Query 011123
Match_columns 493
No_of_seqs 253 out of 585
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 21:17:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011123.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011123hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3grl_A General vesicular trans 35.2 93 0.0032 34.3 8.4 138 166-313 61-244 (651)
2 1zoq_C CREB-binding protein, i 20.1 1.3E+02 0.0044 21.9 4.0 33 170-209 6-38 (47)
3 1w9c_A CRM1 protein, exportin 17.1 6.5E+02 0.022 25.1 10.0 55 217-271 182-249 (321)
4 3hts_B Heat shock transcriptio 16.4 1.6E+02 0.0054 24.7 4.5 46 236-286 11-70 (102)
5 2pmi_B PHO85 cyclin PHO80, ami 16.1 1.1E+02 0.0037 30.5 3.9 43 272-315 70-112 (293)
6 3dad_A FH1/FH2 domain-containi 14.8 3.4E+02 0.011 27.5 7.2 139 169-313 122-289 (339)
7 4gof_A Small glutamine-rich te 14.3 1.2E+02 0.0041 22.5 2.8 27 203-229 8-43 (52)
8 3si5_X Protein CASC5; BUBR1-bl 12.7 67 0.0023 20.1 0.8 8 280-287 14-21 (24)
9 2ldu_A Heat shock factor prote 12.3 3.4E+02 0.012 23.2 5.6 48 234-286 14-75 (125)
10 3zyq_A Hepatocyte growth facto 10.8 9.2E+02 0.032 22.2 12.3 139 255-455 23-162 (226)
No 1
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=35.25 E-value=93 Score=34.32 Aligned_cols=138 Identities=20% Similarity=0.159 Sum_probs=77.5
Q ss_pred HHHHHHHhccCC-CChhhHHHHHHHhhhhhhccccC----------hhhHhhHHHHhhhcCCchHHHHHHHHHHHHHhcC
Q 011123 166 FTKAWITFLRLP-LPVDIYKEVLVTLHRAVIPFLSN----------PIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHG 234 (493)
Q Consensus 166 ~~~awL~~L~~~-lp~~l~k~vL~~L~k~i~phl~n----------p~lL~DFltd~~d~gg~isllAL~~LF~Li~~~N 234 (493)
-...++..|++. -..++.+.+|++|.- ++.--.+ +.-++.+++|.+=.. --.+..|+.++
T Consensus 61 ~l~~li~~L~~d~~D~e~v~~~LetL~~-l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~----~~~i~~Ll~lL---- 131 (651)
T 3grl_A 61 AMEHLIHVLQTDRSDSEIIGYALDTLYN-IISNDEEEEVEENSTRQSEDLGSQFTEIFIKQ----QENVTLLLSLL---- 131 (651)
T ss_dssp THHHHHHHHHSCTTCHHHHHHHHHHHHH-HHCCC--------------CHHHHHHHHHHHS----THHHHHHHHHT----
T ss_pred hHHHHHHHHhcccccHHHHHHHHHHHHH-HhCCCCcccccccccccchHHHHHHHHHHHcC----CccHHHHHHHh----
Confidence 345678888765 567999999999975 3322111 122344555444111 01233344443
Q ss_pred CCcchHHHHHHH--hhCc------C-----cccc------------hhhHHHHH---HHHHHhcCCCChHHHHHHH---H
Q 011123 235 LEYPNFYEKLYA--LLVP------S-----IFMA------------KHRAKFFE---LLDSCLRSPLLPAYLAAAF---V 283 (493)
Q Consensus 235 ld~~rFY~~LY~--LLdp------~-----l~~s------------~~ra~Fl~---LL~~~Lks~~lp~~rVAAF---i 283 (493)
+.++||.++|+ +|.- . ++.+ ..|..+-+ ++-..|..++-..+-+.|| +
T Consensus 132 -~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaF 210 (651)
T 3grl_A 132 -EEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAF 210 (651)
T ss_dssp -TCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred -cCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccH
Confidence 56899999998 4431 1 1101 01111111 2233455566578889999 8
Q ss_pred HHHHHHhccCCh--hH--HHHHHHHHHHHHHhCc
Q 011123 284 KKLSRLSILVPP--SG--ALVIMALIHNLLRRHP 313 (493)
Q Consensus 284 KRLlrlaL~~pp--~~--~~~iL~lI~nLLkrhP 313 (493)
-||..+--.-.. ++ +--||.++.||++-+|
T Consensus 211 e~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~ 244 (651)
T 3grl_A 211 ERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN 244 (651)
T ss_dssp HHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH
Confidence 999988644332 22 2368999999998875
No 2
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=20.09 E-value=1.3e+02 Score=21.85 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=28.1
Q ss_pred HHHhccCCCChhhHHHHHHHhhhhhhccccChhhHhhHHH
Q 011123 170 WITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLT 209 (493)
Q Consensus 170 wL~~L~~~lp~~l~k~vL~~L~k~i~phl~np~lL~DFlt 209 (493)
.+.-||.+-++..-..||.+|.. ||.+++-|+.
