKSHMMTLFK--ITHEFL------FNT---------SEQALMLIDQEFYRFL 424 (821)
T ss_pred HhhhhHHHHHHHhcccccCchhhhhHHHHHHHHHHHHh--hhhhhh------hhH---------HHHHHHHHHHHHHHHh
Confidence 34567889999999999865 6788999999999 999988 886 9999999999999999
Q ss_pred CCcchHHHHHHH-hhCcCcccchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcc-CChhHHHHHHHHHHHHHHhC
Q 011123 235 LEYPNFYEKLYA-LLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSIL-VPPSGALVIMALIHNLLRRH 312 (493)
Q Consensus 235 ld~~rFY~~LY~-LLdp~l~~s~~ra~Fl~LL~~~Lks~~lp~~rVAAFiKRLlrlaL~-~pp~~~~~iL~lI~nLLkrh 312 (493)
++++|||+.||. |+||.+..+++++.+++|++.+|+-+. ++.||-||+||++|+|-+ +.+++..+....+.+|-+.-
T Consensus 425 l~SdryY~~lYesl~dprls~ssKqgiylnllykSL~vd~-nV~rv~af~kr~lQv~S~w~~~p~~tg~f~~l~ql~~a~ 503 (821)
T COG5593 425 LDSDRYYTPLYESLIDPRLSESSKQGIYLNLLYKSLRVDT-NVHRVDAFRKRALQVISGWMVLPFDTGDFMSLLQLEMAC 503 (821)
T ss_pred hccchhhhhHHHHHhhhhhhcccccchhHHHHHHHHHHhc-CchHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHh
Confidence 999999999999 999999999999999999999999998 889999999999999755 45667888888889999999
Q ss_pred ccccccccccCCCCCCCCCchhHHHHHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcchHHHHHHHhhccChHHHHHH
Q 011123 313 PSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFV 392 (493)
Q Consensus 313 P~l~~Ll~~~~~~~~~~~~~~~ege~~d~~~~~~~~~~~~~~d~Ydp~~rDP~~~nA~~SsLWEL~~L~~HyHPsVa~~A 392 (493)
|.++.|+.+.+-+ -+. +++.+++..| .......||..+|||.++||..||||||..+.+||||+|..+|
T Consensus 504 ~~lk~l~tn~~vd-~e~-e~d~~eeq~d---------kd~krkeydgrkrdpk~anae~s~lwei~~finhfhptv~~~a 572 (821)
T COG5593 504 GDLKNLLTNTPVD-YEY-ESDAEEEQGD---------KDIKRKEYDGRKRDPKFANAEKSSLWEINNFINHFHPTVKTYA 572 (821)
T ss_pred HHHHHHhcCCCcc-ccc-ccchhhhhcc---------cchhhhhccCcccCcccccccccchhhhhhhhhhcccHHHHHH
Confidence 9999999876542 111 1111111110 1122346999999999999999999999999999999999999
Q ss_pred HHhhhcccccccccccccCCCCCCcHHHHHHHHHhccCCCCCcccccCCCCcCCCC
Q 011123 393 LSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSD 448 (493)
Q Consensus 393 ~~l~~~~~i~~~~~~y~~~dfld~sy~~lld~e~~k~~k~~p~~~~~~~p~~lf~~ 448 (493)
+.+..|..+-. --++-=||+..|||+++.|.+|+...+--..|-+-||+.
