Query 011123
Match_columns 493
No_of_seqs 253 out of 585
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 21:17:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011123.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011123hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zoqc1 a.153.1.1 (C:2065-2111 33.9 24 0.0018 23.7 4.0 34 169-209 5-38 (47)
2 d1wiga1 g.39.1.3 (A:1-32) Acti 29.9 3.7 0.00027 25.8 -0.7 8 381-388 24-31 (32)
3 d1eg3a1 a.39.1.7 (A:85-209) Dy 15.7 83 0.006 25.4 4.7 36 195-230 81-122 (125)
4 d2jaka1 a.118.1.20 (A:30-372) 15.6 2.7E+02 0.02 25.6 9.3 65 257-321 104-173 (343)
5 d2gdwa1 a.28.1.2 (A:8-83) Pept 13.4 75 0.0054 22.7 3.5 28 210-238 30-57 (76)
6 d2htsa_ a.4.5.22 (A:) Heat-sho 9.3 1.7E+02 0.012 21.9 4.5 14 238-251 3-17 (92)
7 d1eo0a_ a.48.3.1 (A:) Transcri 9.2 56 0.0041 24.2 1.5 22 377-398 50-71 (77)
8 d1zeea1 a.266.1.2 (A:6-392) Hy 7.0 2.9E+02 0.021 26.0 5.8 64 233-299 201-271 (387)
9 d1dv5a_ a.28.1.3 (A:) apo-D-al 6.0 1E+02 0.0075 21.9 1.6 54 181-238 4-57 (80)
10 d1w53a_ a.186.1.2 (A:) Phospho 5.5 3.9E+02 0.028 19.7 4.8 72 162-235 7-82 (84)
No 1
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.88 E-value=24 Score=23.66 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=29.1
Q ss_pred HHHHhccCCCChhhHHHHHHHhhhhhhccccChhhHhhHHH
Q 011123 169 AWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLT 209 (493)
Q Consensus 169 awL~~L~~~lp~~l~k~vL~~L~k~i~phl~np~lL~DFlt 209 (493)
-.++.||.+-++.+-..||.+|.. ||.+++-|+.
T Consensus 5 ~Ll~tLrsP~sP~QQqQvL~ILks-------NP~lmaaFIk 38 (47)
T d1zoqc1 5 DLLRTLKSPSSPQQQQQVLNILKS-------NPQLMAAFIK 38 (47)
T ss_dssp HHHHTCCSCCCHHHHHHHHHHHHT-------CHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHc-------CHHHHHHHHH
Confidence 367888988888999999999886 9999999975
No 2
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.89 E-value=3.7 Score=25.80 Aligned_cols=8 Identities=38% Similarity=0.895 Sum_probs=5.8
Q ss_pred hhccChHH
Q 011123 381 RHHYCPPV 388 (493)
Q Consensus 381 ~~HyHPsV 388 (493)
-+||||+.
T Consensus 24 ~khYHP~C 31 (32)
T d1wiga1 24 EKHYHPSC 31 (32)
T ss_dssp SCCBCTTT
T ss_pred ccccCCCC
Confidence 37888864
No 3
>d1eg3a1 a.39.1.7 (A:85-209) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.66 E-value=83 Score=25.40 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=25.5
Q ss_pred hccccC----hhhHhhHHHHhhhcC--CchHHHHHHHHHHHH
Q 011123 195 IPFLSN----PIMLCDFLTRSYDIG--GVVSVMALSSLFILM 230 (493)
Q Consensus 195 ~phl~n----p~lL~DFltd~~d~g--g~isllAL~~LF~Li 230 (493)
-|+..| ..++..||...||.| |.++++++...+.++
T Consensus 81 ~~~~v~vp~~~dl~LN~LlnvYD~~rtG~i~vls~KvaL~~L 122 (125)
T d1eg3a1 81 HNNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKTGIISL 122 (125)
T ss_dssp STTTCCHHHHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHT
T ss_pred CcccCChHHHHHHHHHHHHHHhCCCCCCeeeehHHHHHHHHH
Confidence 455555 346666999999986 578888887666544
No 4
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.57 E-value=2.7e+02 Score=25.60 Aligned_cols=65 Identities=18% Similarity=0.310 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHhcCCCChH-----HHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCccccccccc
Q 011123 257 HRAKFFELLDSCLRSPLLPA-----YLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSINCLLHR 321 (493)
Q Consensus 257 ~ra~Fl~LL~~~Lks~~lp~-----~rVAAFiKRLlrlaL~~pp~~~~~iL~lI~nLLkrhP~l~~Ll~~ 321 (493)
|-.....++.+++.+..... +.-..|++||+.+--..-|.---.+..+++++..++++++..|-+
T Consensus 104 HL~lVY~ill~f~~s~~~~~~~~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~ 173 (343)
T d2jaka1 104 HLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK 173 (343)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred hHHHHHHHHHHHHhccccCchhHHhhCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 44556677778887754333 233589999999977777877777788889999999998877653
No 5
>d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]}
Probab=13.39 E-value=75 Score=22.67 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=20.2
Q ss_pred HhhhcCCchHHHHHHHHHHHHHhcCCCcc
Q 011123 210 RSYDIGGVVSVMALSSLFILMTQHGLEYP 238 (493)