T Consensus 6 Ll~tlksp~sp~qqqqvl~ILks-------nPqLMAAfIk 38 (47)
T 1zoq_C 6 LLRTLKSPSSPQQQQQVLNILKS-------NPQLMAAFIK 38 (47)
T ss_dssp HHHTCCSCCCHHHHHHHHHHHHT-------CHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHc-------CHHHHHHHHH
Confidence 56778888888888999999986 9999999975
No 3
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=17.12 E-value=6.5e+02 Score=25.05 Aligned_cols=55 Identities=16% Similarity=0.251 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHHHHhcCC---CcchHHHHHHHhhCcCc-------cc---chhhHHHHHHHHHHhcC
Q 011123 217 VVSVMALSSLFILMTQHGL---EYPNFYEKLYALLVPSI-------FM---AKHRAKFFELLDSCLRS 271 (493)
Q Consensus 217 ~isllAL~~LF~Li~~~Nl---d~~rFY~~LY~LLdp~l-------~~---s~~ra~Fl~LL~~~Lks 271 (493)
.++-.+|+.+.+++....- ....||++-|--+-.++ .| =+.++++|+-+.....+
T Consensus 182 ~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~~ve~ 249 (321)
T 1w9c_A 182 NVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEE 249 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHHHHHc
Confidence 4788889999888866431 23467777666221111 12 14556666666655544
No 4
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=16.37 E-value=1.6e+02 Score=24.66 Aligned_cols=46 Identities=26% Similarity=0.516 Sum_probs=27.0
Q ss_pred CcchHHHHHHHhh-CcCc---c---------cchhhHHHHH-HHHHHhcCCCChHHHHHHHHHHH
Q 011123 236 EYPNFYEKLYALL-VPSI---F---------MAKHRAKFFE-LLDSCLRSPLLPAYLAAAFVKKL 286 (493)
Q Consensus 236 d~~rFY~~LY~LL-dp~l---~---------~s~~ra~Fl~-LL~~~Lks~~lp~~rVAAFiKRL 286 (493)
..|.|..+||.|| ||.. . .......|-+ +|-++.+... .++|+..|
T Consensus 11 ~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~n-----fsSFvRQL 70 (102)
T 3hts_B 11 ARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSN-----FASFVRQL 70 (102)
T ss_dssp CSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCC-----HHHHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCc-----HHHHHHHh
Confidence 4678999999988 5532 1 1123455553 4555555443 66777655
No 5
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=16.10 E-value=1.1e+02 Score=30.52 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=32.7
Q ss_pred CCChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCccc
Q 011123 272 PLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSI 315 (493)
Q Consensus 272 ~~lp~~rVAAFiKRLlrlaL~~pp~~~~~iL~lI~nLLkrhP~l 315 (493)
...|.--+..|++||.+-|- +++...+++|..|..|..++|..