T Consensus 573 ~a~v~ge~~i~------kp~l~l~tl~hfldrf~yr~~kqt~~arg~simqpl~~g 622 (821)
T COG5593 573 NAYVTGEEQIA------KPDLGLFTLSHFLDRFVYRSAKQTNTARGTSIMQPLFSG 622 (821)
T ss_pred HHhhhhhhhhc------CCCcchhhHHHHHHHHHhcCcccccccccchhhhhhhcc
Confidence 99999886422 123445899999999999999887666544343445543
No 5
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=99.82 E-value=3.2e-19 Score=185.36 Aligned_cols=205 Identities=20% Similarity=0.247 Sum_probs=173.4
Q ss_pred HHHHHHHHHhccCCCChhhHHHHHHHhhhhhhccccChhhHhhHHHHhhhc---------CC---chHHHHHHHHHHHHH
Q 011123 164 SKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDI---------GG---VVSVMALSSLFILMT 231 (493)
Q Consensus 164 ~~~~~awL~~L~~~lp~~l~k~vL~~L~k~i~phl~np~lL~DFltd~~d~---------gg---~isllAL~~LF~Li~ 231 (493)
+..+..||.+|+. --.+++..||+||.+ +.||.||++|+|||...|.. |. .-+++|+...|.|++
T Consensus 406 kiif~~Yf~vLk~-~~k~lig~vleGl~k--~~~~~n~eflGD~Levl~eL~~d~~~dk~ss~a~r~alLcI~tAF~i~S 482 (657)
T COG5117 406 KIIFRLYFMVLKG-DRKDLIGYVLEGLVK--YRKIINPEFLGDLLEVLYELLNDNPLDKISSDARRQALLCILTAFEIAS 482 (657)
T ss_pred HHHHHHHHHHHhc-chHHHHHHHHHHHHH--HHhhcCHHHHhHHHHHHHHHHcCCchhhhhHHHHHHHHHHhhHHHHHhh
Confidence 4556677777764 346799999999999 99999999999999998853 21 357888899998886
Q ss_pred h-----cCCCcchHHHHHHHhhCcCccc--------------------------chhhHHHHHHHHH-HhcCCCChHHHH
Q 011123 232 Q-----HGLEYPNFYEKLYALLVPSIFM--------------------------AKHRAKFFELLDS-CLRSPLLPAYLA 279 (493)
Q Consensus 232 ~-----~Nld~~rFY~~LY~LLdp~l~~--------------------------s~~ra~Fl~LL~~-~Lks~~lp~~rV 279 (493)
. .|+|.+.|-..||+++.|=-+. +....+++..++. |.++......|.
T Consensus 483 ~t~ygk~n~Dl~~fVd~lY~~v~p~~l~pD~dLn~k~~RL~DP~~~~~~~~VN~tt~~e~LlK~~~~~Ffksk~~~~~r~ 562 (657)
T COG5117 483 ATLYGKENYDLGGFVDLLYSMVHPMNLEPDADLNLKIKRLKDPDAPSKPFVVNATTDNEELLKIVRLLFFKSKQPVHRRH 562 (657)
T ss_pred hhhhhhccccHHHHHHHHHHHhCcccCCcchhhhhhhhhhcCCcccccCccccccccHHHHHHHHHHHheeccCchHHHH
Confidence 4 6999999999999976542111 1234567777755 678888788899
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCccccccccccCCCCCCCCCchhHHHHHHhhhhhcccCCCCCCCCCCC
Q 011123 280 AAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDD 359 (493)
Q Consensus 280 AAFiKRLlrlaL~~pp~~~~~iL~lI~nLLkrhP~l~~Ll~~~~~~~~~~~~~~~ege~~d~~~~~~~~~~~~~~d~Ydp 359 (493)
.+|-|||+-.|.+.|..+..++|.++..|+.|+|.|..+..++.+ .|.+.|+|
T Consensus 563 ~~f~krl~~c~s~~pe~~~~ail~~~~kl~~rys~~s~l~~sE~~---------------------------ig~g~~~~ 615 (657)
T COG5117 563 VIFKKRLLYCCSRSPEEFKGAILDISAKLDIRYSDCSNLKCSEFD---------------------------IGAGNVDS 615 (657)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhhhhhccCccCchhh---------------------------cCCccccc
Confidence 999999999999999999999999999999999999999988765 47799999
Q ss_pred CCCCCcCCCCCcchHHHHHHHhhccChHHHHHHHHhhhc
Q 011123 360 EESNPVKSNAMRSSLWEIDTLRHHYCPPVSRFVLSLEND 398 (493)
Q Consensus 360 ~~rDP~~~nA~~SsLWEL~~L~~HyHPsVa~~A~~l~~~ 398 (493)
...||..+|.....|||-.+|.+||+|.|.+-|+.++..