Q Consensus 210 d~~d~gg~isllAL~~LF~Li~~~Nld~~ 238 (493)
+.++.|| .|++|+.++-.|-+.+++..+
T Consensus 30 ~f~~lG~-dSl~a~~l~~~i~~~~~~~l~ 57 (76)
T d2gdwa1 30 NFFQIGG-HSLKAMAVAAQVHREYQVELP 57 (76)
T ss_dssp TSSTTTC-TTHHHHHHHHHHHHTTSSCCT
T ss_pred CHHHcCC-ChHHHHHHHHHHHHHHCCCCC
Confidence 3445665 789999999888888776533
No 6
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=9.35 E-value=1.7e+02 Score=21.86 Aligned_cols=14 Identities=36% Similarity=0.709 Sum_probs=11.5
Q ss_pred chHHHHHHHhh-CcC
Q 011123 238 PNFYEKLYALL-VPS 251 (493)
Q Consensus 238 ~rFY~~LY~LL-dp~ 251 (493)
|.|-.+||.|| +|+
T Consensus 3 P~F~~kL~~~l~~~~ 17 (92)
T d2htsa_ 3 PAFVNKLWSMVNDKS 17 (92)
T ss_dssp CHHHHHHHHHHHCGG
T ss_pred CChHHHHHHHHcCcC
Confidence 67999999988 554
No 7
>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.22 E-value=56 Score=24.19 Aligned_cols=22 Identities=9% Similarity=0.265 Sum_probs=18.2
Q ss_pred HHHHhhccChHHHHHHHHhhhc
Q 011123 377 IDTLRHHYCPPVSRFVLSLEND 398 (493)
Q Consensus 377 L~~L~~HyHPsVa~~A~~l~~~ 398 (493)
+..|+.|-+|.|+.+|+.|..+
T Consensus 50 Vn~LRkh~~~~v~~lAk~Lv~~ 71 (77)
T d1eo0a_ 50 VNKFKKSTNVEISKLVKKMISS 71 (77)
T ss_dssp HHHCCSSSCTTHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHH
Confidence 5578899999999999988764
No 8
>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella oneidensis [TaxId: 70863]}
Probab=6.97 E-value=2.9e+02 Score=25.96 Aligned_cols=64 Identities=9% Similarity=0.052 Sum_probs=36.0
Q ss_pred cCCCcchHHHHHHHhhCc-Cccc------chhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhccCChhHHH
Q 011123 233 HGLEYPNFYEKLYALLVP-SIFM------AKHRAKFFELLDSCLRSPLLPAYLAAAFVKKLSRLSILVPPSGAL 299 (493)
Q Consensus 233 ~Nld~~rFY~~LY~LLdp-~l~~------s~~ra~Fl~LL~~~Lks~~lp~~rVAAFiKRLlrlaL~~pp~~~~ 299 (493)
..+|.++||..+=--+.| ++.. +.-+.-.++.+|.+|.-.|.+..--..|..+. -.++||.--.
T Consensus 201 ~~ld~~~Ff~~vRPyykP~rVG~q~YrG~sAgqsa~I~vlD~LLGvcha~dP~ysqfL~dm---r~YMPP~hra 271 (387)
T d1zeea1 201 NRLDTDRFFYCVRPYYKPYRVGSVVYRGANAGDFAGINVIDLTLGLCFANEASYSQMLVDK---FLYMMPEDQQ 271 (387)
T ss_dssp TTSCHHHHHHHTGGGGCCEEETTEEECCCCTTCSHHHHHHHHHTTSSCTTSHHHHHHHHTT---GGGSCHHHHH
T ss_pred HhcCHHHHHHHhhhhcchhhcCCeeeCCCChhhcccHHHHHHHHccccCCCccHHHHHHHH---HhhCCHHHHH
Confidence 467777887654333343 1111 12234568899999986654222235676554 3588886443
No 9
>d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]}
Probab=5.98 E-value=1e+02 Score=21.94 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=32.6
Q ss_pred hhHHHHHHHhhhhhhccccChhhHhhHHHHhhhcCCchHHHHHHHHHHHHHhcCCCcc
Q 011123 181 DIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQHGLEYP 238 (493)
Q Consensus 181 ~l~k~vL~~L~k~i~phl~np~lL~DFltd~~d~gg~isllAL~~LF~Li~~~Nld~~ 238 (493)
.+.+.++..+.+ ++. . ++.- .+--++.++.||.-|+.++.++..|-..+++.-|
T Consensus 4 ~I~~~v~~il~~-~l~-~-~~~~-i~~d~~l~e~gglDSl~~vel~~~ie~~fgi~i~ 57 (80)
T d1dv5a_ 4 AIKNGVLDILAD-LTG-S-DDVK-KNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAP 57 (80)
T ss_dssp HHHHHHHHHHHH-HHT-S-SSTT-TCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCCC
T ss_pred HHHHHHHHHHHH-Hhc-c-chhh-cCCCccccccCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 455666666665 221 1 1111 1111334577888899999999999888877543
No 10
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=5.52 E-value=3.9e+02 Score=19.73 Aligned_cols=72 Identities=11% Similarity=0.158 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhhccccChhhHhhHHHHhhhc---C-CchHHHHHHHHHHHHHhcCC
Q 011123 162 MKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDI---G-GVVSVMALSSLFILMTQHGL 235 (493)
Q Consensus 162 ~k~~~~~awL~~L~~~lp~~l~k~vL~~L~k~i~phl~np~lL~DFltd~~d~---g-g~isllAL~~LF~Li~~~Nl 235 (493)
++.++..+.-.+|...-...++ ....+.+.++-+=+.|+-+.+.-..+.+. + ..-...++..|.++|..+++
T Consensus 7 ~~~~Y~~iL~~Yl~~~~E~~Ly--~~~~fsre~iek~IsPEeIV~iHk~~l~el~~~~~e~v~~Sfd~LlEVm~gyG~ 82 (84)
T d1w53a_ 7 IEQRYHQLLSRYIAELTETSLY--QAQKFSRKTIEHQIPPEEIISIHRKVLKELYPSLPEDVFHSLDFLIEVMIGYGM 82 (84)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHcCc
Confidence 3444444444444432233444 67788888888888998888876665542 2 23457788999999887764
Done!