T Consensus 70 ~~~P~ISI~~Yl~RI~k~t~-ls~~~ll~ALvYLdRL~~~~p~~ 112 (293)
T 2pmi_B 70 KIPPNISIFNYFIRLTKFSS-LEHCVLMTSLYYIDLLQTVYPDF 112 (293)
T ss_dssp SSCCSSCHHHHHHHHHHTTT-CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhhCCCC
Confidence 33466678999999999775 45666777778888998888854
No 6
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=14.79 E-value=3.4e+02 Score=27.48 Aligned_cols=139 Identities=17% Similarity=0.119 Sum_probs=74.2
Q ss_pred HHHHhccCCCChhhHHHHHHHhhhhhhccccChhhHhhHHHH-----hhhc----CCchHHHHHHHHHHHHHh---c-CC
Q 011123 169 AWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTR-----SYDI----GGVVSVMALSSLFILMTQ---H-GL 235 (493)
Q Consensus 169 awL~~L~~~lp~~l~k~vL~~L~k~i~phl~np~lL~DFltd-----~~d~----gg~isllAL~~LF~Li~~---~-Nl 235 (493)
.|+..|.. -..+-.+..|-.|.+ +|- .++.+.-.|+.. ..++ .|.+--.+|..+-+||.. . ++
T Consensus 122 ~iiekL~~-~~~~~lr~aLfsLk~-~~q--~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 122 AILEKLYS-SSGPELRRSLFSLKQ-IFQ--EDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHHHH-CCHHHHHHHHHHHHH-HHH--TCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHhc-CCcHHHHHHHHHHHH-Hhh--cchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccch
Confidence 34455542 345567777777775 111 465555555531 1121 133444567777777642 1 22
Q ss_pred -CcchHHHHHHHhhCcCcccchhhHHHHHHHHHHhcCCCChHHHHHHHHH------------HHHHHhc---cCChhHHH
Q 011123 236 -EYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVK------------KLSRLSI---LVPPSGAL 299 (493)
Q Consensus 236 -d~~rFY~~LY~LLdp~l~~s~~ra~Fl~LL~~~Lks~~lp~~rVAAFiK------------RLlrlaL---~~pp~~~~ 299 (493)
..+.|-++||+++++..-..- ..=+.||..+...+.-....|..=|+ +|..+-- .+.+...+
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~--k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~ 275 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVV--KTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLV 275 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHH--HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHH
T ss_pred hCCHHHHHHHHHHHcCccHHHH--HHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHH
Confidence 278999999999984211111 22356666665443223334443333 3333322 34556667
Q ss_pred HHHHHHHHHHHhCc
Q 011123 300 VIMALIHNLLRRHP 313 (493)
Q Consensus 300 ~iL~lI~nLLkrhP 313 (493)
-++.+|..+|..-|
T Consensus 276 ~amtLIN~lL~~ap 289 (339)
T 3dad_A 276 YTVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhcCC
Confidence 77888888877654
No 7
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=14.35 E-value=1.2e+02 Score=22.53 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=20.4
Q ss_pred hHhhHHHHhhhcCC---------chHHHHHHHHHHH
Q 011123 203 MLCDFLTRSYDIGG---------VVSVMALSSLFIL 229 (493)
Q Consensus 203 lL~DFltd~~d~gg---------~isllAL~~LF~L 229 (493)
.+.|||.++.+.|. -++++||...|.+
T Consensus 8 sIi~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v 43 (52)
T 4gof_A 8 AIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGV 43 (52)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCC
Confidence 45789988887653 2788999888865
No 8
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=12.68 E-value=67 Score=20.13 Aligned_cols=8 Identities=38% Similarity=0.812 Sum_probs=5.3
Q ss_pred HHHHHHHH
Q 011123 280 AAFVKKLS 287 (493)
Q Consensus 280 AAFiKRLl 287 (493)
--|||||-
T Consensus 14 ndFIKRLK 21 (24)