T Consensus 616 ~~~nP~~SN~~tA~l~e~fLlk~hy~P~Vsq~~k~L~~~ 654 (657)
T COG5117 616 IPSNPDLSNSSTAVLFEYFLLKQHYSPAVSQSAKELLKS 654 (657)
T ss_pred CCCCcccCCchhHHHHHHHHHHhhcCHHhHHHHHHHHhh
Confidence 999999999999999999999999999999999998763
No 6
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=5.4e-16 Score=167.19 Aligned_cols=213 Identities=18% Similarity=0.204 Sum_probs=166.9
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHhhhhhhccccChhhHhhHHHHhhhc------CCchHHHHHHHHHHHHHh----cC
Q 011123 165 KFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDI------GGVVSVMALSSLFILMTQ----HG 234 (493)
Q Consensus 165 ~~~~awL~~L~~~lp~~l~k~vL~~L~k~i~phl~np~lL~DFltd~~d~------gg~isllAL~~LF~Li~~----~N 234 (493)
..+..|+.+|+...-. ++..+|+||++ +.|++|++++.|++...-++ +...+++|++++|.|++. .|
T Consensus 460 iVFtiYFrILkn~~~t-ll~~vlEGlak--f~h~invef~~dll~vlk~ll~d~~~~~re~l~cvqtaf~IlS~qg~~ln 536 (704)
T KOG2153|consen 460 IVFTIYFRILKNDRYT-LLGAVLEGLAK--FAHLINVEFLGDLLKVLKELLEDIELSYREALLCVQTAFCILSGQGEKLN 536 (704)
T ss_pred HHHHHHHHHHhcchhh-HHHHHHhhHHH--HhhhccHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccceeec
Confidence 4455888889876555 99999999999 99999999999998754432 335789999999999975 58
Q ss_pred CCcchHHHHHHHhhCcCcccchh--hHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHh
Q 011123 235 LEYPNFYEKLYALLVPSIFMAKH--RAKFFELLDSCL-RSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRR 311 (493)
Q Consensus 235 ld~~rFY~~LY~LLdp~l~~s~~--ra~Fl~LL~~~L-ks~~lp~~rVAAFiKRLlrlaL~~pp~~~~~iL~lI~nLLkr 311 (493)
+|...||..||+++-|=-....+ -.+.+++++..+ ++.. |..+|.+|++||+..++|.-+...+ .+...+..
T Consensus 537 iD~~~fv~~lY~~l~~~~~~~~~~~~~~ilr~~d~~~~k~r~-~v~~~~~~~~~Ll~~~~h~~~~s~~----~s~~~~~~ 611 (704)
T KOG2153|consen 537 IDLGKFVDHLYKMLFPMNLGPDDDGFAIILRLLDPLLIKIRK-PVVNVITKMERLLKCSLHVFFNSKL----ISKYRDIE 611 (704)
T ss_pred cCHHHHHHHHHHHhcccccCCCcchHHHHHHHhhHhhhhhhh-hHHHHHHHHHHHHHHHHHHhhcccc----hHHHHHHH
Confidence 89999999999977663333222 357899999875 5565 8888999999999999998776555 55666677
Q ss_pred CccccccccccCCCCCCCCCchhHHHHHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcchHHHHHHHhhccChHHHHH
Q 011123 312 HPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEIDTLRHHYCPPVSRF 391 (493)
Q Consensus 312 hP~l~~Ll~~~~~~~~~~~~~~~ege~~d~~~~~~~~~~~~~~d~Ydp~~rDP~~~nA~~SsLWEL~~L~~HyHPsVa~~ 391 (493)
.+.|..|+.++ -|++|++....|||+.+++ |||.|+.+
T Consensus 612 fsk~~~~~~~~----------------------------------------~pe~~s~a~~al~e~~l~r--y~~~~~~~ 649 (704)
T KOG2153|consen 612 FSKRLNLLDSE----------------------------------------TPEYCSIASLALFEKLLLR--YHPISRLM 649 (704)
T ss_pred hhhhhhhhhcc----------------------------------------CccccccccHHHHHHHHHh--cchHHHHH
Confidence 77776666432 1999999999999999999 99999999
Q ss_pred HHHhhhcccccccccccccCCCCCCcHHHHHHHHHhcc
Q 011123 392 VLSLENDLTVRAKTTEINVKDFCSGSYATIFGEEIRRR 429 (493)
Q Consensus 392 A~~l~~~~~i~~~~~~y~~~dfld~sy~~lld~e~~k~ 429 (493)
|..+.-|.+.- +..-.--++...|.+.+|+..+-+.
T Consensus 650 a~~~~~G~~~~--~~~a~~p~~s~~sa~~L~~~~~~~~ 685 (704)
T KOG2153|consen 650 ASEIAIGVGAT--GEGALPPELSNLSAAELFEQDLLEM 685 (704)
T ss_pred HHHHhhcCCcc--CcCCCCccccCchHHHHhhhHHHHh
Confidence 99998888752 2222233456678899999987665
No 7
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=5.7e-05 Score=83.12 Aligned_cols=146 Identities=24% Similarity=0.312 Sum_probs=107.5
Q ss_pred HHHHHHHHhcCCC--cchHHHHHHHhhCcCcccch--------hhHHHHHHH-HHHhcCCCChHHHHHHHHHHHHHHhcc
Q 011123 224 SSLFILMTQHGLE--YPNFYEKLYALLVPSIFMAK--------HRAKFFELL-DSCLRSPLLPAYLAAAFVKKLSRLSIL 292 (493)
Q Consensus 224 ~~LF~Li~~~Nld--~~rFY~~LY~LLdp~l~~s~--------~ra~Fl~LL-~~~Lks~~lp~~rVAAFiKRLlrlaL~ 292 (493)
.++|-++-..|++ -+.||.- -+++||-+...+ .+-+++.+. ..+-.+..+..+|.-+|-||+.-++.+
T Consensus 544 ~~lY~~l~~~~~~~~~~~~~~i-lr~~d~~~~k~r~~v~~~~~~~~~Ll~~~~h~~~~s~~~s~~~~~~fsk~~~~~~~~ 622 (704)
T KOG2153|consen 544 DHLYKMLFPMNLGPDDDGFAII-LRLLDPLLIKIRKPVVNVITKMERLLKCSLHVFFNSKLISKYRDIEFSKRLNLLDSE 622 (704)
T ss_pred HHHHHHhcccccCCCcchHHHH-HHHhhHhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHhhhhhhhhhcc
Confidence 3455555544444 4455543 345565432211 222333332 234456778999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhCccccccccccCCCCCCCCCchhHHHHHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcc
Q 011123 293 VPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKAEKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRS 372 (493)
Q Consensus 293 ~pp~~~~~iL~lI~nLLkrhP~l~~Ll~~~~~~~~~~~~~~~ege~~d~~~~~~~~~~~~~~d~Ydp~~rDP~~~nA~~S 372 (493)
.|.....+.++|+-.+|-|++.+-.++..+.. .|.+.|.+...+|+.+|...+
T Consensus 623 ~pe~~s~a~~al~e~~l~ry~~~~~~~a~~~~---------------------------~G~~~~~~~a~~p~~s~~sa~ 675 (704)
T KOG2153|consen 623 TPEYCSIASLALFEKLLLRYHPISRLMASEIA---------------------------IGVGATGEGALPPELSNLSAA 675 (704)
T ss_pred CccccccccHHHHHHHHHhcchHHHHHHHHHh---------------------------hcCCccCcCCCCccccCchHH
Confidence 99989999999999999998877777665543 477899999999999999999
Q ss_pred hHHHHHHHhhccChHHHHHHHHhhh
Q 011123 373 SLWEIDTLRHHYCPPVSRFVLSLEN 397 (493)
Q Consensus 373 sLWEL~~L~~HyHPsVa~~A~~l~~ 397 (493)
.|||-.++..||+|+|..-++.+..