T 3si5_X 14 NDFIKRLK 21 (26)
T ss_pred HHHHHHHh
Confidence 35888873
No 9
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=12.26 E-value=3.4e+02 Score=23.21 Aligned_cols=48 Identities=25% Similarity=0.418 Sum_probs=28.6
Q ss_pred CCCcchHHHHHHHhh-CcCcc------------cchhhHHHHH-HHHHHhcCCCChHHHHHHHHHHH
Q 011123 234 GLEYPNFYEKLYALL-VPSIF------------MAKHRAKFFE-LLDSCLRSPLLPAYLAAAFVKKL 286 (493)
Q Consensus 234 Nld~~rFY~~LY~LL-dp~l~------------~s~~ra~Fl~-LL~~~Lks~~lp~~rVAAFiKRL 286 (493)
....+.|..+||.+| ||+.. .......|-. +|-++.+... .++|+..|
T Consensus 14 ~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~n-----fsSFvRQL 75 (125)
T 2ldu_A 14 PSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNN-----MASFVRQL 75 (125)
T ss_dssp SCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCC-----HHHHHHHH
T ss_pred CCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCc-----HHHHHHHh
Confidence 346789999999977 55421 1123455544 4555555443 56676554
No 10
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=10.81 E-value=9.2e+02 Score=22.22 Aligned_cols=139 Identities=13% Similarity=0.155 Sum_probs=84.3
Q ss_pred chhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCccccccccccCCCCCCCCCchh
Q 011123 255 AKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHREDGNETHNDDSKA 334 (493)
Q Consensus 255 s~~ra~Fl~LL~~~Lks~~lp~~rVAAFiKRLlrlaL~~pp~~~~~iL~lI~nLLkrhP~l~~Ll~~~~~~~~~~~~~~~ 334 (493)
...-+..+.+.|..-+...-|..-+.|..|||- +-.|..++.+|.++-.+++. |..-+|.+-..
T Consensus 23 ~~dw~~ileicD~I~~~~~~~k~a~ral~krl~----~~n~~v~l~aL~LLe~~vkN---cG~~f~~eias--------- 86 (226)
T 3zyq_A 23 ETDWESILQICDLIRQGDTQAKYAVNSIKKKVN----DKNPHVALYALEVMESVVKN---CGQTVHDEVAN--------- 86 (226)
T ss_dssp SCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHT----CSSHHHHHHHHHHHHHHHHH---HCHHHHHHHSS---------
T ss_pred CcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHh---cchHHHHhhcc---------
Confidence 345567888888876555447788889999985 67788999999998888873 44444433220
Q ss_pred HHHHHHhhhhhcccCCCCCCCCCCCCCCCCcCCCCCcchHHHHH-HHhhccChHHHHHHHHhhhcccccccccccccCCC
Q 011123 335 EKEIVDAATVANISSIKPGIDHFDDEESNPVKSNAMRSSLWEID-TLRHHYCPPVSRFVLSLENDLTVRAKTTEINVKDF 413 (493)
Q Consensus 335 ege~~d~~~~~~~~~~~~~~d~Ydp~~rDP~~~nA~~SsLWEL~-~L~~HyHPsVa~~A~~l~~~~~i~~~~~~y~~~df 413 (493)
...+=||. ++....|+.|..-+..+.......++ .++
T Consensus 87 ------------------------------------~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~-----~~~- 124 (226)
T 3zyq_A 87 ------------------------------------KQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFR-----NEP- 124 (226)
T ss_dssp ------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT-----TCG-
T ss_pred ------------------------------------HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC-----CCc-
Confidence 01222332 44678899999888777766554332 111
Q ss_pred CCCcHHHHHHHHHhccCCCCCcccccCCCCcCCCCCCCCcce
Q 011123 414 CSGSYATIFGEEIRRRVKQVPLAFYKTTPTSLFSDSDFAGWT 455 (493)
Q Consensus 414 ld~sy~~lld~e~~k~~k~~p~~~~~~~p~~lf~~~d~~~~~ 455 (493)
++++..=+=++++++-=..|-.- ..+.+|+....+.|.
T Consensus 125 -~l~~i~~~Y~~Lk~~G~~FP~~~---~~damf~~~~~p~W~ 162 (226)
T 3zyq_A 125 -KYKVVQDTYQIMKVEGHVFPEFK---ESDAMFAAERAPDWV 162 (226)
T ss_dssp -GGHHHHHHHHHHHHHTCCCCCCC---GGGGCCCCCCCCCCC
T ss_pred -chHHHHHHHHHHHhcCCCcccch---hHHHhhhcccccccc
Confidence 12333333344555532333221 136788777778886
Done!