T Consensus 676 ~L~~~~~~~~~~~P~v~~~~kql~~ 700 (704)
T KOG2153|consen 676 ELFEQDLLEMHYNPTVPLSLKQLYK 700 (704)
T ss_pred HHhhhHHHHhccCCCCCchHHHHHH
Confidence 9999999999999999887776654
No 8
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.76 E-value=50 Score=38.54 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHhcCCC-cchHHHHHHH-hhCc-CcccchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhccCC
Q 011123 218 VSVMALSSLFILMTQHGLE-YPNFYEKLYA-LLVP-SIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVP 294 (493)
Q Consensus 218 isllAL~~LF~Li~~~Nld-~~rFY~~LY~-LLdp-~l~~s~~ra~Fl~LL~~~Lks~~lp~~rVAAFiKRLlrlaL~~p 294 (493)
+.=-||...+.|++.||++ --.|..+=.. --+. .--.-+||..+.+-+..|-. ..|. ..|.-|-=|+-.---..
T Consensus 333 vr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav--~Fp~-~aatvV~~ll~fisD~N 409 (948)
T KOG1058|consen 333 VRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAV--KFPE-VAATVVSLLLDFISDSN 409 (948)
T ss_pred HHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhh--cChH-HHHHHHHHHHHHhccCC
Confidence 4455677777777777653 2233332222 1111 11123455555555544421 1122 12333333333333356
Q ss_pred hhHHHHHHHHHHHHHHhCccccccc
Q 011123 295 PSGALVIMALIHNLLRRHPSINCLL 319 (493)
Q Consensus 295 p~~~~~iL~lI~nLLkrhP~l~~Ll 319 (493)
+..+..+|.||++.+.+.|+++..|
T Consensus 410 ~~aas~vl~FvrE~iek~p~Lr~~i 434 (948)
T KOG1058|consen 410 EAAASDVLMFVREAIEKFPNLRASI 434 (948)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHH
Confidence 7788899999999999999887654
No 9
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.76 E-value=5.8e+02 Score=29.33 Aligned_cols=150 Identities=16% Similarity=0.248 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhccCCCChhhH---HHHHHHhhhhhhccccCh--h-------hHhhHHHHhhh------cC-------
Q 011123 161 KMKSKFTKAWITFLRLPLPVDIY---KEVLVTLHRAVIPFLSNP--I-------MLCDFLTRSYD------IG------- 215 (493)
Q Consensus 161 ~~k~~~~~awL~~L~~~lp~~l~---k~vL~~L~k~i~phl~np--~-------lL~DFltd~~d------~g------- 215 (493)
-+.+.|.--|+..|....+-++. ...|+||+. .+.++ + .+.+||...-+ .+
T Consensus 181 ~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~----~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv 256 (675)
T KOG0212|consen 181 PMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFN----MLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLV 256 (675)
T ss_pred chHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHH----HhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhcc
Confidence 45778888999999987776554 578888876 33322 2 45567765322 11
Q ss_pred ----C---chHHHHHHHHHHHHHhcCCCcchHHHHHHHhhCcCc-----ccchhhHHHHH-HHHHHhcCCC-ChHHHHHH
Q 011123 216 ----G---VVSVMALSSLFILMTQHGLEYPNFYEKLYALLVPSI-----FMAKHRAKFFE-LLDSCLRSPL-LPAYLAAA 281 (493)
Q Consensus 216 ----g---~isllAL~~LF~Li~~~Nld~~rFY~~LY~LLdp~l-----~~s~~ra~Fl~-LL~~~Lks~~-lp~~rVAA 281 (493)
. -+..-||.-|+..+.-.+-+.-.|+.....-+-|-+ .+.+.-+...+ ++-.-.++.. ...--+.+
T Consensus 257 ~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ 336 (675)
T KOG0212|consen 257 PHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGS 336 (675)
T ss_pred ccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHH
Confidence 1 145568889999988888787788887766332322 22332333344 2222112111 01112235
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHHHhCcc
Q 011123 282 FVKKLSRLSILVPPSGALVIMALIHNLLRRHPS 314 (493)
Q Consensus 282 FiKRLlrlaL~~pp~~~~~iL~lI~nLLkrhP~ 314 (493)
.+-=|.+.-.+--...-+++|-||.-|..++|+
T Consensus 337 ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ 369 (675)
T KOG0212|consen 337 IIEVLTKYLSDDREETRIAVLNWIILLYHKAPG 369 (675)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc
Confidence 555555555555667778899999999999995
No 10
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=41.90 E-value=3.8e+02 Score=27.16 Aligned_cols=109 Identities=20% Similarity=0.249 Sum_probs=76.4
Q ss_pred hHhhHHHHhhhcCCchHHHHHHHHHHHHHhcCCCcc---hHHHHHHHhhCcCcccchhhHHHHHHHHHHhcCCCCh--HH
Q 011123 203 MLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYP---NFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLP--AY 277 (493)
Q Consensus 203 lL~DFltd~~d~gg~isllAL~~LF~Li~~~Nld~~---rFY~~LY~LLdp~l~~s~~ra~Fl~LL~~~Lks~~lp--~~ 277 (493)
.|.+|+.+.++-.. ....||.|+..|+...+.... ..-+.++.-.++.....+.|-..++++...+..-. . ..
T Consensus 42 ~L~~F~~~rl~D~~-~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~-~~l~~ 119 (262)
T PF14500_consen 42 VLLDFFCSRLDDHA-CVQPALKGLLALVKMKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR-EALQS 119 (262)
T ss_pred HHHHHHHHHhccHh-hHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH-HHHHh
Confidence 45568877664222 234458888888866666444 55566666667777778889999999998886521 1 12
Q ss_pred HHHHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhCc
Q 011123 278 LAAAFVKKLSRLSILV-PPSGALVIMALIHNLLRRHP 313 (493)
Q Consensus 278 rVAAFiKRLlrlaL~~-pp~~~~~iL~lI~nLLkrhP 313 (493)
.-..|++.+++++=.= -|-..+.+.-++..+++..+
T Consensus 120 ~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 120 MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 2458999999977553 57778888888888888888
No 11
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=35.20 E-value=1e+02 Score=28.81 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCccc
Q 011123 279 AAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSI 315 (493)
Q Consensus 279 VAAFiKRLlrlaL~~pp~~~~~iL~lI~nLLkrhP~l 315 (493)
+.+|+.=++++.-. +.....++..+..++++||+.
T Consensus 114 l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 114 LPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred HHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc
Confidence 44455544443331 466778899999999999965
No 12
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=26.47 E-value=1.3e+02 Score=22.36 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcc--CChhHHHHHHHHHHHHHHhCc
Q 011123 279 AAAFVKKLSRLSIL--VPPSGALVIMALIHNLLRRHP 313 (493)
Q Consensus 279 VAAFiKRLlrlaL~--~pp~~~~~iL~lI~nLLkrhP 313 (493)
+..=|++|+.++=. .+++-+-..+.-...|+.+|-
T Consensus 3 il~kI~kLLalA~~~~~~~~EA~~A~~kAq~Lm~ky~ 39 (43)
T PF10979_consen 3 ILEKIRKLLALAESTGSNEHEAEAALAKAQRLMAKYG 39 (43)
T ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 44558899999977 677788888999999999884
No 13
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=26.35 E-value=5.4e+02 Score=24.02 Aligned_cols=121 Identities=16% Similarity=0.136 Sum_probs=74.2
Q ss_pred HHHHhccCCCChhhHHHHHHHhhhhhhcccc--ChhhHhhHHHHhhhcCCchHHHHHHHHHHHHHh--cCCCcchHHHHH
Q 011123 169 AWITFLRLPLPVDIYKEVLVTLHRAVIPFLS--NPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQ--HGLEYPNFYEKL 244 (493)
Q Consensus 169 awL~~L~~~lp~~l~k~vL~~L~k~i~phl~--np~lL~DFltd~~d~gg~isllAL~~LF~Li~~--~Nld~~rFY~~L 244 (493)
.....|+. -.+.+.+..|..|.+-|.-.+. ++.++..|+.-.-|....++-.|...+.++..+ -|..+..|..-+
T Consensus 29 ~l~~~L~D-~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i 107 (178)
T PF12717_consen 29 NLYKCLRD-EDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELI 107 (178)
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 33444543 4567888888888876655554 455667888766677667888888888888877 344455555555
Q ss_pred HHhhCcCc------ccchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 011123 245 YALLVPSI------FMAKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLS 290 (493)
Q Consensus 245 Y~LLdp~l------~~s~~ra~Fl~LL~~~Lks~~lp~~rVAAFiKRLlrla 290 (493)
+.+-...- .+...+..+++.+..+++.+.-....+.-.+.|++...
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~~~~~~ 159 (178)
T PF12717_consen 108 SSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQRFLNAV 159 (178)
T ss_pred HHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHc
Confidence 55444321 23344556666666666644335555555555555544
No 14
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=24.74 E-value=69 Score=26.17 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=29.7
Q ss_pred chHHHHHHHhhccChHHHHHHHHhhhccccccccccccc
Q 011123 372 SSLWEIDTLRHHYCPPVSRFVLSLENDLTVRAKTTEINV 410 (493)
Q Consensus 372 SsLWEL~~L~~HyHPsVa~~A~~l~~~~~i~~~~~~y~~ 410 (493)
...||- +|++||+-.-...++.|..|..++ |...|.-
T Consensus 24 ~~yWe~-LLr~~ye~~q~e~~~~LGKGKR~R-KqV~y~~ 60 (66)
T PF06465_consen 24 PNYWEK-LLRHRYEQQQEEEEKALGKGKRSR-KQVNYAE 60 (66)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHhccccccc-ccccccc
Confidence 578995 679999999999999999998876 3445543
No 15
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=22.47 E-value=2.2e+02 Score=30.77 Aligned_cols=63 Identities=22% Similarity=0.432 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHhcCCCChH---HHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCccccccc
Q 011123 257 HRAKFFELLDSCLRSPLLPA---YLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLL 319 (493)
Q Consensus 257 ~ra~Fl~LL~~~Lks~~lp~---~rVAAFiKRLlrlaL~~pp~~~~~iL~lI~nLLkrhP~l~~Ll 319 (493)
|-.....++.+++.+..... +.-..|++||+.+--.--|.---.+..+++++..++++++..|
T Consensus 106 HL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~I 171 (409)
T PF01603_consen 106 HLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFI 171 (409)
T ss_dssp HHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred hHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 44556677777887755444 6777899999988777777767777778888888888777654
No 16
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=22.25 E-value=75 Score=26.02 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.0
Q ss_pred HHHHHhhccChHHHHHHHHhhhc
Q 011123 376 EIDTLRHHYCPPVSRFVLSLEND 398 (493)
Q Consensus 376 EL~~L~~HyHPsVa~~A~~l~~~ 398 (493)
-+..|++|..|.|+.+|+.+...
T Consensus 48 ~V~~Lrkh~~~~i~~~A~~Lv~~ 70 (76)
T cd00183 48 KVNSLRKHSNEKIRKLAKALIKS 70 (76)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHH
Confidence 37789999999999999998764
No 17
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=21.17 E-value=1.5e+02 Score=27.27 Aligned_cols=36 Identities=11% Similarity=0.358 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHH
Q 011123 274 LPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLR 310 (493)
Q Consensus 274 lp~~rVAAFiKRLlrlaL~~pp~~~~~iL~lI~nLLk 310 (493)
+|..-+..|++|+.+-+ ++++...+.+|..|..|.+
T Consensus 49 ~p~i~i~~fl~ri~~~~-~~s~~~~i~aliYl~Rl~~ 84 (149)
T PF08613_consen 49 VPSISIRDFLSRILKYT-QCSPECLILALIYLDRLRQ 84 (149)
T ss_dssp --SS-HHHHHHHHHHHT-T--HHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHH
Confidence 46666999999999877 4566677777888888888
No 18
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=21.07 E-value=1.7e+02 Score=26.54 Aligned_cols=65 Identities=20% Similarity=0.326 Sum_probs=36.1
Q ss_pred HHHHHHHHhc-cCCCChhhHHHHHHHhhhhh---hccccC---------hhhHhhHHHHhhhcC--CchHHHHHHHHHHH
Q 011123 165 KFTKAWITFL-RLPLPVDIYKEVLVTLHRAV---IPFLSN---------PIMLCDFLTRSYDIG--GVVSVMALSSLFIL 229 (493)
Q Consensus 165 ~~~~awL~~L-~~~lp~~l~k~vL~~L~k~i---~phl~n---------p~lL~DFltd~~d~g--g~isllAL~~LF~L 229 (493)
.|..-.+... -..++...+..+|..++..+ .|+..+ .+++..||...||.+ |.++++++...+.+
T Consensus 46 ~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 46 AFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 3444444444 22355556666666666211 466554 358888999999975 57888887666544
No 19
>PF01153 Glypican: Glypican; InterPro: IPR001863 Glypicans [, ] are a family of heparan sulphate proteoglycans which are anchored to cell membranes by a glycosylphosphatidylinositol (GPI) linkage. Six members (GPC1-6) are known in vertebrates []. Structurally, these proteins consist of three separate domains: A signal sequence; An extracellular domain of about 500 residues that contains 12 conserved cysteines probably involved in disulphide bonds and which also contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A C-terminal hydrophobic region which is post-translationally removed after formation of the GPI-anchor. ; GO: 0043395 heparan sulfate proteoglycan binding, 0005578 proteinaceous extracellular matrix, 0016020 membrane; PDB: 3ODN_A 4AD7_A 4ACR_C.
Probab=20.58 E-value=8.4e+02 Score=27.66 Aligned_cols=78 Identities=22% Similarity=0.348 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhhccc--cChhhHhhHHHHhh--hcCCchHHH-HHHHHHHHHHhcC
Q 011123 160 KKMKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFL--SNPIMLCDFLTRSY--DIGGVVSVM-ALSSLFILMTQHG 234 (493)
Q Consensus 160 ~~~k~~~~~awL~~L~~~lp~~l~k~vL~~L~k~i~phl--~np~lL~DFltd~~--d~gg~isll-AL~~LF~Li~~~N 234 (493)
...-++|++.+...|+. -+..|..|+..+...| .|-.++.||+++.- -.|+.+.|. +++-.|
T Consensus 93 ~~~~~~F~~~f~~ll~~------se~~~~~~F~~~Y~~ly~~~~~~~~~lf~~l~~y~~g~~~~l~~~l~~Ff------- 159 (557)
T PF01153_consen 93 STRARKFDEFFRELLRQ------SENSLHSMFSRTYGSLYPQNRPIFQDLFTDLRRYYLGSNVNLEEALNEFF------- 159 (557)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHTTHHHHCTHHHHHHHHHHHHHHHCCS-S-HHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHH-------
Confidence 34455777777777764 2345555555555544 47778888888754 356666553 222222
Q ss_pred CCcchHHHHHHHhhCcCcc
Q 011123 235 LEYPNFYEKLYALLVPSIF 253 (493)
Q Consensus 235 ld~~rFY~~LY~LLdp~l~ 253 (493)
++.|.++|.+++|..-
T Consensus 160 ---~~Lf~~~f~llnp~~~ 175 (557)
T PF01153_consen 160 ---DRLFPRVFRLLNPQYQ 175 (557)
T ss_dssp ---HHHHHHHHHHHTTTSB
T ss_pred ---HHHHHHHHHHhccCcC
Confidence 3445556667777653
Done!